Query 043204
Match_columns 504
No_of_seqs 700 out of 1875
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 03:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5E-42 1.7E-46 335.7 34.8 472 7-502 83-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.3E-39 1.8E-43 314.2 34.9 457 20-502 65-544 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4E-29 1.4E-33 230.5 45.0 363 14-431 5-367 (388)
4 4g26_A Pentatricopeptide repea 100.0 3E-32 1E-36 254.5 23.7 203 281-485 10-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6E-28 2.1E-32 222.6 44.6 378 51-483 5-383 (388)
6 4g26_A Pentatricopeptide repea 100.0 7E-31 2.4E-35 245.3 24.4 187 152-379 27-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 4.5E-25 1.5E-29 211.6 40.9 450 10-476 8-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-24 6.5E-29 207.2 35.7 441 44-502 5-477 (514)
9 3fp2_A TPR repeat-containing p 99.9 8.4E-24 2.9E-28 203.9 39.5 432 10-468 27-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 3.5E-23 1.2E-27 194.8 38.9 341 26-410 10-370 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.8E-23 6.3E-28 196.8 36.3 318 8-374 26-370 (450)
12 3fp2_A TPR repeat-containing p 99.9 9E-23 3.1E-27 196.7 34.0 433 45-502 25-490 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 9.7E-20 3.3E-24 165.8 36.0 341 9-414 4-351 (359)
14 2ooe_A Cleavage stimulation fa 99.9 8E-19 2.7E-23 168.2 42.0 421 10-466 15-491 (530)
15 3ieg_A DNAJ homolog subfamily 99.9 5.9E-19 2E-23 160.6 38.6 347 44-450 2-352 (359)
16 2xm6_A Protein corresponding t 99.9 6.3E-18 2.1E-22 160.3 46.7 366 25-468 24-433 (490)
17 3hym_B Cell division cycle pro 99.9 5.1E-19 1.7E-23 159.0 33.4 195 10-212 24-219 (330)
18 2xm6_A Protein corresponding t 99.9 1.8E-17 6E-22 157.2 44.3 350 9-433 40-433 (490)
19 2ooe_A Cleavage stimulation fa 99.9 7.7E-18 2.6E-22 161.4 41.2 387 9-432 47-492 (530)
20 3hym_B Cell division cycle pro 99.9 4.7E-18 1.6E-22 152.7 33.1 292 150-490 21-321 (330)
21 1fch_A Peroxisomal targeting s 99.8 1.1E-18 3.7E-23 159.5 25.4 316 20-394 13-357 (368)
22 1fch_A Peroxisomal targeting s 99.8 1.9E-18 6.5E-23 157.8 26.9 295 18-321 35-355 (368)
23 4eqf_A PEX5-related protein; a 99.8 1.1E-18 3.7E-23 159.2 24.5 280 7-321 64-352 (365)
24 1xi4_A Clathrin heavy chain; a 99.8 3.1E-16 1.1E-20 156.0 40.9 379 12-458 989-1375(1630)
25 1b89_A Protein (clathrin heavy 99.8 2.5E-18 8.7E-23 153.1 22.6 188 18-248 13-200 (449)
26 4eqf_A PEX5-related protein; a 99.8 7.3E-18 2.5E-22 153.7 23.9 277 150-463 64-352 (365)
27 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.9E-22 147.7 23.5 268 5-353 29-304 (449)
28 3cv0_A Peroxisome targeting si 99.8 3.1E-17 1.1E-21 147.1 25.7 278 7-322 20-312 (327)
29 3cv0_A Peroxisome targeting si 99.8 1.1E-16 3.8E-21 143.4 28.1 281 150-465 20-313 (327)
30 4g1t_A Interferon-induced prot 99.8 1E-15 3.5E-20 144.8 34.4 393 43-476 49-469 (472)
31 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4E-21 139.7 25.0 131 295-431 129-263 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 8.9E-16 3E-20 134.1 29.8 256 88-396 7-264 (291)
33 1xi4_A Clathrin heavy chain; a 99.8 4.5E-14 1.5E-18 140.9 44.3 383 44-495 984-1376(1630)
34 3spa_A Mtrpol, DNA-directed RN 99.8 5.7E-19 2E-23 169.9 8.4 155 112-275 124-286 (1134)
35 4g1t_A Interferon-induced prot 99.8 4.6E-15 1.6E-19 140.3 34.1 367 112-503 48-459 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.8 8.4E-19 2.9E-23 168.8 7.4 157 9-165 128-286 (1134)
37 2pl2_A Hypothetical conserved 99.7 6.7E-16 2.3E-20 128.9 17.8 208 7-251 4-211 (217)
38 4e6h_A MRNA 3'-END-processing 99.7 4.5E-13 1.5E-17 129.0 38.4 445 23-482 47-583 (679)
39 3e4b_A ALGK; tetratricopeptide 99.7 9.3E-15 3.2E-19 136.3 25.7 380 12-466 7-420 (452)
40 3u4t_A TPR repeat-containing p 99.7 1.9E-14 6.5E-19 125.2 25.8 247 8-264 3-258 (272)
41 2pl2_A Hypothetical conserved 99.7 7.3E-15 2.5E-19 122.6 21.2 209 44-288 4-212 (217)
42 3uq3_A Heat shock protein STI1 99.7 2E-14 6.8E-19 123.9 24.3 224 10-254 7-236 (258)
43 3e4b_A ALGK; tetratricopeptide 99.7 2.3E-14 7.9E-19 133.6 24.9 378 50-501 8-419 (452)
44 3uq3_A Heat shock protein STI1 99.7 2.8E-14 9.7E-19 122.9 22.5 228 151-432 5-236 (258)
45 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-13 4E-18 118.6 25.1 203 45-255 37-239 (252)
46 2q7f_A YRRB protein; TPR, prot 99.6 8.8E-15 3E-19 124.9 17.9 198 47-254 25-222 (243)
47 1ouv_A Conserved hypothetical 99.6 3E-13 1E-17 117.6 27.5 222 9-255 7-252 (273)
48 2vq2_A PILW, putative fimbrial 99.6 1.3E-13 4.3E-18 116.1 24.1 204 44-254 7-211 (225)
49 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7.1E-18 118.5 26.1 95 155-254 7-103 (272)
50 2ho1_A Type 4 fimbrial biogene 99.6 2.2E-13 7.5E-18 116.9 25.4 195 11-212 40-235 (252)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.7E-15 2.3E-19 128.3 16.0 227 17-254 14-244 (275)
52 2vq2_A PILW, putative fimbrial 99.6 2.5E-13 8.7E-18 114.2 24.6 199 8-212 8-208 (225)
53 2h6f_A Protein farnesyltransfe 99.6 1.5E-13 5E-18 124.1 24.0 231 10-254 99-348 (382)
54 4a1s_A PINS, partner of inscut 99.6 5.7E-14 2E-18 130.2 21.4 279 13-325 53-372 (411)
55 1ouv_A Conserved hypothetical 99.6 1.8E-12 6.3E-17 112.5 29.6 191 44-254 5-215 (273)
56 4e6h_A MRNA 3'-END-processing 99.6 1.9E-11 6.5E-16 117.8 38.9 426 7-448 65-584 (679)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.8E-13 6E-18 119.2 22.9 245 128-426 18-269 (275)
58 2h6f_A Protein farnesyltransfe 99.6 6E-13 2.1E-17 120.1 26.8 233 151-432 97-348 (382)
59 3sf4_A G-protein-signaling mod 99.6 5.5E-14 1.9E-18 130.0 20.4 282 13-356 14-332 (406)
60 3sf4_A G-protein-signaling mod 99.6 1.2E-13 4E-18 127.8 22.5 214 151-395 87-335 (406)
61 2q7f_A YRRB protein; TPR, prot 99.6 9.3E-14 3.2E-18 118.5 20.0 200 5-212 20-219 (243)
62 4a1s_A PINS, partner of inscut 99.6 1.4E-13 4.9E-18 127.4 22.5 285 151-467 48-372 (411)
63 3ro2_A PINS homolog, G-protein 99.6 2E-13 6.9E-18 122.6 22.3 284 11-325 8-332 (338)
64 3ro2_A PINS homolog, G-protein 99.6 1.6E-13 5.6E-18 123.2 21.1 283 153-467 7-332 (338)
65 3ulq_A Response regulator aspa 99.6 6.4E-13 2.2E-17 121.7 24.4 235 18-254 22-293 (383)
66 2ond_A Cleavage stimulation fa 99.6 4.3E-12 1.5E-16 112.2 27.9 219 25-255 33-271 (308)
67 3ulq_A Response regulator aspa 99.5 2.4E-12 8.2E-17 117.9 23.4 241 157-431 109-367 (383)
68 3vtx_A MAMA; tetratricopeptide 99.5 7E-13 2.4E-17 107.6 17.3 166 8-180 5-170 (184)
69 3q15_A PSP28, response regulat 99.5 2.8E-12 9.6E-17 117.1 22.4 320 4-358 6-363 (378)
70 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4.2E-17 122.8 20.2 214 24-250 84-317 (474)
71 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-12 5.5E-17 115.3 18.7 174 81-254 28-224 (311)
72 3vtx_A MAMA; tetratricopeptide 99.5 7.1E-12 2.4E-16 101.6 20.6 173 295-475 4-176 (184)
73 3q15_A PSP28, response regulat 99.5 3.9E-11 1.3E-15 109.5 27.3 239 157-431 107-364 (378)
74 2ond_A Cleavage stimulation fa 99.5 1.2E-10 4.2E-15 102.8 28.6 220 168-432 33-270 (308)
75 3nf1_A KLC 1, kinesin light ch 99.5 4.1E-12 1.4E-16 112.7 19.0 240 10-254 29-307 (311)
76 1hz4_A MALT regulatory protein 99.4 1.8E-10 6.2E-15 105.0 27.8 278 88-395 22-321 (373)
77 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5E-16 115.5 19.6 213 61-320 84-316 (474)
78 1hz4_A MALT regulatory protein 99.4 5E-10 1.7E-14 102.1 28.8 281 155-466 18-321 (373)
79 3as5_A MAMA; tetratricopeptide 99.4 6.6E-12 2.3E-16 101.9 14.7 162 47-213 10-171 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.4 1.8E-11 6.3E-16 119.4 17.9 165 8-179 9-173 (723)
81 3edt_B KLC 2, kinesin light ch 99.4 1.3E-11 4.6E-16 107.6 15.4 236 18-254 11-281 (283)
82 3as5_A MAMA; tetratricopeptide 99.3 1.7E-10 5.8E-15 93.4 18.6 165 81-254 9-173 (186)
83 4i17_A Hypothetical protein; T 99.3 3.2E-10 1.1E-14 95.3 19.5 201 267-481 13-221 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.3 8.4E-11 2.9E-15 114.8 17.3 171 39-214 2-173 (723)
85 4i17_A Hypothetical protein; T 99.3 2.8E-10 9.5E-15 95.7 18.4 208 7-233 6-222 (228)
86 3edt_B KLC 2, kinesin light ch 99.3 5.3E-11 1.8E-15 103.8 14.3 206 295-503 42-281 (283)
87 2uy1_A Cleavage stimulation fa 99.2 2.7E-08 9.1E-13 93.2 30.1 379 20-466 6-412 (493)
88 2r5s_A Uncharacterized protein 99.2 2.8E-10 9.7E-15 91.2 14.2 162 10-177 8-170 (176)
89 2pzi_A Probable serine/threoni 99.2 2.3E-10 8E-15 112.3 16.4 173 19-201 402-583 (681)
90 3urz_A Uncharacterized protein 99.2 4.9E-10 1.7E-14 92.5 15.7 170 13-192 9-196 (208)
91 1qqe_A Vesicular transport pro 99.2 8.2E-10 2.8E-14 96.6 17.3 158 55-212 47-225 (292)
92 3qky_A Outer membrane assembly 99.2 6.4E-10 2.2E-14 95.7 15.4 210 12-245 19-252 (261)
93 3mv2_B Coatomer subunit epsilo 99.2 6.3E-08 2.2E-12 82.8 26.7 180 170-396 85-282 (310)
94 1qqe_A Vesicular transport pro 99.1 4.1E-09 1.4E-13 92.1 19.6 238 242-502 2-268 (292)
95 3qky_A Outer membrane assembly 99.1 4.8E-09 1.6E-13 90.1 19.7 189 44-255 14-225 (261)
96 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.8E-14 94.7 16.4 166 44-213 116-282 (287)
97 2fo7_A Synthetic consensus TPR 99.1 1.4E-09 4.9E-14 82.6 14.3 126 11-141 4-129 (136)
98 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.8E-09 9.5E-14 89.2 16.6 179 11-212 7-210 (225)
99 3mv2_B Coatomer subunit epsilo 99.1 2.4E-08 8.2E-13 85.4 21.4 146 99-253 85-239 (310)
100 4ga2_A E3 SUMO-protein ligase 99.1 4.1E-10 1.4E-14 87.4 8.3 145 14-165 3-148 (150)
101 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4.3E-13 77.3 16.5 128 334-466 4-131 (136)
102 3rjv_A Putative SEL1 repeat pr 99.1 1.8E-08 6.1E-13 83.3 18.4 174 25-212 3-194 (212)
103 2r5s_A Uncharacterized protein 99.1 4.9E-09 1.7E-13 83.9 14.4 163 45-212 6-170 (176)
104 3urz_A Uncharacterized protein 99.0 1.7E-08 5.9E-13 83.1 17.2 171 302-481 10-198 (208)
105 3dra_A Protein farnesyltransfe 99.0 1.2E-07 4E-12 82.1 22.8 226 16-253 40-286 (306)
106 3qou_A Protein YBBN; thioredox 99.0 1.6E-08 5.4E-13 88.0 17.6 180 61-253 102-283 (287)
107 3rjv_A Putative SEL1 repeat pr 99.0 3.9E-08 1.3E-12 81.2 19.0 176 279-468 4-198 (212)
108 2pzi_A Probable serine/threoni 99.0 6.1E-09 2.1E-13 102.3 16.1 173 56-240 402-583 (681)
109 2vsy_A XCC0866; transferase, g 99.0 6.1E-09 2.1E-13 100.5 15.8 154 21-181 2-158 (568)
110 2uy1_A Cleavage stimulation fa 99.0 9.8E-07 3.4E-11 82.7 30.0 366 13-431 20-412 (493)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 8.2E-09 2.8E-13 90.9 14.9 205 20-252 3-222 (307)
112 2yhc_A BAMD, UPF0169 lipoprote 99.0 9.9E-08 3.4E-12 79.7 20.0 189 44-256 3-215 (225)
113 4f3v_A ESX-1 secretion system 99.0 5E-08 1.7E-12 82.3 17.7 186 20-212 18-234 (282)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 4.9E-08 1.7E-12 86.0 18.6 209 128-394 4-222 (307)
115 4ga2_A E3 SUMO-protein ligase 98.9 6.7E-09 2.3E-13 80.4 10.5 145 51-200 3-148 (150)
116 3u3w_A Transcriptional activat 98.9 6.6E-07 2.3E-11 78.1 23.2 171 83-253 78-265 (293)
117 2qfc_A PLCR protein; TPR, HTH, 98.9 4.8E-07 1.6E-11 79.0 21.7 170 82-251 77-263 (293)
118 3dra_A Protein farnesyltransfe 98.9 4.6E-06 1.6E-10 72.1 27.0 220 165-431 47-286 (306)
119 4gco_A Protein STI-1; structur 98.9 3.8E-08 1.3E-12 73.4 12.1 95 12-110 17-111 (126)
120 3u3w_A Transcriptional activat 98.9 1.4E-06 4.8E-11 76.0 23.7 176 117-324 77-265 (293)
121 3gw4_A Uncharacterized protein 98.8 7.3E-08 2.5E-12 79.1 14.1 120 19-141 3-133 (203)
122 1a17_A Serine/threonine protei 98.8 1.1E-07 3.8E-12 75.0 14.6 126 11-141 16-143 (166)
123 3q7a_A Farnesyltransferase alp 98.8 1.8E-06 6.2E-11 75.5 23.1 228 15-254 61-331 (349)
124 2vsy_A XCC0866; transferase, g 98.8 1.6E-07 5.5E-12 90.6 18.5 153 275-433 3-158 (568)
125 2lni_A Stress-induced-phosphop 98.8 5E-08 1.7E-12 73.7 11.6 97 10-110 18-114 (133)
126 2vgx_A Chaperone SYCD; alterna 98.8 2.3E-08 7.8E-13 77.1 9.4 110 30-144 9-118 (148)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5E-07 1.7E-11 74.7 17.8 129 48-181 9-151 (213)
128 2e2e_A Formate-dependent nitri 98.8 4E-08 1.4E-12 78.6 10.5 122 18-144 20-144 (177)
129 1na0_A Designed protein CTPR3; 98.8 1.8E-07 6E-12 69.6 13.2 97 10-110 11-107 (125)
130 3gyz_A Chaperone protein IPGC; 98.8 5.2E-08 1.8E-12 75.0 10.2 99 44-144 35-133 (151)
131 3gw4_A Uncharacterized protein 98.8 2.8E-07 9.7E-12 75.5 15.5 102 152-253 67-175 (203)
132 3gyz_A Chaperone protein IPGC; 98.8 1.6E-08 5.4E-13 77.9 7.2 123 47-180 11-133 (151)
133 2qfc_A PLCR protein; TPR, HTH, 98.8 1.8E-06 6E-11 75.4 21.2 174 116-289 76-265 (293)
134 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8E-07 2.7E-11 73.4 17.9 129 298-432 8-150 (213)
135 1a17_A Serine/threonine protei 98.7 2E-07 7E-12 73.5 13.7 94 47-142 15-108 (166)
136 2c2l_A CHIP, carboxy terminus 98.7 3.3E-08 1.1E-12 85.6 9.6 97 9-109 5-101 (281)
137 2vyi_A SGTA protein; chaperone 98.7 2.3E-07 7.9E-12 69.7 12.3 95 11-109 15-109 (131)
138 4gco_A Protein STI-1; structur 98.7 2E-07 6.8E-12 69.5 10.7 97 45-143 13-109 (126)
139 2kck_A TPR repeat; tetratricop 98.7 3.9E-07 1.3E-11 66.2 11.8 101 7-111 5-108 (112)
140 1hxi_A PEX5, peroxisome target 98.6 1.9E-07 6.5E-12 69.0 9.8 97 10-110 19-115 (121)
141 1p5q_A FKBP52, FK506-binding p 98.6 5.4E-07 1.8E-11 80.2 14.5 130 10-141 149-291 (336)
142 2xcb_A PCRH, regulatory protei 98.6 1.7E-07 5.8E-12 71.8 9.5 96 45-142 18-113 (142)
143 2vgx_A Chaperone SYCD; alterna 98.6 5.6E-07 1.9E-11 69.3 12.3 97 10-110 23-119 (148)
144 3upv_A Heat shock protein STI1 98.6 5.4E-07 1.8E-11 67.2 11.9 97 10-110 6-102 (126)
145 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-07 4.1E-12 84.5 9.4 150 59-212 127-291 (336)
146 4f3v_A ESX-1 secretion system 98.6 4.5E-06 1.5E-10 70.5 18.2 188 57-255 18-238 (282)
147 2lni_A Stress-induced-phosphop 98.6 1.1E-06 3.6E-11 66.2 13.3 98 44-143 15-112 (133)
148 1elw_A TPR1-domain of HOP; HOP 98.6 6.2E-07 2.1E-11 65.8 11.6 97 10-110 6-102 (118)
149 2c2l_A CHIP, carboxy terminus 98.6 3.5E-07 1.2E-11 79.2 11.7 194 44-254 3-199 (281)
150 3q7a_A Farnesyltransferase alp 98.6 9.5E-05 3.3E-09 64.7 26.7 176 162-383 65-258 (349)
151 2e2e_A Formate-dependent nitri 98.6 3.7E-07 1.3E-11 72.9 10.9 123 55-181 20-145 (177)
152 2xcb_A PCRH, regulatory protei 98.6 6E-07 2E-11 68.6 11.2 96 11-110 21-116 (142)
153 4b4t_Q 26S proteasome regulato 98.6 1.4E-05 4.8E-10 74.2 22.6 207 15-221 11-251 (434)
154 1na0_A Designed protein CTPR3; 98.5 2.6E-06 9E-11 63.1 14.0 95 369-466 11-105 (125)
155 3sz7_A HSC70 cochaperone (SGT) 98.5 1.1E-06 3.9E-11 69.0 12.2 98 9-110 12-109 (164)
156 2fbn_A 70 kDa peptidylprolyl i 98.5 1E-07 3.4E-12 77.9 6.1 124 14-142 10-149 (198)
157 4b4t_Q 26S proteasome regulato 98.5 7.3E-06 2.5E-10 76.1 19.3 171 118-288 58-243 (434)
158 3q49_B STIP1 homology and U bo 98.5 8.1E-07 2.8E-11 67.4 10.6 99 7-109 8-106 (137)
159 3dss_A Geranylgeranyl transfer 98.5 3.6E-05 1.2E-09 67.0 22.0 186 19-212 40-264 (331)
160 2vyi_A SGTA protein; chaperone 98.5 2.5E-06 8.4E-11 63.8 13.3 92 371-465 16-107 (131)
161 4gcn_A Protein STI-1; structur 98.5 4.7E-07 1.6E-11 67.6 8.3 96 11-109 11-112 (127)
162 2fbn_A 70 kDa peptidylprolyl i 98.5 2E-06 6.8E-11 70.1 12.4 128 11-141 41-183 (198)
163 1elr_A TPR2A-domain of HOP; HO 98.5 1.3E-06 4.5E-11 65.4 10.3 96 11-110 7-109 (131)
164 3sz7_A HSC70 cochaperone (SGT) 98.5 1.9E-06 6.4E-11 67.8 11.4 100 44-145 10-109 (164)
165 2kck_A TPR repeat; tetratricop 98.4 2.1E-06 7.3E-11 62.2 10.9 99 44-143 5-105 (112)
166 4gcn_A Protein STI-1; structur 98.4 4.2E-06 1.5E-10 62.3 12.3 104 369-478 10-121 (127)
167 3upv_A Heat shock protein STI1 98.4 5.6E-06 1.9E-10 61.6 12.9 97 368-467 5-101 (126)
168 1elw_A TPR1-domain of HOP; HOP 98.4 9.4E-06 3.2E-10 59.3 13.8 97 367-466 4-100 (118)
169 2xev_A YBGF; tetratricopeptide 98.4 7.3E-06 2.5E-10 61.2 13.3 99 11-110 5-106 (129)
170 2dba_A Smooth muscle cell asso 98.4 2.8E-06 9.6E-11 65.3 11.2 96 45-142 28-126 (148)
171 1wao_1 Serine/threonine protei 98.4 3.7E-07 1.3E-11 85.4 6.7 124 11-139 9-134 (477)
172 2dba_A Smooth muscle cell asso 98.4 1.2E-05 4.2E-10 61.6 14.0 98 366-467 27-128 (148)
173 1hxi_A PEX5, peroxisome target 98.3 4.9E-06 1.7E-10 61.3 10.6 97 46-144 18-114 (121)
174 3ro3_A PINS homolog, G-protein 98.3 1.3E-05 4.4E-10 62.5 13.3 102 153-254 51-158 (164)
175 3q49_B STIP1 homology and U bo 98.3 3.2E-05 1.1E-09 58.3 14.9 95 116-213 10-104 (137)
176 3ro3_A PINS homolog, G-protein 98.3 8.2E-06 2.8E-10 63.6 11.7 134 333-466 11-157 (164)
177 3dss_A Geranylgeranyl transfer 98.3 0.0014 4.9E-08 57.0 26.3 165 163-373 41-233 (331)
178 3k9i_A BH0479 protein; putativ 98.3 2.6E-06 8.8E-11 62.5 7.9 88 21-109 3-90 (117)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 8.6E-06 2.9E-10 75.8 13.2 122 11-135 271-405 (457)
180 1elr_A TPR2A-domain of HOP; HO 98.3 1E-05 3.4E-10 60.4 11.2 95 370-466 7-107 (131)
181 3rkv_A Putative peptidylprolyl 98.3 5E-06 1.7E-10 65.1 9.8 100 10-110 13-127 (162)
182 1ihg_A Cyclophilin 40; ppiase 98.3 8.9E-06 3E-10 73.2 12.3 122 11-134 226-360 (370)
183 3k9i_A BH0479 protein; putativ 98.2 1.6E-06 5.3E-11 63.7 5.9 106 57-163 2-109 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1E-06 3.5E-11 82.1 5.3 96 115-213 317-413 (457)
185 2xev_A YBGF; tetratricopeptide 98.2 4.3E-05 1.5E-09 56.9 12.6 95 48-143 5-104 (129)
186 1wao_1 Serine/threonine protei 98.2 1.8E-06 6.3E-11 80.7 5.9 125 47-175 8-134 (477)
187 3n71_A Histone lysine methyltr 98.2 2.6E-05 8.8E-10 72.5 13.3 123 57-179 321-463 (490)
188 2hr2_A Hypothetical protein; a 98.1 2.2E-05 7.6E-10 59.6 10.4 95 12-107 15-129 (159)
189 2l6j_A TPR repeat-containing p 98.1 1.3E-06 4.3E-11 63.4 3.6 95 8-106 4-104 (111)
190 2kat_A Uncharacterized protein 98.1 1.7E-05 5.7E-10 57.8 9.2 81 25-109 2-82 (115)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 7.8E-06 2.7E-10 72.7 8.3 146 11-180 182-328 (338)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 1.6E-05 5.5E-10 70.7 9.7 114 330-465 178-291 (338)
193 3rkv_A Putative peptidylprolyl 98.0 4.3E-05 1.5E-09 59.7 10.8 69 403-474 63-131 (162)
194 1dce_A Protein (RAB geranylger 98.0 0.0004 1.4E-08 66.2 17.9 134 23-163 44-190 (567)
195 1ihg_A Cyclophilin 40; ppiase 98.0 6.3E-05 2.2E-09 67.6 11.7 90 115-207 273-362 (370)
196 1zu2_A Mitochondrial import re 98.0 1.7E-05 6E-10 60.0 6.6 89 18-110 12-121 (158)
197 1na3_A Designed protein CTPR2; 97.9 7.3E-05 2.5E-09 51.4 9.1 76 11-90 12-87 (91)
198 3n71_A Histone lysine methyltr 97.9 0.00028 9.7E-09 65.5 14.4 131 124-254 318-464 (490)
199 2hr2_A Hypothetical protein; a 97.9 0.00022 7.5E-09 54.2 11.2 95 369-466 13-130 (159)
200 2kat_A Uncharacterized protein 97.9 7.1E-05 2.4E-09 54.4 8.4 80 62-143 2-81 (115)
201 1dce_A Protein (RAB geranylger 97.8 0.0017 5.8E-08 61.9 18.8 136 312-453 89-241 (567)
202 2l6j_A TPR repeat-containing p 97.8 1.9E-05 6.5E-10 57.0 4.3 66 44-110 3-68 (111)
203 1klx_A Cysteine rich protein B 97.7 0.0013 4.4E-08 49.4 13.2 85 377-468 35-127 (138)
204 1klx_A Cysteine rich protein B 97.7 0.001 3.6E-08 49.9 12.5 112 381-504 9-127 (138)
205 1na3_A Designed protein CTPR2; 97.6 0.00045 1.5E-08 47.3 8.9 65 45-110 9-73 (91)
206 3ma5_A Tetratricopeptide repea 97.6 0.00024 8.1E-09 50.0 7.3 63 44-107 6-68 (100)
207 3ma5_A Tetratricopeptide repea 97.5 0.00035 1.2E-08 49.1 7.1 65 77-142 4-68 (100)
208 2kc7_A BFR218_protein; tetratr 97.5 0.00013 4.5E-09 51.2 4.7 59 14-75 6-65 (99)
209 1zu2_A Mitochondrial import re 97.5 0.00037 1.2E-08 52.8 7.1 85 56-142 13-118 (158)
210 3ly7_A Transcriptional activat 97.3 0.0024 8.1E-08 55.9 11.8 75 112-191 274-348 (372)
211 3ly7_A Transcriptional activat 97.2 0.01 3.4E-07 52.0 14.2 74 400-477 274-347 (372)
212 3lvg_A Clathrin heavy chain 1; 97.2 1.5E-06 5.3E-11 77.1 -9.6 217 4-249 50-286 (624)
213 3qww_A SET and MYND domain-con 97.2 0.0018 6.2E-08 59.1 9.6 61 82-142 342-409 (433)
214 3qwp_A SET and MYND domain-con 97.0 0.0036 1.2E-07 57.2 10.2 60 83-142 332-398 (429)
215 3qww_A SET and MYND domain-con 97.0 0.0035 1.2E-07 57.2 10.0 87 129-215 312-411 (433)
216 3lvg_A Clathrin heavy chain 1; 97.0 0.00022 7.4E-09 63.8 1.7 406 4-458 79-532 (624)
217 2kc7_A BFR218_protein; tetratr 97.0 0.0018 6E-08 45.2 6.2 60 51-111 6-66 (99)
218 3u64_A Protein TP_0956; tetrat 97.0 0.036 1.2E-06 46.5 14.6 97 130-230 178-282 (301)
219 3qwp_A SET and MYND domain-con 96.9 0.0079 2.7E-07 55.0 11.7 95 122-216 294-401 (429)
220 3bee_A Putative YFRE protein; 96.9 0.0039 1.3E-07 42.7 7.2 49 24-75 25-73 (93)
221 4ady_A RPN2, 26S proteasome re 96.8 0.46 1.6E-05 47.4 30.3 266 196-476 384-664 (963)
222 3bee_A Putative YFRE protein; 96.7 0.011 3.7E-07 40.5 8.1 68 44-112 5-75 (93)
223 1wy6_A Hypothetical protein ST 96.5 0.13 4.4E-06 37.1 13.2 137 310-470 21-157 (172)
224 3mkq_B Coatomer subunit alpha; 96.4 0.22 7.5E-06 38.3 15.0 44 57-106 17-60 (177)
225 1pc2_A Mitochondria fission pr 96.4 0.034 1.2E-06 41.6 9.6 65 365-431 30-99 (152)
226 3mkq_A Coatomer beta'-subunit; 96.4 0.1 3.4E-06 52.6 16.5 130 49-212 633-762 (814)
227 3mkq_A Coatomer beta'-subunit; 96.3 0.041 1.4E-06 55.4 13.4 130 300-464 633-762 (814)
228 4ady_A RPN2, 26S proteasome re 96.3 1 3.5E-05 44.9 29.7 259 235-502 384-657 (963)
229 1pc2_A Mitochondria fission pr 96.3 0.035 1.2E-06 41.6 9.1 31 78-108 30-63 (152)
230 4h7y_A Dual specificity protei 96.0 0.12 4.1E-06 38.2 10.7 114 365-482 11-137 (161)
231 2v5f_A Prolyl 4-hydroxylase su 95.9 0.053 1.8E-06 38.0 8.6 64 46-109 6-75 (104)
232 2v5f_A Prolyl 4-hydroxylase su 95.9 0.05 1.7E-06 38.1 8.4 63 369-431 7-74 (104)
233 4h7y_A Dual specificity protei 95.9 0.076 2.6E-06 39.2 9.1 104 7-113 12-127 (161)
234 3mkq_B Coatomer subunit alpha; 95.8 0.45 1.6E-05 36.6 16.0 130 87-251 12-141 (177)
235 3u64_A Protein TP_0956; tetrat 95.8 0.052 1.8E-06 45.6 9.0 91 24-115 179-277 (301)
236 4b4t_P 26S proteasome regulato 95.3 1.7 5.8E-05 39.8 19.8 101 153-253 139-246 (445)
237 1nzn_A CGI-135 protein, fissio 94.9 0.29 9.9E-06 35.2 9.3 18 90-107 84-101 (126)
238 1nzn_A CGI-135 protein, fissio 94.6 0.35 1.2E-05 34.8 9.1 86 383-473 17-107 (126)
239 2ff4_A Probable regulatory pro 94.5 2.3 7.8E-05 38.1 16.5 75 406-481 174-253 (388)
240 1wy6_A Hypothetical protein ST 94.1 1.2 4E-05 32.3 16.7 140 91-257 18-157 (172)
241 4fhn_B Nucleoporin NUP120; pro 93.9 3.2 0.00011 43.4 18.4 51 14-71 818-868 (1139)
242 2ff4_A Probable regulatory pro 92.6 0.33 1.1E-05 43.6 7.8 70 47-117 173-247 (388)
243 1v54_E Cytochrome C oxidase po 92.6 1.3 4.5E-05 30.0 8.4 49 60-108 25-73 (109)
244 4gns_B Protein CSD3, chitin bi 92.3 0.74 2.5E-05 44.9 10.1 126 49-178 252-398 (754)
245 4b4t_P 26S proteasome regulato 92.2 6.8 0.00023 35.8 20.3 63 189-253 140-205 (445)
246 4fhn_B Nucleoporin NUP120; pro 91.6 8.3 0.00028 40.4 17.7 146 50-202 817-987 (1139)
247 1v54_E Cytochrome C oxidase po 91.1 2.5 8.5E-05 28.7 9.0 62 95-158 25-86 (109)
248 4gns_B Protein CSD3, chitin bi 90.6 2.4 8.1E-05 41.5 11.6 127 84-212 252-397 (754)
249 3o48_A Mitochondria fission 1 90.4 3.5 0.00012 29.8 9.4 43 314-356 61-103 (134)
250 4b4t_R RPN7, 26S proteasome re 90.3 2.1 7.2E-05 39.0 10.5 99 46-144 132-237 (429)
251 1qsa_A Protein (soluble lytic 89.5 15 0.00052 35.2 27.7 331 82-466 9-347 (618)
252 3ffl_A Anaphase-promoting comp 89.2 3.2 0.00011 31.4 8.8 65 297-361 21-93 (167)
253 1zbp_A Hypothetical protein VP 88.9 6.9 0.00023 32.4 11.3 53 55-108 7-59 (273)
254 3ffl_A Anaphase-promoting comp 88.1 4.4 0.00015 30.7 9.0 64 8-72 20-90 (167)
255 3o48_A Mitochondria fission 1 88.1 5.9 0.0002 28.7 9.6 45 98-142 61-105 (134)
256 2y69_E Cytochrome C oxidase su 88.0 6 0.0002 28.6 9.0 49 96-144 69-117 (152)
257 2y69_E Cytochrome C oxidase su 87.3 6.6 0.00023 28.4 9.1 62 382-445 68-129 (152)
258 4b4t_R RPN7, 26S proteasome re 85.3 13 0.00045 33.8 12.5 61 82-142 133-195 (429)
259 1zbp_A Hypothetical protein VP 84.9 3.3 0.00011 34.3 7.4 58 15-75 4-61 (273)
260 1y8m_A FIS1; mitochondria, unk 83.6 11 0.00038 27.7 11.5 63 294-356 37-102 (144)
261 3lpz_A GET4 (YOR164C homolog); 83.4 22 0.00074 30.8 23.2 142 54-215 64-216 (336)
262 2wpv_A GET4, UPF0363 protein Y 83.0 21 0.00073 30.5 19.9 175 155-396 37-217 (312)
263 3esl_A Checkpoint serine/threo 82.5 8.8 0.0003 30.2 8.5 55 381-436 93-148 (202)
264 1y8m_A FIS1; mitochondria, unk 80.3 15 0.00051 27.0 11.6 22 444-465 83-104 (144)
265 3txn_A 26S proteasome regulato 79.2 35 0.0012 30.5 20.6 57 268-324 106-167 (394)
266 2wpv_A GET4, UPF0363 protein Y 74.9 39 0.0013 28.9 22.9 117 117-249 35-158 (312)
267 2p58_C Putative type III secre 72.5 18 0.00062 24.5 6.5 87 380-476 20-106 (116)
268 3lpz_A GET4 (YOR164C homolog); 71.8 49 0.0017 28.6 22.6 22 117-138 37-58 (336)
269 4b4t_S RPN3, 26S proteasome re 70.2 69 0.0024 29.7 14.9 61 82-142 233-297 (523)
270 4a1g_A Mitotic checkpoint seri 68.8 34 0.0011 25.5 9.0 53 421-473 83-136 (152)
271 4aez_C MAD3, mitotic spindle c 68.4 29 0.00099 27.8 8.2 54 420-473 131-185 (223)
272 2d2s_A Exocyst complex compone 68.4 20 0.0007 29.2 7.6 27 116-142 92-118 (235)
273 2uwj_G Type III export protein 67.7 26 0.00088 23.8 7.0 51 412-468 48-98 (115)
274 1wdy_A 2-5A-dependent ribonucl 67.1 35 0.0012 28.3 9.5 48 378-426 190-239 (285)
275 3eiq_C Programmed cell death p 64.5 74 0.0025 27.9 16.5 66 299-366 220-287 (358)
276 2wvi_A Mitotic checkpoint seri 62.3 49 0.0017 25.1 8.9 52 422-473 79-131 (164)
277 3c1d_A Protein ORAA, regulator 61.7 49 0.0017 24.9 9.6 109 384-498 47-155 (159)
278 2d2s_A Exocyst complex compone 61.6 36 0.0012 27.7 7.8 26 153-178 93-118 (235)
279 4aez_C MAD3, mitotic spindle c 60.9 63 0.0022 25.9 9.9 140 6-150 27-184 (223)
280 3esl_A Checkpoint serine/threo 59.5 63 0.0021 25.4 10.7 56 164-223 92-148 (202)
281 4b4t_S RPN3, 26S proteasome re 59.3 1.1E+02 0.0039 28.3 12.3 125 45-177 231-367 (523)
282 3d5l_A Regulatory protein RECX 58.0 56 0.0019 26.3 8.4 49 385-435 94-142 (221)
283 2ion_A PDCD4, programmed cell 56.5 47 0.0016 24.8 7.1 66 48-114 12-79 (152)
284 3l6a_A Eukaryotic translation 54.8 1.1E+02 0.0037 26.9 10.3 73 12-86 16-89 (364)
285 2ijq_A Hypothetical protein; s 53.9 68 0.0023 24.2 7.9 51 57-107 44-102 (161)
286 2nsz_A Programmed cell death p 53.8 59 0.002 23.4 8.5 66 48-114 10-77 (129)
287 4a1g_A Mitotic checkpoint seri 51.7 72 0.0025 23.8 10.7 47 98-144 83-130 (152)
288 1n11_A Ankyrin; clathrin, BAND 51.3 1.4E+02 0.0047 26.8 12.8 49 52-104 18-68 (437)
289 1wdy_A 2-5A-dependent ribonucl 49.6 54 0.0018 27.1 7.6 22 236-257 190-211 (285)
290 2uwj_G Type III export protein 49.0 60 0.002 22.1 8.6 49 125-180 49-97 (115)
291 2p58_C Putative type III secre 48.0 63 0.0021 22.0 9.6 13 126-138 51-63 (116)
292 1ug3_A EIF4GI, eukaryotic prot 48.0 95 0.0032 27.0 8.9 25 83-107 14-38 (339)
293 2ion_A PDCD4, programmed cell 47.7 84 0.0029 23.4 10.1 62 119-182 13-76 (152)
294 3bu8_A Telomeric repeat-bindin 47.5 78 0.0027 25.1 7.0 22 87-108 121-142 (235)
295 3kae_A CDC27, possible protein 46.0 98 0.0033 23.6 9.6 49 341-396 43-91 (242)
296 2ijq_A Hypothetical protein; s 45.9 91 0.0031 23.5 7.1 52 415-466 44-103 (161)
297 2bwb_A Ubiquitin-like protein 45.2 40 0.0014 18.9 4.9 34 460-497 10-43 (46)
298 2wvi_A Mitotic checkpoint seri 43.4 1E+02 0.0036 23.2 9.6 50 64-113 79-129 (164)
299 4gq2_M Nucleoporin NUP120; bet 43.4 1.7E+02 0.0057 30.0 11.0 50 116-165 898-950 (950)
300 3kae_A CDC27, possible protein 42.2 1.1E+02 0.0039 23.3 9.0 80 20-112 14-94 (242)
301 2dah_A Ubiquilin-3; UBA domain 42.1 51 0.0017 19.3 5.7 37 462-502 14-50 (54)
302 2jy5_A Ubiquilin-1; UBA, alter 41.9 50 0.0017 19.1 4.9 33 461-497 16-48 (52)
303 4g8k_A 2-5A-dependent ribonucl 41.5 1.7E+02 0.0057 25.0 9.9 49 155-208 26-78 (337)
304 3e3v_A Regulatory protein RECX 40.3 1.2E+02 0.0042 23.2 9.1 50 348-400 50-99 (177)
305 2keb_A DNA polymerase subunit 40.3 83 0.0028 21.2 5.7 31 422-452 28-58 (101)
306 2nsz_A Programmed cell death p 40.2 1E+02 0.0034 22.1 11.4 62 119-182 11-74 (129)
307 3jxi_A Vanilloid receptor-rela 39.0 73 0.0025 26.0 6.7 53 304-356 10-71 (260)
308 3jxi_A Vanilloid receptor-rela 38.9 36 0.0012 27.9 4.7 22 232-253 229-250 (260)
309 4ets_A Ferric uptake regulatio 38.5 57 0.0019 24.6 5.2 59 178-241 25-85 (162)
310 2knz_A Ubiquilin-4; cytoplasm, 38.5 58 0.002 18.9 5.1 35 460-498 14-48 (53)
311 2yru_A Steroid receptor RNA ac 38.5 1E+02 0.0035 21.7 8.5 53 202-254 38-90 (118)
312 3b7b_A Euchromatic histone-lys 38.2 1.5E+02 0.0051 23.5 9.0 18 271-288 217-234 (237)
313 1wr1_B Ubiquitin-like protein 38.1 64 0.0022 19.2 4.7 34 461-498 21-54 (58)
314 2b7e_A PRE-mRNA processing pro 37.5 28 0.00094 20.9 2.5 29 168-196 3-31 (59)
315 2dna_A Unnamed protein product 37.5 63 0.0022 20.0 4.2 35 461-499 23-57 (67)
316 3eu9_A Huntingtin-interacting 37.0 68 0.0023 25.5 6.1 51 16-70 14-64 (240)
317 1vej_A Riken cDNA 4931431F19; 37.0 61 0.0021 20.6 4.2 34 462-499 34-67 (74)
318 1k1a_A B-cell lymphoma 3-encod 36.6 1.5E+02 0.005 23.6 8.1 186 51-249 12-204 (241)
319 3aji_A 26S proteasome non-ATPa 36.0 58 0.002 25.9 5.5 19 15-33 10-28 (231)
320 2cos_A Serine/threonine protei 35.7 55 0.0019 19.1 3.4 11 490-500 38-48 (54)
321 1ya0_A SMG-7 transcript varian 35.7 2.1E+02 0.0071 26.5 9.4 64 23-90 167-230 (497)
322 4ets_A Ferric uptake regulatio 35.2 1.2E+02 0.004 22.9 6.5 44 302-345 38-83 (162)
323 2cwy_A Hypothetical protein TT 34.9 88 0.003 20.9 5.1 16 22-37 15-30 (94)
324 3e3v_A Regulatory protein RECX 34.7 1.5E+02 0.0052 22.6 11.3 51 62-113 50-100 (177)
325 2zu6_B Programmed cell death p 33.9 2.2E+02 0.0076 24.2 14.2 66 154-224 169-236 (307)
326 1ug3_A EIF4GI, eukaryotic prot 32.0 2.5E+02 0.0086 24.3 11.6 25 48-72 14-38 (339)
327 3hra_A Ankyrin repeat family p 31.2 1.3E+02 0.0044 23.0 6.7 13 236-248 13-25 (201)
328 2xig_A Ferric uptake regulatio 31.1 1.6E+02 0.0054 21.7 7.4 62 175-241 16-77 (150)
329 3txn_A 26S proteasome regulato 30.8 2.9E+02 0.0098 24.6 30.0 63 191-253 104-167 (394)
330 3kea_A K1L; tropism, ANK repea 30.4 1.8E+02 0.006 24.2 7.7 184 232-440 35-225 (285)
331 2cwb_A Chimera of immunoglobul 30.3 94 0.0032 21.5 4.6 35 460-498 69-103 (108)
332 3ltj_A Alpharep-4; protein eng 30.2 1.9E+02 0.0064 22.2 18.3 170 44-238 27-196 (201)
333 2zu6_B Programmed cell death p 30.0 2.6E+02 0.0089 23.8 14.9 57 299-356 169-227 (307)
334 3hra_A Ankyrin repeat family p 29.6 1.3E+02 0.0043 23.1 6.3 14 162-175 114-127 (201)
335 2qx5_A Nucleoporin NIC96; mRNA 29.5 4E+02 0.014 25.8 14.9 21 86-106 300-320 (661)
336 2xig_A Ferric uptake regulatio 29.1 1.7E+02 0.0059 21.5 7.3 59 70-129 17-75 (150)
337 3eyy_A Putative iron uptake re 28.8 1.7E+02 0.0059 21.4 6.5 58 70-129 9-66 (145)
338 2fe3_A Peroxide operon regulat 28.2 1.7E+02 0.006 21.3 7.4 58 71-129 13-70 (145)
339 2f6m_A Suppressor protein STP2 28.2 53 0.0018 20.2 2.7 26 50-75 7-32 (65)
340 2etb_A Transient receptor pote 28.0 1.5E+02 0.0053 23.9 6.8 54 303-356 6-68 (256)
341 3eyy_A Putative iron uptake re 27.8 1.6E+02 0.0055 21.5 6.1 60 175-240 8-67 (145)
342 3ygs_P Procaspase 9; apoptosis 27.8 1.2E+02 0.0042 20.3 5.0 37 417-457 51-87 (97)
343 3bqo_A Telomeric repeat-bindin 27.2 90 0.0031 24.4 4.5 27 49-75 121-147 (211)
344 1mzb_A Ferric uptake regulatio 27.2 1.7E+02 0.006 21.0 6.1 61 176-241 8-69 (136)
345 2w57_A Ferric uptake regulatio 27.0 1.9E+02 0.0064 21.3 6.4 62 175-241 6-68 (150)
346 1wji_A Tudor domain containing 27.0 77 0.0026 19.3 3.4 14 484-497 31-44 (63)
347 2f6m_A Suppressor protein STP2 27.0 94 0.0032 19.1 3.7 44 406-450 5-48 (65)
348 3mwm_A ZUR, putative metal upt 26.7 91 0.0031 22.7 4.5 43 158-200 20-62 (139)
349 2o03_A Probable zinc uptake re 26.6 1E+02 0.0035 22.1 4.7 42 159-200 18-59 (131)
350 1mzb_A Ferric uptake regulatio 26.2 1.8E+02 0.0063 20.9 6.3 58 71-129 9-67 (136)
351 2fe3_A Peroxide operon regulat 26.1 1.9E+02 0.0066 21.1 7.6 62 175-241 11-72 (145)
352 3mwm_A ZUR, putative metal upt 25.9 1.1E+02 0.0037 22.3 4.8 32 51-82 19-50 (139)
353 4gq2_M Nucleoporin NUP120; bet 25.5 4.7E+02 0.016 26.7 10.9 47 440-486 899-949 (950)
354 2rfa_A Transient receptor pote 24.8 2.5E+02 0.0087 22.0 8.0 27 231-257 157-183 (232)
355 2o03_A Probable zinc uptake re 24.7 1.4E+02 0.0049 21.3 5.2 45 85-129 15-59 (131)
356 1oai_A Nuclear RNA export fact 24.5 54 0.0018 19.6 2.3 22 129-150 34-55 (59)
357 3mv2_A Coatomer subunit alpha; 24.4 3.4E+02 0.012 23.3 12.8 48 97-144 187-236 (325)
358 4fke_A Aminopeptidase N; zinc 24.3 5.8E+02 0.02 25.9 16.6 172 79-255 685-861 (909)
359 3ygs_P Procaspase 9; apoptosis 24.2 1.2E+02 0.0042 20.3 4.4 38 59-100 51-88 (97)
360 2fu4_A Ferric uptake regulatio 24.1 1.4E+02 0.0049 18.9 6.3 14 96-109 33-46 (83)
361 2r9g_A AAA ATPase, central reg 24.0 2.6E+02 0.009 21.9 9.8 44 301-345 16-62 (204)
362 2g3q_A Protein YBL047C; endocy 23.9 96 0.0033 16.8 3.3 33 460-497 7-39 (43)
363 2pnn_A Transient receptor pote 23.6 2E+02 0.0068 23.5 6.8 53 304-356 18-79 (273)
364 2w57_A Ferric uptake regulatio 23.5 2E+02 0.0067 21.2 5.9 43 87-129 23-66 (150)
365 3qil_A Clathrin heavy chain 1; 23.5 1.1E+02 0.0036 21.7 3.9 53 47-102 34-86 (125)
366 3ltj_A Alpharep-4; protein eng 22.8 2.6E+02 0.0088 21.4 19.2 155 78-254 26-180 (201)
367 2yru_A Steroid receptor RNA ac 22.7 2.1E+02 0.007 20.2 5.4 42 67-108 48-89 (118)
368 1oxz_A ADP-ribosylation factor 22.5 2.7E+02 0.0093 21.5 9.9 22 14-35 37-61 (186)
369 1otr_A Protein CUE2; protein-p 22.3 1.2E+02 0.0041 17.3 5.1 43 454-502 4-46 (49)
370 3l6a_A Eukaryotic translation 22.3 4E+02 0.014 23.4 11.2 26 83-108 15-40 (364)
371 3i5p_A Nucleoporin NUP170; hel 22.1 4.9E+02 0.017 24.3 12.9 36 437-472 216-251 (525)
372 3eu9_A Huntingtin-interacting 21.9 2.9E+02 0.0099 21.6 7.9 8 236-243 17-24 (240)
373 2qx5_A Nucleoporin NIC96; mRNA 21.9 5.5E+02 0.019 24.8 22.6 16 449-464 549-564 (661)
374 2ko4_A Mediator of RNA polymer 21.6 1.7E+02 0.0057 18.8 4.7 37 35-71 26-62 (81)
375 3f3f_C Nucleoporin NUP85; stru 21.6 3.8E+02 0.013 25.2 8.3 87 154-246 482-570 (570)
376 3bge_A Predicted ATPase; struc 21.6 2.9E+02 0.01 21.6 9.2 42 302-343 10-54 (201)
377 1z96_A DNA-damage, UBA-domain 20.6 1.1E+02 0.0036 16.1 3.7 32 461-497 8-39 (40)
378 3eiq_C Programmed cell death p 20.4 4.3E+02 0.015 23.1 17.1 76 153-233 219-296 (358)
379 3cqc_A Nuclear pore complex pr 20.1 2.7E+02 0.0091 23.2 6.5 24 119-142 38-61 (270)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-42 Score=335.69 Aligned_cols=472 Identities=11% Similarity=-0.008 Sum_probs=258.9
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+...|+.++..|.+.|++++|+.+|+++....| +..++..++.+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITG----NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC----CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 344455666666666666666666666654432 4455556666666666666666666665433 4555566666
Q ss_pred HHHHHhcCChhHHHHHHHHhhh-C--------------CCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchH
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQ-F--------------NCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRI 151 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (504)
+.+|.+.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|...|+++....+. +.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK--CY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch--hh
Confidence 6666666666666666653211 1 12234556666666666666666666666665543211 11
Q ss_pred HHHHHHHHHHhhcCCHHHHH--HH-HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 043204 152 QSLNLLMDVLCQCRRSDLAL--HV-FQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIY 228 (504)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (504)
..+..+...+...++.+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++ ... .++..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~----~~~--~~~~~~~ 308 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----NGL--EKSSDLL 308 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS----TTG--GGCHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh----hcC--CchHHHH
Confidence 22222222111111110000 00 111111111111222333344455566666666666655 222 3556666
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 043204 229 RTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYN 308 (504)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 308 (504)
+.++.+|.+.|++++|.++|+++.+.+ |.+......++..+...|++++|..+++.+..... .+..+++.++..|.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHH
Confidence 666666666666666666666666543 33444455555555666666666666666654432 245566666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 043204 309 EGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVM 388 (504)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 388 (504)
.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|++++... +.+..+|..++.+|.+.|++++|.+
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666654322 45566666666666666666666666633322 3355566666666666666666666
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhc----CcCCC--cchHHHHHHHHHccCCHHHHHHHHH
Q 043204 389 YLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIR----SYWPC--VETYNVLIRGLCSIGKQYEAVMWLE 462 (504)
Q Consensus 389 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 462 (504)
+|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++
T Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 463 YLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666653 2234556666666666666666666666666554 33454 4566666666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 463 EMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 463 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
++.+.+ +.+..+|..+..+|...|+ +++|.++++++.+
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKI-PGLAITHLHESLA 578 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHh
Confidence 666543 2345566666666555555 6666666666543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-39 Score=314.22 Aligned_cols=457 Identities=11% Similarity=-0.041 Sum_probs=370.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEA 99 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (504)
..|.+..+...++.+.. ++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 65 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSL------SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCccCCCCCccccchH------HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 34444445555544332 37888999999999999999999999999865 46778899999999999999999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC--------------CCcchHHHHHHHHHHHhhcC
Q 043204 100 VSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW--------------EVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~ 165 (504)
..+|+.+... +++..+++.++.+|.+.|++++|..+|+++.... +.+++..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999988643 5678899999999999999999999998644332 23457889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH--H-HHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchh
Q 043204 166 RSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATH--L-LYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQ 242 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (504)
++++|.++|++|.+.+. .+...+..+...+...+..+.+.. + +..+ ...+..+...+|+.++..|.+.|+++
T Consensus 215 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY----SKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHH----HGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCccc----ccchHHHHHHHHHHHHHHHcCcchHH
Confidence 99999999999988642 245555556554443333222211 1 3333 44455556677888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043204 243 DAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEM 322 (504)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (504)
+|.++|+++.+. |++......++..+...|++++|..+|+++.+.+.. +..++..++.++.+.|++++|..+++++
T Consensus 290 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 290 RAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998775 466677777889999999999999999999987754 7889999999999999999999999999
Q ss_pred HHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc
Q 043204 323 RTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN 402 (504)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 402 (504)
.+.. +.+..+++.++.+|.+.|++++|.++|++++... +.+..+|+.++.+|.+.|++++|.++|+++.+. .+.+
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 440 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGT 440 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTC
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cccc
Confidence 8764 3478899999999999999999999999955543 446789999999999999999999999999874 3457
Q ss_pred hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC--HHHH
Q 043204 403 GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ----AKLPD--ISVW 476 (504)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~ 476 (504)
..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 8899999999999999999999999999864 457889999999999999999999999999876 67888 7899
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 477 SSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 477 ~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
..+..+|++.|+ +++|.++++++.+
T Consensus 520 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 520 ANLGHAYRKLKM-YDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 999999888877 9999999999875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4e-29 Score=230.45 Aligned_cols=363 Identities=15% Similarity=0.052 Sum_probs=216.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
+...+.+.|++++|++.|+.+.+..|+ +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 456677788888888888888888776 66677777788888888888888888877765 66777788888888888
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHH
Q 043204 94 GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHV 173 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (504)
|++++|+..|+++.+.. +.+..+|..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 88888888888877654 2234456666666666777777766666665432 11233445555666666666666666
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 174 FQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 174 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
|+++.+.. +.+..+|..+...+...|++++|...|+++ ..... .+...+..+...+...|++++|...+++...
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA----VTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH----HHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66665542 123455666666666666666666666665 22221 1344555555556666666666665555554
Q ss_pred cCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhh
Q 043204 254 KGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVM 333 (504)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (504)
... .+..++..+...+...|++++|...|+++.+.++. +..+
T Consensus 232 ~~p-------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 273 (388)
T 1w3b_A 232 LSP-------------------------------------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDA 273 (388)
T ss_dssp HCT-------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHH
T ss_pred hCc-------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHH
Confidence 321 13444555555555556666666655555554322 3444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 043204 334 YEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGL 413 (504)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 413 (504)
+..+...+.+.|++++|...|++++... +.+..++..+...+...|++++|.+.++++.+. .+.+..++..+..+|
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 5555555555555555555555533332 334445555555555555555555555555432 122334455555555
Q ss_pred hhcCcHHHHHHHHHHHHh
Q 043204 414 CRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~ 431 (504)
.+.|++++|.+.++++.+
T Consensus 350 ~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 555555555555555554
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3e-32 Score=254.52 Aligned_cols=203 Identities=16% Similarity=0.150 Sum_probs=176.3
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCC---------HHHH
Q 043204 281 KSLINEALIRGGIPS-LASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGM---------VDEA 350 (504)
Q Consensus 281 ~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a 350 (504)
..+.+.+.+++..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 334444444444333 346788899999999999999999999999999999999999999987654 6889
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHH
Q 043204 351 LEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEML 430 (504)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (504)
.++|++ |...|+.||..||+++|.+|++.|++++|.++|++|.+. |+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 90 ~~lf~~-M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 90 FDIFKQ-MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHH-HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999998 889999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred hcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043204 431 IRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCC 485 (504)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 485 (504)
+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988775
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=6e-28 Score=222.61 Aligned_cols=378 Identities=15% Similarity=0.064 Sum_probs=309.8
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcch
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESK 130 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (504)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3556778899999999999988776 5566777888888899999999999998887765 4457788999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043204 131 LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLY 210 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (504)
+++|...|+++.... +.+..+|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999887542 22455788899999999999999999999887632 234566777788888899999999998
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHc
Q 043204 211 SMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIR 290 (504)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (504)
++ .... +.+..+|..+..++...|++++|...|+++.+.+..
T Consensus 160 ~a----l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------- 201 (388)
T 1w3b_A 160 KA----IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--------------------------------- 201 (388)
T ss_dssp HH----HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------------------------------
T ss_pred HH----HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------------
Confidence 88 3432 225778888999999999999999999988876321
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHH
Q 043204 291 GGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVY 370 (504)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (504)
+...+..+...+...|++++|...+++.....+. +..++..+...|...|++++|...|++++... +.+..+|
T Consensus 202 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 274 (388)
T 1w3b_A 202 ----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAY 274 (388)
T ss_dssp ----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHH
T ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Confidence 4567778888888999999999999999886533 67889999999999999999999999966543 3356789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc
Q 043204 371 NILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS 450 (504)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (504)
..+..++.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+..++.+
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 99999999999999999999999875 35577889999999999999999999999999863 4457789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 043204 451 IGKQYEAVMWLEEMISQAKLPDI-SVWSSLVASV 483 (504)
Q Consensus 451 ~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~ 483 (504)
.|++++|.+.++++.+ ..|+. ..+..+...+
T Consensus 352 ~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp TTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHH
Confidence 9999999999999995 45654 4555554443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=7e-31 Score=245.33 Aligned_cols=187 Identities=12% Similarity=0.127 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHhhCCCC
Q 043204 152 QSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR---------LNEATHLLYSMFWRISQKGSG 222 (504)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 222 (504)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++| ...|+.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M----~~~G~~ 102 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM----IVDKVV 102 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH----HHTTCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH----HHhCCC
Confidence 34666777777777777777777777777777777777777777765443 56677777777 677777
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 043204 223 EDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAM 302 (504)
Q Consensus 223 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (504)
||..||+++|.+|++.|++++|.++|++|.+.|+. ||..+|+.+
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~------------------------------------Pd~~tyn~l 146 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ------------------------------------PRLRSYGPA 146 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC------------------------------------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------------------------------CccceehHH
Confidence 77777777777777777777777777777776654 677777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 043204 303 AIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD 379 (504)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (504)
|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+.++|.+++++ |...+..|+..||+.++..++.
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~-Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR-LRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH-HHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777777777 7777777777777777777654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-25 Score=211.57 Aligned_cols=450 Identities=10% Similarity=-0.040 Sum_probs=282.1
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+.+.|++++|+..|+++.+.. |+..+|..+..++...|++++|...++++.+.+ +.+..++..+..+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34566788899999999999999999985 478899999999999999999999999999887 6677889999999
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDL 169 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (504)
+...|++++|...|+.+.+.+.. +......++..+........+.+.+..+...... |+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCch
Confidence 99999999999999999887643 3333344444444433333333333211100000 000000000000000000000
Q ss_pred HHHHHHHhhhCCC---------CCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHHH---h--hCCC----CcCHHHH
Q 043204 170 ALHVFQEMDFQGC---------YPDRESYHILMKGLCN---DRRLNEATHLLYSMFWRI---S--QKGS----GEDIVIY 228 (504)
Q Consensus 170 a~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~---~--~~~~----~~~~~~~ 228 (504)
...+...+..... +.+...+......+.. .|++++|...|+++.... . .... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 0000000000000 0012222222222222 444444444444442100 0 0000 1123344
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 043204 229 RTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYN 308 (504)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 308 (504)
..+..++...|++++|...++++.+.. |. ...+..+...+...|+++.|...++.+...... +...+..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 444444444444444444444444432 12 333333344444444444444444444433222 56678888888999
Q ss_pred cCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 043204 309 EGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVM 388 (504)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 388 (504)
.|++++|...++++.+.... +...+..+...+...|++++|...+++++... +.+...+..+...|...|++++|..
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999987544 67788899999999999999999999866554 3355688888999999999999999
Q ss_pred HHHHHHHhcCCCCc----hhhHHHHHHHHhh---cCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHH
Q 043204 389 YLKKMSKQVGCVAN----GETYGILVDGLCR---DGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWL 461 (504)
Q Consensus 389 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 461 (504)
.++++.+...-.++ ...+..+..+|.. .|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99998865222222 3378889999999 999999999999998864 345677888999999999999999999
Q ss_pred HHHHHcCCCCCHHHH
Q 043204 462 EEMISQAKLPDISVW 476 (504)
Q Consensus 462 ~~~~~~~~~p~~~~~ 476 (504)
+++.+. .|+....
T Consensus 473 ~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 473 EESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHH--CSSHHHH
T ss_pred HHHHHh--ccccHHH
Confidence 999965 4665443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-24 Score=207.25 Aligned_cols=441 Identities=10% Similarity=-0.033 Sum_probs=318.5
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
....+......+.+.|++++|...|+++.+.+ |+..++..+..++.+.|++++|+..|+.+.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45567788889999999999999999999876 688889999999999999999999999988876 345678889999
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
++.+.|++++|...|+++....+ ++......++..+........+.+.+..+...+..|+...+..-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999876543 2333444455555444444444444443333322222222221111111111111
Q ss_pred HHHHHHHHHHHHHhhCCC---------CcCHHHHHHHHHHHHh---cCchhHHHHHHHHHHH-----cCCCC-------C
Q 043204 204 EATHLLYSMFWRISQKGS---------GEDIVIYRTLLFALCD---QGKIQDAMQILEKILR-----KGLKA-------P 259 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~~~-------~ 259 (504)
....+...+ ..... +.+...+......+.. .|++++|...|+++.+ ....| .
T Consensus 160 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 160 SVTSMASFF----GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp CHHHHHHHH----TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred hhHHHHHHH----hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 111111111 11111 1124455555555554 8999999999999988 32222 3
Q ss_pred cchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHH
Q 043204 260 KSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLA 339 (504)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (504)
.......+...+...|+++.|...++.+...... ...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 3445556677888999999999999999988655 788888899999999999999999999987543 6778899999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcH
Q 043204 340 ALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRF 419 (504)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 419 (504)
.+...|++++|...+++++... +.+...+..+...|...|++++|...++.+.+. .+.+...+..+...|...|++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999966544 335668888999999999999999999999875 233567888999999999999
Q ss_pred HHHHHHHHHHHhcCc-CCC----cchHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchh
Q 043204 420 LEASRVLEEMLIRSY-WPC----VETYNVLIRGLCS---IGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLN 491 (504)
Q Consensus 420 ~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 491 (504)
++|.+.++++.+..- .++ ...|..+...+.. .|++++|.+.++++.+.. +.+...+..+...+...|+ ++
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~-~~ 466 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQED-ID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC-HH
Confidence 999999999987531 111 2388999999999 999999999999999753 3345677777787777766 99
Q ss_pred HHHHHHHHhhc
Q 043204 492 VCRKTLEQLSS 502 (504)
Q Consensus 492 ~a~~~~~~~~~ 502 (504)
+|...+++..+
T Consensus 467 ~A~~~~~~a~~ 477 (514)
T 2gw1_A 467 EAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=8.4e-24 Score=203.90 Aligned_cols=432 Identities=12% Similarity=0.024 Sum_probs=319.6
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+.+.|++++|+..|+++.+..|. +..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4566778899999999999999999999887 88999999999999999999999999999887 6778889999999
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC-----CCcchHHHHHHHHHHHhhc
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW-----EVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 164 (504)
+...|++++|...|+.+ .....+. ...+..+...+....|...++.+.... ...|+ ...+..+...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----NTSLASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCC----HHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch----HhHHHHHHHh
Confidence 99999999999999743 3332222 334556667777888999998886531 11222 3344555566
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHhhCCCCc-C-----HHHHH
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRE-SYHILMKGLC--------NDRRLNEATHLLYSMFWRISQKGSGE-D-----IVIYR 229 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~-~-----~~~~~ 229 (504)
.+.+.+...+...... .+... ....+...+. ..|++++|..+++++ ....... + ..++.
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~----l~~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL----LSANTVDDPLRENAALALC 247 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH----HC--CCCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH----HHHCCCcchhhHHHHHHHH
Confidence 6666666555444332 22222 2222222222 224788888888888 4443331 1 23566
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
.+...+...|++++|...++++.+.. |. ......+...+...|+++.|...+..+...... +...+..+...+...
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhc
Confidence 67777888888899999998888763 34 555666677888888999999998888877554 677888888999999
Q ss_pred CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 043204 310 GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMY 389 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (504)
|++++|...++++.+.... +...+..+...+...|++++|...+++++... +.+...+..+...+...|++++|...
T Consensus 324 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999887543 56788899999999999999999999866654 34566888889999999999999999
Q ss_pred HHHHHHhcCCCCc----hhhHHHHHHHHhhc----------CcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHH
Q 043204 390 LKKMSKQVGCVAN----GETYGILVDGLCRD----------GRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQY 455 (504)
Q Consensus 390 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (504)
++++.+...-.++ ...+..+..++... |++++|...++++.+.. +.+...|..+...|.+.|+++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 9998765211111 11234455677777 99999999999999864 345678889999999999999
Q ss_pred HHHHHHHHHHHcC
Q 043204 456 EAVMWLEEMISQA 468 (504)
Q Consensus 456 ~a~~~~~~~~~~~ 468 (504)
+|.+.|++..+..
T Consensus 480 ~A~~~~~~al~~~ 492 (537)
T 3fp2_A 480 EAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999653
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.5e-23 Score=194.85 Aligned_cols=341 Identities=11% Similarity=0.001 Sum_probs=230.4
Q ss_pred HHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043204 26 TALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKN 105 (504)
Q Consensus 26 ~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 105 (504)
.+...|..+....|. +...+..++..+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+.
T Consensus 10 ~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 10 GVDLGTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -------------CH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344445555555444 66677777777777777777777777777654 55666777777777777777777777777
Q ss_pred hhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchH---HHHHHH------------HHHHhhcCCHHHH
Q 043204 106 LSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRI---QSLNLL------------MDVLCQCRRSDLA 170 (504)
Q Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 170 (504)
+.+.+. .+..++..+...|.+.|++++|...|+++....+ .+. ..+..+ ...+...|++++|
T Consensus 86 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 86 VIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 776552 3356677777777777777777777777765421 122 344444 4458889999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 043204 171 LHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEK 250 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (504)
...|+++.+.. +.+..++..+..+|.+.|++++|...|+++. ... +.+..++..+..+|...|++++|...|++
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS----KLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH----HHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998764 3467888999999999999999999999883 332 33678899999999999999999999999
Q ss_pred HHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc
Q 043204 251 ILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPS 330 (504)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (504)
+.... |........ +..+. .......+...+...|++++|...|+++.+.... +
T Consensus 237 ~~~~~--p~~~~~~~~-----------------~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~ 290 (450)
T 2y4t_A 237 CLKLD--QDHKRCFAH-----------------YKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-I 290 (450)
T ss_dssp HHHHC--TTCHHHHHH-----------------HHHHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-S
T ss_pred HHHhC--CChHHHHHH-----------------HHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-c
Confidence 98753 222221111 00000 1122233467777788888888888888875422 2
Q ss_pred ----hhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc-hhh
Q 043204 331 ----LVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN-GET 405 (504)
Q Consensus 331 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 405 (504)
...+..+...+.+.|++++|...+++++... +.+...|..+..+|...|++++|...++++.+. .|+ ...
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~ 365 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH---NENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSCHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcchHHH
Confidence 3467777888888888888888888755543 345678888888888888888888888888753 444 344
Q ss_pred HHHHH
Q 043204 406 YGILV 410 (504)
Q Consensus 406 ~~~l~ 410 (504)
+..+.
T Consensus 366 ~~~l~ 370 (450)
T 2y4t_A 366 REGLE 370 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.8e-23 Score=196.78 Aligned_cols=318 Identities=12% Similarity=0.042 Sum_probs=253.2
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
...+..+...+.+.|++++|+.+|+++.+..|+ +..+|..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 445677889999999999999999999998776 78999999999999999999999999999887 66788899999
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCccH---HHHHHH------------HHHHHhcchHHHHHHHHHHhhcCCCCcchHH
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFNCVNWT---QSFNTL------------LKEMVKESKLEAAHILFLRSCYGWEVKSRIQ 152 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
.+|.+.|++++|.+.|+.+.+.+.. +. ..+..+ ...+...|++++|...|+++.... +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH
Confidence 9999999999999999999887632 23 455554 445889999999999999988653 33567
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHH-
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTL- 231 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l- 231 (504)
.+..+..+|.+.|++++|.++|+++.+.. +.+..++..+..++...|++++|...|+++ ..... .+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~p-~~~~~~~~~~ 252 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC----LKLDQ-DHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCC-ChHHHHHHHH
Confidence 88999999999999999999999998764 347889999999999999999999999998 43322 234444444
Q ss_pred -----------HHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHH
Q 043204 232 -----------LFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYS 300 (504)
Q Consensus 232 -----------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (504)
...+...|++++|...|+++.+... .+... ....+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~-------------------------------~~~~~~ 299 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SIAEY-------------------------------TVRSKE 299 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--SSHHH-------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchHH-------------------------------HHHHHH
Confidence 7788888888888888888877531 11000 034667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 043204 301 AMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILL 374 (504)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (504)
.+...+.+.|++++|...++++.+..+ .+...|..+..+|...|++++|...+++++... +-+...+..+.
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 370 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence 777888888999999999998887642 267888888999999999999999998855532 22344444444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=9e-23 Score=196.67 Aligned_cols=433 Identities=9% Similarity=-0.021 Sum_probs=320.7
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..+|.+.|++++|++.|+.+.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888899999999999999999999887 6788899999999999999999999999998876 3457788999999
Q ss_pred HHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCCH
Q 043204 125 MVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQG--CYPDRESYHILMKGLCNDRRL 202 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 202 (504)
+...|++++|...|+.+... |+.. ...+..+...+....|...++.+.... ..+........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN----GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHHHHhcC----CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999754322 2211 233445566677788999999986641 011111223334445556666
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHh--------cCchhHHHHHHHHHHHcCCCCCcch-------hhhh
Q 043204 203 NEATHLLYSMFWRISQKGSGEDIV-IYRTLLFALCD--------QGKIQDAMQILEKILRKGLKAPKSR-------RHRI 266 (504)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~ 266 (504)
+.+...+... ....+... ....+...+.. .|++++|..+++++.+.. |.+.. ....
T Consensus 177 ~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 177 HLEVSSVNTS------SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY 248 (537)
T ss_dssp HHHHHTSCCC------CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc------cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH
Confidence 6665554322 12222222 33333333322 247899999999998764 33322 3444
Q ss_pred hccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCC
Q 043204 267 DLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGM 346 (504)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (504)
+...+...|+++.|...++.+..... +...+..+...+...|++++|...++++.+.... +..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCC
Confidence 56677889999999999999998754 4777888888888889999999999999987543 67889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHH
Q 043204 347 VDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVL 426 (504)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (504)
+++|...+++++... +.+...+..+..+|...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+
T Consensus 326 ~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999966654 334568888999999999999999999999876 2345668889999999999999999999
Q ss_pred HHHHhcCc-----CCCcchHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchh
Q 043204 427 EEMLIRSY-----WPCVETYNVLIRGLCSI----------GKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLN 491 (504)
Q Consensus 427 ~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 491 (504)
+++.+..- ......+......+... |++++|...++++.+.. +.+...+..+...+...|+ ++
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~-~~ 479 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEK-ID 479 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-HH
Confidence 99887531 01112234445677777 99999999999999753 3345777788888777776 99
Q ss_pred HHHHHHHHhhc
Q 043204 492 VCRKTLEQLSS 502 (504)
Q Consensus 492 ~a~~~~~~~~~ 502 (504)
+|.+.+++..+
T Consensus 480 ~A~~~~~~al~ 490 (537)
T 3fp2_A 480 EAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=9.7e-20 Score=165.80 Aligned_cols=341 Identities=13% Similarity=0.019 Sum_probs=203.1
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..+..+...+...|++++|+..|+++.+..|. +..++..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566778888899999999999999988776 77888888899999999999999999988775 556778888889
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCV--NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 166 (504)
.+...|++++|...|+...+.... .+...+..+...+ . ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~-----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E-----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H-----------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H-----------------HHHHHHHHHHHHHccC
Confidence 999999999999999988876531 1233333331110 0 0112233445556666
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHH
Q 043204 167 SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++ .... +.+..++..+...+...|++++|..
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAA----SKLK-SDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTC-SCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHH----HHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665543 224455556666666666666666666655 3322 2245566666666666666666666
Q ss_pred HHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043204 247 ILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (504)
.+++..+.. |............ ........+...+...|++++|...++++.+..
T Consensus 210 ~~~~a~~~~--~~~~~~~~~~~~~-----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 210 EVRECLKLD--QDHKRCFAHYKQV-----------------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC--ccchHHHHHHHHH-----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666666542 2222222111000 011222233444555566666666666665543
Q ss_pred CCcch----hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc
Q 043204 327 FWPSL----VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN 402 (504)
Q Consensus 327 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 402 (504)
.. +. ..+..+...+...|++++|...+++++... +.+..++..+..+|...|++++|.+.|++..+. .|+
T Consensus 265 ~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~p~ 338 (359)
T 3ieg_A 265 PS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH---NEN 338 (359)
T ss_dssp CS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTT
T ss_pred CC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC
Confidence 22 11 123345556666666666666666644432 234556666666666666666666666666642 333
Q ss_pred -hhhHHHHHHHHh
Q 043204 403 -GETYGILVDGLC 414 (504)
Q Consensus 403 -~~~~~~l~~~~~ 414 (504)
...+..+..+..
T Consensus 339 ~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 339 DQQIREGLEKAQR 351 (359)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 334444444443
No 14
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=8e-19 Score=168.21 Aligned_cols=421 Identities=9% Similarity=0.016 Sum_probs=212.7
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.|..++. +.+.|++++|..+|+++.+..|. +...|..++..+.+.|++++|..+|+++.... |+...|...+..
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 4445555 34556666666666666666555 55566666666666666666666666666553 355555555432
Q ss_pred H-HhcCChhHHHH----HHHHhhh-CCCC-ccHHHHHHHHHHHHh---------cchHHHHHHHHHHhhcCCCCcchHHH
Q 043204 90 Y-ARAGQLNEAVS----LFKNLSQ-FNCV-NWTQSFNTLLKEMVK---------ESKLEAAHILFLRSCYGWEVKSRIQS 153 (504)
Q Consensus 90 ~-~~~~~~~~a~~----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (504)
. ...|+.+.|.+ +|+...+ .|.. ++...|...+....+ .|+++.|..+|++.... +..+....
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHH
Confidence 2 23455555443 4444332 1222 223444444444433 45555555555555542 11111112
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHH--hhCC---CCcC----
Q 043204 154 LNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRI--SQKG---SGED---- 224 (504)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~---- 224 (504)
|..........|. .+...++. ...++++.|..++....... .+.. +.|+
T Consensus 168 ~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2111110000000 00000110 12345566666655431100 1111 2332
Q ss_pred ----HHHHHHHHHHHHhc----Cch----hHHHHHHHHHHHcCCCCCcchhhhhhccccCC-------CCChH-------
Q 043204 225 ----IVIYRTLLFALCDQ----GKI----QDAMQILEKILRKGLKAPKSRRHRIDLCPCND-------GEDIE------- 278 (504)
Q Consensus 225 ----~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~------- 278 (504)
...|...+...... ++. ..+..+|++.+.. .|.....+...+..+.. .|+++
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23444443322221 122 3556677776664 23444444443444332 56655
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc-hhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 043204 279 GAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPS-LVMYEAKLAALFKDGMVDEALEVIEEE 357 (504)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (504)
.|..++++.++.-...+...|..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|.++|+++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666664211124566666666666677777777777777764321 2 236666666666777777777777775
Q ss_pred HhcCCCCccHHHHHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC-cC
Q 043204 358 MVKGTFVPTVRVYNILLKG-LCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRS-YW 435 (504)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 435 (504)
+.... .+...|...... +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..
T Consensus 383 l~~~~--~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 383 REDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HTCTT--CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HhccC--CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 54322 122222222111 234677777777777766541 2245666777777777777777777777776653 11
Q ss_pred CC--cchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 436 PC--VETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 436 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
|+ ...|...+......|+.+.+..+.+++.+
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 22566666666667777777777777664
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=5.9e-19 Score=160.60 Aligned_cols=347 Identities=11% Similarity=0.014 Sum_probs=243.9
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
++..+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|+.+.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 44556667777777777777777777777665 55566777777777777777777777777766542 23456666667
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCc-chHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVK-SRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRL 202 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 202 (504)
.+...|++++|...|++.....+.. .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777665431100 12222222221110 11233446778899999
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHH
Q 043204 203 NEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKS 282 (504)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 282 (504)
++|...++++ .+.. +.+...+..+..++...|++++|...++++.+. .|........+...+...|+++.|..
T Consensus 137 ~~A~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 137 TAAITFLDKI----LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHHHHHHHHH----HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHH----HHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998 4433 336788999999999999999999999999876 46677777778888899999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 043204 283 LINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT 362 (504)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (504)
.++...+.... +...+. .+..+. .......+...+.+.|++++|...+++++....
T Consensus 210 ~~~~a~~~~~~-~~~~~~-----------------~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 210 EVRECLKLDQD-HKRCFA-----------------HYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHHHHHHHCTT-CHHHHH-----------------HHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhCcc-chHHHH-----------------HHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999876433 222111 111111 122334456778899999999999999666553
Q ss_pred CCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCC-cc
Q 043204 363 FVPTV--RVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPC-VE 439 (504)
Q Consensus 363 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 439 (504)
..+.. ..+..+..++...|++++|...+++..+. .+.+..++..+..+|...|++++|.+.|+++.+.. |+ ..
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~ 341 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQ 341 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHH
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChH
Confidence 22222 23556778999999999999999999875 23367889999999999999999999999999864 54 45
Q ss_pred hHHHHHHHHHc
Q 043204 440 TYNVLIRGLCS 450 (504)
Q Consensus 440 ~~~~l~~~~~~ 450 (504)
.+..+..+...
T Consensus 342 ~~~~l~~~~~~ 352 (359)
T 3ieg_A 342 IREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666655543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=6.3e-18 Score=160.31 Aligned_cols=366 Identities=11% Similarity=-0.009 Sum_probs=247.8
Q ss_pred hHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCCh
Q 043204 25 LTALKIFKEAKEKYPNYRHNGPVYASMIGILSE----SNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR----AGQL 96 (504)
Q Consensus 25 ~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 96 (504)
..++..++...+. + +..++..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++
T Consensus 24 ~~~~~~~~~~a~~--g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 24 NVNLEQLKQKAES--G---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp -CCHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred hHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 3456667666665 4 78888888888887 889999999999988765 56677788888888 8899
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh----cCCHH
Q 043204 97 NEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK----ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ----CRRSD 168 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 168 (504)
++|.+.|+...+.+ +...+..|...|.. .+++++|...|++..... +...+..|...|.. .++.+
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999988765 34566777788887 788999999999887652 34566777777776 78899
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCc
Q 043204 169 LALHVFQEMDFQGCYPDRESYHILMKGLCN----DRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD----QGK 240 (504)
Q Consensus 169 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 240 (504)
+|.+.|++..+.| +...+..+...|.. .+++++|..+|++. .+.+ +...+..+...|.. .++
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a----~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS----ATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH----HHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH----HHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 9999999888764 67778888888877 78899999998887 4543 45677777777775 677
Q ss_pred hhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHH
Q 043204 241 IQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYN----EGRIVEGD 316 (504)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 316 (504)
+++|.++|++..+.+ +...+..+...+.. .++.++|.
T Consensus 239 ~~~A~~~~~~a~~~~---------------------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---------------------------------------NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHHHTTT---------------------------------------CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 888888888776643 22233333334444 45666666
Q ss_pred HHHHHHHHCCCCcchhhHHHHHHHHhcC-----CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC---ChHHHHH
Q 043204 317 KVLDEMRTKGFWPSLVMYEAKLAALFKD-----GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG---NSAVAVM 388 (504)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 388 (504)
..|++..+.| +...+..+...|... +++++|...|+++... + +...+..+...|...| ++++|.+
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 6666665543 334455555555554 6666666666663332 2 3334455555555544 5566666
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhh----cCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc----cCCHHHHHHH
Q 043204 389 YLKKMSKQVGCVANGETYGILVDGLCR----DGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS----IGKQYEAVMW 460 (504)
Q Consensus 389 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 460 (504)
+|++..+. .+...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.
T Consensus 353 ~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 353 WFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 66666553 244555566666665 566666666666666654 34555556666655 5666666666
Q ss_pred HHHHHHcC
Q 043204 461 LEEMISQA 468 (504)
Q Consensus 461 ~~~~~~~~ 468 (504)
|++..+.+
T Consensus 426 ~~~A~~~~ 433 (490)
T 2xm6_A 426 FDTASTND 433 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 66666554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.1e-19 Score=159.00 Aligned_cols=195 Identities=12% Similarity=0.029 Sum_probs=95.3
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+...|++++|+++|+++.+..|. +...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 3444445555555555555555555555443 44444445555555555555555555555543 3344455555555
Q ss_pred HHhcC-ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHH
Q 043204 90 YARAG-QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSD 168 (504)
Q Consensus 90 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (504)
+...| ++++|.+.|+...+.+. .+...+..+...+...|++++|...|++.....+. +...+..+...|...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG--CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--CSHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhHH
Confidence 55555 55555555555554432 22344445555555555555555555554432111 1223333444455555555
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 169 LALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 169 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
+|.+.|++..+.. +.+...+..+...+...|++++|...++++
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5555555544432 123344444444455555555555555444
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.8e-17 Score=157.23 Aligned_cols=350 Identities=12% Similarity=0.051 Sum_probs=276.6
Q ss_pred CCchHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCccH
Q 043204 9 LTPTYLSQIIKK----QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSE----SNRITEMKEVIDQMKGDSCECKD 80 (504)
Q Consensus 9 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (504)
.++..+...|.. .+++++|+..|++..+. + +..++..|...|.. .+++++|.++|++..+.| ++
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 344556677777 88999999999999987 5 78888899999988 899999999999998865 56
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cchHHHHHHHHHHhhcCCCCcchHH
Q 043204 81 SVFATAIRTYAR----AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK----ESKLEAAHILFLRSCYGWEVKSRIQ 152 (504)
Q Consensus 81 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
..+..+...|.. .+++++|.+.|+...+.+ +...+..|...|.. .++.++|...|++..... +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 677778888888 789999999999998876 35667788888887 789999999999987652 456
Q ss_pred HHHHHHHHHhh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhhCCCCcC
Q 043204 153 SLNLLMDVLCQ----CRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN----DRRLNEATHLLYSMFWRISQKGSGED 224 (504)
Q Consensus 153 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (504)
.+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++. .+.+ +
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a----~~~~---~ 254 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS----AEQG---N 254 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH----HTTT---C
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH----HHCC---C
Confidence 77888888887 899999999999998864 66778888888876 88999999999988 5543 4
Q ss_pred HHHHHHHHHHHHh----cCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHH
Q 043204 225 IVIYRTLLFALCD----QGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYS 300 (504)
Q Consensus 225 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (504)
...+..+...|.. .++.++|.++|++..+.+ +...+.
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---------------------------------------~~~a~~ 295 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---------------------------------------NSDGQY 295 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------------------CHHHHH
Confidence 5666677777776 778888888888776542 233444
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCCCccHHHHHH
Q 043204 301 AMAIDLYNE-----GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDG---MVDEALEVIEEEMVKGTFVPTVRVYNI 372 (504)
Q Consensus 301 ~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~ 372 (504)
.+...+... ++.++|...|++..+.| +...+..+...|...| +.++|.+.|+++... .+...+..
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~ 368 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFN 368 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHH
Confidence 455555555 78888888888888875 4556677777776655 788888888885543 25667777
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh----cCcHHHHHHHHHHHHhcC
Q 043204 373 LLKGLCD----AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCR----DGRFLEASRVLEEMLIRS 433 (504)
Q Consensus 373 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 433 (504)
+...|.. .+++++|.+.|++..+. + +...+..|...|.. .++.++|.+.|++..+.+
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 7777877 78899999999888775 3 46677778888887 788999999999888875
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=7.7e-18 Score=161.36 Aligned_cols=387 Identities=12% Similarity=0.039 Sum_probs=231.1
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHH-hccCChhHHHH----HHHHhhc-CCCC-ccHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGIL-SESNRITEMKE----VIDQMKG-DSCE-CKDS 81 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~-~~~~ 81 (504)
..|..++..+.+.|++++|..+|+++.+..| +...|...+... ...|+.+.|.+ +|+.... .|.. ++..
T Consensus 47 ~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p----~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~ 122 (530)
T 2ooe_A 47 RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL----HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC----CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH
Confidence 3577888999999999999999999998754 666787777533 35677777765 7776654 2433 3556
Q ss_pred HHHHHHHHHHh---------cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHH
Q 043204 82 VFATAIRTYAR---------AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQ 152 (504)
Q Consensus 82 ~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
.|...+....+ .|+++.|..+|++..+....+....|..........+. ..+
T Consensus 123 ~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~------------------ 183 (530)
T 2ooe_A 123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLA------------------ 183 (530)
T ss_dssp HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHH------------------
T ss_pred HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHH------------------
Confidence 78888877655 68999999999999883212222333333221111110 000
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHh------hhCC---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHH
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEM------DFQG---CYPD--------RESYHILMKGLCND----RRL----NEATH 207 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~p~--------~~~~~~l~~~~~~~----~~~----~~a~~ 207 (504)
..++. .+.+++..|..++..+ .+.. ++|+ ...|...+...... ++. +.+..
T Consensus 184 --~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 184 --KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp --HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred --HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 00000 0122333333333321 1110 1222 11222222211110 111 24444
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-------cCchh-------HHHHHHHHHHHcCCCCCcchhhhhhccccCC
Q 043204 208 LLYSMFWRISQKGSGEDIVIYRTLLFALCD-------QGKIQ-------DAMQILEKILRKGLKAPKSRRHRIDLCPCND 273 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (504)
+|++.. .. .+.+...|..++..+.+ .|+++ +|..+|++..+. ..|.....+...+.++..
T Consensus 260 ~y~~al----~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 260 AYEQCL----LV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHH----HH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHH
T ss_pred HHHHHH----Hh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 555542 21 11234455555554443 45544 555555555431 133444444444455555
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHH-HhcCCCHHHHH
Q 043204 274 GEDIEGAKSLINEALIRGGIPS-LASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAA-LFKDGMVDEAL 351 (504)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 351 (504)
.|+++.|..+|+++++.... + ...|...+..+.+.|++++|..+|++..+.... +...+...... +...|+.++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 56666666666666554221 2 247777888888889999999999999886322 23333322222 34689999999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHhhcCcHHHHHHHHHHH
Q 043204 352 EVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN--GETYGILVDGLCRDGRFLEASRVLEEM 429 (504)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 429 (504)
.+|+.++... +.+...|..++..+.+.|+.++|..+|++........|+ ...|...+......|+.+.+..+.+++
T Consensus 412 ~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999877764 345778889999999999999999999999876333343 347888888888899999999999998
Q ss_pred Hhc
Q 043204 430 LIR 432 (504)
Q Consensus 430 ~~~ 432 (504)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.7e-18 Score=152.71 Aligned_cols=292 Identities=10% Similarity=-0.081 Sum_probs=214.7
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHH
Q 043204 150 RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYR 229 (504)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 229 (504)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++ .... +.+...+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~~ 94 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKL----VDLY-PSNPVSWF 94 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHH----HHHC-TTSTHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHH----HHhC-cCCHHHHH
Confidence 34455667777777888888888888877654 234556666777778888888888888877 3332 22456777
Q ss_pred HHHHHHHhcC-chhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 043204 230 TLLFALCDQG-KIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYN 308 (504)
Q Consensus 230 ~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 308 (504)
.+...+...| ++++|.+.|+++.+... .+...+..+...+..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~-------------------------------------~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEK-------------------------------------TYGPAWIAYGHSFAV 137 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCT-------------------------------------TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCC-------------------------------------ccHHHHHHHHHHHHH
Confidence 7778888888 78888888888776432 145567777777888
Q ss_pred cCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 043204 309 EGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVM 388 (504)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 388 (504)
.|++++|...++++.+.... +...+..+...|...|++++|...+++++... +.+...+..+...+...|++++|..
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHH
Confidence 88888888888888876433 45666778888888899999998888855443 4456778888888889999999999
Q ss_pred HHHHHHHhcC-------CCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHH
Q 043204 389 YLKKMSKQVG-------CVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWL 461 (504)
Q Consensus 389 ~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 461 (504)
.++++.+... .+....++..+..+|...|++++|...+++..+.. +.+...|..+...+...|++++|.+.+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 9888876421 13335678888899999999999999999988864 346778888889999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhcCCCch
Q 043204 462 EEMISQAKLPD-ISVWSSLVASVCCNTADL 490 (504)
Q Consensus 462 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~ 490 (504)
+++.+ +.|+ ...+..+..++....++.
T Consensus 294 ~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 294 HTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 99884 4454 456666666654555533
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.1e-18 Score=159.47 Aligned_cols=316 Identities=12% Similarity=-0.033 Sum_probs=197.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHH-HHHHhhcCCCC-c--cHHHHHHHHHHHHhcCC
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKE-VIDQMKGDSCE-C--KDSVFATAIRTYARAGQ 95 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~ 95 (504)
..+.++.+...|+.+.+..| + ++...|++++|.+ .+++....... | +...+..+...+.+.|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDA----E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD 79 (368)
T ss_dssp ----------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHcCCc----h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC
Confidence 34455666666666655422 1 1223366777777 77765544311 1 23456677777777777
Q ss_pred hhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043204 96 LNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQ 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (504)
+++|...|+.+.+.. +.+..++..+...+...|++++|...|+++.... +.+..++..+..+|...|++++|.+.|+
T Consensus 80 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 80 LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777655 3345667777777777777777777777776542 2245567777777777788888888777
Q ss_pred HhhhCCCCCCHhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcC
Q 043204 176 EMDFQGCYPDRESYHI---------------LMKGLCNDRRLNEATHLLYSMFWRISQKGSG-EDIVIYRTLLFALCDQG 239 (504)
Q Consensus 176 ~~~~~~~~p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 239 (504)
++...... +...+.. .+..+...|++++|...++++. ..... ++..++..+..+|...|
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 157 DWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV----RLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH----HHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH----HhCcCcccHHHHHHHHHHHHHcC
Confidence 77765322 2222211 2333448889999999998883 33222 25788888899999999
Q ss_pred chhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 043204 240 KIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVL 319 (504)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (504)
++++|...++++.+... .+...+..+...+...|++++|...|
T Consensus 232 ~~~~A~~~~~~al~~~~-------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRP-------------------------------------NDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999887632 14567777778888888888888888
Q ss_pred HHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC---------ccHHHHHHHHHHHHhcCChHHHHHHH
Q 043204 320 DEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFV---------PTVRVYNILLKGLCDAGNSAVAVMYL 390 (504)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~ 390 (504)
+++.+..+ .+...+..+..+|.+.|++++|...|++++....-. ....+|..+..+|...|++++|..++
T Consensus 275 ~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 88877643 367788888888888888888888888755432111 11578888888999999999988887
Q ss_pred HHHH
Q 043204 391 KKMS 394 (504)
Q Consensus 391 ~~~~ 394 (504)
.+..
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 7543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.9e-18 Score=157.84 Aligned_cols=295 Identities=10% Similarity=-0.055 Sum_probs=172.0
Q ss_pred HHhcCChhHHHH-HHHHHHhcCCCCCc-chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC
Q 043204 18 IKKQKSPLTALK-IFKEAKEKYPNYRH-NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ 95 (504)
Q Consensus 18 ~~~~~~~~~A~~-~~~~~~~~~p~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (504)
+...|++++|+. .|++..+..|.... +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344566666666 66666655443111 24456666666666777777777777666655 4555666666666677777
Q ss_pred hhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHH-------------HHHHHHh
Q 043204 96 LNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLN-------------LLMDVLC 162 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~ 162 (504)
+++|...|+.+.+.+ +.+..++..+...+...|++++|...++++....+..+...... ..+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 777777777666554 23455666666666677777777777766654432222111100 0122223
Q ss_pred hcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch
Q 043204 163 QCRRSDLALHVFQEMDFQGCYP-DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
..|++++|...|+++.+..... +..++..+...+...|++++|...++++ .... +.+..++..+..++...|++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA----LSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 6667777777777666543111 3566666666677777777777777666 2221 22455666666777777777
Q ss_pred hHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCC
Q 043204 242 QDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIP----------SLASYSAMAIDLYNEGR 311 (504)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~ll~~~~~~~~ 311 (504)
++|...|+++.+. .|.....+..+..++...|+++.|...++.+....... ....|..+..++...|+
T Consensus 268 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 268 EEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 7777777776664 34455555555666666677777777776666442221 25678888888888888
Q ss_pred hhHHHHHHHH
Q 043204 312 IVEGDKVLDE 321 (504)
Q Consensus 312 ~~~a~~~~~~ 321 (504)
.++|..++++
T Consensus 346 ~~~A~~~~~~ 355 (368)
T 1fch_A 346 SDAYGAADAR 355 (368)
T ss_dssp GGGHHHHHTT
T ss_pred hHhHHHhHHH
Confidence 8888887763
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.1e-18 Score=159.21 Aligned_cols=280 Identities=13% Similarity=-0.019 Sum_probs=207.6
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+...+..+...+.+.|++++|+..|+++.+..|. +..+|..+..++...|++++|.+.|+++.+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4556788888999999999999999999998776 78889999999999999999999999998876 6667889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCc---------cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVN---------WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLL 157 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 157 (504)
..+|...|++++|...|+++.+..... ....+..+...+...|++++|...|+++....+..++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999887654211 12223445778888999999999999988764433356788889
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 043204 158 MDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD 237 (504)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (504)
...|...|++++|.+.|++..+.. +.+..+|..+..++...|++++|...|+++ .... +.+..++..+..+|..
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA----LEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhcC-CCchHHHHHHHHHHHH
Confidence 999999999999999999988764 336788889999999999999999999988 3332 2257788889999999
Q ss_pred cCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043204 238 QGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDK 317 (504)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 317 (504)
.|++++|...|+++.+........... .....+...|..+..++...|+.+.+..
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQV-------------------------PHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC-------------------------------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCccc-------------------------chhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999887753210000000 0000135667777777777788877766
Q ss_pred HHHH
Q 043204 318 VLDE 321 (504)
Q Consensus 318 ~~~~ 321 (504)
+..+
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6543
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.1e-16 Score=155.97 Aligned_cols=379 Identities=13% Similarity=0.097 Sum_probs=282.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYA 91 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
...+++|...|.+.+|+++++++.-....+.-+...-+.++....+. +..+..+..++..... ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 45678899999999999999999954222333455666677777666 5677777766665221 333778888
Q ss_pred hcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHH
Q 043204 92 RAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLAL 171 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 171 (504)
..|.+++|..+|++.. .+ ....+.++ -..+++++|.++.++.. +..+|..+..++...|++++|.
T Consensus 1061 ~lglyEEAf~IYkKa~----~~-~~A~~VLi---e~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD----VN-TSAVQVLI---EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcC----CH-HHHHHHHH---HHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999863 11 22222332 27789999999998763 3568899999999999999999
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 043204 172 HVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKI 251 (504)
Q Consensus 172 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 251 (504)
+.|.+. -|...|..++.++.+.|++++|.+.|... ++.. ++....+.++.+|++.++++....+.
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA----rk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA----RKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH----Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 999764 37788999999999999999999999877 4433 23333345899999999888544442
Q ss_pred HHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcch
Q 043204 252 LRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSL 331 (504)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (504)
+ .+... .+..++..|...|+++.|..+|..+ ..|..+...+.+.|+++.|.+.+++.. +.
T Consensus 1191 -~---~~n~a-d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 -N---GPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred -h---CCCHH-HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 2 12333 3334788999999999999999885 489999999999999999999998772 67
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 043204 332 VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVD 411 (504)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 411 (504)
.+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..... . +-....|+-|..
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-e-raH~gmftELai 1322 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGL-E-RAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-hhHhHHHHHHHH
Confidence 8999999999999999999876653 2345667778999999999999999999887643 1 223345656666
Q ss_pred HHhh--cCcHHHHHHHHHHHHhcCcCC------CcchHHHHHHHHHccCCHHHHH
Q 043204 412 GLCR--DGRFLEASRVLEEMLIRSYWP------CVETYNVLIRGLCSIGKQYEAV 458 (504)
Q Consensus 412 ~~~~--~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~ 458 (504)
+|++ -++..++.+.|..-. +++| +...|..++-.|.+.|+++.|.
T Consensus 1323 LyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 6655 345555555555322 2222 4677999999999999999998
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2.5e-18 Score=153.06 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=66.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChh
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLN 97 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (504)
+-+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|+++
T Consensus 13 l~~~~~ld~A~~fae~~~--------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHH
Confidence 346788999999999982 3349999999999999999999999653 57779999999999999999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEM 177 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (504)
+|++.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999988877764 3446778999999999999999988774 256679999999999999999999999977
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHH
Q 043204 178 DFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQIL 248 (504)
Q Consensus 178 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (504)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|....
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA----------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH----------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc----------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 36999999999999999999999876 16889999999999999999995443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=7.3e-18 Score=153.73 Aligned_cols=277 Identities=10% Similarity=-0.046 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHH
Q 043204 150 RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYR 229 (504)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 229 (504)
+...+..+...+.+.|++++|.++|+++.+.. +.+..++..+...+...|++++|...|+++ .... +.+..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~~-p~~~~~~~ 137 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRC----LELQ-PNNLKALM 137 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHC-TTCHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----HhcC-CCCHHHHH
Confidence 34557778888889999999999999888764 336788888899999999999999999888 3432 23577888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
.+..+|...|++++|...++++.+.. |........+. .....+..+...+...
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CC
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhh
Confidence 89999999999999999999988753 11111111100 0122334445566666
Q ss_pred CChhHHHHHHHHHHHCCCC-cchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 043204 310 GRIVEGDKVLDEMRTKGFW-PSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVM 388 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 388 (504)
|++++|...++++.+.... ++..++..+...|...|++++|...|++++... +.+..+|..+..+|...|++++|..
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777665422 145666777777777777777777777755543 3355677777777777777777777
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCc---C--------CCcchHHHHHHHHHccCCHHHH
Q 043204 389 YLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSY---W--------PCVETYNVLIRGLCSIGKQYEA 457 (504)
Q Consensus 389 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--------~~~~~~~~l~~~~~~~g~~~~a 457 (504)
.|+++.+. .+.+..++..+..+|.+.|++++|...|+++.+..- . .+...|..+..++...|+.+.+
T Consensus 269 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 269 AYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 77777654 122356677777777777777777777777765420 0 1256677777777777777777
Q ss_pred HHHHHH
Q 043204 458 VMWLEE 463 (504)
Q Consensus 458 ~~~~~~ 463 (504)
.++.++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 766654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.7e-17 Score=147.73 Aligned_cols=268 Identities=12% Similarity=0.080 Sum_probs=127.8
Q ss_pred CCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHH
Q 043204 5 WPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFA 84 (504)
Q Consensus 5 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
.|.+.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+
T Consensus 29 ~~~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~ 98 (449)
T 1b89_A 29 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHH
Confidence 355679999999999999999999999653 27779999999999999999999988877774 46678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 164 (504)
.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~L 161 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHL 161 (449)
T ss_dssp ----------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHh
Confidence 99999999999999998874 256679999999999999999999999977 2689999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHH
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDA 244 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 244 (504)
|++++|.+.++++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---------L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH---------IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---------TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---------HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 9999999999998 2789999999999999999999554432 223444456789999999999999
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CChhHHHHHHHHH
Q 043204 245 MQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE--GRIVEGDKVLDEM 322 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~ 322 (504)
..+++..+... + .....|+.+...|++- +++.+.++.|..-
T Consensus 227 i~lLe~aL~le--~-----------------------------------ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 227 ITMLEAALGLE--R-----------------------------------AHMGMFTELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHHHHHTTST--T-----------------------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCc--H-----------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999987543 1 1334444444444443 4444444444311
Q ss_pred HHCCCCc------chhhHHHHHHHHhcCCCHHHHHHH
Q 043204 323 RTKGFWP------SLVMYEAKLAALFKDGMVDEALEV 353 (504)
Q Consensus 323 ~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 353 (504)
.+++| +...|..++-.|...++++.|...
T Consensus 270 --ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 270 --VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp --SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred --hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 12222 456788888888999999988764
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3.1e-17 Score=147.10 Aligned_cols=278 Identities=10% Similarity=-0.038 Sum_probs=209.7
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+...+-.+...+...|++++|+.+|+++.+..|+ +..++..+..++...|++++|.+.++++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 4566677888999999999999999999999876 88889999999999999999999999999876 6677889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHH--------------HH-HHHhcchHHHHHHHHHHhhcCCCCcchH
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTL--------------LK-EMVKESKLEAAHILFLRSCYGWEVKSRI 151 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (504)
...+...|++++|.+.|+.+.+..... ...+..+ .. .+...|++++|...++++.... +.+.
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 172 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQY-EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDA 172 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTT-TTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCH
Confidence 999999999999999999988765332 2222222 22 3677788999999998887653 2256
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 043204 152 QSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTL 231 (504)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (504)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++ .... +.+..++..+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----~~~~-~~~~~~~~~l 246 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA----LDIN-PGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcC-CCCHHHHHHH
Confidence 677888888889999999999998887764 235677888888888999999999998887 3332 2357788888
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 043204 232 LFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGR 311 (504)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (504)
..+|...|++++|.+.++++.+............ ....+...+..+...+...|+
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA-------------------------SREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC------------------------------CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccc-------------------------hhhcCHHHHHHHHHHHHhcCC
Confidence 8889999999999999988876532110000000 000135567777777888888
Q ss_pred hhHHHHHHHHH
Q 043204 312 IVEGDKVLDEM 322 (504)
Q Consensus 312 ~~~a~~~~~~~ 322 (504)
.++|..++++.
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 88888777643
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=1.1e-16 Score=143.45 Aligned_cols=281 Identities=9% Similarity=-0.031 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHH
Q 043204 150 RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYR 229 (504)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 229 (504)
+...+..+...+...|++++|..+|+++.+... .+...+..+..++...|++++|...++++ .... +.+..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----~~~~-~~~~~~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHA----RMLD-PKDIAVHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhcC-cCCHHHHH
Confidence 344556677788888888888888888877542 36677888888888889999999988888 3332 23577888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--HH
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAID--LY 307 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~ 307 (504)
.+..++...|++++|.+.++++.+... ........+... .|+......+... +.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC------------------------------------------CCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHH
Confidence 888888899999999999988887532 222222111000 0111111111122 44
Q ss_pred hcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHH
Q 043204 308 NEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAV 387 (504)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 387 (504)
..|++++|...++++.+.... +...+..+...|...|++++|...+++++... +.+..++..+...+...|++++|.
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 456677777777777665432 56667777777777777777777777754443 334566777777777777777777
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCC-----------CcchHHHHHHHHHccCCHHH
Q 043204 388 MYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWP-----------CVETYNVLIRGLCSIGKQYE 456 (504)
Q Consensus 388 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~ 456 (504)
..++++.+. .+.+...+..+..+|...|++++|.+.++++.+..-.. +...|..+..++.+.|++++
T Consensus 227 ~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 227 DAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 777777654 22345667777777777777777777777776642110 35567777777777888887
Q ss_pred HHHHHHHHH
Q 043204 457 AVMWLEEMI 465 (504)
Q Consensus 457 a~~~~~~~~ 465 (504)
|.+++++..
T Consensus 305 A~~~~~~~l 313 (327)
T 3cv0_A 305 VELTYAQNV 313 (327)
T ss_dssp HHHHTTCCS
T ss_pred HHHHHHHHH
Confidence 777776543
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1e-15 Score=144.79 Aligned_cols=393 Identities=11% Similarity=-0.027 Sum_probs=239.6
Q ss_pred cchhcHHHHHHHHhccCChhHHHHHHHHhhcC--------CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-----
Q 043204 43 HNGPVYASMIGILSESNRITEMKEVIDQMKGD--------SCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF----- 109 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 109 (504)
.....|+.|..++...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999886542 11234467899999999999999999999876532
Q ss_pred C--CCccHHHHHHHHHHHHhc--chHHHHHHHHHHhhcCCCCcchHHHHHHHHHH---HhhcCCHHHHHHHHHHhhhCCC
Q 043204 110 N--CVNWTQSFNTLLKEMVKE--SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV---LCQCRRSDLALHVFQEMDFQGC 182 (504)
Q Consensus 110 ~--~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 182 (504)
+ ......++..+..++... +++++|...|++.....+-.| ..+..+..+ +...++.++|++.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~--~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP--EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 112245666665555554 579999999999876533333 333444333 445678888999998887753
Q ss_pred CCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCC
Q 043204 183 YPDRESYHILMKGLCN----DRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKA 258 (504)
Q Consensus 183 ~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 258 (504)
+.+..++..+...+.. .+++++|.+.+++. .... +.+..++..+...|...|++++|...+++..+.. |
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a----l~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p 278 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA----LEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--P 278 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHH----HHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--C
Confidence 2245556555554443 46778899999887 3432 3367788889999999999999999999998863 3
Q ss_pred CcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHH
Q 043204 259 PKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKL 338 (504)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (504)
.+...+..+...+... ....... ............+..+.|...+++..+.... +...+..+.
T Consensus 279 ~~~~~~~~lg~~y~~~---------~~~~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg 341 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAK---------VFQVMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILA 341 (472)
T ss_dssp TCHHHHHHHHHHHHHH---------HHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHH
T ss_pred ChHHHHHHHHHHHHHH---------HHHhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHH
Confidence 4333332222111000 0000000 0000000111123467788888888876533 667888899
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCccH--HHHHHHHH-HHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh
Q 043204 339 AALFKDGMVDEALEVIEEEMVKGTFVPTV--RVYNILLK-GLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCR 415 (504)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 415 (504)
..|...|++++|...|++++.... .+.. ..+..+.. .....|+.++|+..|.+..+. .|+.....
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~-------- 409 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKEL-TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKE-------- 409 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHH--------
T ss_pred HHHHHhccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHH--------
Confidence 999999999999999998665432 2221 12223322 245789999999999998754 55543222
Q ss_pred cCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 043204 416 DGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQA-KLPDISVW 476 (504)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~ 476 (504)
+....+.++++...+.+ +.+..+|..+..+|...|++++|++.|++.++.+ ..|+..+|
T Consensus 410 -~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 410 -KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred -HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 22344556666666653 4568899999999999999999999999999754 23444443
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.2e-16 Score=139.69 Aligned_cols=131 Identities=19% Similarity=0.081 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhH---HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHH
Q 043204 295 SLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMY---EAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYN 371 (504)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (504)
+...+..+...+.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|++++... +.+...++
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~ 204 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLN 204 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 33444444455555555555555555555442 221100 112222223345555555555433332 23444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHH-HHHHHHHHHh
Q 043204 372 ILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLE-ASRVLEEMLI 431 (504)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 431 (504)
.+..++.+.|++++|...+++..+. .+-+..++..++..+...|+.++ +.++++++.+
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4545555555555555555554433 11233344444444444454433 3344444444
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=8.9e-16 Score=134.08 Aligned_cols=256 Identities=12% Similarity=0.090 Sum_probs=177.6
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCH
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRS 167 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 167 (504)
+-....|++..|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcH
Confidence 44455677777777777665544333233445567777778888777765543 1345677778888888888888
Q ss_pred HHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHH
Q 043204 168 DLALHVFQEMDFQGCYPD-RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 168 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
++|++.++++...+..|+ ...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888877654454 45556666788888888888887652 3467788888888888888888888
Q ss_pred HHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043204 247 ILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (504)
.|+++.+.. |+... ......++..+...|++++|..+|+++.+..
T Consensus 152 ~l~~~~~~~--p~~~~---------------------------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 152 ELKKMQDQD--EDATL---------------------------------TQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp HHHHHHHHC--TTCHH---------------------------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhC--cCcHH---------------------------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 888887763 11100 0011112223334578888888888888763
Q ss_pred CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHHh
Q 043204 327 FWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAV-AVMYLKKMSKQ 396 (504)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 396 (504)
+.+...++.+..++.+.|++++|...|++++... +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 197 -p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 197 -SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3477788888888888888888888888866665 3456677778888888888865 56788887754
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=4.5e-14 Score=140.86 Aligned_cols=383 Identities=13% Similarity=0.125 Sum_probs=284.2
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCC--CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSC--ECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTL 121 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
++.--...+.+|...|.+.+|++++++..-.+- ..+...-+.++.+.++. +..+..+..+...... ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHH
Confidence 334446677888899999999999999884421 13445666677777776 5666666666654222 2347
Q ss_pred HHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043204 122 LKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR 201 (504)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 201 (504)
...+...|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 7888899999999999998731 112223333 26789999999998763 57889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHH
Q 043204 202 LNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAK 281 (504)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 281 (504)
+++|...|.+. .|...|..++.++.+.|++++|.+++....+.... .....-++..+++.++++...
T Consensus 1121 ~kEAIdsYiKA----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e---~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1121 VKEAIDSYIKA----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE---SYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHHHHHHHhc----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc---ccccHHHHHHHHhhcCHHHHH
Confidence 99999998643 36788889999999999999999999988775422 112223566777778887544
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 043204 282 SLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKG 361 (504)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (504)
.++ . .++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.++++
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 442 2 246677778888999999999999999875 37899999999999999999999872
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchH
Q 043204 362 TFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETY 441 (504)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (504)
.+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++...... +-....|
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmf 1317 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 1317 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHH
Confidence 46689999999999999999998866543 2355677799999999999999999998887654 3345566
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhcCCCchhHHHH
Q 043204 442 NVLIRGLCSI--GKQYEAVMWLEEMISQAKLP------DISVWSSLVASVCCNTADLNVCRK 495 (504)
Q Consensus 442 ~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~ll~~~~~~~~~~~~a~~ 495 (504)
.-+...|++. ++..++.++|..-. ++.| +...|..++-.|++.+. ++.|..
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e-~dnA~~ 1376 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEE-YDNAII 1376 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhccc-HHHHHH
Confidence 6666666653 45555555555332 3333 45678888887777766 988874
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.7e-19 Score=169.90 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=124.6
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhH
Q 043204 112 VNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG--WEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESY 189 (504)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 189 (504)
.....||+++|++|++.|++++|..+|+.|... .+..||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568999999999999999999999887542 368899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCC-----cchh
Q 043204 190 HILMKGLCNDRR-LNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAP-----KSRR 263 (504)
Q Consensus 190 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~ 263 (504)
|++|.++++.|+ .++|.++|++| .+.|+.||..+|+.++..+.+. .+++.++++ ..+..|+ ....
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM----~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQM----SQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH----HHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH----HHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccc
Confidence 999999999998 47899999999 8999999999999998765543 444444444 2333332 2444
Q ss_pred hhhhccccCCCC
Q 043204 264 HRIDLCPCNDGE 275 (504)
Q Consensus 264 ~~~~~~~~~~~~ 275 (504)
..++..++.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 455556665544
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=4.6e-15 Score=140.28 Aligned_cols=367 Identities=12% Similarity=-0.077 Sum_probs=206.5
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC------CC-CcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCC---
Q 043204 112 VNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG------WE-VKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQG--- 181 (504)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 181 (504)
......|+.|...+...|+.++|++.|++..+- .. .+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888888888888888888876431 01 12235677888888888888888888887765421
Q ss_pred CCC-C---HhhHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH---HHhcCchhHHHHHHHHHH
Q 043204 182 CYP-D---RESYHILMKGLCNDR--RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFA---LCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 182 ~~p-~---~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~ 252 (504)
..+ + ..++..+..++...| ++++|...|++. ....+. +...+..+..+ +...++.++|++.+++.+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka----l~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA----LEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH----HHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH----HHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 111 1 234555555666665 478888888877 333222 34444444444 334566777888888877
Q ss_pred HcCCCCCcchhhhhh----ccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 043204 253 RKGLKAPKSRRHRID----LCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFW 328 (504)
Q Consensus 253 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (504)
+.+ |........+ .......++++.|.+.+++.....+. +...+..+...+...|++++|...+++..+..+.
T Consensus 203 ~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 203 RLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 753 3433333322 23455667777888888877766543 5566777777777778888888888887775433
Q ss_pred cchhhHHHHHHHHhcC-------------------CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 043204 329 PSLVMYEAKLAALFKD-------------------GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMY 389 (504)
Q Consensus 329 ~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (504)
+..++..+..+|... +..+.|...++++.... +.+..++..+...|...|++++|.+.
T Consensus 280 -~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 280 -NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHH
Confidence 555666666655432 12445566666544433 22334566666777777777777777
Q ss_pred HHHHHHhcCCCCchh--hHHHHHH-HHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 390 LKKMSKQVGCVANGE--TYGILVD-GLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 390 ~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
|++..+. ...+... .+..+.. .....|+.++|...|++..+.. |+...... ....+.+++++..+
T Consensus 357 ~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 357 FQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHH
Confidence 7777654 2222111 1222222 2335677777777777776642 44332221 12333444555554
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhcC
Q 043204 467 QAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSSC 503 (504)
Q Consensus 467 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 503 (504)
.. +.+..+|..+...+...|+ +++|.+.+++.++.
T Consensus 425 ~~-p~~~~~~~~LG~~~~~~g~-~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 425 KN-GADSEALHVLAFLQELNEK-MQQADEDSERGLES 459 (472)
T ss_dssp HC-C-CTTHHHHHHHHHHHHHH-CC------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Confidence 32 3345677777777655555 99999999998764
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=8.4e-19 Score=168.76 Aligned_cols=157 Identities=13% Similarity=0.020 Sum_probs=124.9
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEK-YPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+||.||.+|++.|++++|.++|+.|.+. ..|..||+.+||+||++|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 36999999999999999999999887632 11678999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCh-hHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 88 RTYARAGQL-NEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 88 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
.++++.|+. +.|.++|++|.+.|+.||..+|+.++.+..+.+-++.+.++...+...+...|.+.+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999975 788999999999999999999999987666655444443333222222112233556677777787665
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=6.7e-16 Score=128.91 Aligned_cols=208 Identities=13% Similarity=-0.034 Sum_probs=106.1
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+...+..+...+.+.|++++|+..|+++.+..|+ +...+..+..++.+.|++++|...|++..+.. |.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3445566667777777777777777777777666 66777777777777777777777777777665 5555666666
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 166 (504)
..++...+.. . .. .....|++++|+..|++.....+ .+...+..+..++...|+
T Consensus 80 g~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 80 SEAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCC
Confidence 6666666000 0 00 00011444555554444443211 123344444455555555
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHH
Q 043204 167 SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
+++|+..|++..+.. .+...+..+..++...|++++|...|++. .+.. +.+...+..+..++...|++++|..
T Consensus 134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~-P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA----LEQA-PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHHS-TTCHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 555555555554443 34444555555555555555555555554 2222 2244455555555555555555555
Q ss_pred HHHHH
Q 043204 247 ILEKI 251 (504)
Q Consensus 247 ~~~~~ 251 (504)
.+++.
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55444
No 38
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.70 E-value=4.5e-13 Score=129.01 Aligned_cols=445 Identities=9% Similarity=0.004 Sum_probs=269.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC---hhHH
Q 043204 23 SPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ---LNEA 99 (504)
Q Consensus 23 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a 99 (504)
...+.+..|+..+..+|. |..+|..++..+.+.++++.+..+|+++...- |.....|...+..-.+.++ ++.+
T Consensus 47 ~~~d~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred CCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 355667778888888887 99999999999999999999999999999875 6777788888888888888 9999
Q ss_pred HHHHHHhhhCC-CCccHHHHHHHHHHHHhcchH--------HHHHHHHHHhhcCCCC-cch-HHHHHHHHHHHh------
Q 043204 100 VSLFKNLSQFN-CVNWTQSFNTLLKEMVKESKL--------EAAHILFLRSCYGWEV-KSR-IQSLNLLMDVLC------ 162 (504)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~------ 162 (504)
.++|+...... ..|+...|...+....+.++. +...++|+.....-|. .++ ...|...+....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999988765 246777787777766555443 4455788887765555 443 457777766543
Q ss_pred ---hcCCHHHHHHHHHHhhhCCCCCCHhhHHH---HHHHH----------HhcCCHHHHHHHHHHHHHHHhhCCCC----
Q 043204 163 ---QCRRSDLALHVFQEMDFQGCYPDRESYHI---LMKGL----------CNDRRLNEATHLLYSMFWRISQKGSG---- 222 (504)
Q Consensus 163 ---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~---- 222 (504)
..++++.+.++|++........-..+|.. .-... -...+++.|...+.++... ..++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~--~~~l~r~~p 280 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI--TKGLKRNLP 280 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH--TTTCCCCCC
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH--HHhHhhccc
Confidence 23457889999999886311111123321 11111 0112334444444443111 01111
Q ss_pred -----------c-----C---HHHHHHHHHHHHhcC-------chhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCC
Q 043204 223 -----------E-----D---IVIYRTLLFALCDQG-------KIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGED 276 (504)
Q Consensus 223 -----------~-----~---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (504)
| + ...|...+..--..+ ..+.+..+|++.+.. .|.....+...+..+...|+
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCc
Confidence 1 0 133444443322222 123345667776665 23444444444555556667
Q ss_pred hHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---------Cc------------chhhH
Q 043204 277 IEGAK-SLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGF---------WP------------SLVMY 334 (504)
Q Consensus 277 ~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~ 334 (504)
.+.|. .++++.....+ .+...|...+...-+.|+++.|..+|+.+..... .| ...+|
T Consensus 359 ~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 77775 77777775432 2444555566666666778888888777765310 02 12356
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 043204 335 EAKLAALFKDGMVDEALEVIEEEMVK-GTFVPTVRVYNILLKGLCDA-GNSAVAVMYLKKMSKQVGCVANGETYGILVDG 412 (504)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 412 (504)
...+....+.|..+.|..+|..+... ....+ ..|...+..-.+. ++.+.|.++|+...+.+ +.+...+...++.
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~f 513 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--DIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence 66666666777778888888775544 21222 2333222222333 44778888888777652 2344455666776
Q ss_pred HhhcCcHHHHHHHHHHHHhcCcCC--CcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043204 413 LCRDGRFLEASRVLEEMLIRSYWP--CVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVAS 482 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 482 (504)
....|+.+.|..+|++.......+ ....|..++..-.+.|+.+.+.++.+++.+. .|+......+..-
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 677778888888888777653111 2345666666666778888888888887754 3555555555554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=9.3e-15 Score=136.29 Aligned_cols=380 Identities=13% Similarity=0.014 Sum_probs=200.1
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCCh---hHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRI---TEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..+...+.+.|++++|+++|++..+. + +..++..|...+...|+. ++|.++|++..+. ++..+..+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~ 77 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC--------------------------------CHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHH
Confidence 44677778888999999999888876 4 566666677777777777 8888888887753 4555666666
Q ss_pred HHHhcC-----ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHH---HHHHHHHhhcCCCCcchHHHHHHHHHH
Q 043204 89 TYARAG-----QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEA---AHILFLRSCYGWEVKSRIQSLNLLMDV 160 (504)
Q Consensus 89 ~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (504)
.+...+ ++++|+..|+...+.+... .+..|...|...+..+. +...+....... +...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~ 150 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLL 150 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHH
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHH
Confidence 454444 6778888888877766432 44556666665554333 222332222111 12234445555
Q ss_pred HhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 043204 161 LCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDR---RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD 237 (504)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (504)
|...+.++++.+....+.+.-...++..+..|...|...| +.++|...|++. .+.|.. +...+..+...|..
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a----a~~g~~-~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG----VSRGTV-TAQRVDSVARVLGD 225 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHTTCS-CHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH----HHCCCH-HHHHHHHHHHHHhC
Confidence 5555533333332222111111112235555555555566 566666666555 344322 33333444444433
Q ss_pred c----CchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcC
Q 043204 238 Q----GKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAID-L--YNEG 310 (504)
Q Consensus 238 ~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~ 310 (504)
. +++++|.++|++.. . -+...+..+... + ...+
T Consensus 226 g~~~~~d~~~A~~~~~~aa-~---------------------------------------g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 226 ATLGTPDEKTAQALLEKIA-P---------------------------------------GYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp GGGSSCCHHHHHHHHHHHG-G---------------------------------------GSTHHHHHHHHHHHHSGGGC
T ss_pred CCCCCCCHHHHHHHHHHHc-C---------------------------------------CCHHHHHHHHHHHHhCCCCC
Confidence 3 34555555555543 2 134445555444 2 3457
Q ss_pred ChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCC-----CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cC
Q 043204 311 RIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDG-----MVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD----AG 381 (504)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 381 (504)
++++|...|++..+.| +...+..|...|. .| ++++|...|+++. . -+...+..|...|.. ..
T Consensus 266 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~---g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--G---REVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--T---TCHHHHHHHHHHHHTTTTSSC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--C---CCHHHHHHHHHHHHCCCCCCc
Confidence 8888888888888776 5566666766666 44 8888888888633 2 345566666666655 34
Q ss_pred ChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh----cCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHH
Q 043204 382 NSAVAVMYLKKMSKQVGCVANGETYGILVDGLCR----DGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEA 457 (504)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 457 (504)
++++|...|++..+. | +......|..+|.. ..+.++|...|+...+.|. ++.......+......++..+|
T Consensus 337 d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a 411 (452)
T 3e4b_A 337 YPQKALDHLLTAARN-G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEG 411 (452)
T ss_dssp CHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHH
Confidence 788888888887765 4 23445556666653 4578888888888887762 2222222222222334456667
Q ss_pred HHHHHHHHH
Q 043204 458 VMWLEEMIS 466 (504)
Q Consensus 458 ~~~~~~~~~ 466 (504)
.++.++..+
T Consensus 412 ~~~~~~~~~ 420 (452)
T 3e4b_A 412 QRLVQQELA 420 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666553
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.9e-14 Score=125.15 Aligned_cols=247 Identities=10% Similarity=-0.009 Sum_probs=194.9
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc--HHHHHH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK--DSVFAT 85 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 85 (504)
...+......+...|++++|+..|+++.+..|. +...+..+..++...|++++|.+.+++..+....++ ...|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 345566778899999999999999999999876 777899999999999999999999999998431122 234889
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
+...+...|++++|++.|+...+... .+..++..+...+...|++++|...|++..... +.+...|..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999988653 346789999999999999999999999998653 334556677773444456
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhCCCCc----CHHHHHHHHHHHHhc
Q 043204 166 RSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR---LNEATHLLYSMFWRISQKGSGE----DIVIYRTLLFALCDQ 238 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ 238 (504)
++++|.+.|++..+.. +.+...+..+..++...|+ +++|...++++.......+ .+ -..+|..+...|...
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG-AKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHHc
Confidence 9999999999998864 2246777788888888888 8889999998854322211 11 135788899999999
Q ss_pred CchhHHHHHHHHHHHcCCCCCcchhh
Q 043204 239 GKIQDAMQILEKILRKGLKAPKSRRH 264 (504)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (504)
|++++|.+.++++.+.. |++....
T Consensus 235 ~~~~~A~~~~~~al~~~--p~~~~a~ 258 (272)
T 3u4t_A 235 RDKVKADAAWKNILALD--PTNKKAI 258 (272)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred CCHHHHHHHHHHHHhcC--ccHHHHH
Confidence 99999999999999874 4443333
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=7.3e-15 Score=122.59 Aligned_cols=209 Identities=11% Similarity=-0.052 Sum_probs=131.4
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...+..+...+.+.|++++|...|++..+.. |.+...+..+..++.+.|++++|+..|++..+.++ .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 44455555555555556666666555555554 44455555555555555555555555555554431 12333333333
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
.+...+.. . +. .+...|++++|+..|++..+... -+...+..+..++...|+++
T Consensus 82 ~~~~~~~~------------~----~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 82 AYVALYRQ------------A----ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHT------------C----SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhh------------h----hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChH
Confidence 33322100 0 00 01123999999999999988642 25778888999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSL 283 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 283 (504)
+|...|++. .+.. .+...+..+..+|...|++++|...|++..+. .|+.......+..++...|++++|...
T Consensus 136 ~A~~~~~~a----l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 136 KAEASLKQA----LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp HHHHHHHHH----HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHH----Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999 5554 57889999999999999999999999999986 567777778888999999999999999
Q ss_pred HHHHH
Q 043204 284 INEAL 288 (504)
Q Consensus 284 ~~~~~ 288 (504)
+++..
T Consensus 208 ~~~~~ 212 (217)
T 2pl2_A 208 AALEH 212 (217)
T ss_dssp -----
T ss_pred HHHHh
Confidence 88765
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-14 Score=123.91 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=188.0
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCC--cc----HHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCE--CK----DSVF 83 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 83 (504)
.+..+...+...|++++|+..|+++.+.. .+..+|..+..++...|++++|.+.+++..+.... ++ ..++
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46678889999999999999999999984 48889999999999999999999999998875311 11 5778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
..+...+...|++++|...|+...+.... ...+...|++++|...+++..... +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHH
Confidence 99999999999999999999998876533 234667799999999999987652 3356678889999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhH
Q 043204 164 CRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQD 243 (504)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (504)
.|++++|.+.|++..+.. +.+..++..+...+...|++++|...+++. .... +.+...+..+..++...|++++
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----l~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA----IEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH----HHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999998764 336788999999999999999999999988 4433 3357889999999999999999
Q ss_pred HHHHHHHHHHc
Q 043204 244 AMQILEKILRK 254 (504)
Q Consensus 244 a~~~~~~~~~~ 254 (504)
|.+.+++..+.
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=2.3e-14 Score=133.62 Aligned_cols=378 Identities=10% Similarity=0.008 Sum_probs=238.7
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCh---hHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQL---NEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
.+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|+..|+...+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 45677788899999999999988766 334455566666667777 8999999888755 3444556666455
Q ss_pred hcc-----hHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHH---HHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043204 127 KES-----KLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSD---LALHVFQEMDFQGCYPDRESYHILMKGLCN 198 (504)
Q Consensus 127 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 198 (504)
..+ +.++|...|++...... + ..+..|...|...+..+ ++.+.+......| +......+...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~--~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE--G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC--S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC--H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 544 78899999998876432 2 25566777777665443 3455555555443 34566677777777
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCC
Q 043204 199 DRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQG---KIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGE 275 (504)
Q Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (504)
.+.++++......+...... . +...+..|...|...| +.++|++.|++..+.+..
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~--~--~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------------------ 211 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALN--T--TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------------------ 211 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTT--T--CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------------------
T ss_pred CCCcccCHHHHHHHHHHHHc--C--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------------------
Confidence 77665555544333221122 2 2337778888888888 888888888888876532
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCcchhhHHHHHHH-H--hcCCCHH
Q 043204 276 DIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE----GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAA-L--FKDGMVD 348 (504)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~ 348 (504)
+...+..+...|... ++.++|...|++.. .| +...+..+... + ...++++
T Consensus 212 -------------------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 212 -------------------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp -------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred -------------------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence 444434455555443 68999999999988 43 56667777766 4 5689999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh----cCcH
Q 043204 349 EALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG-----NSAVAVMYLKKMSKQVGCVANGETYGILVDGLCR----DGRF 419 (504)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 419 (504)
+|...|+++. ..| +...+..+...|. .| ++++|.+.|++.. . -+...+..|...|.. ..+.
T Consensus 269 ~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 269 QMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp HHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCH
T ss_pred HHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCH
Confidence 9999999955 433 5667777777776 55 9999999999876 3 356677777777776 4499
Q ss_pred HHHHHHHHHHHhcCcCCCcchHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHH
Q 043204 420 LEASRVLEEMLIRSYWPCVETYNVLIRGLCS----IGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRK 495 (504)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~ 495 (504)
++|.+.|++..+.| +......|...|.. ..+.++|..++++..+.|. ++.......+.. .....+.++|..
T Consensus 339 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~-~~~~~~~~~a~~ 413 (452)
T 3e4b_A 339 QKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEA-PLTPAQRAEGQR 413 (452)
T ss_dssp HHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 99999999999876 45566677777764 5689999999999998774 333333333322 122234667777
Q ss_pred HHHHhh
Q 043204 496 TLEQLS 501 (504)
Q Consensus 496 ~~~~~~ 501 (504)
+.++-.
T Consensus 414 ~~~~~~ 419 (452)
T 3e4b_A 414 LVQQEL 419 (452)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.8e-14 Score=122.93 Aligned_cols=228 Identities=11% Similarity=-0.025 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC----HH
Q 043204 151 IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED----IV 226 (504)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ 226 (504)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++++....... .++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM--RADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ccchHHHHH
Confidence 4456777777888888888888888877765 577778888888888888888888888774332221 112 46
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043204 227 IYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDL 306 (504)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 306 (504)
++..+..++...|++++|...|+++.+... +. ..+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------------~~-------~~~ 115 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR--------------------------------------TA-------DIL 115 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------------------------------------CH-------HHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCc--------------------------------------hh-------HHH
Confidence 777788888888888888888888877521 11 234
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHH
Q 043204 307 YNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVA 386 (504)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 386 (504)
...|++++|...++.+..... .+...+..+...+...|++++|...+++++... +.+..++..+..+|...|++++|
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHH
Confidence 444667777777777766532 245566677777777777777777777755543 33556677777777777888888
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 043204 387 VMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIR 432 (504)
Q Consensus 387 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 432 (504)
...+++..+. .+.+...+..+..+|.+.|++++|.+.+++..+.
T Consensus 193 ~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 193 IADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8777777764 2334566777777777788888888777777664
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.2e-13 Score=118.60 Aligned_cols=203 Identities=11% Similarity=-0.026 Sum_probs=157.3
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5567777788888888888888888887765 55677788888888888888888888888776653 346677788888
Q ss_pred HHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043204 125 MVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNE 204 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 204 (504)
+...|++++|...++++......+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887621223356677788888888888999988888887754 2356778888888888899999
Q ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 043204 205 ATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 205 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 255 (504)
|...++++ .... +.+...+..+...+...|+.++|.+.++++.+..
T Consensus 194 A~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLF----AQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH----HTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----HHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 98888887 4432 3466778888888888899999999998888763
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=8.8e-15 Score=124.91 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=87.7
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+...+... .+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 34444444444444444444444444433 33334444444444444444444444444443321 12334444444444
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEAT 206 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 206 (504)
..|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555444444321 1123344455555555555555555555555432 124445555555556666666666
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 207 HLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
..++++ .... +.+..++..+..+|...|++++|.+.++++.+.
T Consensus 180 ~~~~~~----~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAV----TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHH----HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHH----HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666555 2221 123455555666666666666666666666554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=3e-13 Score=117.57 Aligned_cols=222 Identities=11% Similarity=0.012 Sum_probs=183.3
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCccHHHHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSE----SNRITEMKEVIDQMKGDSCECKDSVFA 84 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
.++..+...+...|++++|+..|++..+. + +..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL--K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44566778888899999999999999884 5 66788888888888 999999999999988875 677788
Q ss_pred HHHHHHHh----cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cchHHHHHHHHHHhhcCCCCcchHHHHHH
Q 043204 85 TAIRTYAR----AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK----ESKLEAAHILFLRSCYGWEVKSRIQSLNL 156 (504)
Q Consensus 85 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (504)
.+...|.. .+++++|++.|+...+.+ +..++..+...|.. .+++++|...|++..... +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 88888988 999999999999988875 46778888888888 899999999999887653 3456677
Q ss_pred HHHHHhh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 043204 157 LMDVLCQ----CRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN----DRRLNEATHLLYSMFWRISQKGSGEDIVIY 228 (504)
Q Consensus 157 l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (504)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++. .+.+ +...+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a----~~~~---~~~a~ 221 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA----CELE---NGGGC 221 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH----HHTT---CHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH----HhCC---CHHHH
Confidence 7778887 899999999999988764 56777888888888 89999999999888 4543 26677
Q ss_pred HHHHHHHHh----cCchhHHHHHHHHHHHcC
Q 043204 229 RTLLFALCD----QGKIQDAMQILEKILRKG 255 (504)
Q Consensus 229 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 255 (504)
..+...|.. .+++++|.+.|++..+.+
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788888888 889999999999988875
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.3e-13 Score=116.09 Aligned_cols=204 Identities=7% Similarity=-0.081 Sum_probs=125.5
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+...+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455555566666666666666666655544 3445555666666666666666666666655543 223445556666
Q ss_pred HHHhc-chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043204 124 EMVKE-SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRL 202 (504)
Q Consensus 124 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 202 (504)
.+... |++++|...++++...+..+.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666665521222335566667777777777777777777776653 22466677777777777777
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 203 NEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
++|...++++ .......+...+..+...+...|+.+.+..+++.+.+.
T Consensus 164 ~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKY----QSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHH----HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777776 33222135556666667777777777777777777654
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=2.1e-13 Score=118.53 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc--CHHHHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE--DIVIYRTLL 232 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 232 (504)
......+...|++++|...|++..+... .+...+..+..++...|++++|...++++ ......+ ....|..+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETY----FSKVNATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHH----HTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHH----HhccCchhHHHHHHHHHH
Confidence 3344555556666666666666555421 13335555555666666666666666555 2211111 122355555
Q ss_pred HHHHhcCchhHHHHHHHHHHHc
Q 043204 233 FALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.++...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhc
Confidence 5556666666666666555553
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=2.2e-13 Score=116.89 Aligned_cols=195 Identities=13% Similarity=-0.006 Sum_probs=117.5
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+...|++++|+..|+++.+..|+ +..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555566666666666666666666554 55566666666666666666666666666554 34555566666666
Q ss_pred HhcCChhHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVN-WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDL 169 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (504)
...|++++|.+.|+.+.+.+..| +...+..+...+...|++++|...|++..... +.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666665522222 34455566666666666666666666665432 1234455666666666666666
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 170 ALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 170 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
|...++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666665543 234455556666666666666666666665
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=6.7e-15 Score=128.26 Aligned_cols=227 Identities=8% Similarity=-0.057 Sum_probs=178.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCC-cchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC
Q 043204 17 IIKKQKSPLTALKIFKEAKEKYPNYR-HNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ 95 (504)
Q Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (504)
.+...|++++|+..|+++.+..|... .+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 34557899999999999998743211 146778899999999999999999999999876 6678889999999999999
Q ss_pred hhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043204 96 LNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQ 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (504)
+++|...|+...+... .+..++..+...+...|++++|...|+++.... |+.......+..+...|++++|...++
T Consensus 93 ~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999988653 346788999999999999999999999987643 333333444555577799999999998
Q ss_pred HhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC---cCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 043204 176 EMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSG---EDIVIYRTLLFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 176 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 252 (504)
+..... +++...+ .++..+...++.++|...++.. ...... .+..++..+..+|...|++++|...|++..
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKAD----ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHH----CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHH----hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 877653 2343444 4677778888889999998877 332211 125778889999999999999999999988
Q ss_pred Hc
Q 043204 253 RK 254 (504)
Q Consensus 253 ~~ 254 (504)
+.
T Consensus 243 ~~ 244 (275)
T 1xnf_A 243 AN 244 (275)
T ss_dssp TT
T ss_pred hC
Confidence 75
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=2.5e-13 Score=114.21 Aligned_cols=199 Identities=10% Similarity=-0.095 Sum_probs=171.5
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
...+..+...+...|++++|+..|+++.+..|. +...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 345677888999999999999999999998776 78899999999999999999999999999876 66778899999
Q ss_pred HHHHhc-CChhHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 88 RTYARA-GQLNEAVSLFKNLSQFNCVN-WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 88 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
..+... |++++|...|+.+.+.+..| +...+..+...+...|++++|...|+++.... +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcC
Confidence 999999 99999999999998832223 35778899999999999999999999987653 234677888999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 166 RSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
++++|.+.+++..+.....+...+..+...+...|+.+.+..+++.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999987643246777888888889999999999999887
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.5e-13 Score=124.09 Aligned_cols=231 Identities=11% Similarity=0.043 Sum_probs=189.8
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCC-hhHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNR-ITEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
.|..+..++...|++++|+..|+++++..|+ +..+|+.+..++...|+ +++|+..|+++.+.. +.+..+|..+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4667788888999999999999999999887 88999999999999997 999999999999987 677888999999
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh-cCCH
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ-CRRS 167 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 167 (504)
++...|++++|+..|+.+.+.+. .+..+|..+..++.+.|++++|+..|+++.... +.+...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998773 457888999999999999999999999998653 2356788888888888 5665
Q ss_pred HHH-----HHHHHHhhhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-
Q 043204 168 DLA-----LHVFQEMDFQGCYPDRESYHILMKGLCNDR--RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQG- 239 (504)
Q Consensus 168 ~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 239 (504)
++| ++.|++...... -+...|+.+...+...| ++++|.+.+.++ .....+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~------~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL------QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH------TTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh------ccCCCCHHHHHHHHHHHHHHhc
Confidence 777 588888877542 25678888888888877 688888877654 122345778888888888874
Q ss_pred --------chhHHHHHHHHH-HHc
Q 043204 240 --------KIQDAMQILEKI-LRK 254 (504)
Q Consensus 240 --------~~~~a~~~~~~~-~~~ 254 (504)
..++|.++++++ .+.
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHHHh
Confidence 258888888887 553
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=5.7e-14 Score=130.16 Aligned_cols=279 Identities=10% Similarity=-0.044 Sum_probs=198.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcch----hcHHHHHHHHhccCChhHHHHHHHHhhcC----C-CCccHHHH
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNG----PVYASMIGILSESNRITEMKEVIDQMKGD----S-CECKDSVF 83 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 83 (504)
.+...+...|++++|+..|+++.+..|+ +. .+|..+...+...|++++|.+.+++..+. + .+....++
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4556778889999999999999988665 33 46788888899999999999998887653 1 12334568
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCC-----CCccHHHHHHHHHHHHhcch-----------------HHHHHHHHHHh
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFN-----CVNWTQSFNTLLKEMVKESK-----------------LEAAHILFLRS 141 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~ 141 (504)
..+...|...|++++|...|++..+.. ......++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 888889999999999999998766431 12334577888888999999 88888888776
Q ss_pred hcC----CCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 142 CYG----WEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCY-PD----RESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 142 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
... ........++..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 431 111223457778888899999999999999887653110 11 226777888888999999999999888
Q ss_pred HHHHhhCCCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcC
Q 043204 213 FWRISQKGSGE-DIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRG 291 (504)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 291 (504)
.......+..+ ...++..+..+|...|++++|...+++..........
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------- 338 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD------------------------------- 338 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-------------------------------
Confidence 65444332221 2456778888888999999999998887653110000
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043204 292 GIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTK 325 (504)
Q Consensus 292 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (504)
.......+..+...+...|++++|...+++..+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0012345666777777888888888888877764
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.8e-12 Score=112.55 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=137.8
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCccHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR----AGQLNEAVSLFKNLSQFNCVNWTQSFN 119 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6667777788888888888888888888773 345667777778887 888888888888877765 456677
Q ss_pred HHHHHHHh----cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh----cCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043204 120 TLLKEMVK----ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ----CRRSDLALHVFQEMDFQGCYPDRESYHI 191 (504)
Q Consensus 120 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 191 (504)
.+...|.. .+++++|...|++..... +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 77777777 788888888887776542 44566777777777 778888888887777754 4556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHc
Q 043204 192 LMKGLCN----DRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD----QGKIQDAMQILEKILRK 254 (504)
Q Consensus 192 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 254 (504)
+...+.. .+++++|...|++. .+.+ +...+..+...|.. .+++++|...|++..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a----~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKA----CDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHH----HHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHH----HHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 6666666 77777777777776 3432 34566666777777 67777777777766654
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.9e-11 Score=117.81 Aligned_cols=426 Identities=9% Similarity=0.003 Sum_probs=288.4
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCC---hhHHHHHHHHhhcCC-CCccHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNR---ITEMKEVIDQMKGDS-CECKDSV 82 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 82 (504)
|...|..++..+.+.+.++.+..+|++++...|. ....|...+..-.+.++ ++.+.++|++..... .+|+...
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~---~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL---MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4566888999999999999999999999999887 88889999999889998 999999999999875 1378888
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHhhh-CCC-Cc-cHHHHHHHHHHHH---------hcchHHHHHHHHHHhh
Q 043204 83 FATAIRTYARAGQL--------NEAVSLFKNLSQ-FNC-VN-WTQSFNTLLKEMV---------KESKLEAAHILFLRSC 142 (504)
Q Consensus 83 ~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 142 (504)
|...+....+.++. +.+.++|+.... .|. .+ +...|...+.... ..++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888777666554 334578877553 344 33 3457777776543 3456888999999998
Q ss_pred cCCCCcchHHHHHH---HHHHHh----------hcCCHHHHHHHHHHhhh--CCCC---CC-------------------
Q 043204 143 YGWEVKSRIQSLNL---LMDVLC----------QCRRSDLALHVFQEMDF--QGCY---PD------------------- 185 (504)
Q Consensus 143 ~~~~~~~~~~~~~~---l~~~~~----------~~~~~~~a~~~~~~~~~--~~~~---p~------------------- 185 (504)
.-+ ...-..+|.. +...+. ...+++.|...+.++.. .++. |.
T Consensus 222 ~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 222 CQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred hCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 532 2112233322 211110 11233445555554322 1111 11
Q ss_pred -HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHH-HHHHHHHHcCC
Q 043204 186 -RESYHILMKGLCNDR-------RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAM-QILEKILRKGL 256 (504)
Q Consensus 186 -~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~ 256 (504)
...|...+..--..+ ..+.+..+|++.+ .. ..-+...|...+..+...|+.++|. ++|+.....
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL----~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-- 373 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA----QH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-- 373 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH----HH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH----HH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--
Confidence 122333333211211 1234566777773 33 2336778888888888889999997 999999875
Q ss_pred CCCcchhhhhhccccCCCCChHHHHHHHHHHHHcC---------CCCC------------hhhHHHHHHHHHhcCChhHH
Q 043204 257 KAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRG---------GIPS------------LASYSAMAIDLYNEGRIVEG 315 (504)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ll~~~~~~~~~~~a 315 (504)
.|.+.......+......|+++.|..+|+.++... ..|+ ...|...+....+.|+.+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 35555555556667778899999999999988641 0132 23577777777777999999
Q ss_pred HHHHHHHHHCCCCcchhhHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043204 316 DKVLDEMRTKGFWPSLVMYEAKLAALFKD-GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (504)
..+|.+..+.-.......|...+..-.+. ++.+.|..+|+..+... +.+...+...+......|+.+.|..+|++..
T Consensus 454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999998861111233443333333344 55999999999978774 3455667788888888999999999999998
Q ss_pred HhcCCCC--chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHH
Q 043204 395 KQVGCVA--NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGL 448 (504)
Q Consensus 395 ~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (504)
.. ...+ ....|...+..-.+.|+.+.+.++.+++.+.- |+......+++-|
T Consensus 532 ~~-~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 532 DK-ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp TT-SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 65 2111 34678888888889999999999999999873 6666666665554
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=1.8e-13 Score=119.21 Aligned_cols=245 Identities=12% Similarity=-0.077 Sum_probs=135.3
Q ss_pred cchHHHHHHHHHHhhcCCCC--cchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 043204 128 ESKLEAAHILFLRSCYGWEV--KSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEA 205 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 205 (504)
.|++++|+..|+++...... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46666777777666654211 1245566677777777777777777777776653 22566677777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHH
Q 043204 206 THLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLIN 285 (504)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 285 (504)
...|+++ ..... .+...+..+..+|...|++++|...++++.+..
T Consensus 97 ~~~~~~a----l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------------------------------ 141 (275)
T 1xnf_A 97 YEAFDSV----LELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD------------------------------ 141 (275)
T ss_dssp HHHHHHH----HHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHH----HhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------------
Confidence 7777776 33221 245666777777777777777777777776642
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCc
Q 043204 286 EALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVP 365 (504)
Q Consensus 286 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (504)
|+.......+..+...|++++|...+.+...... ++... ..++..+...++.++|...+++ .... .|
T Consensus 142 --------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~~~-~~~~--~~ 208 (275)
T 1xnf_A 142 --------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWG-WNIVEFYLGNISEQTLMERLKA-DATD--NT 208 (275)
T ss_dssp --------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTH-HHHHHHHTTSSCHHHHHHHHHH-HCCS--HH
T ss_pred --------CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHH-HHHHHHHHHhcCHHHHHHHHHH-Hhcc--cc
Confidence 1222222222333444667777777766555422 22222 2355555666666666666665 2221 11
Q ss_pred c-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHH
Q 043204 366 T-----VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVL 426 (504)
Q Consensus 366 ~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (504)
+ ...+..+...|...|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 1 344555555555666666666666655532 2321 222233444555555554443
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=6e-13 Score=120.10 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhCCCCcCHHHHH
Q 043204 151 IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR-LNEATHLLYSMFWRISQKGSGEDIVIYR 229 (504)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 229 (504)
...|+.+...+...|++++|++.|++..+... -+...|+.+..++...|+ +++|+..|+++ ...... +...|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a----l~l~P~-~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAI----IEEQPK-NYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHH----HHHCCC-CHHHHH
Confidence 44566666777777778888887777776532 245667777777777775 78887777777 443322 566777
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
.+..++...|++++|+..|+++++.... +...|..+..++...
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-------------------------------------~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-------------------------------------NYHAWQHRQWVIQEF 213 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-------------------------------------CHHHHHHHHHHHHHc
Confidence 7777777777777777777777765322 556666676777777
Q ss_pred CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc-CCCHHHH-----HHHHHHHHhcCCCCccHHHHHHHHHHHHhcC--
Q 043204 310 GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK-DGMVDEA-----LEVIEEEMVKGTFVPTVRVYNILLKGLCDAG-- 381 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 381 (504)
|++++|+..|+++++..+. +...|+.+..++.. .|..++| +..|++++... +-+...|..+...+...|
T Consensus 214 g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 214 KLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGG
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCcc
Confidence 7777777777777776543 56667777777776 4544555 36666655543 234556666666666666
Q ss_pred ChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcC---------cHHHHHHHHHHH-Hhc
Q 043204 382 NSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDG---------RFLEASRVLEEM-LIR 432 (504)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~ 432 (504)
++++|++.+.++ + ....+...+..+..+|.+.| ..++|.++++++ .+.
T Consensus 291 ~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 291 KYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp GCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 567777777666 2 23344556666777776653 246777777776 443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=5.5e-14 Score=130.01 Aligned_cols=282 Identities=11% Similarity=-0.037 Sum_probs=146.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-hhcHHHHHHHHhccCChhHHHHHHHHhhcC----CCCc-cHHHHHHH
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHN-GPVYASMIGILSESNRITEMKEVIDQMKGD----SCEC-KDSVFATA 86 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 86 (504)
.....+...|++++|+..|+++.+..|+-.+. ..++..+...+...|++++|...+++.... +-.| ...++..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34455556666666666666666654431000 234555556666666666666666554321 1011 12334555
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 166 (504)
...+...|++++|...+++..+..... ........++..+...|...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISREL-------------------------------NDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------------------TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhc-------------------------------ccccchHHHHHHHHHHHHHcCC
Confidence 555555555555555555443321000 0000012234444444555555
Q ss_pred --------------------HHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC
Q 043204 167 --------------------SDLALHVFQEMDFQ----GCYP-DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS 221 (504)
Q Consensus 167 --------------------~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 221 (504)
+++|.+.+++..+. +..| ...++..+...+...|++++|...+++........+.
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 55555555443321 1011 1245666777777888888888888777544333322
Q ss_pred CcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHH
Q 043204 222 GED-IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYS 300 (504)
Q Consensus 222 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (504)
.+. ..++..+...|...|++++|...+++.........+. .....++.
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~ 271 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-------------------------------AVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc-------------------------------hHHHHHHH
Confidence 111 3367777888888888888888888776531110000 00134555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC----Cc-chhhHHHHHHHHhcCCCHHHHHHHHHH
Q 043204 301 AMAIDLYNEGRIVEGDKVLDEMRTKGF----WP-SLVMYEAKLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (504)
.+...+...|++++|...+++..+... .+ ...++..+...|...|++++|...+++
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666677777777777766654210 00 133455555566666666666666655
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.2e-13 Score=127.84 Aligned_cols=214 Identities=12% Similarity=-0.020 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHHhcCC--------------------HHHH
Q 043204 151 IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGC-YPD----RESYHILMKGLCNDRR--------------------LNEA 205 (504)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a 205 (504)
..++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566667777777777777777776654210 011 3467778888888899 8999
Q ss_pred HHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHH
Q 043204 206 THLLYSMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLI 284 (504)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 284 (504)
...+++........+..+. ..++..+...|...|++++|...+++..+.....+..
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------- 223 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK----------------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH-----------------------
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc-----------------------
Confidence 9988887554444433222 3467778888888999999999888876531110000
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCc-chhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 043204 285 NEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG----FWP-SLVMYEAKLAALFKDGMVDEALEVIEEEMV 359 (504)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (504)
......+..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|...+++++.
T Consensus 224 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 224 --------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0012356666777777788888888887765421 110 134556666777777777777777766443
Q ss_pred cCCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 360 KGTFVPT----VRVYNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 360 ~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
.....++ ..++..+...|...|++++|.+.+++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111111 33555566666666777777666666543
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=9.3e-14 Score=118.50 Aligned_cols=200 Identities=15% Similarity=0.043 Sum_probs=155.6
Q ss_pred CCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHH
Q 043204 5 WPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFA 84 (504)
Q Consensus 5 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
......+..+...+...|++++|+..|+++.+..|. +...+..+...+...|++++|.+.++++.+.. +.+..++.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 344566777888899999999999999999998776 78889999999999999999999999998876 56778899
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 164 (504)
.+...+...|++++|.+.|+.+.+... .+...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHc
Confidence 999999999999999999999887653 346788889999999999999999999987653 23466788899999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
|++++|.+.|+++.+.. +.+..++..+..++...|++++|...++++
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999988764 336778899999999999999999999988
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=1.4e-13 Score=127.45 Aligned_cols=285 Identities=14% Similarity=0.012 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc-CH
Q 043204 151 IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR----ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE-DI 225 (504)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 225 (504)
...+..+...+...|++++|...|++..+.+.. +. ..+..+...+...|++++|...+++........+..+ ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344555667788888888998888888776322 22 4677788888889999999999888865433333322 34
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 043204 226 VIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAID 305 (504)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 305 (504)
.++..+...|...|++++|...+++..+...... + .......+..+...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~---------------~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG----------------D---------------RLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------C---------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh----------------c---------------hHHHHHHHHHHHHH
Confidence 6778888889999999999999988765311000 0 00123456666777
Q ss_pred HHhcCC-----------------hhHHHHHHHHHHHC----CC-CcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 043204 306 LYNEGR-----------------IVEGDKVLDEMRTK----GF-WPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTF 363 (504)
Q Consensus 306 ~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (504)
+...|+ +++|...+++..+. +. .....++..+...|...|++++|...+++++....-
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777788 88888888776542 11 113357778888999999999999999885543211
Q ss_pred Ccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC----chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCc-
Q 043204 364 VPT----VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA----NGETYGILVDGLCRDGRFLEASRVLEEMLIRSY- 434 (504)
Q Consensus 364 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 434 (504)
.++ ..++..+...|...|++++|...+++..+...-.. ...++..+...|...|++++|.+.+++..+..-
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 23677888899999999999999998876411111 145678888999999999999999998876411
Q ss_pred ----CCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 435 ----WPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 435 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
.....++..+...|...|++++|.+.+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111346778888999999999999999999854
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=2e-13 Score=122.59 Aligned_cols=284 Identities=11% Similarity=-0.028 Sum_probs=204.7
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-hhcHHHHHHHHhccCChhHHHHHHHHhhcC----CC-CccHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHN-GPVYASMIGILSESNRITEMKEVIDQMKGD----SC-ECKDSVFA 84 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 84 (504)
+......+...|++++|+..|+++.+..|+-.+. ...+..+...+...|++++|.+.+++..+. +- +....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3445677889999999999999999987651110 457888899999999999999999887643 21 22345688
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCC-----CCccHHHHHHHHHHHHhcch--------------------HHHHHHHHH
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFN-----CVNWTQSFNTLLKEMVKESK--------------------LEAAHILFL 139 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 139 (504)
.+...+...|++++|...+++..+.. ......++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999865421 11123477888899999999 999998888
Q ss_pred HhhcC----CCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHH
Q 043204 140 RSCYG----WEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGC-YPD----RESYHILMKGLCNDRRLNEATHLLY 210 (504)
Q Consensus 140 ~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (504)
+.... ........++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76431 11122345678888899999999999999988765310 011 2367788888999999999999999
Q ss_pred HHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHH
Q 043204 211 SMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALI 289 (504)
Q Consensus 211 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (504)
+........+..+. ..++..+...+...|++++|...+++..+.......
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------------------------- 298 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----------------------------- 298 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------------------------
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-----------------------------
Confidence 88654344332221 457778888999999999999999887664110000
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043204 290 RGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTK 325 (504)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (504)
......++..+...+...|++++|...+++..+.
T Consensus 299 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 --RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred --cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0012345666677777788888888888887764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1.6e-13 Score=123.22 Aligned_cols=283 Identities=13% Similarity=0.048 Sum_probs=186.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HHH
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPD----RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IVI 227 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ 227 (504)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++........+..+. ..+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556677778888888888877765321 2 255667777778888888888888777544333332222 456
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043204 228 YRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLY 307 (504)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 307 (504)
+..+...+...|++++|...+++..+......+. ......+..+...+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHH
Confidence 7777888888888888888888876531110000 001235555666666
Q ss_pred hcCC--------------------hhHHHHHHHHHHHC----CCC-cchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 043204 308 NEGR--------------------IVEGDKVLDEMRTK----GFW-PSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT 362 (504)
Q Consensus 308 ~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (504)
..|+ +++|...+++.... +.. .....+..+...+...|++++|...+++++....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6677 77777777765432 111 1234677778888889999999988887554321
Q ss_pred CCc----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCc
Q 043204 363 FVP----TVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN----GETYGILVDGLCRDGRFLEASRVLEEMLIRSY 434 (504)
Q Consensus 363 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 434 (504)
..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++..+...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 111 1236777788888899999999988887654111111 44677788888899999999998888766410
Q ss_pred -----CCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 435 -----WPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 435 -----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
.....++..+...|...|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111346777888888899999999999888753
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=6.4e-13 Score=121.70 Aligned_cols=235 Identities=9% Similarity=-0.018 Sum_probs=161.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchh--cHHHHHHH--HhccCChhHHH-----------HHHHHhhcCCCCccHHH
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGP--VYASMIGI--LSESNRITEMK-----------EVIDQMKGDSCECKDSV 82 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 82 (504)
+.+.+++++|..+++++.+..+.+..|.. .|..++.. ..-.++.+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 34689999999999999887555433433 33444322 12223334444 6666665432 22222
Q ss_pred ------HHHHHHHHHhcCChhHHHHHHHHhhhC----CCCc-cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCC-----
Q 043204 83 ------FATAIRTYARAGQLNEAVSLFKNLSQF----NCVN-WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWE----- 146 (504)
Q Consensus 83 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 146 (504)
+......+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|...+++......
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 223566778899999999999988764 2122 346788889999999999999999988764211
Q ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC
Q 043204 147 VKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGC-YPD----RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS 221 (504)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 221 (504)
......+++.+...|...|++++|.+.|++..+... .++ ..++..+...|...|++++|...+++........+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112345778888899999999999999988765310 111 246778888899999999999999988654444444
Q ss_pred -CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 222 -GEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 222 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
+....++..+..+|.+.|++++|...+++..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334667888889999999999999999887653
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=4.3e-12 Score=112.17 Aligned_cols=219 Identities=7% Similarity=0.030 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhc-------cCCh-------hHHHHHHHHhhc-CCCCccHHHHHHHHHH
Q 043204 25 LTALKIFKEAKEKYPNYRHNGPVYASMIGILSE-------SNRI-------TEMKEVIDQMKG-DSCECKDSVFATAIRT 89 (504)
Q Consensus 25 ~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 89 (504)
++|+.+|+++....|. +...|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..
T Consensus 33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 6899999999999887 88899888887763 5886 899999999998 44 5566789999999
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHH-HHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHh-hcCCH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQ-SFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLC-QCRRS 167 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 167 (504)
+.+.|++++|..+|++..+..+. +.. +|..++..+.+.|++++|..+|++.....+ ++...|........ ..|++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999986432 233 889999999999999999999999987533 23344444333322 36999
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC-CCCc--CHHHHHHHHHHHHhcCchhHH
Q 043204 168 DLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQK-GSGE--DIVIYRTLLFALCDQGKIQDA 244 (504)
Q Consensus 168 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a 244 (504)
++|.++|++..+.. +-+...|..++..+.+.|++++|..+|++. ... ...| ....|..++....+.|+.+.|
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a----l~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV----LTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH----HhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999998763 236788888999999999999999999998 554 2344 467888899999999999999
Q ss_pred HHHHHHHHHcC
Q 043204 245 MQILEKILRKG 255 (504)
Q Consensus 245 ~~~~~~~~~~~ 255 (504)
..+++++.+..
T Consensus 261 ~~~~~~a~~~~ 271 (308)
T 2ond_A 261 LKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998864
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=2.4e-12 Score=117.89 Aligned_cols=241 Identities=9% Similarity=-0.030 Sum_probs=147.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCC-CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-C-cCHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQG-CYPD----RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS-G-EDIVIYR 229 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~~~ 229 (504)
....+...|++++|...|++..+.- -.++ ..++..+...+...|+++.|...+++........+. . ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5556778899999999998887531 0122 356778888888999999999999888654444332 1 1245778
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
.+..+|...|++++|.+.+++..+......+. .....++..+...+...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-------------------------------QLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-------------------------------HHHHHHHHHHHHHHHHC
Confidence 88889999999999999998877541110000 00123566677777777
Q ss_pred CChhHHHHHHHHHHHC----CC-CcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHhcC
Q 043204 310 GRIVEGDKVLDEMRTK----GF-WPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTF---VPTVRVYNILLKGLCDAG 381 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 381 (504)
|++++|...+++..+. +. +....++..+...|.+.|++++|...+++++..... +.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 8888888888777662 22 224556667777777777777777777764432110 111122344455555556
Q ss_pred C---hHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 382 N---SAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 382 ~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
+ .++|+.++++.. ........+..+...|...|++++|.+.+++..+
T Consensus 318 ~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKM---LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 444544444431 1111223445555666666666666666665544
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=7e-13 Score=107.59 Aligned_cols=166 Identities=8% Similarity=-0.018 Sum_probs=124.6
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
...|..+...|...|++++|+..|+++.+.+|. +..+|..+..++.+.|++++|...++...... +.+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 345677788888888888888888888888776 77788888888888888888888888877765 55666677777
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCH
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRS 167 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 167 (504)
..+...++++.|...+....+... .+..++..+...+.+.|++++|+..|++..... +.+..+|..+..+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCH
Confidence 778888888888888887776542 345667777777778888888888887776542 22455677777777778888
Q ss_pred HHHHHHHHHhhhC
Q 043204 168 DLALHVFQEMDFQ 180 (504)
Q Consensus 168 ~~a~~~~~~~~~~ 180 (504)
++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 8888887777664
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=2.8e-12 Score=117.12 Aligned_cols=320 Identities=11% Similarity=0.005 Sum_probs=204.1
Q ss_pred CCCCCCCchHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCcchh--cHHHHHHH--HhccCChhHHH---------HHH
Q 043204 4 RWPRLLTPTYLSQII--KKQKSPLTALKIFKEAKEKYPNYRHNGP--VYASMIGI--LSESNRITEMK---------EVI 68 (504)
Q Consensus 4 ~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~ 68 (504)
..|+...-+.|-..| ...+++++|.++++++.+..+.+..|.. .|-.++.. ..-.+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 344444555666677 6899999999999998876544433433 33444432 11112333333 666
Q ss_pred HHhhcCCCCccHH----HHHHHHHHHHhcCChhHHHHHHHHhhhCCC-----CccHHHHHHHHHHHHhcchHHHHHHHHH
Q 043204 69 DQMKGDSCECKDS----VFATAIRTYARAGQLNEAVSLFKNLSQFNC-----VNWTQSFNTLLKEMVKESKLEAAHILFL 139 (504)
Q Consensus 69 ~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 139 (504)
+.+.....+.+.. .+......+...|++++|+..|++..+... .....++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 6655432111211 233445567789999999999998875421 1234578889999999999999999998
Q ss_pred HhhcCC----CCc-chHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 043204 140 RSCYGW----EVK-SRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ----GCYP-DRESYHILMKGLCNDRRLNEATHLL 209 (504)
Q Consensus 140 ~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (504)
+..... +.. ....+++.+..+|...|++++|.+.|++..+. +-.+ ...++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 876421 112 13567888999999999999999999887652 1111 1346777888999999999999999
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHH
Q 043204 210 YSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALI 289 (504)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (504)
++........+.+....++..+..+|.+.|++++|...+++..+......+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------- 298 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF--------------------------- 298 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC---------------------------
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---------------------------
Confidence 99854433334343477888899999999999999999999887533211110
Q ss_pred cCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCc-chhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043204 290 RGGIPSLASYSAMAIDLYNEGR---IVEGDKVLDEMRTKGFWP-SLVMYEAKLAALFKDGMVDEALEVIEEEM 358 (504)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (504)
....+..+...+...++ +.+|+..+++ .+..| ....+..+...|...|++++|...|++++
T Consensus 299 -----~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 299 -----YKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp -----HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11122333333333455 5555555554 22222 23345567777777888888877777644
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.2e-12 Score=122.76 Aligned_cols=214 Identities=9% Similarity=-0.073 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCCh-hHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRI-TEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSL 102 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (504)
+++++..++......|. +...+..+...+...|++ ++|.+.|++..+.. +.+..+|..+..+|...|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~~~~---~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV---EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTCCC---CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56677777777766554 788888999999999999 99999999998876 66678899999999999999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhc---------chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc--------C
Q 043204 103 FKNLSQFNCVNWTQSFNTLLKEMVKE---------SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC--------R 165 (504)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~ 165 (504)
|+...+.+ |+..++..+...+... |++++|+..|++..... +.+...|..+..+|... |
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 99988876 4468888889999998 99999999999987653 23466788888888888 8
Q ss_pred CHHHHHHHHHHhhhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhH
Q 043204 166 RSDLALHVFQEMDFQGCY--PDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQD 243 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (504)
++++|++.|++..+.... -+...|..+..+|...|++++|.+.|++. ..... .+...+..+..++...|++++
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~l~p-~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA----AALDP-AWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875320 37788889999999999999999999988 34322 256778888888888888888
Q ss_pred HHHHHHH
Q 043204 244 AMQILEK 250 (504)
Q Consensus 244 a~~~~~~ 250 (504)
|.+.+..
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 8876544
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.6e-12 Score=115.30 Aligned_cols=174 Identities=16% Similarity=0.064 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC-------CCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC------CCC
Q 043204 81 SVFATAIRTYARAGQLNEAVSLFKNLSQF-------NCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG------WEV 147 (504)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~ 147 (504)
.++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++.... ...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555554432 22223344555555555566666665555554432 112
Q ss_pred cchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC------CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC-
Q 043204 148 KSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ------GCYP-DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQK- 219 (504)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 219 (504)
+....++..+...|...|++++|.+.|++..+. +-.| ....+..+...+...|++++|...++++.......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 234556677777777778888777777776653 1112 34556777788888888888888888875432222
Q ss_pred -CCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 220 -GSGE-DIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 220 -~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
+..| ...++..+..+|...|++++|.+.++++.+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122 3456778888899999999999999888763
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=7.1e-12 Score=101.61 Aligned_cols=173 Identities=12% Similarity=0.069 Sum_probs=146.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 043204 295 SLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILL 374 (504)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (504)
+...|..+...+...|++++|+..|++..+..+. +...+..+..+|.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 6678889999999999999999999999987644 77889999999999999999999999866554 34566777778
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCH
Q 043204 375 KGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQ 454 (504)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (504)
..+...++++.+...+.+..+. .+.+...+..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 8899999999999999998875 23456788889999999999999999999999864 44567889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHH
Q 043204 455 YEAVMWLEEMISQAKLPDISV 475 (504)
Q Consensus 455 ~~a~~~~~~~~~~~~~p~~~~ 475 (504)
++|++.|++..+. .|+...
T Consensus 158 ~~A~~~~~~al~~--~p~~a~ 176 (184)
T 3vtx_A 158 DEAVKYFKKALEK--EEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHT--THHHHH
T ss_pred HHHHHHHHHHHhC--CccCHH
Confidence 9999999999854 565543
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=3.9e-11 Score=109.50 Aligned_cols=239 Identities=12% Similarity=-0.029 Sum_probs=141.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCC-CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-Cc-CHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQG-CYPD----RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS-GE-DIVIYR 229 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~~~ 229 (504)
....+...|++++|...|++..+.- -.++ ..++..+...|...|+++.|...+++........+. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4445677888999998888876531 0122 346777888888899999999998888654443332 11 255778
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
.+..+|...|++++|.+.+++..+......+. .....++..+...+...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQND-------------------------------RFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHC
Confidence 88889999999999999998876531100000 00224566666777777
Q ss_pred CChhHHHHHHHHHHH-----CCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHhcC
Q 043204 310 GRIVEGDKVLDEMRT-----KGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTF---VPTVRVYNILLKGLCDAG 381 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 381 (504)
|++++|...+++..+ .... ...++..+...|.+.|++++|...+++++..... +.....+..+...|...+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 888888888777765 3222 3455666666677777777777777664443221 111223333444444455
Q ss_pred C---hHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 382 N---SAVAVMYLKKMSKQVGCVA-NGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 382 ~---~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
+ +.+|+..++.. +..| ....+..+...|...|++++|.+.|++..+
T Consensus 315 ~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 44444444442 1111 122344555555566666666655555543
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=1.2e-10 Score=102.78 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=127.1
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 043204 168 DLALHVFQEMDFQGCYPDRESYHILMKGLC-------NDRRL-------NEATHLLYSMFWRISQKGSGEDIVIYRTLLF 233 (504)
Q Consensus 168 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (504)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++. ...-.+.+...|..++.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA----l~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA----ISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH----HTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH----HHHhCcccHHHHHHHHH
Confidence 56666666666542 224555655555544 23554 6777777766 33111224556667777
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCh
Q 043204 234 ALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLA-SYSAMAIDLYNEGRI 312 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~ 312 (504)
.+.+.|++++|.++|+++++.. |. +.. .|..+...+.+.|++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~--p~-----------------------------------~~~~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIE--DI-----------------------------------DPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSS--SS-----------------------------------CTHHHHHHHHHHHHHHHCH
T ss_pred HHHhcCCHHHHHHHHHHHHhcc--cc-----------------------------------CccHHHHHHHHHHHHhcCH
Confidence 7777777777777777766531 11 122 555566666666777
Q ss_pred hHHHHHHHHHHHCCCCcchhhHHHHHHHH-hcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 043204 313 VEGDKVLDEMRTKGFWPSLVMYEAKLAAL-FKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLK 391 (504)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 391 (504)
++|..+|++..+.+. ++...|....... ...|+.++|..+|++++... +.+...|..++..+.+.|++++|..+|+
T Consensus 151 ~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 151 KSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777666532 2333333322221 12567777777777655543 2345566666666667777777777777
Q ss_pred HHHHhcCCCCc--hhhHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 043204 392 KMSKQVGCVAN--GETYGILVDGLCRDGRFLEASRVLEEMLIR 432 (504)
Q Consensus 392 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 432 (504)
+......+.|+ ...|..++..+.+.|+.+.|..+++++.+.
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76654123432 345666666666677777777777776664
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=4.1e-12 Score=112.69 Aligned_cols=240 Identities=13% Similarity=0.089 Sum_probs=135.8
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcC------C-CC
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKY-----PNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGD------S-CE 77 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 77 (504)
++..+...+...|++++|+..|+++.+.. +.......++..+...+...|++++|...+++..+. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 34556677777777777777777777630 011124456677777777777777777777776643 1 12
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC------C-CCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC------
Q 043204 78 CKDSVFATAIRTYARAGQLNEAVSLFKNLSQF------N-CVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG------ 144 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 144 (504)
....++..+...+...|++++|...|++..+. + .+....++..+...+...|++++|...|++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23445677777777777777777777766543 1 1223445666777777777777777777776542
Q ss_pred CCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC-------CCCCCHhhH-------HHHHHHHHhcCCHHHHHHHHH
Q 043204 145 WEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ-------GCYPDRESY-------HILMKGLCNDRRLNEATHLLY 210 (504)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~ 210 (504)
...+....++..+..+|...|++++|.+.|+++.+. ...+..... ..+...+...+.+.++...+.
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 112223455666777777777777777777777763 111111111 111122223334444444444
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 211 SMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.. ... ...+..++..+..+|.+.|++++|.+.|++..+.
T Consensus 269 ~~----~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 269 AC----KVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hc----CCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33 111 1223556777777888888888888888777653
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.8e-10 Score=104.98 Aligned_cols=278 Identities=15% Similarity=0.017 Sum_probs=152.3
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCccH----HHHHHHHHHHHhcchHHHHHHHHHHhhcCC---C-CcchHHHHHHHHH
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFNCVNWT----QSFNTLLKEMVKESKLEAAHILFLRSCYGW---E-VKSRIQSLNLLMD 159 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l~~ 159 (504)
..+...|++++|...+++........+. .+++.+...+...|++++|...+++..... + ......++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444556666666665554443221111 134445555556666666666666544211 1 0111233556677
Q ss_pred HHhhcCCHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 043204 160 VLCQCRRSDLALHVFQEMDFQ----GCY--P-DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLL 232 (504)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (504)
.+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++........+......++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 788888888888888776542 211 2 234556677788889999999999988854333333222345677888
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 043204 233 FALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRI 312 (504)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 312 (504)
..+...|++++|...+++.......+...... ...........+...|++
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDW------------------------------ISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH------------------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhH------------------------------HHHHHHHHHHHHHHCCCH
Confidence 88999999999999999887642111100000 000001222335567888
Q ss_pred hHHHHHHHHHHHCCCCcc---hhhHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCCCccH-HHHHHHHHHHHhcCChHH
Q 043204 313 VEGDKVLDEMRTKGFWPS---LVMYEAKLAALFKDGMVDEALEVIEEEMVK---GTFVPTV-RVYNILLKGLCDAGNSAV 385 (504)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~~~~~~ 385 (504)
++|...+++.......+. ...+..+...+...|++++|...+++.... .+..++. ..+..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 888888777655332111 123445556666667777776666653221 1111111 133344445555555555
Q ss_pred HHHHHHHHHH
Q 043204 386 AVMYLKKMSK 395 (504)
Q Consensus 386 a~~~~~~~~~ 395 (504)
|...+++...
T Consensus 312 A~~~l~~al~ 321 (373)
T 1hz4_A 312 AQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.5e-11 Score=115.49 Aligned_cols=213 Identities=12% Similarity=0.005 Sum_probs=163.8
Q ss_pred hhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCh-hHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHH
Q 043204 61 ITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQL-NEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFL 139 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 139 (504)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+.+. .+..+|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556667777666554 55777888888899999999 999999998887653 346788889999999999999999999
Q ss_pred HhhcCCCCcchHHHHHHHHHHHhhc---------CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc--------CCH
Q 043204 140 RSCYGWEVKSRIQSLNLLMDVLCQC---------RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCND--------RRL 202 (504)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~ 202 (504)
+.... .|+...+..+...+... |++++|++.|++..+... -+...|..+..+|... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88754 35567888888888888 999999999998887642 3577888888888888 889
Q ss_pred HHHHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHH
Q 043204 203 NEATHLLYSMFWRISQKGS--GEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGA 280 (504)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 280 (504)
++|...|++. ..... ..+...|..+..+|...|++++|.+.|++..+....
T Consensus 238 ~~A~~~~~~a----l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----------------------- 290 (474)
T 4abn_A 238 QQALSAYAQA----EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA----------------------- 290 (474)
T ss_dssp HHHHHHHHHH----HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------------
T ss_pred HHHHHHHHHH----HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------
Confidence 9999999888 33322 036788888889999999999999999988876321
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043204 281 KSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLD 320 (504)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (504)
+...+..+...+...|++++|+..+.
T Consensus 291 --------------~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 291 --------------WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666677777766543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=5e-10 Score=102.05 Aligned_cols=281 Identities=15% Similarity=0.001 Sum_probs=166.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc-CHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRE----SYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE-DIVIYR 229 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 229 (504)
......+...|++++|...+++........+.. +++.+...+...|++++|...+++........+... ...++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445667888999999888877653222222 455666777889999999999988855434433211 123456
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIP-SLASYSAMAIDLYN 308 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~ 308 (504)
.+...+...|++++|...+++..+........ ..| ....+..+...+..
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------------------------~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLE------------------------------QLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------------------TSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------------------------cCcHHHHHHHHHHHHHHH
Confidence 77788899999999999999887632100000 001 12334445556666
Q ss_pred cCChhHHHHHHHHHHHCCCC--c--chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCcc-HHHHH----HHHHHHHh
Q 043204 309 EGRIVEGDKVLDEMRTKGFW--P--SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPT-VRVYN----ILLKGLCD 379 (504)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~ 379 (504)
.|++++|...+++....... + ...++..+...+...|++++|...+++.......... ..... ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 67777777777776653221 1 1234556666777777777777777764432111111 11111 22234667
Q ss_pred cCChHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhhcCcHHHHHHHHHHHHhc----CcCCCc-chHHHHHHHHHcc
Q 043204 380 AGNSAVAVMYLKKMSKQVGCVAN---GETYGILVDGLCRDGRFLEASRVLEEMLIR----SYWPCV-ETYNVLIRGLCSI 451 (504)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~ 451 (504)
.|++++|...++..... ...+. ...+..+...+...|++++|...+++.... |..++. ..+..+..++...
T Consensus 228 ~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp TTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 77777777777776543 11111 123456667777778888877777776543 111112 2445556667777
Q ss_pred CCHHHHHHHHHHHHH
Q 043204 452 GKQYEAVMWLEEMIS 466 (504)
Q Consensus 452 g~~~~a~~~~~~~~~ 466 (504)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888887777777653
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=6.6e-12 Score=101.85 Aligned_cols=162 Identities=13% Similarity=0.007 Sum_probs=93.1
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555566666666665555544 3444555555555666666666666666555443 223445555555666
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEAT 206 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 206 (504)
..|++++|...++++.... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666555432 2234455566666666666666666666665543 224556666666666777777777
Q ss_pred HHHHHHH
Q 043204 207 HLLYSMF 213 (504)
Q Consensus 207 ~~~~~~~ 213 (504)
..++++.
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766663
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.8e-11 Score=119.40 Aligned_cols=165 Identities=11% Similarity=0.067 Sum_probs=142.7
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
..+++.|..+|.+.|++++|++.|+++.+..|+ +..+|..+..+|.+.|++++|++.|++..+.. +.+..+|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 456788899999999999999999999999887 78899999999999999999999999999886 66778899999
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCH
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRS 167 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 167 (504)
.++...|++++|++.|++..+.+. .+..+|..+...|.+.|++++|+..|++..+..+ -+...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHhhhhhHHHhcccH
Confidence 999999999999999999887663 3477889999999999999999999999876532 2456788899999999999
Q ss_pred HHHHHHHHHhhh
Q 043204 168 DLALHVFQEMDF 179 (504)
Q Consensus 168 ~~a~~~~~~~~~ 179 (504)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877654
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=1.3e-11 Score=107.61 Aligned_cols=236 Identities=13% Similarity=0.061 Sum_probs=161.0
Q ss_pred HHhcCChhHHHHHHHHHHhcC-----CCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcC------CC-CccHHHHHH
Q 043204 18 IKKQKSPLTALKIFKEAKEKY-----PNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGD------SC-ECKDSVFAT 85 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 85 (504)
....|++++|+..|+++.+.. ++......++..+...+...|++++|...+++..+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345678888888888887641 111224667889999999999999999999998754 21 234457899
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhC------C-CCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC------CCCcchHH
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQF------N-CVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG------WEVKSRIQ 152 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~ 152 (504)
+...+...|++++|.+.|++..+. . .+....++..+...+...|++++|...+++.... ...+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999987754 1 2334668889999999999999999999988653 22233467
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhC-------CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--CC
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQ-------GCYPDR-ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKG--SG 222 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 222 (504)
++..+..+|...|++++|.++|++..+. ...+.. ..+..+...+...+....+.. +..+.......+ ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCH
Confidence 7888999999999999999999988753 122232 233333333333232222222 222211101111 12
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 223 EDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 223 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
....++..+..+|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23557888999999999999999999988753
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.7e-10 Score=93.44 Aligned_cols=165 Identities=17% Similarity=0.112 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 043204 81 SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV 160 (504)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (504)
..+..+...+...|++++|...|+.+.+... .+..++..+...+...|++++|...++++.... +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 4456666777777777777777777665542 345666777777777777777777777766542 2244566667777
Q ss_pred HhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc
Q 043204 161 LCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGK 240 (504)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (504)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++ .... +.+...+..+..++...|+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA----LGLR-PNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH----HhcC-ccchHHHHHHHHHHHHcCC
Confidence 777777777777777776653 235566666777777777777777777776 3332 3356677777777777777
Q ss_pred hhHHHHHHHHHHHc
Q 043204 241 IQDAMQILEKILRK 254 (504)
Q Consensus 241 ~~~a~~~~~~~~~~ 254 (504)
+++|.+.+++..+.
T Consensus 160 ~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 160 HEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777664
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=3.2e-10 Score=95.31 Aligned_cols=201 Identities=15% Similarity=0.021 Sum_probs=91.6
Q ss_pred hccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCC
Q 043204 267 DLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGM 346 (504)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (504)
....+...|++++|...|+..++....++...+..+..++...|++++|+..|++..+..+. +...+..+...|...|+
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKN 91 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHccc
Confidence 34444455555555555555555443234444444444455555555555555555544322 34444555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCccH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhhcCc
Q 043204 347 VDEALEVIEEEMVKGTFVPTV-----RVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN---GETYGILVDGLCRDGR 418 (504)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 418 (504)
+++|...+++++...+-.+.. ..|..+...+...|++++|++.|++..+ ..|+ ...+..+..+|...|
T Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~~~~- 167 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVLFYNNG- 167 (228)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHHHHH-
Confidence 555555555544332111111 2344444445555555555555555543 2333 233444444443222
Q ss_pred HHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043204 419 FLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVA 481 (504)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 481 (504)
..+++++...+ ..+...|.... ....+.+++|+..+++..+. .|+......++.
T Consensus 168 ----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 168 ----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp ----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 22233333321 11122222211 12234458888888888854 466554444443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=8.4e-11 Score=114.80 Aligned_cols=171 Identities=10% Similarity=0.050 Sum_probs=146.9
Q ss_pred CCCCcc-hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHH
Q 043204 39 PNYRHN-GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQS 117 (504)
Q Consensus 39 p~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (504)
|+..|+ ..+|+.|..++.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.+. .+..+
T Consensus 2 pgs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a 79 (723)
T 4gyw_A 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADA 79 (723)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 343444 6789999999999999999999999999886 66778899999999999999999999999988763 34789
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 043204 118 FNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLC 197 (504)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 197 (504)
|..+...+...|++++|++.|++..+.. +-+...|+.+..+|...|++++|++.|++..+... -+...+..+..++.
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHH
Confidence 9999999999999999999999988653 22467889999999999999999999999988642 25788999999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043204 198 NDRRLNEATHLLYSMFW 214 (504)
Q Consensus 198 ~~~~~~~a~~~~~~~~~ 214 (504)
..|++++|.+.++++.+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999988754
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=2.8e-10 Score=95.71 Aligned_cols=208 Identities=9% Similarity=-0.040 Sum_probs=156.0
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
++..+......+...|++++|+..|+++.+..| .++...+..+..++...|++++|.+.|++..+.. +.+..++..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 345667778889999999999999999999865 1377777779999999999999999999999887 6677889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccH-------HHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc--hHHHHHHH
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWT-------QSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKS--RIQSLNLL 157 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 157 (504)
..++...|++++|+..|++..+..+. +. .+|..+...+...|++++|...|++..... +. +...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHH
Confidence 99999999999999999998876533 23 457888888999999999999999998652 22 35667777
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 043204 158 MDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLF 233 (504)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (504)
..+|...| ...++++...+ ..+...|.... ....+.+++|...+++. .+.... +..+...+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a----~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEA----VTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHH----HHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHH----hhcCCC-CHHHHHHHHH
Confidence 77776554 34455555543 22344444443 34556789999999998 444332 4444444433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=5.3e-11 Score=103.77 Aligned_cols=206 Identities=14% Similarity=0.055 Sum_probs=134.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----C
Q 043204 295 SLASYSAMAIDLYNEGRIVEGDKVLDEMRTK------GF-WPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKG-----T 362 (504)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~ 362 (504)
....+..+...+...|++++|...+++..+. +- +....++..+...|...|++++|...+++++... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777888888889999999999888764 22 2245678888889999999999999998855441 1
Q ss_pred -CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-----CCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHHhc---
Q 043204 363 -FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQV-----GCVA-NGETYGILVDGLCRDGRFLEASRVLEEMLIR--- 432 (504)
Q Consensus 363 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 432 (504)
.+....++..+...|...|++++|...+++..+.. +..| ...++..+..+|...|++++|.+.++++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12345678888888999999999999998887641 1122 3457788889999999999999999988764
Q ss_pred ----CcCCCc-chHHHHHHHHHccCCH------HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 043204 433 ----SYWPCV-ETYNVLIRGLCSIGKQ------YEAVMWLEEMISQAKLPD-ISVWSSLVASVCCNTADLNVCRKTLEQL 500 (504)
Q Consensus 433 ----~~~~~~-~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 500 (504)
...+.. ..|..+...+...+.. ..+...++... ...|+ ...+..+...|...|+ +++|..++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a 278 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK--VDSPTVNTTLRSLGALYRRQGK-LEAAHTLEDCA 278 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC--CCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 112332 3333333333332222 22222222221 11233 2455666666666655 99999999887
Q ss_pred hcC
Q 043204 501 SSC 503 (504)
Q Consensus 501 ~~~ 503 (504)
++.
T Consensus 279 l~~ 281 (283)
T 3edt_B 279 SRN 281 (283)
T ss_dssp HTT
T ss_pred HHh
Confidence 653
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.23 E-value=2.7e-08 Score=93.25 Aligned_cols=379 Identities=9% Similarity=-0.070 Sum_probs=197.4
Q ss_pred hcC-ChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC-hh
Q 043204 20 KQK-SPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ-LN 97 (504)
Q Consensus 20 ~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 97 (504)
+.| +.+.|..+|+++....|. |+++.+..+|++.... .|+...|...+....+.++ .+
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~------------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS------------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----
T ss_pred HcCcchHHHHHHHHHHHHHCCC------------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHH
Confidence 356 488888888888887653 7799999999998885 4688888888887777663 45
Q ss_pred HHHHHHHHhhhC-CC-CccHHHHHHHHHHHH----hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHH
Q 043204 98 EAVSLFKNLSQF-NC-VNWTQSFNTLLKEMV----KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLAL 171 (504)
Q Consensus 98 ~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 171 (504)
....+|+..... |. ..+...|...+..+. ..++.+.+..+|++....+ ...-...|...... ....+...+.
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~f-E~~~~~~~~~ 143 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENF-ELELNKITGK 143 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHH-HHHHCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHH-HHHhccccHH
Confidence 677788776642 32 234566766666543 3567888999999887632 11111222222111 1111111122
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC-------chhHH
Q 043204 172 HVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQG-------KIQDA 244 (504)
Q Consensus 172 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a 244 (504)
+++.+.. +.+..|..+++.+...... .+...|...+..-...+ ..+.+
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~----~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv 198 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRG----WSVKNAARLIDLEMENGMKLGGRPHESRM 198 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHT----CSHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHhcCCccCcchhhHHHH
Confidence 2211110 1122222222222110000 01122222222211110 01223
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043204 245 MQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (504)
..+|++++... |.........+..+...|+.+.|..++.+.+.. |....... .|......++. ++.+.+
T Consensus 199 ~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 199 HFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHH
Confidence 34444444432 222222222233334444555555555555544 22211111 11111111111 111111
Q ss_pred C---------C---CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh-cCChHHHHHHHH
Q 043204 325 K---------G---FWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD-AGNSAVAVMYLK 391 (504)
Q Consensus 325 ~---------~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~ 391 (504)
. + .......|...+....+.+..+.|..+|+.+ ... ..+...|......-.. .++.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 0 0012245666666666778899999999985 322 2344444432222222 346999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 392 KMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 392 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
...+.++- ++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 345 ~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99886332 33456667777788899999999999873 2466777787776778999999998888874
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=2.8e-10 Score=91.19 Aligned_cols=162 Identities=10% Similarity=0.035 Sum_probs=91.0
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+...|++++|+..|+++.+..|+ +...+..+..++...|++++|...|++..+.. + +...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHH
Confidence 3455666777788888888888887777666 67777777788888888888888888777654 2 44333222211
Q ss_pred -HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHH
Q 043204 90 -YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSD 168 (504)
Q Consensus 90 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (504)
+...+....|+..|+...+.++ .+...+..+...+...|++++|...|+++....+...+...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1122223335555555554431 22444555555555555555555555555433221122334445555555555555
Q ss_pred HHHHHHHHh
Q 043204 169 LALHVFQEM 177 (504)
Q Consensus 169 ~a~~~~~~~ 177 (504)
+|...|++.
T Consensus 162 ~A~~~y~~a 170 (176)
T 2r5s_A 162 AIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555443
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=2.3e-10 Score=112.29 Aligned_cols=173 Identities=9% Similarity=0.013 Sum_probs=111.9
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 19 KKQKSPLTALKIFKEAK--------EKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 19 ~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
...|++++|++.|+++. +..|+ +...+..+..++...|++++|.+.|++..+.. +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE---SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc---chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 56677777777777777 55454 56667777777777777777777777777665 55566677777777
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
...|++++|++.|++..+.+. .+...+..+...+.+.|++++ +..|++..... +.+...|..+..++.+.|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766552 235566677777777777777 77777766432 12345666677777777777777
Q ss_pred HHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCC
Q 043204 171 LHVFQEMDFQGCYPD-RESYHILMKGLCNDRR 201 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 201 (504)
.+.|++..+. .|+ ...+..+..++...++
T Consensus 554 ~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777777654 233 3455555555544443
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.21 E-value=4.9e-10 Score=92.48 Aligned_cols=170 Identities=8% Similarity=0.007 Sum_probs=126.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHH----------------HHHHHhccCChhHHHHHHHHhhcCCC
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYAS----------------MIGILSESNRITEMKEVIDQMKGDSC 76 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 76 (504)
.....+...|++++|+..|+++.+..|+ +...|.. +..++.+.|++++|...|++..+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3456677899999999999999998776 6667777 8888899999999999999988876
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcch--HHHHHHHHHHhhcCCCCcchHHHH
Q 043204 77 ECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESK--LEAAHILFLRSCYGWEVKSRIQSL 154 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 154 (504)
|.+...+..+..++...|++++|+..|++..+.++ .+..++..+...|...|+ ...+...++.... ..|....+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHH
Confidence 66778888899999999999999999999888763 346677788777766554 3455556655532 23333344
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHIL 192 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 192 (504)
..+..++...|++++|...|++..+. .|+......+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 44556667788899999999988875 5665444433
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=8.2e-10 Score=96.57 Aligned_cols=158 Identities=8% Similarity=-0.068 Sum_probs=71.7
Q ss_pred HhccCChhHHHHHHHHhhcC----CCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC----CCc-cHHHHHHHHHH
Q 043204 55 LSESNRITEMKEVIDQMKGD----SCECK-DSVFATAIRTYARAGQLNEAVSLFKNLSQFN----CVN-WTQSFNTLLKE 124 (504)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~ 124 (504)
|...|++++|.+.|++..+. +-+++ ..+|+.+..+|...|++++|+..|++..+.. -.. -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555544332 21111 2345555555555555555555555443211 000 12344555555
Q ss_pred HHhc-chHHHHHHHHHHhhcCCC---Ccc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHh------hHHHHH
Q 043204 125 MVKE-SKLEAAHILFLRSCYGWE---VKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRE------SYHILM 193 (504)
Q Consensus 125 ~~~~-~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~ 193 (504)
|... |++++|+..|++...... ..+ ...+++.+...+.+.|++++|+..|++..+........ .|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 5553 555555555555442110 000 02344555555555555555555555555432211110 334444
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 043204 194 KGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~~ 212 (504)
.++...|++++|...|++.
T Consensus 207 ~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555554
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=6.4e-10 Score=95.65 Aligned_cols=210 Identities=8% Similarity=-0.114 Sum_probs=114.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC--CccHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC--ECKDSVFATAIRT 89 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 89 (504)
-.+...+.+.|++++|+..|+++.+..|+......++..+..++.+.|++++|...|++..+... +....++..+..+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 34456666777777777777777777665222255666677777777777777777777776531 1223445666666
Q ss_pred HHh--------cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 043204 90 YAR--------AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVL 161 (504)
Q Consensus 90 ~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (504)
+.. .|++++|+..|+++.+..+.. ......+.......+. ....+..+...|
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~a~~~~~~~~~~-------------------~~~~~~~la~~~ 158 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELVDDATQKIRELRAK-------------------LARKQYEAARLY 158 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH
Confidence 666 677777777777766543221 1111111000000000 001124456667
Q ss_pred hhcCCHHHHHHHHHHhhhCCCCC--CHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhhCCCC-c-CHHH
Q 043204 162 CQCRRSDLALHVFQEMDFQGCYP--DRESYHILMKGLCND----------RRLNEATHLLYSMFWRISQKGSG-E-DIVI 227 (504)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~-~-~~~~ 227 (504)
.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+++. ..... + -...
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~a 234 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL----QIFPDSPLLRTA 234 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH----HHCTTCTHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH----HHCCCChHHHHH
Confidence 77777777777777776542111 123455555666544 67777777777763 22211 1 1345
Q ss_pred HHHHHHHHHhcCchhHHH
Q 043204 228 YRTLLFALCDQGKIQDAM 245 (504)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~ 245 (504)
...+...+.+.++++++.
T Consensus 235 ~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 235 EELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 555555555555555443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=6.3e-08 Score=82.84 Aligned_cols=180 Identities=7% Similarity=-0.044 Sum_probs=127.6
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCchhHHHHHH
Q 043204 170 ALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS-GEDIVIYRTLLFALCDQGKIQDAMQIL 248 (504)
Q Consensus 170 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (504)
|+..|++..+.+ .++..++..+..++...|++++|++++.+. ...+. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEG----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHH----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 678888887665 456666678888899999999999999877 55544 235678888899999999999999999
Q ss_pred HHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHh----cCChhHHHHHH
Q 043204 249 EKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIP-----SLASYSAMAIDLYN----EGRIVEGDKVL 319 (504)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~----~~~~~~a~~~~ 319 (504)
+.|.+.. | +..+...+..++.. .++..+|..+|
T Consensus 160 ~~~~~~~--------------------------------------~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f 201 (310)
T 3mv2_B 160 DNYTNAI--------------------------------------EDTVSGDNEMILNLAESYIKFATNKETATSNFYYY 201 (310)
T ss_dssp HHHHHHS--------------------------------------CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHH
T ss_pred HHHHhcC--------------------------------------ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 9997752 2 24444555555333 24899999999
Q ss_pred HHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcC----C----CCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 043204 320 DEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKG----T----FVPTVRVYNILLKGLCDAGNSAVAVMYLK 391 (504)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 391 (504)
+++.+.. |+..+...++.++.+.|++++|.+.++.+.... . -+.+..++..+|......|+ +|.++++
T Consensus 202 ~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~ 277 (310)
T 3mv2_B 202 EELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTN 277 (310)
T ss_dssp HHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHH
T ss_pred HHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHH
Confidence 9987653 443334455558888899999999988633221 0 13356666566655666676 7888888
Q ss_pred HHHHh
Q 043204 392 KMSKQ 396 (504)
Q Consensus 392 ~~~~~ 396 (504)
++.+.
T Consensus 278 qL~~~ 282 (310)
T 3mv2_B 278 QLVKL 282 (310)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=4.1e-09 Score=92.09 Aligned_cols=238 Identities=16% Similarity=0.100 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHcCCCCCcchhhhhhccccCCC-C-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 043204 242 QDAMQILEKILRKGLKAPKSRRHRIDLCPCNDG-E-DIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVL 319 (504)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (504)
.+|.+++.+..+.- + ++..++.+ +... + +++.|...+... ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~~-~-~~~~~~~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-V-PSSGFMKL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHHS-S-CCCTHHHH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHHh-C-cCCCcchh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 35677777776652 2 21112122 1221 2 477887777665 34567789999999999
Q ss_pred HHHHHC----CCCc-chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCcc----HHHHHHHHHHHHhc-CChHHHHHH
Q 043204 320 DEMRTK----GFWP-SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPT----VRVYNILLKGLCDA-GNSAVAVMY 389 (504)
Q Consensus 320 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~-~~~~~a~~~ 389 (504)
.+..+. |-.+ ...+|+.+..+|.+.|++++|+..+++++.-..-..+ ..++..+...|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 887653 3222 2568889999999999999999999986543211111 35788888999996 999999999
Q ss_pred HHHHHHhcCCCCc----hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcc------hHHHHHHHHHccCCHHHHHH
Q 043204 390 LKKMSKQVGCVAN----GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVE------TYNVLIRGLCSIGKQYEAVM 459 (504)
Q Consensus 390 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~ 459 (504)
|++..+...-..+ ..++..+...|.+.|++++|...|++..+........ .|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998764111111 3467888999999999999999999999864222211 46777788999999999999
Q ss_pred HHHHHHHcCCCCCHH------HHHHHHHHHhc-CCCchhHHHHHHHHhhc
Q 043204 460 WLEEMISQAKLPDIS------VWSSLVASVCC-NTADLNVCRKTLEQLSS 502 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~------~~~~ll~~~~~-~~~~~~~a~~~~~~~~~ 502 (504)
.+++..+ +.|+.. .+..++.++.. ..+++++|...++++.+
T Consensus 221 ~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9999883 445432 24445555432 33458888888876543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=4.8e-09 Score=90.14 Aligned_cols=189 Identities=9% Similarity=-0.071 Sum_probs=130.4
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC--CccHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK---DSVFATAIRTYARAGQLNEAVSLFKNLSQFNC--VNWTQSF 118 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 118 (504)
+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|+..|+...+..+ +....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55667777788888888999999998888765 333 56778888888888888888888888877532 1224566
Q ss_pred HHHHHHHHh--------cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 043204 119 NTLLKEMVK--------ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYH 190 (504)
Q Consensus 119 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 190 (504)
..+...+.. .|++++|...|+++....+..+. ....+.. +..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHH--------------HHHHHHH----HHHHHH
Confidence 677777777 88888888888887654322221 1111111 1111100 011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc----------CchhHHHHHHHHHHHcC
Q 043204 191 ILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ----------GKIQDAMQILEKILRKG 255 (504)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 255 (504)
.+...|.+.|++++|...|+++.... .........+..+..+|... |++++|...|+++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 67788999999999999999984321 11222567888888888866 99999999999999874
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=1.4e-09 Score=94.70 Aligned_cols=166 Identities=9% Similarity=-0.046 Sum_probs=127.3
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++.+......+ .........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHHHH
Confidence 66677788888889999999999999988876 6677788888899999999999999999887665422 222333333
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP-DRESYHILMKGLCNDRRL 202 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 202 (504)
.+...++.+.|...+++..... +.+...+..+...+...|++++|.+.|+++.+..... +...+..+...+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4667777888888888877653 2345677888889999999999999999888764221 256788888889999999
Q ss_pred HHHHHHHHHHH
Q 043204 203 NEATHLLYSMF 213 (504)
Q Consensus 203 ~~a~~~~~~~~ 213 (504)
++|...|++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99988888764
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.4e-09 Score=82.61 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=72.8
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+...|++++|+.+|+++.+..|. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 445566666667777777777776666544 55566666666666666666666666666554 34455555666666
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHh
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRS 141 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (504)
...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 666666666666666554332 12334444444444445555444444444
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=2.8e-09 Score=89.21 Aligned_cols=179 Identities=12% Similarity=0.018 Sum_probs=116.6
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH---HHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKD---SVFATAI 87 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~ 87 (504)
+-.+...+.+.|++++|+..|+++.+..|.-.....++..+..++.+.|++++|+..|+++.+.. |.+. ..+..+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHH
Confidence 34456778899999999999999999877633334678888999999999999999999998765 2222 2444444
Q ss_pred HHHHh------------------cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc
Q 043204 88 RTYAR------------------AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKS 149 (504)
Q Consensus 88 ~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (504)
.++.. .|++++|...|+.+.+..+.. ..+...... .+... ..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~-~~a~~a~~~----l~~~~------~~~-------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS-QYTTDATKR----LVFLK------DRL-------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC-TTHHHHHHH----HHHHH------HHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC-hhHHHHHHH----HHHHH------HHH--------
Confidence 55543 355666666666666543221 111111100 00000 000
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 150 RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR----ESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
......+...|.+.|++++|...|+++.+. .|+. ..+..+..++.+.|++++|.+.++.+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 001134566788888888888888888775 2332 45777788888888888888888877
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=2.4e-08 Score=85.42 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=67.2
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 99 AVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.....+..-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555544433 2223333455555555555555555555543221111234444555555555555555555555555
Q ss_pred hCCCCC-----CHhhHHHHHHHHH--hcC--CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 179 FQGCYP-----DRESYHILMKGLC--NDR--RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 179 ~~~~~p-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
+. .| +..+...|+.++. ..| ++++|..+|+++ .+. .|+..+...++.++.+.|++++|.+.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El----~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL----SQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH----HTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH----HHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 43 33 2334444443322 122 555555555555 222 2232222223335555555555555555
Q ss_pred HHHH
Q 043204 250 KILR 253 (504)
Q Consensus 250 ~~~~ 253 (504)
.+.+
T Consensus 236 ~l~~ 239 (310)
T 3mv2_B 236 LLLS 239 (310)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 4443
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=4.1e-10 Score=87.37 Aligned_cols=145 Identities=9% Similarity=-0.010 Sum_probs=85.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
|..++...|++++|+..++......|. +...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344455666777777777777665443 45556666777777777777777777777665 55666677777777777
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHH-HHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 94 GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHIL-FLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
|++++|+..|+...+.++ .+..++..+...|.+.|+.++|... +++.....+ -+..+|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--TCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhC
Confidence 777777777777666542 2345566666666666666554443 354443211 12334444444444444
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1.2e-08 Score=77.28 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 043204 334 YEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGL 413 (504)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 413 (504)
+..+...+...|++++|..+++++.... +.+...+..+...+...|++++|...++++.+. . +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 4455555666666666666666533332 234445555666666666666666666666554 1 22344556666666
Q ss_pred hhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 414 CRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666543 23445566666666667777777777666664
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.8e-08 Score=83.26 Aligned_cols=174 Identities=10% Similarity=0.009 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC----ChhHHH
Q 043204 25 LTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG----QLNEAV 100 (504)
Q Consensus 25 ~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 100 (504)
.+|++.|++..+. + +..++..+...+...+++++|.++|++..+.| ++..+..+...|.. + ++++|.
T Consensus 3 ~eA~~~~~~aa~~--g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--G---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHHT--T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHHC--C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 4577888888876 5 78888888888888899999999999888765 55667777777777 6 888888
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHh----cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh----cCCHHHHHH
Q 043204 101 SLFKNLSQFNCVNWTQSFNTLLKEMVK----ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ----CRRSDLALH 172 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 172 (504)
+.|+...+.+ +...+..|...|.. .+++++|..+|++.........+...+..|...|.. .+++++|..
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 8888887765 34556677777766 678888888888887542211125566777777777 678888888
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHH
Q 043204 173 VFQEMDFQGCYPDRESYHILMKGLCND-R-----RLNEATHLLYSM 212 (504)
Q Consensus 173 ~~~~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~ 212 (504)
.|++..+. ..+...+..|...|... | ++++|..+|++.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 88888765 23445566666666543 2 788888888777
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=4.9e-09 Score=83.89 Aligned_cols=163 Identities=11% Similarity=-0.005 Sum_probs=111.7
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
...+..+...+.+.|++++|...|++..+.. |.+...+..+..++...|++++|+..|+...+... +...+..+...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHH
Confidence 3456677778888999999999999888765 56677788888899999999999999988876553 33322222111
Q ss_pred -HHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCH
Q 043204 125 -MVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP-DRESYHILMKGLCNDRRL 202 (504)
Q Consensus 125 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 202 (504)
+...++...|...+++..... +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 112222334566777666432 2235566777777888888888888888877764322 245677777777888888
Q ss_pred HHHHHHHHHH
Q 043204 203 NEATHLLYSM 212 (504)
Q Consensus 203 ~~a~~~~~~~ 212 (504)
++|...|++.
T Consensus 161 ~~A~~~y~~a 170 (176)
T 2r5s_A 161 NAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 8888777766
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.03 E-value=1.7e-08 Score=83.13 Aligned_cols=171 Identities=12% Similarity=-0.061 Sum_probs=121.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHH----------------HHHHHhcCCCHHHHHHHHHHHHhcCCCCc
Q 043204 302 MAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEA----------------KLAALFKDGMVDEALEVIEEEMVKGTFVP 365 (504)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (504)
....+...|++++|+..|++..+..+. +...+.. +..+|.+.|++++|+..|++++... +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--PN 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC
Confidence 344566678888888888887775322 3445555 8889999999999999999977665 44
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCc--HHHHHHHHHHHHhcCcCCCcchHHH
Q 043204 366 TVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGR--FLEASRVLEEMLIRSYWPCVETYNV 443 (504)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ 443 (504)
+...+..+..++...|++++|...|++..+. -+.+...+..+..+|...|+ .+.+...++.... ..|....+..
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~ 162 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYR 162 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHH
Confidence 6778889999999999999999999999875 23356678888888766554 3445555555542 1222333444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043204 444 LIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVA 481 (504)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 481 (504)
...++...|++++|+..|++.. .+.|+......+.+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHHHH
Confidence 5566777899999999999999 45788765555443
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=1.2e-07 Score=82.08 Aligned_cols=226 Identities=8% Similarity=-0.033 Sum_probs=176.2
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccC--ChhHHHHHHHHhhcCCCCccHHHHHHHHHHH--
Q 043204 16 QIIKKQK-SPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESN--RITEMKEVIDQMKGDSCECKDSVFATAIRTY-- 90 (504)
Q Consensus 16 ~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 90 (504)
.+..+.| ..++|+.+++.++..+|. +..+|+.--.++...+ ++++++++++.+.... +-+..+|+.--.++
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3333445 446899999999999888 8888999999998888 9999999999999876 66667787776666
Q ss_pred --Hhc---CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHH--HHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 91 --ARA---GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLE--AAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 91 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
... +++++++.+++.+.+.+.. +-.+|+.-.-.+.+.|.++ +++..++++.... +-|...|+.-...+.+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 555 7899999999999987744 4677877777778888887 9999999998653 3356677766666666
Q ss_pred cCC------HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHHHhhCC--CCcCHHHHHHHHHH
Q 043204 164 CRR------SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNE-ATHLLYSMFWRISQKG--SGEDIVIYRTLLFA 234 (504)
Q Consensus 164 ~~~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 234 (504)
.+. ++++++.++.+....+. |...|+.+-..+.+.|+... +..+..++ ...+ ...+...+..++.+
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQF----VDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTT----EEGGGTEESCHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHH----HhccCCCCCCHHHHHHHHHH
Confidence 666 88999999988877543 78888888888888777444 54565555 3322 23467888899999
Q ss_pred HHhcCchhHHHHHHHHHHH
Q 043204 235 LCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 235 ~~~~g~~~~a~~~~~~~~~ 253 (504)
|.+.|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 9999999999999999876
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=1.6e-08 Score=88.00 Aligned_cols=180 Identities=13% Similarity=0.038 Sum_probs=139.0
Q ss_pred hhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHH
Q 043204 61 ITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLR 140 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 140 (504)
.+...+.+.... +.+...+..+...+...|++++|...|+...+..+ .+...+..+...+.+.|++++|...+++
T Consensus 102 ~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 102 EEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 334444454443 55667788888999999999999999999988763 3467888999999999999999999998
Q ss_pred hhcCCCCcchHHH-HHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Q 043204 141 SCYGWEVKSRIQS-LNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQK 219 (504)
Q Consensus 141 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 219 (504)
+.... |+... .......+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++ ...
T Consensus 177 ~~~~~---p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~----l~~ 248 (287)
T 3qou_A 177 IPLQD---QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGH----LRX 248 (287)
T ss_dssp SCGGG---CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHH
T ss_pred Cchhh---cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHH----Hhc
Confidence 87542 33322 2233334667788888999999888764 336788889999999999999999999998 444
Q ss_pred CCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 220 GSG-EDIVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 220 ~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
... .+...+..++..+...|+.++|...+++...
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 333 2477899999999999999999999887654
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=3.9e-08 Score=81.20 Aligned_cols=176 Identities=11% Similarity=-0.015 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCC----CHHHHHHHH
Q 043204 279 GAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDG----MVDEALEVI 354 (504)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 354 (504)
+|.+.|+...+.| +...+..+...+...+++++|+..|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777653 56677777777777888888888888888765 56667777777777 5 788888888
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHhh----cCcHHHHHHH
Q 043204 355 EEEMVKGTFVPTVRVYNILLKGLCD----AGNSAVAVMYLKKMSKQVGCV-ANGETYGILVDGLCR----DGRFLEASRV 425 (504)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~ 425 (504)
+++.. .+ +...+..|...|.. .+++++|+++|++..+. +.. .+...+..|...|.. .++.++|.+.
T Consensus 77 ~~A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVE-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHH-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 87443 22 55566667777766 77888888888887754 211 025677777777777 7788888888
Q ss_pred HHHHHhcCcCCCcchHHHHHHHHHcc-C-----CHHHHHHHHHHHHHcC
Q 043204 426 LEEMLIRSYWPCVETYNVLIRGLCSI-G-----KQYEAVMWLEEMISQA 468 (504)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 468 (504)
|++..+. ..+...+..|...|... | ++++|.++|++..+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888775 23555666676666543 2 7888888888877664
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=6.1e-09 Score=102.26 Aligned_cols=173 Identities=9% Similarity=-0.043 Sum_probs=113.7
Q ss_pred hccCChhHHHHHHHHhh--------cCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHh
Q 043204 56 SESNRITEMKEVIDQMK--------GDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK 127 (504)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (504)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|+..|++..+.+ +.+...+..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66777778887777776 443 4455667777777777788888888877777654 2345667777777777
Q ss_pred cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043204 128 ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATH 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 207 (504)
.|++++|...|++.....+. +...|..+..++.+.|++++ ++.|++..+.+. -+...|..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~--~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG--ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777654222 34566677777777777777 777777766532 255667777777777777777777
Q ss_pred HHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCc
Q 043204 208 LLYSMFWRISQKGSGED-IVIYRTLLFALCDQGK 240 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 240 (504)
.|+++ .+ ..|+ ...+..+..++...++
T Consensus 556 ~~~~a----l~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEV----PP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTS----CT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHhh----cc--cCcccHHHHHHHHHHHHccCC
Confidence 77755 33 2333 4555566666655443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.01 E-value=6.1e-09 Score=100.55 Aligned_cols=154 Identities=13% Similarity=-0.008 Sum_probs=118.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAV 100 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (504)
.|++++|+..|+++.+..|+ +...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47899999999999998776 78899999999999999999999999999887 667888999999999999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc---CCHHHHHHHHHHh
Q 043204 101 SLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC---RRSDLALHVFQEM 177 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 177 (504)
+.|++..+.+ +.+...+..+...+.+.|++++|...|++.....+ .+...+..+..++... |+.++|.+.+++.
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999988865 33477889999999999999999999999876532 2456778899999999 9999999999999
Q ss_pred hhCC
Q 043204 178 DFQG 181 (504)
Q Consensus 178 ~~~~ 181 (504)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8764
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=9.8e-07 Score=82.67 Aligned_cols=366 Identities=8% Similarity=-0.038 Sum_probs=200.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCC-hhHHHHHHHHhhcC-CC-CccHHHHHHHHHH
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNR-ITEMKEVIDQMKGD-SC-ECKDSVFATAIRT 89 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~ 89 (504)
..+..+-. |+++.+..+|++..... |+...|...+....+.++ .+....+|+..... |. +.+...|...+..
T Consensus 20 r~l~~~P~-~~~e~~~~iferal~~~----ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 20 HARRLYMS-KDYRSLESLFGRCLKKS----YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHCCC-CCHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 33444433 89999999999999864 488899999988777663 45677788877653 32 3466778888776
Q ss_pred HH----hcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 90 YA----RAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 90 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
+. ..++.+.+.++|+.........-...|......-.. .+...+..++.+.. +
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~----------------------~ 151 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL----------------------P 151 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH----------------------H
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh----------------------H
Confidence 54 346788999999999874222212222222221111 11111222211110 1
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc--C-----CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 043204 166 RSDLALHVFQEMDFQGCYPDRESYHILMKGLCND--R-----RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ 238 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (504)
.+..|..+++.+...-...+...|...+..-... + ..+.+..+|+++ .... +.+...|...+..+.+.
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a----l~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI----LDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH----HHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH----HHcC-CCCHHHHHHHHHHHHHc
Confidence 1222222222222100000122333322211110 0 023344555555 2221 22355555555656666
Q ss_pred CchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcC------------CCCChhhHHHHHHHH
Q 043204 239 GKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRG------------GIPSLASYSAMAIDL 306 (504)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~ll~~~ 306 (504)
|+.+.|..++++.... |.+.......... ... +.. ++.+.+.- .......|...+...
T Consensus 227 ~~~~~ar~i~erAi~~---P~~~~l~~~y~~~-~e~---~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM---SDGMFLSLYYGLV-MDE---EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHHHHHHH-TTC---THH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHhh-cch---hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 6666666666666665 3332222111111 000 111 11111110 001124556666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHH
Q 043204 307 YNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK-DGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAV 385 (504)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (504)
.+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+.++...+-. ...+...++...+.|+.+.
T Consensus 297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHH
Confidence 6678899999999999 32 12233344322222222 336999999999977765433 3456667777788999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 386 AVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 386 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
|..+|+.+. .....|...+..-...|+.+.+.+++++..+
T Consensus 373 aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999973 2567788888877888999999999998875
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=8.2e-09 Score=90.92 Aligned_cols=205 Identities=9% Similarity=0.003 Sum_probs=138.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEA 99 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (504)
..|++++|.++++++.+..++ . .+...+++++|...|+.. ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~---~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT---S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC---C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc---c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 357788999999998876432 1 011146677777776654 4566777888888
Q ss_pred HHHHHHhhhC----CCC-ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC---CCCc-chHHHHHHHHHHHhhcCCHHHH
Q 043204 100 VSLFKNLSQF----NCV-NWTQSFNTLLKEMVKESKLEAAHILFLRSCYG---WEVK-SRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 100 ~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~~~~a 170 (504)
...|.+..+. +.. .-..+|+.+...|...|++++|+..|++.... .+.. ....+++.+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 8888766532 111 11346777778888888888888888776432 1111 124567778888888 999999
Q ss_pred HHHHHHhhhCCCC---C--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCchhHH
Q 043204 171 LHVFQEMDFQGCY---P--DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDI-VIYRTLLFALCDQGKIQDA 244 (504)
Q Consensus 171 ~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 244 (504)
+..|++..+.... + ...++..+...+.+.|++++|...|++........+..+.. ..+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9988877653110 0 13567778888899999999999999886544444332222 3566677778888999999
Q ss_pred HHHHHHHH
Q 043204 245 MQILEKIL 252 (504)
Q Consensus 245 ~~~~~~~~ 252 (504)
...|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999887
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=9.9e-08 Score=79.71 Aligned_cols=189 Identities=7% Similarity=-0.057 Sum_probs=113.7
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccH--HHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCE--CKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWT--QSFN 119 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 119 (504)
+...+..+...+.+.|++++|...|+.+.+.... .....+..+..++.+.|++++|+..|+.+.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888889999999999998875411 12356777888889999999999999988775533221 2344
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHh-h----------
Q 043204 120 TLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRE-S---------- 188 (504)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~---------- 188 (504)
.+...+...+.. .+ ..|..+...+...|++++|...|+++.+.. |+.. .
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHH
Confidence 444444432100 00 001111122223344444444444444431 2211 1
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC-c-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCC
Q 043204 189 -------YHILMKGLCNDRRLNEATHLLYSMFWRISQKGSG-E-DIVIYRTLLFALCDQGKIQDAMQILEKILRKGL 256 (504)
Q Consensus 189 -------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 256 (504)
...+...+.+.|++++|...|+++. +.... | ....+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l----~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGML----RDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH----HHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1234566788899999999998883 33221 1 135677788899999999999999988877643
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=5e-08 Score=82.29 Aligned_cols=186 Identities=8% Similarity=-0.159 Sum_probs=132.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHH-------HHHHhccCChhHHHHHHHHhhcC------------CC----
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASM-------IGILSESNRITEMKEVIDQMKGD------------SC---- 76 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~---- 76 (504)
..+++++|.+.|.++.+.+|+ ....|..+ ...+.+.++..++...+..-... |+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 578999999999999999998 88899888 57777777777777777766552 21
Q ss_pred C----ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcch--
Q 043204 77 E----CKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSR-- 150 (504)
Q Consensus 77 ~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 150 (504)
. -.......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 0 112334556777888899999999998887655 322255566667888888888888887654321 221
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 151 IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPD--RESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|...|+++
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23566677788888888888888888875432243 234555666777888888888888887
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=4.9e-08 Score=85.95 Aligned_cols=209 Identities=11% Similarity=0.006 Sum_probs=122.0
Q ss_pred cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043204 128 ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATH 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 207 (504)
.|++++|..++++...... .. .+...++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 5677778777776654211 10 011147777777777664 345667788888888
Q ss_pred HHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHH
Q 043204 208 LLYSMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINE 286 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 286 (504)
.|.+........+..+. ..+|+.+..+|...|++++|+..|++.++.... .|+...
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~----------------~g~~~~------- 114 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE----------------NGTPDT------- 114 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT----------------TTCHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----------------cCCHHH-------
Confidence 88877544333332211 346777888888888888888888887653111 111111
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----c-chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 043204 287 ALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFW----P-SLVMYEAKLAALFKDGMVDEALEVIEEEMVKG 361 (504)
Q Consensus 287 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (504)
...++..+...|.. |++++|+..|++..+.... + ...++..+...|...|++++|+..|++++...
T Consensus 115 --------~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 115 --------AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp --------HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 12344455555555 7777777777666542100 0 13456666677777777777777777644321
Q ss_pred ---CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043204 362 ---TFVPT-VRVYNILLKGLCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 362 ---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (504)
+..+. ...+..+..++...|++++|...|++..
T Consensus 186 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11111 1244555556666677777777777765
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=6.7e-09 Score=80.41 Aligned_cols=145 Identities=10% Similarity=-0.036 Sum_probs=93.0
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcch
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESK 130 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (504)
|...+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++..+.++ .+..+|..+...|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 4455666778888888888777653 33444566777888888888888888888777652 346677777777777788
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHH-HHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043204 131 LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHV-FQEMDFQGCYPDRESYHILMKGLCNDR 200 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~ 200 (504)
+++|...|++.....+ -+..+|..+...|.+.|+.++|.+. +++..+.. +-++.+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 8888777777765422 2345667777777777777665544 46655542 124455555555544444
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=6.6e-07 Score=78.12 Aligned_cols=171 Identities=10% Similarity=-0.084 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCC-CccH----HHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcch----HHH
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQFNC-VNWT----QSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSR----IQS 153 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 153 (504)
+...+..+...|++++|.+.++...+... .|+. ..+..+...+...+++++|...|++........++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 44457788899999999999999876432 2321 13335666777778999999999998763222222 346
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhh----C-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HH
Q 043204 154 LNLLMDVLCQCRRSDLALHVFQEMDF----Q-GCYPD-RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IV 226 (504)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 226 (504)
++.+..+|...|++++|...|++..+ . +..+. ..++..+...|.+.|++++|...+++........+..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 88999999999999999999998874 1 11122 236788888999999999999999988665555544444 67
Q ss_pred HHHHHHHHHHhcCc-hhHHHHHHHHHHH
Q 043204 227 IYRTLLFALCDQGK-IQDAMQILEKILR 253 (504)
Q Consensus 227 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 253 (504)
+|..+..+|.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999999995 6999999988765
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=4.8e-07 Score=79.01 Aligned_cols=170 Identities=11% Similarity=-0.026 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCcc-----HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCC--Ccc--hHH
Q 043204 82 VFATAIRTYARAGQLNEAVSLFKNLSQFNCVNW-----TQSFNTLLKEMVKESKLEAAHILFLRSCYGWE--VKS--RIQ 152 (504)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~ 152 (504)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++...... ..+ ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455555566666666666655444322111 11223344445555566666666655542111 111 133
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhC-CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-H
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQ-GCYPD-----RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-I 225 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 225 (504)
+++.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++........+.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5566666666666666666666655411 00111 135555566666666666666666665433222222211 4
Q ss_pred HHHHHHHHHHHhcCchhHH-HHHHHHH
Q 043204 226 VIYRTLLFALCDQGKIQDA-MQILEKI 251 (504)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a-~~~~~~~ 251 (504)
.+|..+..+|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5566666666666666666 5545544
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=4.6e-06 Score=72.15 Aligned_cols=220 Identities=13% Similarity=0.053 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH----Hhc
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDR--RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFAL----CDQ 238 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 238 (504)
...++|+++++.+...+.. +...|+.--..+...+ ++++++++++.+ .....+ +..+|+.--..+ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~----L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEI----ALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHH----HHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHH----HHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 3346788888877765322 3445666666666666 788888888777 343332 344444433333 333
Q ss_pred ---CchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh--
Q 043204 239 ---GKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIV-- 313 (504)
Q Consensus 239 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-- 313 (504)
+++++++++++.+.+... . +...|+.-.-.+.+.|.++
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p------------------------------------k-ny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP------------------------------------K-NHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT------------------------------------T-CHHHHHHHHHHHHHTTCTTCH
T ss_pred cccCCHHHHHHHHHHHHHhCC------------------------------------C-CHHHHHHHHHHHHHhcccChH
Confidence 456666666666665432 2 6677777766667777777
Q ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCC------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHH-H
Q 043204 314 EGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGM------VDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAV-A 386 (504)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a 386 (504)
++++.++++.+..+. |-..|+.-...+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+... +
T Consensus 164 ~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHH
Confidence 888888888887654 66667665555555555 677777777655554 4456666666666666665433 4
Q ss_pred HHHHHHHHHhcC--CCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 387 VMYLKKMSKQVG--CVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 387 ~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
..+..++... + -..+...+..+.++|.+.|+.++|.++++.+.+
T Consensus 241 ~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 241 EEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4455544432 1 122445566666666666666666666666654
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=3.8e-08 Score=73.44 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=53.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYA 91 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
......|.+.|++++|++.|+++.+..|. +..+|..+..++.+.|++++|++.|++..+.+ +.+...|..+..++.
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 33445555555566666666555555554 55555555555555555555555555555544 444455555555555
Q ss_pred hcCChhHHHHHHHHhhhCC
Q 043204 92 RAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~ 110 (504)
..|++++|++.|+...+.+
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 5555555555555555443
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=1.4e-06 Score=76.03 Aligned_cols=176 Identities=9% Similarity=0.006 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHH----HHHHHHHHHhhcCCHHHHHHHHHHhhhCCCC-CC----Hh
Q 043204 117 SFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQ----SLNLLMDVLCQCRRSDLALHVFQEMDFQGCY-PD----RE 187 (504)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~ 187 (504)
.+...+..+...|++++|...+++........|+.. .+..+...+...+++++|...|++..+.... ++ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 334457788899999999999999887655555532 3445777788888999999999999874222 23 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC-CCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhh
Q 043204 188 SYHILMKGLCNDRRLNEATHLLYSMFWRISQK-GSGED-IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHR 265 (504)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 265 (504)
+++.+...|...|++++|...|+++....... +..+. ..++..+..+|.+.|++++|.+.+++.++.....
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~------- 229 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------- 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-------
Confidence 68889999999999999999999996544443 22222 3478889999999999999999999887632110
Q ss_pred hhccccCCCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 043204 266 IDLCPCNDGEDIEGAKSLINEALIRGGIP-SLASYSAMAIDLYNEGR-IVEGDKVLDEMRT 324 (504)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 324 (504)
+..+ -...+..+..++.+.|+ +++|...+++...
T Consensus 230 -------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 -------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 0001 14566777777777884 5888888877654
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=7.3e-08 Score=79.06 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=61.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhc----CCC-CccHHHHHHHHHHHHhc
Q 043204 19 KKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKG----DSC-ECKDSVFATAIRTYARA 93 (504)
Q Consensus 19 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 93 (504)
...|++++|.+.++..... | .....++..+...+...|++++|...+++..+ .+. +....++..+...+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-P--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-T--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCC-h--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 3456777777755444332 2 12455666666677777777777777766554 111 11223456666666666
Q ss_pred CChhHHHHHHHHhhhC----CCC--ccHHHHHHHHHHHHhcchHHHHHHHHHHh
Q 043204 94 GQLNEAVSLFKNLSQF----NCV--NWTQSFNTLLKEMVKESKLEAAHILFLRS 141 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (504)
|++++|...+++..+. +.. ....++..+...+...|++++|...+++.
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666666654432 101 11233444555555555555555555444
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=1.1e-07 Score=75.04 Aligned_cols=126 Identities=12% Similarity=-0.014 Sum_probs=86.0
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+...|++++|+..|+++.+..|. +..++..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445566677778888888888888777665 66777777777777888888888887777665 55566777777777
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHH--HHHHHHHHhcchHHHHHHHHHHh
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSF--NTLLKEMVKESKLEAAHILFLRS 141 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~ 141 (504)
...|++++|...|++..+.... +...+ ...+..+.+.|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7778888888887777665432 22233 23333355667777776666554
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.83 E-value=1.8e-06 Score=75.46 Aligned_cols=228 Identities=10% Similarity=-0.010 Sum_probs=168.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccC-ChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESN-RITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.....+.+..++|+++++.++..+|. +..+|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+.
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 33444555667999999999999888 8888998888888888 5999999999999887 67778899888888877
Q ss_pred -C-ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHH--------HHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 94 -G-QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLE--------AAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 94 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
+ ++++++++++.+.+.+.. +..+|+.-.-.+.+.+.++ ++++.++++.... +-|...|+.....+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 7 899999999999987744 4667776666666666666 8889988887653 3366778887777777
Q ss_pred cCC-------HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHHH
Q 043204 164 CRR-------SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRL--------------------NEATHLLYSMFWRI 216 (504)
Q Consensus 164 ~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~ 216 (504)
.+. ++++++.+++...... -|...|+.+-..+.+.|.. ....+....+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 288 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM---- 288 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC----
T ss_pred ccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH----
Confidence 776 6889999988887653 3777787776666665543 2222222222
Q ss_pred hhCC-----CCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 217 SQKG-----SGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 217 ~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
...+ ..++......++..|...|+.++|.++++.+.+.
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 2211 1356778888889999989999999999888653
No 124
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=1.6e-07 Score=90.57 Aligned_cols=153 Identities=10% Similarity=-0.034 Sum_probs=97.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHH
Q 043204 275 EDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVI 354 (504)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (504)
|++++|...++++.+.... +...+..+...+...|++++|...+++..+.... +...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555555544443222 4566777777777778888888888887776432 5667777777888888888888888
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhc---CcHHHHHHHHHHHHh
Q 043204 355 EEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRD---GRFLEASRVLEEMLI 431 (504)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 431 (504)
++++... +.+...+..+..+|...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++..+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8766553 335667777777888888888888888887764 123456677777777777 888888888888777
Q ss_pred cC
Q 043204 432 RS 433 (504)
Q Consensus 432 ~~ 433 (504)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=5e-08 Score=73.68 Aligned_cols=97 Identities=7% Similarity=0.064 Sum_probs=60.6
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+...|++++|+..|+++.+..|. +..++..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3445556666666666666666666666554 55666666666666666666666666666554 4455556666666
Q ss_pred HHhcCChhHHHHHHHHhhhCC
Q 043204 90 YARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (504)
+...|++++|.+.|++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 666666666666666655543
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=2.3e-08 Score=77.14 Aligned_cols=110 Identities=9% Similarity=-0.049 Sum_probs=71.9
Q ss_pred HHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 043204 30 IFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 30 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (504)
.|+++....|+ +...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|+...+.
T Consensus 9 ~~~~al~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555443 55566666677777777777777777776665 556666777777777777777777777776665
Q ss_pred CCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 110 NCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 110 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
++ .+...+..+..++...|++++|...|++....
T Consensus 85 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DI-XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 42 23455666666777777777777777666543
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=5e-07 Score=74.66 Aligned_cols=129 Identities=6% Similarity=-0.076 Sum_probs=88.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHh
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK 127 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (504)
+..+...+...|++++|.+.|++.. .|+..++..+...+...|++++|+..|+...+.+ +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455666667777777777777663 4466677777777777777777777777766654 2345666777777777
Q ss_pred cchHHHHHHHHHHhhcCCCCc-------------c-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCC
Q 043204 128 ESKLEAAHILFLRSCYGWEVK-------------S-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQG 181 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~-------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 181 (504)
.|++++|...|++.....+.. | ....+..+..+|...|++++|.+.|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777766532211 1 23567778888888888888888888887753
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.78 E-value=4e-08 Score=78.63 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=90.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH-HHhcCCh
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT-YARAGQL 96 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 96 (504)
+...|++++|+..|+...+..|. +...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 34577888888888888888776 77788888888888888888888888888765 5566677777777 7778887
Q ss_pred --hHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 97 --NEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 97 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
++|...|+...+.+. .+...+..+...+...|++++|...|++....
T Consensus 96 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888777653 33566677777777888888888888777654
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.8e-07 Score=69.63 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=57.6
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+...|++++|+..|+++.+..|. +..++..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3444555566666666666666666665443 45556666666666666666666666665544 3445555566666
Q ss_pred HHhcCChhHHHHHHHHhhhCC
Q 043204 90 YARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (504)
+...|++++|...|+.+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 666666666666666655443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=5.2e-08 Score=74.95 Aligned_cols=99 Identities=11% Similarity=-0.109 Sum_probs=70.7
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...+..+...+.+.|++++|...|++..... |.+...|..+..+|...|++++|+..|++..+.++ .+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 55566777777777777777777777777765 55666777777777777777777777777776553 23556677777
Q ss_pred HHHhcchHHHHHHHHHHhhcC
Q 043204 124 EMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (504)
+|...|++++|...|++....
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=2.8e-07 Score=75.46 Aligned_cols=102 Identities=14% Similarity=-0.054 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhC----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-
Q 043204 152 QSLNLLMDVLCQCRRSDLALHVFQEMDFQ----GCYP--DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED- 224 (504)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 224 (504)
.++..+...+...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++........+....
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34555555566666666666666554432 1011 1233555556666667777776666666433222222111
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 225 IVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
..++..+..++...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23345666667777777777777766654
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=1.6e-08 Score=77.87 Aligned_cols=123 Identities=9% Similarity=0.043 Sum_probs=86.8
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
....+.+.+...+.+. ++.+.. |.+...+..+...+.+.|++++|+..|+...+.+ +.+...|..+..++.
T Consensus 11 ~~~~l~~~~~~~~~l~-------~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 11 ISTAVIDAINSGATLK-------DINAIP-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHHTSCCTG-------GGCCSC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHH-------HHhCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3455555555444443 333333 4445567777788888888888888888887765 334667788888888
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
..|++++|+..|++.....+. +...|..+..+|...|++++|...|++..+.
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKN--DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888887765332 3456777888888888888888888888775
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=1.8e-06 Score=75.39 Aligned_cols=174 Identities=9% Similarity=-0.010 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcch----HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCC---CCC--H
Q 043204 116 QSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSR----IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGC---YPD--R 186 (504)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~ 186 (504)
..+...+..+...|++++|...+++........++ ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667777888888888888776654332222 12344566667777888888888887765321 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC----CCCCc
Q 043204 187 ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE--DIVIYRTLLFALCDQGKIQDAMQILEKILRKG----LKAPK 260 (504)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~ 260 (504)
.+|+.+...|...|++++|...|++........+..+ ...++..+..+|...|++++|...+++..+.. .....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677788888888888888888888754433333222 22578888888888888888888888765432 12222
Q ss_pred chhhhhhccccCCCCChHHH-HHHHHHHHH
Q 043204 261 SRRHRIDLCPCNDGEDIEGA-KSLINEALI 289 (504)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~ 289 (504)
...+..+..++...|+++.| ...++....
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 44555667777888888888 666766653
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=8e-07 Score=73.41 Aligned_cols=129 Identities=9% Similarity=-0.092 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 043204 298 SYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGL 377 (504)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (504)
.+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...|++++... +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 34444555566677777776666553 3456666666666677777777777776655443 33455666666666
Q ss_pred HhcCChHHHHHHHHHHHHhcCCCC--------------chhhHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 043204 378 CDAGNSAVAVMYLKKMSKQVGCVA--------------NGETYGILVDGLCRDGRFLEASRVLEEMLIR 432 (504)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 432 (504)
...|++++|.+.|++..+...-.+ ....+..+..+|.+.|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 667777777777766665311111 1145555666666666666666666666654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=2e-07 Score=73.45 Aligned_cols=94 Identities=7% Similarity=-0.002 Sum_probs=47.7
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
.+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...|+...+... .+..++..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34455555555566666666665555543 33445555555555555555555555555544331 22334444444444
Q ss_pred hcchHHHHHHHHHHhh
Q 043204 127 KESKLEAAHILFLRSC 142 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~ 142 (504)
..|++++|...|++..
T Consensus 93 ~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 93 ALGKFRAALRDYETVV 108 (166)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4444444444444443
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=3.3e-08 Score=85.64 Aligned_cols=97 Identities=6% Similarity=-0.096 Sum_probs=73.8
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..+..+...+...|++++|+..|+++.+..|. +...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555667777888888888888888887665 67777788888888888888888888887765 556667777778
Q ss_pred HHHhcCChhHHHHHHHHhhhC
Q 043204 89 TYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (504)
++...|++++|...|+...+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888776653
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=2.3e-07 Score=69.65 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=52.1
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+...|++++|+..|+++.+..|. +...+..+...+...|++++|.+.++...+.. +.+...+..+...+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 334445555556666666666665555443 44555555555555566666666655555543 33444555555555
Q ss_pred HhcCChhHHHHHHHHhhhC
Q 043204 91 ARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~ 109 (504)
...|++++|...|+...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 5555555555555555444
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=2e-07 Score=69.45 Aligned_cols=97 Identities=3% Similarity=-0.015 Sum_probs=61.2
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
...+......+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|+..|+...+.+. .+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 3455666666777777777777777766655 55566666666677777777777777766665542 234555566666
Q ss_pred HHhcchHHHHHHHHHHhhc
Q 043204 125 MVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~ 143 (504)
+...|++++|...|++..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666665554
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.66 E-value=3.9e-07 Score=66.18 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=77.8
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCc--cHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCEC--KDSVFA 84 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 84 (504)
+...+..+...+...|++++|+..|+++.+..|. +...+..+..++...|++++|.+.|++..+.. +. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 3455667777888888888888888888887665 66777778888888888888888888887765 44 567777
Q ss_pred HHHHHHHhc-CChhHHHHHHHHhhhCCC
Q 043204 85 TAIRTYARA-GQLNEAVSLFKNLSQFNC 111 (504)
Q Consensus 85 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 111 (504)
.+..++... |++++|.+.++...+...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 788888888 888888888888776553
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=1.9e-07 Score=69.01 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=70.1
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+-.+...+.+.|++++|+..|+++.+..|+ +...|..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445566777777888888888888777766 67777777777777788888888777777765 4556667777777
Q ss_pred HHhcCChhHHHHHHHHhhhCC
Q 043204 90 YARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (504)
+...|++++|+..|+...+.+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777766543
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=5.4e-07 Score=80.23 Aligned_cols=130 Identities=9% Similarity=-0.059 Sum_probs=93.1
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------------chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCC
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRH------------NGPVYASMIGILSESNRITEMKEVIDQMKGDSCE 77 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (504)
.+..+...+.+.|++++|+..|+++.+..|.... ...+|..+..++.+.|++++|+..+++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 3556777888899999999999999988765100 04677777778888888888888888877765 5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHH-HHHHHHh
Q 043204 78 CKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAA-HILFLRS 141 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~ 141 (504)
.+...+..+..+|...|++++|+..|+...+... .+..++..+...+.+.|+.++| ...|+.+
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777788888888888888887776553 2355666777777777777766 3344444
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=1.7e-07 Score=71.75 Aligned_cols=96 Identities=7% Similarity=-0.042 Sum_probs=50.4
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|+...+.++ .+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3344445555555555555555555555544 34445555555555555555555555555554432 223444455555
Q ss_pred HHhcchHHHHHHHHHHhh
Q 043204 125 MVKESKLEAAHILFLRSC 142 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~ 142 (504)
+...|++++|...|++..
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555544
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=5.6e-07 Score=69.26 Aligned_cols=97 Identities=9% Similarity=-0.105 Sum_probs=87.7
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+...|++++|+..|+++....|. +...|..+..++...|++++|...|++..+.. +.+...+..+..+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 4556778889999999999999999999887 88899999999999999999999999999887 6677889999999
Q ss_pred HHhcCChhHHHHHHHHhhhCC
Q 043204 90 YARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (504)
+...|++++|...|+...+..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999987654
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.4e-07 Score=67.24 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=76.7
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+.+.|++++|+..|+++.+..|+ +...|..+..++.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3455667778888888888888888888776 77788888888888888888888888888776 5566778888888
Q ss_pred HHhcCChhHHHHHHHHhhhCC
Q 043204 90 YARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (504)
+...|++++|...|++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888888888888888776543
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=1.2e-07 Score=84.45 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=80.3
Q ss_pred CChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCcc--------------HHHHHHHHHH
Q 043204 59 NRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNW--------------TQSFNTLLKE 124 (504)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~ 124 (504)
+++++|.+.++...... +.+...+..+...+.+.|++++|+..|++..+...... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444332 23445677777788888888888888887776543321 2455555555
Q ss_pred HHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043204 125 MVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNE 204 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 204 (504)
+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..+... -+...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554331 12334445555555555555555555555554321 134444455555555555555
Q ss_pred H-HHHHHHH
Q 043204 205 A-THLLYSM 212 (504)
Q Consensus 205 a-~~~~~~~ 212 (504)
+ ...|+.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 4 2344444
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=4.5e-06 Score=70.46 Aligned_cols=188 Identities=13% Similarity=-0.023 Sum_probs=141.3
Q ss_pred ccCChhHHHHHHHHhhcCCCCccHHHHHHH-------HHHHHhcCChhHHHHHHHHhhh------------CCC----C-
Q 043204 57 ESNRITEMKEVIDQMKGDSCECKDSVFATA-------IRTYARAGQLNEAVSLFKNLSQ------------FNC----V- 112 (504)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~----~- 112 (504)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-.+ .|. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5799999999999999887 6677888877 5666666666666666665443 221 0
Q ss_pred ---ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH---
Q 043204 113 ---NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR--- 186 (504)
Q Consensus 113 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--- 186 (504)
........+...+...|++++|.++|+.+.... |+......+...+.+.+++++|+..|+..... |+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccH
Confidence 112344567788889999999999999887542 33336666777899999999999999866553 222
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 043204 187 -ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED--IVIYRTLLFALCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 187 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 255 (504)
..+..+-.++...|++++|+..|++. ......|. .........++.+.|+.++|...|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a----~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEA----NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH----HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH----hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 36777888899999999999999988 54333253 3466677888999999999999999999874
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-06 Score=66.20 Aligned_cols=98 Identities=4% Similarity=0.003 Sum_probs=64.0
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.|+...+... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 45566667777777777777777777777654 44566667777777777777777777776665432 23455566666
Q ss_pred HHHhcchHHHHHHHHHHhhc
Q 043204 124 EMVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~ 143 (504)
.+...|++++|...|++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666554
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=6.2e-07 Score=65.81 Aligned_cols=97 Identities=10% Similarity=0.001 Sum_probs=68.7
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+...|++++|+..|+++....|. +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666777777777777777777777655 66667777777777777777777777777665 4456667777777
Q ss_pred HHhcCChhHHHHHHHHhhhCC
Q 043204 90 YARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~ 110 (504)
+...|++++|.+.|+...+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 777777777777777766654
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=3.5e-07 Score=79.16 Aligned_cols=194 Identities=8% Similarity=-0.021 Sum_probs=131.9
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...+..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|+..++...+.+. .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 56778888999999999999999999999876 56788899999999999999999999999988763 45678889999
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchH-HHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRI-QSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRL 202 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 202 (504)
++...|++++|...|++..... |+. ..+...+....+.. ++.. +..........+......+ ..+ ..|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 9999999999999999876432 211 11111222221111 1111 1222222333444443333 322 36888
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhc-CchhHHHHHHHHHHHc
Q 043204 203 NEATHLLYSMFWRISQKGSGEDI-VIYRTLLFALCDQ-GKIQDAMQILEKILRK 254 (504)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 254 (504)
++|.+.++.. .+ ..|+. .....+...+.+. +.+++|.++|.++.+.
T Consensus 152 ~~A~~~~~~a----l~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRN----HE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGG----GT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhh----hc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9998888765 33 34443 3334444445554 5688899999887653
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=9.5e-05 Score=64.69 Aligned_cols=176 Identities=10% Similarity=-0.005 Sum_probs=106.0
Q ss_pred hhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc-C
Q 043204 162 CQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDR-RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ-G 239 (504)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 239 (504)
.+.+..++|+++++.+...+.. +...|+.--..+...| .+++++.+++.+ .....+ +..+|+.-..++... +
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~----L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEF----AVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHhCCC-cHHHHHHHHHHHHHhcC
Confidence 3344456778888877765422 4445565555555666 478888888777 444333 566666665555554 5
Q ss_pred -chhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh-----
Q 043204 240 -KIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIV----- 313 (504)
Q Consensus 240 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----- 313 (504)
++++++++++.+.+.... +...|+.-.-.+.+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-------------------------------------Ny~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-------------------------------------NYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-------------------------------------CHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CChHHHHHHHHHHHHhCCC-------------------------------------CHHHHHHHHHHHHHhccccccchh
Confidence 667777777777654321 4445554444444444444
Q ss_pred ---HHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCC-------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh
Q 043204 314 ---EGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGM-------VDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNS 383 (504)
Q Consensus 314 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (504)
++++.++++.+..+. |...|+.....+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+.
T Consensus 182 ~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCC
Confidence 777777777776544 66677766666666665 577777777756554 34555666555555555543
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=3.7e-07 Score=72.91 Aligned_cols=123 Identities=9% Similarity=0.055 Sum_probs=94.4
Q ss_pred HhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH-HHhcchH--
Q 043204 55 LSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE-MVKESKL-- 131 (504)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~-- 131 (504)
+...|++++|...++...+.. +.+...+..+...|...|++++|...|+...+.+. .+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 456788899999998888776 66778889999999999999999999998887653 345677777777 7788888
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCC
Q 043204 132 EAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQG 181 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 181 (504)
++|...|++.....+ .+...+..+...|...|++++|...|++..+..
T Consensus 98 ~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999988876532 245667788888889999999999999888763
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=6e-07 Score=68.64 Aligned_cols=96 Identities=11% Similarity=-0.097 Sum_probs=86.8
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+.+.|++++|+..|+++....|. +...|..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 445677888999999999999999999887 88899999999999999999999999999887 67778899999999
Q ss_pred HhcCChhHHHHHHHHhhhCC
Q 043204 91 ARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~ 110 (504)
...|++++|...|+...+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887654
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.4e-05 Score=74.15 Aligned_cols=207 Identities=9% Similarity=-0.001 Sum_probs=145.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcc--------------hhcHHHHHHHHhccCChhHHHHHHHHhhcCCC-Ccc
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHN--------------GPVYASMIGILSESNRITEMKEVIDQMKGDSC-ECK 79 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 79 (504)
.+.+.+.|++++|++.|..+.+..|..... ..++..+...|...|++++|.+.+..+...-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 566788999999999999999886542111 01377888999999999999999988764210 122
Q ss_pred HH----HHHHHHHHHHhcCChhHHHHHHHHhhh----C-CCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC---C-C
Q 043204 80 DS----VFATAIRTYARAGQLNEAVSLFKNLSQ----F-NCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG---W-E 146 (504)
Q Consensus 80 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~ 146 (504)
.. +.+.+-..+...|+++.|..++..... . .......++..+...+...|++++|..+++++... . +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 233334444567889999999887653 2 22334567888999999999999999999876531 1 1
Q ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC--CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Q 043204 147 VKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ--GCYPD----RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKG 220 (504)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 220 (504)
.+....++..++..|...|++++|..++++.... .+..+ ...+..+...+...+++++|...|.+.+......+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 2223567888899999999999999999877542 11111 23455666677788999999999888865544444
Q ss_pred C
Q 043204 221 S 221 (504)
Q Consensus 221 ~ 221 (504)
.
T Consensus 251 ~ 251 (434)
T 4b4t_Q 251 T 251 (434)
T ss_dssp T
T ss_pred h
Confidence 3
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=2.6e-06 Score=63.06 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHH
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGL 448 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (504)
.+..+...+...|++++|.+.++++.+. .+.+..++..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444444455555555555544433 11233344444444555555555555555544432 22334444444555
Q ss_pred HccCCHHHHHHHHHHHHH
Q 043204 449 CSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~ 466 (504)
...|++++|.+.++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555543
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=1.1e-06 Score=69.04 Aligned_cols=98 Identities=9% Similarity=-0.025 Sum_probs=80.8
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..+..+...+...|++++|+..|+++.+..|. +...|..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566777888888999999999998888776 77888888888888899999999988888876 566778888888
Q ss_pred HHHhcCChhHHHHHHHHhhhCC
Q 043204 89 TYARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~ 110 (504)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888889999988888877654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=1e-07 Score=77.90 Aligned_cols=124 Identities=11% Similarity=-0.029 Sum_probs=53.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH-------------
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKD------------- 80 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 80 (504)
.+......|++++|.+.|+...+..+. ....+..+...+...|++++|...|++..+.. +.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ------------CCCSGGGCCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHH
Confidence 334444455555555555433332111 34445566666666777777777776666543 1111
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 81 ---SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 81 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
.++..+..++...|++++|+..++...+.. +.+...+..+..++...|++++|...|++..
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344444444555555555555555444432 1223344444444444444444444444443
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=7.3e-06 Score=76.06 Aligned_cols=171 Identities=8% Similarity=-0.061 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchH----HHHHHHHHHHhhcCCHHHHHHHHHHhhh----CCCCCC-Hhh
Q 043204 118 FNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRI----QSLNLLMDVLCQCRRSDLALHVFQEMDF----QGCYPD-RES 188 (504)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~ 188 (504)
+..+...|...|++++|...+..+....+..++. .+.+.+-..+...|+.+.|.++++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4566666777777777777666654321111111 2233344445556788888888776643 222222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcC--CCCC---cch
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDAMQILEKILRKG--LKAP---KSR 262 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~---~~~ 262 (504)
+..+...+...|++++|..++++........+..+. ..++..++..|...|++++|..++++..... ...+ ...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888888899999999998887654444333332 4577788888999999999999888876531 1111 112
Q ss_pred hhhhhccccCCCCChHHHHHHHHHHH
Q 043204 263 RHRIDLCPCNDGEDIEGAKSLINEAL 288 (504)
Q Consensus 263 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (504)
....+...+...++++.|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33334455566666666666555554
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.52 E-value=8.1e-07 Score=67.39 Aligned_cols=99 Identities=6% Similarity=-0.099 Sum_probs=74.8
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+...+..+...+...|++++|+..|+.+.+..|. +...|..+..++...|++++|...++...+.. +.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3445566677777888888888888888877665 67777778888888888888888888877765 5566677777
Q ss_pred HHHHHhcCChhHHHHHHHHhhhC
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~ 109 (504)
..++...|++++|+..|+...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888776653
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=3.6e-05 Score=67.00 Aligned_cols=186 Identities=8% Similarity=-0.037 Sum_probs=122.2
Q ss_pred HhcCChh-HHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCC----------hhHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 19 KKQKSPL-TALKIFKEAKEKYPNYRHNGPVYASMIGILSESNR----------ITEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 19 ~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+.|.++ +|+.+++.+...+|. +..+|+.--.++...++ +++++.+++.+.... +-+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455554 788888888888776 66677666555544443 567888888888766 66777788777
Q ss_pred HHHHhcC--ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcch-HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc
Q 043204 88 RTYARAG--QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESK-LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 88 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 164 (504)
-++...+ ++++++.+++.+.+.++. +..+|+.-.-.+...|. +++++..++++.... +-|...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHh
Confidence 7777777 478888888888877643 35666666666666776 577888887777653 33455565555544443
Q ss_pred --------------CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 043204 165 --------------RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCND-----------RRLNEATHLLYSM 212 (504)
Q Consensus 165 --------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 212 (504)
+.++++++.++......+ -|...|+-+-..+.+. +.++++++.++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 346777777777766542 2566666554444433 3456677777666
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=2.5e-06 Score=63.85 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc
Q 043204 371 NILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS 450 (504)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (504)
..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 33333344444444444444444332 11123333334444444444444444444444321 1123333344444444
Q ss_pred cCCHHHHHHHHHHHH
Q 043204 451 IGKQYEAVMWLEEMI 465 (504)
Q Consensus 451 ~g~~~~a~~~~~~~~ 465 (504)
.|++++|.+.+++..
T Consensus 93 ~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 93 LNKHVEAVAYYKKAL 107 (131)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 444444444444444
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.49 E-value=4.7e-07 Score=67.56 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=61.0
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC--Ccc----HHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC--ECK----DSVFA 84 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 84 (504)
+..+...+.+.|++++|+..|+++.+..|. +..+|..+..+|...|++++|++.+++..+... .++ ..+|.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445666677777777777777777777665 666777777777777777777777776664320 000 12455
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (504)
.+..++...|++++|++.|+...+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666665543
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=2e-06 Score=70.06 Aligned_cols=128 Identities=11% Similarity=-0.023 Sum_probs=99.0
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc--------------hhcHHHHHHHHhccCChhHHHHHHHHhhcCCC
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHN--------------GPVYASMIGILSESNRITEMKEVIDQMKGDSC 76 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 76 (504)
+..+...+...|++++|+..|+++.+..|. .|+ ..+|..+..++...|++++|...++...+..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 455677888999999999999999987664 111 2678889999999999999999999999876
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHH-HHHHHh
Q 043204 77 ECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAH-ILFLRS 141 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~ 141 (504)
+.+...+..+..++...|++++|...|+...+... .+..++..+...+...++..++. ..|..+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999999999999887653 34566777777777777766655 334333
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.46 E-value=1.3e-06 Score=65.39 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=67.1
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc-------HHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK-------DSVF 83 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~ 83 (504)
+..+...+...|++++|+..|+++.+..|. +...+..+...+...|++++|...++...... +.+ ..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHH
Confidence 455667777777888888888877777654 56677777777777777777777777776543 112 5556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCC
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (504)
..+..++...|++++|.+.|+...+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 667777777777777777777766644
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=1.9e-06 Score=67.75 Aligned_cols=100 Identities=8% Similarity=0.041 Sum_probs=78.1
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|+...+.+. .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777888888888888888888888776 55677788888888888888888888888877653 34667778888
Q ss_pred HHHhcchHHHHHHHHHHhhcCC
Q 043204 124 EMVKESKLEAAHILFLRSCYGW 145 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
.+...|++++|...|++.....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888776543
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=2.1e-06 Score=62.16 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=55.8
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-ccHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCV-NWTQSFNTLL 122 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll 122 (504)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 44555666666666667777776666666554 444555666666666666666666666666554321 0234444455
Q ss_pred HHHHhc-chHHHHHHHHHHhhc
Q 043204 123 KEMVKE-SKLEAAHILFLRSCY 143 (504)
Q Consensus 123 ~~~~~~-~~~~~a~~~~~~~~~ 143 (504)
..+... |++++|.+.+++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 555555 555555555554443
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.44 E-value=4.2e-06 Score=62.30 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCC--------cch
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPC--------VET 440 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~ 440 (504)
.+..+...+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|.+.+++..+.. |+ ..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHHHHH
Confidence 4555666667777777777777776654 12234566666777777777777777777666532 21 124
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043204 441 YNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSS 478 (504)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 478 (504)
|..+..++...|++++|++.|++.++. .||+.+...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 555666777778888888888777753 455544443
No 167
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=5.6e-06 Score=61.59 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHH
Q 043204 368 RVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRG 447 (504)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (504)
..+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34555666677777777777777777654 22345667777777777777777777777777653 2345566777777
Q ss_pred HHccCCHHHHHHHHHHHHHc
Q 043204 448 LCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~ 467 (504)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777743
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=9.4e-06 Score=59.28 Aligned_cols=97 Identities=15% Similarity=-0.013 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHH
Q 043204 367 VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIR 446 (504)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (504)
...+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345555666666777777777777776654 12245566666667777777777777777766653 234556666667
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 043204 447 GLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~~ 466 (504)
++...|++++|.+.+++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777764
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=7.3e-06 Score=61.19 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=79.2
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc---HHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK---DSVFATAI 87 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 87 (504)
+-.+...+...|++++|+..|+.+.+..|+.......+..+..++...|++++|...|+...+.. +.+ ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 44566778889999999999999998877622222577788888999999999999999988765 334 56678888
Q ss_pred HHHHhcCChhHHHHHHHHhhhCC
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~ 110 (504)
.++...|++++|...|+.+.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999887754
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.8e-06 Score=65.26 Aligned_cols=96 Identities=8% Similarity=-0.041 Sum_probs=42.5
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECK---DSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTL 121 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
...+..+...+...|++++|.+.|++..+.. +.+ ...+..+..++...|++++|+..++...+... .+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHH
Confidence 3344444444444444444444444444432 111 33344444444444455555444444443321 123344444
Q ss_pred HHHHHhcchHHHHHHHHHHhh
Q 043204 122 LKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~ 142 (504)
...+...|++++|...|++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555554444
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=3.7e-07 Score=85.37 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=96.3
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+.+.|++++|++.|+++.+..|. +..+|..+..++.+.|++++|.+.+++..+.. +.+..++..+..+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444555677889999999999999998776 78889999999999999999999999999886 66778888999999
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH--HHhcchHHHHHHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE--MVKESKLEAAHILFL 139 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 139 (504)
...|++++|++.|++..+.... +...+..+..+ +.+.|++++|...++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988776432 23344444444 777888888888887
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.2e-05 Score=61.58 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchH
Q 043204 366 TVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN----GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETY 441 (504)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (504)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|.+.+++..+.. +.+...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 4455556666666666777776666666542 344 4556666666777777777777777666642 2244556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 442 NVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 442 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
..+..++...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666777777777777777777643
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=4.9e-06 Score=61.29 Aligned_cols=97 Identities=8% Similarity=-0.062 Sum_probs=74.3
Q ss_pred hcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 043204 46 PVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEM 125 (504)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (504)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.++ .+...+..+...+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 345666777888888888888888888776 56777788888888888888888888888877653 2356777777888
Q ss_pred HhcchHHHHHHHHHHhhcC
Q 043204 126 VKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (504)
...|++++|...|++....
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877643
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=1.3e-05 Score=62.54 Aligned_cols=102 Identities=14% Similarity=-0.013 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HH
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQGC-YPD----RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IV 226 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 226 (504)
++..+...+...|++++|.+.+++..+... .++ ...+..+...+...|++++|...+++........+..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 455666667777777777777766544210 011 345666777778888888888888877544333332222 34
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 227 IYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.+..+...+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6677788888888888888888887653
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=3.2e-05 Score=58.30 Aligned_cols=95 Identities=11% Similarity=-0.055 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043204 116 QSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKG 195 (504)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 195 (504)
..+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++..+... .+...+..+..+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 344444444444444444444444443321 11233445555555555555555555555554321 234455555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 043204 196 LCNDRRLNEATHLLYSMF 213 (504)
Q Consensus 196 ~~~~~~~~~a~~~~~~~~ 213 (504)
+...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555666666666555553
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=8.2e-06 Score=63.65 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=74.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc----hh
Q 043204 333 MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPT----VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN----GE 404 (504)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 404 (504)
++..+...+...|++++|...+++++....-.++ ..++..+...+...|++++|.+.+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555566666666655553332110111 124555666666677777777766665543111111 23
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHHhc----Cc-CCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEMLIR----SY-WPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
.+..+...+...|++++|.+.+++..+. +. ......+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556666777777777777777766543 10 01133455666677777777777777777664
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.0014 Score=57.03 Aligned_cols=165 Identities=8% Similarity=0.032 Sum_probs=85.0
Q ss_pred hcCCH-HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 043204 163 QCRRS-DLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR----------LNEATHLLYSMFWRISQKGSGEDIVIYRTL 231 (504)
Q Consensus 163 ~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (504)
+.|.+ ++|+++++.+...+.. +...|+.--..+...+. +++++.+++.+ .....+ +..+|+.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~----L~~~PK-ny~aW~hR 114 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC----LRVNPK-SYGTWHHR 114 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH----HHHCTT-CHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH----HHhCCC-CHHHHHHH
Confidence 34444 3677777777765321 22333332222222221 45666666666 333222 56666666
Q ss_pred HHHHHhcCc--hhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 232 LFALCDQGK--IQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 232 ~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
..++...++ +++++.+++.+.+.... |...|+.-.-.+...
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-------------------------------------Ny~AW~~R~~vl~~l 157 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-------------------------------------NFHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-------------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-------------------------------------CHHHHHHHHHHHHHh
Confidence 555555553 66666777666665322 455555554445555
Q ss_pred CC-hhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcC--------------CCHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 043204 310 GR-IVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKD--------------GMVDEALEVIEEEMVKGTFVPTVRVYNIL 373 (504)
Q Consensus 310 ~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (504)
|. ++++++.+..+.+..+. |...|+.....+.+. +.++++++.+++++... +-|...|+.+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~ 233 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYH 233 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 55 36666666666665443 555555444333332 33566666666655544 3344444433
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.28 E-value=2.6e-06 Score=62.48 Aligned_cols=88 Identities=8% Similarity=0.021 Sum_probs=47.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAV 100 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (504)
.|++++|+..|+++.+..++-..+..++..+..++...|++++|...|++..+.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665521101144555666666666666666666666666554 444555555666666666666666
Q ss_pred HHHHHhhhC
Q 043204 101 SLFKNLSQF 109 (504)
Q Consensus 101 ~~~~~~~~~ 109 (504)
..|+...+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655543
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=8.6e-06 Score=75.83 Aligned_cols=122 Identities=8% Similarity=-0.038 Sum_probs=78.3
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-------------hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCC
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHN-------------GPVYASMIGILSESNRITEMKEVIDQMKGDSCE 77 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (504)
+..+...+.+.|++++|+..|+++.+..|... + ..+|..+..++.+.|++++|+..+++..+.. +
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY-GLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-cCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 45567778888999999999999988766411 0 3556666666667777777777776666655 4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHH
Q 043204 78 CKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAH 135 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 135 (504)
.+...|..+..+|...|++++|+..|+...+... .+..++..+...+.+.++.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666777777777766665542 22345555555555556555544
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=1e-05 Score=60.45 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCc--CCC----cchHHH
Q 043204 370 YNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSY--WPC----VETYNV 443 (504)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 443 (504)
+..+...+...|++++|...+++..+. .+.+...+..+..+|...|++++|...+++..+... .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444444444554444444433 112333444444444445555555555544444310 001 334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 043204 444 LIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+..++...|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555555554
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=5e-06 Score=65.12 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=75.3
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhc--------CCC-------CCcchhcHHHHHHHHhccCChhHHHHHHHHhhcC
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEK--------YPN-------YRHNGPVYASMIGILSESNRITEMKEVIDQMKGD 74 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (504)
.+......+.+.|++++|+..|+++.+. .|. -..+...|..+..++.+.|++++|+..++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3556678888999999999999999886 111 0013456777778888888888888888888777
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 043204 75 SCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (504)
. +.+...|..+..++...|++++|...|+...+.+
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 6 5667777888888888888888888888777654
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=8.9e-06 Score=73.20 Aligned_cols=122 Identities=7% Similarity=-0.048 Sum_probs=72.5
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCC------------C-CcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCC
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPN------------Y-RHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCE 77 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (504)
+..+...+.+.|++++|+..|+++.+..|. . ..+..+|..+..++.+.|++++|++.+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 455677788888999999988888873111 0 0134456666666666666666666666666654 4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHH
Q 043204 78 CKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAA 134 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 134 (504)
.+...+..+..+|...|++++|+..|++..+... .+...+..+...+...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666655432 2234444444444444444444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=1.6e-06 Score=63.66 Aligned_cols=106 Identities=9% Similarity=-0.039 Sum_probs=84.5
Q ss_pred ccCChhHHHHHHHHhhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHH
Q 043204 57 ESNRITEMKEVIDQMKGDS--CECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAA 134 (504)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 134 (504)
..|++++|+..|++..+.+ -+.+..++..+..+|...|++++|+..|++..+.++. +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999874 1345567899999999999999999999999887643 477888999999999999999
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 135 HILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
...|++.....+..|+...|...+..|..
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999988766666777777777766654
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1e-06 Score=82.05 Aligned_cols=96 Identities=11% Similarity=-0.041 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043204 115 TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMK 194 (504)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 194 (504)
...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++..+... -+...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3455666666666666666666666665432 22455666667777777777777777777766532 24455666666
Q ss_pred HHHhcCCHHHHH-HHHHHHH
Q 043204 195 GLCNDRRLNEAT-HLLYSMF 213 (504)
Q Consensus 195 ~~~~~~~~~~a~-~~~~~~~ 213 (504)
++.+.++.+++. ..+..|+
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 666666666555 3444443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=4.3e-05 Score=56.89 Aligned_cols=95 Identities=8% Similarity=-0.073 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccH---HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCcc--HHHHHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKD---SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNW--TQSFNTLL 122 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll 122 (504)
+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+...+...... ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3344556666677777777776666543 2222 3555666666666666666666666655432111 33445555
Q ss_pred HHHHhcchHHHHHHHHHHhhc
Q 043204 123 KEMVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~ 143 (504)
..+...|++++|...|+++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666666655544
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.8e-06 Score=80.68 Aligned_cols=125 Identities=6% Similarity=-0.040 Sum_probs=96.3
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
.+..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.+. .+..++..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34455566778899999999999998876 56678899999999999999999999999988763 45778888999999
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHH--HhhcCCHHHHHHHHH
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV--LCQCRRSDLALHVFQ 175 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 175 (504)
..|++++|...|++.....+..+. .+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998765333333 44444444 788899999999988
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=2.6e-05 Score=72.45 Aligned_cols=123 Identities=8% Similarity=-0.011 Sum_probs=56.8
Q ss_pred ccCChhHHHHHHHHhhcC-----CC-Ccc-HHHHHHHHHHHHhcCChhHHHHHHHHhhh-------CCCCccHHHHHHHH
Q 043204 57 ESNRITEMKEVIDQMKGD-----SC-ECK-DSVFATAIRTYARAGQLNEAVSLFKNLSQ-------FNCVNWTQSFNTLL 122 (504)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll 122 (504)
.+|++++|..++++..+. |. -|+ ..+++.|..+|...|++++|+.++++..+ .+.+....+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555544421 10 111 13356666666666666666666555432 11122233455555
Q ss_pred HHHHhcchHHHHHHHHHHhhc-----CCCCcch-HHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 043204 123 KEMVKESKLEAAHILFLRSCY-----GWEVKSR-IQSLNLLMDVLCQCRRSDLALHVFQEMDF 179 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (504)
..|...|++++|+.++++... -+...|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544431 0111222 22333444444555555555555555543
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=2.2e-05 Score=59.63 Aligned_cols=95 Identities=14% Similarity=0.004 Sum_probs=60.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc----c-----hhcHHHHHHHHhccCChhHHHHHHHHhhcC-------C
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRH----N-----GPVYASMIGILSESNRITEMKEVIDQMKGD-------S 75 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 75 (504)
......+.+.|++++|+..|+++++..|.... + ...|+.+..++.+.|++++|+..+++.++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 44566777899999999999999998775211 1 125666666666666666666666666554 3
Q ss_pred CCccHHHH----HHHHHHHHhcCChhHHHHHHHHhh
Q 043204 76 CECKDSVF----ATAIRTYARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 76 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 107 (504)
+.+...| .....++...|++++|+..|+...
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445 555555555666666666555544
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.3e-06 Score=63.38 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=68.6
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc------HH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK------DS 81 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 81 (504)
...+..+...+...|++++|+..|+++.+..|. +...|..+..++...|++++|.+.+++..+.. +.+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 345666777788888888888888888888766 67778888888888888888888888888765 333 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHh
Q 043204 82 VFATAIRTYARAGQLNEAVSLFKNL 106 (504)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (504)
.+..+..++...|+++.|...++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5566666666666666665555443
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=1.7e-05 Score=57.83 Aligned_cols=81 Identities=6% Similarity=-0.069 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 043204 25 LTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFK 104 (504)
Q Consensus 25 ~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (504)
++|+..|+++.+..|. +...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|+
T Consensus 2 ~~a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4678889999888776 78888999999999999999999999998876 5667788889999999999999999999
Q ss_pred HhhhC
Q 043204 105 NLSQF 109 (504)
Q Consensus 105 ~~~~~ 109 (504)
...+.
T Consensus 78 ~al~~ 82 (115)
T 2kat_A 78 SGLAA 82 (115)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=7.8e-06 Score=72.73 Aligned_cols=146 Identities=7% Similarity=-0.040 Sum_probs=69.3
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+.+.|++++|+..|+++....|. .. .+...++..++...+. ...|..+..+|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~----~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGD----DF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCH----HH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcc----ch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 344556666788888888888888877542 11 1122233333322221 13566677777
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHH-HhhcCCHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV-LCQCRRSDL 169 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 169 (504)
.+.|++++|+..|+...+.+ +.+...|..+..+|...|++++|...|++.....+. +...+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776654 234566777777777777777777777777643221 23334444444 233456667
Q ss_pred HHHHHHHhhhC
Q 043204 170 ALHVFQEMDFQ 180 (504)
Q Consensus 170 a~~~~~~~~~~ 180 (504)
+.+.|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777654
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.6e-05 Score=70.70 Aligned_cols=114 Identities=12% Similarity=-0.016 Sum_probs=60.7
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHH
Q 043204 330 SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGIL 409 (504)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 409 (504)
....+..+...+.+.|++++|...|++++... |+... +...++.+++...+ ....|..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAV-----------KNPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHH-----------HHHHHHHH
Confidence 45567777888888899999999888866543 44331 11111112111110 01144445
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 410 VDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 410 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555532 2234455555555555555555555555554
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.04 E-value=4.3e-05 Score=59.69 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 043204 403 GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDIS 474 (504)
Q Consensus 403 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 474 (504)
...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 3466677777777788888888777777753 334566777777777888888888888777754 45544
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.0004 Score=66.17 Aligned_cols=134 Identities=7% Similarity=-0.047 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCC----------hhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 23 SPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNR----------ITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 23 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
..++|++.++.+...+|. +..+|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-.-++.+
T Consensus 44 ~~eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 345677888888877776 66677766666666665 777777777777766 5566677777777777
Q ss_pred cC--ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc-hHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 93 AG--QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES-KLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 93 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
.+ +++++++.++.+.+.+.. +..+|+.-...+.+.| .++++++.++++.... +-+..+|+.....+.+
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHh
Confidence 77 557777777777776633 3556666666666666 6667777766665442 2244455554444433
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=6.3e-05 Score=67.65 Aligned_cols=90 Identities=13% Similarity=-0.061 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043204 115 TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMK 194 (504)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 194 (504)
..+|..+...|.+.|++++|+..+++..... +.+...|..+..+|...|++++|.+.|++..+... .+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3455556666666666666666666665432 12344556666666666666666666666665421 14445555555
Q ss_pred HHHhcCCHHHHHH
Q 043204 195 GLCNDRRLNEATH 207 (504)
Q Consensus 195 ~~~~~~~~~~a~~ 207 (504)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.95 E-value=1.7e-05 Score=60.04 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=71.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCCh----------hHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRI----------TEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
..+.+.+++|++.++...+..|+ +...|..+..++...+++ ++|+..|++..+.. +.+..+|..+.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 44567789999999999999888 899999999999888775 48888888888887 66677888888
Q ss_pred HHHHhcC-----------ChhHHHHHHHHhhhCC
Q 043204 88 RTYARAG-----------QLNEAVSLFKNLSQFN 110 (504)
Q Consensus 88 ~~~~~~~-----------~~~~a~~~~~~~~~~~ 110 (504)
.+|...| ++++|++.|++..+.+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8887764 6777777777766654
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=7.3e-05 Score=51.45 Aligned_cols=76 Identities=14% Similarity=0.025 Sum_probs=38.8
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
+..+...+...|++++|+..|+++.+..|. +..++..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 334445555555555555555555555443 44455555555555555555555555555443 33334444444443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=0.00028 Score=65.53 Aligned_cols=131 Identities=8% Similarity=-0.045 Sum_probs=97.3
Q ss_pred HHHhcchHHHHHHHHHHhhcC-----CCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC-----CC-CCC-HhhHH
Q 043204 124 EMVKESKLEAAHILFLRSCYG-----WEVKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ-----GC-YPD-RESYH 190 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~ 190 (504)
.+...|++++|+.++++.... +...| ...+++.|...|...|++++|+.++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355779999999999877531 12233 3667999999999999999999999887642 21 222 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhh-CCCC-cC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 191 ILMKGLCNDRRLNEATHLLYSMFWRISQ-KGSG-ED-IVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.|...|...|++++|+.++++.++.... .|.. |+ ..+.+.+..++...+.+++|...+..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988654332 2322 22 345567778888899999999999998764
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=0.00022 Score=54.18 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc-------------hhhHHHHHHHHhhcCcHHHHHHHHHHHHhc---
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN-------------GETYGILVDGLCRDGRFLEASRVLEEMLIR--- 432 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 432 (504)
.+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3445556677778888888888887764 232 227888888899999999999999988875
Q ss_pred --CcCCC-cchH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 433 --SYWPC-VETY----NVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 433 --~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
.+.|+ ...| .....++...|++++|++.|++..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11354 4567 7888889999999999999999874
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.86 E-value=7.1e-05 Score=54.40 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHh
Q 043204 62 TEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRS 141 (504)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (504)
++|.+.|++..+.. +.+...+..+...+...|++++|+..|+...+.+. .+...+..+...+...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777777765 56677788888888888888888888888776653 33567777778888888888888888776
Q ss_pred hc
Q 043204 142 CY 143 (504)
Q Consensus 142 ~~ 143 (504)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.79 E-value=0.0017 Score=61.88 Aligned_cols=136 Identities=8% Similarity=-0.058 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCC--CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-ChHHHHH
Q 043204 312 IVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDG--MVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG-NSAVAVM 388 (504)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~ 388 (504)
+++++..++.+.+..++ +..+|..-...+.+.+ +++++++.+++++... +-+...|+.-...+.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHH
Confidence 56666666666665443 5555555555555566 4566666666644443 335555655555555556 5666666
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhhc--------------CcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCC
Q 043204 389 YLKKMSKQVGCVANGETYGILVDGLCRD--------------GRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGK 453 (504)
Q Consensus 389 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 453 (504)
.++++.+. ..-|...|+.....+.+. +.++++.+.+++..... +-|...|..+-..+.+.++
T Consensus 166 ~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 166 FTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 66666543 122444454444443332 34556666666555543 2344555555545544444
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.9e-05 Score=56.98 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=52.2
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (504)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.|+...+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45667777888888888888888888888765 5567778888888888888888888888877655
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.0013 Score=49.44 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=37.4
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh----cCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc--
Q 043204 377 LCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCR----DGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS-- 450 (504)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 450 (504)
|...+..++|.+.|++..+. + +...+..|...|.. .++.++|.+.|++..+.| ++..+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 33333444444444444432 1 23333444444443 444555555555444443 33344444444444
Q ss_pred --cCCHHHHHHHHHHHHHcC
Q 043204 451 --IGKQYEAVMWLEEMISQA 468 (504)
Q Consensus 451 --~g~~~~a~~~~~~~~~~~ 468 (504)
.+++++|.++|++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554443
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.001 Score=49.93 Aligned_cols=112 Identities=12% Similarity=-0.071 Sum_probs=88.5
Q ss_pred CChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc----cCCHHH
Q 043204 381 GNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS----IGKQYE 456 (504)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 456 (504)
+++++|.+.|++..+. + .|+. . |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4678899999999886 5 2332 2 7788888889999999999999976 67788888888887 899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhc---CCCchhHHHHHHHHhhcCC
Q 043204 457 AVMWLEEMISQAKLPDISVWSSLVASVCC---NTADLNVCRKTLEQLSSCS 504 (504)
Q Consensus 457 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~ 504 (504)
|+++|++..+.| +......|-..|.. ..+|.++|..++++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999875 45555556555554 1456999999999887654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00045 Score=47.33 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=39.1
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (504)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...|++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555666666666666666666666554 3445556666666666666666666666655543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.00024 Score=49.99 Aligned_cols=63 Identities=5% Similarity=0.047 Sum_probs=36.1
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (504)
+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555556666666666666666655554 3444555555666666666666666655544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.00035 Score=49.06 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=47.0
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 77 ECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
+.+...+..+..++...|++++|+..|+...+.+.. +..+|..+..+|...|++++|...|++..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777778888888888888888887766532 35567777777778888888877777665
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00013 Score=51.17 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=45.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchh-cHHHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGP-VYASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
....+...|++++|+..|+++.+..|. +.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677778888888888888877665 666 77777778888888888888888877765
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.00037 Score=52.84 Aligned_cols=85 Identities=7% Similarity=0.049 Sum_probs=57.8
Q ss_pred hccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChh----------HHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 043204 56 SESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLN----------EAVSLFKNLSQFNCVNWTQSFNTLLKEM 125 (504)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (504)
.+.+.+++|.+.++...+.. +.+...|..+..++...++++ +|+..|++..+.++. ...+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34567788888888888877 677788888888888777654 777777777666532 355666677777
Q ss_pred Hhcc-----------hHHHHHHHHHHhh
Q 043204 126 VKES-----------KLEAAHILFLRSC 142 (504)
Q Consensus 126 ~~~~-----------~~~~a~~~~~~~~ 142 (504)
...| ++++|+..|++..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 6654 4555555555544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.0024 Score=55.91 Aligned_cols=75 Identities=9% Similarity=-0.106 Sum_probs=50.3
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043204 112 VNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHI 191 (504)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 191 (504)
+.+..+|..+...+...|++++|...++++..-. |+...|..+...+.-.|++++|.+.|++.... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 3445666666666666677777777777776542 56666666677777778888888877777665 456566543
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.01 Score=52.05 Aligned_cols=74 Identities=14% Similarity=-0.024 Sum_probs=58.1
Q ss_pred CCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043204 400 VANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWS 477 (504)
Q Consensus 400 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 477 (504)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566777777777777799999999999988875 77767777777888889999999999888854 57776654
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.19 E-value=1.5e-06 Score=77.09 Aligned_cols=217 Identities=13% Similarity=0.092 Sum_probs=135.1
Q ss_pred CCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHH
Q 043204 4 RWPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVF 83 (504)
Q Consensus 4 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (504)
+...+..|..|..+..+.+...+|++.|=++ + |+..|..++.+..+.|.+++-...+....+.. .++.+=
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ID 119 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE 119 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----S---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTT
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHHHhC-----C---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccH
Confidence 3455677888999999999988888766322 2 67788899999999999999999888777653 344445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC------------------
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW------------------ 145 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------ 145 (504)
+.|+-+|++.++..+.++.+. .|+..-...+.+-|...|.++.|.-+|..+..-.
T Consensus 120 teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 678889999888776554432 1222233567777778888887777776543110
Q ss_pred -CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-Cc
Q 043204 146 -EVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS-GE 223 (504)
Q Consensus 146 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 223 (504)
.-..++.||-.+-.+|...+.+.-|.-.--.+.-. || -...++..|-..|.+++-..+++.. . |. ..
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag----l--glErA 261 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA----L--GLERA 261 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH----T--TSTTC
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH----h--CCCch
Confidence 01123445666666666666655554443333321 11 1233455566677777777776654 2 22 23
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 224 DIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 224 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
....|+.|.-.|++- ++++..+.++
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 566777777777764 4444444443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.15 E-value=0.0018 Score=59.06 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh-------CCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 82 VFATAIRTYARAGQLNEAVSLFKNLSQ-------FNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
+++.+..+|...|++++|+.++++..+ .+.+....+++.|...|...|++++|+.++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 355555555556666655555554432 1112223455666666666666666666665544
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.01 E-value=0.0036 Score=57.23 Aligned_cols=60 Identities=12% Similarity=-0.037 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh-------CCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQ-------FNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
++.+..+|...|++++|+.++++..+ ...+....+++.|...|...|++++|+.++++..
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555555555555555555554331 1111223345555555555566555555555543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.0035 Score=57.19 Aligned_cols=87 Identities=9% Similarity=-0.158 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHhhc-----CCCCcch-HHHHHHHHHHHhhcCCHHHHHHHHHHhhh-----CCC-CCC-HhhHHHHHHH
Q 043204 129 SKLEAAHILFLRSCY-----GWEVKSR-IQSLNLLMDVLCQCRRSDLALHVFQEMDF-----QGC-YPD-RESYHILMKG 195 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~l~~~ 195 (504)
|++++|+.++++... -....|+ ..+++.|..+|...|++++|+.++++..+ .|. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455666665555432 1112233 45677777778778888888777776654 121 222 3557777778
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 043204 196 LCNDRRLNEATHLLYSMFWR 215 (504)
Q Consensus 196 ~~~~~~~~~a~~~~~~~~~~ 215 (504)
|...|++++|+.++++.++.
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 88888888888888777544
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.98 E-value=0.00022 Score=63.81 Aligned_cols=406 Identities=11% Similarity=0.028 Sum_probs=234.6
Q ss_pred CCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHH
Q 043204 4 RWPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVF 83 (504)
Q Consensus 4 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (504)
+.-|+..|..++.+..+.|.+++-+..+.-+++.. .+...=+.|+-+|++.++..+..+.+. .||..-.
T Consensus 79 kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~i 147 (624)
T 3lvg_A 79 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHI 147 (624)
T ss_dssp CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCT
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccH
Confidence 45678889999999999999999999887776652 244555789999999999876544332 4666667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCC--------------------CCccHHHHHHHHHHHHhcchHHHHHHHHHHhhc
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFN--------------------CVNWTQSFNTLLKEMVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (504)
..+.+-|...|.++.|.-+|..+.... -..++.||..+-.+|...+++.-|...--.+.-
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 788889999999999988887653211 123456788888899999998888766655554
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc
Q 043204 144 GWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE 223 (504)
Q Consensus 144 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (504)
..+.- ..++..|-..|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++... .+-+++.
T Consensus 228 hadeL------~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~---sriNipK 296 (624)
T 3lvg_A 228 HADEL------EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFW---SRVNIPK 296 (624)
T ss_dssp CSSCC------SGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSS---SSSCCTT
T ss_pred cHHHH------HHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHH---HhccHHH
Confidence 33333 336677899999999999999877432 34677888888877765 4455444443321 1111111
Q ss_pred ------CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChh
Q 043204 224 ------DIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLA 297 (504)
Q Consensus 224 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (504)
....|..++-.|.+-.+++.|.... .. .|+...-.........+..+.+.-.+.+.-.++. .+.
T Consensus 297 viracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~---h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e----~P~ 366 (624)
T 3lvg_A 297 VLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MN---HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPL 366 (624)
T ss_dssp THHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TS---CHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS----CCT
T ss_pred HHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---Hh---CChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh----ChH
Confidence 2344666666666666666554322 11 1222223333344555556666555555544443 334
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC--------CC--CcchhhHHHHHHHHhcCCCHHHHHH------------HHH
Q 043204 298 SYSAMAIDLYNEGRIVEGDKVLDEMRTK--------GF--WPSLVMYEAKLAALFKDGMVDEALE------------VIE 355 (504)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~--~~~~~~~~~l~~~~~~~~~~~~a~~------------~~~ 355 (504)
..+.++..+...=+...+.++|++.-.. .+ .-+..+-.++-+.|....+++.-.. +-+
T Consensus 367 lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~ 446 (624)
T 3lvg_A 367 LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQ 446 (624)
T ss_dssp TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHH
T ss_pred HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHH
Confidence 4666666666665666666655532210 00 1122223344445555555443222 112
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcC
Q 043204 356 EEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYW 435 (504)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (504)
+ +++. +-...-..-...|.+++++++++.+.++ ...|.-.|...+..|+.+-|.++++-..+.|
T Consensus 447 r-LEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk----------DklykDAietAa~S~~~elaeeLL~yFv~~g-- 510 (624)
T 3lvg_A 447 R-LEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK----------DSLYKDAMQYASESKDTELAEELLQWFLQEE-- 510 (624)
T ss_dssp H-HHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST----------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC--
T ss_pred H-HhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh----------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 1 2222 1122222233345666666666543322 1223333444555666666666666666554
Q ss_pred CCcchHHHHHHHHHccCCHHHHH
Q 043204 436 PCVETYNVLIRGLCSIGKQYEAV 458 (504)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~a~ 458 (504)
+..+|...+-.|...=+++-++
T Consensus 511 -~~EcF~a~LytCYdLlrpDvVl 532 (624)
T 3lvg_A 511 -KRECFGACLFTCYDLLRPDVVL 532 (624)
T ss_dssp -STHHHHHHHHHTSSSSSCHHHH
T ss_pred -chHHHHHHHHHHhhccChHHHH
Confidence 4445555555554444444433
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.96 E-value=0.0018 Score=45.19 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHH-HHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDS-VFATAIRTYARAGQLNEAVSLFKNLSQFNC 111 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 111 (504)
....+...|++++|.+.|+...+.. +.+.. .+..+..++...|++++|.+.|+...+.+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4556677788888888888887765 45556 777778888888888888888888776553
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.95 E-value=0.036 Score=46.49 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc-----CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh-cCCHH
Q 043204 130 KLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC-----RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN-DRRLN 203 (504)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~ 203 (504)
....|...+++..+-.+--.+-..|..+...|... |+.++|.+.|++..+.+..-+..++......++. .|+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34667777777765432222355778888888884 8888888888888876432236667777777777 48888
Q ss_pred HHHHHHHHHHHHHhhCCCC--cCHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSG--EDIVIYRT 230 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~--~~~~~~~~ 230 (504)
.+.+.+++. ...... |+....+.
T Consensus 258 ~a~~~L~kA----L~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRA----LAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHH----HHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHH----HcCCCCCCCChhHHHH
Confidence 888888888 555555 55444433
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0079 Score=54.95 Aligned_cols=95 Identities=14% Similarity=-0.007 Sum_probs=69.0
Q ss_pred HHHHHhcchHHHHHHHHHHhhcCC-----CCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC-----C-CCCC-Hhh
Q 043204 122 LKEMVKESKLEAAHILFLRSCYGW-----EVKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ-----G-CYPD-RES 188 (504)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~ 188 (504)
+..+.+.|++++|+.++++..... ...| ...+++.|...|...|++++|+.++++..+- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667788888888888776421 1222 3567888888999999999999988877541 2 1222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRI 216 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 216 (504)
++.|...|...|++++|+.++++.++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8888888999999999999998886543
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.89 E-value=0.0039 Score=42.72 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
.++|..+|+++++.+|. ++.++..+...+.+.|++++|+..|+.+.+..
T Consensus 25 ~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666666666666555 55556566666666666666666666666554
No 221
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.84 E-value=0.46 Score=47.37 Aligned_cols=266 Identities=13% Similarity=0.065 Sum_probs=134.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhhCC--CCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC--C----Ccch--hhh
Q 043204 196 LCNDRRLNEATHLLYSMFWRISQKG--SGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLK--A----PKSR--RHR 265 (504)
Q Consensus 196 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~----~~~~--~~~ 265 (504)
....|+.++++.+++.. ...+ -.+....-..+.-+....|..+++..++...+...-. . +... ...
T Consensus 384 lIh~g~~~~gl~~L~~y----L~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPY----LPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHTSSCTTTHHHHHTTT----STTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHh----ccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 45667777777776655 2211 1122223333334455555555677777776654210 0 0011 111
Q ss_pred hhccccCCCCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc
Q 043204 266 IDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYS--AMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK 343 (504)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (504)
-+..++...++. ++...+..++.... +...... .+...+...|+.+....++..+.+.. .-+..-...+.-++..
T Consensus 460 GLGla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 460 GIGLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 123334444443 44455555444311 0111112 22223345577777777777776642 1122222333334456
Q ss_pred CCCHHHHHHHHHHHHhcCCCCccHHHHH--HHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHH
Q 043204 344 DGMVDEALEVIEEEMVKGTFVPTVRVYN--ILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLE 421 (504)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 421 (504)
.|+.+.+..+++. +... ..|....-. .+.-+|+..|+.....++++.+.+. ...+..-...+.-++...|+.+.
T Consensus 537 ~g~~e~~~~li~~-L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 537 YGRQELADDLITK-MLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTCGGGGHHHHHH-HHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred CCChHHHHHHHHH-HHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 7888888877776 4432 122222222 2334567788887777788888764 22233333333344555677777
Q ss_pred HHHHHHHHHhcCcCCCcchHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHH
Q 043204 422 ASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQ-YEAVMWLEEMISQAKLPDISVW 476 (504)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~ 476 (504)
+.++++.+.+.+ .|....-..+.-+....|+. .+|+..+..+.. .+|..+-
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 777777666543 34444334444455555554 577888888863 3454443
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.68 E-value=0.011 Score=40.50 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=51.5
Q ss_pred chhcHHHHHHHHhccCC---hhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 043204 44 NGPVYASMIGILSESNR---ITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCV 112 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (504)
|...+..+..++...++ .++|..+|++..+.+ +.+......+...+.+.|++++|+..|+.+.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66677777777754444 688888888888877 667777788888888888888888888888776543
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.55 E-value=0.13 Score=37.13 Aligned_cols=137 Identities=17% Similarity=0.111 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 043204 310 GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMY 389 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (504)
|..++..++..+..... +..-+|.+|--....-+-+-..++++. +-+. -| ...+|+.......
T Consensus 21 G~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~-IGki---FD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDK-IGSY---FD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHH-HGGG---SC----------GGGCSCTHHHHHH
T ss_pred hhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHH-Hhhh---cC----------cHhhhcHHHHHHH
Confidence 66666666666665542 444555555555555555555555544 2221 11 1234455555444
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043204 390 LKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAK 469 (504)
Q Consensus 390 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (504)
+-.+- .+.......++.....|.-+.-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus 84 ~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44332 2344556677788888888888888888654 3467888888888899999999999999999888876
Q ss_pred C
Q 043204 470 L 470 (504)
Q Consensus 470 ~ 470 (504)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.22 Score=38.34 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=19.9
Q ss_pred ccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 043204 57 ESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNL 106 (504)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (504)
+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444433 12334444444444444444444444443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.37 E-value=0.034 Score=41.62 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhcCCCC--chhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 365 PTVRVYNILLKGLCDAG---NSAVAVMYLKKMSKQVGCVA--NGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 365 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
++..+...+..++++.+ +.++++.+++.+.+. . .| +...+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44444444555555554 334555555555544 2 12 122223333444555555555555555554
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.1 Score=52.60 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=71.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 043204 49 ASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE 128 (504)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (504)
..++..+.+.|.+++|.++.+. |. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5556666666666666654421 11 1123345567777777665433 2345667777777777
Q ss_pred chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043204 129 SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHL 208 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 208 (504)
++++.|.+.|.++.. |..+...+...|+.+...++-+.....| -++....++.+.|++++|.++
T Consensus 695 ~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp TCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH
Confidence 777777777766631 2344444555666665555554444432 133344445556666666666
Q ss_pred HHHH
Q 043204 209 LYSM 212 (504)
Q Consensus 209 ~~~~ 212 (504)
+.++
T Consensus 759 ~~~~ 762 (814)
T 3mkq_A 759 LIKS 762 (814)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5544
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.33 E-value=0.041 Score=55.43 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 043204 300 SAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD 379 (504)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (504)
..++..+.+.|..+.|.++.+.-. .-.......|+++.|.++.+. ..+...|..+...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~-------~~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD-------ESAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT-------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh-------hCcHhHHHHHHHHHHH
Confidence 455555556677776665542111 112334566788888776553 2456788888888888
Q ss_pred cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHH
Q 043204 380 AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVM 459 (504)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 459 (504)
.|+++.|.+.|..+.. |..+...|...|+.+...++.+.....| -++....+|.+.|++++|++
T Consensus 694 ~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp TTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHH
Confidence 8888888888887642 3445555555666666555555555443 23334444555666666666
Q ss_pred HHHHH
Q 043204 460 WLEEM 464 (504)
Q Consensus 460 ~~~~~ 464 (504)
++.++
T Consensus 758 ~~~~~ 762 (814)
T 3mkq_A 758 LLIKS 762 (814)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 65554
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.30 E-value=1 Score=44.93 Aligned_cols=259 Identities=10% Similarity=0.059 Sum_probs=126.7
Q ss_pred HHhcCchhHHHHHHHHHHHcCCCCC-cchhhhhhccccCCCCChHHHHHHHHHHHHcCC-------CCChhhHHHHHHHH
Q 043204 235 LCDQGKIQDAMQILEKILRKGLKAP-KSRRHRIDLCPCNDGEDIEGAKSLINEALIRGG-------IPSLASYSAMAIDL 306 (504)
Q Consensus 235 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~ 306 (504)
....|+.++++.++...+..+.... ....-.++.-.....|..+.+..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4445666666666654433110001 111222222222333433456776666654321 01111122222223
Q ss_pred HhcCC-hhHHHHHHHHHHHCCCCcch--hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHH--HHHhcC
Q 043204 307 YNEGR-IVEGDKVLDEMRTKGFWPSL--VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLK--GLCDAG 381 (504)
Q Consensus 307 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 381 (504)
+-.|. -+++...+..+....- +.. ..--+|...+.-.|+.+....++..++... +..+...+.- ++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhhCC
Confidence 22232 2345555555554321 111 111233444566778777777777634321 2223333333 344678
Q ss_pred ChHHHHHHHHHHHHhcCCCCchhh--HHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHH
Q 043204 382 NSAVAVMYLKKMSKQVGCVANGET--YGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVM 459 (504)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 459 (504)
+.+.+..+++.+... ..|.... -.++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 888888888888753 2222222 1234556788889887777888887642 2223333333335555677777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
+++.+.+.+ .|....-..+.-+....|.-..++..++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777665543 344433333333333344325677777777653
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.26 E-value=0.035 Score=41.57 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=12.3
Q ss_pred ccHHHHHHHHHHHHhcC---ChhHHHHHHHHhhh
Q 043204 78 CKDSVFATAIRTYARAG---QLNEAVSLFKNLSQ 108 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 108 (504)
++..+...+.-++++++ ++++++.+|+.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~ 63 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP 63 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 33333333334444433 33344444444433
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.04 E-value=0.12 Score=38.17 Aligned_cols=114 Identities=7% Similarity=-0.099 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhcCCCCchh-hHHHHHHH------HhhcCcHHHHHHHHHHHHh
Q 043204 365 PTVRVYNILLKGLCDAGNS------AVAVMYLKKMSKQVGCVANGE-TYGILVDG------LCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 431 (504)
-|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+.. +...+++++|.++|+.+++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556777777666667777 7778888887764 556532 12221111 2344899999999999977
Q ss_pred cCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043204 432 RSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVAS 482 (504)
Q Consensus 432 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 482 (504)
..-.. ...|-....--.+.|+.++|.+++.+....+-+ +...+...++.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 53233 566666666667899999999999999966533 34555666665
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.94 E-value=0.053 Score=38.00 Aligned_cols=64 Identities=16% Similarity=0.045 Sum_probs=33.2
Q ss_pred hcHHHHHHHHhccCChhHHHHHHHHhhcCC------CCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 043204 46 PVYASMIGILSESNRITEMKEVIDQMKGDS------CECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (504)
..+..+...+.+.+++..|..+|+...+.. -.+...++..+..++.+.|+++.|...+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334445555555555555555555544310 1234445555666666666666666666655543
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.92 E-value=0.05 Score=38.09 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcC-----CCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSKQVG-----CVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
-+..+...+...|++..|...|+...+... -.+...++..|..+|.+.|+++.|...++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455555566666666666665554310 012234455555555555555555555555554
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.90 E-value=0.076 Score=39.23 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=71.1
Q ss_pred CCCCchHHHHHHHhcCCh------hHHHHHHHHHHhcCCCCCcchhcHHHHHHH------HhccCChhHHHHHHHHhhcC
Q 043204 7 RLLTPTYLSQIIKKQKSP------LTALKIFKEAKEKYPNYRHNGPVYASMIGI------LSESNRITEMKEVIDQMKGD 74 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~ 74 (504)
|..+|-..+..+-+.|++ ++.+++|+++....|.-+ ...|...+.. +...++.++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444566666777777888 888899998888755321 1122222211 22347888888888888765
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCc
Q 043204 75 SCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVN 113 (504)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (504)
+ +--...|......-.+.|+...|.+++......+..|
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3 3336667777777788899999999998888887766
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.45 Score=36.60 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=93.9
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 166 (504)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34556789999999998776 3467899999999999999999999998852 2556666777899
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHH
Q 043204 167 SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
.++..++-+.....| -++.....+.-.|+++++.++|.+. |..|.. +......|..+.|.+
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~-------~r~~eA------~~~A~t~g~~~~a~~ 136 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG-------GSLPLA------YAVAKANGDEAAASA 136 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT-------TCHHHH------HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC-------CChHHH------HHHHHHcCcHHHHHH
Confidence 888877766665543 2666777778889999999998644 222211 111222466777877
Q ss_pred HHHHH
Q 043204 247 ILEKI 251 (504)
Q Consensus 247 ~~~~~ 251 (504)
+.+++
T Consensus 137 ~~~~~ 141 (177)
T 3mkq_B 137 FLEQA 141 (177)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77665
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.79 E-value=0.052 Score=45.57 Aligned_cols=91 Identities=8% Similarity=0.128 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhc-----cCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc-CChh
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGILSE-----SNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA-GQLN 97 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 97 (504)
...|...++++.+.+|.. .+...|..+...|.. .|+.++|.+.|++..+.+..-+..++......+++. |+.+
T Consensus 179 l~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 456788888888886642 245678888888888 489999999999988876222477777778888774 8899
Q ss_pred HHHHHHHHhhhCCCC--ccH
Q 043204 98 EAVSLFKNLSQFNCV--NWT 115 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~--~~~ 115 (504)
.+.+.+++.....+. |+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHcCCCCCCCCh
Confidence 999999988887766 653
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=1.7 Score=39.82 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhC--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC--H
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQ--GCYPD---RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED--I 225 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 225 (504)
....|...|...|++.+|.+++..+... |.-.. ...+...++.|...+++.+|..++.++..........|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3455777788888888888888887642 21111 134566677888888999988888876433333333333 2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 226 VIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
..+...+..+...+++.+|.+.|.++..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3456666777777888888877777654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.92 E-value=0.29 Score=35.18 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=6.9
Q ss_pred HHhcCChhHHHHHHHHhh
Q 043204 90 YARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~ 107 (504)
+.+.|++++|.+.++.+.
T Consensus 84 ~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 333333333333333333
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.60 E-value=0.35 Score=34.78 Aligned_cols=86 Identities=14% Similarity=0.032 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHH---HHHHHHHHHhcCcCC--CcchHHHHHHHHHccCCHHHH
Q 043204 383 SAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLE---ASRVLEEMLIRSYWP--CVETYNVLIRGLCSIGKQYEA 457 (504)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 457 (504)
...+.+-|...... +. ++..+-..+..++++..+... +..++++....+ .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33444445544443 32 555555556666666665544 666666666543 12 233344455577777777777
Q ss_pred HHHHHHHHHcCCCCCH
Q 043204 458 VMWLEEMISQAKLPDI 473 (504)
Q Consensus 458 ~~~~~~~~~~~~~p~~ 473 (504)
.++++.+++. .|+.
T Consensus 94 ~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHh--CCCC
Confidence 7777777743 4544
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.45 E-value=2.3 Score=38.15 Aligned_cols=75 Identities=12% Similarity=-0.030 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHHHHHHH
Q 043204 406 YGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI-----SQAKLPDISVWSSLV 480 (504)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~~ll 480 (504)
...++..+...|++++|...++.+.... +.+...|..++.++.+.|+..+|++.|++.. +.|+.|+..+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3556777888999999999999888753 4567789999999999999999999998876 359999887655444
Q ss_pred H
Q 043204 481 A 481 (504)
Q Consensus 481 ~ 481 (504)
.
T Consensus 253 ~ 253 (388)
T 2ff4_A 253 R 253 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.10 E-value=1.2 Score=32.34 Aligned_cols=140 Identities=12% Similarity=0.127 Sum_probs=89.1
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
.-.|..++..++..+..... +..-||-+|--....-+-+-..++++.+..-.++ ..+|+....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 44577777777777665532 1334455555555555666666666666443222 234555555
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 043204 171 LHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEK 250 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (504)
...+-.+- .+...+...+......|+-|+-.+++..+ .. ..+|++...-.+..+|.+.|+..++.+++.+
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~----l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREI----LK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHH----C---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHH----hc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 55554443 24455666777788888888888887764 22 4566777888888888888888888888888
Q ss_pred HHHcCCC
Q 043204 251 ILRKGLK 257 (504)
Q Consensus 251 ~~~~~~~ 257 (504)
..+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 8888764
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.86 E-value=3.2 Score=43.41 Aligned_cols=51 Identities=8% Similarity=-0.061 Sum_probs=25.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHh
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQM 71 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 71 (504)
++..+...+.++.|.++..+..+ +...--.+..++...|++++|.+.|++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-------~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-------DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-------CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444455555555554433321 2222233445566666666666666554
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.65 E-value=0.33 Score=43.64 Aligned_cols=70 Identities=6% Similarity=0.136 Sum_probs=59.4
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCccHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLS-----QFNCVNWTQS 117 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 117 (504)
+...++..+...|++.++...++.+.... +.+...+..+|.++.+.|+..+|++.|+... +.|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 45677888889999999999999988777 7788899999999999999999999999765 4588887654
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.61 E-value=1.3 Score=30.01 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=33.5
Q ss_pred ChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 043204 60 RITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
+.-+..+-+..+...++.|++.+..+.+++|.+.+++..|.++|+-++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445666666666666677777777777777777777777777776654
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.34 E-value=0.74 Score=44.94 Aligned_cols=126 Identities=9% Similarity=0.037 Sum_probs=73.6
Q ss_pred HHHHHHHhccCC-hhHHHHHHHHhhcCCCCccHHH-H-HHHHHHHHhcC-ChhHHHHHHHHhhhC------CCC-cc---
Q 043204 49 ASMIGILSESNR-ITEMKEVIDQMKGDSCECKDSV-F-ATAIRTYARAG-QLNEAVSLFKNLSQF------NCV-NW--- 114 (504)
Q Consensus 49 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~-~~--- 114 (504)
..++..+...++ .+.|..+|+++.+.. |...+ + ..++..+...+ +--+|.+++.+..+. ... .+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 477999999988775 33333 2 23333333332 222355555443321 111 11
Q ss_pred -------HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 115 -------TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 115 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
......-.+.+...|+++.|+.+-++...- .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111222234556678888888888887654 23356788888888888888888888887775
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.21 E-value=6.8 Score=35.84 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC---HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED---IVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
...|...+...|++.+|..++..+... ..+.... ...+...++.|...+++.+|..++.++..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~E--t~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVE--TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356778889999999999999998532 2222211 34667778889999999999999888753
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.59 E-value=8.3 Score=40.39 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=79.7
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCC-------------
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF----NCV------------- 112 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~------------- 112 (504)
.++..+...+..+.+.++..-.. .++...-.+.+++...|++++|...|.+.... +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 45555666677776666554432 23333345567778888888888888764210 000
Q ss_pred -----ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCC-cch--HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC
Q 043204 113 -----NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEV-KSR--IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP 184 (504)
Q Consensus 113 -----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 184 (504)
.-..-|..++..+-+.+.++.+.+.-+......+. .++ ...|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 01123556666666666666666555544332111 111 22466666777777777777777766655432
Q ss_pred CHhhHHHHHHHHHhcCCH
Q 043204 185 DRESYHILMKGLCNDRRL 202 (504)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~ 202 (504)
-......|+..++..|..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 234455555555544443
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.14 E-value=2.5 Score=28.70 Aligned_cols=62 Identities=8% Similarity=-0.010 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHH
Q 043204 95 QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLM 158 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 158 (504)
|.-+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.++.+-+.. ..+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHH
Confidence 445677778888888888999999999999999999999999998887654333 23454444
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.60 E-value=2.4 Score=41.50 Aligned_cols=127 Identities=14% Similarity=0.034 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc-hHHHHHHHHHHhhc-------C-CCCcch---
Q 043204 84 ATAIRTYARAGQ-LNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES-KLEAAHILFLRSCY-------G-WEVKSR--- 150 (504)
Q Consensus 84 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~-------~-~~~~~~--- 150 (504)
..++..+...++ .+.|..+|+.+.+.+..........++..+...+ +--+|.+++.+..+ . .....+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444555555566 5889999999988764443333334444433333 22334444443321 1 000000
Q ss_pred -----HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 151 -----IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPD-RESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 151 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
......=...+...|+++.|+++-++.... .|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 011122234566789999999999998876 454 678999999999999999999998876
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.42 E-value=3.5 Score=29.82 Aligned_cols=43 Identities=14% Similarity=0.038 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 043204 314 EGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (504)
.++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444444444433111222233333444455555555554444
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.27 E-value=2.1 Score=39.03 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=56.2
Q ss_pred hcHHHHHHHHhccCChhHHHHHHHHhhcC--CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh---CCCCccHHH--H
Q 043204 46 PVYASMIGILSESNRITEMKEVIDQMKGD--SCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ---FNCVNWTQS--F 118 (504)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~ 118 (504)
.++..+...+.+.|+++.|.++|.++... +...-...+...++.+...+++..+...++.... .+..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35666777777777777777777776643 2233445567777777777777777777776542 222222111 0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 119 NTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11111223456777776666665433
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.50 E-value=15 Score=35.15 Aligned_cols=331 Identities=9% Similarity=-0.006 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 043204 82 VFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVL 161 (504)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (504)
.|.....+ .+.|++..+..+...+....+.|. ..|..+.... .....++....+.+.. +.+.....-+..+..+
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~---~~p~~~~Lr~~~l~~l 82 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDL-MNQPAVTVTNFVRANP---TLPPARTLQSRFVNEL 82 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTG-GGCCHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCC---CChhHHHHHHHHHHHH
Confidence 34444444 345778777777666654433332 2333333222 1123445555544432 2333333445556667
Q ss_pred hhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch
Q 043204 162 CQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
.+.+++...+.++.. .+.+...-.....+....|+..+|......+. ..... ....+..++..+.+.|.+
T Consensus 83 ~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW---~~~~~--~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 83 ARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW---LTGKS--QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH---SCSSC--CCTHHHHHHHHHHHTTCS
T ss_pred HhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH---hCCCC--CcHHHHHHHHHHHHCCCC
Confidence 777777776664443 12344444455666677787777777666653 22222 334566777777766654
Q ss_pred hH--HHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChhHHHHH
Q 043204 242 QD--AMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE-GRIVEGDKV 318 (504)
Q Consensus 242 ~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~ 318 (504)
.. ...=++.+... |+...|..+...+ .++.. .+...+... .+...+...
T Consensus 153 t~~~~~~R~~~al~~--------------------~~~~~a~~l~~~l-----~~~~~---~~a~~~~al~~~p~~~~~~ 204 (618)
T 1qsa_A 153 DPLAYLERIRLAMKA--------------------GNTGLVTVLAGQM-----PADYQ---TIASAIISLANNPNTVLTF 204 (618)
T ss_dssp CHHHHHHHHHHHHHT--------------------TCHHHHHHHHHTC-----CGGGH---HHHHHHHHHHHCGGGHHHH
T ss_pred CHHHHHHHHHHHHHC--------------------CCHHHHHHHHHhC-----CHHHH---HHHHHHHHHHhChHhHHHH
Confidence 33 22222222222 3344444433222 12221 122222111 222222222
Q ss_pred HHHHHHCCCCcchh---hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHH
Q 043204 319 LDEMRTKGFWPSLV---MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVR--VYNILLKGLCDAGNSAVAVMYLKKM 393 (504)
Q Consensus 319 ~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (504)
... . .++.. .+...+.-+.+ .+.+.|...+...-......+... ....+.......+...++...+...
T Consensus 205 ~~~---~--~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 205 ART---T--GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHH---S--CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred Hhc---c--CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 211 1 12222 11122222333 377888888887333333322222 1222222333344355666666665
Q ss_pred HHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 394 SKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 394 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
... .++.....-.+....+.|+++.|...|+.|..... ......--+.+++...|+.++|..+|+++.+
T Consensus 279 ~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 279 IMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 433 23333344455555677999999999988866321 1122223345577788999999999999873
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.19 E-value=3.2 Score=31.42 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcch-------hhHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 043204 297 ASYSAMAIDLYNEGRIVEGDKVLDEMRTKG-FWPSL-------VMYEAKLAALFKDGMVDEALEVIEEEMVKG 361 (504)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (504)
..+-.-+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++++...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 344455667777788888887777654421 11221 245667788888899999988888755443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.88 E-value=6.9 Score=32.45 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=27.9
Q ss_pred HhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 043204 55 LSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
+.+.|+++++++....-++.. |-|...-..++..++-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555555555555555444 44555555555555555555555555554444
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.14 E-value=4.4 Score=30.65 Aligned_cols=64 Identities=3% Similarity=-0.198 Sum_probs=43.5
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcch-------hcHHHHHHHHhccCChhHHHHHHHHhh
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNG-------PVYASMIGILSESNRITEMKEVIDQMK 72 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (504)
...+-.-++.+...|.++.|+-+.+.+.... +..|+. .++..+.+++...+++..|...|++..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455778888888998888887765542 112221 245667788888899999998888854
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.10 E-value=5.9 Score=28.66 Aligned_cols=45 Identities=9% Similarity=-0.039 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
.++.+++++.+.+.......+-.|.-++.+.|+++.|.+..+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444433321122222333334444444444444444443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.00 E-value=6 Score=28.59 Aligned_cols=49 Identities=10% Similarity=0.010 Sum_probs=34.7
Q ss_pred hhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 96 LNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.-+..+-++.+...++.|++.+..+.+++|-+.+++..|.++|+.++.+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3345566666667777777777777777777777777777777776654
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.32 E-value=6.6 Score=28.37 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHH
Q 043204 382 NSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLI 445 (504)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (504)
|.-+..+-++.+... .+.|++.+..+.+++|.+.+++..|.++|+-.+.+- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 334455555555544 667777777777777777777777777777776652 23344565555
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.27 E-value=13 Score=33.79 Aligned_cols=61 Identities=8% Similarity=-0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCC--CCccHHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 82 VFATAIRTYARAGQLNEAVSLFKNLSQFN--CVNWTQSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
+...+...|.+.|+++.|.+.|.++.... ...-...+-.+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34556666666666666666666665421 12223455555666666666666666555543
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.89 E-value=3.3 Score=34.31 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=52.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
+..+.+.|++++|++....-.+..|. |...-..++..++-.|++++|.+-++...+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34567899999999999999999888 99999999999999999999999999888764
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.63 E-value=11 Score=27.66 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 043204 294 PSLASYSAMAIDLYNE---GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 294 ~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (504)
|+..+--....++.++ .+..+++.+++.+...+..-.....-.|.-++.+.|++++|.+..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3443333333444444 23334555555555433221222233344455555555555555555
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.36 E-value=22 Score=30.79 Aligned_cols=142 Identities=10% Similarity=-0.004 Sum_probs=67.8
Q ss_pred HHhccCChhHHHHHH----HHhhcCCCCccHHHHHHHHHHHHhcCChhHH-HHHHHHh----hhCC--CCccHHHHHHHH
Q 043204 54 ILSESNRITEMKEVI----DQMKGDSCECKDSVFATAIRTYARAGQLNEA-VSLFKNL----SQFN--CVNWTQSFNTLL 122 (504)
Q Consensus 54 ~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~----~~~~--~~~~~~~~~~ll 122 (504)
.+.+.|+...|.++- +...+.++++|......++..+.....-+-. .++.+.+ .+.| ..-++.....+.
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 344555555444443 4444556666666666666666554432111 1222222 2212 223445556666
Q ss_pred HHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043204 123 KEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRL 202 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 202 (504)
..|.+.+++.+|...|- . +..++...+..++.-+...+... .+|...-..++. |.-.++.
T Consensus 144 ~~~~~e~~~~~Ae~H~i--l---g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~ 203 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHLV--L---GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANV 203 (336)
T ss_dssp HHHHHTTCHHHHHHHHT--T---SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCH
T ss_pred HHHHccCCHHHHHHHHH--h---cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCH
Confidence 66777777777766662 1 12223344444443333332211 112222222333 5566788
Q ss_pred HHHHHHHHHHHHH
Q 043204 203 NEATHLLYSMFWR 215 (504)
Q Consensus 203 ~~a~~~~~~~~~~ 215 (504)
..|..+++.....
T Consensus 204 ~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 204 RAANTAYRIFTSA 216 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766543
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.05 E-value=21 Score=30.52 Aligned_cols=175 Identities=7% Similarity=0.033 Sum_probs=86.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFA 234 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (504)
.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++-..+.+...+.+.+++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444456666777777766543321 2344466555555544444444666677776666666655
Q ss_pred HHhcCchh-HHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCC
Q 043204 235 LCDQGKIQ-DAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRG--GIPSLASYSAMAIDLYNEGR 311 (504)
Q Consensus 235 ~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~ 311 (504)
+.....-+ .-.++++.+++- ..+.+ ..-++.....+...|.+.++
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~W--------------------------------S~~~g~~~~Gdp~LH~~~a~~~~~e~~ 149 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNW--------------------------------SIKFSEYKFGDPYLHNTIGSKLLEGDF 149 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHH--------------------------------HHHTSSCTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHH--------------------------------HhhcCCCCCCCHHHHHHHHHHHhhcCC
Confidence 54432211 112222322221 01111 11255666667777788888
Q ss_pred hhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcC---CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 043204 312 IVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKD---GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVM 388 (504)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 388 (504)
+.+|...|- .|-.-+...+..++.-+... |...+ ++...-..+ --|...|+...|..
T Consensus 150 ~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~RaV-L~yL~l~n~~~A~~ 209 (312)
T 2wpv_A 150 VYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSRLV-FNYLFISNISFAHE 209 (312)
T ss_dssp HHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHHHH-HHHHHTTBHHHHHH
T ss_pred HHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHHHH-HHHHHhcCHHHHHH
Confidence 888777663 11111234444443332222 22222 122222222 23556788888888
Q ss_pred HHHHHHHh
Q 043204 389 YLKKMSKQ 396 (504)
Q Consensus 389 ~~~~~~~~ 396 (504)
+++...+.
T Consensus 210 ~~~~f~~~ 217 (312)
T 2wpv_A 210 SKDIFLER 217 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.50 E-value=8.8 Score=30.18 Aligned_cols=55 Identities=24% Similarity=0.117 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCC
Q 043204 381 GNSAVAVMYLKKMSKQVGCVAN-GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWP 436 (504)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 436 (504)
++...+.++|..|..+ ++--. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3355666667766666 54332 3455666666666677777777777666655444
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.34 E-value=15 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=11.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 043204 444 LIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
+.-++.+.|++++|.++.+.++
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3334555555555555555555
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.16 E-value=35 Score=30.45 Aligned_cols=57 Identities=12% Similarity=-0.055 Sum_probs=28.0
Q ss_pred ccccCCCCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043204 268 LCPCNDGEDIEGAKSLINEALIRGGIPS-----LASYSAMAIDLYNEGRIVEGDKVLDEMRT 324 (504)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (504)
+..+...|++.+|.+++..+.+.-...| ...+..-+..|...+++.++...+.....
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 4455556666666666655554311111 12233334444555666666666655543
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.88 E-value=39 Score=28.90 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHH----HHHhhhCCCCCCHhhHHHH
Q 043204 117 SFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHV----FQEMDFQGCYPDRESYHIL 192 (504)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l 192 (504)
+|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ .+-..+.+++++..+...+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566777788888888888887443 2234455666655554 5555667788888888888
Q ss_pred HHHHHhcCCHH-HHHHHHHHHHHHHhhCC--CCcCHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 193 MKGLCNDRRLN-EATHLLYSMFWRISQKG--SGEDIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 193 ~~~~~~~~~~~-~a~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
+..+.....-+ .-.++++.+...-.+.| ..-+......+...|.+.|++.+|...|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 87765532111 22344444433323332 22366778888888888888888777664
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.55 E-value=18 Score=24.51 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=57.2
Q ss_pred cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHH
Q 043204 380 AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVM 459 (504)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 459 (504)
....++|..+-+-+... +. ...+--+-+..+...|++++|..+.+... .||...|..|- -.+.|-.+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHH
Confidence 44678888888887765 32 22222223355778899999988876554 58888876663 457788888888
Q ss_pred HHHHHHHcCCCCCHHHH
Q 043204 460 WLEEMISQAKLPDISVW 476 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~ 476 (504)
.+.++..+| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 887776654 3444443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.82 E-value=49 Score=28.62 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcchHHHHHHHH
Q 043204 117 SFNTLLKEMVKESKLEAAHILF 138 (504)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~ 138 (504)
+|.++..-|.+.+++++|++++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL 58 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDIL 58 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHH
Confidence 4445555555555555555444
No 269
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.15 E-value=69 Score=29.69 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CccH--HHH-HHHHHHHHhcchHHHHHHHHHHhh
Q 043204 82 VFATAIRTYARAGQLNEAVSLFKNLSQFNC-VNWT--QSF-NTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
.+|.+++.|...+.++.|..+.....-... .++. ..| -.+.+.+.-.+++.+|.+.+....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355555555555555555555554431110 1111 111 123444445555555555555443
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.79 E-value=34 Score=25.52 Aligned_cols=53 Identities=15% Similarity=0.064 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 043204 421 EASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI 473 (504)
Q Consensus 421 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 473 (504)
++.++|..|..+|+--. +..|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36667777776655332 344555666666677777777777777666655543
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.45 E-value=29 Score=27.83 Aligned_cols=54 Identities=11% Similarity=-0.109 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 043204 420 LEASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI 473 (504)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 473 (504)
+.+..+|..|..+|+.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466777888877766433 444666666777778888888888887777666644
No 272
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.43 E-value=20 Score=29.17 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 116 QSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
......+..+.+.|+.++|..+|-+..
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 334445555556666666666555443
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.70 E-value=26 Score=23.77 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 043204 412 GLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQA 468 (504)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (504)
.+...|++++|..+.+... .||...|..| +-.+.|-.+++...+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 3455666666665554332 3555555444 2345566666666555555443
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.12 E-value=35 Score=28.28 Aligned_cols=48 Identities=8% Similarity=-0.082 Sum_probs=22.1
Q ss_pred HhcCChHHHHHHHHHHHHhcCCCCchhh--HHHHHHHHhhcCcHHHHHHHH
Q 043204 378 CDAGNSAVAVMYLKKMSKQVGCVANGET--YGILVDGLCRDGRFLEASRVL 426 (504)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~ 426 (504)
+..++.....++++.+.+. |..++... -.+.+...++.|+.+-+..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 3455554455556666555 55544321 112233344456655443333
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.53 E-value=74 Score=27.89 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCCCcc
Q 043204 299 YSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGM--VDEALEVIEEEMVKGTFVPT 366 (504)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 366 (504)
...++.-|...++.++|.+.++++...... ...+..++..++-+.++ .+....++.. +...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~-L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKS-LWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHH-HHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHH-HHHCCCCCH
Confidence 456677777788888888888877542221 23334455555554432 3456666665 444444333
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.29 E-value=49 Score=25.06 Aligned_cols=52 Identities=12% Similarity=-0.063 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 043204 422 ASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI 473 (504)
Q Consensus 422 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 473 (504)
+..+|..|..+|+--. +..|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4455555555554322 333444445555556666666666665555555543
No 277
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.68 E-value=49 Score=24.88 Aligned_cols=109 Identities=8% Similarity=-0.044 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 043204 384 AVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEE 463 (504)
Q Consensus 384 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (504)
+.+..+++.+.+. |+-.|...-..++....+.| .....+-.++..+|+.++ +....+..+- ....+.|.+++++
T Consensus 47 ~~i~~vl~~l~~~-g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~-~d~~~~a~~l~~k 120 (159)
T 3c1d_A 47 EDYERVIAWCHEH-GYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREAD-IDWAALARDQATR 120 (159)
T ss_dssp HHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcC-HhHHHHHHHHHHH
Confidence 3444555555554 55544444444454444433 223455556666664332 2222222221 1223344444443
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHH
Q 043204 464 MISQAKLPDISVWSSLVASVCCNTADLNVCRKTLE 498 (504)
Q Consensus 464 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 498 (504)
-......++.....-++..+.+.|-..+.+..+++
T Consensus 121 k~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~~l~ 155 (159)
T 3c1d_A 121 KYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDIWR 155 (159)
T ss_dssp HHCSSCCCSHHHHHHHHHHHHHTTCCHHHHTTCC-
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 32111123334455556655666655555544443
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.60 E-value=36 Score=27.70 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
.....+..+.+.|+.++|.++|-+..
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34556677778888888888875543
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.92 E-value=63 Score=25.91 Aligned_cols=140 Identities=9% Similarity=0.063 Sum_probs=75.0
Q ss_pred CCCCCchHHHHHHHhcCC------hhHHHHHHHHHHhcC-CCCCcchhcHHHHHHHH----hccCC-hhHHHHHHHHhhc
Q 043204 6 PRLLTPTYLSQIIKKQKS------PLTALKIFKEAKEKY-PNYRHNGPVYASMIGIL----SESNR-ITEMKEVIDQMKG 73 (504)
Q Consensus 6 p~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~~~----~~~~~-~~~a~~~~~~~~~ 73 (504)
+.--+-..|..++..... .++...-|+.-+... .+ .-....|...|.-. -..+. -..-..++++..+
T Consensus 27 r~GRs~~~L~~~l~~~~~~~~~~~l~~~r~~fE~~i~~~~~~-dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~ 105 (223)
T 4aez_C 27 KAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESL-DDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTR 105 (223)
T ss_dssp TTCCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHGGGS-SCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHH
Confidence 344445566666655332 344555565554431 11 11244555555432 22222 1234455555553
Q ss_pred CC-----CCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCcc-HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCC
Q 043204 74 DS-----CECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNW-TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEV 147 (504)
Q Consensus 74 ~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.- ...|+. |..+=-.|+. ..+.+..+|..|...++-.. +..|......+-..|++.+|..+|+.-... ..
T Consensus 106 ~F~~~~rYknD~R-yLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A 181 (223)
T 4aez_C 106 EFVRNPLYKDDVR-YLRIWMQYVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KA 181 (223)
T ss_dssp HTTTCGGGTTCHH-HHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TC
T ss_pred HhcccccccCCHH-HHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC
Confidence 21 122332 2222222233 23678889999988776543 456777788888899999999999887765 33
Q ss_pred cch
Q 043204 148 KSR 150 (504)
Q Consensus 148 ~~~ 150 (504)
.|-
T Consensus 182 ~P~ 184 (223)
T 4aez_C 182 KPF 184 (223)
T ss_dssp BSH
T ss_pred ccH
Confidence 443
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.53 E-value=63 Score=25.43 Aligned_cols=56 Identities=20% Similarity=0.052 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc
Q 043204 164 CRRSDLALHVFQEMDFQGCYPD-RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE 223 (504)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (504)
.+....+.++|..|..+|+-.. ..-|......+...|++.+|.++|+.- .+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G----I~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG----AENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCcc
Confidence 3446688888888887765433 345666777777888888888888877 5665555
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.29 E-value=1.1e+02 Score=28.32 Aligned_cols=125 Identities=7% Similarity=0.012 Sum_probs=61.9
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCC-CccHH--H-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCcc------
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSC-ECKDS--V-FATAIRTYARAGQLNEAVSLFKNLSQFNCVNW------ 114 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 114 (504)
...+|.+++.|...+.++.|..+..+..--.. .++.. . +..+.+.+.-.+++.+|.+.|......-+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 44567777777777777777777776642110 12221 1 23345666667777777777766554322111
Q ss_pred HHH--HHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 043204 115 TQS--FNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEM 177 (504)
Q Consensus 115 ~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (504)
..+ |..++..+ .|+... ..+|. ..........|..|..++ +.|+.+.-...++.-
T Consensus 311 ~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 311 QQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp HHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 011 12222222 344332 12222 122222344566666665 667777666655443
No 282
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=57.96 E-value=56 Score=26.27 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcC
Q 043204 385 VAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYW 435 (504)
Q Consensus 385 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (504)
.+..+++.+.+. |+-.|...-..++....+.+.+ ....+-.++..+|+.
T Consensus 94 ~i~~vl~~L~~~-g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 94 FVEPILKKLRGQ-QLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 344555555554 5554544444444444331111 234455555666643
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=56.47 E-value=47 Score=24.77 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCcc
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ--LNEAVSLFKNLSQFNCVNW 114 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 114 (504)
...++.=|...|+.++|...++++.... -....+...+..++-+.++ .+.+..++..+.+.++.+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4556667777778888877777775211 1122233444444444322 3456666766666665554
No 284
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=54.80 E-value=1.1e+02 Score=26.94 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=39.2
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccC-ChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESN-RITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
..++.-|...|+.++|.+.++.+.. |..-.....+..+..++-+.. ..+.+..++..+...++-+.......+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~--p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRA--PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC--CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC--chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 4567888888999999999888743 210011223333333333321 124555666666665544444443333
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.94 E-value=68 Score=24.15 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=32.6
Q ss_pred ccCChhHHHHHHHHhhcCCCCc--cHHHHHHHHH-H-----HHhcCChhHHHHHHHHhh
Q 043204 57 ESNRITEMKEVIDQMKGDSCEC--KDSVFATAIR-T-----YARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 107 (504)
..|++-+|.++|+..-.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3378888888888877665344 4445666665 2 235677777777777654
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.76 E-value=59 Score=23.37 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=36.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCcc
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ--LNEAVSLFKNLSQFNCVNW 114 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 114 (504)
...++.=|...|+.++|.+.++++.... -....+...+..++-+.++ .+.+..++..+.+.++.+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3556667777778888887777775211 1122233444444444332 3456677777766665554
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.71 E-value=72 Score=23.76 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhCCCCcc-HHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 98 EAVSLFKNLSQFNCVNW-TQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.+..+|..|...++-.. +..|......+-..|++.+|..+|+.-...
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 35666666665554322 334555555566666666666666665544
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.25 E-value=1.4e+02 Score=26.84 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=22.5
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCccHHH--HHHHHHHHHhcCChhHHHHHHH
Q 043204 52 IGILSESNRITEMKEVIDQMKGDSCECKDSV--FATAIRTYARAGQLNEAVSLFK 104 (504)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 104 (504)
+...+..|+.+-+..+++. |..++... ..+.+...+..|+.+-+..+++
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 3444556666555544443 33333211 1233444455566655555444
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.59 E-value=54 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=12.3
Q ss_pred HhcCchhHHHHHHHHHHHcCCC
Q 043204 236 CDQGKIQDAMQILEKILRKGLK 257 (504)
Q Consensus 236 ~~~g~~~~a~~~~~~~~~~~~~ 257 (504)
+..++.....++++.+.+.|..
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGAD 211 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCC
T ss_pred HHccccchHHHHHHHHHHcCCC
Confidence 3445555555666666666544
No 290
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.00 E-value=60 Score=22.06 Aligned_cols=49 Identities=4% Similarity=-0.081 Sum_probs=20.4
Q ss_pred HHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 125 MVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
+...|++.+|..+.+... -||...|.+|. -.+.|-.+++..-+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 334444444444433222 34444443332 23344444444444444443
No 291
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=48.02 E-value=63 Score=22.00 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=5.7
Q ss_pred HhcchHHHHHHHH
Q 043204 126 VKESKLEAAHILF 138 (504)
Q Consensus 126 ~~~~~~~~a~~~~ 138 (504)
...|++.+|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3444444444444
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.96 E-value=95 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhh
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (504)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3455666666666666666666664
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.71 E-value=84 Score=23.39 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC--HHHHHHHHHHhhhCCC
Q 043204 119 NTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR--SDLALHVFQEMDFQGC 182 (504)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 182 (504)
..++.-|...|+.++|.+.++++... ... ...+...+..++-+.++ .+.+.+++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG-GGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC-cch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45566666666666666666665321 111 12223333333333222 3445556666655443
No 294
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.45 E-value=78 Score=25.11 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhh
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
+..|.+.|.+++|.++|++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3445555555555555555443
No 295
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.95 E-value=98 Score=23.63 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=26.5
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 043204 341 LFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQ 396 (504)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (504)
+.-.|.+..++-++.. .. ..+..-|..+ +|-+..++..|...++.+...
T Consensus 43 LyyngEY~R~Lf~L~~-lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~ 91 (242)
T 3kae_A 43 LYLNGEYTRALFHLHK-LN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEG 91 (242)
T ss_dssp HHHTTCHHHHHHHHHT-CC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhcchHhHHHHHHHh-cc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 3446667666655442 11 2233333333 455667777777777777654
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.90 E-value=91 Score=23.49 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=36.0
Q ss_pred hcCcHHHHHHHHHHHHhcCcCC--CcchHHHHHH-H-----HHccCCHHHHHHHHHHHHH
Q 043204 415 RDGRFLEASRVLEEMLIRSYWP--CVETYNVLIR-G-----LCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 466 (504)
..|++-+|.++|+..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3488888888888877654334 4556666666 2 2357888888888888764
No 297
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=45.18 E-value=40 Score=18.91 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
-++++.+.|+...... +.++...++|++.|.+++
T Consensus 10 ~i~~L~~MGF~d~~~~----~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDRN----VAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHTTCCCHHHH----HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHH----HHHHHHhCCCHHHHHHHH
Confidence 3456666687433322 344445577788887765
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.41 E-value=1e+02 Score=23.25 Aligned_cols=50 Identities=8% Similarity=0.098 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCCCCccH-HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCc
Q 043204 64 MKEVIDQMKGDSCECKD-SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVN 113 (504)
Q Consensus 64 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (504)
+.++|..|..+|+-... ..|......+-..|++..|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44445444444432222 224444444444555555555555544444444
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.40 E-value=1.7e+02 Score=30.01 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhcCCCC-cc--hHHHHHHHHHHHhhcC
Q 043204 116 QSFNTLLKEMVKESKLEAAHILFLRSCYGWEV-KS--RIQSLNLLMDVLCQCR 165 (504)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~ 165 (504)
.-|..++..+-+.+-++.+.++-+........ .+ ....|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788888898999888888777766543211 11 2345677777666544
No 300
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=42.22 E-value=1.1e+02 Score=23.29 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=42.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHH-HHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhH
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIG-ILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNE 98 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (504)
+-.+++.+.-+-.-... +..-|..|+. .+--.|.+..++-++...- .....-|.. -+|-+..++..
T Consensus 14 kY~dYdt~~fLsa~L~~-------~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~--LCy~klKdYkk 80 (242)
T 3kae_A 14 RYRDYETAIFLAACLLP-------CKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYES--LCYKKKKDYKK 80 (242)
T ss_dssp HTTCHHHHHHHHHHHC-----------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHH--HHHHHTTCHHH
T ss_pred hcccccHHHHHHHHHcc-------CChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHH--HHHHHHHHHHH
Confidence 44566666544444332 2224555543 2345677777776654331 111222332 24567789999
Q ss_pred HHHHHHHhhhCCCC
Q 043204 99 AVSLFKNLSQFNCV 112 (504)
Q Consensus 99 a~~~~~~~~~~~~~ 112 (504)
|...++.+.+..+.
T Consensus 81 A~~~le~il~~kvd 94 (242)
T 3kae_A 81 AIKSLESILEGKVE 94 (242)
T ss_dssp HHHHHHHHHTTCSB
T ss_pred HHHHHHHHHhcccc
Confidence 99999988855444
No 301
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.07 E-value=51 Score=19.28 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=21.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 462 EEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 462 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
+++.+.|+........ ++...++|++.|.+++-...+
T Consensus 14 ~~L~~MGF~d~~~n~~----AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 14 EQLRSMGFLNREANLQ----ALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHTCCCHHHHHH----HHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHcCCCcHHHHHH----HHHHcCCCHHHHHHHHHhCCC
Confidence 4444448754443333 334447778888887765443
No 302
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=41.86 E-value=50 Score=19.09 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=18.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 461 LEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
++++.+.|+.+...... ++...++|++.|.+++
T Consensus 16 l~~L~~MGF~~~~~~~~----AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 16 LEQLSAMGFLNREANLQ----ALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHTTCCCHHHHHH----HHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHH----HHHHhCCCHHHHHHHH
Confidence 34555558755443333 3344466788887765
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=41.49 E-value=1.7e+02 Score=25.03 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRE----SYHILMKGLCNDRRLNEATHL 208 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~ 208 (504)
++.+...++.|+.+-+..+++ .|..+|.. -++.| ...+..|+.+-+.-+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpL-h~A~~~g~~~iv~~L 78 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPL-HNAVQMSREDIVELL 78 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHH-HHHHHcCCHHHHHHH
Confidence 334445567788766655554 45555432 23334 334566666544333
No 304
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=40.32 E-value=1.2e+02 Score=23.19 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC
Q 043204 348 DEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCV 400 (504)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (504)
+.+..++.. +...|.-.|...-..++....+.|.+. ...+-.++... |+.
T Consensus 50 ~~ie~vl~~-L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~K-GI~ 99 (177)
T 3e3v_A 50 DYISEIINK-LIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKK-GID 99 (177)
T ss_dssp HHHHHHHHH-HHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTT-TCC
T ss_pred HHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHc-CCC
Confidence 344445554 555555555544444454444333221 23344444444 554
No 305
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=40.25 E-value=83 Score=21.18 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCcCCCcchHHHHHHHHHccC
Q 043204 422 ASRVLEEMLIRSYWPCVETYNVLIRGLCSIG 452 (504)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 452 (504)
|.++.++....|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4444444455555555555555555544444
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.22 E-value=1e+02 Score=22.13 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC--HHHHHHHHHHhhhCCC
Q 043204 119 NTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR--SDLALHVFQEMDFQGC 182 (504)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 182 (504)
..++.-|...|+.++|.+.++++... ... ...+...+..++-+.++ .+.+.+++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG-GGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC-ccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45566666666666666666665311 111 12223333333433321 3455566666655543
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.04 E-value=73 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=31.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcchh-------hHHHHHHHHh--cCCCHHHHHHHHHH
Q 043204 304 IDLYNEGRIVEGDKVLDEMRTKGFWPSLV-------MYEAKLAALF--KDGMVDEALEVIEE 356 (504)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~ 356 (504)
...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 34455678887777777777766554422 2344444432 56777766666664
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.91 E-value=36 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=11.9
Q ss_pred HHHHHhcCchhHHHHHHHHHHH
Q 043204 232 LFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
+...++.|+.+-+..+++.-..
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCC
Confidence 3344556676666655555433
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.53 E-value=57 Score=24.63 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=30.6
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCch
Q 043204 178 DFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQK--GSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 178 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
.+.|++++. .-..++..+...+..-.|.++++.+ .+. +...+..|...-+..+.+.|-+
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l----~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEI----KQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHH----HHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHH----HhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555443 2334445555555555666666665 444 4444555555555566665543
No 310
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=38.47 E-value=58 Score=18.89 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHH
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLE 498 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 498 (504)
-++++.+.|+.+...... ++...++|++.|.+++-
T Consensus 14 ~l~~L~~MGF~~~~~~~~----AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQ----ALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHHHHTTTCCCHHHHHH----HHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHH----HHHHhCCCHHHHHHHHH
Confidence 345666667644443333 33344667888887764
No 311
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.46 E-value=1e+02 Score=21.73 Aligned_cols=53 Identities=9% Similarity=-0.041 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 202 LNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.+++.+-++.++..+....+.|+...--.-+..+...++++.|..+...+...
T Consensus 38 ~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 38 CDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 35555555555555566666555444333444556667777777777777653
No 312
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.18 E-value=1.5e+02 Score=23.51 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=8.7
Q ss_pred cCCCCChHHHHHHHHHHH
Q 043204 271 CNDGEDIEGAKSLINEAL 288 (504)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~ 288 (504)
....++...+.++.+.+.
T Consensus 217 A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344445555555555444
No 313
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=38.09 E-value=64 Score=19.25 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=19.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHH
Q 043204 461 LEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLE 498 (504)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 498 (504)
++++.+.|+...... +.++...++|++.|.+++-
T Consensus 21 i~~L~~MGF~d~~~~----~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 21 LRQLNDMGFFDFDRN----VAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HHHHHHHTCCCHHHH----HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHH----HHHHHHhCCCHHHHHHHHH
Confidence 455555587433332 3444455777888877653
No 314
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.51 E-value=28 Score=20.90 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043204 168 DLALHVFQEMDFQGCYPDRESYHILMKGL 196 (504)
Q Consensus 168 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 196 (504)
++|.+.|.+|++..-.++..||...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665543233456677776666
No 315
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.51 E-value=63 Score=19.99 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=20.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 043204 461 LEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQ 499 (504)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 499 (504)
++++.+.|+...... +.++...++|++.|.+++-.
T Consensus 23 l~qL~~MGF~d~~an----~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 23 MECLQAMGFVNYNAN----LQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHTCCCHHHH----HHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHH----HHHHHHcCCCHHHHHHHHHh
Confidence 444445577444333 34444557778888877654
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.04 E-value=68 Score=25.54 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=23.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHH
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQ 70 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 70 (504)
...++.|+.+....+++.-... . .++..- .+.+...+..|+.+-+..+++.
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~--~-~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDV--R-QPDKEN-VTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT--T-CCCTTS-CCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHcCCCc--C-CCCCCC-CCHHHHHHHhCCHHHHHHHHHc
Confidence 3455667766655555432111 0 111111 2234445566666655555443
No 317
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.02 E-value=61 Score=20.56 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=19.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 043204 462 EEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQ 499 (504)
Q Consensus 462 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 499 (504)
+++.+.|+.... ..+.+|...++|++.|.+++-.
T Consensus 34 ~qL~eMGF~dr~----~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 34 EELKALGFANRD----ANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHTCCCHH----HHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHcCCCcHH----HHHHHHHHhCCCHHHHHHHHHh
Confidence 444444764333 3344555567778888777643
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.59 E-value=1.5e+02 Score=23.58 Aligned_cols=186 Identities=9% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHH--HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSV--FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE 128 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (504)
.+...++.|+.+.+..+++.+.+.+..++... -.+.+...+..|+.+-+..+++.-...+...... .+.+...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~l~~A~~~ 89 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG--QTAAHLACEH 89 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CCHHHHHHHc
Q ss_pred chHHHHHHHHHHhhcC--CCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhh---HHHHHHHHHhcCCHH
Q 043204 129 SKLEAAHILFLRSCYG--WEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRES---YHILMKGLCNDRRLN 203 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~ 203 (504)
|+.+-+..+++..... .....+....+.+..+..... .++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
-+..+++ ....+......-.+.+...+..|+.+-+..+++
T Consensus 165 ~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 165 MVQLLLQ------HGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHH------TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHH------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.98 E-value=58 Score=25.89 Aligned_cols=19 Identities=0% Similarity=-0.338 Sum_probs=8.6
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 043204 15 SQIIKKQKSPLTALKIFKE 33 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~ 33 (504)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344444555444444443
No 320
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.69 E-value=55 Score=19.05 Aligned_cols=11 Identities=0% Similarity=0.265 Sum_probs=6.7
Q ss_pred hhHHHHHHHHh
Q 043204 490 LNVCRKTLEQL 500 (504)
Q Consensus 490 ~~~a~~~~~~~ 500 (504)
++.|.+++++|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666655
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.65 E-value=2.1e+02 Score=26.53 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 23 SPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 23 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
.++.|...|..+....|+ +...||.|.-.....|+.-+|.-.|-+..... .|-+.+...+...+
T Consensus 167 ~~~~A~~~Y~~A~~~~P~---~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPS---NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp CHHHHHHHHHHHHHHCTT---BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHH
Confidence 344555555555555554 44455555544444444444444443333322 34444444444443
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.15 E-value=1.2e+02 Score=22.88 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=19.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CCCcchhhHHHHHHHHhcCC
Q 043204 302 MAIDLYNEGRIVEGDKVLDEMRTK--GFWPSLVMYEAKLAALFKDG 345 (504)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 345 (504)
++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444555555555555554 43334333333333333333
No 323
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.89 E-value=88 Score=20.93 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHHHhc
Q 043204 22 KSPLTALKIFKEAKEK 37 (504)
Q Consensus 22 ~~~~~A~~~~~~~~~~ 37 (504)
|++-+|-++++..-..
T Consensus 15 g~~~eaHEvlE~~W~~ 30 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLK 30 (94)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 4555555555444444
No 324
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=34.70 E-value=1.5e+02 Score=22.65 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCc
Q 043204 62 TEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVN 113 (504)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (504)
+....+++.+.+.|.-.|...-...++...+.|.+ ....+-.++.+.|+..
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH
Confidence 45566677777777555555555556655554432 3345566677777654
No 325
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.92 E-value=2.2e+02 Score=24.25 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhhCCCCcC
Q 043204 154 LNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR--LNEATHLLYSMFWRISQKGSGED 224 (504)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 224 (504)
.+.++.-|...|+.++|.+.++++..-... ...+...+..+.-+.++ .+.+..++..+ .+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L----~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSL----WKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHH----HHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHH----HHCCCCCH
Confidence 466778888889999999988888631111 12233333344444322 34455666555 45554433
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.99 E-value=2.5e+02 Score=24.29 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=17.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhh
Q 043204 48 YASMIGILSESNRITEMKEVIDQMK 72 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (504)
...++.=|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566666777777777777777765
No 327
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.16 E-value=1.3e+02 Score=23.04 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=6.2
Q ss_pred HhcCchhHHHHHH
Q 043204 236 CDQGKIQDAMQIL 248 (504)
Q Consensus 236 ~~~g~~~~a~~~~ 248 (504)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3455555444444
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.09 E-value=1.6e+02 Score=21.72 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=38.7
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch
Q 043204 175 QEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 175 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
+.+.+.|++++. .-..++..+...+..-.|.++++.+ .+.+...+..|....+..+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l----~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSI----RQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHH----HHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHH----HHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345667776544 3445556666666677888888888 6666666666666666667666643
No 329
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.82 E-value=2.9e+02 Score=24.61 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 191 ILMKGLCNDRRLNEATHLLYSMFWRISQKGSG-EDIVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
.++..|...|++.+|.+++..+.......... .-..+|..-+..|...+++.++...+.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 46677778888888888877775443332111 1133455556677777888888777776654
No 330
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.36 E-value=1.8e+02 Score=24.20 Aligned_cols=184 Identities=10% Similarity=0.009 Sum_probs=81.9
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHh
Q 043204 232 LFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSL---ASYSAMAIDLYN 308 (504)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~ 308 (504)
+...+..|+.+-+..++ +.|..+....-.+. +......|+.+.+.. +++.|..++. .-.+. +...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFP-LHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCH-HHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCH-HHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcH-HHHHHH
Confidence 44455677776554444 44544332221222 333344566554443 3444544432 22222 334445
Q ss_pred cCChhHHHHHHHHHHHCCCCcchh---hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCChH
Q 043204 309 EGRIVEGDKVLDEMRTKGFWPSLV---MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVP-TVRVYNILLKGLCDAGNSA 384 (504)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 384 (504)
.|+.+-+..+ .+.|..++.. .+.+.+...+..|+.+-+..+++ .|..+ +...-.+.+...+..|+.+
T Consensus 105 ~g~~~~v~~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 105 SGNMQTVKLF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-----EIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp TTCHHHHHHH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT-----TSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHH----HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh-----CCCccccccCCccHHHHHHHcChHH
Confidence 5665544433 3445444332 21334444556677655444333 22222 2112223344445677776
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcch
Q 043204 385 VAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVET 440 (504)
Q Consensus 385 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 440 (504)
-+..+++.-..- .. .+..-.+..+...+..|+. ++++.+.+.|..++...
T Consensus 176 ~v~~Ll~~gad~-n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 176 MMILLLDYMTST-NT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHHHT-CT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCCC-Cc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 666555543221 11 2222223223333445553 44555666776666554
No 331
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=30.25 E-value=94 Score=21.49 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHH
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLE 498 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 498 (504)
-++++.+.|+........+ |...++|++.|.+++-
T Consensus 69 qL~qL~eMGF~d~~~ni~A----L~~t~Gdve~AVe~L~ 103 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRA----LQATGGDIQAALELIF 103 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHH----HHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH----HHHhCCCHHHHHHHHH
Confidence 3455555576443333333 3344677888877664
No 332
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.24 E-value=1.9e+02 Score=22.25 Aligned_cols=170 Identities=9% Similarity=-0.086 Sum_probs=87.6
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...-...+..+.+.+..+....+.+.+ . .++..+-...+.++...++.+....+...+ .. ++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l-~d---~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIKAL-KD---EDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-TC---SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH-cC---CCHHHHHHHHH
Confidence 5555555556666666544444444333 2 245555566666667666654443343333 22 34445566666
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
++.+.++.+.. ..+..+... ++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.|..+
T Consensus 99 aL~~~~~~~~~-~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 99 ALGQIGDERAV-EPLIKALKD----EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHHHCCGGGH-HHHHHHTTC----SSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHhCcHHHH-HHHHHHHcC----CCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh
Confidence 66666664333 333333322 23344455566666666643 4444444443 356666677777777777643
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ 238 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (504)
+...+..+. .+. +..+-...+.+..+.
T Consensus 170 -~~~~L~~~l---~d~----~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 170 -VRAAMEKLA---ETG----TGFARKVAVNYLETH 196 (201)
T ss_dssp -HHHHHHHHH---HHC----CHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHH---hCC----CHHHHHHHHHHHHHH
Confidence 445555442 232 344444455555443
No 333
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.98 E-value=2.6e+02 Score=23.83 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCC--HHHHHHHHHH
Q 043204 299 YSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGM--VDEALEVIEE 356 (504)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~ 356 (504)
...++.-|...|+.++|.+.++++...... ...+..++..++-+.++ .+....++..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~ 227 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKS 227 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 345667777778888888888877532111 22334444445554332 3445566665
No 334
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.64 E-value=1.3e+02 Score=23.12 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=6.1
Q ss_pred hhcCCHHHHHHHHH
Q 043204 162 CQCRRSDLALHVFQ 175 (504)
Q Consensus 162 ~~~~~~~~a~~~~~ 175 (504)
+..|+.+-+..+++
T Consensus 114 ~~~~~~~~v~~Ll~ 127 (201)
T 3hra_A 114 AEKGHIDNVKLLLE 127 (201)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455444444433
No 335
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=29.45 E-value=4e+02 Score=25.80 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=13.5
Q ss_pred HHHHHHhcCChhHHHHHHHHh
Q 043204 86 AIRTYARAGQLNEAVSLFKNL 106 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~ 106 (504)
...++.-.|+++.|++.+-..
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc
Confidence 445556677788777766543
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.13 E-value=1.7e+02 Score=21.52 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=30.5
Q ss_pred HhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 70 QMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
.+.+.|+++.. .-..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34455543333 233445555555566777777777766555444444444444444444
No 337
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.79 E-value=1.7e+02 Score=21.37 Aligned_cols=58 Identities=2% Similarity=-0.051 Sum_probs=29.5
Q ss_pred HhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 70 QMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
.+.+.|+++... -..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455444332 233344444445 5677777777776655544444434444444444
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.24 E-value=1.7e+02 Score=21.30 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=28.0
Q ss_pred hhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 71 MKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44455433332 22334444445555666667776666554444444434444444443
No 339
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.17 E-value=53 Score=20.16 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=11.1
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
.+++.+++..-.++++..+++..+.|
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444
No 340
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.96 E-value=1.5e+02 Score=23.88 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcch-------hhHHHHHHHHhc--CCCHHHHHHHHHH
Q 043204 303 AIDLYNEGRIVEGDKVLDEMRTKGFWPSL-------VMYEAKLAALFK--DGMVDEALEVIEE 356 (504)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~--~~~~~~a~~~~~~ 356 (504)
+...+..|+.+.+..+++.+.+.|..++. .-.+.|..+... .|+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc
Confidence 33445567777776677766666554332 233344433322 2666666555554
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.85 E-value=1.6e+02 Score=21.55 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc
Q 043204 175 QEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGK 240 (504)
Q Consensus 175 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (504)
+.+.+.|++++.. -..++..+...+ .-.|.++++.+ .+.+...+..|....+..+...|-
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l----~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEV----RKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHH----HTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHH----HhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455667776654 333444455555 66788888877 666666666666666666666654
No 342
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.83 E-value=1.2e+02 Score=20.30 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHH
Q 043204 417 GRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEA 457 (504)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 457 (504)
.+.+.|.++++.+..+| +..|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 45677777777776665 45666777776665655444
No 343
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.23 E-value=90 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=19.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 49 ASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
-..+..|.+.|.+++|.++|++.....
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 345568899999999999999966553
No 344
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.17 E-value=1.7e+02 Score=20.98 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=37.0
Q ss_pred HhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch
Q 043204 176 EMDFQGCYPDRESYHILMKGLCNDR-RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 176 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+ .+.+...+..|....+..+.+.|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l----~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKAL----MEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHH----HHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHH----HhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355667766644 334455555555 567788888877 6666666666666566666665543
No 345
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.03 E-value=1.9e+02 Score=21.31 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch
Q 043204 175 QEMDFQGCYPDRESYHILMKGLCNDR-RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 175 ~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+ .+.+...+..|....+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l----~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKL----IDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHH----HHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHH----HHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566777766543 34455555555 667788888887 6666666666666666666666643
No 346
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.01 E-value=77 Score=19.26 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=7.1
Q ss_pred hcCCCchhHHHHHH
Q 043204 484 CCNTADLNVCRKTL 497 (504)
Q Consensus 484 ~~~~~~~~~a~~~~ 497 (504)
...+++++.|.+++
T Consensus 31 ~~~~~nve~A~e~L 44 (63)
T 1wji_A 31 MDNGNNLEAALNVL 44 (63)
T ss_dssp HHTTSCHHHHHHHH
T ss_pred HHhCCCHHHHHHHH
Confidence 33344566665554
No 347
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.96 E-value=94 Score=19.07 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc
Q 043204 406 YGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS 450 (504)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (504)
++.+++.++...-++++...++++.+.| ..+...|-.-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3445555555555566666666666655 3444444444444443
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.68 E-value=91 Score=22.69 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=18.9
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043204 158 MDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDR 200 (504)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 200 (504)
+..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333344445555555554444444444444444444433
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.60 E-value=1e+02 Score=22.09 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=19.0
Q ss_pred HHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043204 159 DVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDR 200 (504)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 200 (504)
..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333444455555555554444444444444444444443
No 350
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.19 E-value=1.8e+02 Score=20.86 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=28.2
Q ss_pred hhcCCCCccHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 71 MKGDSCECKDSVFATAIRTYARAG-QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33445433332 233444444444 56667777777766655444444444444444443
No 351
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.12 E-value=1.9e+02 Score=21.07 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=40.9
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch
Q 043204 175 QEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 175 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
+.+.+.|++++.. -..++..+...+..-.|.++++.+ .+.+...+..|....+..+.+.|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l----~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKAL----EGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHH----GGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHH----HHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456677776654 334555555566677788888888 6766666776666666777666643
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.89 E-value=1.1e+02 Score=22.25 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=13.7
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHH
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSV 82 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
++..+...++.-.|.++++.+.+.+...+..|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aT 50 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTT 50 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHH
Confidence 33444444444445555554444433333333
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.49 E-value=4.7e+02 Score=26.73 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=33.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcC
Q 043204 440 TYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI----SVWSSLVASVCCN 486 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~ 486 (504)
-|..++..+-+.+-++-+.++-+...+.--.-|. ..|..+.++.|..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 6788999999999999999999988864222222 2456666665543
No 354
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.77 E-value=2.5e+02 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.048 Sum_probs=17.1
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHcCCC
Q 043204 231 LLFALCDQGKIQDAMQILEKILRKGLK 257 (504)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 257 (504)
.+...+..|+.+-+..+++.+.+.|..
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 344455667777776777777776643
No 355
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.75 E-value=1.4e+02 Score=21.28 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=23.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444445555666666666665554444444334444444443
No 356
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=24.52 E-value=54 Score=19.64 Aligned_cols=22 Identities=9% Similarity=-0.117 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHhhcCCCCcch
Q 043204 129 SKLEAAHILFLRSCYGWEVKSR 150 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~ 150 (504)
-+++.|...|..+.....++|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 4555555555555444444444
No 357
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.43 E-value=3.4e+02 Score=23.31 Aligned_cols=48 Identities=6% Similarity=-0.040 Sum_probs=24.4
Q ss_pred hHHHHHHHHhhhCCCCccH--HHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 97 NEAVSLFKNLSQFNCVNWT--QSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
....++-..+..-+.+|.- -+....+....+.+++..|..+-+++.+.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3344444444444444421 23445555566666666666666666543
No 358
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.25 E-value=5.8e+02 Score=25.93 Aligned_cols=172 Identities=12% Similarity=-0.000 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhC--CCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHH
Q 043204 79 KDSVFATAIRTYARAGQ---LNEAVSLFKNLSQF--NCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQS 153 (504)
Q Consensus 79 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (504)
+...-..++...+..|. .+.|.+.|+..... +....+..-..+...-.+.|..++-..+++...... +..-
T Consensus 685 ~~~lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~----~~~e 760 (909)
T 4fke_A 685 DQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ----LVNE 760 (909)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC----SHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC----CHHH
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 043204 154 LNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLF 233 (504)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (504)
-..++.+++...+.+...++++.....+..........+..........+.|.+.+..=+.. ...........+..++.
T Consensus 761 k~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~-l~~~~~~~~~~~~~~i~ 839 (909)
T 4fke_A 761 ADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKK-LFQDYGGGSFSFSNLIQ 839 (909)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTT-TTTSSSSCCCCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHhCCCchHHHHHHH
Q ss_pred HHHhcCchhHHHHHHHHHHHcC
Q 043204 234 ALCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~ 255 (504)
.....-..++-.+-++...+..
T Consensus 840 ~~~~~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 840 GVTRRFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHhhC
No 359
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.17 E-value=1.2e+02 Score=20.29 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 043204 59 NRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAV 100 (504)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (504)
.+.+.|.++++.+...| +.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 46778888888888877 345666677766656555444
No 360
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.14 E-value=1.4e+02 Score=18.88 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=6.3
Q ss_pred hhHHHHHHHHhhhC
Q 043204 96 LNEAVSLFKNLSQF 109 (504)
Q Consensus 96 ~~~a~~~~~~~~~~ 109 (504)
.-.+.++++.+.+.
T Consensus 33 ~~s~~el~~~l~~~ 46 (83)
T 2fu4_A 33 HVSAEDLYKRLIDM 46 (83)
T ss_dssp SBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 33444444444443
No 361
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.01 E-value=2.6e+02 Score=21.92 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=28.2
Q ss_pred HHHHHHHhc---CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCC
Q 043204 301 AMAIDLYNE---GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDG 345 (504)
Q Consensus 301 ~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (504)
.+|+++-++ .+.+.|+-.+.+|.+.| .|....=..++-+.-..|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 345555554 78888888899999888 655444444444444444
No 362
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.87 E-value=96 Score=16.80 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=17.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
.++++.+.|+..+. . ..++...+++++.|..++
T Consensus 7 ~i~~L~~MGF~~~~-a----~~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 7 AVEELSGMGFTEEE-A----HNALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHTTTSCHHH-H----HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHH-H----HHHHHHhCcCHHHHHHHH
Confidence 35566666764322 2 222333355688877665
No 363
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.62 E-value=2e+02 Score=23.50 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCc-------chhhHHHHHHHHh--cCCCHHHHHHHHHH
Q 043204 304 IDLYNEGRIVEGDKVLDEMRTKGFWP-------SLVMYEAKLAALF--KDGMVDEALEVIEE 356 (504)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 356 (504)
...++.|+.+.+..+++...+.+... +..-.+.|..+.. +.|+.+-+..+++.
T Consensus 18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 34456688888877887776655332 3334455555543 35777777666664
No 364
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.53 E-value=2e+02 Score=21.20 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=20.2
Q ss_pred HHHHHhcC-ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 87 IRTYARAG-QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 87 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
+..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 23 l~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 23 LEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33333333 45556666666655544444443333344444433
No 365
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.50 E-value=1.1e+02 Score=21.74 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=29.9
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSL 102 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (504)
.|--.|...+..++.+-|.++++-..+.| +...|.+.+-.|-..=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34455556666666666666666666654 444555555555554455554443
No 366
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.85 E-value=2.6e+02 Score=21.39 Aligned_cols=155 Identities=13% Similarity=-0.048 Sum_probs=77.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHH
Q 043204 78 CKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLL 157 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 157 (504)
++...-...+..+.+.++.+....+.+.+.. ++..+-...+.++...++.+.. ..+..+... ++...-...
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~d----~~~~vr~~a 96 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDERAV-EPLIKALKD----EDGWVRQSA 96 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTTC----SSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHcC----CCHHHHHHH
Confidence 4444555555555555554433333333321 2333444555555555554333 333333322 244444556
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 043204 158 MDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD 237 (504)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (504)
+.++.+.++.+....+ ..+.. .++...-...+.++.+.++.+ +...+..+ .. .++..+-...+.++..
T Consensus 97 ~~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~----l~---d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 97 AVALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKA----LK---DEDGWVRQSAADALGE 164 (201)
T ss_dssp HHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHH----TT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHH----Hc---CCCHHHHHHHHHHHHH
Confidence 6666666665433333 33333 356666666677777666643 33333333 22 2455666666666666
Q ss_pred cCchhHHHHHHHHHHHc
Q 043204 238 QGKIQDAMQILEKILRK 254 (504)
Q Consensus 238 ~g~~~~a~~~~~~~~~~ 254 (504)
.|+ ..+...+..+.+.
T Consensus 165 ~~~-~~~~~~L~~~l~d 180 (201)
T 3ltj_A 165 IGG-ERVRAAMEKLAET 180 (201)
T ss_dssp HCS-HHHHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHHhC
Confidence 665 4455555555543
No 367
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.67 E-value=2.1e+02 Score=20.19 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=23.8
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 043204 67 VIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
+|+.+....+.|+...--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555544444333334445566777777777776654
No 368
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.47 E-value=2.7e+02 Score=21.53 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=9.4
Q ss_pred HHHHHHhcCChh---HHHHHHHHHH
Q 043204 14 LSQIIKKQKSPL---TALKIFKEAK 35 (504)
Q Consensus 14 l~~~~~~~~~~~---~A~~~~~~~~ 35 (504)
.+.-+.+.|+++ +|-++...|.
T Consensus 37 ~L~eLirs~~PeDL~~AN~LiK~m~ 61 (186)
T 1oxz_A 37 MLARLLKSSHPEDLRAANKLIKEMV 61 (186)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHh
Confidence 334444444433 4444444444
No 369
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=22.30 E-value=1.2e+02 Score=17.33 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 454 QYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 454 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
.+.-.+++.+|- -..+..+..+. +..++||.+.|...+=.+.+
T Consensus 4 ~e~~v~~L~EMF---P~~~~~~ik~~---L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 4 HESKLSILMDMF---PAISKSKLQVH---LLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHHC---SSSCHHHHHHH---HHHTTTCSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHC---CCCCHHHHHHH---HHHcCCCHHHHHHHHHhccc
Confidence 345556666663 11233333333 45567779999888766643
No 370
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.28 E-value=4e+02 Score=23.37 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
...++.-|...|+.++|.+.++++..
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 45566667777777777777776643
No 371
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.09 E-value=4.9e+02 Score=24.30 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=23.1
Q ss_pred CcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 043204 437 CVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPD 472 (504)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 472 (504)
+......|.+-|.+.|++-+|-+++..+...+..++
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~ 251 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFDIT 251 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCC
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCC
Confidence 344455566677778888888888877776554443
No 372
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.94 E-value=2.9e+02 Score=21.62 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=3.4
Q ss_pred HhcCchhH
Q 043204 236 CDQGKIQD 243 (504)
Q Consensus 236 ~~~g~~~~ 243 (504)
++.|+.+.
T Consensus 17 ~~~g~~~~ 24 (240)
T 3eu9_A 17 TQYGIYER 24 (240)
T ss_dssp HHTTCHHH
T ss_pred HHcCChHH
Confidence 34444433
No 373
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.88 E-value=5.5e+02 Score=24.84 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=12.2
Q ss_pred HccCCHHHHHHHHHHH
Q 043204 449 CSIGKQYEAVMWLEEM 464 (504)
Q Consensus 449 ~~~g~~~~a~~~~~~~ 464 (504)
...|+++.|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5678888888777776
No 374
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.60 E-value=1.7e+02 Score=18.75 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=22.1
Q ss_pred HhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHh
Q 043204 35 KEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQM 71 (504)
Q Consensus 35 ~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 71 (504)
+.+-|++.|++.||+-+...+-+..-..++..+.+.+
T Consensus 26 L~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 26 LQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4455677778888887776554444444455444443
No 375
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.59 E-value=3.8e+02 Score=25.23 Aligned_cols=87 Identities=8% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHh--hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 043204 154 LNLLMDVLC--QCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTL 231 (504)
Q Consensus 154 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (504)
|..-+..+. ...+.+.......++..+=.--+..-...++..|.+.|-.+.|.++++.+ -..-+. +...+ ..
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~----g~k~l~-~g~~g-eA 555 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTL----GNQMLS-AHNII-ES 555 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHH----HC-------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH----HHHHHH-CccHH-HH
Q ss_pred HHHHHhcCchhHHHH
Q 043204 232 LFALCDQGKIQDAMQ 246 (504)
Q Consensus 232 ~~~~~~~g~~~~a~~ 246 (504)
+..|++.|+++.+..
T Consensus 556 L~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 556 IANFSRAGKYELVKS 570 (570)
T ss_dssp ---------------
T ss_pred HHHHHHcCChhhccC
No 376
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.58 E-value=2.9e+02 Score=21.59 Aligned_cols=42 Identities=14% Similarity=-0.109 Sum_probs=27.2
Q ss_pred HHHHHHhc---CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc
Q 043204 302 MAIDLYNE---GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK 343 (504)
Q Consensus 302 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (504)
+|+++-++ .+.+.|+-.+.+|++.|-.|....=..++-+.-.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 45555554 7888888889999888866554444444444433
No 377
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=20.57 E-value=1.1e+02 Score=16.08 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=16.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 461 LEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
++++.+.|+..+.. ..++...+++++.|..++
T Consensus 8 i~~L~~mGf~~~~a-----~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 8 IAQLVSMGFDPLEA-----AQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHTTCCHHHH-----HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHH-----HHHHHHcCCCHHHHHHHH
Confidence 44555557643322 223334466688877654
No 378
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.43 E-value=4.3e+02 Score=23.09 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR--LNEATHLLYSMFWRISQKGSGEDIVIYRT 230 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (504)
..+.++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+ ...|+-........
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L----~~~glls~~q~~~G 293 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSL----WKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHH----HHTTCSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHH----HHCCCCCHHHHHHH
Confidence 3577888899999999999999998742111 12334444445554433 34566666666 56665544444333
Q ss_pred HHH
Q 043204 231 LLF 233 (504)
Q Consensus 231 l~~ 233 (504)
+..
T Consensus 294 f~~ 296 (358)
T 3eiq_C 294 YER 296 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 379
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=20.11 E-value=2.7e+02 Score=23.18 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=16.8
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhh
Q 043204 119 NTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
|.+++-+...|++..|.++++++.
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHCC
Confidence 666777777777777777777653
Done!