Query 043205
Match_columns 207
No_of_seqs 190 out of 2418
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4178 Soluble epoxide hydrol 100.0 1.8E-29 4E-34 202.0 14.8 188 2-207 20-221 (322)
2 PLN02824 hydrolase, alpha/beta 99.9 7.3E-22 1.6E-26 160.6 15.5 113 3-118 7-137 (294)
3 PRK03592 haloalkane dehalogena 99.9 1.3E-21 2.8E-26 159.3 16.4 112 4-118 7-128 (295)
4 PRK00870 haloalkane dehalogena 99.9 1.9E-21 4E-26 158.9 15.8 113 4-118 19-150 (302)
5 TIGR02240 PHA_depoly_arom poly 99.9 4.8E-21 1E-25 154.5 13.4 113 4-119 2-127 (276)
6 PRK03204 haloalkane dehalogena 99.9 1.4E-20 3.1E-25 152.8 14.7 112 4-118 14-136 (286)
7 PLN02679 hydrolase, alpha/beta 99.8 1.5E-19 3.2E-24 151.4 14.7 109 7-118 64-191 (360)
8 PLN02578 hydrolase 99.8 2.4E-19 5.3E-24 149.8 15.7 109 7-118 69-187 (354)
9 TIGR03343 biphenyl_bphD 2-hydr 99.8 2.2E-19 4.8E-24 144.7 14.5 112 5-118 6-136 (282)
10 TIGR03056 bchO_mg_che_rel puta 99.8 3.3E-19 7.2E-24 142.8 14.8 112 5-119 7-131 (278)
11 PLN02211 methyl indole-3-aceta 99.8 2.9E-19 6.4E-24 144.3 11.9 108 10-118 3-122 (273)
12 PRK10749 lysophospholipase L2; 99.8 2.1E-18 4.6E-23 142.8 15.3 114 5-118 32-166 (330)
13 PLN02965 Probable pheophorbida 99.8 6.8E-19 1.5E-23 140.5 11.3 91 26-118 5-107 (255)
14 PLN03087 BODYGUARD 1 domain co 99.8 2.9E-18 6.2E-23 147.4 15.8 114 4-119 176-310 (481)
15 PLN03084 alpha/beta hydrolase 99.8 2.6E-18 5.6E-23 144.6 14.9 109 8-119 109-233 (383)
16 PRK10673 acyl-CoA esterase; Pr 99.8 2.5E-18 5.5E-23 136.5 12.5 93 23-118 15-116 (255)
17 PRK10349 carboxylesterase BioH 99.8 1.4E-18 3.1E-23 138.5 10.9 99 16-118 4-109 (256)
18 PRK08775 homoserine O-acetyltr 99.8 7.1E-19 1.5E-23 146.4 9.3 110 8-119 40-174 (343)
19 PLN02385 hydrolase; alpha/beta 99.8 3.6E-18 7.7E-23 142.4 13.4 110 9-118 67-197 (349)
20 PRK11126 2-succinyl-6-hydroxy- 99.8 4.4E-18 9.6E-23 134.2 12.2 91 24-118 2-102 (242)
21 PRK06489 hypothetical protein; 99.8 4E-18 8.6E-23 142.8 12.3 107 10-118 46-189 (360)
22 PHA02857 monoglyceride lipase; 99.8 1.1E-17 2.3E-22 134.8 13.9 113 7-119 4-133 (276)
23 PLN02298 hydrolase, alpha/beta 99.8 1.1E-17 2.4E-22 138.3 13.8 112 7-118 36-169 (330)
24 TIGR03611 RutD pyrimidine util 99.8 7.9E-18 1.7E-22 132.6 12.0 100 16-118 1-115 (257)
25 TIGR01392 homoserO_Ac_trn homo 99.8 4.4E-18 9.5E-23 142.0 10.3 108 10-119 12-163 (351)
26 PF12697 Abhydrolase_6: Alpha/ 99.7 1.8E-17 3.8E-22 127.5 12.0 90 27-119 1-102 (228)
27 TIGR01250 pro_imino_pep_2 prol 99.7 3.7E-17 8.1E-22 130.6 14.2 110 7-118 5-131 (288)
28 TIGR02427 protocat_pcaD 3-oxoa 99.7 1.1E-17 2.4E-22 130.7 10.0 100 16-118 2-114 (251)
29 KOG4409 Predicted hydrolase/ac 99.7 1.6E-16 3.4E-21 128.5 15.5 98 23-123 89-200 (365)
30 PRK00175 metX homoserine O-ace 99.7 2.1E-17 4.6E-22 139.3 10.6 108 10-119 29-183 (379)
31 TIGR01249 pro_imino_pep_1 prol 99.7 6.5E-17 1.4E-21 132.5 12.3 111 5-118 5-130 (306)
32 TIGR03695 menH_SHCHC 2-succiny 99.7 9.1E-17 2E-21 125.2 11.5 92 24-118 1-105 (251)
33 PRK14875 acetoin dehydrogenase 99.7 1.7E-16 3.7E-21 132.8 13.4 108 8-118 113-232 (371)
34 PRK07581 hypothetical protein; 99.7 6.3E-17 1.4E-21 134.3 9.4 108 10-119 22-160 (339)
35 COG2267 PldB Lysophospholipase 99.7 6.4E-16 1.4E-20 126.1 13.9 116 5-120 11-144 (298)
36 PRK05855 short chain dehydroge 99.7 6.1E-16 1.3E-20 136.4 13.8 112 4-117 3-130 (582)
37 TIGR01738 bioH putative pimelo 99.7 3.8E-16 8.3E-21 121.7 10.6 93 23-118 2-100 (245)
38 PLN02894 hydrolase, alpha/beta 99.7 2E-15 4.3E-20 128.2 15.7 94 23-119 104-212 (402)
39 COG1647 Esterase/lipase [Gener 99.7 6.8E-15 1.5E-19 112.1 15.3 95 24-120 15-120 (243)
40 TIGR03101 hydr2_PEP hydrolase, 99.6 5.1E-15 1.1E-19 118.7 14.2 96 24-119 25-135 (266)
41 PLN02652 hydrolase; alpha/beta 99.6 7.2E-15 1.6E-19 124.3 12.9 106 12-118 119-245 (395)
42 PLN02980 2-oxoglutarate decarb 99.6 9.7E-15 2.1E-19 141.5 15.2 112 4-118 1344-1480(1655)
43 PRK11071 esterase YqiA; Provis 99.6 2.2E-14 4.8E-19 109.9 12.1 89 25-119 2-94 (190)
44 PLN02511 hydrolase 99.6 2.1E-14 4.6E-19 121.5 13.0 97 23-119 99-211 (388)
45 KOG1454 Predicted hydrolase/ac 99.5 1.9E-14 4.1E-19 118.8 9.0 96 23-120 57-168 (326)
46 PF12695 Abhydrolase_5: Alpha/ 99.5 1.3E-13 2.9E-18 100.1 11.6 90 26-116 1-93 (145)
47 KOG1455 Lysophospholipase [Lip 99.5 1.4E-13 3.1E-18 109.6 12.2 111 9-119 33-165 (313)
48 PRK10985 putative hydrolase; P 99.5 3.5E-13 7.6E-18 111.4 14.5 96 24-119 58-169 (324)
49 TIGR01607 PST-A Plasmodium sub 99.5 8.7E-14 1.9E-18 115.4 10.9 108 11-118 5-185 (332)
50 KOG2564 Predicted acetyltransf 99.5 1.2E-13 2.6E-18 108.6 10.5 93 23-116 73-180 (343)
51 cd00707 Pancreat_lipase_like P 99.5 1.7E-13 3.7E-18 110.8 11.3 97 23-119 35-148 (275)
52 TIGR03100 hydr1_PEP hydrolase, 99.5 9.4E-13 2E-17 106.4 13.6 96 23-119 25-135 (274)
53 TIGR03230 lipo_lipase lipoprot 99.5 6.1E-13 1.3E-17 113.0 12.8 97 23-119 40-155 (442)
54 PRK10566 esterase; Provisional 99.5 6.8E-13 1.5E-17 105.2 12.4 101 15-115 14-139 (249)
55 PRK05077 frsA fermentation/res 99.5 1.4E-12 3E-17 111.2 15.0 96 24-119 194-301 (414)
56 PRK13604 luxD acyl transferase 99.5 2.1E-12 4.5E-17 104.8 13.8 106 12-119 18-142 (307)
57 KOG2984 Predicted hydrolase [G 99.4 6.9E-14 1.5E-18 105.3 4.2 115 3-119 20-150 (277)
58 PLN02872 triacylglycerol lipas 99.4 4.1E-13 8.8E-18 113.5 8.9 114 5-119 45-198 (395)
59 PRK06765 homoserine O-acetyltr 99.4 9.1E-13 2E-17 111.3 10.3 105 13-119 40-197 (389)
60 TIGR01836 PHA_synth_III_C poly 99.4 2.8E-12 6.2E-17 107.0 12.5 95 24-120 62-173 (350)
61 PLN00021 chlorophyllase 99.4 2E-12 4.4E-17 106.2 10.6 95 23-117 51-165 (313)
62 TIGR01840 esterase_phb esteras 99.4 5.6E-12 1.2E-16 98.1 11.6 97 23-119 12-131 (212)
63 TIGR02821 fghA_ester_D S-formy 99.4 1.8E-11 4E-16 98.9 13.9 96 24-119 42-174 (275)
64 PF06342 DUF1057: Alpha/beta h 99.4 1.4E-11 2.9E-16 97.7 12.3 93 25-120 36-139 (297)
65 COG0596 MhpC Predicted hydrola 99.4 1.9E-11 4.1E-16 94.9 12.6 107 11-119 7-124 (282)
66 KOG2382 Predicted alpha/beta h 99.3 1.7E-11 3.7E-16 99.0 12.0 96 23-118 51-159 (315)
67 TIGR03502 lipase_Pla1_cef extr 99.3 3.5E-11 7.6E-16 108.3 12.5 99 6-104 420-576 (792)
68 PF07819 PGAP1: PGAP1-like pro 99.3 6.2E-11 1.3E-15 93.1 12.5 98 23-120 3-125 (225)
69 PF03096 Ndr: Ndr family; Int 99.3 8.4E-11 1.8E-15 94.0 13.0 112 6-120 1-136 (283)
70 TIGR01838 PHA_synth_I poly(R)- 99.3 2.6E-11 5.7E-16 105.6 11.0 103 16-120 177-304 (532)
71 PLN02442 S-formylglutathione h 99.3 1E-10 2.2E-15 95.0 13.4 96 24-119 47-179 (283)
72 PF00975 Thioesterase: Thioest 99.3 8E-11 1.7E-15 92.2 12.3 94 25-119 1-105 (229)
73 PRK07868 acyl-CoA synthetase; 99.3 3.7E-11 8E-16 112.6 11.0 95 23-118 66-177 (994)
74 PRK11460 putative hydrolase; P 99.2 8.5E-11 1.9E-15 92.8 11.0 96 23-118 15-138 (232)
75 TIGR00976 /NonD putative hydro 99.2 7.3E-11 1.6E-15 104.2 10.9 107 12-118 5-132 (550)
76 PF00561 Abhydrolase_1: alpha/ 99.2 6.8E-11 1.5E-15 91.7 8.4 64 52-117 1-78 (230)
77 KOG2931 Differentiation-relate 99.2 3.8E-10 8.3E-15 89.6 12.2 113 5-120 23-159 (326)
78 KOG2565 Predicted hydrolases o 99.1 1.7E-10 3.8E-15 94.2 7.9 182 3-186 123-355 (469)
79 PRK10162 acetyl esterase; Prov 99.1 1.6E-09 3.5E-14 89.4 11.3 96 24-119 81-196 (318)
80 PF12146 Hydrolase_4: Putative 99.1 9.4E-10 2E-14 72.1 7.5 63 13-75 1-78 (79)
81 PF12740 Chlorophyllase2: Chlo 99.1 2.1E-09 4.5E-14 85.2 10.8 97 22-118 15-131 (259)
82 COG2021 MET2 Homoserine acetyl 99.0 1E-09 2.2E-14 90.1 8.7 106 12-119 34-183 (368)
83 PF06028 DUF915: Alpha/beta hy 99.0 1.4E-09 3.1E-14 86.6 8.0 98 24-121 11-146 (255)
84 COG3319 Thioesterase domains o 99.0 4.6E-09 1E-13 83.6 10.5 93 25-119 1-104 (257)
85 PF01674 Lipase_2: Lipase (cla 99.0 2.8E-09 6.1E-14 83.0 8.8 77 25-104 2-96 (219)
86 PF05728 UPF0227: Uncharacteri 99.0 6.3E-09 1.4E-13 79.3 10.5 88 27-120 2-93 (187)
87 PF10230 DUF2305: Uncharacteri 99.0 9.6E-09 2.1E-13 82.7 11.9 96 24-119 2-123 (266)
88 PF06500 DUF1100: Alpha/beta h 99.0 5.1E-09 1.1E-13 87.9 10.1 113 8-120 169-298 (411)
89 COG3208 GrsT Predicted thioest 99.0 1.5E-08 3.3E-13 79.0 11.9 94 23-119 6-113 (244)
90 PF01738 DLH: Dienelactone hyd 98.9 1.1E-08 2.3E-13 79.8 10.7 93 23-116 13-130 (218)
91 PLN02733 phosphatidylcholine-s 98.9 8.7E-09 1.9E-13 88.1 10.7 112 8-120 72-203 (440)
92 PRK10252 entF enterobactin syn 98.9 7.3E-09 1.6E-13 99.6 11.4 95 21-117 1065-1170(1296)
93 PF02230 Abhydrolase_2: Phosph 98.9 5E-09 1.1E-13 81.7 8.5 98 23-120 13-142 (216)
94 KOG1838 Alpha/beta hydrolase [ 98.9 6.3E-08 1.4E-12 81.0 15.0 117 4-120 93-237 (409)
95 PF07224 Chlorophyllase: Chlor 98.9 8E-09 1.7E-13 81.1 8.2 96 22-117 44-156 (307)
96 COG1506 DAP2 Dipeptidyl aminop 98.9 2.3E-08 5E-13 89.6 11.5 106 12-118 374-507 (620)
97 PF06821 Ser_hydrolase: Serine 98.9 2.2E-08 4.7E-13 75.4 9.3 89 27-119 1-92 (171)
98 KOG1552 Predicted alpha/beta h 98.8 3.4E-08 7.4E-13 77.5 10.1 92 24-117 60-162 (258)
99 TIGR01839 PHA_synth_II poly(R) 98.8 2.8E-08 6.1E-13 86.5 10.5 97 24-120 215-330 (560)
100 PF00151 Lipase: Lipase; Inte 98.8 1.4E-08 3E-13 84.1 8.1 97 24-120 71-189 (331)
101 PF10503 Esterase_phd: Esteras 98.8 6.5E-08 1.4E-12 75.5 10.7 95 24-118 16-132 (220)
102 COG0400 Predicted esterase [Ge 98.8 3.9E-08 8.5E-13 76.0 9.4 94 24-120 18-136 (207)
103 KOG4667 Predicted esterase [Li 98.8 6.4E-08 1.4E-12 74.0 10.0 100 20-120 29-141 (269)
104 KOG4391 Predicted alpha/beta h 98.8 1.5E-08 3.3E-13 77.5 6.6 114 3-116 51-182 (300)
105 COG0429 Predicted hydrolase of 98.7 3.1E-07 6.7E-12 74.7 13.1 96 24-119 75-186 (345)
106 PF00326 Peptidase_S9: Prolyl 98.7 3.3E-08 7.2E-13 76.7 7.4 80 41-120 4-101 (213)
107 PF03403 PAF-AH_p_II: Platelet 98.7 6.6E-08 1.4E-12 81.6 9.4 98 22-120 98-264 (379)
108 PF05057 DUF676: Putative seri 98.7 4.9E-08 1.1E-12 76.3 7.7 96 25-120 5-127 (217)
109 PF07859 Abhydrolase_3: alpha/ 98.7 6.7E-08 1.4E-12 74.7 7.6 92 27-118 1-110 (211)
110 COG0412 Dienelactone hydrolase 98.7 2.4E-07 5.3E-12 73.3 10.8 94 25-119 28-147 (236)
111 COG4814 Uncharacterized protei 98.7 1.8E-07 4E-12 73.1 9.2 94 26-119 47-177 (288)
112 KOG2624 Triglyceride lipase-ch 98.7 1.2E-07 2.6E-12 80.1 8.8 116 5-120 49-201 (403)
113 COG3545 Predicted esterase of 98.6 3.3E-07 7.1E-12 68.0 9.5 94 25-120 3-96 (181)
114 PRK10115 protease 2; Provision 98.6 5E-07 1.1E-11 81.8 12.1 108 11-118 424-559 (686)
115 COG1075 LipA Predicted acetylt 98.6 1.4E-07 3.1E-12 78.4 7.2 94 25-120 60-166 (336)
116 COG3458 Acetyl esterase (deace 98.5 4E-07 8.6E-12 72.0 8.2 107 11-119 64-211 (321)
117 PF05448 AXE1: Acetyl xylan es 98.5 1.5E-06 3.2E-11 71.8 11.8 93 24-118 83-209 (320)
118 PRK04940 hypothetical protein; 98.5 8.5E-07 1.8E-11 66.7 9.1 88 27-120 2-94 (180)
119 KOG3975 Uncharacterized conser 98.5 4E-06 8.6E-11 65.6 12.2 115 4-118 1-147 (301)
120 PF05990 DUF900: Alpha/beta hy 98.5 2.1E-06 4.6E-11 67.8 10.9 97 23-119 17-138 (233)
121 PF02129 Peptidase_S15: X-Pro 98.5 9.1E-07 2E-11 71.4 9.0 96 24-119 20-137 (272)
122 PF06057 VirJ: Bacterial virul 98.5 1E-06 2.2E-11 66.7 8.5 94 26-119 4-108 (192)
123 COG3509 LpqC Poly(3-hydroxybut 98.5 1.6E-06 3.6E-11 69.4 10.0 111 8-118 39-179 (312)
124 KOG3847 Phospholipase A2 (plat 98.5 3.1E-07 6.7E-12 73.9 5.5 93 23-116 117-273 (399)
125 PF12715 Abhydrolase_7: Abhydr 98.4 1E-06 2.2E-11 73.3 8.6 92 24-116 115-258 (390)
126 COG3571 Predicted hydrolase of 98.4 3.1E-06 6.6E-11 62.1 10.0 94 26-121 16-127 (213)
127 COG2945 Predicted hydrolase of 98.4 4.4E-06 9.5E-11 63.0 10.8 93 24-117 28-136 (210)
128 KOG1553 Predicted alpha/beta h 98.4 1.2E-06 2.7E-11 71.5 7.6 88 26-116 245-343 (517)
129 COG0657 Aes Esterase/lipase [L 98.4 3.1E-06 6.7E-11 69.6 9.8 96 24-119 79-192 (312)
130 TIGR01849 PHB_depoly_PhaZ poly 98.4 1.1E-05 2.5E-10 68.3 13.2 93 25-121 103-211 (406)
131 smart00824 PKS_TE Thioesterase 98.4 5.8E-06 1.3E-10 63.0 10.5 88 29-118 2-102 (212)
132 PF02273 Acyl_transf_2: Acyl t 98.2 2.1E-05 4.5E-10 61.6 10.7 107 7-115 5-131 (294)
133 COG4188 Predicted dienelactone 98.2 6.1E-06 1.3E-10 68.3 7.9 81 24-104 71-180 (365)
134 KOG4627 Kynurenine formamidase 98.2 5.1E-06 1.1E-10 63.4 6.7 96 24-119 67-173 (270)
135 PF08538 DUF1749: Protein of u 98.2 2.3E-05 5E-10 63.6 10.9 97 24-120 33-150 (303)
136 PLN02606 palmitoyl-protein thi 98.2 1.7E-05 3.6E-10 64.3 9.9 97 24-120 26-134 (306)
137 PF02450 LCAT: Lecithin:choles 98.2 1.7E-05 3.6E-10 67.4 10.3 82 39-120 66-162 (389)
138 PF00756 Esterase: Putative es 98.2 7.5E-06 1.6E-10 64.9 7.4 52 68-119 99-151 (251)
139 PRK10439 enterobactin/ferric e 98.2 5.5E-05 1.2E-09 64.7 12.9 94 24-118 209-323 (411)
140 COG4099 Predicted peptidase [G 98.1 3E-05 6.5E-10 62.4 10.3 43 77-119 263-305 (387)
141 PF05677 DUF818: Chlamydia CHL 98.1 0.0001 2.2E-09 60.5 13.5 115 4-118 112-254 (365)
142 KOG2100 Dipeptidyl aminopeptid 98.1 3.6E-05 7.8E-10 70.5 12.0 112 5-118 499-644 (755)
143 KOG3724 Negative regulator of 98.1 1.9E-05 4E-10 70.7 9.5 97 24-120 89-222 (973)
144 KOG2281 Dipeptidyl aminopeptid 98.1 8.6E-06 1.9E-10 71.3 6.8 91 24-114 642-758 (867)
145 cd00312 Esterase_lipase Estera 98.1 1.1E-05 2.4E-10 70.4 7.2 94 24-119 95-214 (493)
146 KOG2112 Lysophospholipase [Lip 98.0 2.2E-05 4.8E-10 59.9 7.5 94 24-117 3-127 (206)
147 PF02089 Palm_thioest: Palmito 98.0 4.6E-05 9.9E-10 61.3 9.1 97 24-120 5-118 (279)
148 PTZ00472 serine carboxypeptida 98.0 0.00011 2.4E-09 63.7 11.6 112 7-118 50-216 (462)
149 COG2272 PnbA Carboxylesterase 98.0 0.00018 3.8E-09 61.7 12.0 107 13-119 79-218 (491)
150 PF05577 Peptidase_S28: Serine 97.9 7.3E-05 1.6E-09 64.4 9.9 100 24-123 29-153 (434)
151 KOG1515 Arylacetamide deacetyl 97.9 0.00041 8.8E-09 57.6 13.7 98 24-121 90-210 (336)
152 PLN02633 palmitoyl protein thi 97.9 0.00012 2.5E-09 59.6 10.1 96 24-119 25-132 (314)
153 COG3150 Predicted esterase [Ge 97.9 9.1E-05 2E-09 54.7 8.2 87 27-119 2-92 (191)
154 PF03959 FSH1: Serine hydrolas 97.9 0.00012 2.5E-09 57.1 9.0 94 23-119 3-146 (212)
155 KOG3101 Esterase D [General fu 97.8 1.9E-05 4.1E-10 60.5 4.0 97 24-120 44-178 (283)
156 COG3243 PhaC Poly(3-hydroxyalk 97.8 7.2E-05 1.6E-09 62.9 7.1 95 24-120 107-219 (445)
157 KOG2541 Palmitoyl protein thio 97.8 0.00064 1.4E-08 54.0 11.9 96 25-120 24-130 (296)
158 PF12048 DUF3530: Protein of u 97.8 0.0016 3.4E-08 53.8 14.5 97 24-120 87-231 (310)
159 KOG3043 Predicted hydrolase re 97.8 0.00011 2.3E-09 56.9 6.8 111 8-119 22-155 (242)
160 PRK05371 x-prolyl-dipeptidyl a 97.7 0.00032 7E-09 64.5 9.7 75 43-117 271-372 (767)
161 COG4782 Uncharacterized protei 97.7 0.0004 8.6E-09 57.4 9.2 93 24-116 116-232 (377)
162 COG4757 Predicted alpha/beta h 97.6 0.00015 3.2E-09 56.5 6.2 99 12-112 14-132 (281)
163 PLN02517 phosphatidylcholine-s 97.6 0.00052 1.1E-08 60.4 10.0 81 38-120 156-265 (642)
164 PF06441 EHN: Epoxide hydrolas 97.6 0.00014 3E-09 50.8 5.3 43 2-44 66-112 (112)
165 KOG4840 Predicted hydrolases o 97.6 0.00032 6.9E-09 54.4 7.0 95 24-118 36-144 (299)
166 PF09752 DUF2048: Uncharacteri 97.5 0.0012 2.5E-08 54.8 10.1 94 24-117 92-209 (348)
167 PF00135 COesterase: Carboxyle 97.5 0.00038 8.3E-09 61.0 7.8 108 12-119 107-246 (535)
168 cd00741 Lipase Lipase. Lipase 97.4 0.00052 1.1E-08 50.4 5.9 53 67-119 10-68 (153)
169 COG2936 Predicted acyl esteras 97.3 0.0018 3.8E-08 57.0 9.5 108 12-119 28-160 (563)
170 PF01764 Lipase_3: Lipase (cla 97.3 0.00054 1.2E-08 49.3 5.5 36 66-103 49-84 (140)
171 PF10340 DUF2424: Protein of u 97.3 0.0023 4.9E-08 53.7 9.7 90 24-117 122-234 (374)
172 KOG3967 Uncharacterized conser 97.3 0.0033 7.1E-08 48.5 9.3 94 24-119 101-228 (297)
173 PF11144 DUF2920: Protein of u 97.2 0.0052 1.1E-07 51.9 10.2 36 84-119 185-220 (403)
174 COG2382 Fes Enterochelin ester 97.0 0.0058 1.3E-07 49.5 8.8 96 24-119 98-213 (299)
175 COG0627 Predicted esterase [Ge 97.0 0.0031 6.7E-08 52.0 7.3 98 24-121 54-190 (316)
176 KOG2369 Lecithin:cholesterol a 97.0 0.0012 2.5E-08 56.4 4.8 82 38-119 124-226 (473)
177 COG3946 VirJ Type IV secretory 96.9 0.0034 7.4E-08 52.7 7.1 81 26-106 262-349 (456)
178 PF08840 BAAT_C: BAAT / Acyl-C 96.9 0.003 6.5E-08 49.2 6.6 52 67-119 5-57 (213)
179 PF11187 DUF2974: Protein of u 96.9 0.02 4.3E-07 45.0 11.1 86 23-120 36-125 (224)
180 COG2819 Predicted hydrolase of 96.9 0.0019 4E-08 51.6 5.1 39 81-119 135-173 (264)
181 KOG2182 Hydrolytic enzymes of 96.9 0.012 2.5E-07 50.8 10.1 98 23-120 85-209 (514)
182 KOG2183 Prolylcarboxypeptidase 96.9 0.0044 9.5E-08 52.3 7.1 92 25-119 81-203 (492)
183 PF11339 DUF3141: Protein of u 96.8 0.0078 1.7E-07 52.2 8.5 80 42-121 91-178 (581)
184 PF07082 DUF1350: Protein of u 96.8 0.031 6.7E-07 44.2 11.1 90 26-115 19-122 (250)
185 PF04301 DUF452: Protein of un 96.8 0.023 5E-07 44.2 10.0 83 24-122 11-94 (213)
186 cd00519 Lipase_3 Lipase (class 96.6 0.0042 9.2E-08 48.7 5.4 22 82-103 127-148 (229)
187 PF03583 LIP: Secretory lipase 96.6 0.014 3E-07 47.7 8.5 75 43-117 18-112 (290)
188 PF11288 DUF3089: Protein of u 96.4 0.014 3E-07 45.1 6.8 73 45-119 40-137 (207)
189 PLN02162 triacylglycerol lipas 96.4 0.011 2.3E-07 51.0 6.4 47 69-117 266-320 (475)
190 PLN00413 triacylglycerol lipas 96.3 0.012 2.6E-07 50.7 6.5 50 67-118 270-327 (479)
191 PF00450 Peptidase_S10: Serine 96.1 0.11 2.4E-06 44.2 11.6 112 7-119 14-182 (415)
192 PF06259 Abhydrolase_8: Alpha/ 96.1 0.021 4.5E-07 43.2 6.0 56 65-120 88-146 (177)
193 KOG2551 Phospholipase/carboxyh 96.0 0.052 1.1E-06 42.2 8.2 74 24-102 5-123 (230)
194 PLN02571 triacylglycerol lipas 95.9 0.015 3.2E-07 49.5 5.0 38 66-103 209-246 (413)
195 PLN02454 triacylglycerol lipas 95.9 0.024 5.2E-07 48.3 6.2 34 70-103 215-248 (414)
196 COG4947 Uncharacterized protei 95.9 0.025 5.4E-07 42.3 5.5 105 14-120 15-138 (227)
197 PF05277 DUF726: Protein of un 95.9 0.0052 1.1E-07 51.2 2.2 39 82-120 219-262 (345)
198 PLN02408 phospholipase A1 95.7 0.021 4.5E-07 48.0 5.0 37 67-103 184-220 (365)
199 PLN02324 triacylglycerol lipas 95.6 0.033 7.2E-07 47.4 6.0 37 67-103 199-235 (415)
200 PLN02310 triacylglycerol lipas 95.5 0.044 9.4E-07 46.6 6.5 51 67-117 191-247 (405)
201 PF01083 Cutinase: Cutinase; 95.4 0.035 7.7E-07 42.0 5.2 69 52-120 40-124 (179)
202 KOG4372 Predicted alpha/beta h 95.4 0.017 3.7E-07 48.7 3.5 74 25-101 81-168 (405)
203 PLN02934 triacylglycerol lipas 95.4 0.049 1.1E-06 47.5 6.3 35 66-102 306-340 (515)
204 PF04083 Abhydro_lipase: Parti 95.3 0.044 9.5E-07 34.0 4.3 36 5-40 13-59 (63)
205 KOG1516 Carboxylesterase and r 95.2 0.06 1.3E-06 47.7 6.6 96 24-119 112-233 (545)
206 PLN02802 triacylglycerol lipas 95.0 0.043 9.3E-07 47.8 4.9 37 67-103 314-350 (509)
207 KOG1202 Animal-type fatty acid 94.9 0.13 2.9E-06 49.1 8.0 96 23-119 2122-2220(2376)
208 PLN03037 lipase class 3 family 94.7 0.052 1.1E-06 47.4 4.8 36 67-102 300-337 (525)
209 COG1770 PtrB Protease II [Amin 94.4 0.16 3.4E-06 45.6 7.0 94 22-115 446-559 (682)
210 PLN02753 triacylglycerol lipas 94.1 0.094 2E-06 45.9 5.0 36 67-102 293-331 (531)
211 PLN02761 lipase class 3 family 94.1 0.096 2.1E-06 45.8 5.0 36 67-102 274-313 (527)
212 PF05705 DUF829: Eukaryotic pr 93.9 0.83 1.8E-05 35.9 9.7 95 26-120 1-114 (240)
213 PLN02719 triacylglycerol lipas 93.8 0.1 2.3E-06 45.5 4.8 36 67-102 279-317 (518)
214 KOG4569 Predicted lipase [Lipi 93.7 0.11 2.5E-06 43.3 4.7 51 65-117 155-211 (336)
215 KOG2237 Predicted serine prote 93.4 0.063 1.4E-06 47.8 2.7 92 23-114 469-580 (712)
216 PF05576 Peptidase_S37: PS-10 93.1 0.24 5.2E-06 42.1 5.6 94 23-118 62-169 (448)
217 KOG2029 Uncharacterized conser 93.0 0.41 8.8E-06 42.6 7.0 51 70-120 512-574 (697)
218 PF08237 PE-PPE: PE-PPE domain 92.7 0.54 1.2E-05 37.0 6.9 56 63-118 28-89 (225)
219 PLN02847 triacylglycerol lipas 92.6 0.21 4.5E-06 44.5 4.8 22 82-103 250-271 (633)
220 KOG3253 Predicted alpha/beta h 92.2 0.28 6.1E-06 43.7 5.0 93 24-119 176-287 (784)
221 COG1505 Serine proteases of th 92.0 0.17 3.6E-06 44.9 3.4 107 9-115 400-532 (648)
222 PLN03016 sinapoylglucose-malat 88.3 5.4 0.00012 34.6 9.6 111 7-117 40-209 (433)
223 PLN02209 serine carboxypeptida 87.9 6.5 0.00014 34.1 9.9 110 8-117 43-211 (437)
224 COG2939 Carboxypeptidase C (ca 85.4 5.3 0.00011 35.0 7.9 93 24-116 101-234 (498)
225 COG4553 DepA Poly-beta-hydroxy 85.0 20 0.00044 29.5 12.7 93 24-120 103-211 (415)
226 COG5153 CVT17 Putative lipase 84.4 2.2 4.8E-05 34.8 4.9 24 82-105 275-298 (425)
227 KOG4540 Putative lipase essent 84.4 2.2 4.8E-05 34.8 4.9 24 82-105 275-298 (425)
228 KOG1282 Serine carboxypeptidas 84.3 4.9 0.00011 35.0 7.3 111 7-118 47-213 (454)
229 PF07519 Tannase: Tannase and 84.0 2.1 4.6E-05 37.6 5.0 46 73-118 104-150 (474)
230 KOG2385 Uncharacterized conser 81.9 1.3 2.8E-05 38.8 2.8 40 82-121 446-490 (633)
231 PRK12467 peptide synthase; Pro 80.7 6.9 0.00015 43.3 8.2 89 25-115 3693-3792(3956)
232 COG1448 TyrB Aspartate/tyrosin 80.3 11 0.00024 31.9 7.7 83 25-116 172-263 (396)
233 PF09949 DUF2183: Uncharacteri 80.2 16 0.00034 24.8 7.8 75 37-113 10-97 (100)
234 KOG4388 Hormone-sensitive lipa 79.9 3 6.5E-05 37.4 4.4 94 25-118 397-508 (880)
235 cd01714 ETF_beta The electron 77.3 13 0.00028 28.6 6.9 67 45-114 70-145 (202)
236 COG3673 Uncharacterized conser 76.3 39 0.00084 28.3 9.4 79 24-103 31-142 (423)
237 PF06309 Torsin: Torsin; Inte 74.8 16 0.00034 26.0 6.2 55 23-77 51-115 (127)
238 PLN02213 sinapoylglucose-malat 74.1 7.9 0.00017 32.0 5.3 50 68-117 31-95 (319)
239 COG4822 CbiK Cobalamin biosynt 73.6 24 0.00052 27.6 7.2 58 25-87 139-198 (265)
240 TIGR03712 acc_sec_asp2 accesso 73.4 4.2 9.1E-05 35.6 3.5 84 17-104 280-378 (511)
241 KOG2872 Uroporphyrinogen decar 73.4 13 0.00028 30.4 6.0 30 25-61 253-282 (359)
242 KOG2521 Uncharacterized conser 73.0 24 0.00053 29.7 7.8 96 24-119 38-153 (350)
243 COG3340 PepE Peptidase E [Amin 70.6 21 0.00045 27.9 6.3 41 22-62 30-73 (224)
244 PRK05282 (alpha)-aspartyl dipe 70.5 25 0.00054 27.8 7.0 74 23-99 30-128 (233)
245 PF03283 PAE: Pectinacetyleste 68.8 55 0.0012 27.7 9.1 38 82-119 155-196 (361)
246 PF00698 Acyl_transf_1: Acyl t 67.1 4.7 0.0001 33.2 2.5 29 72-102 75-103 (318)
247 smart00827 PKS_AT Acyl transfe 66.8 8.2 0.00018 31.2 3.8 28 73-102 74-101 (298)
248 KOG0781 Signal recognition par 64.9 35 0.00076 30.1 7.2 85 28-114 442-538 (587)
249 PF10081 Abhydrolase_9: Alpha/ 63.9 50 0.0011 27.0 7.6 54 67-120 92-149 (289)
250 PF00448 SRP54: SRP54-type pro 63.1 58 0.0013 24.9 7.7 72 41-114 73-148 (196)
251 TIGR03131 malonate_mdcH malona 62.9 11 0.00024 30.5 3.9 29 72-102 67-95 (295)
252 COG2830 Uncharacterized protei 62.1 18 0.00039 27.1 4.3 79 25-119 12-91 (214)
253 PRK14974 cell division protein 61.5 70 0.0015 26.8 8.4 113 48-173 219-335 (336)
254 PF06792 UPF0261: Uncharacteri 59.9 1.1E+02 0.0025 26.3 9.6 84 30-113 6-125 (403)
255 KOG1551 Uncharacterized conser 59.8 7.3 0.00016 31.6 2.2 34 82-115 194-227 (371)
256 PF08484 Methyltransf_14: C-me 58.3 20 0.00043 26.6 4.2 50 66-115 52-101 (160)
257 TIGR01626 ytfJ_HI0045 conserve 56.5 86 0.0019 23.8 7.8 91 8-100 39-141 (184)
258 COG0279 GmhA Phosphoheptose is 55.1 26 0.00057 26.2 4.2 65 28-95 44-121 (176)
259 cd07198 Patatin Patatin-like p 55.1 24 0.00053 26.0 4.3 33 71-105 16-48 (172)
260 cd07225 Pat_PNPLA6_PNPLA7 Pata 53.4 24 0.00052 29.1 4.3 62 38-104 2-64 (306)
261 PF03610 EIIA-man: PTS system 53.4 70 0.0015 21.9 7.5 74 26-102 2-77 (116)
262 TIGR01425 SRP54_euk signal rec 53.1 1.3E+02 0.0028 26.2 8.8 68 44-113 175-246 (429)
263 cd07207 Pat_ExoU_VipD_like Exo 52.2 27 0.00059 26.2 4.2 32 72-105 18-49 (194)
264 TIGR02764 spore_ybaN_pdaB poly 51.9 17 0.00036 27.4 3.0 33 26-58 153-188 (191)
265 PF00731 AIRC: AIR carboxylase 51.4 95 0.0021 22.8 6.8 84 25-111 1-84 (150)
266 COG2230 Cfa Cyclopropane fatty 51.1 44 0.00095 27.3 5.3 60 52-112 41-102 (283)
267 COG1073 Hydrolases of the alph 50.7 56 0.0012 25.5 6.1 78 24-105 49-154 (299)
268 TIGR02873 spore_ylxY probable 50.2 25 0.00054 28.4 3.9 33 26-58 232-264 (268)
269 PRK10279 hypothetical protein; 50.0 27 0.00057 28.8 4.0 33 71-105 23-55 (300)
270 PF03681 UPF0150: Uncharacteri 49.9 33 0.00072 19.4 3.4 28 50-77 12-44 (48)
271 COG0541 Ffh Signal recognition 49.2 99 0.0021 27.0 7.3 71 42-114 173-247 (451)
272 COG0529 CysC Adenylylsulfate k 48.1 58 0.0012 24.9 5.2 38 22-59 20-59 (197)
273 cd07210 Pat_hypo_W_succinogene 48.0 37 0.00081 26.4 4.5 32 72-105 19-50 (221)
274 COG1752 RssA Predicted esteras 47.4 31 0.00067 28.3 4.1 33 71-105 29-61 (306)
275 TIGR02884 spore_pdaA delta-lac 47.2 29 0.00063 27.1 3.8 34 25-58 187-221 (224)
276 cd07227 Pat_Fungal_NTE1 Fungal 46.7 36 0.00077 27.6 4.3 33 70-104 27-59 (269)
277 cd05014 SIS_Kpsf KpsF-like pro 46.5 45 0.00098 22.9 4.4 31 28-58 3-33 (128)
278 PRK05579 bifunctional phosphop 46.1 1.5E+02 0.0032 25.5 8.1 66 24-90 116-196 (399)
279 PF09994 DUF2235: Uncharacteri 45.0 39 0.00085 27.3 4.3 30 74-104 84-113 (277)
280 TIGR02816 pfaB_fam PfaB family 44.4 30 0.00064 31.0 3.7 27 76-104 260-286 (538)
281 PF01583 APS_kinase: Adenylyls 43.9 56 0.0012 24.1 4.6 35 24-58 1-37 (156)
282 PF05673 DUF815: Protein of un 43.7 1.1E+02 0.0025 24.4 6.5 61 26-92 53-115 (249)
283 cd07228 Pat_NTE_like_bacteria 43.3 50 0.0011 24.4 4.4 31 73-105 20-50 (175)
284 cd07209 Pat_hypo_Ecoli_Z1214_l 43.0 44 0.00095 25.8 4.2 33 71-105 16-48 (215)
285 PF03853 YjeF_N: YjeF-related 42.7 1.1E+02 0.0024 22.6 6.1 56 23-79 24-81 (169)
286 TIGR03709 PPK2_rel_1 polyphosp 42.6 88 0.0019 25.3 5.9 72 23-97 54-128 (264)
287 PF14253 AbiH: Bacteriophage a 41.1 29 0.00063 27.6 3.0 23 72-95 225-247 (270)
288 TIGR00959 ffh signal recogniti 41.0 2.4E+02 0.0053 24.5 10.6 69 44-114 175-247 (428)
289 TIGR00128 fabD malonyl CoA-acy 40.9 40 0.00086 27.0 3.8 21 82-102 82-102 (290)
290 COG3946 VirJ Type IV secretory 40.8 1E+02 0.0022 26.7 6.1 89 25-115 49-154 (456)
291 PF12780 AAA_8: P-loop contain 40.5 1.1E+02 0.0023 24.7 6.1 60 30-91 36-98 (268)
292 TIGR03127 RuMP_HxlB 6-phospho 40.2 93 0.002 23.0 5.5 32 27-58 32-63 (179)
293 cd07205 Pat_PNPLA6_PNPLA7_NTE1 39.9 62 0.0013 23.8 4.4 30 73-104 20-49 (175)
294 PF09314 DUF1972: Domain of un 39.3 1.7E+02 0.0037 22.2 8.5 54 63-116 68-127 (185)
295 cd07230 Pat_TGL4-5_like Triacy 38.6 23 0.00049 30.7 2.1 36 71-108 91-126 (421)
296 KOG1532 GTPase XAB1, interacts 37.3 1.8E+02 0.004 24.0 6.8 83 24-106 18-149 (366)
297 PF02590 SPOUT_MTase: Predicte 36.9 57 0.0012 24.0 3.7 41 51-93 67-109 (155)
298 PHA02114 hypothetical protein 36.3 57 0.0012 22.2 3.2 33 25-57 83-115 (127)
299 PF03358 FMN_red: NADPH-depend 35.6 1E+02 0.0022 21.9 5.0 62 26-89 2-77 (152)
300 PF03575 Peptidase_S51: Peptid 35.4 1.5E+02 0.0032 21.4 5.8 53 42-96 4-81 (154)
301 PRK10867 signal recognition pa 35.2 3.1E+02 0.0066 24.0 9.7 67 45-113 177-247 (433)
302 cd07232 Pat_PLPL Patain-like p 34.8 28 0.00061 30.0 2.0 40 70-111 84-123 (407)
303 KOG0780 Signal recognition par 34.4 2.4E+02 0.0052 24.5 7.3 42 45-88 177-220 (483)
304 COG0331 FabD (acyl-carrier-pro 34.4 47 0.001 27.5 3.2 21 82-102 84-104 (310)
305 TIGR03707 PPK2_P_aer polyphosp 34.3 1.6E+02 0.0034 23.3 6.0 71 24-97 30-103 (230)
306 COG3887 Predicted signaling pr 34.1 97 0.0021 28.2 5.2 49 69-118 324-378 (655)
307 COG3933 Transcriptional antite 33.9 2.7E+02 0.0059 24.5 7.6 71 25-99 110-181 (470)
308 cd07231 Pat_SDP1-like Sugar-De 33.8 30 0.00065 28.8 2.0 33 71-105 86-118 (323)
309 cd07208 Pat_hypo_Ecoli_yjju_li 33.6 78 0.0017 25.2 4.4 33 72-106 17-50 (266)
310 PRK00103 rRNA large subunit me 33.4 1.1E+02 0.0023 22.7 4.7 42 51-94 67-110 (157)
311 cd07229 Pat_TGL3_like Triacylg 33.3 33 0.00072 29.4 2.2 38 71-110 101-138 (391)
312 PF04198 Sugar-bind: Putative 33.2 2.5E+02 0.0054 22.4 7.8 76 67-148 38-115 (255)
313 PF05724 TPMT: Thiopurine S-me 33.1 58 0.0013 25.4 3.4 32 24-60 37-68 (218)
314 PRK15482 transcriptional regul 33.1 76 0.0016 25.6 4.3 31 27-57 137-167 (285)
315 KOG4389 Acetylcholinesterase/B 33.1 56 0.0012 29.0 3.5 53 66-118 201-255 (601)
316 COG1576 Uncharacterized conser 32.9 1.1E+02 0.0025 22.5 4.6 45 51-98 67-113 (155)
317 cd05312 NAD_bind_1_malic_enz N 32.8 63 0.0014 26.3 3.6 71 26-100 26-123 (279)
318 COG2185 Sbm Methylmalonyl-CoA 32.3 2E+02 0.0043 21.0 7.9 68 22-96 10-78 (143)
319 cd07224 Pat_like Patatin-like 31.8 97 0.0021 24.3 4.5 35 71-105 17-51 (233)
320 PF10142 PhoPQ_related: PhoPQ- 31.7 1.7E+02 0.0037 24.9 6.2 37 81-118 170-206 (367)
321 PRK06731 flhF flagellar biosyn 31.7 2.8E+02 0.0061 22.4 9.3 69 44-114 146-219 (270)
322 KOG1202 Animal-type fatty acid 31.6 94 0.002 31.2 4.9 26 70-97 571-596 (2376)
323 cd05005 SIS_PHI Hexulose-6-pho 31.6 1.7E+02 0.0037 21.6 5.7 32 27-58 35-66 (179)
324 TIGR00521 coaBC_dfp phosphopan 30.9 3.4E+02 0.0075 23.3 8.5 86 25-117 113-234 (390)
325 TIGR02069 cyanophycinase cyano 30.8 2.8E+02 0.006 22.1 8.5 38 23-60 27-66 (250)
326 COG1856 Uncharacterized homolo 30.5 2.8E+02 0.0061 22.1 7.1 67 45-114 104-186 (275)
327 PRK15180 Vi polysaccharide bio 30.0 2.3E+02 0.005 25.4 6.7 65 25-91 97-197 (831)
328 PF00004 AAA: ATPase family as 29.8 1.4E+02 0.003 20.2 4.7 50 28-79 1-54 (132)
329 cd00006 PTS_IIA_man PTS_IIA, P 29.6 1.9E+02 0.0042 19.9 7.8 71 26-99 3-74 (122)
330 cd04795 SIS SIS domain. SIS (S 29.5 78 0.0017 19.8 3.1 30 29-58 2-32 (87)
331 PRK13256 thiopurine S-methyltr 29.4 67 0.0014 25.3 3.2 31 26-61 45-75 (226)
332 KOG1283 Serine carboxypeptidas 29.0 50 0.0011 27.7 2.4 79 24-104 31-143 (414)
333 PF07521 RMMBL: RNA-metabolisi 29.0 1.1E+02 0.0024 16.9 4.3 32 52-88 7-38 (43)
334 TIGR02821 fghA_ester_D S-formy 28.9 1.8E+02 0.0038 23.2 5.7 56 24-79 211-272 (275)
335 PLN03050 pyridoxine (pyridoxam 28.9 1.3E+02 0.0028 23.9 4.8 34 25-58 61-94 (246)
336 PF13207 AAA_17: AAA domain; P 28.8 64 0.0014 21.8 2.8 31 27-59 1-32 (121)
337 PRK14582 pgaB outer membrane N 28.5 4.9E+02 0.011 24.3 9.5 81 23-116 47-141 (671)
338 PF00650 CRAL_TRIO: CRAL/TRIO 28.5 1.2E+02 0.0026 21.5 4.3 49 52-118 62-110 (159)
339 COG0159 TrpA Tryptophan syntha 28.2 2.5E+02 0.0053 22.8 6.2 84 25-115 96-180 (265)
340 COG1737 RpiR Transcriptional r 27.8 90 0.0019 25.2 3.8 58 28-96 133-190 (281)
341 PF01656 CbiA: CobQ/CobB/MinD/ 27.7 1E+02 0.0022 22.7 3.9 32 28-59 2-35 (195)
342 PF08433 KTI12: Chromatin asso 27.6 1E+02 0.0022 24.9 4.1 33 26-58 2-36 (270)
343 PF06626 DUF1152: Protein of u 27.5 2.2E+02 0.0048 23.5 5.9 42 44-88 83-124 (297)
344 PRK14729 miaA tRNA delta(2)-is 27.5 2E+02 0.0043 23.8 5.7 65 25-91 4-101 (300)
345 PF03205 MobB: Molybdopterin g 27.5 1.1E+02 0.0023 21.9 3.8 32 26-57 1-34 (140)
346 KOG2730 Methylase [General fun 27.3 1E+02 0.0022 24.5 3.8 61 39-105 54-117 (263)
347 PF04244 DPRP: Deoxyribodipyri 27.1 2.5E+02 0.0054 22.0 6.0 48 39-88 50-98 (224)
348 COG0426 FpaA Uncharacterized f 27.0 4.1E+02 0.0089 22.9 7.8 74 26-108 250-332 (388)
349 cd03146 GAT1_Peptidase_E Type 26.3 3E+02 0.0065 21.1 8.9 75 23-99 30-129 (212)
350 cd07206 Pat_TGL3-4-5_SDP1 Tria 26.2 1E+02 0.0022 25.4 3.8 24 82-105 96-119 (298)
351 PRK02399 hypothetical protein; 25.8 4.4E+02 0.0096 22.9 10.9 86 28-113 6-127 (406)
352 PLN02748 tRNA dimethylallyltra 25.2 3E+02 0.0065 24.3 6.7 66 24-91 21-120 (468)
353 cd07211 Pat_PNPLA8 Patatin-lik 25.0 2E+02 0.0044 23.4 5.5 16 87-102 45-60 (308)
354 PRK13398 3-deoxy-7-phosphohept 25.0 3.7E+02 0.008 21.7 8.9 68 23-93 133-208 (266)
355 cd07218 Pat_iPLA2 Calcium-inde 24.8 1.5E+02 0.0032 23.5 4.5 19 87-105 34-52 (245)
356 cd07212 Pat_PNPLA9 Patatin-lik 24.7 68 0.0015 26.5 2.6 19 86-104 35-53 (312)
357 COG2205 KdpD Osmosensitive K+ 24.6 6.4E+02 0.014 24.3 9.4 72 24-98 249-328 (890)
358 PRK09444 pntB pyridine nucleot 24.6 2.8E+02 0.006 24.4 6.2 39 24-62 306-354 (462)
359 PRK12724 flagellar biosynthesi 24.5 4.8E+02 0.01 22.8 8.6 70 45-114 293-367 (432)
360 cd04951 GT1_WbdM_like This fam 24.4 3.7E+02 0.008 21.5 9.1 35 26-60 2-38 (360)
361 PF11713 Peptidase_C80: Peptid 24.2 48 0.001 24.5 1.5 35 61-95 76-116 (157)
362 cd07204 Pat_PNPLA_like Patatin 24.0 1.5E+02 0.0032 23.4 4.3 20 86-105 34-53 (243)
363 cd06143 PAN2_exo DEDDh 3'-5' e 23.6 2E+02 0.0043 21.7 4.7 14 83-96 101-114 (174)
364 KOG0094 GTPase Rab6/YPT6/Ryh1, 23.6 3.6E+02 0.0078 21.0 7.7 54 37-90 81-136 (221)
365 PF04084 ORC2: Origin recognit 23.3 2.2E+02 0.0047 23.8 5.3 15 82-96 136-150 (326)
366 TIGR00246 tRNA_RlmH_YbeA rRNA 23.2 1.3E+02 0.0028 22.1 3.6 40 52-94 66-107 (153)
367 COG0299 PurN Folate-dependent 23.2 2.3E+02 0.0049 21.9 4.9 69 45-120 44-113 (200)
368 PRK02842 light-independent pro 23.0 2.6E+02 0.0056 24.2 5.9 71 24-94 97-178 (427)
369 PRK11557 putative DNA-binding 23.0 1.4E+02 0.003 23.8 4.1 59 27-96 130-188 (278)
370 COG4088 Predicted nucleotide k 23.0 96 0.0021 24.5 2.9 34 26-59 2-37 (261)
371 PRK11889 flhF flagellar biosyn 22.9 5.2E+02 0.011 22.6 8.4 76 37-114 305-385 (436)
372 PRK06193 hypothetical protein; 22.9 1.3E+02 0.0028 23.4 3.6 29 64-92 137-165 (206)
373 cd01983 Fer4_NifH The Fer4_Nif 22.5 1.9E+02 0.0042 17.9 4.1 30 29-58 3-34 (99)
374 KOG1752 Glutaredoxin and relat 22.4 2.6E+02 0.0057 19.0 4.8 75 24-104 14-90 (104)
375 COG2240 PdxK Pyridoxal/pyridox 22.4 4.4E+02 0.0095 21.6 8.6 87 30-120 11-115 (281)
376 COG1598 Predicted nuclease of 22.3 1.4E+02 0.003 18.7 3.2 28 49-76 13-45 (73)
377 cd01819 Patatin_and_cPLA2 Pata 22.2 1.7E+02 0.0038 21.1 4.2 19 83-101 28-46 (155)
378 COG5016 Pyruvate/oxaloacetate 22.2 5E+02 0.011 22.7 7.1 65 35-102 153-219 (472)
379 PRK14581 hmsF outer membrane N 22.2 3.9E+02 0.0084 24.9 7.0 36 23-58 47-92 (672)
380 TIGR01361 DAHP_synth_Bsub phos 21.5 4.3E+02 0.0093 21.2 7.4 68 23-93 131-206 (260)
381 PLN02752 [acyl-carrier protein 21.3 78 0.0017 26.3 2.4 18 85-102 126-143 (343)
382 PRK00091 miaA tRNA delta(2)-is 21.1 4E+02 0.0088 22.0 6.4 34 24-59 3-37 (307)
383 COG0552 FtsY Signal recognitio 21.0 5.1E+02 0.011 21.9 9.3 74 41-114 211-292 (340)
384 TIGR02683 upstrm_HI1419 probab 21.0 2E+02 0.0044 18.9 3.9 28 8-36 51-79 (95)
385 cd00401 AdoHcyase S-adenosyl-L 21.0 5.6E+02 0.012 22.2 8.8 80 25-112 61-140 (413)
386 PLN02591 tryptophan synthase 20.8 4.4E+02 0.0096 21.0 7.5 78 25-108 80-158 (250)
387 COG1506 DAP2 Dipeptidyl aminop 20.8 3.5E+02 0.0076 24.7 6.6 39 24-62 551-592 (620)
388 cd01535 4RHOD_Repeat_4 Member 20.7 3.3E+02 0.0071 19.5 6.3 64 51-117 9-83 (145)
389 TIGR00632 vsr DNA mismatch end 20.7 2.2E+02 0.0047 20.0 4.1 13 45-57 101-113 (117)
390 PF01012 ETF: Electron transfe 20.7 3E+02 0.0065 19.9 5.2 57 44-103 51-112 (164)
391 cd07220 Pat_PNPLA2 Patatin-lik 20.6 1.8E+02 0.0039 23.2 4.2 22 84-105 37-58 (249)
392 TIGR03708 poly_P_AMP_trns poly 20.5 3.8E+02 0.0083 23.9 6.4 72 23-97 38-112 (493)
393 PF13200 DUF4015: Putative gly 20.3 1.7E+02 0.0037 24.3 4.1 60 28-89 2-79 (316)
394 PF00091 Tubulin: Tubulin/FtsZ 20.2 2.9E+02 0.0063 21.2 5.2 15 82-96 123-137 (216)
395 COG2876 AroA 3-deoxy-D-arabino 20.0 3.3E+02 0.0071 22.2 5.4 70 24-95 152-228 (286)
No 1
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-29 Score=202.05 Aligned_cols=188 Identities=49% Similarity=0.972 Sum_probs=165.1
Q ss_pred CCCceEEEEECCEEEEEEeeC--CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC------------Chhhh
Q 043205 2 EGIQHRIVKVNGINMHVAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY------------TCFHG 67 (207)
Q Consensus 2 ~~~~~~~v~~~g~~i~~~~~g--~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~~~~ 67 (207)
+.+.+.+++.+|+++||...| .+|.++++||++.++++|+.+...|+..||+|+++|+||| |...+
T Consensus 20 ~~~~hk~~~~~gI~~h~~e~g~~~gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l 99 (322)
T KOG4178|consen 20 SAISHKFVTYKGIRLHYVEGGPGDGPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDEL 99 (322)
T ss_pred hhcceeeEEEccEEEEEEeecCCCCCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHH
Confidence 457899999999999999887 4799999999999999999999999999999999999998 78889
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCCCCCCCcccccchHHHHHHHhCChhhHh
Q 043205 68 IADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDHFDPNTSVSNNKRIEALRAYYGDDYYMC 147 (207)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (207)
+.|+..++++++ .++++++||+||+++++++|..+|++|+++|+++.++. +| ..+........+...+|..
T Consensus 100 ~~di~~lld~Lg--~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~--~p-----~~~~~~~~~~~f~~~~y~~ 170 (322)
T KOG4178|consen 100 VGDIVALLDHLG--LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP--NP-----KLKPLDSSKAIFGKSYYIC 170 (322)
T ss_pred HHHHHHHHHHhc--cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC--Cc-----ccchhhhhccccCccceeE
Confidence 999999999999 89999999999999999999999999999999998887 33 4566667777889999999
Q ss_pred hhcCCcHHHHHHhhcCHHHHHHHHhhccCCCcccCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 043205 148 RFQKPGEIEAEFAQIGIETIIKEFFTFWTPGLIILPKGKRFGHPPDVPIALPSWFSEEDV 207 (207)
Q Consensus 148 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (207)
.+|.|..+++.+++.+.+.+...++....+....... . ..+.|.|+|+||+
T Consensus 171 ~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~w~t~edi 221 (322)
T KOG4178|consen 171 LFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPK-Q--------PNENPLWLTEEDI 221 (322)
T ss_pred eccccCcchhhhccchhHHhHHhhhccccCCccccCC-C--------CCCccchhhHHHH
Confidence 9999999999999999999999999888877654443 1 1112778888763
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.88 E-value=7.3e-22 Score=160.60 Aligned_cols=113 Identities=24% Similarity=0.394 Sum_probs=102.9
Q ss_pred CCceEEEEECCEEEEEEeeC-CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------------Ch
Q 043205 3 GIQHRIVKVNGINMHVAEKG-QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------------TC 64 (207)
Q Consensus 3 ~~~~~~v~~~g~~i~~~~~g-~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------------~~ 64 (207)
+.++.+++++|.+++|...| ++|+|||+||+++++..|+.+.+.|++. |+|+++|+||+ +.
T Consensus 7 ~~~~~~~~~~~~~i~y~~~G~~~~~vlllHG~~~~~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~ 85 (294)
T PLN02824 7 QVETRTWRWKGYNIRYQRAGTSGPALVLVHGFGGNADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPNSFYTF 85 (294)
T ss_pred CCCCceEEEcCeEEEEEEcCCCCCeEEEECCCCCChhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccccccccCCH
Confidence 45678899999999999988 4899999999999999999999999986 89999999998 12
Q ss_pred hhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 65 FHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
+++++++.+++++++ .++++++||||||.+++.+|.++|++|+++|+++++.
T Consensus 86 ~~~a~~l~~~l~~l~--~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 86 ETWGEQLNDFCSDVV--GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred HHHHHHHHHHHHHhc--CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 567889999999998 7899999999999999999999999999999999754
No 3
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.88 E-value=1.3e-21 Score=159.26 Aligned_cols=112 Identities=37% Similarity=0.564 Sum_probs=103.7
Q ss_pred CceEEEEECCEEEEEEeeCCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHH
Q 043205 4 IQHRIVKVNGINMHVAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVG 73 (207)
Q Consensus 4 ~~~~~v~~~g~~i~~~~~g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~ 73 (207)
+...+++++|.+++|...|++|+|||+||++++...|+.+.+.|.+. ++|+++|+||+ +...+++|+..
T Consensus 7 ~~~~~~~~~g~~i~y~~~G~g~~vvllHG~~~~~~~w~~~~~~L~~~-~~via~D~~G~G~S~~~~~~~~~~~~a~dl~~ 85 (295)
T PRK03592 7 GEMRRVEVLGSRMAYIETGEGDPIVFLHGNPTSSYLWRNIIPHLAGL-GRCLAPDLIGMGASDKPDIDYTFADHARYLDA 85 (295)
T ss_pred CcceEEEECCEEEEEEEeCCCCEEEEECCCCCCHHHHHHHHHHHhhC-CEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999987 69999999998 56778899999
Q ss_pred HHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 74 LIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 74 ~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
++++++ .++++++|||+||.+++.++.++|++|+++|++++..
T Consensus 86 ll~~l~--~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~ 128 (295)
T PRK03592 86 WFDALG--LDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIV 128 (295)
T ss_pred HHHHhC--CCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCC
Confidence 999998 7899999999999999999999999999999999743
No 4
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.88 E-value=1.9e-21 Score=158.92 Aligned_cols=113 Identities=31% Similarity=0.544 Sum_probs=101.7
Q ss_pred CceEEEEECC-----EEEEEEeeCC--CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC------------Ch
Q 043205 4 IQHRIVKVNG-----INMHVAEKGQ--GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY------------TC 64 (207)
Q Consensus 4 ~~~~~v~~~g-----~~i~~~~~g~--~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~ 64 (207)
+..+++++++ .+++|...|+ +|+|||+||++++...|..+++.|.+.||+|+++|+||| +.
T Consensus 19 ~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~ 98 (302)
T PRK00870 19 FAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTY 98 (302)
T ss_pred CCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCH
Confidence 3566888988 8999998874 799999999999999999999999877899999999998 34
Q ss_pred hhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 65 FHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
+++++++.+++++++ .++++++|||+||.++..+|.++|++|+++|++++..
T Consensus 99 ~~~a~~l~~~l~~l~--~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 150 (302)
T PRK00870 99 ARHVEWMRSWFEQLD--LTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGL 150 (302)
T ss_pred HHHHHHHHHHHHHcC--CCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCC
Confidence 677899999999998 7899999999999999999999999999999998643
No 5
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.86 E-value=4.8e-21 Score=154.54 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=100.9
Q ss_pred CceEEEEECCEEEEEEee--CCC-cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHH
Q 043205 4 IQHRIVKVNGINMHVAEK--GQG-PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIAD 70 (207)
Q Consensus 4 ~~~~~v~~~g~~i~~~~~--g~~-~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~ 70 (207)
+..++++++|.+++|... +++ ++|||+||++++...|..+++.|.+ +|+|+++|+||| +.+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~ 80 (276)
T TIGR02240 2 FIFRTIDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLELVFPFIEALDP-DLEVIAFDVPGVGGSSTPRHPYRFPGLAKL 80 (276)
T ss_pred eeEEEeccCCcEEEEEEecCCCCCCcEEEEeCCCcchHHHHHHHHHhcc-CceEEEECCCCCCCCCCCCCcCcHHHHHHH
Confidence 346778899999999764 334 7999999999999999999999987 599999999999 46788999
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+.+++++++ .++++|+||||||.+++.+|.++|++|+++|+++++..
T Consensus 81 ~~~~i~~l~--~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~ 127 (276)
T TIGR02240 81 AARMLDYLD--YGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAG 127 (276)
T ss_pred HHHHHHHhC--cCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCc
Confidence 999999998 78999999999999999999999999999999997754
No 6
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.85 E-value=1.4e-20 Score=152.85 Aligned_cols=112 Identities=28% Similarity=0.493 Sum_probs=101.8
Q ss_pred CceEEEEECCEEEEEEeeCCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHH
Q 043205 4 IQHRIVKVNGINMHVAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLV 72 (207)
Q Consensus 4 ~~~~~v~~~g~~i~~~~~g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~ 72 (207)
+...+++++|.+++|...|++|+|||+||++.+...|+.+.+.|.+ +|+|+++|+||+ +.+.+++++.
T Consensus 14 ~~~~~~~~~~~~i~y~~~G~~~~iv~lHG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~ 92 (286)
T PRK03204 14 FESRWFDSSRGRIHYIDEGTGPPILLCHGNPTWSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQIDEHARVIG 92 (286)
T ss_pred ccceEEEcCCcEEEEEECCCCCEEEEECCCCccHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccCHHHHHHHHH
Confidence 5678899999999999999899999999999999999999999987 599999999998 3466788889
Q ss_pred HHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 73 GLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 73 ~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.++++++ .++++++||||||.+++.++..+|++|+++|+++++.
T Consensus 93 ~~~~~~~--~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 93 EFVDHLG--LDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred HHHHHhC--CCCEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 9999988 7899999999999999999999999999999988654
No 7
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.83 E-value=1.5e-19 Score=151.44 Aligned_cols=109 Identities=25% Similarity=0.372 Sum_probs=96.9
Q ss_pred EEEEECCE-EEEEEeeCCC------cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhH
Q 043205 7 RIVKVNGI-NMHVAEKGQG------PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGI 68 (207)
Q Consensus 7 ~~v~~~g~-~i~~~~~g~~------~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~ 68 (207)
+++..+|. +++|...|++ |+|||+||++++...|..+++.|.+ +|+|+++|+||| +.+.++
T Consensus 64 ~~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~~~~~a 142 (360)
T PLN02679 64 KKWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYTMETWA 142 (360)
T ss_pred ceEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCccccHHHHH
Confidence 45677777 9999988865 9999999999999999999999987 699999999999 346788
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH-hCCcccceEEEeccCC
Q 043205 69 ADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL-FRPDRVKALVNMSVTF 118 (207)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~-~~p~~v~~lv~~~~~~ 118 (207)
+++.+++++++ .++++++||||||.+++.++. .+|++|+++|+++++.
T Consensus 143 ~~l~~~l~~l~--~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~ 191 (360)
T PLN02679 143 ELILDFLEEVV--QKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAG 191 (360)
T ss_pred HHHHHHHHHhc--CCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCcc
Confidence 89999999998 789999999999999998887 4799999999999764
No 8
>PLN02578 hydrolase
Probab=99.83 E-value=2.4e-19 Score=149.78 Aligned_cols=109 Identities=25% Similarity=0.415 Sum_probs=98.8
Q ss_pred EEEEECCEEEEEEeeCCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHH
Q 043205 7 RIVKVNGINMHVAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLID 76 (207)
Q Consensus 7 ~~v~~~g~~i~~~~~g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~ 76 (207)
.++..+|.+++|...|++|+|||+||++++...|..+++.|.+ +|+|+++|+||+ +...+++++.++++
T Consensus 69 ~~~~~~~~~i~Y~~~g~g~~vvliHG~~~~~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~ 147 (354)
T PLN02578 69 NFWTWRGHKIHYVVQGEGLPIVLIHGFGASAFHWRYNIPELAK-KYKVYALDLLGFGWSDKALIEYDAMVWRDQVADFVK 147 (354)
T ss_pred eEEEECCEEEEEEEcCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999987 599999999998 55667789999999
Q ss_pred HhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 77 IVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 77 ~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
++. .++++++|||+||.+++.+|.++|++++++|+++++.
T Consensus 148 ~~~--~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~ 187 (354)
T PLN02578 148 EVV--KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAG 187 (354)
T ss_pred Hhc--cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCc
Confidence 998 7899999999999999999999999999999998654
No 9
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.82 E-value=2.2e-19 Score=144.68 Aligned_cols=112 Identities=29% Similarity=0.463 Sum_probs=93.4
Q ss_pred ceEEEEEC-----CEEEEEEeeCCCcEEEEECCCCCChhhHHH---HHHHHHhCCCEEEEeCCCCC--Ch---------h
Q 043205 5 QHRIVKVN-----GINMHVAEKGQGPVILFLHGFPELWYSWRH---QITALASLGYRAVAPDLRGY--TC---------F 65 (207)
Q Consensus 5 ~~~~v~~~-----g~~i~~~~~g~~~~lvllHG~~~~~~~~~~---~~~~l~~~g~~v~~~D~~G~--~~---------~ 65 (207)
+.+++.++ +.+++|...|++|+|||+||++.+...|.. .+..+.+.||+|+++|+||+ |. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~y~~~g~~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~ 85 (282)
T TIGR03343 6 TSKFVKINEKGLSNFRIHYNEAGNGEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGL 85 (282)
T ss_pred cceEEEcccccccceeEEEEecCCCCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCcccccc
Confidence 44556554 578999998989999999999988877754 34566666899999999999 11 1
Q ss_pred hhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 66 HGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.+++++.+++++++ .++++++||||||.+++.++.++|++++++|+++++.
T Consensus 86 ~~~~~l~~~l~~l~--~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 136 (282)
T TIGR03343 86 VNARAVKGLMDALD--IEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGG 136 (282)
T ss_pred hhHHHHHHHHHHcC--CCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCC
Confidence 24788999999998 7899999999999999999999999999999998753
No 10
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.82 E-value=3.3e-19 Score=142.79 Aligned_cols=112 Identities=34% Similarity=0.439 Sum_probs=101.1
Q ss_pred ceEEEEECCEEEEEEeeCC--CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHH
Q 043205 5 QHRIVKVNGINMHVAEKGQ--GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADL 71 (207)
Q Consensus 5 ~~~~v~~~g~~i~~~~~g~--~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~ 71 (207)
..++++++|.+++|...|+ +|+|||+||++++...|..+.+.|++ +|+|+++|+||+ +++.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 7 CSRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred ccceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 4567899999999998875 78999999999999999999999987 599999999998 567788999
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.+++++++ .++++++||||||.+++.++.++|++++++|++++...
T Consensus 86 ~~~i~~~~--~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~ 131 (278)
T TIGR03056 86 SALCAAEG--LSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALM 131 (278)
T ss_pred HHHHHHcC--CCCceEEEECccHHHHHHHHHhCCcccceEEEEcCccc
Confidence 99999888 78899999999999999999999999999999987654
No 11
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.81 E-value=2.9e-19 Score=144.28 Aligned_cols=108 Identities=20% Similarity=0.309 Sum_probs=93.9
Q ss_pred EECCEEEEEEee-CCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHHHH
Q 043205 10 KVNGINMHVAEK-GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLIDI 77 (207)
Q Consensus 10 ~~~g~~i~~~~~-g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~ 77 (207)
+.||-+++|... +++|+|||+||++.+...|..+...|.+.||+|+++|+||+ +++++++++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~ 82 (273)
T PLN02211 3 EENGEEVTDMKPNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSS 82 (273)
T ss_pred cccccccccccccCCCCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHh
Confidence 357888899876 56899999999999999999999999888999999999998 445667788888888
Q ss_pred hCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 78 VAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 78 l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
+.. .++++++||||||+++..++.++|++|+++|++++..
T Consensus 83 l~~-~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~ 122 (273)
T PLN02211 83 LPE-NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATM 122 (273)
T ss_pred cCC-CCCEEEEEECchHHHHHHHHHhChhheeEEEEecccc
Confidence 742 4799999999999999999999999999999997643
No 12
>PRK10749 lysophospholipase L2; Provisional
Probab=99.80 E-value=2.1e-18 Score=142.81 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=97.1
Q ss_pred ceEEEEECCEEEEEEeeC---CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--C--------------hh
Q 043205 5 QHRIVKVNGINMHVAEKG---QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--T--------------CF 65 (207)
Q Consensus 5 ~~~~v~~~g~~i~~~~~g---~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--~--------------~~ 65 (207)
..+++..+|.+++|..++ ++++||++||++++...|..++..+.+.||+|+++|+||| | .+
T Consensus 32 ~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~ 111 (330)
T PRK10749 32 EAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGHVERFN 111 (330)
T ss_pred ceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCccccHH
Confidence 455677899999999865 3579999999999999999999889888999999999999 1 34
Q ss_pred hhHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 66 HGIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 66 ~~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.+++|+..+++++.. ...+++++||||||.++..++.++|+.++++|++++..
T Consensus 112 ~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~ 166 (330)
T PRK10749 112 DYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMF 166 (330)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchh
Confidence 567788888887621 15789999999999999999999999999999998764
No 13
>PLN02965 Probable pheophorbidase
Probab=99.79 E-value=6.8e-19 Score=140.48 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=83.5
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHHHHhCCCC-CcEEEEEeChh
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLIDIVAPND-EKMFVVGHDWG 93 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~~~-~~~~lvGhS~G 93 (207)
+|||+||++.+...|+.+++.|.+.+|+|+++|+||| +.+.+++|+.+++++++ . ++++++|||||
T Consensus 5 ~vvllHG~~~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~--~~~~~~lvGhSmG 82 (255)
T PLN02965 5 HFVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLP--PDHKVILVGHSIG 82 (255)
T ss_pred EEEEECCCCCCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcC--CCCCEEEEecCcc
Confidence 5999999999999999999999777899999999998 45678899999999987 5 59999999999
Q ss_pred HHHHHHHHHhCCcccceEEEeccCC
Q 043205 94 AFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 94 g~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
|.++..++.++|++|+++|++++..
T Consensus 83 G~ia~~~a~~~p~~v~~lvl~~~~~ 107 (255)
T PLN02965 83 GGSVTEALCKFTDKISMAIYVAAAM 107 (255)
T ss_pred hHHHHHHHHhCchheeEEEEEcccc
Confidence 9999999999999999999998754
No 14
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.79 E-value=2.9e-18 Score=147.42 Aligned_cols=114 Identities=20% Similarity=0.329 Sum_probs=96.4
Q ss_pred CceEEEEECCEEEEEEeeCC-----CcEEEEECCCCCChhhHHH-HHHHHHh---CCCEEEEeCCCCC-----------C
Q 043205 4 IQHRIVKVNGINMHVAEKGQ-----GPVILFLHGFPELWYSWRH-QITALAS---LGYRAVAPDLRGY-----------T 63 (207)
Q Consensus 4 ~~~~~v~~~g~~i~~~~~g~-----~~~lvllHG~~~~~~~~~~-~~~~l~~---~g~~v~~~D~~G~-----------~ 63 (207)
..+.++..++.+++|...++ +|+|||+||++++...|.. +++.|.+ .+|+|+++|+||| +
T Consensus 176 ~~~~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~yt 255 (481)
T PLN03087 176 FCTSWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYT 255 (481)
T ss_pred eeeeeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCC
Confidence 34567888899999988764 4799999999999999985 4466653 5899999999998 4
Q ss_pred hhhhHHHHH-HHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 64 CFHGIADLV-GLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 64 ~~~~~~~~~-~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.+++++++. .++++++ .++++++||||||++++.+|.++|++|+++|+++++..
T Consensus 256 l~~~a~~l~~~ll~~lg--~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~ 310 (481)
T PLN03087 256 LREHLEMIERSVLERYK--VKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYY 310 (481)
T ss_pred HHHHHHHHHHHHHHHcC--CCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCcc
Confidence 556677784 7888888 78999999999999999999999999999999997654
No 15
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.79 E-value=2.6e-18 Score=144.56 Aligned_cols=109 Identities=26% Similarity=0.406 Sum_probs=98.6
Q ss_pred EEEECCEEEEEEeeCC--CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--------------ChhhhHHHH
Q 043205 8 IVKVNGINMHVAEKGQ--GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--------------TCFHGIADL 71 (207)
Q Consensus 8 ~v~~~g~~i~~~~~g~--~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------------~~~~~~~~~ 71 (207)
.+..+|.+++|...|+ +|+|||+||++.+...|+.+++.|++ +|+|+++|+||| +.+.+++++
T Consensus 109 ~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 109 QASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred EEcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 4567889999998884 68999999999999999999999987 699999999998 345678999
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
..++++++ .++++++|||+||.+++.+|.++|++|+++|+++++..
T Consensus 188 ~~~i~~l~--~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~ 233 (383)
T PLN03084 188 ESLIDELK--SDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLT 233 (383)
T ss_pred HHHHHHhC--CCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCc
Confidence 99999998 78999999999999999999999999999999998754
No 16
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.78 E-value=2.5e-18 Score=136.48 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=85.7
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC---------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChh
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY---------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWG 93 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~---------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~G 93 (207)
++|+|||+||++++...|..+...|.+ +|+|+++|+||+ +..++++|+.+++++++ .++++++|||||
T Consensus 15 ~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l~--~~~~~lvGhS~G 91 (255)
T PRK10673 15 NNSPIVLVHGLFGSLDNLGVLARDLVN-DHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDALQ--IEKATFIGHSMG 91 (255)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHhh-CCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCceEEEEECHH
Confidence 368999999999999999999999987 599999999997 67889999999999998 788999999999
Q ss_pred HHHHHHHHHhCCcccceEEEeccCC
Q 043205 94 AFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 94 g~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
|.+++.+|.++|++|+++|+++++.
T Consensus 92 g~va~~~a~~~~~~v~~lvli~~~~ 116 (255)
T PRK10673 92 GKAVMALTALAPDRIDKLVAIDIAP 116 (255)
T ss_pred HHHHHHHHHhCHhhcceEEEEecCC
Confidence 9999999999999999999998543
No 17
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.78 E-value=1.4e-18 Score=138.46 Aligned_cols=99 Identities=28% Similarity=0.399 Sum_probs=80.9
Q ss_pred EEEEeeCCCc-EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCC------hhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 16 MHVAEKGQGP-VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYT------CFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 16 i~~~~~g~~~-~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~------~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
++|...|+++ +|||+||+++++..|..+.+.|.+. |+|+++|+||+. ...+ +++.+.+.++. .++++++
T Consensus 4 ~~y~~~G~g~~~ivllHG~~~~~~~w~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~~~~~-~~~~~~l~~~~--~~~~~lv 79 (256)
T PRK10349 4 IWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSH-FTLHLVDLPGFGRSRGFGALSL-ADMAEAVLQQA--PDKAIWL 79 (256)
T ss_pred cchhhcCCCCCeEEEECCCCCChhHHHHHHHHHhcC-CEEEEecCCCCCCCCCCCCCCH-HHHHHHHHhcC--CCCeEEE
Confidence 6788888875 6999999999999999999999875 999999999981 1122 22222233455 6789999
Q ss_pred EeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 89 GHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 89 GhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
||||||.+++.+|.++|++++++|+++++.
T Consensus 80 GhS~Gg~ia~~~a~~~p~~v~~lili~~~~ 109 (256)
T PRK10349 80 GWSLGGLVASQIALTHPERVQALVTVASSP 109 (256)
T ss_pred EECHHHHHHHHHHHhChHhhheEEEecCcc
Confidence 999999999999999999999999998753
No 18
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.78 E-value=7.1e-19 Score=146.37 Aligned_cols=110 Identities=21% Similarity=0.301 Sum_probs=91.3
Q ss_pred EEEECCEEEEEEeeCC-CcEEEEECCCCCChh------------hHHHHHH---HHHhCCCEEEEeCCCCC--------C
Q 043205 8 IVKVNGINMHVAEKGQ-GPVILFLHGFPELWY------------SWRHQIT---ALASLGYRAVAPDLRGY--------T 63 (207)
Q Consensus 8 ~v~~~g~~i~~~~~g~-~~~lvllHG~~~~~~------------~~~~~~~---~l~~~g~~v~~~D~~G~--------~ 63 (207)
+.+.+|.+++|...|+ ++++||+||+.++.. .|..++. .|...+|+|+++|+||+ +
T Consensus 40 ~~~~~~~~l~y~~~G~~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~~~~~ 119 (343)
T PRK08775 40 HAGLEDLRLRYELIGPAGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLDVPID 119 (343)
T ss_pred CCCCCCceEEEEEeccCCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCCCCCC
Confidence 4455789999999885 667788877766655 6888886 56433699999999999 4
Q ss_pred hhhhHHHHHHHHHHhCCCCCc-EEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 64 CFHGIADLVGLIDIVAPNDEK-MFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 64 ~~~~~~~~~~~~~~l~~~~~~-~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
..++++|+.+++++++ .++ ++++||||||++++.+|.++|++|+++|++++...
T Consensus 120 ~~~~a~dl~~ll~~l~--l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~~ 174 (343)
T PRK08775 120 TADQADAIALLLDALG--IARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAHR 174 (343)
T ss_pred HHHHHHHHHHHHHHcC--CCcceEEEEECHHHHHHHHHHHHChHhhheEEEECcccc
Confidence 6778999999999998 656 57999999999999999999999999999987643
No 19
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.78 E-value=3.6e-18 Score=142.43 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=91.4
Q ss_pred EEECCEEEEEEeeCC-----CcEEEEECCCCCChhh-HHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHH
Q 043205 9 VKVNGINMHVAEKGQ-----GPVILFLHGFPELWYS-WRHQITALASLGYRAVAPDLRGY-----------TCFHGIADL 71 (207)
Q Consensus 9 v~~~g~~i~~~~~g~-----~~~lvllHG~~~~~~~-~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~ 71 (207)
+..+|.+++|..+++ +++|||+||++++... |..+...|++.||+|+++|+||| +.+.+++|+
T Consensus 67 ~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv 146 (349)
T PLN02385 67 VNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDV 146 (349)
T ss_pred EcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 445788999877642 5789999999988654 68888999888999999999998 345678888
Q ss_pred HHHHHHhCCC----CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 72 VGLIDIVAPN----DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 72 ~~~~~~l~~~----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.++++.+... ..+++++||||||++++.++.++|++++++|++++..
T Consensus 147 ~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~ 197 (349)
T PLN02385 147 IEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMC 197 (349)
T ss_pred HHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccc
Confidence 8888877521 2379999999999999999999999999999999754
No 20
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.77 E-value=4.4e-18 Score=134.15 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=82.4
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC---------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY---------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGA 94 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~---------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg 94 (207)
+|+|||+||+++++..|..+.+.| + +|+|+++|+||+ +.+++++++.+++++++ .++++++||||||
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l-~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~l~~~l~~~~--~~~~~lvG~S~Gg 77 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEAL-P-DYPRLYIDLPGHGGSAAISVDGFADVSRLLSQTLQSYN--ILPYWLVGYSLGG 77 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHc-C-CCCEEEecCCCCCCCCCccccCHHHHHHHHHHHHHHcC--CCCeEEEEECHHH
Confidence 588999999999999999999988 4 599999999999 67788999999999998 7899999999999
Q ss_pred HHHHHHHHhCCc-ccceEEEeccCC
Q 043205 95 FMAWFLCLFRPD-RVKALVNMSVTF 118 (207)
Q Consensus 95 ~ia~~~a~~~p~-~v~~lv~~~~~~ 118 (207)
.+++.+|.++|+ +|+++++++++.
T Consensus 78 ~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 78 RIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred HHHHHHHHhCCcccccEEEEeCCCC
Confidence 999999999966 499999987654
No 21
>PRK06489 hypothetical protein; Provisional
Probab=99.77 E-value=4e-18 Score=142.75 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=85.8
Q ss_pred EECCEEEEEEeeCC---------CcEEEEECCCCCChhhHH--HHHHHH-------HhCCCEEEEeCCCCC--C------
Q 043205 10 KVNGINMHVAEKGQ---------GPVILFLHGFPELWYSWR--HQITAL-------ASLGYRAVAPDLRGY--T------ 63 (207)
Q Consensus 10 ~~~g~~i~~~~~g~---------~~~lvllHG~~~~~~~~~--~~~~~l-------~~~g~~v~~~D~~G~--~------ 63 (207)
.++|.+++|...|+ +|+|||+||++++...|. .+...| ...+|+|+++|+||| |
T Consensus 46 ~~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~ 125 (360)
T PRK06489 46 TLPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDG 125 (360)
T ss_pred CcCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcC
Confidence 35788999998886 789999999999988886 454444 134699999999999 1
Q ss_pred ---------hhhhHHHHHHH-HHHhCCCCCcEE-EEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 64 ---------CFHGIADLVGL-IDIVAPNDEKMF-VVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 64 ---------~~~~~~~~~~~-~~~l~~~~~~~~-lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.+++++++..+ +++++ .++++ ++||||||++++.+|.++|++|+++|++++..
T Consensus 126 ~~~~~~~~~~~~~a~~~~~~l~~~lg--i~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~ 189 (360)
T PRK06489 126 LRAAFPRYDYDDMVEAQYRLVTEGLG--VKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQP 189 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHhcC--CCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCc
Confidence 13455666564 47777 67875 89999999999999999999999999998653
No 22
>PHA02857 monoglyceride lipase; Provisional
Probab=99.77 E-value=1.1e-17 Score=134.78 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=89.4
Q ss_pred EEEEECCEEEEEEeeCC----CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--------Chhh---hHHHH
Q 043205 7 RIVKVNGINMHVAEKGQ----GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--------TCFH---GIADL 71 (207)
Q Consensus 7 ~~v~~~g~~i~~~~~g~----~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~---~~~~~ 71 (207)
.++.-||.+++|+.+.+ ++.|+++||+++++..|..++..|.+.||+|+++|+||| +... ..+|+
T Consensus 4 ~~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~ 83 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRDV 83 (276)
T ss_pred eeecCCCCEEEEEeccCCCCCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHHH
Confidence 45667899999876432 457777799999999999999999998999999999999 1233 34455
Q ss_pred HHHHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 72 VGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 72 ~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.+.+..+.. ...+++++|||+||.+++.+|.++|++++++|++++...
T Consensus 84 ~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 84 VQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred HHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 555544321 135899999999999999999999999999999997543
No 23
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.76 E-value=1.1e-17 Score=138.29 Aligned_cols=112 Identities=17% Similarity=0.301 Sum_probs=90.8
Q ss_pred EEEEECCEEEEEEeeC------CCcEEEEECCCCCCh-hhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhH
Q 043205 7 RIVKVNGINMHVAEKG------QGPVILFLHGFPELW-YSWRHQITALASLGYRAVAPDLRGY-----------TCFHGI 68 (207)
Q Consensus 7 ~~v~~~g~~i~~~~~g------~~~~lvllHG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~ 68 (207)
.+...+|.+++|..++ .+++|||+||++.+. ..|..+...|.++||+|+++|+||| +.+.++
T Consensus 36 ~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~ 115 (330)
T PLN02298 36 FFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVV 115 (330)
T ss_pred eEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHH
Confidence 3445589999987643 245799999998664 3566777889888999999999998 345578
Q ss_pred HHHHHHHHHhCCC----CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 69 ADLVGLIDIVAPN----DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 69 ~~~~~~~~~l~~~----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
+|+..+++.+... ..+++++||||||.+++.++.++|++|+++|++++..
T Consensus 116 ~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~ 169 (330)
T PLN02298 116 EDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMC 169 (330)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccc
Confidence 8999999988631 2479999999999999999999999999999998754
No 24
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.76 E-value=7.9e-18 Score=132.65 Aligned_cols=100 Identities=28% Similarity=0.449 Sum_probs=87.9
Q ss_pred EEEEeeCC----CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHHHHhCC
Q 043205 16 MHVAEKGQ----GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLIDIVAP 80 (207)
Q Consensus 16 i~~~~~g~----~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~ 80 (207)
++|...|+ +|+|||+||+++++..|..++..|.+ +|+|+++|+||+ +.++.++++.+++++++
T Consensus 1 ~~~~~~~~~~~~~~~iv~lhG~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~~- 78 (257)
T TIGR03611 1 MHYELHGPPDADAPVVVLSSGLGGSGSYWAPQLDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDALN- 78 (257)
T ss_pred CEEEEecCCCCCCCEEEEEcCCCcchhHHHHHHHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhC-
Confidence 35665552 68999999999999999999988876 699999999998 56778889999999998
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 81 NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 81 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.++++++|||+||.+++.++.++|++++++|++++..
T Consensus 79 -~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~ 115 (257)
T TIGR03611 79 -IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWS 115 (257)
T ss_pred -CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCC
Confidence 7899999999999999999999999999999998643
No 25
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.75 E-value=4.4e-18 Score=142.02 Aligned_cols=108 Identities=22% Similarity=0.303 Sum_probs=90.8
Q ss_pred EECCEEEEEEeeCC-----CcEEEEECCCCCChh-----------hHHHHHH---HHHhCCCEEEEeCCCC--C------
Q 043205 10 KVNGINMHVAEKGQ-----GPVILFLHGFPELWY-----------SWRHQIT---ALASLGYRAVAPDLRG--Y------ 62 (207)
Q Consensus 10 ~~~g~~i~~~~~g~-----~~~lvllHG~~~~~~-----------~~~~~~~---~l~~~g~~v~~~D~~G--~------ 62 (207)
.++|.+|+|..+|+ +++|||+||++++.+ .|..++. .|...+|+|+++|+|| +
T Consensus 12 ~~~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~ 91 (351)
T TIGR01392 12 VLSDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPS 91 (351)
T ss_pred ccCCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCCC
Confidence 45778999998873 579999999999764 3777652 5545679999999999 3
Q ss_pred ----------------ChhhhHHHHHHHHHHhCCCCCc-EEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 63 ----------------TCFHGIADLVGLIDIVAPNDEK-MFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 63 ----------------~~~~~~~~~~~~~~~l~~~~~~-~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++++++++..++++++ .++ ++++||||||++++.+|.++|++++++|+++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 92 SINPGGRPYGSDFPLITIRDDVKAQKLLLDHLG--IEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSAR 163 (351)
T ss_pred CCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcC--CCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCc
Confidence 23577899999999998 778 99999999999999999999999999999997654
No 26
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.75 E-value=1.8e-17 Score=127.47 Aligned_cols=90 Identities=40% Similarity=0.542 Sum_probs=82.2
Q ss_pred EEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC------------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhH
Q 043205 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY------------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGA 94 (207)
Q Consensus 27 lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg 94 (207)
|||+||++++...|..+++.|+ +||+|+++|+||+ +.++.++++.+++++++ .++++++|||+||
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~lvG~S~Gg 77 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALG--IKKVILVGHSMGG 77 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTT--TSSEEEEEETHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhcccccc--ccccccccccccc
Confidence 7999999999999999999995 6899999999998 45667899999999999 6899999999999
Q ss_pred HHHHHHHHhCCcccceEEEeccCCC
Q 043205 95 FMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 95 ~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.+++.++.++|++|+++|+++++..
T Consensus 78 ~~a~~~a~~~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 78 MIALRLAARYPDRVKGLVLLSPPPP 102 (228)
T ss_dssp HHHHHHHHHSGGGEEEEEEESESSS
T ss_pred ccccccccccccccccceeeccccc
Confidence 9999999999999999999998774
No 27
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.75 E-value=3.7e-17 Score=130.58 Aligned_cols=110 Identities=23% Similarity=0.298 Sum_probs=90.7
Q ss_pred EEEEECCEEEEEEeeC---CCcEEEEECCCCCChhh-HHHHHHHHHhCCCEEEEeCCCCC-------------ChhhhHH
Q 043205 7 RIVKVNGINMHVAEKG---QGPVILFLHGFPELWYS-WRHQITALASLGYRAVAPDLRGY-------------TCFHGIA 69 (207)
Q Consensus 7 ~~v~~~g~~i~~~~~g---~~~~lvllHG~~~~~~~-~~~~~~~l~~~g~~v~~~D~~G~-------------~~~~~~~ 69 (207)
.++++++.++.|...+ ++++|||+||++++... |..+...+.+.||+|+++|+||+ +.+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~ 84 (288)
T TIGR01250 5 GIITVDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVD 84 (288)
T ss_pred ceecCCCCeEEEEeccCCCCCCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHH
Confidence 4677888888887665 26899999998766554 45555666666899999999997 2456788
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
++..++++++ .++++++|||+||.+++.++..+|++++++|++++..
T Consensus 85 ~~~~~~~~~~--~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 85 ELEEVREKLG--LDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred HHHHHHHHcC--CCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 8888999888 6789999999999999999999999999999988654
No 28
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.74 E-value=1.1e-17 Score=130.70 Aligned_cols=100 Identities=28% Similarity=0.432 Sum_probs=88.8
Q ss_pred EEEEeeCC---CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCCCC
Q 043205 16 MHVAEKGQ---GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAPND 82 (207)
Q Consensus 16 i~~~~~g~---~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~~~ 82 (207)
++|...|+ +|++||+||++.+...|..+++.|.+ +|+|+++|+||+ +.+++++++.++++.++ .
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~~~~~~~~~l~~-~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~~--~ 78 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLRMWDPVLPALTP-DFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDHLG--I 78 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchhhHHHHHHHhhc-ccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC--C
Confidence 56766663 57899999999999999999999875 799999999998 56778899999999998 6
Q ss_pred CcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 83 EKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 83 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
++++++|||+||++++.+|.++|++++++++++++.
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~ 114 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAA 114 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCcc
Confidence 799999999999999999999999999999998654
No 29
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=128.49 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=87.1
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--------------ChhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--------------TCFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------------~~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
.++++|||||+|.+...|..-.+.|++ .++|+++|++|+ ..+.+.+-++++..+.+ ..+++|+
T Consensus 89 ~~~plVliHGyGAg~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~--L~Kmilv 165 (365)
T KOG4409|consen 89 NKTPLVLIHGYGAGLGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMG--LEKMILV 165 (365)
T ss_pred CCCcEEEEeccchhHHHHHHhhhhhhh-cCceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcC--CcceeEe
Confidence 368999999999999999999999998 599999999998 34467788888888888 8899999
Q ss_pred EeChhHHHHHHHHHhCCcccceEEEeccCCCCCCC
Q 043205 89 GHDWGAFMAWFLCLFRPDRVKALVNMSVTFDHFDP 123 (207)
Q Consensus 89 GhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~~~ 123 (207)
|||+||+++..+|.+||++|+.||+++|...+..+
T Consensus 166 GHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~ 200 (365)
T KOG4409|consen 166 GHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKP 200 (365)
T ss_pred eccchHHHHHHHHHhChHhhceEEEecccccccCC
Confidence 99999999999999999999999999986655433
No 30
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.73 E-value=2.1e-17 Score=139.29 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=89.7
Q ss_pred EECCEEEEEEeeCC-----CcEEEEECCCCCChhh-------------HHHHHH---HHHhCCCEEEEeCCCCC------
Q 043205 10 KVNGINMHVAEKGQ-----GPVILFLHGFPELWYS-------------WRHQIT---ALASLGYRAVAPDLRGY------ 62 (207)
Q Consensus 10 ~~~g~~i~~~~~g~-----~~~lvllHG~~~~~~~-------------~~~~~~---~l~~~g~~v~~~D~~G~------ 62 (207)
.++|.+++|...|. +|+|||+||++++... |..++. .|...+|+|+++|++|+
T Consensus 29 ~~~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~ 108 (379)
T PRK00175 29 VLPPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTG 108 (379)
T ss_pred CcCCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCC
Confidence 44678899998874 5899999999999875 666652 34234799999999982
Q ss_pred -------------------ChhhhHHHHHHHHHHhCCCCCc-EEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 63 -------------------TCFHGIADLVGLIDIVAPNDEK-MFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 63 -------------------~~~~~~~~~~~~~~~l~~~~~~-~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++++++++.+++++++ .++ ++++||||||++++.+|.++|++|+++|++++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 109 PSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALG--ITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSAR 183 (379)
T ss_pred CCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhC--CCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcc
Confidence 24578889999999999 778 58999999999999999999999999999997653
No 31
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.72 E-value=6.5e-17 Score=132.52 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=90.5
Q ss_pred ceEEEEE-CCEEEEEEeeCC--CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC------------ChhhhHH
Q 043205 5 QHRIVKV-NGINMHVAEKGQ--GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY------------TCFHGIA 69 (207)
Q Consensus 5 ~~~~v~~-~g~~i~~~~~g~--~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~~~~~~ 69 (207)
.+.++.. +|.+++|...|+ +++|||+||++++...+ .....+...+|+|+++|+||| +..++++
T Consensus 5 ~~~~~~~~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 83 (306)
T TIGR01249 5 VSGYLNVSDNHQLYYEQSGNPDGKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVA 83 (306)
T ss_pred cCCeEEcCCCcEEEEEECcCCCCCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHH
Confidence 3445655 578999988875 78999999998776544 334445445799999999998 2446788
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
|+..++++++ .++++++||||||.+++.++.++|++++++|++++..
T Consensus 84 dl~~l~~~l~--~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 84 DIEKLREKLG--IKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred HHHHHHHHcC--CCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 8888999988 7889999999999999999999999999999998654
No 32
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.71 E-value=9.1e-17 Score=125.24 Aligned_cols=92 Identities=34% Similarity=0.505 Sum_probs=80.9
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC------------ChhhhHHH-HHHHHHHhCCCCCcEEEEEe
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY------------TCFHGIAD-LVGLIDIVAPNDEKMFVVGH 90 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~~~~~~~-~~~~~~~l~~~~~~~~lvGh 90 (207)
+|+|||+||++++...|..+++.|+ .||+|+++|+||+ +.++.+++ +..+++.++ .++++++||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~G~ 77 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLG--IEPFFLVGY 77 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcC--CCeEEEEEe
Confidence 4899999999999999999999998 5899999999998 34556666 666777776 689999999
Q ss_pred ChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 91 DWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 91 S~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
|+||.+++.+|.++|+.+++++++++..
T Consensus 78 S~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 78 SMGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred ccHHHHHHHHHHhCchheeeeEEecCCC
Confidence 9999999999999999999999998654
No 33
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.71 E-value=1.7e-16 Score=132.79 Aligned_cols=108 Identities=25% Similarity=0.366 Sum_probs=96.1
Q ss_pred EEEECCEEEEEEeeCC--CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHH
Q 043205 8 IVKVNGINMHVAEKGQ--GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLI 75 (207)
Q Consensus 8 ~v~~~g~~i~~~~~g~--~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~ 75 (207)
.+..++.+++|...|+ +++|||+||++++...|..+...|.+. |+|+++|+||+ +...+++++..++
T Consensus 113 ~~~~~~~~i~~~~~g~~~~~~vl~~HG~~~~~~~~~~~~~~l~~~-~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~ 191 (371)
T PRK14875 113 KARIGGRTVRYLRLGEGDGTPVVLIHGFGGDLNNWLFNHAALAAG-RPVIALDLPGHGASSKAVGAGSLDELAAAVLAFL 191 (371)
T ss_pred cceEcCcEEEEecccCCCCCeEEEECCCCCccchHHHHHHHHhcC-CEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4667788899987764 689999999999999999999999875 99999999998 5677888899999
Q ss_pred HHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 76 DIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 76 ~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
+.++ ..+++++|||+||.+++.+|..+|++++++|+++++.
T Consensus 192 ~~~~--~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 192 DALG--IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred HhcC--CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence 9888 6789999999999999999999999999999998764
No 34
>PRK07581 hypothetical protein; Validated
Probab=99.70 E-value=6.3e-17 Score=134.34 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=83.6
Q ss_pred EECCEEEEEEeeCC----C-cEEEEECCCCCChhhHHHHH---HHHHhCCCEEEEeCCCCC--C--h---------hh--
Q 043205 10 KVNGINMHVAEKGQ----G-PVILFLHGFPELWYSWRHQI---TALASLGYRAVAPDLRGY--T--C---------FH-- 66 (207)
Q Consensus 10 ~~~g~~i~~~~~g~----~-~~lvllHG~~~~~~~~~~~~---~~l~~~g~~v~~~D~~G~--~--~---------~~-- 66 (207)
+++|.+++|...|+ + |+||++||+++++..|..++ +.|...+|+|+++|+||| | . +.
T Consensus 22 ~~~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~ 101 (339)
T PRK07581 22 TLPDARLAYKTYGTLNAAKDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFP 101 (339)
T ss_pred CcCCceEEEEecCccCCCCCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCC
Confidence 34678899998774 2 56777777777776675543 356555799999999999 1 1 11
Q ss_pred ---hHHHHHH----HHHHhCCCCCc-EEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 67 ---GIADLVG----LIDIVAPNDEK-MFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 67 ---~~~~~~~----~~~~l~~~~~~-~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++++.. ++++++ .++ ++++||||||++++.+|.++|++|+++|++++...
T Consensus 102 ~~~~~~~~~~~~~~l~~~lg--i~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~ 160 (339)
T PRK07581 102 HVTIYDNVRAQHRLLTEKFG--IERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAK 160 (339)
T ss_pred ceeHHHHHHHHHHHHHHHhC--CCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCC
Confidence 4677765 667888 788 47999999999999999999999999999986543
No 35
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.69 E-value=6.4e-16 Score=126.14 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=101.6
Q ss_pred ceEEEEECCEEEEEEeeCC----CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--C----------hhhhH
Q 043205 5 QHRIVKVNGINMHVAEKGQ----GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--T----------CFHGI 68 (207)
Q Consensus 5 ~~~~v~~~g~~i~~~~~g~----~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--~----------~~~~~ 68 (207)
+..+...+|..++|..+.. ..+||++||++.+...|..++..|..+||.|+++|+||| | ..++.
T Consensus 11 ~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~~~ 90 (298)
T COG2267 11 EGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFADYV 90 (298)
T ss_pred cceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHHHH
Confidence 3456677899999987753 268999999999999999999999999999999999999 4 57888
Q ss_pred HHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 69 ADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 69 ~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+|+..+++.... ...+++++||||||.|++.++.+++..++++|+.+|.+..
T Consensus 91 ~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l 144 (298)
T COG2267 91 DDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGL 144 (298)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccC
Confidence 999999998864 2579999999999999999999999999999999987754
No 36
>PRK05855 short chain dehydrogenase; Validated
Probab=99.68 E-value=6.1e-16 Score=136.44 Aligned_cols=112 Identities=29% Similarity=0.564 Sum_probs=92.3
Q ss_pred CceEEEEECCEEEEEEeeCC--CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC------------ChhhhHH
Q 043205 4 IQHRIVKVNGINMHVAEKGQ--GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY------------TCFHGIA 69 (207)
Q Consensus 4 ~~~~~v~~~g~~i~~~~~g~--~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~~~~~~ 69 (207)
.++.++..+|.+++|...|+ +|+|||+||++++...|..+.+.|.+ +|+|+++|+||| +.+++++
T Consensus 3 ~~~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~w~~~~~~L~~-~~~Vi~~D~~G~G~S~~~~~~~~~~~~~~a~ 81 (582)
T PRK05855 3 PRRTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEVWDGVAPLLAD-RFRVVAYDVRGAGRSSAPKRTAAYTLARLAD 81 (582)
T ss_pred ceEEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHHHHHHHHHhhc-ceEEEEecCCCCCCCCCCCcccccCHHHHHH
Confidence 45667888999999998874 78999999999999999999999954 799999999999 4677899
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh--CCcccceEEEeccC
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF--RPDRVKALVNMSVT 117 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~--~p~~v~~lv~~~~~ 117 (207)
|+..++++++. .++++++||||||.+++.++.+ .++++..++.++++
T Consensus 82 dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~ 130 (582)
T PRK05855 82 DFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGP 130 (582)
T ss_pred HHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCC
Confidence 99999999873 2359999999999999888876 34455555555543
No 37
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.67 E-value=3.8e-16 Score=121.72 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=73.8
Q ss_pred CC-cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--Ch---hhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 23 QG-PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--TC---FHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 23 ~~-~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--~~---~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
++ |+|||+||++++...|..+.+.|.+ +|+|+++|+||+ +. ....+++.+.+.... .++++++||||||.+
T Consensus 2 ~g~~~iv~~HG~~~~~~~~~~~~~~l~~-~~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~--~~~~~lvG~S~Gg~~ 78 (245)
T TIGR01738 2 QGNVHLVLIHGWGMNAEVFRCLDEELSA-HFTLHLVDLPGHGRSRGFGPLSLADAAEAIAAQA--PDPAIWLGWSLGGLV 78 (245)
T ss_pred CCCceEEEEcCCCCchhhHHHHHHhhcc-CeEEEEecCCcCccCCCCCCcCHHHHHHHHHHhC--CCCeEEEEEcHHHHH
Confidence 45 8999999999999999999999987 599999999998 11 011222222222333 368999999999999
Q ss_pred HHHHHHhCCcccceEEEeccCC
Q 043205 97 AWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 97 a~~~a~~~p~~v~~lv~~~~~~ 118 (207)
++.++.++|++++++|++++..
T Consensus 79 a~~~a~~~p~~v~~~il~~~~~ 100 (245)
T TIGR01738 79 ALHIAATHPDRVRALVTVASSP 100 (245)
T ss_pred HHHHHHHCHHhhheeeEecCCc
Confidence 9999999999999999997654
No 38
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.67 E-value=2e-15 Score=128.20 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=79.6
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--C--h-----------hhhHHHHHHHHHHhCCCCCcEEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--T--C-----------FHGIADLVGLIDIVAPNDEKMFV 87 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--~--~-----------~~~~~~~~~~~~~l~~~~~~~~l 87 (207)
++|+|||+||++++...|...+..|.+ +|+|+++|+||+ + . +.+++++.++++.++ .+++++
T Consensus 104 ~~p~vvllHG~~~~~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~l~--~~~~~l 180 (402)
T PLN02894 104 DAPTLVMVHGYGASQGFFFRNFDALAS-RFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKN--LSNFIL 180 (402)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHHh-CCEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHcC--CCCeEE
Confidence 468999999999999999888898987 499999999998 1 0 123456667777777 679999
Q ss_pred EEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 88 VGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+||||||.+++.+|.++|++++++|++++...
T Consensus 181 vGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~ 212 (402)
T PLN02894 181 LGHSFGGYVAAKYALKHPEHVQHLILVGPAGF 212 (402)
T ss_pred EEECHHHHHHHHHHHhCchhhcEEEEECCccc
Confidence 99999999999999999999999999986543
No 39
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.66 E-value=6.8e-15 Score=112.06 Aligned_cols=95 Identities=25% Similarity=0.255 Sum_probs=85.8
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCC-CCCcEEEEEeCh
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAP-NDEKMFVVGHDW 92 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~-~~~~~~lvGhS~ 92 (207)
+..||||||++|+..+.+.+.+.|.++||.|.+|.+||| +.+++-+++.+..+.|.. ..+.+.++|.||
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSm 94 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSM 94 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 489999999999999999999999999999999999999 677777888877777763 367899999999
Q ss_pred hHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 93 GAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 93 Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
||.+++.+|.++| ++++|.+|++...
T Consensus 95 GGv~alkla~~~p--~K~iv~m~a~~~~ 120 (243)
T COG1647 95 GGVFALKLAYHYP--PKKIVPMCAPVNV 120 (243)
T ss_pred hhHHHHHHHhhCC--ccceeeecCCccc
Confidence 9999999999999 9999999988764
No 40
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.65 E-value=5.1e-15 Score=118.69 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=78.4
Q ss_pred CcEEEEECCCCCC----hhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCC-CCCcEEEE
Q 043205 24 GPVILFLHGFPEL----WYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAP-NDEKMFVV 88 (207)
Q Consensus 24 ~~~lvllHG~~~~----~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~-~~~~~~lv 88 (207)
+++|||+||+++. ...|..+++.|+++||+|+++|+||| +...+.+|+..+++.+.. ..++++++
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~~~v~Lv 104 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGHPPVTLW 104 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4789999999864 34677788999989999999999999 344566777766555432 15789999
Q ss_pred EeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 89 GHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 89 GhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
||||||.+++.++.++|++++++|++++...
T Consensus 105 G~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 105 GLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred EECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 9999999999999999999999999986554
No 41
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.62 E-value=7.2e-15 Score=124.33 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=85.9
Q ss_pred CCEEEEEEeeCC-----CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHH
Q 043205 12 NGINMHVAEKGQ-----GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLI 75 (207)
Q Consensus 12 ~g~~i~~~~~g~-----~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~ 75 (207)
++..++|..+.+ +++|||+||++++...|..++..|.++||+|+++|+||| +.+.+.+|+..++
T Consensus 119 ~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l 198 (395)
T PLN02652 119 RRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFL 198 (395)
T ss_pred CCCEEEEEEecCCCCCCceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 346677665532 469999999999999999999999988999999999998 3445678888888
Q ss_pred HHhCCC--CCcEEEEEeChhHHHHHHHHHhCC---cccceEEEeccCC
Q 043205 76 DIVAPN--DEKMFVVGHDWGAFMAWFLCLFRP---DRVKALVNMSVTF 118 (207)
Q Consensus 76 ~~l~~~--~~~~~lvGhS~Gg~ia~~~a~~~p---~~v~~lv~~~~~~ 118 (207)
+.+... ..+++++||||||.+++.++. +| ++++++|+.++..
T Consensus 199 ~~l~~~~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l 245 (395)
T PLN02652 199 EKIRSENPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPAL 245 (395)
T ss_pred HHHHHhCCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECccc
Confidence 887632 347999999999999998765 55 4799999988654
No 42
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.62 E-value=9.7e-15 Score=141.51 Aligned_cols=112 Identities=29% Similarity=0.438 Sum_probs=91.8
Q ss_pred CceEEEEEC--CEE--EEEEeeCC---CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--C-----------
Q 043205 4 IQHRIVKVN--GIN--MHVAEKGQ---GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--T----------- 63 (207)
Q Consensus 4 ~~~~~v~~~--g~~--i~~~~~g~---~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--~----------- 63 (207)
.....+.++ +.. ++|...|+ +++|||+||++++...|..+...|.+ +|+|+++|+||| +
T Consensus 1344 l~~~~~~v~~~~~~~~i~~~~~G~~~~~~~vVllHG~~~s~~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~ 1422 (1655)
T PLN02980 1344 VRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTGEDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQT 1422 (1655)
T ss_pred CceEEEEEccCceEEEEEEEecCCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccc
Confidence 344555554 322 45555564 68999999999999999999999987 499999999998 1
Q ss_pred -----hhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 64 -----CFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 64 -----~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.+.+++++.+++++++ .++++++||||||.+++.++.++|++|+++|++++..
T Consensus 1423 ~~~~si~~~a~~l~~ll~~l~--~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p 1480 (1655)
T PLN02980 1423 EPTLSVELVADLLYKLIEHIT--PGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSP 1480 (1655)
T ss_pred cccCCHHHHHHHHHHHHHHhC--CCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCC
Confidence 3456778888889888 7899999999999999999999999999999998643
No 43
>PRK11071 esterase YqiA; Provisional
Probab=99.59 E-value=2.2e-14 Score=109.86 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=75.3
Q ss_pred cEEEEECCCCCChhhHHH--HHHHHHhC--CCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHH
Q 043205 25 PVILFLHGFPELWYSWRH--QITALASL--GYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFL 100 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~--~~~~l~~~--g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~ 100 (207)
|+||++||++++...|+. +.+.+.+. +|+++++|+||+ .++.++++.+++++++ .++++++|||+||.+++.+
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~-~~~~~~~l~~l~~~~~--~~~~~lvG~S~Gg~~a~~~ 78 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY-PADAAELLESLVLEHG--GDPLGLVGSSLGGYYATWL 78 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC-HHHHHHHHHHHHHHcC--CCCeEEEEECHHHHHHHHH
Confidence 689999999999999974 44666552 699999999997 4578888999999888 7899999999999999999
Q ss_pred HHhCCcccceEEEeccCCC
Q 043205 101 CLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 101 a~~~p~~v~~lv~~~~~~~ 119 (207)
|.++|. ++|+++++..
T Consensus 79 a~~~~~---~~vl~~~~~~ 94 (190)
T PRK11071 79 SQCFML---PAVVVNPAVR 94 (190)
T ss_pred HHHcCC---CEEEECCCCC
Confidence 999983 4678887654
No 44
>PLN02511 hydrolase
Probab=99.59 E-value=2.1e-14 Score=121.45 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=78.3
Q ss_pred CCcEEEEECCCCCChhh-H-HHHHHHHHhCCCEEEEeCCCCC--C--------hhhhHHHHHHHHHHhCCC--CCcEEEE
Q 043205 23 QGPVILFLHGFPELWYS-W-RHQITALASLGYRAVAPDLRGY--T--------CFHGIADLVGLIDIVAPN--DEKMFVV 88 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~-~-~~~~~~l~~~g~~v~~~D~~G~--~--------~~~~~~~~~~~~~~l~~~--~~~~~lv 88 (207)
.+|+||++||+++++.. | ..+...+.+.||+|+++|+||+ + .....+|+.++++++... ..+++++
T Consensus 99 ~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~~~~~~~lv 178 (388)
T PLN02511 99 DAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRYPSANLYAA 178 (388)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHCCCCCEEEE
Confidence 36899999999776543 4 5677777778999999999999 1 125678999989888731 2589999
Q ss_pred EeChhHHHHHHHHHhCCcc--cceEEEeccCCC
Q 043205 89 GHDWGAFMAWFLCLFRPDR--VKALVNMSVTFD 119 (207)
Q Consensus 89 GhS~Gg~ia~~~a~~~p~~--v~~lv~~~~~~~ 119 (207)
||||||.+++.++.++|++ ++++++++++..
T Consensus 179 G~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~ 211 (388)
T PLN02511 179 GWSLGANILVNYLGEEGENCPLSGAVSLCNPFD 211 (388)
T ss_pred EechhHHHHHHHHHhcCCCCCceEEEEECCCcC
Confidence 9999999999999999987 888888877653
No 45
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.55 E-value=1.9e-14 Score=118.79 Aligned_cols=96 Identities=29% Similarity=0.447 Sum_probs=82.5
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhC-CCEEEEeCCCCC------------ChhhhHHHHHHHHHHhCCCCCcEEEEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASL-GYRAVAPDLRGY------------TCFHGIADLVGLIDIVAPNDEKMFVVG 89 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~------------~~~~~~~~~~~~~~~l~~~~~~~~lvG 89 (207)
.+++||++|||+++...|+.+.+.|.+. |+.|+++|++|+ +......-+..++.+.. ..+++++|
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~--~~~~~lvg 134 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVF--VEPVSLVG 134 (326)
T ss_pred CCCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhc--CcceEEEE
Confidence 4789999999999999999999999875 599999999996 55566667777777777 77899999
Q ss_pred eChhHHHHHHHHHhCCcccceEE---EeccCCCC
Q 043205 90 HDWGAFMAWFLCLFRPDRVKALV---NMSVTFDH 120 (207)
Q Consensus 90 hS~Gg~ia~~~a~~~p~~v~~lv---~~~~~~~~ 120 (207)
||+||+++..+|..+|+.|++++ +++++...
T Consensus 135 hS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~ 168 (326)
T KOG1454|consen 135 HSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYS 168 (326)
T ss_pred eCcHHHHHHHHHHhCcccccceeeeccccccccc
Confidence 99999999999999999999999 55555443
No 46
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.54 E-value=1.3e-13 Score=100.10 Aligned_cols=90 Identities=29% Similarity=0.417 Sum_probs=77.2
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHh---CCCCCcEEEEEeChhHHHHHHHHH
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIV---APNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l---~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
+||++||++++...|..+...|+++||.++.+|+|++.......++.++++.+ ..+.++++++|||+||.+++.++.
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGHGDSDGADAVERVLADIRAGYPDPDRIILIGHSMGGAIAANLAA 80 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTSTTSHHSHHHHHHHHHHHHHHCTCCEEEEEEETHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCCccchhHHHHHHHHHHHhhcCCCCcEEEEEEccCcHHHHHHhh
Confidence 68999999999999999999999999999999999995445555666666653 113789999999999999999999
Q ss_pred hCCcccceEEEecc
Q 043205 103 FRPDRVKALVNMSV 116 (207)
Q Consensus 103 ~~p~~v~~lv~~~~ 116 (207)
++ .+++++|++++
T Consensus 81 ~~-~~v~~~v~~~~ 93 (145)
T PF12695_consen 81 RN-PRVKAVVLLSP 93 (145)
T ss_dssp HS-TTESEEEEESE
T ss_pred hc-cceeEEEEecC
Confidence 88 67999999998
No 47
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.53 E-value=1.4e-13 Score=109.55 Aligned_cols=111 Identities=16% Similarity=0.279 Sum_probs=92.0
Q ss_pred EEECCEEEEEEeeCC------CcEEEEECCCCCCh-hhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHH
Q 043205 9 VKVNGINMHVAEKGQ------GPVILFLHGFPELW-YSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIAD 70 (207)
Q Consensus 9 v~~~g~~i~~~~~g~------~~~lvllHG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~ 70 (207)
...+|.++.+..+-+ +..|+++||+++.. ..+..++..|+..||.|+++|++|| +.+..++|
T Consensus 33 ~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~v~D 112 (313)
T KOG1455|consen 33 TNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVVDD 112 (313)
T ss_pred EcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHHHHH
Confidence 344677887765532 34899999998765 7888899999999999999999999 77888899
Q ss_pred HHHHHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 71 LVGLIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 71 ~~~~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+....+.+.. ...+..++||||||+|++.++.+.|+..+++|++++-..
T Consensus 113 ~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 113 VISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCK 165 (313)
T ss_pred HHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccc
Confidence 8888886433 145899999999999999999999999999999987554
No 48
>PRK10985 putative hydrolase; Provisional
Probab=99.52 E-value=3.5e-13 Score=111.38 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=73.7
Q ss_pred CcEEEEECCCCCChhh--HHHHHHHHHhCCCEEEEeCCCCCC--h--------hhhHHHHHHHHHHhCC--CCCcEEEEE
Q 043205 24 GPVILFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGYT--C--------FHGIADLVGLIDIVAP--NDEKMFVVG 89 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~--~~~~~~~l~~~g~~v~~~D~~G~~--~--------~~~~~~~~~~~~~l~~--~~~~~~lvG 89 (207)
+|+||++||++++... +..++..|.++||+|+++|+||+. . ....+|+..+++.+.. ...+++++|
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~~vG 137 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHVPTAAVG 137 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHhCCCCCEEEEE
Confidence 6899999999877443 466888999999999999999981 1 1234666665555432 156899999
Q ss_pred eChhHHHHHHHHHhCCcc--cceEEEeccCCC
Q 043205 90 HDWGAFMAWFLCLFRPDR--VKALVNMSVTFD 119 (207)
Q Consensus 90 hS~Gg~ia~~~a~~~p~~--v~~lv~~~~~~~ 119 (207)
|||||.++..++..+++. ++++|++++|+.
T Consensus 138 ~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 138 YSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred ecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 999999888888776543 899999998764
No 49
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.52 E-value=8.7e-14 Score=115.42 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=83.6
Q ss_pred ECCEEEEEEeeC---CCcEEEEECCCCCChh-hH-------------------------HHHHHHHHhCCCEEEEeCCCC
Q 043205 11 VNGINMHVAEKG---QGPVILFLHGFPELWY-SW-------------------------RHQITALASLGYRAVAPDLRG 61 (207)
Q Consensus 11 ~~g~~i~~~~~g---~~~~lvllHG~~~~~~-~~-------------------------~~~~~~l~~~g~~v~~~D~~G 61 (207)
.+|.+|+++.+. ++.+|+++||+++... .+ ..++..|.++||.|+++|+||
T Consensus 5 ~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rG 84 (332)
T TIGR01607 5 KDGLLLKTYSWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQG 84 (332)
T ss_pred CCCCeEEEeeeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccc
Confidence 478888887663 3569999999998875 21 357899999999999999999
Q ss_pred C--------------ChhhhHHHHHHHHHHhCC----------------------CCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 62 Y--------------TCFHGIADLVGLIDIVAP----------------------NDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 62 ~--------------~~~~~~~~~~~~~~~l~~----------------------~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
| +.+++++|+..+++.+.. ...+++++||||||.++..++..++
T Consensus 85 HG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~ 164 (332)
T TIGR01607 85 HGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLG 164 (332)
T ss_pred cCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhc
Confidence 8 244567788888876532 0357999999999999999887654
Q ss_pred c--------ccceEEEeccCC
Q 043205 106 D--------RVKALVNMSVTF 118 (207)
Q Consensus 106 ~--------~v~~lv~~~~~~ 118 (207)
+ .++++|+++++.
T Consensus 165 ~~~~~~~~~~i~g~i~~s~~~ 185 (332)
T TIGR01607 165 KSNENNDKLNIKGCISLSGMI 185 (332)
T ss_pred cccccccccccceEEEeccce
Confidence 2 588999888765
No 50
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=108.64 Aligned_cols=93 Identities=28% Similarity=0.348 Sum_probs=79.5
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhC-CCEEEEeCCCCC-----------ChhhhHHHHHHHHHHhC-CCCCcEEEEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASL-GYRAVAPDLRGY-----------TCFHGIADLVGLIDIVA-PNDEKMFVVG 89 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~-~~~~~~~lvG 89 (207)
.+|.++++||.+.++-.|..+...+... ..+++++|+||| +.+.+.+|+-.+++.+- +...++++||
T Consensus 73 ~gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~~iilVG 152 (343)
T KOG2564|consen 73 EGPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPPQIILVG 152 (343)
T ss_pred CccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 4899999999999999999998877654 578899999999 78889999999998864 4467899999
Q ss_pred eChhHHHHHHHHHh--CCcccceEEEecc
Q 043205 90 HDWGAFMAWFLCLF--RPDRVKALVNMSV 116 (207)
Q Consensus 90 hS~Gg~ia~~~a~~--~p~~v~~lv~~~~ 116 (207)
|||||.|+.+.|.. -|. +.+++.++.
T Consensus 153 HSmGGaIav~~a~~k~lps-l~Gl~viDV 180 (343)
T KOG2564|consen 153 HSMGGAIAVHTAASKTLPS-LAGLVVIDV 180 (343)
T ss_pred ccccchhhhhhhhhhhchh-hhceEEEEE
Confidence 99999999888764 465 888888874
No 51
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.51 E-value=1.7e-13 Score=110.79 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=74.8
Q ss_pred CCcEEEEECCCCCCh-hhHHHH-HHH-HHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhC----CCCCcE
Q 043205 23 QGPVILFLHGFPELW-YSWRHQ-ITA-LASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVA----PNDEKM 85 (207)
Q Consensus 23 ~~~~lvllHG~~~~~-~~~~~~-~~~-l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~----~~~~~~ 85 (207)
++|++|++||++++. ..|... ... +...+++|+++|++++ +.....+++..+++.+. ...+++
T Consensus 35 ~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~~i 114 (275)
T cd00707 35 SRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENV 114 (275)
T ss_pred CCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChHHE
Confidence 378999999999887 677544 333 4445799999999986 23334456666666552 125689
Q ss_pred EEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 86 FVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 86 ~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++|||+||.++..++.++|+++++++.++++.+
T Consensus 115 ~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 115 HLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred EEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 9999999999999999999999999999997654
No 52
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.48 E-value=9.4e-13 Score=106.41 Aligned_cols=96 Identities=21% Similarity=0.125 Sum_probs=75.5
Q ss_pred CCcEEEEECCCC----CChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHHHHHHhCCC---CCcEEE
Q 043205 23 QGPVILFLHGFP----ELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVGLIDIVAPN---DEKMFV 87 (207)
Q Consensus 23 ~~~~lvllHG~~----~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~~---~~~~~l 87 (207)
+++++|++||++ ++...|..+.+.|+++||+++++|++|| +.+...+|+.+.++.+... .+++++
T Consensus 25 ~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~~~i~l 104 (274)
T TIGR03100 25 HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAPHLRRIVA 104 (274)
T ss_pred CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 356888888865 3445577788999999999999999999 3444567888888877421 467999
Q ss_pred EEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 88 VGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+|||+||.+++.++.. +++|+++|++++...
T Consensus 105 ~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 105 WGLCDAASAALLYAPA-DLRVAGLVLLNPWVR 135 (274)
T ss_pred EEECHHHHHHHHHhhh-CCCccEEEEECCccC
Confidence 9999999999999865 457999999997654
No 53
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.48 E-value=6.1e-13 Score=113.01 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=75.4
Q ss_pred CCcEEEEECCCCCCh--hhHHH-HHHHHHh--CCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhC----CCCC
Q 043205 23 QGPVILFLHGFPELW--YSWRH-QITALAS--LGYRAVAPDLRGY----------TCFHGIADLVGLIDIVA----PNDE 83 (207)
Q Consensus 23 ~~~~lvllHG~~~~~--~~~~~-~~~~l~~--~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~----~~~~ 83 (207)
.+|++|+|||++++. ..|.. +...|.. .+++|+++|++|+ ....+++++.++++.+. ...+
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~ 119 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWD 119 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 379999999998653 46765 5555542 2599999999997 12345566777777652 2267
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 84 KMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 84 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++++||||||.++..++.++|++|.+++.++++.+
T Consensus 120 ~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP 155 (442)
T TIGR03230 120 NVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGP 155 (442)
T ss_pred cEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCC
Confidence 999999999999999999999999999999998644
No 54
>PRK10566 esterase; Provisional
Probab=99.48 E-value=6.8e-13 Score=105.25 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=74.1
Q ss_pred EEEEEeeC----CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCCh-----------------hhhHHHHHH
Q 043205 15 NMHVAEKG----QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTC-----------------FHGIADLVG 73 (207)
Q Consensus 15 ~i~~~~~g----~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~-----------------~~~~~~~~~ 73 (207)
.++|...+ +.|+||++||++++...|..+...|+++||.|+++|+||+.. ....+++..
T Consensus 14 ~~~~~p~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (249)
T PRK10566 14 VLHAFPAGQRDTPLPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPT 93 (249)
T ss_pred eEEEcCCCCCCCCCCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHH
Confidence 35565533 258999999999999899999999999999999999999711 012344544
Q ss_pred HHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEec
Q 043205 74 LIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMS 115 (207)
Q Consensus 74 ~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~ 115 (207)
+++.+.. +.++++++|||+||.+++.++.++|+...++++++
T Consensus 94 ~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~ 139 (249)
T PRK10566 94 LRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMG 139 (249)
T ss_pred HHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeC
Confidence 4554421 25689999999999999999998886333334443
No 55
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.48 E-value=1.4e-12 Score=111.16 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=71.4
Q ss_pred CcEEEEECCCCCCh-hhHHHHHHHHHhCCCEEEEeCCCCC--Ch-----hhh---HHHHHHHHHHhCC-CCCcEEEEEeC
Q 043205 24 GPVILFLHGFPELW-YSWRHQITALASLGYRAVAPDLRGY--TC-----FHG---IADLVGLIDIVAP-NDEKMFVVGHD 91 (207)
Q Consensus 24 ~~~lvllHG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~--~~-----~~~---~~~~~~~~~~l~~-~~~~~~lvGhS 91 (207)
.|+||++||+.+.. ..|..+...|.++||.|+++|+||+ +. .+. ...+.+.+..... +.+++.++|||
T Consensus 194 ~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S 273 (414)
T PRK05077 194 FPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFR 273 (414)
T ss_pred ccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCccccHHHHHHHHHHHHHhCcccCcccEEEEEEC
Confidence 46666666666553 5688888999999999999999998 11 122 2233333333321 25789999999
Q ss_pred hhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 92 WGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 92 ~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+||.+++.+|..+|++++++|+++++..
T Consensus 274 ~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 274 FGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred hHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 9999999999999999999999987764
No 56
>PRK13604 luxD acyl transferase; Provisional
Probab=99.46 E-value=2.1e-12 Score=104.85 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=80.8
Q ss_pred CCEEEEEE--eeC-----CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHH
Q 043205 12 NGINMHVA--EKG-----QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVG 73 (207)
Q Consensus 12 ~g~~i~~~--~~g-----~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~ 73 (207)
+|.+|.-+ .++ +.+++|++||++++...+..++..|+++||.|+.+|.+|+ +......|+..
T Consensus 18 dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~a 97 (307)
T PRK13604 18 NGQSIRVWETLPKENSPKKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLT 97 (307)
T ss_pred CCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcccccHHHHHH
Confidence 57776543 222 2479999999999887789999999999999999998764 23345678877
Q ss_pred HHHHhCC-CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 74 LIDIVAP-NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 74 ~~~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++.+.. ..+++.++||||||.+++..|...+ ++++|+.+|...
T Consensus 98 aid~lk~~~~~~I~LiG~SmGgava~~~A~~~~--v~~lI~~sp~~~ 142 (307)
T PRK13604 98 VVDWLNTRGINNLGLIAASLSARIAYEVINEID--LSFLITAVGVVN 142 (307)
T ss_pred HHHHHHhcCCCceEEEEECHHHHHHHHHhcCCC--CCEEEEcCCccc
Confidence 7777653 2568999999999999877776443 888888876544
No 57
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.45 E-value=6.9e-14 Score=105.25 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=96.1
Q ss_pred CCceEEEEECCEEEEEEeeCCCc-EEEEECCCC-CChhhHHHHHHHHHhCC-CEEEEeCCCCC-------------Chhh
Q 043205 3 GIQHRIVKVNGINMHVAEKGQGP-VILFLHGFP-ELWYSWRHQITALASLG-YRAVAPDLRGY-------------TCFH 66 (207)
Q Consensus 3 ~~~~~~v~~~g~~i~~~~~g~~~-~lvllHG~~-~~~~~~~~~~~~l~~~g-~~v~~~D~~G~-------------~~~~ 66 (207)
+.++..+.++|.+++|..+|.+| .|+++.|.- ....+|.+++..+-... +.|+++|.||| ....
T Consensus 20 ~~te~kv~vng~ql~y~~~G~G~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~ 99 (277)
T KOG2984|consen 20 DYTESKVHVNGTQLGYCKYGHGPNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMK 99 (277)
T ss_pred hhhhheeeecCceeeeeecCCCCceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHH
Confidence 45677899999999999999975 889999974 55668988887776543 89999999999 2233
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 67 GIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
-+++-..++++|+ .+++.++|+|-||..++..|+++++.|.++|++++...
T Consensus 100 Da~~avdLM~aLk--~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ay 150 (277)
T KOG2984|consen 100 DAEYAVDLMEALK--LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAY 150 (277)
T ss_pred hHHHHHHHHHHhC--CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccce
Confidence 4556677889999 89999999999999999999999999999999986654
No 58
>PLN02872 triacylglycerol lipase
Probab=99.44 E-value=4.1e-13 Score=113.50 Aligned_cols=114 Identities=23% Similarity=0.337 Sum_probs=85.2
Q ss_pred ceEEEEE-CCEEEEEEee--C-------CCcEEEEECCCCCChhhHH------HHHHHHHhCCCEEEEeCCCCC------
Q 043205 5 QHRIVKV-NGINMHVAEK--G-------QGPVILFLHGFPELWYSWR------HQITALASLGYRAVAPDLRGY------ 62 (207)
Q Consensus 5 ~~~~v~~-~g~~i~~~~~--g-------~~~~lvllHG~~~~~~~~~------~~~~~l~~~g~~v~~~D~~G~------ 62 (207)
+++.|++ ||..+..... + ++|+|+|+||++.++..|. .+...|+++||+|+++|.||+
T Consensus 45 e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh 124 (395)
T PLN02872 45 TEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGH 124 (395)
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCC
Confidence 4455544 7877776542 1 2579999999998888883 355578888999999999994
Q ss_pred -------------ChhhhH-HHHHHHHHHhCC-CCCcEEEEEeChhHHHHHHHHHhCCc---ccceEEEeccCCC
Q 043205 63 -------------TCFHGI-ADLVGLIDIVAP-NDEKMFVVGHDWGAFMAWFLCLFRPD---RVKALVNMSVTFD 119 (207)
Q Consensus 63 -------------~~~~~~-~~~~~~~~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~~p~---~v~~lv~~~~~~~ 119 (207)
+.++++ .|+.++++.+.. ..++++++|||+||.+++.++ .+|+ +|++++++++...
T Consensus 125 ~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~ 198 (395)
T PLN02872 125 VTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISY 198 (395)
T ss_pred CCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhh
Confidence 234566 789999988732 247899999999999998555 5675 6888888876643
No 59
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.43 E-value=9.1e-13 Score=111.29 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=85.3
Q ss_pred CEEEEEEeeCC-----CcEEEEECCCCCChhh-------------HHHHHH---HHHhCCCEEEEeCCCCC---------
Q 043205 13 GINMHVAEKGQ-----GPVILFLHGFPELWYS-------------WRHQIT---ALASLGYRAVAPDLRGY--------- 62 (207)
Q Consensus 13 g~~i~~~~~g~-----~~~lvllHG~~~~~~~-------------~~~~~~---~l~~~g~~v~~~D~~G~--------- 62 (207)
..+|+|..+|+ .++||++|+++++++. |..++- .|-...|-|+++|..|-
T Consensus 40 ~~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g 119 (389)
T PRK06765 40 DVQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVI 119 (389)
T ss_pred CceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCC
Confidence 46789999985 4799999999886532 555542 23333589999998751
Q ss_pred ----------------------ChhhhHHHHHHHHHHhCCCCCcEE-EEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 63 ----------------------TCFHGIADLVGLIDIVAPNDEKMF-VVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 63 ----------------------~~~~~~~~~~~~~~~l~~~~~~~~-lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
++.++++++..++++++ .+++. ++||||||++++.+|.++|++|+++|++++...
T Consensus 120 ~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lg--i~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~ 197 (389)
T PRK06765 120 TTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLG--IARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQ 197 (389)
T ss_pred CCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcC--CCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCC
Confidence 67888999999999999 78886 999999999999999999999999999987654
No 60
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.42 E-value=2.8e-12 Score=107.04 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=75.6
Q ss_pred CcEEEEECCCCCChhhH-----HHHHHHHHhCCCEEEEeCCCCC-------ChhhhHH-HHHHHHH----HhCCCCCcEE
Q 043205 24 GPVILFLHGFPELWYSW-----RHQITALASLGYRAVAPDLRGY-------TCFHGIA-DLVGLID----IVAPNDEKMF 86 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~-------~~~~~~~-~~~~~~~----~l~~~~~~~~ 86 (207)
+++||++||...+...+ +.++..|.++||+|+++|++|+ +..++.. ++.+.++ ..+ .++++
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~~--~~~i~ 139 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADRYLTLDDYINGYIDKCVDYICRTSK--LDQIS 139 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHhcCCHHHHHHHHHHHHHHHHHHHhC--CCccc
Confidence 46899999986555444 6889999999999999999987 3444443 2444333 444 67899
Q ss_pred EEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 87 VVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
++||||||.+++.++..+|++++++|+++++...
T Consensus 140 lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 140 LLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred EEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 9999999999999999999999999999987753
No 61
>PLN00021 chlorophyllase
Probab=99.40 E-value=2e-12 Score=106.19 Aligned_cols=95 Identities=27% Similarity=0.427 Sum_probs=71.7
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCCh---hhh---HHHHHHHHHH----h-----CCCCCcEEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTC---FHG---IADLVGLIDI----V-----APNDEKMFV 87 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~---~~~---~~~~~~~~~~----l-----~~~~~~~~l 87 (207)
+.|+|||+||++.+...|..+.+.|+++||.|+++|++|+.. ... +.++..++.. + ..+.+++++
T Consensus 51 ~~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~~~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l 130 (313)
T PLN00021 51 TYPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGPDGTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLAL 130 (313)
T ss_pred CCCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCCCchhhHHHHHHHHHHHHhhhhhhcccccccChhheEE
Confidence 469999999999999999999999999999999999998611 111 1222222221 1 112467999
Q ss_pred EEeChhHHHHHHHHHhCCc-----ccceEEEeccC
Q 043205 88 VGHDWGAFMAWFLCLFRPD-----RVKALVNMSVT 117 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~~p~-----~v~~lv~~~~~ 117 (207)
+|||+||.+++.+|..+++ +++++|.+++.
T Consensus 131 ~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv 165 (313)
T PLN00021 131 AGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPV 165 (313)
T ss_pred EEECcchHHHHHHHhhccccccccceeeEEeeccc
Confidence 9999999999999998874 57899988864
No 62
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.39 E-value=5.6e-12 Score=98.08 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCcEEEEECCCCCChhhHH---HHHHHHHhCCCEEEEeCCCCCC----------h------hhhHHHHHHHHHHhCC---
Q 043205 23 QGPVILFLHGFPELWYSWR---HQITALASLGYRAVAPDLRGYT----------C------FHGIADLVGLIDIVAP--- 80 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~---~~~~~l~~~g~~v~~~D~~G~~----------~------~~~~~~~~~~~~~l~~--- 80 (207)
+.|+||++||.+++...+. .+...+.+.||.|++||.+|+. . .....++..+++.+..
T Consensus 12 ~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (212)
T TIGR01840 12 PRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYS 91 (212)
T ss_pred CCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcC
Confidence 4699999999998877765 3445555679999999999961 0 1123445555555432
Q ss_pred -CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 81 -NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 81 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+.++++++|||+||.+++.++.++|+.+.+++.++++..
T Consensus 92 id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~ 131 (212)
T TIGR01840 92 IDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPY 131 (212)
T ss_pred cChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcc
Confidence 246899999999999999999999999999988886653
No 63
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.37 E-value=1.8e-11 Score=98.95 Aligned_cols=96 Identities=25% Similarity=0.364 Sum_probs=71.8
Q ss_pred CcEEEEECCCCCChhhHHHH--HHHH-HhCCCEEEEeCC--CCCC-------------------------------hhhh
Q 043205 24 GPVILFLHGFPELWYSWRHQ--ITAL-ASLGYRAVAPDL--RGYT-------------------------------CFHG 67 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~--~~~l-~~~g~~v~~~D~--~G~~-------------------------------~~~~ 67 (207)
.|+|+++||++++...|... ...+ .+.|+.|++||. +|+. ...+
T Consensus 42 ~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~ 121 (275)
T TIGR02821 42 VPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYI 121 (275)
T ss_pred CCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHHH
Confidence 58999999999999888543 3344 456899999997 3321 1112
Q ss_pred HHHHHHHHHH-hCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 68 IADLVGLIDI-VAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 68 ~~~~~~~~~~-l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.+++..++++ ++.+.++++++||||||.+++.++.++|+.+++++++++...
T Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 174 (275)
T TIGR02821 122 VQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVA 174 (275)
T ss_pred HHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccC
Confidence 4555556665 232357899999999999999999999999999999887654
No 64
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.36 E-value=1.4e-11 Score=97.72 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=84.3
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChh
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWG 93 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~G 93 (207)
.+||=+||.|+++.+++.+.+.|.+.|.+++.+++||+ +..+-...+..+++.++. .++++++|||.|
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i-~~~~i~~gHSrG 114 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGI-KGKLIFLGHSRG 114 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCC-CCceEEEEeccc
Confidence 38999999999999999999999999999999999997 667778889999999986 378899999999
Q ss_pred HHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 94 AFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 94 g~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+-.|+.++..+| ..++++++++-..
T Consensus 115 cenal~la~~~~--~~g~~lin~~G~r 139 (297)
T PF06342_consen 115 CENALQLAVTHP--LHGLVLINPPGLR 139 (297)
T ss_pred hHHHHHHHhcCc--cceEEEecCCccc
Confidence 999999999987 6799999987654
No 65
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.35 E-value=1.9e-11 Score=94.86 Aligned_cols=107 Identities=38% Similarity=0.631 Sum_probs=85.4
Q ss_pred ECCEEEEEEeeCC-CcEEEEECCCCCChhhHHHHHHHHHhC--CCEEEEeCCCCC--Ch------hhhHHHHHHHHHHhC
Q 043205 11 VNGINMHVAEKGQ-GPVILFLHGFPELWYSWRHQITALASL--GYRAVAPDLRGY--TC------FHGIADLVGLIDIVA 79 (207)
Q Consensus 11 ~~g~~i~~~~~g~-~~~lvllHG~~~~~~~~~~~~~~l~~~--g~~v~~~D~~G~--~~------~~~~~~~~~~~~~l~ 79 (207)
..+..+.|...+. +|+++++||++++...|......+... .|+++.+|+||+ +. ...++++..++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~ 86 (282)
T COG0596 7 ADGVRLAYREAGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLSAYADDLAALLDALG 86 (282)
T ss_pred CCCeEEEEeecCCCCCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCCcccccHHHHHHHHHHHHHHhC
Confidence 3455666766554 679999999999999998843444332 189999999998 32 123688889999998
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 80 PNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 80 ~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
..+++++|||+||.++..++.++|++++++++++++..
T Consensus 87 --~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 87 --LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred --CCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 66799999999999999999999999999999997654
No 66
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=98.97 Aligned_cols=96 Identities=24% Similarity=0.313 Sum_probs=84.9
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhC-CCEEEEeCCCCC---------ChhhhHHHHHHHHHHhCC--CCCcEEEEEe
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASL-GYRAVAPDLRGY---------TCFHGIADLVGLIDIVAP--NDEKMFVVGH 90 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~G~---------~~~~~~~~~~~~~~~l~~--~~~~~~lvGh 90 (207)
+.|+++++||.-++...|+.+...|++. +..++++|.|-| +...+++|+..+++..+. ...+++++||
T Consensus 51 ~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~GH 130 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITVHNYEAMAEDVKLFIDGVGGSTRLDPVVLLGH 130 (315)
T ss_pred CCCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCccccccCHHHHHHHHHHHHHHcccccccCCceeccc
Confidence 4799999999999999999999999865 789999999988 888999999999999853 2679999999
Q ss_pred ChhH-HHHHHHHHhCCcccceEEEeccCC
Q 043205 91 DWGA-FMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 91 S~Gg-~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
|||| .+++..+..+|+.+..+|+++.++
T Consensus 131 smGG~~~~m~~t~~~p~~~~rliv~D~sP 159 (315)
T KOG2382|consen 131 SMGGVKVAMAETLKKPDLIERLIVEDISP 159 (315)
T ss_pred CcchHHHHHHHHHhcCcccceeEEEecCC
Confidence 9999 777777888999999999988655
No 67
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.29 E-value=3.5e-11 Score=108.29 Aligned_cols=99 Identities=21% Similarity=0.244 Sum_probs=77.2
Q ss_pred eEEEEECCEEEEEEeeCC-----------CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--C---------
Q 043205 6 HRIVKVNGINMHVAEKGQ-----------GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--T--------- 63 (207)
Q Consensus 6 ~~~v~~~g~~i~~~~~g~-----------~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--~--------- 63 (207)
.++...++.++.|...+. .|+|+|+||++++...|..+++.|.++||+|+++|+||| +
T Consensus 420 ~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~ 499 (792)
T TIGR03502 420 VLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGV 499 (792)
T ss_pred eEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccc
Confidence 344555676666654332 258999999999999999999999988999999999998 1
Q ss_pred ----------------------hhhhHHHHHHHHHHhC------C--------CCCcEEEEEeChhHHHHHHHHHhC
Q 043205 64 ----------------------CFHGIADLVGLIDIVA------P--------NDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 64 ----------------------~~~~~~~~~~~~~~l~------~--------~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
+++.+.|+..++..+. . ...+++++||||||++++.++...
T Consensus 500 ~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 500 NATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred cccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1345577777777776 1 145899999999999999998753
No 68
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.29 E-value=6.2e-11 Score=93.09 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=71.6
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHh--------CCCEEEEeCCCCC-------ChhhhHH----HHHHHHHHh---CC
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALAS--------LGYRAVAPDLRGY-------TCFHGIA----DLVGLIDIV---AP 80 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~--------~g~~v~~~D~~G~-------~~~~~~~----~~~~~~~~l---~~ 80 (207)
.+.+||||||..++...|+.+...+.+ ..+.++.+|+... .+.+.++ .+..+++.+ ..
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~~q~~~~~~~i~~i~~~~~~~~~ 82 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQRQAEFLAEAIKYILELYKSNRP 82 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHHHHHHHHHHHHHHHHHhhhhccC
Confidence 468999999999999998888766622 2478899988775 3333333 344444444 11
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCC---cccceEEEeccCCCC
Q 043205 81 NDEKMFVVGHDWGAFMAWFLCLFRP---DRVKALVNMSVTFDH 120 (207)
Q Consensus 81 ~~~~~~lvGhS~Gg~ia~~~a~~~p---~~v~~lv~~~~~~~~ 120 (207)
..+++++|||||||.++..++...+ +.|+.+|++++|...
T Consensus 83 ~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~g 125 (225)
T PF07819_consen 83 PPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHRG 125 (225)
T ss_pred CCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCCC
Confidence 2678999999999999988876543 579999999998864
No 69
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.29 E-value=8.4e-11 Score=93.97 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=85.6
Q ss_pred eEEEEECCEEEEEEeeCC----CcEEEEECCCCCChhh-HHHHH-----HHHHhCCCEEEEeCCCCC-------------
Q 043205 6 HRIVKVNGINMHVAEKGQ----GPVILFLHGFPELWYS-WRHQI-----TALASLGYRAVAPDLRGY------------- 62 (207)
Q Consensus 6 ~~~v~~~g~~i~~~~~g~----~~~lvllHG~~~~~~~-~~~~~-----~~l~~~g~~v~~~D~~G~------------- 62 (207)
++.|++....+++...|. +|++|-.|..|.+... |..+. ..+.+ .|.++.+|.||+
T Consensus 1 eh~v~t~~G~v~V~v~G~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~-~f~i~Hi~aPGqe~ga~~~p~~y~y 79 (283)
T PF03096_consen 1 EHDVETPYGSVHVTVQGDPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQ-NFCIYHIDAPGQEEGAATLPEGYQY 79 (283)
T ss_dssp -EEEEETTEEEEEEEESS--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHT-TSEEEEEE-TTTSTT-----TT---
T ss_pred CceeccCceEEEEEEEecCCCCCceEEEeccccccchHHHHHHhcchhHHHHhh-ceEEEEEeCCCCCCCcccccccccc
Confidence 357888888999988873 7999999999988876 55554 34445 599999999998
Q ss_pred -ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 63 -TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 63 -~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
|++++++++.+++++++ .+.++.+|-..|++|..++|.++|++|.++|++++....
T Consensus 80 Psmd~LAe~l~~Vl~~f~--lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~ 136 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHFG--LKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTA 136 (283)
T ss_dssp --HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S-
T ss_pred cCHHHHHHHHHHHHHhCC--ccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCC
Confidence 89999999999999999 899999999999999999999999999999999977654
No 70
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.29 E-value=2.6e-11 Score=105.64 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=78.2
Q ss_pred EEEEeeC---CCcEEEEECCCCCChhhHH-----HHHHHHHhCCCEEEEeCCCCC-------ChhhhHH-----HHHHHH
Q 043205 16 MHVAEKG---QGPVILFLHGFPELWYSWR-----HQITALASLGYRAVAPDLRGY-------TCFHGIA-----DLVGLI 75 (207)
Q Consensus 16 i~~~~~g---~~~~lvllHG~~~~~~~~~-----~~~~~l~~~g~~v~~~D~~G~-------~~~~~~~-----~~~~~~ 75 (207)
++|.... .++||||+|++....+.|+ .++..|.++||+|+++|++|+ +.+++.. .+..++
T Consensus 177 i~Y~P~t~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~ 256 (532)
T TIGR01838 177 IQYEPTTETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVE 256 (532)
T ss_pred EEeCCCCCcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHH
Confidence 4554332 2689999999988888775 789999999999999999997 2334443 344555
Q ss_pred HHhCCCCCcEEEEEeChhHHHHH----HHHHhC-CcccceEEEeccCCCC
Q 043205 76 DIVAPNDEKMFVVGHDWGAFMAW----FLCLFR-PDRVKALVNMSVTFDH 120 (207)
Q Consensus 76 ~~l~~~~~~~~lvGhS~Gg~ia~----~~a~~~-p~~v~~lv~~~~~~~~ 120 (207)
+.++ .++++++|||+||.++. .++..+ +++++++++++++...
T Consensus 257 ~~~g--~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 257 AITG--EKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred HhcC--CCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 5556 78999999999999852 345554 7889999999987654
No 71
>PLN02442 S-formylglutathione hydrolase
Probab=99.28 E-value=1e-10 Score=94.97 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=69.7
Q ss_pred CcEEEEECCCCCChhhHHHH---HHHHHhCCCEEEEeCCCCCC--------------------------------hhhhH
Q 043205 24 GPVILFLHGFPELWYSWRHQ---ITALASLGYRAVAPDLRGYT--------------------------------CFHGI 68 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~---~~~l~~~g~~v~~~D~~G~~--------------------------------~~~~~ 68 (207)
.|+|+++||++++...|... ...+...|+.|+.+|..++. ...+.
T Consensus 47 ~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (283)
T PLN02442 47 VPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVV 126 (283)
T ss_pred CCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHH
Confidence 58999999999888777443 35566679999999964210 01123
Q ss_pred HHHHHHHHHh-C-CCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 69 ADLVGLIDIV-A-PNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 69 ~~~~~~~~~l-~-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++..+++.. . .+.++++++|||+||..++.++.++|+++++++.+++...
T Consensus 127 ~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 179 (283)
T PLN02442 127 KELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIAN 179 (283)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccC
Confidence 3333333332 1 1267899999999999999999999999999999887654
No 72
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.27 E-value=8e-11 Score=92.17 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=79.3
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
++|+|+|+.+++...|..+++.+....+.|+.++.+|. +++++++...+.+..... ..++.|+|||+||.+
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~~~~si~~la~~y~~~I~~~~~-~gp~~L~G~S~Gg~l 79 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRGDDEPPPDSIEELASRYAEAIRARQP-EGPYVLAGWSFGGIL 79 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSCTTSHEESSHHHHHHHHHHHHHHHTS-SSSEEEEEETHHHHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHhhhhCC-CCCeeehccCccHHH
Confidence 48999999999999999999999874489999999998 888899988888877763 349999999999999
Q ss_pred HHHHHHh---CCcccceEEEeccCCC
Q 043205 97 AWFLCLF---RPDRVKALVNMSVTFD 119 (207)
Q Consensus 97 a~~~a~~---~p~~v~~lv~~~~~~~ 119 (207)
|+.+|.+ ....+..+++++++.+
T Consensus 80 A~E~A~~Le~~G~~v~~l~liD~~~p 105 (229)
T PF00975_consen 80 AFEMARQLEEAGEEVSRLILIDSPPP 105 (229)
T ss_dssp HHHHHHHHHHTT-SESEEEEESCSST
T ss_pred HHHHHHHHHHhhhccCceEEecCCCC
Confidence 9999975 3345889999997654
No 73
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.26 E-value=3.7e-11 Score=112.64 Aligned_cols=95 Identities=17% Similarity=0.305 Sum_probs=73.5
Q ss_pred CCcEEEEECCCCCChhhHHHH-----HHHHHhCCCEEEEeCCCCC-C------hhhhHHHHHHHHHHhCC----CCCcEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQ-----ITALASLGYRAVAPDLRGY-T------CFHGIADLVGLIDIVAP----NDEKMF 86 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~-----~~~l~~~g~~v~~~D~~G~-~------~~~~~~~~~~~~~~l~~----~~~~~~ 86 (207)
.++||||+||++.+.+.|+.. ++.|.++||+|+++|+ |. + ...+++++..+++.++. ..++++
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~~~~v~ 144 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDKVEGGMERNLADHVVALSEAIDTVKDVTGRDVH 144 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcC-CCCChhHcCccCCHHHHHHHHHHHHHHHHHhhCCceE
Confidence 368999999999999999865 7899999999999996 54 1 12445555444444421 136899
Q ss_pred EEEeChhHHHHHHHHHhC-CcccceEEEeccCC
Q 043205 87 VVGHDWGAFMAWFLCLFR-PDRVKALVNMSVTF 118 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~-p~~v~~lv~~~~~~ 118 (207)
++||||||.+++.+++.+ +++|+++|+++++.
T Consensus 145 lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~ 177 (994)
T PRK07868 145 LVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPV 177 (994)
T ss_pred EEEEChhHHHHHHHHHhcCCCccceEEEEeccc
Confidence 999999999999888754 56899999988875
No 74
>PRK11460 putative hydrolase; Provisional
Probab=99.24 E-value=8.5e-11 Score=92.78 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------------Ch-------hhhHHHHHHHHH--
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------------TC-------FHGIADLVGLID-- 76 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------------~~-------~~~~~~~~~~~~-- 76 (207)
.+|.||++||++++...|..+.+.|.+.+..+..++++|. +. ......+.+.++
T Consensus 15 ~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 94 (232)
T PRK11460 15 AQQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRYW 94 (232)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999876544334333332 00 111122222232
Q ss_pred --HhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 77 --IVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 77 --~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
..+.+.++++++|||+||.+++.++.++|+.+.+++.+++.+
T Consensus 95 ~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~ 138 (232)
T PRK11460 95 QQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRY 138 (232)
T ss_pred HHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccc
Confidence 333234689999999999999999999998888888777543
No 75
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.23 E-value=7.3e-11 Score=104.19 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=83.2
Q ss_pred CCEEEEEEee-----CCCcEEEEECCCCCChh---hH-HHHHHHHHhCCCEEEEeCCCCC--------Ch-hhhHHHHHH
Q 043205 12 NGINMHVAEK-----GQGPVILFLHGFPELWY---SW-RHQITALASLGYRAVAPDLRGY--------TC-FHGIADLVG 73 (207)
Q Consensus 12 ~g~~i~~~~~-----g~~~~lvllHG~~~~~~---~~-~~~~~~l~~~g~~v~~~D~~G~--------~~-~~~~~~~~~ 73 (207)
||.+|++... ++.|+||++||++.+.. .+ ......|.++||.|+++|+||+ .. ...++|+.+
T Consensus 5 DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~~~~~~D~~~ 84 (550)
T TIGR00976 5 DGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLGSDEAADGYD 84 (550)
T ss_pred CCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEecCcccchHHHH
Confidence 6778875432 23589999999987653 12 2234677888999999999998 11 567789999
Q ss_pred HHHHhCCC---CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 74 LIDIVAPN---DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 74 ~~~~l~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
+++.+..+ ..++.++|||+||.+++.+|..+|++++++|..++..
T Consensus 85 ~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~ 132 (550)
T TIGR00976 85 LVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVW 132 (550)
T ss_pred HHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCccc
Confidence 99888532 3589999999999999999999999999999877654
No 76
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.20 E-value=6.8e-11 Score=91.66 Aligned_cols=64 Identities=34% Similarity=0.451 Sum_probs=58.2
Q ss_pred CEEEEeCCCCC--------------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccC
Q 043205 52 YRAVAPDLRGY--------------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVT 117 (207)
Q Consensus 52 ~~v~~~D~~G~--------------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 117 (207)
|+|+++|+||+ +..++++++..++++++ .++++++||||||.+++.+|..+|++|+++|+++++
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALG--IKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHT--TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhC--CCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 67899999998 34567899999999999 778999999999999999999999999999999986
No 77
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.19 E-value=3.8e-10 Score=89.61 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=97.0
Q ss_pred ceEEEEECCEEEEEEeeCC----CcEEEEECCCCCChhh-HHHHH-----HHHHhCCCEEEEeCCCCC------------
Q 043205 5 QHRIVKVNGINMHVAEKGQ----GPVILFLHGFPELWYS-WRHQI-----TALASLGYRAVAPDLRGY------------ 62 (207)
Q Consensus 5 ~~~~v~~~g~~i~~~~~g~----~~~lvllHG~~~~~~~-~~~~~-----~~l~~~g~~v~~~D~~G~------------ 62 (207)
+++.|++....+|+..+|. +|+++-.|+.+.++.. +..++ ..+.++ |.++.+|.||+
T Consensus 23 ~e~~V~T~~G~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp~~p~~y~ 101 (326)
T KOG2931|consen 23 QEHDVETAHGVVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAPSFPEGYP 101 (326)
T ss_pred eeeeeccccccEEEEEecCCCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCccCCCCCC
Confidence 5667877778888888773 6899999999988765 55543 455565 99999999998
Q ss_pred --ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 63 --TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 63 --~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
|.+++++++..++++++ .+.++-+|-..|++|..++|..||++|.++|++++....
T Consensus 102 yPsmd~LAd~l~~VL~~f~--lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a 159 (326)
T KOG2931|consen 102 YPSMDDLADMLPEVLDHFG--LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCA 159 (326)
T ss_pred CCCHHHHHHHHHHHHHhcC--cceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCC
Confidence 89999999999999999 899999999999999999999999999999999976543
No 78
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.13 E-value=1.7e-10 Score=94.16 Aligned_cols=182 Identities=23% Similarity=0.423 Sum_probs=122.4
Q ss_pred CCceEEEEECCEEEEEEeeC-------CC-cEEEEECCCCCChhhHHHHHHHHHhC---------CCEEEEeCCCCC---
Q 043205 3 GIQHRIVKVNGINMHVAEKG-------QG-PVILFLHGFPELWYSWRHQITALASL---------GYRAVAPDLRGY--- 62 (207)
Q Consensus 3 ~~~~~~v~~~g~~i~~~~~g-------~~-~~lvllHG~~~~~~~~~~~~~~l~~~---------g~~v~~~D~~G~--- 62 (207)
.+.+..+++.|.+||+..-. ++ .|++++|||+++.+.+..+++.|.+. -|.|++|.+|||
T Consensus 123 ~f~qykTeIeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwS 202 (469)
T KOG2565|consen 123 QFKQYKTEIEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWS 202 (469)
T ss_pred hhhhhhhhhcceeEEEEEecCCccccCCcccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccC
Confidence 35667788899999986432 12 49999999999999999999999764 278999999999
Q ss_pred --------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEE-eccCCCCCC-----------
Q 043205 63 --------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVN-MSVTFDHFD----------- 122 (207)
Q Consensus 63 --------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~-~~~~~~~~~----------- 122 (207)
+..+.|.-+..++-.++ .+++.+-|-+||+.|+..+|..||+.|.++=+ ++...++..
T Consensus 203 d~~sk~GFn~~a~ArvmrkLMlRLg--~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~~~~s~~s~l~~~~~a~~~ 280 (469)
T KOG2565|consen 203 DAPSKTGFNAAATARVMRKLMLRLG--YNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMCFVNSPFSTLKLLYYAGFF 280 (469)
T ss_pred cCCccCCccHHHHHHHHHHHHHHhC--cceeEeecCchHHHHHHHHHhhcchhhhHhhhcccccCCcHHHHHHHHHHHhc
Confidence 45556677788888889 88999999999999999999999999988743 332211110
Q ss_pred CCCcc------ccc-chHHHHHHHhCCh-hhHhhhcCCcHHHHHH--hhcCHHHHHHHHhhccCCC-cccCCCCC
Q 043205 123 PNTSV------SNN-KRIEALRAYYGDD-YYMCRFQKPGEIEAEF--AQIGIETIIKEFFTFWTPG-LIILPKGK 186 (207)
Q Consensus 123 ~~~~~------~~~-~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~p~-~~~~~~~~ 186 (207)
+.+.. +.. ...+.+....... |+......|+.+.+++ +..+....+-..+..|+-- -.....|.
T Consensus 281 ~~~~l~sre~~d~~~p~~~~~~~lmeesgYfhiqaTkpdTiGaAl~dsPvGlAaYIleKfstwTn~~~r~l~dgg 355 (469)
T KOG2565|consen 281 PGQFLPSREFQDFHFPVGKKFDQLMEESGYFHIQATKPDTIGAALNDSPVGLAAYILEKFSTWTNTEFRSLPDGG 355 (469)
T ss_pred ccccCcchhHHHhhchhHHHHHHHHHhcCceEEecCCcchhhhhhccCchHHHHHHHHHHhhccChhhhhCCCCc
Confidence 00000 000 1111122222222 3333445588888777 4556677777777777743 34444444
No 79
>PRK10162 acetyl esterase; Provisional
Probab=99.07 E-value=1.6e-09 Score=89.39 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=69.9
Q ss_pred CcEEEEECCCC---CChhhHHHHHHHHHh-CCCEEEEeCCCCC---ChhhhHHHHHHHH-------HHhCCCCCcEEEEE
Q 043205 24 GPVILFLHGFP---ELWYSWRHQITALAS-LGYRAVAPDLRGY---TCFHGIADLVGLI-------DIVAPNDEKMFVVG 89 (207)
Q Consensus 24 ~~~lvllHG~~---~~~~~~~~~~~~l~~-~g~~v~~~D~~G~---~~~~~~~~~~~~~-------~~l~~~~~~~~lvG 89 (207)
.|+||++||.+ ++...|..+...|+. .|+.|+.+|+|.. ......+|+...+ +.++.+.++++++|
T Consensus 81 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G 160 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAG 160 (318)
T ss_pred CCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEE
Confidence 58999999976 566678888888876 4899999999886 2223334433332 33443356899999
Q ss_pred eChhHHHHHHHHHhC------CcccceEEEeccCCC
Q 043205 90 HDWGAFMAWFLCLFR------PDRVKALVNMSVTFD 119 (207)
Q Consensus 90 hS~Gg~ia~~~a~~~------p~~v~~lv~~~~~~~ 119 (207)
+|+||.+++.++.+. +.++++++++.+...
T Consensus 161 ~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~ 196 (318)
T PRK10162 161 DSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYG 196 (318)
T ss_pred ECHHHHHHHHHHHHHHhcCCCccChhheEEECCccC
Confidence 999999999988643 356889998886543
No 80
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.06 E-value=9.4e-10 Score=72.11 Aligned_cols=63 Identities=29% Similarity=0.361 Sum_probs=53.8
Q ss_pred CEEEEEEeeCC----CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHH
Q 043205 13 GINMHVAEKGQ----GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLI 75 (207)
Q Consensus 13 g~~i~~~~~g~----~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~ 75 (207)
|.+|+|+.+.+ +.+|+++||++..+..|..++..|+++||.|+++|+||| +.+++.+|+..++
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHHh
Confidence 56778776642 569999999999999999999999999999999999999 6677777777665
No 81
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.06 E-value=2.1e-09 Score=85.22 Aligned_cols=97 Identities=32% Similarity=0.445 Sum_probs=72.8
Q ss_pred CCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC---ChhhhHHHHHHHHHH--------hC----CCCCcEE
Q 043205 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY---TCFHGIADLVGLIDI--------VA----PNDEKMF 86 (207)
Q Consensus 22 g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~---~~~~~~~~~~~~~~~--------l~----~~~~~~~ 86 (207)
|..|++||+||+......|..+..+++.+||-|+.+|+... ......++..++++. +. .+..++.
T Consensus 15 g~yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~ 94 (259)
T PF12740_consen 15 GTYPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIGGPDDTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLA 94 (259)
T ss_pred CCcCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccCCCCcchhHHHHHHHHHHHHhcchhhccccccccccceE
Confidence 45799999999998877889999999999999999995553 112222222222222 11 1345899
Q ss_pred EEEeChhHHHHHHHHHhC-----CcccceEEEeccCC
Q 043205 87 VVGHDWGAFMAWFLCLFR-----PDRVKALVNMSVTF 118 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~-----p~~v~~lv~~~~~~ 118 (207)
+.|||-||-++..++..+ +.+++++++++|.-
T Consensus 95 l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 95 LAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred EeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 999999999999999887 55899999999754
No 82
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.04 E-value=1e-09 Score=90.13 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=82.8
Q ss_pred CCEEEEEEeeCC-----CcEEEEECCCCCChhh-----------HHHHHH---HHHhCCCEEEEeCCCCC----------
Q 043205 12 NGINMHVAEKGQ-----GPVILFLHGFPELWYS-----------WRHQIT---ALASLGYRAVAPDLRGY---------- 62 (207)
Q Consensus 12 ~g~~i~~~~~g~-----~~~lvllHG~~~~~~~-----------~~~~~~---~l~~~g~~v~~~D~~G~---------- 62 (207)
.+.+|.|..+|. .+.|+++|+++++++. |..++- .+--..|-|++.|-.|.
T Consensus 34 ~~~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~ 113 (368)
T COG2021 34 SDARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSI 113 (368)
T ss_pred cCcEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCc
Confidence 346788999884 4689999999886432 333331 23233588999998885
Q ss_pred --------------ChhhhHHHHHHHHHHhCCCCCcEE-EEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 63 --------------TCFHGIADLVGLIDIVAPNDEKMF-VVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 63 --------------~~~~~~~~~~~~~~~l~~~~~~~~-lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+++++++--..++++|+ .+++. +||-||||+.++.++..||++|++++.++++..
T Consensus 114 ~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LG--I~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r 183 (368)
T COG2021 114 NPGGKPYGSDFPVITIRDMVRAQRLLLDALG--IKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAAR 183 (368)
T ss_pred CCCCCccccCCCcccHHHHHHHHHHHHHhcC--cceEeeeeccChHHHHHHHHHHhChHHHhhhheeccccc
Confidence 56677776778889999 78887 899999999999999999999999999987654
No 83
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.00 E-value=1.4e-09 Score=86.61 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=71.6
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHH-hCCCE----EEEeCCCCC--------------------------ChhhhHHHHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALA-SLGYR----AVAPDLRGY--------------------------TCFHGIADLV 72 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~-~~g~~----v~~~D~~G~--------------------------~~~~~~~~~~ 72 (207)
..|.||+||++++...+..++..+. +.|.. ++.++.-|. +....+.++.
T Consensus 11 ~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 11 TTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp -EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 4699999999999999999999997 55432 444555553 3456778888
Q ss_pred HHHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCc-----ccceEEEeccCCCCC
Q 043205 73 GLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPD-----RVKALVNMSVTFDHF 121 (207)
Q Consensus 73 ~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~-----~v~~lv~~~~~~~~~ 121 (207)
.++..|.. ..+++.+|||||||..++.++..+.. .+.++|.+++|+...
T Consensus 91 ~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 91 KVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGI 146 (255)
T ss_dssp HHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTT
T ss_pred HHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcc
Confidence 88888764 26799999999999999999887532 589999999998753
No 84
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.99 E-value=4.6e-09 Score=83.59 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=82.3
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
|+++++|+.+|....|..+...+... ..++..+.||+ +++++++...+.+.+.+. ..+++|+|+|+||.+
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~QP-~GPy~L~G~S~GG~v 78 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQPFASLDDMAAAYVAAIRRVQP-EGPYVLLGWSLGGAV 78 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-ceeeccccCcccccccccCCHHHHHHHHHHHHHHhCC-CCCEEEEeeccccHH
Confidence 68999999999999999999999886 99999999998 788888888888888876 579999999999999
Q ss_pred HHHHHHh---CCcccceEEEeccCCC
Q 043205 97 AWFLCLF---RPDRVKALVNMSVTFD 119 (207)
Q Consensus 97 a~~~a~~---~p~~v~~lv~~~~~~~ 119 (207)
|..+|.+ ..+.|.-+++++++..
T Consensus 79 A~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 79 AFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 9999875 3456889999997766
No 85
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.99 E-value=2.8e-09 Score=83.03 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=51.3
Q ss_pred cEEEEECCCCC-ChhhHHHHHHHHHhCCCE---EEEeCCCCC--------------ChhhhHHHHHHHHHHhCCCCCcEE
Q 043205 25 PVILFLHGFPE-LWYSWRHQITALASLGYR---AVAPDLRGY--------------TCFHGIADLVGLIDIVAPNDEKMF 86 (207)
Q Consensus 25 ~~lvllHG~~~-~~~~~~~~~~~l~~~g~~---v~~~D~~G~--------------~~~~~~~~~~~~~~~l~~~~~~~~ 86 (207)
.||||+||.++ ....|..+.+.|.++||. ++++++-.. +..++..-|.++++.-+ . ++.
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TG--a-kVD 78 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTG--A-KVD 78 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT-----EE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHhhC--C-EEE
Confidence 58999999998 668999999999999999 899988665 11233444445555556 6 999
Q ss_pred EEEeChhHHHHHHHHHhC
Q 043205 87 VVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~ 104 (207)
+||||+||.++..+.+..
T Consensus 79 IVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 79 IVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp EEEETCHHHHHHHHHHHC
T ss_pred EEEcCCcCHHHHHHHHHc
Confidence 999999999998887643
No 86
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.98 E-value=6.3e-09 Score=79.31 Aligned_cols=88 Identities=28% Similarity=0.355 Sum_probs=68.4
Q ss_pred EEEECCCCCChhhHH--HHHHHHHhCC--CEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 27 ILFLHGFPELWYSWR--HQITALASLG--YRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 27 lvllHG~~~~~~~~~--~~~~~l~~~g--~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
|+++||+.++....+ .+...+.+.+ ..+.++|++. +.....+.+.+++++.. .+.+.|+|+|+||+.|..+|.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-~p~~a~~~l~~~i~~~~--~~~~~liGSSlGG~~A~~La~ 78 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-FPEEAIAQLEQLIEELK--PENVVLIGSSLGGFYATYLAE 78 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-CHHHHHHHHHHHHHhCC--CCCeEEEEEChHHHHHHHHHH
Confidence 789999988776553 3455666643 5678888886 56666778888888887 556999999999999999999
Q ss_pred hCCcccceEEEeccCCCC
Q 043205 103 FRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 103 ~~p~~v~~lv~~~~~~~~ 120 (207)
+++ +++ |+++|+..+
T Consensus 79 ~~~--~~a-vLiNPav~p 93 (187)
T PF05728_consen 79 RYG--LPA-VLINPAVRP 93 (187)
T ss_pred HhC--CCE-EEEcCCCCH
Confidence 986 555 888887765
No 87
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.98 E-value=9.6e-09 Score=82.73 Aligned_cols=96 Identities=24% Similarity=0.378 Sum_probs=77.3
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhC---CCEEEEeCCCCC----------------ChhhhHHHHHHHHHHhCC----
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASL---GYRAVAPDLRGY----------------TCFHGIADLVGLIDIVAP---- 80 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~---g~~v~~~D~~G~----------------~~~~~~~~~~~~~~~l~~---- 80 (207)
++.+++|+|.+|-...|..+...|.+. .+.|+++.+.|| ++++..+...++++++-.
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~ 81 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNK 81 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcC
Confidence 467999999999999999998888744 699999999998 333444444555555432
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCC---cccceEEEeccCCC
Q 043205 81 NDEKMFVVGHDWGAFMAWFLCLFRP---DRVKALVNMSVTFD 119 (207)
Q Consensus 81 ~~~~~~lvGhS~Gg~ia~~~a~~~p---~~v~~lv~~~~~~~ 119 (207)
...+++++|||.|+++++++..+.+ .+|.+++++-|...
T Consensus 82 ~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~ 123 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIE 123 (266)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccc
Confidence 2578999999999999999999998 68999999987764
No 88
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.96 E-value=5.1e-09 Score=87.94 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=71.4
Q ss_pred EEEECCEEEEE--Eee-CC--CcEEEEECCCCCChhhHH-HHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHH
Q 043205 8 IVKVNGINMHV--AEK-GQ--GPVILFLHGFPELWYSWR-HQITALASLGYRAVAPDLRGY----------TCFHGIADL 71 (207)
Q Consensus 8 ~v~~~g~~i~~--~~~-g~--~~~lvllHG~~~~~~~~~-~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~ 71 (207)
.|...|.+|.. ... +. .|+||++-|.-+...++. .+.+.|..+|+.++++|.||. +.+.+.+.|
T Consensus 169 ~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aV 248 (411)
T PF06500_consen 169 EIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAV 248 (411)
T ss_dssp EEEETTCEEEEEEEESSSSS-EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHH
T ss_pred EEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHH
Confidence 34556655432 222 22 356666666666665654 445678889999999999997 223445556
Q ss_pred HHHHHHhCC-CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 72 VGLIDIVAP-NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 72 ~~~~~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
.+.+..... +..++.++|.|+||+++.++|..++++++++|+++++...
T Consensus 249 Ld~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~ 298 (411)
T PF06500_consen 249 LDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHH 298 (411)
T ss_dssp HHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SC
T ss_pred HHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhh
Confidence 666655543 3558999999999999999999888899999999987643
No 89
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.96 E-value=1.5e-08 Score=78.98 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=73.3
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHH-HhCCCCCcEEEEEeC
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLID-IVAPNDEKMFVVGHD 91 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~-~l~~~~~~~~lvGhS 91 (207)
.++.++++|=.|+++..|+.+...|.. .+.++.+.+||. +++.+++.+..-+. -.. .+++.++|||
T Consensus 6 ~~~~L~cfP~AGGsa~~fr~W~~~lp~-~iel~avqlPGR~~r~~ep~~~di~~Lad~la~el~~~~~--d~P~alfGHS 82 (244)
T COG3208 6 ARLRLFCFPHAGGSASLFRSWSRRLPA-DIELLAVQLPGRGDRFGEPLLTDIESLADELANELLPPLL--DAPFALFGHS 82 (244)
T ss_pred CCceEEEecCCCCCHHHHHHHHhhCCc-hhheeeecCCCcccccCCcccccHHHHHHHHHHHhccccC--CCCeeecccc
Confidence 467899999999999999999998877 499999999998 66666666665555 233 5689999999
Q ss_pred hhHHHHHHHHHhCC---cccceEEEeccCCC
Q 043205 92 WGAFMAWFLCLFRP---DRVKALVNMSVTFD 119 (207)
Q Consensus 92 ~Gg~ia~~~a~~~p---~~v~~lv~~~~~~~ 119 (207)
|||++|.++|.+.- ..+.++++.++..+
T Consensus 83 mGa~lAfEvArrl~~~g~~p~~lfisg~~aP 113 (244)
T COG3208 83 MGAMLAFEVARRLERAGLPPRALFISGCRAP 113 (244)
T ss_pred hhHHHHHHHHHHHHHcCCCcceEEEecCCCC
Confidence 99999999997642 12667766665443
No 90
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.94 E-value=1.1e-08 Score=79.83 Aligned_cols=93 Identities=31% Similarity=0.370 Sum_probs=70.1
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC---------------------ChhhhHHHHHHHHHHhCCC
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY---------------------TCFHGIADLVGLIDIVAPN 81 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~---------------------~~~~~~~~~~~~~~~l~~~ 81 (207)
++|.||++|++.+-....+.+...|+++||.|++||+-+- ..+...+++...++.+...
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 92 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQ 92 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 4689999999988777778889999999999999997553 1233456666667776543
Q ss_pred ----CCcEEEEEeChhHHHHHHHHHhCCcccceEEEecc
Q 043205 82 ----DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 82 ----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~ 116 (207)
.+++.++|+||||.+++.++... +.+++.|..-+
T Consensus 93 ~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 93 PEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp TTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred cccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 35899999999999999999887 56899988776
No 91
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.93 E-value=8.7e-09 Score=88.14 Aligned_cols=112 Identities=16% Similarity=0.285 Sum_probs=76.8
Q ss_pred EEEE-CCEEEEEEe--eCCCcEEEEECCC---CCChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHH
Q 043205 8 IVKV-NGINMHVAE--KGQGPVILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVG 73 (207)
Q Consensus 8 ~v~~-~g~~i~~~~--~g~~~~lvllHG~---~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~ 73 (207)
+... +|+.+.+.. .|....-.+-+.. ......|..+++.|.+.||.+ ..|++|+ ......+++.+
T Consensus 72 ~~~~~~gv~i~vp~~~~g~~~i~~ldp~~~~~~~~~~~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~~~~~~~~Lk~ 150 (440)
T PLN02733 72 TVSLDPKTEIVVPDDRYGLYAIDILDPDVIIRLDEVYYFHDMIEQLIKWGYKE-GKTLFGFGYDFRQSNRLPETMDGLKK 150 (440)
T ss_pred eecCCCCceEEcCCCCCCceeeEEecCccccCcchHHHHHHHHHHHHHcCCcc-CCCcccCCCCccccccHHHHHHHHHH
Confidence 4455 477776653 2322222222222 355688999999999999865 7898887 22344556665
Q ss_pred HHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCc----ccceEEEeccCCCC
Q 043205 74 LIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPD----RVKALVNMSVTFDH 120 (207)
Q Consensus 74 ~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~----~v~~lv~~~~~~~~ 120 (207)
+++.+-. ..++++++||||||.++..++..+|+ .|+++|++++|+..
T Consensus 151 lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~~G 203 (440)
T PLN02733 151 KLETVYKASGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPFQG 203 (440)
T ss_pred HHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCCCC
Confidence 5554321 16799999999999999999988886 47899999988764
No 92
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.93 E-value=7.3e-09 Score=99.63 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=81.7
Q ss_pred eCCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHHHHHHhCCCCCcEEEEEeCh
Q 043205 21 KGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVGLIDIVAPNDEKMFVVGHDW 92 (207)
Q Consensus 21 ~g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~ 92 (207)
.+.+++++++||++++...|..+...|.. +++|+.+|.+|+ +++++++++.+.+..+.. ..+++++|||+
T Consensus 1065 ~~~~~~l~~lh~~~g~~~~~~~l~~~l~~-~~~v~~~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~~-~~p~~l~G~S~ 1142 (1296)
T PRK10252 1065 EGDGPTLFCFHPASGFAWQFSVLSRYLDP-QWSIYGIQSPRPDGPMQTATSLDEVCEAHLATLLEQQP-HGPYHLLGYSL 1142 (1296)
T ss_pred cCCCCCeEEecCCCCchHHHHHHHHhcCC-CCcEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhhCC-CCCEEEEEech
Confidence 35578999999999999999999999976 599999999997 677888888888887653 35899999999
Q ss_pred hHHHHHHHHHh---CCcccceEEEeccC
Q 043205 93 GAFMAWFLCLF---RPDRVKALVNMSVT 117 (207)
Q Consensus 93 Gg~ia~~~a~~---~p~~v~~lv~~~~~ 117 (207)
||.++..+|.+ .++++..++++++.
T Consensus 1143 Gg~vA~e~A~~l~~~~~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1143 GGTLAQGIAARLRARGEEVAFLGLLDTW 1170 (1296)
T ss_pred hhHHHHHHHHHHHHcCCceeEEEEecCC
Confidence 99999999985 57789999988753
No 93
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.93 E-value=5e-09 Score=81.73 Aligned_cols=98 Identities=26% Similarity=0.364 Sum_probs=60.5
Q ss_pred CCcEEEEECCCCCChhhHHHHHH-HHHhCCCEEEEeCCC--------CC--------------------ChhhhHHHHHH
Q 043205 23 QGPVILFLHGFPELWYSWRHQIT-ALASLGYRAVAPDLR--------GY--------------------TCFHGIADLVG 73 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~-~l~~~g~~v~~~D~~--------G~--------------------~~~~~~~~~~~ 73 (207)
..++||++||+|++...|..... .+...+..++.++-| |+ .+...++.+.+
T Consensus 13 ~~~lvi~LHG~G~~~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~~l~~ 92 (216)
T PF02230_consen 13 AKPLVILLHGYGDSEDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAERLDE 92 (216)
T ss_dssp -SEEEEEE--TTS-HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCcchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHHHHHH
Confidence 36899999999999977766555 222234666665433 21 11122333445
Q ss_pred HHHHh---CCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 74 LIDIV---APNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 74 ~~~~l---~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+++.. +.+.+++++.|.|+||++++.++.++|+.+.++|.+++....
T Consensus 93 li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~ 142 (216)
T PF02230_consen 93 LIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPP 142 (216)
T ss_dssp HHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TT
T ss_pred HHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccc
Confidence 55432 112568999999999999999999999999999999976643
No 94
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=98.92 E-value=6.3e-08 Score=81.02 Aligned_cols=117 Identities=23% Similarity=0.306 Sum_probs=84.2
Q ss_pred CceEEEEE-CCEEEEE--Eee---------CCCcEEEEECCCCCChh--hHHHHHHHHHhCCCEEEEeCCCCC------C
Q 043205 4 IQHRIVKV-NGINMHV--AEK---------GQGPVILFLHGFPELWY--SWRHQITALASLGYRAVAPDLRGY------T 63 (207)
Q Consensus 4 ~~~~~v~~-~g~~i~~--~~~---------g~~~~lvllHG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~------~ 63 (207)
.++.+++. ||..+.+ ... +..|.+|++||.++++. .-++++..+.++||++++++.||. |
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT 172 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT 172 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC
Confidence 35566666 5655443 211 23599999999976554 347778888889999999999996 1
Q ss_pred h----hhhHHHHHHHHHHhCCC--CCcEEEEEeChhHHHHHHHHHhCCc--ccceEEEeccCCCC
Q 043205 64 C----FHGIADLVGLIDIVAPN--DEKMFVVGHDWGAFMAWFLCLFRPD--RVKALVNMSVTFDH 120 (207)
Q Consensus 64 ~----~~~~~~~~~~~~~l~~~--~~~~~lvGhS~Gg~ia~~~a~~~p~--~v~~lv~~~~~~~~ 120 (207)
. ....+|+.++++++... ..++..+|.|+||++...+..+..+ .+.+.+.++.|+..
T Consensus 173 pr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~ 237 (409)
T KOG1838|consen 173 PRLFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDL 237 (409)
T ss_pred CceeecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchh
Confidence 1 22457888877777642 4589999999999999999876433 36777788877763
No 95
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.89 E-value=8e-09 Score=81.11 Aligned_cols=96 Identities=32% Similarity=0.398 Sum_probs=72.1
Q ss_pred CCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCC-----CCCcEE
Q 043205 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAP-----NDEKMF 86 (207)
Q Consensus 22 g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~-----~~~~~~ 86 (207)
|..|+|+|+||+......|..+..+++.+||-|++|++-.- +.....+++.+-++++-. +..++.
T Consensus 44 G~yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~kla 123 (307)
T PF07224_consen 44 GTYPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYTLFPPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLA 123 (307)
T ss_pred CCccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhcccCCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEE
Confidence 34699999999999999999999999999999999998765 112222333333322211 256899
Q ss_pred EEEeChhHHHHHHHHHhCC--cccceEEEeccC
Q 043205 87 VVGHDWGAFMAWFLCLFRP--DRVKALVNMSVT 117 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~p--~~v~~lv~~~~~ 117 (207)
++|||.||-.|..+|..+. -.+.++|-+++.
T Consensus 124 l~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV 156 (307)
T PF07224_consen 124 LSGHSRGGKTAFALALGYATSLKFSALIGIDPV 156 (307)
T ss_pred EeecCCccHHHHHHHhcccccCchhheeccccc
Confidence 9999999999999998774 247888888754
No 96
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.87 E-value=2.3e-08 Score=89.58 Aligned_cols=106 Identities=28% Similarity=0.472 Sum_probs=76.8
Q ss_pred CCEEEEEEeeCC--------CcEEEEECCCCCChhh--HHHHHHHHHhCCCEEEEeCCCCCC--------------hhhh
Q 043205 12 NGINMHVAEKGQ--------GPVILFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGYT--------------CFHG 67 (207)
Q Consensus 12 ~g~~i~~~~~g~--------~~~lvllHG~~~~~~~--~~~~~~~l~~~g~~v~~~D~~G~~--------------~~~~ 67 (207)
+|.+++.+...+ .|+||++||.+..... +......|+.+||.|+.+|.||.+ -...
T Consensus 374 dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~ 453 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVD 453 (620)
T ss_pred CCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCcc
Confidence 677887654321 2799999999855544 667788899999999999999861 1123
Q ss_pred HHHHHHHHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 68 IADLVGLIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 68 ~~~~~~~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.+|+.+.++.+.. +.+++.+.|||.||++++.++.+.| .+++.+...+..
T Consensus 454 ~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~ 507 (620)
T COG1506 454 LEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGV 507 (620)
T ss_pred HHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcc
Confidence 4555555554422 3458999999999999999999988 677777666543
No 97
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.86 E-value=2.2e-08 Score=75.39 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=58.8
Q ss_pred EEEECCCCCCh-hhHHHH-HHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHH-Hh
Q 043205 27 ILFLHGFPELW-YSWRHQ-ITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLC-LF 103 (207)
Q Consensus 27 lvllHG~~~~~-~~~~~~-~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a-~~ 103 (207)
|+++||++++. .-|... ...+... ++|-.+|+ ...+..+++..+-+++....+++++||||+|+..+++++ ..
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~---~~P~~~~W~~~l~~~i~~~~~~~ilVaHSLGc~~~l~~l~~~ 76 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDW---DNPDLDEWVQALDQAIDAIDEPTILVAHSLGCLTALRWLAEQ 76 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC-----TS--HHHHHHHHHHCCHC-TTTEEEEEETHHHHHHHHHHHHT
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEecccc---CCCCHHHHHHHHHHHHhhcCCCeEEEEeCHHHHHHHHHHhhc
Confidence 68999998774 346444 4555554 77777776 333455555555555543346799999999999999999 77
Q ss_pred CCcccceEEEeccCCC
Q 043205 104 RPDRVKALVNMSVTFD 119 (207)
Q Consensus 104 ~p~~v~~lv~~~~~~~ 119 (207)
...+|+++++++++..
T Consensus 77 ~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 77 SQKKVAGALLVAPFDP 92 (171)
T ss_dssp CCSSEEEEEEES--SC
T ss_pred ccccccEEEEEcCCCc
Confidence 7889999999998764
No 98
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.84 E-value=3.4e-08 Score=77.51 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=71.4
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHh-CCCEEEEeCCCCC-------ChhhhHHHHHHHHHHhCCC---CCcEEEEEeCh
Q 043205 24 GPVILFLHGFPELWYSWRHQITALAS-LGYRAVAPDLRGY-------TCFHGIADLVGLIDIVAPN---DEKMFVVGHDW 92 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~-~g~~v~~~D~~G~-------~~~~~~~~~~~~~~~l~~~---~~~~~lvGhS~ 92 (207)
.++++++||...+-..-..+.-.|.. .+++++.+|.+|+ +-....+|+.++.+.+... .++++++|+|+
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~g~~~~Iil~G~Si 139 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRYGSPERIILYGQSI 139 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhcCCCceEEEEEecC
Confidence 48999999995554433333444443 3799999999999 5556777887777766542 47899999999
Q ss_pred hHHHHHHHHHhCCcccceEEEeccC
Q 043205 93 GAFMAWFLCLFRPDRVKALVNMSVT 117 (207)
Q Consensus 93 Gg~ia~~~a~~~p~~v~~lv~~~~~ 117 (207)
|+..+..+|.+.| ++++|+.++-
T Consensus 140 Gt~~tv~Lasr~~--~~alVL~SPf 162 (258)
T KOG1552|consen 140 GTVPTVDLASRYP--LAAVVLHSPF 162 (258)
T ss_pred CchhhhhHhhcCC--cceEEEeccc
Confidence 9999999999998 9999999853
No 99
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.84 E-value=2.8e-08 Score=86.53 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=80.2
Q ss_pred CcEEEEECCCCCChhhH-----HHHHHHHHhCCCEEEEeCCCCC-------ChhhhHHHHHHHHHHhCC--CCCcEEEEE
Q 043205 24 GPVILFLHGFPELWYSW-----RHQITALASLGYRAVAPDLRGY-------TCFHGIADLVGLIDIVAP--NDEKMFVVG 89 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~-------~~~~~~~~~~~~~~~l~~--~~~~~~lvG 89 (207)
++|||+++.+-...+.+ +.++++|.++|+.|+.+|++.- +++++.+.+.+.++.+.. ..+++.++|
T Consensus 215 ~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~G 294 (560)
T TIGR01839 215 ARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLG 294 (560)
T ss_pred CCcEEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEE
Confidence 57999999998777766 6789999999999999998774 777887777776666532 157899999
Q ss_pred eChhHHHHHH----HHHhCCc-ccceEEEeccCCCC
Q 043205 90 HDWGAFMAWF----LCLFRPD-RVKALVNMSVTFDH 120 (207)
Q Consensus 90 hS~Gg~ia~~----~a~~~p~-~v~~lv~~~~~~~~ 120 (207)
+|+||.++.. +++++++ +|++++++.++...
T Consensus 295 yC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 295 ACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred ECcchHHHHHHHHHHHhcCCCCceeeEEeeeccccc
Confidence 9999999986 7778885 79999999887764
No 100
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.83 E-value=1.4e-08 Score=84.11 Aligned_cols=97 Identities=19% Similarity=0.301 Sum_probs=62.3
Q ss_pred CcEEEEECCCCCCh--hhH-HHHHHH-HHh--CCCEEEEeCCCCC----------ChhhhHHHHHHHHHH----hCCCCC
Q 043205 24 GPVILFLHGFPELW--YSW-RHQITA-LAS--LGYRAVAPDLRGY----------TCFHGIADLVGLIDI----VAPNDE 83 (207)
Q Consensus 24 ~~~lvllHG~~~~~--~~~-~~~~~~-l~~--~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~----l~~~~~ 83 (207)
+|+++++|||.++. ..| ..+... +.. .+++|+++|+... ........+..++.. .+...+
T Consensus 71 ~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~~~ 150 (331)
T PF00151_consen 71 KPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNFGVPPE 150 (331)
T ss_dssp SEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH---GG
T ss_pred CCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhcCCChh
Confidence 68999999998777 456 344443 444 4799999999764 222233334444433 333478
Q ss_pred cEEEEEeChhHHHHHHHHHhCCc--ccceEEEeccCCCC
Q 043205 84 KMFVVGHDWGAFMAWFLCLFRPD--RVKALVNMSVTFDH 120 (207)
Q Consensus 84 ~~~lvGhS~Gg~ia~~~a~~~p~--~v~~lv~~~~~~~~ 120 (207)
++++||||+||.+|-.++..... ++..++.++|+.+.
T Consensus 151 ~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~ 189 (331)
T PF00151_consen 151 NIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPL 189 (331)
T ss_dssp GEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TT
T ss_pred HEEEEeeccchhhhhhhhhhccCcceeeEEEecCccccc
Confidence 99999999999999999988776 89999999987654
No 101
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.80 E-value=6.5e-08 Score=75.51 Aligned_cols=95 Identities=22% Similarity=0.200 Sum_probs=67.4
Q ss_pred CcEEEEECCCCCChhhHHHH--HHHHH-hCCCEEEEeCCCCC-------------------ChhhhHHHHHHHHHHhCCC
Q 043205 24 GPVILFLHGFPELWYSWRHQ--ITALA-SLGYRAVAPDLRGY-------------------TCFHGIADLVGLIDIVAPN 81 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~--~~~l~-~~g~~v~~~D~~G~-------------------~~~~~~~~~~~~~~~l~~~ 81 (207)
.|.||++||.+++...+... ...++ ++||-|+.|+.... ....++.-+..+..+...+
T Consensus 16 ~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD 95 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARYNID 95 (220)
T ss_pred CCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhcccC
Confidence 58999999999998876543 12344 45888988885421 1111222233334444445
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
..++++.|+|.||+++..++..||+.+.++..+++..
T Consensus 96 ~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 96 PSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred CCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 7799999999999999999999999999998887654
No 102
>COG0400 Predicted esterase [General function prediction only]
Probab=98.80 E-value=3.9e-08 Score=75.98 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=70.0
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-------------------------ChhhhHHHHHHHHHHh
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-------------------------TCFHGIADLVGLIDIV 78 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-------------------------~~~~~~~~~~~~~~~l 78 (207)
.|+||++||+|++..++.+....+..+ +.++.+ +|- ....+++.+..+.++.
T Consensus 18 ~~~iilLHG~Ggde~~~~~~~~~~~P~-~~~is~--rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~~~~ 94 (207)
T COG0400 18 APLLILLHGLGGDELDLVPLPELILPN-ATLVSP--RGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELAEEY 94 (207)
T ss_pred CcEEEEEecCCCChhhhhhhhhhcCCC-CeEEcC--CCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999887755544443 554443 231 2333445555566666
Q ss_pred CCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 79 APNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 79 ~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+.+.++++++|+|.|+++++.+..++|+.+++++++++....
T Consensus 95 gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~ 136 (207)
T COG0400 95 GIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPL 136 (207)
T ss_pred CCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCC
Confidence 655689999999999999999999999999999999876654
No 103
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=98.79 E-value=6.4e-08 Score=74.01 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=80.7
Q ss_pred eeCCCcEEEEECCCCCChh--hHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCCC-CCcEE
Q 043205 20 EKGQGPVILFLHGFPELWY--SWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAPN-DEKMF 86 (207)
Q Consensus 20 ~~g~~~~lvllHG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~~-~~~~~ 86 (207)
..|+...+|++||+-.+.. ....++..|++.|+.++.+|.+|. .....++|+..+++.+... ..--+
T Consensus 29 ~tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr~v~v 108 (269)
T KOG4667|consen 29 ETGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNRVVPV 108 (269)
T ss_pred ccCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhccCceEEEE
Confidence 3455679999999976654 456778899999999999999997 5566789999999999741 22234
Q ss_pred EEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 87 VVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
++|||-||.+++.+|.++++ ++-+|.+++.+..
T Consensus 109 i~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl 141 (269)
T KOG4667|consen 109 ILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDL 141 (269)
T ss_pred EEeecCccHHHHHHHHhhcC-chheEEcccccch
Confidence 78999999999999999987 8888888877654
No 104
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.79 E-value=1.5e-08 Score=77.51 Aligned_cols=114 Identities=15% Similarity=0.226 Sum_probs=83.8
Q ss_pred CCceEEEEE---CCEEEEEEe-e--CCCcEEEEECCCCCChhhHHHHHHHH-HhCCCEEEEeCCCCC-------ChhhhH
Q 043205 3 GIQHRIVKV---NGINMHVAE-K--GQGPVILFLHGFPELWYSWRHQITAL-ASLGYRAVAPDLRGY-------TCFHGI 68 (207)
Q Consensus 3 ~~~~~~v~~---~g~~i~~~~-~--g~~~~lvllHG~~~~~~~~~~~~~~l-~~~g~~v~~~D~~G~-------~~~~~~ 68 (207)
|+.+..+++ |.++++-+. . .+.|+++++|+..++-.-.-.++..+ ...+.+|+.++.||| +-+.+.
T Consensus 51 n~pye~i~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE~GL~ 130 (300)
T KOG4391|consen 51 NMPYERIELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGSPSEEGLK 130 (300)
T ss_pred CCCceEEEEEcCcceeEeeeeecccCCCceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCCcccccee
Confidence 344444444 667776432 2 24799999999988866555555443 344899999999999 445555
Q ss_pred HHHHHHHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEecc
Q 043205 69 ADLVGLIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 69 ~~~~~~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~ 116 (207)
-|-..+++.+-. +..+++++|-|+||+++..+|++..+++.++++-++
T Consensus 131 lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENT 182 (300)
T KOG4391|consen 131 LDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENT 182 (300)
T ss_pred ccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeech
Confidence 666666666643 256899999999999999999999999999987664
No 105
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.75 E-value=3.1e-07 Score=74.67 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=68.9
Q ss_pred CcEEEEECCCCCChh--hHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCC--CCCcEEEEE
Q 043205 24 GPVILFLHGFPELWY--SWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAP--NDEKMFVVG 89 (207)
Q Consensus 24 ~~~lvllHG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~--~~~~~~lvG 89 (207)
+|.+|++||+.|++. .-+.+...+.++||.+++++.||+ .-....+|+..+++.+.. -..++..+|
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~avG 154 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVG 154 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCCceEEEE
Confidence 689999999976654 336677888999999999999998 111234777777777643 157899999
Q ss_pred eChhH-HHHHHHHHhCCc-ccceEEEeccCCC
Q 043205 90 HDWGA-FMAWFLCLFRPD-RVKALVNMSVTFD 119 (207)
Q Consensus 90 hS~Gg-~ia~~~a~~~p~-~v~~lv~~~~~~~ 119 (207)
.|+|| +++..++.+-.+ .+.+.+.++.|+.
T Consensus 155 ~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~D 186 (345)
T COG0429 155 FSLGGNMLANYLGEEGDDLPLDAAVAVSAPFD 186 (345)
T ss_pred ecccHHHHHHHHHhhccCcccceeeeeeCHHH
Confidence 99999 555555544222 4677777776653
No 106
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.74 E-value=3.3e-08 Score=76.69 Aligned_cols=80 Identities=28% Similarity=0.457 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCEEEEeCCCCC--------------ChhhhHHHHHHHHHHhCC----CCCcEEEEEeChhHHHHHHHHH
Q 043205 41 RHQITALASLGYRAVAPDLRGY--------------TCFHGIADLVGLIDIVAP----NDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 41 ~~~~~~l~~~g~~v~~~D~~G~--------------~~~~~~~~~~~~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
......|+++||.|+.+|.||. .-....+|+.+.++.+.. +.+++.++|||+||.+++.++.
T Consensus 4 ~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 4 NWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred eHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 3456778889999999999996 123346777777776632 3578999999999999999999
Q ss_pred hCCcccceEEEeccCCCC
Q 043205 103 FRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 103 ~~p~~v~~lv~~~~~~~~ 120 (207)
++|+++++++..++....
T Consensus 84 ~~~~~f~a~v~~~g~~d~ 101 (213)
T PF00326_consen 84 QHPDRFKAAVAGAGVSDL 101 (213)
T ss_dssp HTCCGSSEEEEESE-SST
T ss_pred ccceeeeeeeccceecch
Confidence 999999999998876543
No 107
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.73 E-value=6.6e-08 Score=81.58 Aligned_cols=98 Identities=23% Similarity=0.243 Sum_probs=59.9
Q ss_pred CCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------------C-------------hhh------
Q 043205 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------------T-------------CFH------ 66 (207)
Q Consensus 22 g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------------~-------------~~~------ 66 (207)
++.|+|||-||++++...+..+...|+.+||-|+++|+|.. . ...
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEEE 177 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGGH
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchhH
Confidence 34599999999999999999999999999999999999974 0 000
Q ss_pred h----------HHHHHHHHHHh---CC---------------------CCCcEEEEEeChhHHHHHHHHHhCCcccceEE
Q 043205 67 G----------IADLVGLIDIV---AP---------------------NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALV 112 (207)
Q Consensus 67 ~----------~~~~~~~~~~l---~~---------------------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 112 (207)
. +.++..+++.+ .. +.+++.++|||+||..+...+.+. .++++.|
T Consensus 178 ~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I 256 (379)
T PF03403_consen 178 FELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKAGI 256 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcceEE
Confidence 0 12222233222 10 134689999999999999888776 5699999
Q ss_pred EeccCCCC
Q 043205 113 NMSVTFDH 120 (207)
Q Consensus 113 ~~~~~~~~ 120 (207)
++++-..+
T Consensus 257 ~LD~W~~P 264 (379)
T PF03403_consen 257 LLDPWMFP 264 (379)
T ss_dssp EES---TT
T ss_pred EeCCcccC
Confidence 99976554
No 108
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.72 E-value=4.9e-08 Score=76.31 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=57.0
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhC--CCE---EE--EeCCCCC----ChhhhHHH----HHHHHHHhCCCCCcEEEEE
Q 043205 25 PVILFLHGFPELWYSWRHQITALASL--GYR---AV--APDLRGY----TCFHGIAD----LVGLIDIVAPNDEKMFVVG 89 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~--g~~---v~--~~D~~G~----~~~~~~~~----~~~~~~~l~~~~~~~~lvG 89 (207)
-.|||+||+.++..+|..+...+... .+. ++ ..+.... +++..++. +.+.++.......++++||
T Consensus 5 hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~~~~~~~n~~~T~~gI~~~g~rL~~eI~~~~~~~~~~~~~IsfIg 84 (217)
T PF05057_consen 5 HLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIVVLGYSNNEFKTFDGIDVCGERLAEEILEHIKDYESKIRKISFIG 84 (217)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhhhhcccccccccchhhHHHHHHHHHHHHHhccccccccccceEEE
Confidence 47999999999999998887777651 121 11 1111111 33333333 3333333331125899999
Q ss_pred eChhHHHHHHHHHh---CC----c-----ccceEEEeccCCCC
Q 043205 90 HDWGAFMAWFLCLF---RP----D-----RVKALVNMSVTFDH 120 (207)
Q Consensus 90 hS~Gg~ia~~~a~~---~p----~-----~v~~lv~~~~~~~~ 120 (207)
||+||.++..+... .+ + .+..++++++|...
T Consensus 85 HSLGGli~r~al~~~~~~~~~~~~~~~~~~~~~fitlatPH~G 127 (217)
T PF05057_consen 85 HSLGGLIARYALGLLHDKPQYFPGFFQKIKPHNFITLATPHLG 127 (217)
T ss_pred ecccHHHHHHHHHHhhhccccccccccceeeeeEEEeCCCCCC
Confidence 99999998766542 21 1 33455677887764
No 109
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.69 E-value=6.7e-08 Score=74.68 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=62.6
Q ss_pred EEEECCCC---CChhhHHHHHHHHHh-CCCEEEEeCCCCC---ChhhhHHHHHHHHHHhCC-------CCCcEEEEEeCh
Q 043205 27 ILFLHGFP---ELWYSWRHQITALAS-LGYRAVAPDLRGY---TCFHGIADLVGLIDIVAP-------NDEKMFVVGHDW 92 (207)
Q Consensus 27 lvllHG~~---~~~~~~~~~~~~l~~-~g~~v~~~D~~G~---~~~~~~~~~~~~~~~l~~-------~~~~~~lvGhS~ 92 (207)
||++||.+ ++......+...+++ .|+.|+.+|+|=. +.....+|+.+.++.+.. +.++++++|+|.
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SA 80 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSA 80 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETH
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccccccccccccccceeeeccccccccccccceEEeeccc
Confidence 78999976 333444555555554 7999999998865 566667776665555432 256899999999
Q ss_pred hHHHHHHHHHhCCc----ccceEEEeccCC
Q 043205 93 GAFMAWFLCLFRPD----RVKALVNMSVTF 118 (207)
Q Consensus 93 Gg~ia~~~a~~~p~----~v~~lv~~~~~~ 118 (207)
||.+++.++.+..+ .+++++++++..
T Consensus 81 Gg~la~~~~~~~~~~~~~~~~~~~~~~p~~ 110 (211)
T PF07859_consen 81 GGHLALSLALRARDRGLPKPKGIILISPWT 110 (211)
T ss_dssp HHHHHHHHHHHHHHTTTCHESEEEEESCHS
T ss_pred ccchhhhhhhhhhhhcccchhhhhcccccc
Confidence 99999999875332 489999998754
No 110
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.69 E-value=2.4e-07 Score=73.29 Aligned_cols=94 Identities=31% Similarity=0.332 Sum_probs=77.7
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC---------------C-------hhhhHHHHHHHHHHhCCC-
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY---------------T-------CFHGIADLVGLIDIVAPN- 81 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~---------------~-------~~~~~~~~~~~~~~l~~~- 81 (207)
|.||++|++.+-....+.+.+.|+..||.+++||+-+. . ......|+...++.|..+
T Consensus 28 P~VIv~hei~Gl~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~ 107 (236)
T COG0412 28 PGVIVLHEIFGLNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQP 107 (236)
T ss_pred CEEEEEecccCCchHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCC
Confidence 89999999998888999999999999999999998874 1 245567777777777532
Q ss_pred ---CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 82 ---DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 82 ---~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.+++.++|.||||.+++.++.+.| .+++.++.-+...
T Consensus 108 ~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~ 147 (236)
T COG0412 108 QVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLI 147 (236)
T ss_pred CCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCC
Confidence 467999999999999999999887 5888887765543
No 111
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.67 E-value=1.8e-07 Score=73.10 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCC-----CEEEEeCCCCC-------------------------ChhhhHHHHHHHH
Q 043205 26 VILFLHGFPELWYSWRHQITALASLG-----YRAVAPDLRGY-------------------------TCFHGIADLVGLI 75 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g-----~~v~~~D~~G~-------------------------~~~~~~~~~~~~~ 75 (207)
|.+||||++++......++..|...+ --++.+|--|. +..+...++..++
T Consensus 47 PTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~~m 126 (288)
T COG4814 47 PTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKKAM 126 (288)
T ss_pred ceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHHHH
Confidence 88999999999999999999988753 12556666664 6666788888888
Q ss_pred HHhCC--CCCcEEEEEeChhHHHHHHHHHhCCc-----ccceEEEeccCCC
Q 043205 76 DIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPD-----RVKALVNMSVTFD 119 (207)
Q Consensus 76 ~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~-----~v~~lv~~~~~~~ 119 (207)
..|+. +..++.++||||||.-..+++..|.. .++++|++++++.
T Consensus 127 syL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 127 SYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 88876 37899999999999999998876531 4899999999887
No 112
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.66 E-value=1.2e-07 Score=80.06 Aligned_cols=116 Identities=24% Similarity=0.353 Sum_probs=84.9
Q ss_pred ceEEEE-ECCEEEEEEe---e-CCCcEEEEECCCCCChhhHHH------HHHHHHhCCCEEEEeCCCCC-----------
Q 043205 5 QHRIVK-VNGINMHVAE---K-GQGPVILFLHGFPELWYSWRH------QITALASLGYRAVAPDLRGY----------- 62 (207)
Q Consensus 5 ~~~~v~-~~g~~i~~~~---~-g~~~~lvllHG~~~~~~~~~~------~~~~l~~~g~~v~~~D~~G~----------- 62 (207)
+.+.|+ .||.-+.... . +++|+|++.||.-+++..|-. +.-.|+++||.|..-+.||.
T Consensus 49 E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~ 128 (403)
T KOG2624|consen 49 EEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSP 128 (403)
T ss_pred EEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcCcccchhhcccCC
Confidence 344454 4776544332 1 457999999999999998843 45678899999999999995
Q ss_pred ---------ChhhhH-HHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCc---ccceEEEeccCCCC
Q 043205 63 ---------TCFHGI-ADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPD---RVKALVNMSVTFDH 120 (207)
Q Consensus 63 ---------~~~~~~-~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~---~v~~lv~~~~~~~~ 120 (207)
++.+++ .|+-+.++.+-. ..++++.+|||.|+.....++...|+ +|+.+++++|+...
T Consensus 129 ~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~ 201 (403)
T KOG2624|consen 129 SSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFP 201 (403)
T ss_pred cCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhh
Confidence 444443 355555555322 16799999999999999988877765 79999999987744
No 113
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.64 E-value=3.3e-07 Score=68.04 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=66.9
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
+.++++||+.+|... +....+.++.-++-.++++........+++..+-+++....++++||+||+|+..+..++.+.
T Consensus 3 ~~~lIVpG~~~Sg~~--HWq~~we~~l~~a~rveq~~w~~P~~~dWi~~l~~~v~a~~~~~vlVAHSLGc~~v~h~~~~~ 80 (181)
T COG3545 3 TDVLIVPGYGGSGPN--HWQSRWESALPNARRVEQDDWEAPVLDDWIARLEKEVNAAEGPVVLVAHSLGCATVAHWAEHI 80 (181)
T ss_pred ceEEEecCCCCCChh--HHHHHHHhhCccchhcccCCCCCCCHHHHHHHHHHHHhccCCCeEEEEecccHHHHHHHHHhh
Confidence 578999999888743 222333333233555666665555666666666666654346799999999999999999887
Q ss_pred CcccceEEEeccCCCC
Q 043205 105 PDRVKALVNMSVTFDH 120 (207)
Q Consensus 105 p~~v~~lv~~~~~~~~ 120 (207)
...|+++++++++...
T Consensus 81 ~~~V~GalLVAppd~~ 96 (181)
T COG3545 81 QRQVAGALLVAPPDVS 96 (181)
T ss_pred hhccceEEEecCCCcc
Confidence 6689999999987654
No 114
>PRK10115 protease 2; Provisional
Probab=98.62 E-value=5e-07 Score=81.84 Aligned_cols=108 Identities=14% Similarity=0.185 Sum_probs=80.2
Q ss_pred ECCEEEEE-Eee-------CCCcEEEEECCCCCChh--hHHHHHHHHHhCCCEEEEeCCCCC--------------Chhh
Q 043205 11 VNGINMHV-AEK-------GQGPVILFLHGFPELWY--SWRHQITALASLGYRAVAPDLRGY--------------TCFH 66 (207)
Q Consensus 11 ~~g~~i~~-~~~-------g~~~~lvllHG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~--------------~~~~ 66 (207)
-||.+|.+ ... ++.|+||++||..+... .|......|.++||.|+.++.||- .-..
T Consensus 424 ~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~ 503 (686)
T PRK10115 424 RDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKN 503 (686)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCC
Confidence 47877765 221 23599999999876653 455666678889999999999996 1112
Q ss_pred hHHHHHHHHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 67 GIADLVGLIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 67 ~~~~~~~~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
..+|+.+.++.+.. +.+++.+.|.|.||+++..++.++|++++++|+..+..
T Consensus 504 ~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~ 559 (686)
T PRK10115 504 TFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFV 559 (686)
T ss_pred cHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCch
Confidence 34566555555532 35789999999999999999999999999999877644
No 115
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.59 E-value=1.4e-07 Score=78.40 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=76.6
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCE---EEEeCCCCC--------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChh
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYR---AVAPDLRGY--------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWG 93 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~---v~~~D~~G~--------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~G 93 (207)
-+++++||+..+...|..+...+...|+. ++.++.++. ..+.+...+.+.+...+ .+++.++|||+|
T Consensus 60 ~pivlVhG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ql~~~V~~~l~~~g--a~~v~LigHS~G 137 (336)
T COG1075 60 EPIVLVHGLGGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYSLAVRGEQLFAYVDEVLAKTG--AKKVNLIGHSMG 137 (336)
T ss_pred ceEEEEccCcCCcchhhhhhhhhcchHHHhcccccccccccCCCccccccHHHHHHHHHHHHhhcC--CCceEEEeeccc
Confidence 49999999988888888887777777777 888887754 44555566666777777 689999999999
Q ss_pred HHHHHHHHHhCC--cccceEEEeccCCCC
Q 043205 94 AFMAWFLCLFRP--DRVKALVNMSVTFDH 120 (207)
Q Consensus 94 g~ia~~~a~~~p--~~v~~lv~~~~~~~~ 120 (207)
|.++..++...+ .+|+.++.+++|...
T Consensus 138 G~~~ry~~~~~~~~~~V~~~~tl~tp~~G 166 (336)
T COG1075 138 GLDSRYYLGVLGGANRVASVVTLGTPHHG 166 (336)
T ss_pred chhhHHHHhhcCccceEEEEEEeccCCCC
Confidence 999999998887 789999999987654
No 116
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.55 E-value=4e-07 Score=72.02 Aligned_cols=107 Identities=23% Similarity=0.341 Sum_probs=76.6
Q ss_pred ECCEEEEEE--ee----CCCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------------------
Q 043205 11 VNGINMHVA--EK----GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY---------------------- 62 (207)
Q Consensus 11 ~~g~~i~~~--~~----g~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~---------------------- 62 (207)
.+|.+|+-+ .. |+-|.||-.||++++...|..+...-+. ||.|+..|.||.
T Consensus 64 ~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g~~~~~l~wa~~-Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtr 142 (321)
T COG3458 64 YGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHDMLHWAVA-GYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTR 142 (321)
T ss_pred cCCceEEEEEEeecccCCccceEEEEeeccCCCCCcccccccccc-ceeEEEEecccCCCccccCCCCCCCCcCCceeEe
Confidence 356666532 11 3358999999999998888776665444 899999999997
Q ss_pred ---C------hhhhHHHHHHHHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 63 ---T------CFHGIADLVGLIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 63 ---~------~~~~~~~~~~~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+ ......|...+++.+.+ +.+++.+.|.|.||.+++.+++..| ++++++..-|-..
T Consensus 143 GilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~ 211 (321)
T COG3458 143 GILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLS 211 (321)
T ss_pred ecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcccccccccc
Confidence 0 11233555555555543 3678999999999999999998876 6888877654433
No 117
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.54 E-value=1.5e-06 Score=71.81 Aligned_cols=93 Identities=24% Similarity=0.261 Sum_probs=61.9
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC---------------------Chh---------hhHHHHHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY---------------------TCF---------HGIADLVG 73 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~---------------------~~~---------~~~~~~~~ 73 (207)
-|.||.+||.++....|...+. ++..||.++.+|.+|+ ... .+..|...
T Consensus 83 ~Pavv~~hGyg~~~~~~~~~~~-~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~r 161 (320)
T PF05448_consen 83 LPAVVQFHGYGGRSGDPFDLLP-WAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVR 161 (320)
T ss_dssp EEEEEEE--TT--GGGHHHHHH-HHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHH
T ss_pred cCEEEEecCCCCCCCCcccccc-cccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHH
Confidence 4799999999999888866554 5677999999999997 111 13345555
Q ss_pred HHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 74 LIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 74 ~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
.++.+.. +.+++.+.|.|+||.+++.+|+..+ +|++++...+..
T Consensus 162 avd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l 209 (320)
T PF05448_consen 162 AVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFL 209 (320)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESS
T ss_pred HHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCc
Confidence 5554433 2568999999999999999999886 588888776543
No 118
>PRK04940 hypothetical protein; Provisional
Probab=98.52 E-value=8.5e-07 Score=66.74 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=57.9
Q ss_pred EEEECCCCCChhh--HHHHH-HHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCC--CCcEEEEEeChhHHHHHHHH
Q 043205 27 ILFLHGFPELWYS--WRHQI-TALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPN--DEKMFVVGHDWGAFMAWFLC 101 (207)
Q Consensus 27 lvllHG~~~~~~~--~~~~~-~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~--~~~~~lvGhS~Gg~ia~~~a 101 (207)
|+++||+..+... .+... ..+ ..+.+++ +++...+....+.+.+.++.+... .+++.+||+|+||+.|.+++
T Consensus 2 IlYlHGF~SS~~S~~~Ka~~l~~~-~p~~~~~--~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La 78 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVLQLQFI-DPDVRLI--SYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIG 78 (180)
T ss_pred EEEeCCCCCCCCccHHHHHhheee-CCCCeEE--ECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHH
Confidence 7899999887766 42221 122 2235544 555445555555566666543211 25799999999999999999
Q ss_pred HhCCcccceEEEeccCCCC
Q 043205 102 LFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 102 ~~~p~~v~~lv~~~~~~~~ 120 (207)
.++. + ..|+++|+..|
T Consensus 79 ~~~g--~-~aVLiNPAv~P 94 (180)
T PRK04940 79 FLCG--I-RQVIFNPNLFP 94 (180)
T ss_pred HHHC--C-CEEEECCCCCh
Confidence 9986 4 56778887765
No 119
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=4e-06 Score=65.62 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=83.3
Q ss_pred CceEEEEECCEEEEEEeeC--------CCcEEEEECCCCCChhhHHHHHHHHHhC---CCEEEEeCCCCC----------
Q 043205 4 IQHRIVKVNGINMHVAEKG--------QGPVILFLHGFPELWYSWRHQITALASL---GYRAVAPDLRGY---------- 62 (207)
Q Consensus 4 ~~~~~v~~~g~~i~~~~~g--------~~~~lvllHG~~~~~~~~~~~~~~l~~~---g~~v~~~D~~G~---------- 62 (207)
|++.++..+|..++....+ +++.++++.|.+|....|..+...|..+ ..+++.+...||
T Consensus 1 m~e~~~~~~gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~ 80 (301)
T KOG3975|consen 1 MTEKEYTKSGLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLRED 80 (301)
T ss_pred CcceeeeecCCcccceeeeeeeccCCCCceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccc
Confidence 4567777877665443222 3679999999999999999988877654 145788777776
Q ss_pred ---------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC-C-cccceEEEeccCC
Q 043205 63 ---------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR-P-DRVKALVNMSVTF 118 (207)
Q Consensus 63 ---------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~-p-~~v~~lv~~~~~~ 118 (207)
+.++..+.-.+++++.-....+++++|||.|+++.+++.... + -.|.+++++-|..
T Consensus 81 ~s~~~~eifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPTI 147 (301)
T KOG3975|consen 81 HSHTNEEIFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPTI 147 (301)
T ss_pred cccccccccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecchH
Confidence 555566666667776654467999999999999999998742 2 2477777776544
No 120
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.48 E-value=2.1e-06 Score=67.81 Aligned_cols=97 Identities=14% Similarity=0.208 Sum_probs=65.2
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHH-hCCC--EEEEeCCCCC-----------ChhhhHHHHHHHHHHhCCC--CCcEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALA-SLGY--RAVAPDLRGY-----------TCFHGIADLVGLIDIVAPN--DEKMF 86 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~-~~g~--~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~~--~~~~~ 86 (207)
++..+||+||+..+...-..-...+. ..++ .++.+.+|+. +...-...+.++++.+... .++++
T Consensus 17 ~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ 96 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKRIH 96 (233)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCceEE
Confidence 46799999999988665423222232 2233 6899999986 2333345566666666532 67999
Q ss_pred EEEeChhHHHHHHHHHh----CC-----cccceEEEeccCCC
Q 043205 87 VVGHDWGAFMAWFLCLF----RP-----DRVKALVNMSVTFD 119 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~----~p-----~~v~~lv~~~~~~~ 119 (207)
+++||||+.+.+.+... .+ .++..+++++|-..
T Consensus 97 ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 97 ILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred EEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 99999999999887543 21 25778888876543
No 121
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.48 E-value=9.1e-07 Score=71.41 Aligned_cols=96 Identities=27% Similarity=0.300 Sum_probs=70.1
Q ss_pred CcEEEEECCCCCCh-hhHHHH--H-------HHHHhCCCEEEEeCCCCC--------C-hhhhHHHHHHHHHHhCCC---
Q 043205 24 GPVILFLHGFPELW-YSWRHQ--I-------TALASLGYRAVAPDLRGY--------T-CFHGIADLVGLIDIVAPN--- 81 (207)
Q Consensus 24 ~~~lvllHG~~~~~-~~~~~~--~-------~~l~~~g~~v~~~D~~G~--------~-~~~~~~~~~~~~~~l~~~--- 81 (207)
.|+||..|+++.+. ...... . ..+.++||.|+..|.||. . .....+|..++++.+..+
T Consensus 20 ~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws 99 (272)
T PF02129_consen 20 FPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPMSPNEAQDGYDTIEWIAAQPWS 99 (272)
T ss_dssp EEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TTSHHHHHHHHHHHHHHHHCTTE
T ss_pred ccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccCChhHHHHHHHHHHHHHhCCCC
Confidence 48999999998654 222211 1 128889999999999998 2 555677888888777532
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
..+|.++|.|++|...+.+|...|..+++++...+...
T Consensus 100 ~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d 137 (272)
T PF02129_consen 100 NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSD 137 (272)
T ss_dssp EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SB
T ss_pred CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCc
Confidence 35899999999999999999988888999998876554
No 122
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.48 E-value=1e-06 Score=66.70 Aligned_cols=94 Identities=24% Similarity=0.245 Sum_probs=76.7
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----ChhhhHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHH
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----TCFHGIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAW 98 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----~~~~~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~ 98 (207)
.+||+.|=++-...=..+...|+++|+.|+.+|-+-| ++++.+.|+..++++... ..++++|+|.|+|+-+..
T Consensus 4 ~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP 83 (192)
T PF06057_consen 4 LAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLP 83 (192)
T ss_pred EEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHH
Confidence 5677777665555556778999999999999998887 999999999999988754 267999999999998888
Q ss_pred HHHHhCC----cccceEEEeccCCC
Q 043205 99 FLCLFRP----DRVKALVNMSVTFD 119 (207)
Q Consensus 99 ~~a~~~p----~~v~~lv~~~~~~~ 119 (207)
....+-| ++|+.++++++...
T Consensus 84 ~~~nrLp~~~r~~v~~v~Ll~p~~~ 108 (192)
T PF06057_consen 84 FIYNRLPAALRARVAQVVLLSPSTT 108 (192)
T ss_pred HHHhhCCHHHHhheeEEEEeccCCc
Confidence 8777766 47888999986543
No 123
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.47 E-value=1.6e-06 Score=69.40 Aligned_cols=111 Identities=23% Similarity=0.214 Sum_probs=76.0
Q ss_pred EEEECCEEEEEEee---C---CCcEEEEECCCCCChhhHHHHH--HHHH-hCCCEEEEeCCCCC----------------
Q 043205 8 IVKVNGINMHVAEK---G---QGPVILFLHGFPELWYSWRHQI--TALA-SLGYRAVAPDLRGY---------------- 62 (207)
Q Consensus 8 ~v~~~g~~i~~~~~---g---~~~~lvllHG~~~~~~~~~~~~--~~l~-~~g~~v~~~D~~G~---------------- 62 (207)
.+.++|.+.+|..+ + ..|.||.+||..++.....+.. ..|+ +.||-|+.||-...
T Consensus 39 s~~~~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~ 118 (312)
T COG3509 39 SFDVNGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADR 118 (312)
T ss_pred ccccCCCccceEEEcCCCCCCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCcccccCCcccc
Confidence 45566665555432 2 2479999999999877665543 4444 45899999953332
Q ss_pred -----ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 63 -----TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 63 -----~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
....+.+-+..++.+.+.+..++++.|-|-||.++..++..+|+.+.++..+++..
T Consensus 119 ~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 119 RRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred cCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 11122333444445555445689999999999999999999999999998887655
No 124
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.45 E-value=3.1e-07 Score=73.95 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=67.6
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC------------------------------------Chhh
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY------------------------------------TCFH 66 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~------------------------------------~~~~ 66 (207)
+.|.+||-||.+++-..|..+...|+.+||-|.++++|.. ..++
T Consensus 117 k~PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~irNeq 196 (399)
T KOG3847|consen 117 KYPVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHIRNEQ 196 (399)
T ss_pred CccEEEEecccccchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEeeCHH
Confidence 3599999999999999999999999999999999999986 0000
Q ss_pred h------HHHHHHHHHHhCC----------------------CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEecc
Q 043205 67 G------IADLVGLIDIVAP----------------------NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 67 ~------~~~~~~~~~~l~~----------------------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~ 116 (207)
. +.....+++.+.. +..++.++|||+||+.++.....+.+ +++.|++++
T Consensus 197 v~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~-FrcaI~lD~ 273 (399)
T KOG3847|consen 197 VGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTD-FRCAIALDA 273 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccc-eeeeeeeee
Confidence 1 1112223333221 12368899999999999888877654 777777764
No 125
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.45 E-value=1e-06 Score=73.33 Aligned_cols=92 Identities=28% Similarity=0.455 Sum_probs=56.6
Q ss_pred CcEEEEECCCCCChhh--------------H----HHHHHHHHhCCCEEEEeCCCCC---------------ChhhhH--
Q 043205 24 GPVILFLHGFPELWYS--------------W----RHQITALASLGYRAVAPDLRGY---------------TCFHGI-- 68 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~--------------~----~~~~~~l~~~g~~v~~~D~~G~---------------~~~~~~-- 68 (207)
-|.||++||-++.... + ......|+++||-|+++|.+|+ +...++
T Consensus 115 ~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~ 194 (390)
T PF12715_consen 115 FPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALARN 194 (390)
T ss_dssp EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHH
T ss_pred CCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHHHH
Confidence 4799999997765422 1 2346788999999999999998 011111
Q ss_pred -------------HHHHHHHHHhCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEecc
Q 043205 69 -------------ADLVGLIDIVAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 69 -------------~~~~~~~~~l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~ 116 (207)
-|....++.|.. +.++|.++|+|+||..++.+++..+ +|++.|..+.
T Consensus 195 ~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDd-RIka~v~~~~ 258 (390)
T PF12715_consen 195 LLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDD-RIKATVANGY 258 (390)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-T-T--EEEEES-
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcch-hhHhHhhhhh
Confidence 222334555543 3568999999999999999999864 6888776543
No 126
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.44 E-value=3.1e-06 Score=62.11 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=73.6
Q ss_pred EEEEECCCCCC--hhhHHHHHHHHHhCCCEEEEeCCCCC----------------ChhhhHHHHHHHHHHhCCCCCcEEE
Q 043205 26 VILFLHGFPEL--WYSWRHQITALASLGYRAVAPDLRGY----------------TCFHGIADLVGLIDIVAPNDEKMFV 87 (207)
Q Consensus 26 ~lvllHG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G~----------------~~~~~~~~~~~~~~~l~~~~~~~~l 87 (207)
+||+-||.+.+ +.........|+..|+.|..++++-. -...+...+.++.+.+. ..+.++
T Consensus 16 tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l~--~gpLi~ 93 (213)
T COG3571 16 TILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGLA--EGPLII 93 (213)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhccc--CCceee
Confidence 89999998755 55667788899999999999998765 23345555666666666 679999
Q ss_pred EEeChhHHHHHHHHHhCCcccceEEEeccCCCCC
Q 043205 88 VGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDHF 121 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~ 121 (207)
-|+||||-++...+..--..|+++++++=|+.++
T Consensus 94 GGkSmGGR~aSmvade~~A~i~~L~clgYPfhpp 127 (213)
T COG3571 94 GGKSMGGRVASMVADELQAPIDGLVCLGYPFHPP 127 (213)
T ss_pred ccccccchHHHHHHHhhcCCcceEEEecCccCCC
Confidence 9999999999888865434499999999777654
No 127
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.43 E-value=4.4e-06 Score=62.99 Aligned_cols=93 Identities=18% Similarity=0.358 Sum_probs=65.8
Q ss_pred CcEEEEECCC-----CCChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHHHHHHhCC---CCCcEEE
Q 043205 24 GPVILFLHGF-----PELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVGLIDIVAP---NDEKMFV 87 (207)
Q Consensus 24 ~~~lvllHG~-----~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~---~~~~~~l 87 (207)
.|..|++|-- ..+......+...|.++||.++.+|+||- .-..-.+|....++.++. +...+.+
T Consensus 28 ~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp~s~~~~l 107 (210)
T COG2945 28 APIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHPDSASCWL 107 (210)
T ss_pred CceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCCCchhhhh
Confidence 6788888853 34455667778899999999999999995 112234555555555543 2333468
Q ss_pred EEeChhHHHHHHHHHhCCcccceEEEeccC
Q 043205 88 VGHDWGAFMAWFLCLFRPDRVKALVNMSVT 117 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 117 (207)
.|.|+|+.|++.+|.+.|+ ...++.+.++
T Consensus 108 ~GfSFGa~Ia~~la~r~~e-~~~~is~~p~ 136 (210)
T COG2945 108 AGFSFGAYIAMQLAMRRPE-ILVFISILPP 136 (210)
T ss_pred cccchHHHHHHHHHHhccc-ccceeeccCC
Confidence 9999999999999999876 5555555544
No 128
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=71.47 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=58.8
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhH
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGA 94 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg 94 (207)
.|+|+-|..+-- ........+ +.||.|+.+++||+ +...+..-+.-.++.++-..+.+++.|+|.||
T Consensus 245 LvIC~EGNAGFY-EvG~m~tP~-~lgYsvLGwNhPGFagSTG~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGG 322 (517)
T KOG1553|consen 245 LVICFEGNAGFY-EVGVMNTPA-QLGYSVLGWNHPGFAGSTGLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGG 322 (517)
T ss_pred EEEEecCCccce-EeeeecChH-HhCceeeccCCCCccccCCCCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCC
Confidence 555555654332 212222333 34899999999999 22222222333556666557789999999999
Q ss_pred HHHHHHHHhCCcccceEEEecc
Q 043205 95 FMAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 95 ~ia~~~a~~~p~~v~~lv~~~~ 116 (207)
.-+..+|..||+ |+++|+-++
T Consensus 323 F~~~waAs~YPd-VkavvLDAt 343 (517)
T KOG1553|consen 323 FPVAWAASNYPD-VKAVVLDAT 343 (517)
T ss_pred chHHHHhhcCCC-ceEEEeecc
Confidence 999999999997 888887653
No 129
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.37 E-value=3.1e-06 Score=69.57 Aligned_cols=96 Identities=24% Similarity=0.224 Sum_probs=65.7
Q ss_pred CcEEEEECCCC---CChhhH-HHHHHHHHhCCCEEEEeCCCCC---ChhhhHHHHHHHHHH-------hCCCCCcEEEEE
Q 043205 24 GPVILFLHGFP---ELWYSW-RHQITALASLGYRAVAPDLRGY---TCFHGIADLVGLIDI-------VAPNDEKMFVVG 89 (207)
Q Consensus 24 ~~~lvllHG~~---~~~~~~-~~~~~~l~~~g~~v~~~D~~G~---~~~~~~~~~~~~~~~-------l~~~~~~~~lvG 89 (207)
.|+||++||.+ ++.... ......+...|+.|+.+|+|-. ......+|+.+.+.. ++.+.+++.+.|
T Consensus 79 ~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~G 158 (312)
T COG0657 79 APVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAG 158 (312)
T ss_pred CcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEe
Confidence 68999999976 344444 3444555567999999999875 344444443333332 333467899999
Q ss_pred eChhHHHHHHHHHhCCc----ccceEEEeccCCC
Q 043205 90 HDWGAFMAWFLCLFRPD----RVKALVNMSVTFD 119 (207)
Q Consensus 90 hS~Gg~ia~~~a~~~p~----~v~~lv~~~~~~~ 119 (207)
+|.||.+++.++..-.+ ...+.+++.+...
T Consensus 159 dSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d 192 (312)
T COG0657 159 DSAGGHLALALALAARDRGLPLPAAQVLISPLLD 192 (312)
T ss_pred cCcccHHHHHHHHHHHhcCCCCceEEEEEecccC
Confidence 99999999998875432 4677788876544
No 130
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.37 E-value=1.1e-05 Score=68.28 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=75.4
Q ss_pred cEEEEECCCCCChhhH-HHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChh
Q 043205 25 PVILFLHGFPELWYSW-RHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWG 93 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~-~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~G 93 (207)
|+||++.-+.+..... +.+++.|.+ |+.|+..|+.-- +++++.+-+.+.+++++ .+ ++++|.|+|
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~~~~~f~ldDYi~~l~~~i~~~G--~~-v~l~GvCqg 178 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPLSAGKFDLEDYIDYLIEFIRFLG--PD-IHVIAVCQP 178 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCchhcCCCCHHHHHHHHHHHHHHhC--CC-CcEEEEchh
Confidence 7999998887665544 778899999 999999986432 77888888889999998 55 999999999
Q ss_pred HHHHHHHHHhC-----CcccceEEEeccCCCCC
Q 043205 94 AFMAWFLCLFR-----PDRVKALVNMSVTFDHF 121 (207)
Q Consensus 94 g~ia~~~a~~~-----p~~v~~lv~~~~~~~~~ 121 (207)
|..++.+++.. |.+++.++++++|....
T Consensus 179 G~~~laa~Al~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 179 AVPVLAAVALMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred hHHHHHHHHHHHhcCCCCCcceEEEEecCccCC
Confidence 99977665543 66799999999988653
No 131
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.36 E-value=5.8e-06 Score=62.97 Aligned_cols=88 Identities=16% Similarity=0.076 Sum_probs=64.1
Q ss_pred EECCCC--CChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHH
Q 043205 29 FLHGFP--ELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAW 98 (207)
Q Consensus 29 llHG~~--~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~ 98 (207)
++|..+ ++...|..+...+.. .+.++.+|.+|+ +.+.+++.+...+..... ..+++++|||+||.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~l~g~s~Gg~~a~ 79 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRG-RRDVSALPLPGFGPGEPLPASADALVEAQAEAVLRAAG-GRPFVLVGHSSGGLLAH 79 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCC-CccEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC-CCCeEEEEECHHHHHHH
Confidence 456544 677789999998877 499999999998 344455544444333321 56899999999999999
Q ss_pred HHHHh---CCcccceEEEeccCC
Q 043205 99 FLCLF---RPDRVKALVNMSVTF 118 (207)
Q Consensus 99 ~~a~~---~p~~v~~lv~~~~~~ 118 (207)
..+.+ .++.+.+++++++..
T Consensus 80 ~~a~~l~~~~~~~~~l~~~~~~~ 102 (212)
T smart00824 80 AVAARLEARGIPPAAVVLLDTYP 102 (212)
T ss_pred HHHHHHHhCCCCCcEEEEEccCC
Confidence 88875 455688898887544
No 132
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.23 E-value=2.1e-05 Score=61.62 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=70.6
Q ss_pred EEEEE-CCEEEEEEeeCC-------CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----------Chhhh
Q 043205 7 RIVKV-NGINMHVAEKGQ-------GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----------TCFHG 67 (207)
Q Consensus 7 ~~v~~-~g~~i~~~~~g~-------~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~ 67 (207)
+.+.+ +|.+|+++...+ .++||+..|++-..+.+..++.+|+.+||.|+.+|..-| ++...
T Consensus 5 hvi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms~g 84 (294)
T PF02273_consen 5 HVIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMSIG 84 (294)
T ss_dssp EEEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B-------------HHHH
T ss_pred ceeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcchHHh
Confidence 45566 578888765431 479999999999999999999999999999999998876 55556
Q ss_pred HHHHHHHHHHhCC-CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEec
Q 043205 68 IADLVGLIDIVAP-NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMS 115 (207)
Q Consensus 68 ~~~~~~~~~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~ 115 (207)
.+++..+++.+.. ...++.++.-|+.|-+|+..|.+- + +.-+|..-
T Consensus 85 ~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaV 131 (294)
T PF02273_consen 85 KASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI-N-LSFLITAV 131 (294)
T ss_dssp HHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS----SEEEEES
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc-C-cceEEEEe
Confidence 6676666665532 167899999999999999999853 2 55555443
No 133
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.21 E-value=6.1e-06 Score=68.26 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=62.6
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------C--------hhhhHHHHHHHHHHhCC-----
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------T--------CFHGIADLVGLIDIVAP----- 80 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------~--------~~~~~~~~~~~~~~l~~----- 80 (207)
.|.|++-||.+.+...+..+.+.+++.||-|..+|+||- . ..+-..|+..+++.+..
T Consensus 71 ~PlvvlshG~Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP 150 (365)
T COG4188 71 LPLVVLSHGSGSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASP 150 (365)
T ss_pred CCeEEecCCCCCCccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCc
Confidence 489999999999999999999999999999999999995 1 01223444444433311
Q ss_pred ------CCCcEEEEEeChhHHHHHHHHHhC
Q 043205 81 ------NDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 81 ------~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
+..+|.++|||+||..++..+.-.
T Consensus 151 ~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~ 180 (365)
T COG4188 151 ALAGRLDPQRVGVLGHSFGGYTAMELAGAE 180 (365)
T ss_pred ccccccCccceEEEecccccHHHHHhcccc
Confidence 256899999999999999887543
No 134
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.20 E-value=5.1e-06 Score=63.37 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=65.8
Q ss_pred CcEEEEECCCC---CChhhHHHHHHHHHhCCCEEEEeCCC----CCChhhhHHHHHHHHHHh---CCCCCcEEEEEeChh
Q 043205 24 GPVILFLHGFP---ELWYSWRHQITALASLGYRAVAPDLR----GYTCFHGIADLVGLIDIV---APNDEKMFVVGHDWG 93 (207)
Q Consensus 24 ~~~lvllHG~~---~~~~~~~~~~~~l~~~g~~v~~~D~~----G~~~~~~~~~~~~~~~~l---~~~~~~~~lvGhS~G 93 (207)
.|.++|+||.- ++-......+..+.++||+|..+++- ++++.+...++...++.+ -++.+.+.+-|||.|
T Consensus 67 ~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q~htL~qt~~~~~~gv~filk~~~n~k~l~~gGHSaG 146 (270)
T KOG4627|consen 67 AKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQVHTLEQTMTQFTHGVNFILKYTENTKVLTFGGHSAG 146 (270)
T ss_pred ccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcccccHHHHHHHHHHHHHHHHHhcccceeEEEcccchH
Confidence 68999999962 44444455666777889999887642 234555444444433332 122456778899999
Q ss_pred HHHHHHHHHh-CCcccceEEEeccCCC
Q 043205 94 AFMAWFLCLF-RPDRVKALVNMSVTFD 119 (207)
Q Consensus 94 g~ia~~~a~~-~p~~v~~lv~~~~~~~ 119 (207)
+.+++.+..+ +..+|.+++++++.+.
T Consensus 147 AHLa~qav~R~r~prI~gl~l~~GvY~ 173 (270)
T KOG4627|consen 147 AHLAAQAVMRQRSPRIWGLILLCGVYD 173 (270)
T ss_pred HHHHHHHHHHhcCchHHHHHHHhhHhh
Confidence 9999988776 4458999999988765
No 135
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.20 E-value=2.3e-05 Score=63.60 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=64.8
Q ss_pred CcEEEEECCCCCCh---hhHHHHHHHHHhCCCEEEEeCCCC----C---ChhhhHHHHHHHHHHhCC------CCCcEEE
Q 043205 24 GPVILFLHGFPELW---YSWRHQITALASLGYRAVAPDLRG----Y---TCFHGIADLVGLIDIVAP------NDEKMFV 87 (207)
Q Consensus 24 ~~~lvllHG~~~~~---~~~~~~~~~l~~~g~~v~~~D~~G----~---~~~~~~~~~~~~~~~l~~------~~~~~~l 87 (207)
...||||.|.+..- .....++..|...+|.++-+-++. + +++.-++|+.++++.+.. ..++|+|
T Consensus 33 ~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVL 112 (303)
T PF08538_consen 33 PNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLDRDVEEIAQLVEYLRSEKGGHFGREKIVL 112 (303)
T ss_dssp SSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HHHHHHHHHHHHHHHHHHS------S-EEE
T ss_pred CcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhhhHHHHHHHHHHHHHHhhccccCCccEEE
Confidence 45899999987643 446778888877799999997766 3 777778888887776542 1568999
Q ss_pred EEeChhHHHHHHHHHhCC-----cccceEEEeccCCCC
Q 043205 88 VGHDWGAFMAWFLCLFRP-----DRVKALVNMSVTFDH 120 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~~p-----~~v~~lv~~~~~~~~ 120 (207)
+|||-|+.-+++++.+.. ..|+++|+-+|....
T Consensus 113 mGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDR 150 (303)
T PF08538_consen 113 MGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDR 150 (303)
T ss_dssp EEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---T
T ss_pred EecCCCcHHHHHHHhccCccccccceEEEEEeCCCCCh
Confidence 999999999999987642 569999998875543
No 136
>PLN02606 palmitoyl-protein thioesterase
Probab=98.19 E-value=1.7e-05 Score=64.31 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=64.0
Q ss_pred CcEEEEECCCC--CChhhHHHHHHHHHhC-CCEEEEeCCC-CC--Ch-hhhHHHHHHHHHHhCC---CCCcEEEEEeChh
Q 043205 24 GPVILFLHGFP--ELWYSWRHQITALASL-GYRAVAPDLR-GY--TC-FHGIADLVGLIDIVAP---NDEKMFVVGHDWG 93 (207)
Q Consensus 24 ~~~lvllHG~~--~~~~~~~~~~~~l~~~-g~~v~~~D~~-G~--~~-~~~~~~~~~~~~~l~~---~~~~~~lvGhS~G 93 (207)
..|||+.||++ .+......+...+.+. +..+.++-.= +. +. ..+-+.+..+.+++.. ..+-+.++|+|.|
T Consensus 26 ~~PvViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~ig~~~~~s~~~~~~~Qv~~vce~l~~~~~L~~G~naIGfSQG 105 (306)
T PLN02606 26 SVPFVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVEIGNGVQDSLFMPLRQQASIACEKIKQMKELSEGYNIVAESQG 105 (306)
T ss_pred CCCEEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEEECCCcccccccCHHHHHHHHHHHHhcchhhcCceEEEEEcch
Confidence 46899999998 4555777777777532 4543333210 11 11 2233444444444432 1346999999999
Q ss_pred HHHHHHHHHhCCc--ccceEEEeccCCCC
Q 043205 94 AFMAWFLCLFRPD--RVKALVNMSVTFDH 120 (207)
Q Consensus 94 g~ia~~~a~~~p~--~v~~lv~~~~~~~~ 120 (207)
|.++..++.+.|+ .|+.+|.++++...
T Consensus 106 glflRa~ierc~~~p~V~nlISlggph~G 134 (306)
T PLN02606 106 NLVARGLIEFCDNAPPVINYVSLGGPHAG 134 (306)
T ss_pred hHHHHHHHHHCCCCCCcceEEEecCCcCC
Confidence 9999999999876 59999999987753
No 137
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.18 E-value=1.7e-05 Score=67.40 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhCCCE----EE--EeCCCCC--ChhhhHHHHHHHHHHhCC-CCCcEEEEEeChhHHHHHHHHHhCC----
Q 043205 39 SWRHQITALASLGYR----AV--APDLRGY--TCFHGIADLVGLIDIVAP-NDEKMFVVGHDWGAFMAWFLCLFRP---- 105 (207)
Q Consensus 39 ~~~~~~~~l~~~g~~----v~--~~D~~G~--~~~~~~~~~~~~~~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~~p---- 105 (207)
.|..+++.|.+.||. +. -+|+|-- ..+.+...+..+++..-. ..++++|+||||||.++..+....+
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~~~~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W 145 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPAERDEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEW 145 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchhhHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhh
Confidence 799999999987774 22 2677763 233666777777776532 3679999999999999999887764
Q ss_pred --cccceEEEeccCCCC
Q 043205 106 --DRVKALVNMSVTFDH 120 (207)
Q Consensus 106 --~~v~~lv~~~~~~~~ 120 (207)
+.|+++|.+++|+..
T Consensus 146 ~~~~i~~~i~i~~p~~G 162 (389)
T PF02450_consen 146 KDKYIKRFISIGTPFGG 162 (389)
T ss_pred HHhhhhEEEEeCCCCCC
Confidence 259999999998864
No 138
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.16 E-value=7.5e-06 Score=64.92 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=38.8
Q ss_pred HHHHHHHHHHh-CCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 68 IADLVGLIDIV-APNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 68 ~~~~~~~~~~l-~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.+++...+++- ....++..+.|+||||..++.++.++|+.+.+++++++.+.
T Consensus 99 ~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~ 151 (251)
T PF00756_consen 99 TEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALD 151 (251)
T ss_dssp HTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESE
T ss_pred hccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccc
Confidence 34444454442 21122378999999999999999999999999999997644
No 139
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.15 E-value=5.5e-05 Score=64.66 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=62.3
Q ss_pred CcEEEEECCCCC--ChhhHHHHHHHHHhCC----CEEEEeCCCCC--------C----hhhhHHHHHHHHHHh---CCCC
Q 043205 24 GPVILFLHGFPE--LWYSWRHQITALASLG----YRAVAPDLRGY--------T----CFHGIADLVGLIDIV---APND 82 (207)
Q Consensus 24 ~~~lvllHG~~~--~~~~~~~~~~~l~~~g----~~v~~~D~~G~--------~----~~~~~~~~~~~~~~l---~~~~ 82 (207)
.|+|+++||... .... ...+..|.+.| ..++.+|..+. . ...+.+++.-.+++. ..+.
T Consensus 209 ~PvlyllDG~~w~~~~~~-~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~~~~d~ 287 (411)
T PRK10439 209 RPLAILLDGQFWAESMPV-WPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAPFSDDA 287 (411)
T ss_pred CCEEEEEECHHhhhcCCH-HHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 589999999542 1122 23344555544 34677775321 1 122334555555543 1135
Q ss_pred CcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 83 EKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 83 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
++.++.|+||||..++.++.++|+++.+++++++.+
T Consensus 288 ~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 288 DRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred cceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 678999999999999999999999999999999876
No 140
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.15 E-value=3e-05 Score=62.36 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=37.3
Q ss_pred HhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 77 IVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 77 ~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+...+..+++++|.|+||+-++.++.++|+.+.+.+.+++...
T Consensus 263 ~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 263 TYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred ccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 3333567899999999999999999999999999999997654
No 141
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.14 E-value=0.0001 Score=60.50 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=78.6
Q ss_pred CceEEEEECCEEEEEEeeC-----CCcEEEEECCCCCChhhH-------HHHHHHHHhCCCEEEEeCCCCC-------Ch
Q 043205 4 IQHRIVKVNGINMHVAEKG-----QGPVILFLHGFPELWYSW-------RHQITALASLGYRAVAPDLRGY-------TC 64 (207)
Q Consensus 4 ~~~~~v~~~g~~i~~~~~g-----~~~~lvllHG~~~~~~~~-------~~~~~~l~~~g~~v~~~D~~G~-------~~ 64 (207)
+.+-.++.|+..|....-. +...+|++-|.++.-+.. ..+.....+.+.+|+.+++||. +.
T Consensus 112 ~kRv~Iq~D~~~IDt~~I~~~~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~s~ 191 (365)
T PF05677_consen 112 VKRVPIQYDGVKIDTMAIHQPEAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPPSR 191 (365)
T ss_pred eeeEEEeeCCEEEEEEEeeCCCCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCCCH
Confidence 4555677788777654322 357899999987665541 1233334445899999999998 77
Q ss_pred hhhHHHHHHHHHHhCC-----CCCcEEEEEeChhHHHHHHHHHhCC----cccceEEEeccCC
Q 043205 65 FHGIADLVGLIDIVAP-----NDEKMFVVGHDWGAFMAWFLCLFRP----DRVKALVNMSVTF 118 (207)
Q Consensus 65 ~~~~~~~~~~~~~l~~-----~~~~~~lvGhS~Gg~ia~~~a~~~p----~~v~~lv~~~~~~ 118 (207)
+++++|-...++.|.. ..+.+++.|||+||.++..++.++. +.++-+++-+-.+
T Consensus 192 ~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRsf 254 (365)
T PF05677_consen 192 KDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRSF 254 (365)
T ss_pred HHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCCc
Confidence 8888888887777742 2468999999999999888666543 2355455554333
No 142
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.6e-05 Score=70.46 Aligned_cols=112 Identities=16% Similarity=0.273 Sum_probs=76.9
Q ss_pred ceEEEEECCEEEEEEeeC--------CCcEEEEECCCCCCh-------hhHHHHHHHHHhCCCEEEEeCCCCC-------
Q 043205 5 QHRIVKVNGINMHVAEKG--------QGPVILFLHGFPELW-------YSWRHQITALASLGYRAVAPDLRGY------- 62 (207)
Q Consensus 5 ~~~~v~~~g~~i~~~~~g--------~~~~lvllHG~~~~~-------~~~~~~~~~l~~~g~~v~~~D~~G~------- 62 (207)
.-..+..+|...++...- +-|.+|.+||.+++. -+|... .+...|+.|+.+|.||-
T Consensus 499 ~~~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~--~~s~~g~~v~~vd~RGs~~~G~~~ 576 (755)
T KOG2100|consen 499 EFGKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEV--VVSSRGFAVLQVDGRGSGGYGWDF 576 (755)
T ss_pred eeEEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHH--hhccCCeEEEEEcCCCcCCcchhH
Confidence 344566788888776432 248999999999732 234332 45567999999999996
Q ss_pred -----------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceE-EEeccCC
Q 043205 63 -----------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKAL-VNMSVTF 118 (207)
Q Consensus 63 -----------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l-v~~~~~~ 118 (207)
..++...-+..+++..-.+.+++.+.|+|.||+++..++..+|+.+.++ +.++|..
T Consensus 577 ~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVt 644 (755)
T KOG2100|consen 577 RSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVT 644 (755)
T ss_pred HHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEeccee
Confidence 2233333344444443335779999999999999999999998555544 8887643
No 143
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=1.9e-05 Score=70.68 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=65.6
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHh----------------CCCEEEEeCCCCC-------ChhhhHHHHHHHHHHh--
Q 043205 24 GPVILFLHGFPELWYSWRHQITALAS----------------LGYRAVAPDLRGY-------TCFHGIADLVGLIDIV-- 78 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~----------------~g~~v~~~D~~G~-------~~~~~~~~~~~~~~~l-- 78 (207)
|-||+||+|..|+....+.++..... ..++-+++|.-+- +..+.++-+.+.+..+
T Consensus 89 GIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe~tAm~G~~l~dQtEYV~dAIk~ILs 168 (973)
T KOG3724|consen 89 GIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEEFTAMHGHILLDQTEYVNDAIKYILS 168 (973)
T ss_pred CceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccchhhhhccHhHHHHHHHHHHHHHHHHH
Confidence 45999999999999888887655442 1356667776553 5555555554444432
Q ss_pred --CC--C-----CCcEEEEEeChhHHHHHHHHHh---CCcccceEEEeccCCCC
Q 043205 79 --AP--N-----DEKMFVVGHDWGAFMAWFLCLF---RPDRVKALVNMSVTFDH 120 (207)
Q Consensus 79 --~~--~-----~~~~~lvGhS~Gg~ia~~~a~~---~p~~v~~lv~~~~~~~~ 120 (207)
+. + ...++++||||||++|...+.. .++.|..++..++|...
T Consensus 169 lYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH~a 222 (973)
T KOG3724|consen 169 LYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPHAA 222 (973)
T ss_pred HhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcccC
Confidence 21 1 2359999999999999776643 34567888888877653
No 144
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.6e-06 Score=71.32 Aligned_cols=91 Identities=22% Similarity=0.267 Sum_probs=69.4
Q ss_pred CcEEEEECCCCCCh-----hhHHHH--HHHHHhCCCEEEEeCCCCC------------------ChhhhHHHHHHHHHHh
Q 043205 24 GPVILFLHGFPELW-----YSWRHQ--ITALASLGYRAVAPDLRGY------------------TCFHGIADLVGLIDIV 78 (207)
Q Consensus 24 ~~~lvllHG~~~~~-----~~~~~~--~~~l~~~g~~v~~~D~~G~------------------~~~~~~~~~~~~~~~l 78 (207)
.|+++++-|.++-. ..|... ...|+..||-|+.+|-||. .+++.++-+.-+.++.
T Consensus 642 Yptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~ 721 (867)
T KOG2281|consen 642 YPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQT 721 (867)
T ss_pred CceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhc
Confidence 58999999998643 222222 3467788999999999996 4566666677777776
Q ss_pred CC-CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEe
Q 043205 79 AP-NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNM 114 (207)
Q Consensus 79 ~~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~ 114 (207)
+- +.+++.+-|+|.||++++....++|+-++..|.-
T Consensus 722 gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAG 758 (867)
T KOG2281|consen 722 GFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAG 758 (867)
T ss_pred CcccchheeEeccccccHHHHHHhhcCcceeeEEecc
Confidence 53 4678999999999999999999999866655543
No 145
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.07 E-value=1.1e-05 Score=70.40 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=62.0
Q ss_pred CcEEEEECCCC---CChhhHHHHHHHHHhC-C-CEEEEeCCC-CC------------------ChhhhHHHHHHHHHHhC
Q 043205 24 GPVILFLHGFP---ELWYSWRHQITALASL-G-YRAVAPDLR-GY------------------TCFHGIADLVGLIDIVA 79 (207)
Q Consensus 24 ~~~lvllHG~~---~~~~~~~~~~~~l~~~-g-~~v~~~D~~-G~------------------~~~~~~~~~~~~~~~l~ 79 (207)
.|++|+|||.+ ++...+ ....+... + +.|+.+++| |. +.....+++.+-++..+
T Consensus 95 ~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~fg 172 (493)
T cd00312 95 LPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAFG 172 (493)
T ss_pred CCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhC
Confidence 58999999964 222221 12333333 3 889999988 32 11222344445555556
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHh--CCcccceEEEeccCCC
Q 043205 80 PNDEKMFVVGHDWGAFMAWFLCLF--RPDRVKALVNMSVTFD 119 (207)
Q Consensus 80 ~~~~~~~lvGhS~Gg~ia~~~a~~--~p~~v~~lv~~~~~~~ 119 (207)
.+.+++.++|+|.||..+..++.. .+..++++|+++++..
T Consensus 173 gd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 173 GDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred CCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 567799999999999999888765 3456889998887654
No 146
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.04 E-value=2.2e-05 Score=59.94 Aligned_cols=94 Identities=18% Similarity=0.306 Sum_probs=70.1
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------------------------ChhhhHHHHHHHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------------------------TCFHGIADLVGLI 75 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------------------------~~~~~~~~~~~~~ 75 (207)
..+||++||.++++..|..+...+.-.+..-++|..|-. +....++.+..++
T Consensus 3 ~atIi~LHglGDsg~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~Li 82 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIANLI 82 (206)
T ss_pred eEEEEEEecCCCCCccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHHHH
Confidence 358999999999999998888887666677777755443 3344455566666
Q ss_pred HHhCC---CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccC
Q 043205 76 DIVAP---NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVT 117 (207)
Q Consensus 76 ~~l~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 117 (207)
+.... ...++.+-|.|+||.++++.+..+|..+.+.+..++-
T Consensus 83 ~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~ 127 (206)
T KOG2112|consen 83 DNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGF 127 (206)
T ss_pred HHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccc
Confidence 55432 2457899999999999999999998877777766543
No 147
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.01 E-value=4.6e-05 Score=61.26 Aligned_cols=97 Identities=9% Similarity=0.056 Sum_probs=52.4
Q ss_pred CcEEEEECCCCCCh---hhHHHHHHHHHhC--CCEEEEeCCCCC-----------ChhhhHHHHHHHHHHhCCCCCcEEE
Q 043205 24 GPVILFLHGFPELW---YSWRHQITALASL--GYRAVAPDLRGY-----------TCFHGIADLVGLIDIVAPNDEKMFV 87 (207)
Q Consensus 24 ~~~lvllHG~~~~~---~~~~~~~~~l~~~--g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~~~~~~~l 87 (207)
..|||+.||++++. ..+..+...+.+. |--|..++.-.- .+....+.+.+.++....-.+-+++
T Consensus 5 ~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~~G~~~ 84 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGNDPSEDVENSFFGNVNDQVEQVCEQLANDPELANGFNA 84 (279)
T ss_dssp S--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSSSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGTT-EEE
T ss_pred CCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECCCcchhhhhhHHHHHHHHHHHHHHHHhhChhhhcceee
Confidence 35999999999754 2455555544442 566777766432 2222333334444332211357999
Q ss_pred EEeChhHHHHHHHHHhCCc-ccceEEEeccCCCC
Q 043205 88 VGHDWGAFMAWFLCLFRPD-RVKALVNMSVTFDH 120 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~~p~-~v~~lv~~~~~~~~ 120 (207)
+|+|.||.++..++.+.|+ .|+.+|.++++...
T Consensus 85 IGfSQGgl~lRa~vq~c~~~~V~nlISlggph~G 118 (279)
T PF02089_consen 85 IGFSQGGLFLRAYVQRCNDPPVHNLISLGGPHMG 118 (279)
T ss_dssp EEETCHHHHHHHHHHH-TSS-EEEEEEES--TT-
T ss_pred eeeccccHHHHHHHHHCCCCCceeEEEecCcccc
Confidence 9999999999999998764 69999999987653
No 148
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.98 E-value=0.00011 Score=63.73 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=73.7
Q ss_pred EEEEEC----CEEEEEEeeC------CCcEEEEECCCCCChhhHHHHHH-----------HHHh------CCCEEEEeCC
Q 043205 7 RIVKVN----GINMHVAEKG------QGPVILFLHGFPELWYSWRHQIT-----------ALAS------LGYRAVAPDL 59 (207)
Q Consensus 7 ~~v~~~----g~~i~~~~~g------~~~~lvllHG~~~~~~~~~~~~~-----------~l~~------~g~~v~~~D~ 59 (207)
.++.++ +..++|.-.. +.|++++++|.++.+..+-.+.+ .+.. +..+++.+|.
T Consensus 50 Gy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iDq 129 (462)
T PTZ00472 50 GYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVDQ 129 (462)
T ss_pred EEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEeC
Confidence 467774 3567665332 36999999999998876533321 1111 1267999998
Q ss_pred C---CC----------ChhhhHHHHHHHHHHhC----C-CCCcEEEEEeChhHHHHHHHHHhC----------CcccceE
Q 043205 60 R---GY----------TCFHGIADLVGLIDIVA----P-NDEKMFVVGHDWGAFMAWFLCLFR----------PDRVKAL 111 (207)
Q Consensus 60 ~---G~----------~~~~~~~~~~~~~~~l~----~-~~~~~~lvGhS~Gg~ia~~~a~~~----------p~~v~~l 111 (207)
| |+ +.++.++|+.++++.+- . ...+++|+|||+||..+..+|.+- +-.++++
T Consensus 130 P~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi 209 (462)
T PTZ00472 130 PAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGL 209 (462)
T ss_pred CCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEE
Confidence 8 55 33567888888777531 1 157899999999999988887642 1136677
Q ss_pred EEeccCC
Q 043205 112 VNMSVTF 118 (207)
Q Consensus 112 v~~~~~~ 118 (207)
++-++-.
T Consensus 210 ~IGNg~~ 216 (462)
T PTZ00472 210 AVGNGLT 216 (462)
T ss_pred EEecccc
Confidence 7666543
No 149
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=97.95 E-value=0.00018 Score=61.73 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=72.3
Q ss_pred CEEEEEEeeC----CCcEEEEECCCC---CChhhHHHHHHHHHhCC-CEEEEeCCCC----C------------------
Q 043205 13 GINMHVAEKG----QGPVILFLHGFP---ELWYSWRHQITALASLG-YRAVAPDLRG----Y------------------ 62 (207)
Q Consensus 13 g~~i~~~~~g----~~~~lvllHG~~---~~~~~~~~~~~~l~~~g-~~v~~~D~~G----~------------------ 62 (207)
...++++... +.|++|+|||.+ ++...-..--..|+++| +-|+.+++|= |
T Consensus 79 CL~LNIwaP~~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl 158 (491)
T COG2272 79 CLYLNIWAPEVPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGL 158 (491)
T ss_pred ceeEEeeccCCCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccH
Confidence 3445555443 259999999963 33333223345677776 8888887653 2
Q ss_pred -ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh--CCcccceEEEeccCCC
Q 043205 63 -TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF--RPDRVKALVNMSVTFD 119 (207)
Q Consensus 63 -~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~--~p~~v~~lv~~~~~~~ 119 (207)
+.-.-.+++.+-|++++.+.++|.|+|+|.||+.++.+.+. ....++++|+.+++..
T Consensus 159 ~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 159 LDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 11123466778888888778899999999999998877653 2246788888887775
No 150
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.95 E-value=7.3e-05 Score=64.35 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=64.7
Q ss_pred CcEEEEECCCCCChhhH--HHHHHHHHh-CCCEEEEeCCCCC-----------------ChhhhHHHHHHHHHHhCC---
Q 043205 24 GPVILFLHGFPELWYSW--RHQITALAS-LGYRAVAPDLRGY-----------------TCFHGIADLVGLIDIVAP--- 80 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~--~~~~~~l~~-~g~~v~~~D~~G~-----------------~~~~~~~~~~~~~~~l~~--- 80 (207)
+|++|++-|-+.-...| ..+...|++ .|-.++.+++|-| |.++...|+..+++++..
T Consensus 29 gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~ 108 (434)
T PF05577_consen 29 GPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYN 108 (434)
T ss_dssp SEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhc
Confidence 56666665544332222 223334443 3778999999998 777788888888877652
Q ss_pred --CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCCCCC
Q 043205 81 --NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDHFDP 123 (207)
Q Consensus 81 --~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~~~ 123 (207)
...|++++|-|.||+++..+-.+||+.|.+.+.-++|......
T Consensus 109 ~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a~~d 153 (434)
T PF05577_consen 109 TAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQAKVD 153 (434)
T ss_dssp TGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCHCCT
T ss_pred CCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeeeecc
Confidence 2458999999999999999999999999999998888765433
No 151
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=97.94 E-value=0.00041 Score=57.61 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=68.7
Q ss_pred CcEEEEECCCCC-----ChhhHHHHHHHHH-hCCCEEEEeCCCCC-------ChhhhHHHHHHHHH----HhCCCCCcEE
Q 043205 24 GPVILFLHGFPE-----LWYSWRHQITALA-SLGYRAVAPDLRGY-------TCFHGIADLVGLID----IVAPNDEKMF 86 (207)
Q Consensus 24 ~~~lvllHG~~~-----~~~~~~~~~~~l~-~~g~~v~~~D~~G~-------~~~~~~~~~~~~~~----~l~~~~~~~~ 86 (207)
.|.||++||.|. +...+..+...++ +.+..|+.+|+|=- ..++..+.+.-+.+ ..+.+.++++
T Consensus 90 ~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~ 169 (336)
T KOG1515|consen 90 LPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVF 169 (336)
T ss_pred ceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEE
Confidence 589999999762 3556777777774 44788999998875 33333333333333 2333467899
Q ss_pred EEEeChhHHHHHHHHHhC------CcccceEEEeccCCCCC
Q 043205 87 VVGHDWGAFMAWFLCLFR------PDRVKALVNMSVTFDHF 121 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~------p~~v~~lv~~~~~~~~~ 121 (207)
+.|-|.||.+|..+|.+. +-++++.|++-|.+...
T Consensus 170 l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~ 210 (336)
T KOG1515|consen 170 LAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGT 210 (336)
T ss_pred EEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCC
Confidence 999999999999887652 34789999998777653
No 152
>PLN02633 palmitoyl protein thioesterase family protein
Probab=97.93 E-value=0.00012 Score=59.60 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=61.8
Q ss_pred CcEEEEECCCCCChh--hHHHHHHHHHhC-CCEEEEeCCC-----CC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChh
Q 043205 24 GPVILFLHGFPELWY--SWRHQITALASL-GYRAVAPDLR-----GY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWG 93 (207)
Q Consensus 24 ~~~lvllHG~~~~~~--~~~~~~~~l~~~-g~~v~~~D~~-----G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~G 93 (207)
..|+|+.||+|++.. ....+.+.+.+. |..+.++..= |+ .+.+.++.+.+.+.......+-++++|+|.|
T Consensus 25 ~~P~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~~~~~s~~~~~~~Qve~vce~l~~~~~l~~G~naIGfSQG 104 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGNGVGDSWLMPLTQQAEIACEKVKQMKELSQGYNIVGRSQG 104 (314)
T ss_pred CCCeEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEECCCccccceeCHHHHHHHHHHHHhhchhhhCcEEEEEEccc
Confidence 468999999987654 334444444332 4444444321 22 3333444443333332211346999999999
Q ss_pred HHHHHHHHHhCCc--ccceEEEeccCCC
Q 043205 94 AFMAWFLCLFRPD--RVKALVNMSVTFD 119 (207)
Q Consensus 94 g~ia~~~a~~~p~--~v~~lv~~~~~~~ 119 (207)
|.++..++.+.|+ .|+.+|.++++..
T Consensus 105 GlflRa~ierc~~~p~V~nlISlggph~ 132 (314)
T PLN02633 105 NLVARGLIEFCDGGPPVYNYISLAGPHA 132 (314)
T ss_pred hHHHHHHHHHCCCCCCcceEEEecCCCC
Confidence 9999999999876 5999999998765
No 153
>COG3150 Predicted esterase [General function prediction only]
Probab=97.90 E-value=9.1e-05 Score=54.75 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=61.6
Q ss_pred EEEECCCCCChhhHHHH--HHHHHhC--CCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 27 ILFLHGFPELWYSWRHQ--ITALASL--GYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 27 lvllHG~~~~~~~~~~~--~~~l~~~--g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
|+.|||+..|..+.... ...+.+. .....++-+|- .+...++.+.+++.+++ .+...++|.|+||+.+.+++.
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~p~l~h-~p~~a~~ele~~i~~~~--~~~p~ivGssLGGY~At~l~~ 78 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYSTPHLPH-DPQQALKELEKAVQELG--DESPLIVGSSLGGYYATWLGF 78 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhccccceeeecCCCCC-CHHHHHHHHHHHHHHcC--CCCceEEeecchHHHHHHHHH
Confidence 78999998876665433 2344332 12333343333 78888899999999998 567999999999999999999
Q ss_pred hCCcccceEEEeccCCC
Q 043205 103 FRPDRVKALVNMSVTFD 119 (207)
Q Consensus 103 ~~p~~v~~lv~~~~~~~ 119 (207)
++. +++++ ++|...
T Consensus 79 ~~G--irav~-~NPav~ 92 (191)
T COG3150 79 LCG--IRAVV-FNPAVR 92 (191)
T ss_pred HhC--Chhhh-cCCCcC
Confidence 886 55544 455443
No 154
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.87 E-value=0.00012 Score=57.05 Aligned_cols=94 Identities=26% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHH----hCCCEEEEeCCCCC------------------------------------
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALA----SLGYRAVAPDLRGY------------------------------------ 62 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~----~~g~~v~~~D~~G~------------------------------------ 62 (207)
+++-||||||++.++..++.....|. +.++..+.+|-|--
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 46789999999999999877655443 32577766654321
Q ss_pred --ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC--------CcccceEEEeccCCC
Q 043205 63 --TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR--------PDRVKALVNMSVTFD 119 (207)
Q Consensus 63 --~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~--------p~~v~~lv~~~~~~~ 119 (207)
.+++..+.+.+.+++.+ .-..++|+|.||.+|..++... ...++-+|++++..+
T Consensus 83 ~~~~~~sl~~l~~~i~~~G---PfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p 146 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENG---PFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPP 146 (212)
T ss_dssp G---HHHHHHHHHHHHHH------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----
T ss_pred ccCHHHHHHHHHHHHHhcC---CeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCC
Confidence 12223334444444444 2355999999999999887532 124677888876654
No 155
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.85 E-value=1.9e-05 Score=60.50 Aligned_cols=97 Identities=22% Similarity=0.290 Sum_probs=67.1
Q ss_pred CcEEEEECCCCCChhhHHHH---HHHHHhCCCEEEEeC--CCCC---------------------ChhhhHH-------H
Q 043205 24 GPVILFLHGFPELWYSWRHQ---ITALASLGYRAVAPD--LRGY---------------------TCFHGIA-------D 70 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~---~~~l~~~g~~v~~~D--~~G~---------------------~~~~~~~-------~ 70 (207)
-|+++++.|.+++...+..- ....+++|..|+.|| .||- +.+.+++ -
T Consensus 44 ~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv 123 (283)
T KOG3101|consen 44 CPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYV 123 (283)
T ss_pred CceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHHH
Confidence 38999999999998876332 344556789999998 5663 2222222 1
Q ss_pred HHHHHHHhCC-----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 71 LVGLIDIVAP-----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 71 ~~~~~~~l~~-----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+.++.+.+.+ +..++.+.||||||.-|+.++.+.|.+.+++-..+|...|
T Consensus 124 ~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP 178 (283)
T KOG3101|consen 124 VKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNP 178 (283)
T ss_pred HHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCc
Confidence 2344444432 3457889999999999999999999888877766655444
No 156
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.80 E-value=7.2e-05 Score=62.90 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=73.7
Q ss_pred CcEEEEECCCCCChhhH-----HHHHHHHHhCCCEEEEeCCCCC-------ChhhhH-HHHHH----HHHHhCCCCCcEE
Q 043205 24 GPVILFLHGFPELWYSW-----RHQITALASLGYRAVAPDLRGY-------TCFHGI-ADLVG----LIDIVAPNDEKMF 86 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~-------~~~~~~-~~~~~----~~~~l~~~~~~~~ 86 (207)
++|++++|-+-...+.| ..++..|.++|..|+.+|+++= +.+++. +.+.+ +.+..+ .+++.
T Consensus 107 ~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~aid~v~~itg--~~~In 184 (445)
T COG3243 107 KRPLLIVPPWINKFYILDLSPEKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDITG--QKDIN 184 (445)
T ss_pred CCceEeeccccCceeEEeCCCCccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHHHHHHHHHHHHHHHhC--ccccc
Confidence 57999999987776655 4578889999999999998874 455554 34433 333344 68999
Q ss_pred EEEeChhHHHHHHHHHhCCcc-cceEEEeccCCCC
Q 043205 87 VVGHDWGAFMAWFLCLFRPDR-VKALVNMSVTFDH 120 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~p~~-v~~lv~~~~~~~~ 120 (207)
++|+|.||+++..+++.++.+ |+.++++.++...
T Consensus 185 liGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 185 LIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred eeeEecchHHHHHHHHhhhhcccccceeeecchhh
Confidence 999999999999998888876 9999988877654
No 157
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00064 Score=53.99 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred cEEEEECCCCCChhh--HHHHHHHHHhC-CCEEEEeCCCCC----ChhhhHHHHHHHHHHhCC---CCCcEEEEEeChhH
Q 043205 25 PVILFLHGFPELWYS--WRHQITALASL-GYRAVAPDLRGY----TCFHGIADLVGLIDIVAP---NDEKMFVVGHDWGA 94 (207)
Q Consensus 25 ~~lvllHG~~~~~~~--~~~~~~~l~~~-g~~v~~~D~~G~----~~~~~~~~~~~~~~~l~~---~~~~~~lvGhS~Gg 94 (207)
.|+|++||++++..+ ...+.+.+.+. |..++++|.=.- ....+-+.+..+.++++. ..+-+.++|.|.||
T Consensus 24 ~P~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~g~~~s~l~pl~~Qv~~~ce~v~~m~~lsqGynivg~SQGg 103 (296)
T KOG2541|consen 24 VPVIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGDGIKDSSLMPLWEQVDVACEKVKQMPELSQGYNIVGYSQGG 103 (296)
T ss_pred CCEEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEecCCcchhhhccHHHHHHHHHHHHhcchhccCceEEEEEcccc
Confidence 589999999987766 67777777664 677888775321 222233333333444332 24679999999999
Q ss_pred HHHHHHHHhCCc-ccceEEEeccCCCC
Q 043205 95 FMAWFLCLFRPD-RVKALVNMSVTFDH 120 (207)
Q Consensus 95 ~ia~~~a~~~p~-~v~~lv~~~~~~~~ 120 (207)
.++..++..-++ .|+.+|.+++|...
T Consensus 104 lv~Raliq~cd~ppV~n~ISL~gPhaG 130 (296)
T KOG2541|consen 104 LVARALIQFCDNPPVKNFISLGGPHAG 130 (296)
T ss_pred HHHHHHHHhCCCCCcceeEeccCCcCC
Confidence 999888876432 48999999988754
No 158
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.77 E-value=0.0016 Score=53.76 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=68.7
Q ss_pred CcEEEEECCCCCCh---hhHHHHHHHHHhCCCEEEEeCCCCC-----------------------Ch-------------
Q 043205 24 GPVILFLHGFPELW---YSWRHQITALASLGYRAVAPDLRGY-----------------------TC------------- 64 (207)
Q Consensus 24 ~~~lvllHG~~~~~---~~~~~~~~~l~~~g~~v~~~D~~G~-----------------------~~------------- 64 (207)
.-.+|++||.+.+. ..-..+-..|.+.||.++.+.+|.- +.
T Consensus 87 ~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (310)
T PF12048_consen 87 QGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEA 166 (310)
T ss_pred ceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHh
Confidence 34999999998775 3446666788889999999888871 00
Q ss_pred -------hhhHHHHHHHHHHhCCC-CCcEEEEEeChhHHHHHHHHHhCCc-ccceEEEeccCCCC
Q 043205 65 -------FHGIADLVGLIDIVAPN-DEKMFVVGHDWGAFMAWFLCLFRPD-RVKALVNMSVTFDH 120 (207)
Q Consensus 65 -------~~~~~~~~~~~~~l~~~-~~~~~lvGhS~Gg~ia~~~a~~~p~-~v~~lv~~~~~~~~ 120 (207)
..+..-+..++..+... ..+++++||+.|+..+..+....+. .++++|++++-.+.
T Consensus 167 ~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~ 231 (310)
T PF12048_consen 167 EAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQ 231 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCc
Confidence 12223344444444433 3459999999999999999887654 58999999965543
No 159
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.75 E-value=0.00011 Score=56.93 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=76.4
Q ss_pred EEEECCEEEEEEeeCC-CcEEEEECCC-CCChhhHHHHHHHHHhCCCEEEEeC-CCCC------------------Chhh
Q 043205 8 IVKVNGINMHVAEKGQ-GPVILFLHGF-PELWYSWRHQITALASLGYRAVAPD-LRGY------------------TCFH 66 (207)
Q Consensus 8 ~v~~~g~~i~~~~~g~-~~~lvllHG~-~~~~~~~~~~~~~l~~~g~~v~~~D-~~G~------------------~~~~ 66 (207)
..+++|.+-.+..... +..||+|-.+ |.+...-+..+..++.+||.|++|| ++|- +.+.
T Consensus 22 ~~~v~gldaYv~gs~~~~~~li~i~DvfG~~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~ 101 (242)
T KOG3043|consen 22 EEEVGGLDAYVVGSTSSKKVLIVIQDVFGFQFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPK 101 (242)
T ss_pred eEeecCeeEEEecCCCCCeEEEEEEeeeccccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCccc
Confidence 3455555533322222 3466666664 5555557888899999999999999 4551 4445
Q ss_pred hHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 67 GIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 67 ~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.-+++..+++.+.. +.+++.++|.+|||-++..+....| .+.+.++.-+.+.
T Consensus 102 ~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~ 155 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV 155 (242)
T ss_pred chhHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC
Confidence 55666666666653 2568999999999999999988887 5777777766554
No 160
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=97.66 E-value=0.00032 Score=64.48 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=59.8
Q ss_pred HHHHHHhCCCEEEEeCCCCC--------C-hhhhHHHHHHHHHHhCC------------------CCCcEEEEEeChhHH
Q 043205 43 QITALASLGYRAVAPDLRGY--------T-CFHGIADLVGLIDIVAP------------------NDEKMFVVGHDWGAF 95 (207)
Q Consensus 43 ~~~~l~~~g~~v~~~D~~G~--------~-~~~~~~~~~~~~~~l~~------------------~~~~~~lvGhS~Gg~ 95 (207)
+...+.++||.|+..|.||. . .....+|..++++.+.. ...++.++|.|+||.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~ 350 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGT 350 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHH
Confidence 45788889999999999998 2 14455677777777652 146899999999999
Q ss_pred HHHHHHHhCCcccceEEEeccC
Q 043205 96 MAWFLCLFRPDRVKALVNMSVT 117 (207)
Q Consensus 96 ia~~~a~~~p~~v~~lv~~~~~ 117 (207)
+++.+|...|+.++++|..++.
T Consensus 351 ~~~~aAa~~pp~LkAIVp~a~i 372 (767)
T PRK05371 351 LPNAVATTGVEGLETIIPEAAI 372 (767)
T ss_pred HHHHHHhhCCCcceEEEeeCCC
Confidence 9999999888889999987644
No 161
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.0004 Score=57.44 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=60.4
Q ss_pred CcEEEEECCCCCChhh-HHHHHHHHHhCCC--EEEEeCCCCC-----------ChhhhHHHHHHHHHHhCCC--CCcEEE
Q 043205 24 GPVILFLHGFPELWYS-WRHQITALASLGY--RAVAPDLRGY-----------TCFHGIADLVGLIDIVAPN--DEKMFV 87 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~-~~~~~~~l~~~g~--~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~~--~~~~~l 87 (207)
+..+||+||+..+..+ -...++...+.|+ ..+.+.+|.. +...-..+++.+++.|..+ .+++++
T Consensus 116 k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~i 195 (377)
T COG4782 116 KTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYL 195 (377)
T ss_pred CeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEEE
Confidence 5799999999877543 3444555544444 4555666664 3344455666666666432 678999
Q ss_pred EEeChhHHHHHHHHHh----C----CcccceEEEecc
Q 043205 88 VGHDWGAFMAWFLCLF----R----PDRVKALVNMSV 116 (207)
Q Consensus 88 vGhS~Gg~ia~~~a~~----~----p~~v~~lv~~~~ 116 (207)
++||||..+++....+ . +.+++-+|+-++
T Consensus 196 lAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaP 232 (377)
T COG4782 196 LAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAP 232 (377)
T ss_pred EEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCC
Confidence 9999999999877543 2 234666666654
No 162
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.64 E-value=0.00015 Score=56.46 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=64.1
Q ss_pred CCEEEEEEee---CCCcEEEEEC-CCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-------------ChhhhH-HHHHH
Q 043205 12 NGINMHVAEK---GQGPVILFLH-GFPELWYSWRHQITALASLGYRAVAPDLRGY-------------TCFHGI-ADLVG 73 (207)
Q Consensus 12 ~g~~i~~~~~---g~~~~lvllH-G~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-------------~~~~~~-~~~~~ 73 (207)
||..+..+.+ ++.+-.+++- +.+.....++.++..+.+.||.|...|+||. ...+.+ .|+..
T Consensus 14 DG~~l~~~~~pA~~~~~g~~~va~a~Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~a 93 (281)
T COG4757 14 DGYSLPGQRFPADGKASGRLVVAGATGVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPA 93 (281)
T ss_pred CCccCccccccCCCCCCCcEEecccCCcchhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcchHH
Confidence 6666544433 3334344444 4556667789999999999999999999997 222222 35555
Q ss_pred HHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCcccceEE
Q 043205 74 LIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALV 112 (207)
Q Consensus 74 ~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 112 (207)
.++.++. ...+.+++|||+||.+.-. +..++ +..+..
T Consensus 94 al~~~~~~~~~~P~y~vgHS~GGqa~gL-~~~~~-k~~a~~ 132 (281)
T COG4757 94 ALAALKKALPGHPLYFVGHSFGGQALGL-LGQHP-KYAAFA 132 (281)
T ss_pred HHHHHHhhCCCCceEEeeccccceeecc-cccCc-ccceee
Confidence 5665553 2578999999999997543 33455 344443
No 163
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.63 E-value=0.00052 Score=60.41 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCC------C------hhhhHHHHHHHHHHhCC-C-CCcEEEEEeChhHHHHHHHHHh
Q 043205 38 YSWRHQITALASLGYRAVAPDLRGY------T------CFHGIADLVGLIDIVAP-N-DEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 38 ~~~~~~~~~l~~~g~~v~~~D~~G~------~------~~~~~~~~~~~~~~l~~-~-~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
..|..+++.|++.||. --|+.|. + .+.+...++.+++..-. + .++++|+||||||.+++.+...
T Consensus 156 ~vw~kLIe~L~~iGY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~w 233 (642)
T PLN02517 156 FVWAVLIANLARIGYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKW 233 (642)
T ss_pred eeHHHHHHHHHHcCCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHh
Confidence 3679999999998886 3344443 1 24455566666665421 2 5799999999999999987763
Q ss_pred C---------------CcccceEEEeccCCCC
Q 043205 104 R---------------PDRVKALVNMSVTFDH 120 (207)
Q Consensus 104 ~---------------p~~v~~lv~~~~~~~~ 120 (207)
- .+.|+++|.+++++..
T Consensus 234 v~~~~~~gG~gG~~W~dKyI~s~I~Iagp~lG 265 (642)
T PLN02517 234 VEAPAPMGGGGGPGWCAKHIKAVMNIGGPFLG 265 (642)
T ss_pred ccccccccCCcchHHHHHHHHHheecccccCC
Confidence 2 1247899999988764
No 164
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=97.62 E-value=0.00014 Score=50.76 Aligned_cols=43 Identities=21% Similarity=0.512 Sum_probs=29.5
Q ss_pred CCCceEEEEECCEEEEEEeeC-C---CcEEEEECCCCCChhhHHHHH
Q 043205 2 EGIQHRIVKVNGINMHVAEKG-Q---GPVILFLHGFPELWYSWRHQI 44 (207)
Q Consensus 2 ~~~~~~~v~~~g~~i~~~~~g-~---~~~lvllHG~~~~~~~~~~~~ 44 (207)
|.+.+..++++|..||+.... + ..||||+||+++|...|.+++
T Consensus 66 N~~phf~t~I~g~~iHFih~rs~~~~aiPLll~HGWPgSf~Ef~~vI 112 (112)
T PF06441_consen 66 NSFPHFKTEIDGLDIHFIHVRSKRPNAIPLLLLHGWPGSFLEFLKVI 112 (112)
T ss_dssp TTS-EEEEEETTEEEEEEEE--S-TT-EEEEEE--SS--GGGGHHHH
T ss_pred HcCCCeeEEEeeEEEEEEEeeCCCCCCeEEEEECCCCccHHhHHhhC
Confidence 567888999999999997543 2 459999999999998886653
No 165
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.57 E-value=0.00032 Score=54.35 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=73.0
Q ss_pred CcEEEEECCCCCCh---hhHHHHHHHHHhCCCEEEEeCCCCC-------ChhhhHHHHHHHHHHhCCC--CCcEEEEEeC
Q 043205 24 GPVILFLHGFPELW---YSWRHQITALASLGYRAVAPDLRGY-------TCFHGIADLVGLIDIVAPN--DEKMFVVGHD 91 (207)
Q Consensus 24 ~~~lvllHG~~~~~---~~~~~~~~~l~~~g~~v~~~D~~G~-------~~~~~~~~~~~~~~~l~~~--~~~~~lvGhS 91 (207)
+..|||+-|.+..- ..-..+...|-+.+|.++.+-++.+ ++++-++|+.+++++++.. ..+++++|||
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhS 115 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHS 115 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecC
Confidence 56788888887543 2346677888888999999987765 8889999999999988742 4489999999
Q ss_pred hhHHHHHHHHHh--CCcccceEEEeccCC
Q 043205 92 WGAFMAWFLCLF--RPDRVKALVNMSVTF 118 (207)
Q Consensus 92 ~Gg~ia~~~a~~--~p~~v~~lv~~~~~~ 118 (207)
-|+.=.+.+..+ .+..+++.|+.++..
T Consensus 116 TGcQdi~yYlTnt~~~r~iraaIlqApVS 144 (299)
T KOG4840|consen 116 TGCQDIMYYLTNTTKDRKIRAAILQAPVS 144 (299)
T ss_pred ccchHHHHHHHhccchHHHHHHHHhCccc
Confidence 999988888743 355677777766543
No 166
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.52 E-value=0.0012 Score=54.75 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=63.1
Q ss_pred CcEEEEECCCCCChhhH-HHH-HHHHHhCCCEEEEeCCCCC--------------Chhh-------hHHHHHHHHHHhCC
Q 043205 24 GPVILFLHGFPELWYSW-RHQ-ITALASLGYRAVAPDLRGY--------------TCFH-------GIADLVGLIDIVAP 80 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~-~~~-~~~l~~~g~~v~~~D~~G~--------------~~~~-------~~~~~~~~~~~l~~ 80 (207)
+|..|.++|-|+..... +.+ +..|.+.|+..+.+..|-| +..+ ...+...++..+..
T Consensus 92 rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~ 171 (348)
T PF09752_consen 92 RPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLER 171 (348)
T ss_pred CceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHHh
Confidence 67888888888754333 223 5677777999999988877 1111 11222333333322
Q ss_pred C-CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccC
Q 043205 81 N-DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVT 117 (207)
Q Consensus 81 ~-~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 117 (207)
+ ..++.+.|.||||..|...|...|..+..+-++++.
T Consensus 172 ~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 172 EGYGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWS 209 (348)
T ss_pred cCCCceEEEEechhHhhHHhhhhcCCCceeEEEeeccc
Confidence 1 679999999999999999999999877666666543
No 167
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=97.50 E-value=0.00038 Score=61.03 Aligned_cols=108 Identities=14% Similarity=0.054 Sum_probs=61.9
Q ss_pred CCEEEEEEeeC------CCcEEEEECCCC---CCh-hhHHHHHHHHHhCCCEEEEeCCCCC-------------------
Q 043205 12 NGINMHVAEKG------QGPVILFLHGFP---ELW-YSWRHQITALASLGYRAVAPDLRGY------------------- 62 (207)
Q Consensus 12 ~g~~i~~~~~g------~~~~lvllHG~~---~~~-~~~~~~~~~l~~~g~~v~~~D~~G~------------------- 62 (207)
|...+.+..+. +.|++|+|||.+ ++. .....-...++..+.-|+.+++|=-
T Consensus 107 DCL~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl 186 (535)
T PF00135_consen 107 DCLYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGL 186 (535)
T ss_dssp ---EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHH
T ss_pred hHHHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccCchhhhh
Confidence 33445555443 149999999964 333 1222333445566899999887641
Q ss_pred -ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh--CCcccceEEEeccCCC
Q 043205 63 -TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF--RPDRVKALVNMSVTFD 119 (207)
Q Consensus 63 -~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~--~p~~v~~lv~~~~~~~ 119 (207)
+...-.++|++-+..++.+.++|.|+|||.||..+..+... ....++++|+.+++..
T Consensus 187 ~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~ 246 (535)
T PF00135_consen 187 LDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSAL 246 (535)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TT
T ss_pred hhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccccc
Confidence 11122344555555566456789999999999998877654 2357999999998554
No 168
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.37 E-value=0.00052 Score=50.40 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCc----ccceEEEeccCCC
Q 043205 67 GIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPD----RVKALVNMSVTFD 119 (207)
Q Consensus 67 ~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~----~v~~lv~~~~~~~ 119 (207)
+.+.+...+++... ...+++++|||+||.+|..++..... ....++.+++|..
T Consensus 10 ~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~ 68 (153)
T cd00741 10 LANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRV 68 (153)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCcc
Confidence 44444444444321 16789999999999999998877644 5667777776654
No 169
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.33 E-value=0.0018 Score=56.97 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=72.6
Q ss_pred CCEEEEEEee-----CCCcEEEEECCCCCChh---hH--HHHHH---HHHhCCCEEEEeCCCCC---------ChhhhHH
Q 043205 12 NGINMHVAEK-----GQGPVILFLHGFPELWY---SW--RHQIT---ALASLGYRAVAPDLRGY---------TCFHGIA 69 (207)
Q Consensus 12 ~g~~i~~~~~-----g~~~~lvllHG~~~~~~---~~--~~~~~---~l~~~g~~v~~~D~~G~---------~~~~~~~ 69 (207)
||++|+...+ |+.|+++..+-.+=... .+ ....+ .++.+||.|+..|.||. -...-++
T Consensus 28 DGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~ 107 (563)
T COG2936 28 DGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDPESSREAE 107 (563)
T ss_pred CCeEEEEEEEccCCCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccceecccccc
Confidence 8998875433 34688888883222111 11 12233 57788999999999997 1111233
Q ss_pred ---HHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 70 ---DLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 70 ---~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
|+.+++.+......++..+|.|++|...+.+|+..|..+++++...+...
T Consensus 108 Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 108 DGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred chhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 44445544332367899999999999999999988888898887776554
No 170
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.33 E-value=0.00054 Score=49.25 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 66 HGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
.+.+.+.+++++.. ..++++.|||+||.+|..++..
T Consensus 49 ~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 49 QILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 34455666555555 5789999999999999988765
No 171
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.32 E-value=0.0023 Score=53.74 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=55.8
Q ss_pred CcEEEEECCCCCChhhH-------HHHHHHHHhCCCEEEEeCCC-------CCChhhh----HHHHHHHHHHhCCCCCcE
Q 043205 24 GPVILFLHGFPELWYSW-------RHQITALASLGYRAVAPDLR-------GYTCFHG----IADLVGLIDIVAPNDEKM 85 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~-------~~~~~~l~~~g~~v~~~D~~-------G~~~~~~----~~~~~~~~~~l~~~~~~~ 85 (207)
.|+|+++||.|-.-... ..+...| + ...++++|+. |+..... ++-...+++..+ .+.+
T Consensus 122 DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~~G--~~nI 197 (374)
T PF10340_consen 122 DPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVESEG--NKNI 197 (374)
T ss_pred CcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhccC--CCeE
Confidence 58999999986332211 1122222 2 3577777764 4433333 333444444445 7899
Q ss_pred EEEEeChhHHHHHHHHHh--CC---cccceEEEeccC
Q 043205 86 FVVGHDWGAFMAWFLCLF--RP---DRVKALVNMSVT 117 (207)
Q Consensus 86 ~lvGhS~Gg~ia~~~a~~--~p---~~v~~lv~~~~~ 117 (207)
+|+|-|.||.+++.+... .+ ...+++|+++|=
T Consensus 198 ~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPW 234 (374)
T PF10340_consen 198 ILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPW 234 (374)
T ss_pred EEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCC
Confidence 999999999999887643 11 236789999853
No 172
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0033 Score=48.53 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=61.0
Q ss_pred CcEEEEECCCCC-ChhhHH---------------HHHHHHHhCCCEEEEeCCCCC---------------ChhhhHHH-H
Q 043205 24 GPVILFLHGFPE-LWYSWR---------------HQITALASLGYRAVAPDLRGY---------------TCFHGIAD-L 71 (207)
Q Consensus 24 ~~~lvllHG~~~-~~~~~~---------------~~~~~l~~~g~~v~~~D~~G~---------------~~~~~~~~-~ 71 (207)
...+|+|||.|- .+..|. +.+....+.||.|++.+.--- +..+-+.. .
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 458999999873 233442 223455567999999876521 22222222 2
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCc--ccceEEEeccCCC
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPD--RVKALVNMSVTFD 119 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~--~v~~lv~~~~~~~ 119 (207)
..++.-.. ...+.++.||.||...+.+..+.|+ +|-++.+.+++..
T Consensus 181 ~~~v~pa~--~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~~ 228 (297)
T KOG3967|consen 181 KNIVLPAK--AESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAMG 228 (297)
T ss_pred HHHhcccC--cceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccccc
Confidence 22333333 6789999999999999999999875 5666667666643
No 173
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.16 E-value=0.0052 Score=51.88 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.8
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 84 KMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 84 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
|++++|+|.||+++..+|.-.|-.+++++=-++...
T Consensus 185 p~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 185 PKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred cEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 899999999999999999999998888876554443
No 174
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0058 Score=49.52 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=61.1
Q ss_pred CcEEEEECCC--CCChhhHHHHHHHHHhC---CCEEEEeCCCCC------------ChhhhHHHHHHHHHHhCC---CCC
Q 043205 24 GPVILFLHGF--PELWYSWRHQITALASL---GYRAVAPDLRGY------------TCFHGIADLVGLIDIVAP---NDE 83 (207)
Q Consensus 24 ~~~lvllHG~--~~~~~~~~~~~~~l~~~---g~~v~~~D~~G~------------~~~~~~~~~~~~~~~l~~---~~~ 83 (207)
.|++++.||- -.+...++.+...+++. .-.++.+|.-.- ....+++.+.-.+++--. ..+
T Consensus 98 ~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~~~n~~~~~~L~~eLlP~v~~~yp~~~~a~ 177 (299)
T COG2382 98 YPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPPAILVGIDYIDVKKRREELHCNEAYWRFLAQELLPYVEERYPTSADAD 177 (299)
T ss_pred ccEEEEeccHHHHhcCChHHHHHHHHHcCCCCCceEEecCCCCHHHHHHHhcccHHHHHHHHHHhhhhhhccCcccccCC
Confidence 6899999983 34444554444444432 345666665441 222233333333332111 245
Q ss_pred cEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 84 KMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 84 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
.-+|.|-|+||.+++..+.+||+++-.++..++.+.
T Consensus 178 ~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~ 213 (299)
T COG2382 178 GRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFW 213 (299)
T ss_pred CcEEeccccccHHHHHHHhcCchhhceeeccCCccc
Confidence 678999999999999999999999999998887664
No 175
>COG0627 Predicted esterase [General function prediction only]
Probab=96.99 E-value=0.0031 Score=52.05 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=63.6
Q ss_pred CcEEEEECCCCCChhhH---HHHHHHHHhCCCEEEEeCCC--------------C----C----C----------hhh-h
Q 043205 24 GPVILFLHGFPELWYSW---RHQITALASLGYRAVAPDLR--------------G----Y----T----------CFH-G 67 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~---~~~~~~l~~~g~~v~~~D~~--------------G----~----~----------~~~-~ 67 (207)
-|+++++||..++...| ..+-......|+.++.+|-. | + . .+. +
T Consensus 54 ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tfl 133 (316)
T COG0627 54 IPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETFL 133 (316)
T ss_pred CCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHHH
Confidence 37999999998775443 22334444557777776433 2 1 0 111 2
Q ss_pred HHHHHHHHH-HhCCCC--CcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCCC
Q 043205 68 IADLVGLID-IVAPND--EKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDHF 121 (207)
Q Consensus 68 ~~~~~~~~~-~l~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~~ 121 (207)
.+++-..++ +...+. +.-.++||||||.-|+.+|+++|++++.+..+++...+.
T Consensus 134 ~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 134 TQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred HhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 233332333 232122 268899999999999999999999999999988776654
No 176
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=96.97 E-value=0.0012 Score=56.45 Aligned_cols=82 Identities=20% Similarity=0.373 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhCCCE------EEEeCCCCC-----ChhhhHHHHHHHHHHhCC-C-CCcEEEEEeChhHHHHHHHHHhC
Q 043205 38 YSWRHQITALASLGYR------AVAPDLRGY-----TCFHGIADLVGLIDIVAP-N-DEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 38 ~~~~~~~~~l~~~g~~------v~~~D~~G~-----~~~~~~~~~~~~~~~l~~-~-~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
..|..+++.+..-||. -..+|+|=- ..+++...++..++..-. . .+|+++++||||+.+...+...+
T Consensus 124 ~~w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~ 203 (473)
T KOG2369|consen 124 WYWHELIENLVGIGYERGKTLFGAPYDWRLSYHNSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWV 203 (473)
T ss_pred HHHHHHHHHHHhhCcccCceeeccccchhhccCChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhcc
Confidence 4788999999887776 344677652 233344444444443211 1 58999999999999999999887
Q ss_pred Cc--------ccceEEEeccCCC
Q 043205 105 PD--------RVKALVNMSVTFD 119 (207)
Q Consensus 105 p~--------~v~~lv~~~~~~~ 119 (207)
++ -+++++.++++..
T Consensus 204 ~~~~~~W~~k~I~sfvnig~p~l 226 (473)
T KOG2369|consen 204 EAEGPAWCDKYIKSFVNIGAPWL 226 (473)
T ss_pred cccchhHHHHHHHHHHccCchhc
Confidence 65 3678888877654
No 177
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.0034 Score=52.71 Aligned_cols=81 Identities=26% Similarity=0.217 Sum_probs=62.4
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-----ChhhhHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHH
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-----TCFHGIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAW 98 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-----~~~~~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~ 98 (207)
.-||+.|=++-...=+.+...|+++|+.|+.+|-.-| +.++.++|+..+++.... ...++.|+|.|+|+=+..
T Consensus 262 ~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYfW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADvlP 341 (456)
T COG3946 262 VAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYFWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGADVLP 341 (456)
T ss_pred EEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhhhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccchhhH
Confidence 4556666555444445667899999999999995554 999999999999998764 257899999999999877
Q ss_pred HHHHhCCc
Q 043205 99 FLCLFRPD 106 (207)
Q Consensus 99 ~~a~~~p~ 106 (207)
....+.|.
T Consensus 342 ~~~n~L~~ 349 (456)
T COG3946 342 FAYNRLPP 349 (456)
T ss_pred HHHHhCCH
Confidence 66665553
No 178
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=96.94 E-value=0.003 Score=49.20 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhCC-CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 67 GIADLVGLIDIVAP-NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 67 ~~~~~~~~~~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+.++..+++..... +.+++.++|.|.||-+|+.+|..+| .|+++|.++++..
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~ 57 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSV 57 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCcee
Confidence 33444455554432 2468999999999999999999999 6999999987654
No 179
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.93 E-value=0.02 Score=45.01 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
++..+|-+=|--.+...|..-+... +. ..-|. ...-.+-+..++...+ +++++.|||.||.+|..++.
T Consensus 36 ~~~~~vaFRGTd~t~~~W~ed~~~~----~~---~~~~~--q~~A~~yl~~~~~~~~---~~i~v~GHSkGGnLA~yaa~ 103 (224)
T PF11187_consen 36 DGEYVVAFRGTDDTLVDWKEDFNMS----FQ---DETPQ--QKSALAYLKKIAKKYP---GKIYVTGHSKGGNLAQYAAA 103 (224)
T ss_pred CCeEEEEEECCCCchhhHHHHHHhh----cC---CCCHH--HHHHHHHHHHHHHhCC---CCEEEEEechhhHHHHHHHH
Confidence 3455665566655666675422211 11 11111 1122233444444444 46999999999999999988
Q ss_pred hC----CcccceEEEeccCCCC
Q 043205 103 FR----PDRVKALVNMSVTFDH 120 (207)
Q Consensus 103 ~~----p~~v~~lv~~~~~~~~ 120 (207)
.. .++|.+++..++|-..
T Consensus 104 ~~~~~~~~rI~~vy~fDgPGf~ 125 (224)
T PF11187_consen 104 NCDDEIQDRISKVYSFDGPGFS 125 (224)
T ss_pred HccHHHhhheeEEEEeeCCCCC
Confidence 73 3578899988877654
No 180
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.90 E-value=0.0019 Score=51.55 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=34.9
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 81 NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 81 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
+.++-.++|||+||.+++.....+|+.+.+.++++++..
T Consensus 135 ~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlW 173 (264)
T COG2819 135 NSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLW 173 (264)
T ss_pred CcccceeeeecchhHHHHHHHhcCcchhceeeeecchhh
Confidence 356788999999999999999999999999999998654
No 181
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.90 E-value=0.012 Score=50.81 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=73.9
Q ss_pred CCcEEEEECCCCCChhhH-----HHHHHHHHhCCCEEEEeCCCCC-----------------ChhhhHHHHHHHHHHhCC
Q 043205 23 QGPVILFLHGFPELWYSW-----RHQITALASLGYRAVAPDLRGY-----------------TCFHGIADLVGLIDIVAP 80 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~-----~~~~~~l~~~g~~v~~~D~~G~-----------------~~~~~~~~~~~~~~~l~~ 80 (207)
.+|..|+|-|=+.....| ........+.|-.|+..++|=| +..+...|+..+++++..
T Consensus 85 ~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~ 164 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNA 164 (514)
T ss_pred CCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHh
Confidence 368888888866544444 1223334455888999988877 667778888888888754
Q ss_pred -----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 81 -----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 81 -----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+..+++.+|-|.-|.++..+=.+||+.+.+-|.-++|...
T Consensus 165 k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A 209 (514)
T KOG2182|consen 165 KFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLA 209 (514)
T ss_pred hcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeE
Confidence 1238999999999999999999999999998888777654
No 182
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.86 E-value=0.0044 Score=52.25 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=67.5
Q ss_pred cEEEEECCCCCChhhH-------HHHHHHHHhCCCEEEEeCCCCC--------------------ChhhhHHHHHHHHHH
Q 043205 25 PVILFLHGFPELWYSW-------RHQITALASLGYRAVAPDLRGY--------------------TCFHGIADLVGLIDI 77 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~-------~~~~~~l~~~g~~v~~~D~~G~--------------------~~~~~~~~~~~~~~~ 77 (207)
.||+|--|.-++-..+ ..+++.+ +--++-+++|-| +.++-..|...++.+
T Consensus 81 gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~---~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~ 157 (492)
T KOG2183|consen 81 GPIFFYTGNEGDIEWFANNTGFMWDLAPEL---KALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTF 157 (492)
T ss_pred CceEEEeCCcccHHHHHhccchHHhhhHhh---CceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHH
Confidence 6888888876664433 2233333 456777777766 666667788888887
Q ss_pred hCC----CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCC
Q 043205 78 VAP----NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFD 119 (207)
Q Consensus 78 l~~----~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 119 (207)
++. +..+++.+|-|.||+++..+=.+||..+.+...-+.|..
T Consensus 158 lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 158 LKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred HhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceE
Confidence 764 256899999999999999999999998888776666543
No 183
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=96.82 E-value=0.0078 Score=52.24 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=59.7
Q ss_pred HHHHHHHhCCCEEEEeC-----CCCCChhhhHHHHHHHHHHhCC---CCCcEEEEEeChhHHHHHHHHHhCCcccceEEE
Q 043205 42 HQITALASLGYRAVAPD-----LRGYTCFHGIADLVGLIDIVAP---NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVN 113 (207)
Q Consensus 42 ~~~~~l~~~g~~v~~~D-----~~G~~~~~~~~~~~~~~~~l~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~ 113 (207)
..+-...+.|+.|+.+. .||.|+.+.+.....+++++.. +..+.+++|.|.||..++.+|+.+|+.+.-+|+
T Consensus 91 SevG~AL~~GHPvYFV~F~p~P~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvl 170 (581)
T PF11339_consen 91 SEVGVALRAGHPVYFVGFFPEPEPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVL 170 (581)
T ss_pred cHHHHHHHcCCCeEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceee
Confidence 34444445588877653 5666888777766666666543 234899999999999999999999999988888
Q ss_pred eccCCCCC
Q 043205 114 MSVTFDHF 121 (207)
Q Consensus 114 ~~~~~~~~ 121 (207)
-++|...+
T Consensus 171 aGaPlsyw 178 (581)
T PF11339_consen 171 AGAPLSYW 178 (581)
T ss_pred cCCCcccc
Confidence 88776654
No 184
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.79 E-value=0.031 Score=44.25 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=56.3
Q ss_pred EEEEECCC--C-CChhhHHHHHHHHHhCCCEEEEeCC-CCCChhhhHHHH----HHHHHHhCC----C--CCcEEEEEeC
Q 043205 26 VILFLHGF--P-ELWYSWRHQITALASLGYRAVAPDL-RGYTCFHGIADL----VGLIDIVAP----N--DEKMFVVGHD 91 (207)
Q Consensus 26 ~lvllHG~--~-~~~~~~~~~~~~l~~~g~~v~~~D~-~G~~~~~~~~~~----~~~~~~l~~----~--~~~~~lvGhS 91 (207)
+|=|+-|. + .-.-.|+.+.+.|+++||.|++.-+ .|++-...+..+ ...++.+.. . .-+++-+|||
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHS 98 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHS 98 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecc
Confidence 55555553 2 2234788999999999999998654 344333333332 223333321 1 1367889999
Q ss_pred hhHHHHHHHHHhCCcccceEEEec
Q 043205 92 WGAFMAWFLCLFRPDRVKALVNMS 115 (207)
Q Consensus 92 ~Gg~ia~~~a~~~p~~v~~lv~~~ 115 (207)
+|+-+-+.+...++..-++-++++
T Consensus 99 lGcklhlLi~s~~~~~r~gniliS 122 (250)
T PF07082_consen 99 LGCKLHLLIGSLFDVERAGNILIS 122 (250)
T ss_pred cchHHHHHHhhhccCcccceEEEe
Confidence 999998888777664446666665
No 185
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=96.75 E-value=0.023 Score=44.17 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=57.0
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCE-EEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYR-AVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~-v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
+..|||+.|++.+...+.++.. ..++. ++++|++..+.+. | ..+ .+.+.|||+|||-.+|.++..
T Consensus 11 ~~LilfF~GWg~d~~~f~hL~~---~~~~D~l~~yDYr~l~~d~---~------~~~--y~~i~lvAWSmGVw~A~~~l~ 76 (213)
T PF04301_consen 11 KELILFFAGWGMDPSPFSHLIL---PENYDVLICYDYRDLDFDF---D------LSG--YREIYLVAWSMGVWAANRVLQ 76 (213)
T ss_pred CeEEEEEecCCCChHHhhhccC---CCCccEEEEecCccccccc---c------ccc--CceEEEEEEeHHHHHHHHHhc
Confidence 4789999999999877655431 22454 4667888754321 1 112 578999999999999988766
Q ss_pred hCCcccceEEEeccCCCCCC
Q 043205 103 FRPDRVKALVNMSVTFDHFD 122 (207)
Q Consensus 103 ~~p~~v~~lv~~~~~~~~~~ 122 (207)
..| ++.-+.+++...+.+
T Consensus 77 ~~~--~~~aiAINGT~~Pid 94 (213)
T PF04301_consen 77 GIP--FKRAIAINGTPYPID 94 (213)
T ss_pred cCC--cceeEEEECCCCCcC
Confidence 554 666777776665543
No 186
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.64 E-value=0.0042 Score=48.69 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.3
Q ss_pred CCcEEEEEeChhHHHHHHHHHh
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
..++++.|||+||.+|..++..
T Consensus 127 ~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 127 DYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred CceEEEEccCHHHHHHHHHHHH
Confidence 5689999999999999888765
No 187
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=96.63 E-value=0.014 Score=47.69 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=46.5
Q ss_pred HHHHHHhCCCEEEEeCCCCC-----ChhhhHHHHHHHHHHh---CC-----CCCcEEEEEeChhHHHHHHHHHh----CC
Q 043205 43 QITALASLGYRAVAPDLRGY-----TCFHGIADLVGLIDIV---AP-----NDEKMFVVGHDWGAFMAWFLCLF----RP 105 (207)
Q Consensus 43 ~~~~l~~~g~~v~~~D~~G~-----~~~~~~~~~~~~~~~l---~~-----~~~~~~lvGhS~Gg~ia~~~a~~----~p 105 (207)
++..+.++||.|+++|+.|. .-...+..+.+.++.. .. ...++.++|||.||.-++..+.. .|
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~~YAp 97 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAPSYAP 97 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhHHhCc
Confidence 44556677999999999997 2222333333333222 11 13589999999999998776643 35
Q ss_pred cc---cceEEEeccC
Q 043205 106 DR---VKALVNMSVT 117 (207)
Q Consensus 106 ~~---v~~lv~~~~~ 117 (207)
|. +.+.+..+++
T Consensus 98 eL~~~l~Gaa~gg~~ 112 (290)
T PF03583_consen 98 ELNRDLVGAAAGGPP 112 (290)
T ss_pred ccccceeEEeccCCc
Confidence 53 5555555543
No 188
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.43 E-value=0.014 Score=45.14 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=44.8
Q ss_pred HHHHhCCCEEEEeCCCCC-------------------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC-
Q 043205 45 TALASLGYRAVAPDLRGY-------------------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR- 104 (207)
Q Consensus 45 ~~l~~~g~~v~~~D~~G~-------------------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~- 104 (207)
..|... .+|++|=+|-. ...+..+.....+++... ..+++|+|||.|+.+..++..++
T Consensus 40 s~F~~~-~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~-GRPfILaGHSQGs~~l~~LL~e~~ 117 (207)
T PF11288_consen 40 SAFNGV-CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNN-GRPFILAGHSQGSMHLLRLLKEEI 117 (207)
T ss_pred hhhhcC-CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCC-CCCEEEEEeChHHHHHHHHHHHHh
Confidence 344443 67888766654 222233334445555542 56999999999999999998764
Q ss_pred ---C--cccceEEEeccCCC
Q 043205 105 ---P--DRVKALVNMSVTFD 119 (207)
Q Consensus 105 ---p--~~v~~lv~~~~~~~ 119 (207)
| +++-+..+++.+..
T Consensus 118 ~~~pl~~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 118 AGDPLRKRLVAAYLIGYPVT 137 (207)
T ss_pred cCchHHhhhheeeecCcccc
Confidence 2 23444455655443
No 189
>PLN02162 triacylglycerol lipase
Probab=96.36 E-value=0.011 Score=50.97 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh---C-----CcccceEEEeccC
Q 043205 69 ADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF---R-----PDRVKALVNMSVT 117 (207)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~---~-----p~~v~~lv~~~~~ 117 (207)
+.+.+++.+.. ..++++.|||+||.+|..+|.. + .+++.+++..+.|
T Consensus 266 ~~L~~lL~k~p--~~kliVTGHSLGGALAtLaAa~L~~~~~~~l~~~~~~vYTFGqP 320 (475)
T PLN02162 266 QMLRDKLARNK--NLKYILTGHSLGGALAALFPAILAIHGEDELLDKLEGIYTFGQP 320 (475)
T ss_pred HHHHHHHHhCC--CceEEEEecChHHHHHHHHHHHHHHccccccccccceEEEeCCC
Confidence 34444444444 5689999999999999887541 1 1234566666654
No 190
>PLN00413 triacylglycerol lipase
Probab=96.30 E-value=0.012 Score=50.70 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh---C-----CcccceEEEeccCC
Q 043205 67 GIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF---R-----PDRVKALVNMSVTF 118 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~---~-----p~~v~~lv~~~~~~ 118 (207)
+.+.+.+++++.. ..++++.|||+||++|..+|.. + ..++.+++..+.|-
T Consensus 270 i~~~Lk~ll~~~p--~~kliVTGHSLGGALAtLaA~~L~~~~~~~~~~ri~~VYTFG~PR 327 (479)
T PLN00413 270 ILRHLKEIFDQNP--TSKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQPR 327 (479)
T ss_pred HHHHHHHHHHHCC--CCeEEEEecCHHHHHHHHHHHHHHhccchhhccccceEEEeCCCC
Confidence 4455666666665 5689999999999999988742 1 12455666666543
No 191
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.13 E-value=0.11 Score=44.18 Aligned_cols=112 Identities=16% Similarity=0.195 Sum_probs=69.8
Q ss_pred EEEEEC---CEEEEEEeeC------CCcEEEEECCCCCChhhHHHHHH-------------------HHHhCCCEEEEeC
Q 043205 7 RIVKVN---GINMHVAEKG------QGPVILFLHGFPELWYSWRHQIT-------------------ALASLGYRAVAPD 58 (207)
Q Consensus 7 ~~v~~~---g~~i~~~~~g------~~~~lvllHG~~~~~~~~~~~~~-------------------~l~~~g~~v~~~D 58 (207)
.++.++ +..++|.-.. ++|.+|.+.|.++++..|-.+.+ ...+ -.+++-+|
T Consensus 14 Gyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an~l~iD 92 (415)
T PF00450_consen 14 GYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FANLLFID 92 (415)
T ss_dssp EEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSEEEEE-
T ss_pred EEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccceEEEe
Confidence 367776 5778776432 36999999999999988755432 0111 26788899
Q ss_pred CC-C--C-----------ChhhhHHHHHHHHHHh----CC-CCCcEEEEEeChhHHHHHHHHHh----C------Ccccc
Q 043205 59 LR-G--Y-----------TCFHGIADLVGLIDIV----AP-NDEKMFVVGHDWGAFMAWFLCLF----R------PDRVK 109 (207)
Q Consensus 59 ~~-G--~-----------~~~~~~~~~~~~~~~l----~~-~~~~~~lvGhS~Gg~ia~~~a~~----~------p~~v~ 109 (207)
.| | + +.++.++++..+++.+ .. ...+++|.|-|+||..+..+|.. . +-.++
T Consensus 93 ~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLk 172 (415)
T PF00450_consen 93 QPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLK 172 (415)
T ss_dssp -STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEE
T ss_pred ecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccc
Confidence 55 4 2 4556677766666553 21 24599999999999987777643 2 23477
Q ss_pred eEEEeccCCC
Q 043205 110 ALVNMSVTFD 119 (207)
Q Consensus 110 ~lv~~~~~~~ 119 (207)
++++.++-..
T Consensus 173 Gi~IGng~~d 182 (415)
T PF00450_consen 173 GIAIGNGWID 182 (415)
T ss_dssp EEEEESE-SB
T ss_pred cceecCcccc
Confidence 8887776443
No 192
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=96.06 E-value=0.021 Score=43.15 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHhCCC---CCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 65 FHGIADLVGLIDIVAPN---DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 65 ~~~~~~~~~~~~~l~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+..+.++..+++.|... ...+.++|||+|+.++-..+...+..++.+|++++|-..
T Consensus 88 ~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~g 146 (177)
T PF06259_consen 88 RAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGMG 146 (177)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCCC
Confidence 33455666666666531 347899999999999988887766779999999877654
No 193
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=96.04 E-value=0.052 Score=42.19 Aligned_cols=74 Identities=23% Similarity=0.199 Sum_probs=46.7
Q ss_pred CcEEEEECCCCCChhhHHHHH----HHHHhCCCEEEEeCCCCC-------------------------------------
Q 043205 24 GPVILFLHGFPELWYSWRHQI----TALASLGYRAVAPDLRGY------------------------------------- 62 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~----~~l~~~g~~v~~~D~~G~------------------------------------- 62 (207)
++-||||||+-.+...+..-. ..+.+. +..+.+|-|--
T Consensus 5 k~rvLcLHGfrQsg~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~~~~~ 83 (230)
T KOG2551|consen 5 KLRVLCLHGFRQSGKVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNEASFT 83 (230)
T ss_pred CceEEEecchhhccHHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccccccc
Confidence 578999999998887765433 233333 56666665521
Q ss_pred ---ChhhhHHHHHHHHHHhCCCCCcEE-EEEeChhHHHHHHHHH
Q 043205 63 ---TCFHGIADLVGLIDIVAPNDEKMF-VVGHDWGAFMAWFLCL 102 (207)
Q Consensus 63 ---~~~~~~~~~~~~~~~l~~~~~~~~-lvGhS~Gg~ia~~~a~ 102 (207)
..+...+.+.+.+.+.+ |+. |+|.|.|+.++..++.
T Consensus 84 ~~~~~eesl~yl~~~i~enG----PFDGllGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 84 EYFGFEESLEYLEDYIKENG----PFDGLLGFSQGAALAALLAG 123 (230)
T ss_pred cccChHHHHHHHHHHHHHhC----CCccccccchhHHHHHHhhc
Confidence 11122233344444443 555 8999999999998887
No 194
>PLN02571 triacylglycerol lipase
Probab=95.89 E-value=0.015 Score=49.54 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 66 HGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
++.+++..+++.......++++.|||+||.+|...|..
T Consensus 209 qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 209 QVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 45566666666665222378999999999999888764
No 195
>PLN02454 triacylglycerol lipase
Probab=95.88 E-value=0.024 Score=48.27 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
.+..+++.......++++.|||+||.+|...|..
T Consensus 215 ~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 215 KIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 3444444443111249999999999999988754
No 196
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.025 Score=42.31 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=64.3
Q ss_pred EEEEEEeeCC-CcEEEEECCCCCChhhHHHH------HHHHHhCCCEEEEeCCCC---C--ChhhhHHH------H-HHH
Q 043205 14 INMHVAEKGQ-GPVILFLHGFPELWYSWRHQ------ITALASLGYRAVAPDLRG---Y--TCFHGIAD------L-VGL 74 (207)
Q Consensus 14 ~~i~~~~~g~-~~~lvllHG~~~~~~~~~~~------~~~l~~~g~~v~~~D~~G---~--~~~~~~~~------~-~~~ 74 (207)
..+.+...|. +.+||+++-.++....+..+ +..+.+-..+.++++-.. + +..+-++. . .-+
T Consensus 15 RdMel~ryGHaG~pVvvFpts~Grf~eyed~G~v~ala~fie~G~vQlft~~gldsESf~a~h~~~adr~~rH~AyerYv 94 (227)
T COG4947 15 RDMELNRYGHAGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEGLVQLFTLSGLDSESFLATHKNAADRAERHRAYERYV 94 (227)
T ss_pred chhhhhhccCCCCcEEEEecCCCcchhhhhcccHHHHHHHHhcCcEEEEEecccchHhHhhhcCCHHHHHHHHHHHHHHH
Confidence 4455666775 56777777777776665443 233333223445544322 2 11111111 1 123
Q ss_pred HHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 75 IDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 75 ~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+++.- ..+.++-|.||||.-+..+.-++|+.+.++|.+++.+..
T Consensus 95 ~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYda 138 (227)
T COG4947 95 IEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDA 138 (227)
T ss_pred HHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeH
Confidence 33333 356888999999999999999999999999999987653
No 197
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=95.86 E-value=0.0052 Score=51.21 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=31.5
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCc-----ccceEEEeccCCCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRPD-----RVKALVNMSVTFDH 120 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p~-----~v~~lv~~~~~~~~ 120 (207)
..|+.|+|||+|+.+...+...-.+ .|+.++++++|...
T Consensus 219 ~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~ 262 (345)
T PF05277_consen 219 ERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPS 262 (345)
T ss_pred CCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCC
Confidence 5689999999999998887654333 37899999987765
No 198
>PLN02408 phospholipase A1
Probab=95.68 E-value=0.021 Score=47.95 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 67 GIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
+.+.+..+++.......++++.|||+||.+|..+|..
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 3445556666555222369999999999999888764
No 199
>PLN02324 triacylglycerol lipase
Probab=95.60 E-value=0.033 Score=47.39 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 67 GIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
+.+.+..+++.......++++.|||+||.+|...|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 3445666666655212469999999999999888753
No 200
>PLN02310 triacylglycerol lipase
Probab=95.55 E-value=0.044 Score=46.63 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHHHh----CCcccceEEEeccC
Q 043205 67 GIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCLF----RPDRVKALVNMSVT 117 (207)
Q Consensus 67 ~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~----~p~~v~~lv~~~~~ 117 (207)
+.+.+..+++.+.. ...++++.|||+||.+|...|.. .+...-.++..++|
T Consensus 191 Vl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~v~vyTFGsP 247 (405)
T PLN02310 191 VMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEAATTIPDLFVSVISFGAP 247 (405)
T ss_pred HHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHHHHHhCcCcceeEEEecCC
Confidence 44556666666532 13479999999999999887743 23322335555544
No 201
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=95.44 E-value=0.035 Score=42.00 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=41.2
Q ss_pred CEEEEeCCCCC--------ChhhhHHHHHHHHHHhCC-C-CCcEEEEEeChhHHHHHHHHHh------CCcccceEEEec
Q 043205 52 YRAVAPDLRGY--------TCFHGIADLVGLIDIVAP-N-DEKMFVVGHDWGAFMAWFLCLF------RPDRVKALVNMS 115 (207)
Q Consensus 52 ~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~-~-~~~~~lvGhS~Gg~ia~~~a~~------~p~~v~~lv~~~ 115 (207)
..+..+++|.. +...-.+++...++.... . ..+++++|.|.|+.++..++.. ..++|.++++++
T Consensus 40 ~~~~~V~YpA~~~~~~y~~S~~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfG 119 (179)
T PF01083_consen 40 VAVQGVEYPASLGPNSYGDSVAAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFG 119 (179)
T ss_dssp EEEEE--S---SCGGSCHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES
T ss_pred eEEEecCCCCCCCcccccccHHHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEec
Confidence 45555666664 223334444444443211 1 5689999999999999998876 235789999998
Q ss_pred cCCCC
Q 043205 116 VTFDH 120 (207)
Q Consensus 116 ~~~~~ 120 (207)
-|...
T Consensus 120 dP~~~ 124 (179)
T PF01083_consen 120 DPRRG 124 (179)
T ss_dssp -TTTB
T ss_pred CCccc
Confidence 66653
No 202
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=95.39 E-value=0.017 Score=48.66 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=49.2
Q ss_pred cEEEEECCCCC-ChhhHHHHHHHHHhCCCEEEEeCCCCC-------------ChhhhHHHHHHHHHHhCCCCCcEEEEEe
Q 043205 25 PVILFLHGFPE-LWYSWRHQITALASLGYRAVAPDLRGY-------------TCFHGIADLVGLIDIVAPNDEKMFVVGH 90 (207)
Q Consensus 25 ~~lvllHG~~~-~~~~~~~~~~~l~~~g~~v~~~D~~G~-------------~~~~~~~~~~~~~~~l~~~~~~~~lvGh 90 (207)
-.+++.||+-+ +...|...+...+.. +.-..+..+|+ --...++++.+.+.... .+++.++||
T Consensus 81 HLvVlthGi~~~~~~~~~~~~~~~~kk-~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~s--i~kISfvgh 157 (405)
T KOG4372|consen 81 HLVVLTHGLHGADMEYWKEKIEQMTKK-MPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYS--IEKISFVGH 157 (405)
T ss_pred eEEEeccccccccHHHHHHHHHhhhcC-CCcceEeeeccccchhhccccceeeecccHHHHhhhhhccc--cceeeeeee
Confidence 38999999876 677888877777664 32223334443 11234555555555555 679999999
Q ss_pred ChhHHHHHHHH
Q 043205 91 DWGAFMAWFLC 101 (207)
Q Consensus 91 S~Gg~ia~~~a 101 (207)
|+||.++..+.
T Consensus 158 SLGGLvar~AI 168 (405)
T KOG4372|consen 158 SLGGLVARYAI 168 (405)
T ss_pred ecCCeeeeEEE
Confidence 99999976543
No 203
>PLN02934 triacylglycerol lipase
Probab=95.36 E-value=0.049 Score=47.47 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 66 HGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
.+.+.+.+++++.. ..++++.|||+||.+|..++.
T Consensus 306 ~v~~~lk~ll~~~p--~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 306 AVRSKLKSLLKEHK--NAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHCC--CCeEEEeccccHHHHHHHHHH
Confidence 35556666776665 578999999999999988864
No 204
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=95.28 E-value=0.044 Score=34.03 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=19.5
Q ss_pred ceEEEEE-CCEEEEEEe--eC--------CCcEEEEECCCCCChhhH
Q 043205 5 QHRIVKV-NGINMHVAE--KG--------QGPVILFLHGFPELWYSW 40 (207)
Q Consensus 5 ~~~~v~~-~g~~i~~~~--~g--------~~~~lvllHG~~~~~~~~ 40 (207)
+++.|.+ ||.-+.... .+ ++|+|++.||+.+++..|
T Consensus 13 E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 13 EEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred EEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 3455544 787766542 12 268999999999999888
No 205
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=95.18 E-value=0.06 Score=47.73 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=57.6
Q ss_pred CcEEEEECCCC---CChhhHHHH--HHHHHhCCCEEEEeCCC----CC---------------ChhhhHHHHHHHHHHhC
Q 043205 24 GPVILFLHGFP---ELWYSWRHQ--ITALASLGYRAVAPDLR----GY---------------TCFHGIADLVGLIDIVA 79 (207)
Q Consensus 24 ~~~lvllHG~~---~~~~~~~~~--~~~l~~~g~~v~~~D~~----G~---------------~~~~~~~~~~~~~~~l~ 79 (207)
-|++|++||.+ +++..+... ...+...+.-|+.+.+| |+ +...-.+++.+-+...+
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FG 191 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFG 191 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 48999999975 333223111 22222223444444433 12 11222455666666677
Q ss_pred CCCCcEEEEEeChhHHHHHHHHHh--CCcccceEEEeccCCC
Q 043205 80 PNDEKMFVVGHDWGAFMAWFLCLF--RPDRVKALVNMSVTFD 119 (207)
Q Consensus 80 ~~~~~~~lvGhS~Gg~ia~~~a~~--~p~~v~~lv~~~~~~~ 119 (207)
.+.+++.++|||.||..+..+... ....+.+.|.+++...
T Consensus 192 Gdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~~ 233 (545)
T KOG1516|consen 192 GDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNAL 233 (545)
T ss_pred CCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccccc
Confidence 667899999999999998777643 2246777787776654
No 206
>PLN02802 triacylglycerol lipase
Probab=95.00 E-value=0.043 Score=47.78 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 67 GIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
+.+.+..+++.......++++.|||+||.+|..+|..
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 3445566666554212478999999999999887754
No 207
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=94.88 E-value=0.13 Score=49.11 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEe-CCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHH
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAP-DLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLC 101 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~-D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a 101 (207)
+.|+++|+|-.-+.......++..|.-.-|-.-+- ..|--+++..++....-+++++. ..|+.++|.|+|+.++..+|
T Consensus 2122 e~~~~Ffv~pIEG~tt~l~~la~rle~PaYglQ~T~~vP~dSies~A~~yirqirkvQP-~GPYrl~GYSyG~~l~f~ma 2200 (2376)
T KOG1202|consen 2122 EEPPLFFVHPIEGFTTALESLASRLEIPAYGLQCTEAVPLDSIESLAAYYIRQIRKVQP-EGPYRLAGYSYGACLAFEMA 2200 (2376)
T ss_pred cCCceEEEeccccchHHHHHHHhhcCCcchhhhccccCCcchHHHHHHHHHHHHHhcCC-CCCeeeeccchhHHHHHHHH
Confidence 47999999999888887777666553211111111 11222777788877777788775 57999999999999999998
Q ss_pred Hh--CCcccceEEEeccCCC
Q 043205 102 LF--RPDRVKALVNMSVTFD 119 (207)
Q Consensus 102 ~~--~p~~v~~lv~~~~~~~ 119 (207)
.. ..+....+|++++++.
T Consensus 2201 ~~Lqe~~~~~~lillDGspt 2220 (2376)
T KOG1202|consen 2201 SQLQEQQSPAPLILLDGSPT 2220 (2376)
T ss_pred HHHHhhcCCCcEEEecCchH
Confidence 64 2334567899987653
No 208
>PLN03037 lipase class 3 family protein; Provisional
Probab=94.74 E-value=0.052 Score=47.42 Aligned_cols=36 Identities=14% Similarity=0.344 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHHH
Q 043205 67 GIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 67 ~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
+.+++..+++.+.. ...++++.|||+||.+|...|.
T Consensus 300 Vl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 300 VMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHH
Confidence 45566777766642 1347999999999999988774
No 209
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=94.42 E-value=0.16 Score=45.56 Aligned_cols=94 Identities=15% Similarity=0.269 Sum_probs=59.5
Q ss_pred CCCcEEEEECCCCCChh--hHHHHHHHHHhCCCEEEEeCCCCC--------------ChhhhHHHHHHHHHHhCC----C
Q 043205 22 GQGPVILFLHGFPELWY--SWRHQITALASLGYRAVAPDLRGY--------------TCFHGIADLVGLIDIVAP----N 81 (207)
Q Consensus 22 g~~~~lvllHG~~~~~~--~~~~~~~~l~~~g~~v~~~D~~G~--------------~~~~~~~~~~~~~~~l~~----~ 81 (207)
|+.|.+|.--|.-+... .+....-.|.++|+--...-.||= ......+|+.+..++|-. .
T Consensus 446 g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~ 525 (682)
T COG1770 446 GSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTS 525 (682)
T ss_pred CCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCC
Confidence 34677777777533322 233333345567876555555662 222333444444444422 2
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcccceEEEec
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMS 115 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~ 115 (207)
.+.+++.|-|.||++.-..+...|+.++++|.--
T Consensus 526 ~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~V 559 (682)
T COG1770 526 PDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQV 559 (682)
T ss_pred ccceEEeccCchhHHHHHHHhhChhhhhheeecC
Confidence 5689999999999999999999999999988654
No 210
>PLN02753 triacylglycerol lipase
Probab=94.10 E-value=0.094 Score=45.90 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhCCC---CCcEEEEEeChhHHHHHHHHH
Q 043205 67 GIADLVGLIDIVAPN---DEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~---~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
+.+.+..+++..+.. ..++++.|||+||.+|...|.
T Consensus 293 Vl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 293 ILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred HHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHH
Confidence 344555666655421 358999999999999998875
No 211
>PLN02761 lipase class 3 family protein
Probab=94.10 E-value=0.096 Score=45.81 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhC---C-CCCcEEEEEeChhHHHHHHHHH
Q 043205 67 GIADLVGLIDIVA---P-NDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 67 ~~~~~~~~~~~l~---~-~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
+.+.+..+++... + ...++++.|||+||.+|...|.
T Consensus 274 Vl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 274 VLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 4455566666552 1 1347999999999999987774
No 212
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=93.86 E-value=0.83 Score=35.91 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=57.7
Q ss_pred EEEEECCCCCChh-hHHHHHHHHHhCCCEEEEeCCCCC-------ChhhhHHHHHHHHHHhCCCC-CcEEEEEeChhHHH
Q 043205 26 VILFLHGFPELWY-SWRHQITALASLGYRAVAPDLRGY-------TCFHGIADLVGLIDIVAPND-EKMFVVGHDWGAFM 96 (207)
Q Consensus 26 ~lvllHG~~~~~~-~~~~~~~~l~~~g~~v~~~D~~G~-------~~~~~~~~~~~~~~~l~~~~-~~~~lvGhS~Gg~i 96 (207)
|+|++-||.+... ......+...+.|++++.+-.+-. .....++.+.+.+....... .++++-..|.||..
T Consensus 1 plvvl~gW~gA~~~hl~KY~~~Y~~~g~~il~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~il~H~FSnGG~~ 80 (240)
T PF05705_consen 1 PLVVLLGWMGAKPKHLAKYSDLYQDPGFDILLVTSPPADFFWPSKRLAPAADKLLELLSDSQSASPPPILFHSFSNGGSF 80 (240)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEeCCHHHHeeeccchHHHHHHHHHHhhhhccCCCCCEEEEEEECchHH
Confidence 5677788876554 334445555557999988866554 23334444444444444222 28999999998887
Q ss_pred HHHHHHh-----C--C---cccceEEEeccCCCC
Q 043205 97 AWFLCLF-----R--P---DRVKALVNMSVTFDH 120 (207)
Q Consensus 97 a~~~a~~-----~--p---~~v~~lv~~~~~~~~ 120 (207)
....... . . .+++++|+-++|...
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~ 114 (240)
T PF05705_consen 81 LYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIP 114 (240)
T ss_pred HHHHHHHHHHhcccccccccccceeEEeCCCCcc
Confidence 6655331 1 1 237888887776543
No 213
>PLN02719 triacylglycerol lipase
Probab=93.84 E-value=0.1 Score=45.49 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhCC---CCCcEEEEEeChhHHHHHHHHH
Q 043205 67 GIADLVGLIDIVAP---NDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 67 ~~~~~~~~~~~l~~---~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
+.+.+..+++.... ...++++.|||+||.+|..+|.
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHH
Confidence 34445555555541 1247999999999999998775
No 214
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=93.68 E-value=0.11 Score=43.27 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh----CC--cccceEEEeccC
Q 043205 65 FHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF----RP--DRVKALVNMSVT 117 (207)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~----~p--~~v~~lv~~~~~ 117 (207)
..+.+++..+++... .-++.+.|||+||.+|..+|.. .. ....+++..+.|
T Consensus 155 ~~~~~~~~~L~~~~~--~~~i~vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~P 211 (336)
T KOG4569|consen 155 SGLDAELRRLIELYP--NYSIWVTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQP 211 (336)
T ss_pred HHHHHHHHHHHHhcC--CcEEEEecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecCC
Confidence 467778888888888 6789999999999999887753 22 123355666544
No 215
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.063 Score=47.80 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCcEEEEECCCCCCh--hhHHHHHHHHHhCCCEEEEeCCCCC--------------ChhhhHHHHHHHHHHhCC----CC
Q 043205 23 QGPVILFLHGFPELW--YSWRHQITALASLGYRAVAPDLRGY--------------TCFHGIADLVGLIDIVAP----ND 82 (207)
Q Consensus 23 ~~~~lvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~--------------~~~~~~~~~~~~~~~l~~----~~ 82 (207)
++|.+|..+|.-+-+ -.|+.---.|.+.|+-....|.||= ......+|.....+.|-+ +.
T Consensus 469 ~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~ 548 (712)
T KOG2237|consen 469 SKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQP 548 (712)
T ss_pred CCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCc
Confidence 467777777643222 2343333344557888888888883 122233444433333322 36
Q ss_pred CcEEEEEeChhHHHHHHHHHhCCcccceEEEe
Q 043205 83 EKMFVVGHDWGAFMAWFLCLFRPDRVKALVNM 114 (207)
Q Consensus 83 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~ 114 (207)
.+..+.|.|.||.++-.++...|+.+.++|+=
T Consensus 549 ~kL~i~G~SaGGlLvga~iN~rPdLF~avia~ 580 (712)
T KOG2237|consen 549 SKLAIEGGSAGGLLVGACINQRPDLFGAVIAK 580 (712)
T ss_pred cceeEecccCccchhHHHhccCchHhhhhhhc
Confidence 78999999999999999999999988877753
No 216
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=93.11 E-value=0.24 Score=42.15 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=69.1
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-------------ChhhhHHHHHHHHHHhCCC-CCcEEEE
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-------------TCFHGIADLVGLIDIVAPN-DEKMFVV 88 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-------------~~~~~~~~~~~~~~~l~~~-~~~~~lv 88 (207)
.+|+|+..-|++-+..-.+.-...|.+ -+-+.+++|=+ ++.+-+.|...+++.++.- .++++--
T Consensus 62 drPtV~~T~GY~~~~~p~r~Ept~Lld--~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kWIST 139 (448)
T PF05576_consen 62 DRPTVLYTEGYNVSTSPRRSEPTQLLD--GNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPGKWIST 139 (448)
T ss_pred CCCeEEEecCcccccCccccchhHhhc--cceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccCCceec
Confidence 378899999987765433333334433 34444544444 8889999999999988652 5689999
Q ss_pred EeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 89 GHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 89 GhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
|.|-||+.++.+=..||+-|++.|.--.|.
T Consensus 140 G~SKGGmTa~y~rrFyP~DVD~tVaYVAP~ 169 (448)
T PF05576_consen 140 GGSKGGMTAVYYRRFYPDDVDGTVAYVAPN 169 (448)
T ss_pred CcCCCceeEEEEeeeCCCCCCeeeeeeccc
Confidence 999999999998888999999988655443
No 217
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.41 Score=42.56 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=34.0
Q ss_pred HHHHHHHHhCC-CCCcEEEEEeChhHHHHHHHHHh-----CCc------ccceEEEeccCCCC
Q 043205 70 DLVGLIDIVAP-NDEKMFVVGHDWGAFMAWFLCLF-----RPD------RVKALVNMSVTFDH 120 (207)
Q Consensus 70 ~~~~~~~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~-----~p~------~v~~lv~~~~~~~~ 120 (207)
.+.+.+++.+- +..+++.+||||||.++-.+... .|+ ..+++|+++.|...
T Consensus 512 ~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PHrG 574 (697)
T KOG2029|consen 512 ELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPHRG 574 (697)
T ss_pred HHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCCCC
Confidence 33344444432 25689999999999998766543 232 46789999988653
No 218
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=92.72 E-value=0.54 Score=36.97 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=34.7
Q ss_pred ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC-----c-ccceEEEeccCC
Q 043205 63 TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP-----D-RVKALVNMSVTF 118 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p-----~-~v~~lv~~~~~~ 118 (207)
+..+-++.+.+.++......++++++|+|+|+.++...+.+.- . ..-.+|+++-+.
T Consensus 28 Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~fVl~gnP~ 89 (225)
T PF08237_consen 28 SVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLSFVLIGNPR 89 (225)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceEEEEecCCC
Confidence 4444555555555542213578999999999999987765431 1 133567776543
No 219
>PLN02847 triacylglycerol lipase
Probab=92.64 E-value=0.21 Score=44.51 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=18.8
Q ss_pred CCcEEEEEeChhHHHHHHHHHh
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
.-+++++|||+||.+|..++..
T Consensus 250 dYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 250 DFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCeEEEeccChHHHHHHHHHHH
Confidence 4589999999999999887754
No 220
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=92.21 E-value=0.28 Score=43.66 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=57.1
Q ss_pred CcEEEEECCCC----CChh--hHHHHHHHHHhCCCEEEEeCCCCC----ChhhhHHHHHHHHH--------HhCCCCCcE
Q 043205 24 GPVILFLHGFP----ELWY--SWRHQITALASLGYRAVAPDLRGY----TCFHGIADLVGLID--------IVAPNDEKM 85 (207)
Q Consensus 24 ~~~lvllHG~~----~~~~--~~~~~~~~l~~~g~~v~~~D~~G~----~~~~~~~~~~~~~~--------~l~~~~~~~ 85 (207)
.|.++++||.+ .+.+ .|........+. ..+-.+|++-- ++.+-++.+..+.+ ++. ..++
T Consensus 176 spl~i~aps~p~ap~tSd~~~~wqs~lsl~gev-vev~tfdl~n~igG~nI~h~ae~~vSf~r~kvlei~gefp--ha~I 252 (784)
T KOG3253|consen 176 SPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEV-VEVPTFDLNNPIGGANIKHAAEYSVSFDRYKVLEITGEFP--HAPI 252 (784)
T ss_pred CceEEeccCCCCCCccchHHHhHHHHHhhhcee-eeeccccccCCCCCcchHHHHHHHHHHhhhhhhhhhccCC--CCce
Confidence 57899999987 1112 233333333322 45566666643 44444444433333 222 5689
Q ss_pred EEEEeChhHHHHHHHHHh-CCcccceEEEeccCCC
Q 043205 86 FVVGHDWGAFMAWFLCLF-RPDRVKALVNMSVTFD 119 (207)
Q Consensus 86 ~lvGhS~Gg~ia~~~a~~-~p~~v~~lv~~~~~~~ 119 (207)
+|+|.|+|+.++.+.+.. ....|+++|+++-+..
T Consensus 253 iLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~ 287 (784)
T KOG3253|consen 253 ILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD 287 (784)
T ss_pred EEEecccCceeeEEeccccCCceEEEEEEeccccc
Confidence 999999999888887754 3345999999986654
No 221
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=91.99 E-value=0.17 Score=44.94 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=72.8
Q ss_pred EEECCEEEEEEeeC------CCcEEEEECCCCCCh--hhHHHHHHHHHhCCCEEEEeCCCCC--------------Chhh
Q 043205 9 VKVNGINMHVAEKG------QGPVILFLHGFPELW--YSWRHQITALASLGYRAVAPDLRGY--------------TCFH 66 (207)
Q Consensus 9 v~~~g~~i~~~~~g------~~~~lvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~--------------~~~~ 66 (207)
+..||++|.|...+ +.|++|.--|.-.-+ -.|........++|...+..+.||= .-+.
T Consensus 400 tSkDGT~IPYFiv~K~~~~d~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~ 479 (648)
T COG1505 400 TSKDGTRIPYFIVRKGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQN 479 (648)
T ss_pred EcCCCccccEEEEecCCcCCCCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchh
Confidence 34489999986542 146666555432111 1233333445566888899999993 4555
Q ss_pred hHHHHHHHHHHhCCC----CCcEEEEEeChhHHHHHHHHHhCCcccceEEEec
Q 043205 67 GIADLVGLIDIVAPN----DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMS 115 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~ 115 (207)
..+|..++.+.|..+ .+++.+-|-|-||.+.-.+..++|+.+.++|+--
T Consensus 480 vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~ev 532 (648)
T COG1505 480 VFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEV 532 (648)
T ss_pred hhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeecc
Confidence 667777777777532 3478899999999998888889999888777543
No 222
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=88.30 E-value=5.4 Score=34.61 Aligned_cols=111 Identities=12% Similarity=0.147 Sum_probs=64.2
Q ss_pred EEEEEC---CEEEEEEeeC------CCcEEEEECCCCCChhhHHHHH---H-------------HHHhC------CCEEE
Q 043205 7 RIVKVN---GINMHVAEKG------QGPVILFLHGFPELWYSWRHQI---T-------------ALASL------GYRAV 55 (207)
Q Consensus 7 ~~v~~~---g~~i~~~~~g------~~~~lvllHG~~~~~~~~~~~~---~-------------~l~~~------g~~v~ 55 (207)
.++.++ +..++|.-.. +.|.++.+-|.++++..+..+. + .+..+ -.+++
T Consensus 40 Gy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anll 119 (433)
T PLN03016 40 GYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANII 119 (433)
T ss_pred EEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcEE
Confidence 356664 3566665322 2689999999998887543222 1 11111 25688
Q ss_pred EeCCC-C--CC----------hhhhHHHHHHHHHH----hCC-CCCcEEEEEeChhHHHHHHHHHh----C------Ccc
Q 043205 56 APDLR-G--YT----------CFHGIADLVGLIDI----VAP-NDEKMFVVGHDWGAFMAWFLCLF----R------PDR 107 (207)
Q Consensus 56 ~~D~~-G--~~----------~~~~~~~~~~~~~~----l~~-~~~~~~lvGhS~Gg~ia~~~a~~----~------p~~ 107 (207)
-+|.| | +| -...++++..+++. ... ...+++++|.|.||..+..+|.. . +-.
T Consensus 120 fiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~in 199 (433)
T PLN03016 120 FLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPIN 199 (433)
T ss_pred EecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccc
Confidence 88855 2 31 11223444444443 222 25689999999999877777653 1 124
Q ss_pred cceEEEeccC
Q 043205 108 VKALVNMSVT 117 (207)
Q Consensus 108 v~~lv~~~~~ 117 (207)
++++++-++-
T Consensus 200 LkGi~iGNg~ 209 (433)
T PLN03016 200 LQGYMLGNPV 209 (433)
T ss_pred ceeeEecCCC
Confidence 6777776653
No 223
>PLN02209 serine carboxypeptidase
Probab=87.87 E-value=6.5 Score=34.15 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=64.9
Q ss_pred EEEEC---CEEEEEEeeC------CCcEEEEECCCCCChhhHHHHHH----------------HHHhC------CCEEEE
Q 043205 8 IVKVN---GINMHVAEKG------QGPVILFLHGFPELWYSWRHQIT----------------ALASL------GYRAVA 56 (207)
Q Consensus 8 ~v~~~---g~~i~~~~~g------~~~~lvllHG~~~~~~~~~~~~~----------------~l~~~------g~~v~~ 56 (207)
++.++ +..+.|.-.. +.|+++.+-|.++++..+..+.+ .+..+ -.+++-
T Consensus 43 y~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllf 122 (437)
T PLN02209 43 YIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIF 122 (437)
T ss_pred EEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEE
Confidence 56664 3556654322 26999999999998876644321 11111 246778
Q ss_pred eCCC---CC----------ChhhhHHHHHHHHHHh----CC-CCCcEEEEEeChhHHHHHHHHHh----C------Cccc
Q 043205 57 PDLR---GY----------TCFHGIADLVGLIDIV----AP-NDEKMFVVGHDWGAFMAWFLCLF----R------PDRV 108 (207)
Q Consensus 57 ~D~~---G~----------~~~~~~~~~~~~~~~l----~~-~~~~~~lvGhS~Gg~ia~~~a~~----~------p~~v 108 (207)
+|.| |+ +.++.++++.++++.. .. ...++++.|.|.||..+..+|.. . +-.+
T Consensus 123 iDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl 202 (437)
T PLN02209 123 LDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINL 202 (437)
T ss_pred ecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceee
Confidence 8855 23 1123445555555442 21 24589999999999877766643 1 1245
Q ss_pred ceEEEeccC
Q 043205 109 KALVNMSVT 117 (207)
Q Consensus 109 ~~lv~~~~~ 117 (207)
+++++.++-
T Consensus 203 ~Gi~igng~ 211 (437)
T PLN02209 203 QGYVLGNPI 211 (437)
T ss_pred eeEEecCcc
Confidence 677777653
No 224
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=85.41 E-value=5.3 Score=35.04 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=56.8
Q ss_pred CcEEEEECCCCCChhhHHHHHHH----HHh--------C------CCEEEEeCCC-C--C----------ChhhhHHHHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITA----LAS--------L------GYRAVAPDLR-G--Y----------TCFHGIADLV 72 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~----l~~--------~------g~~v~~~D~~-G--~----------~~~~~~~~~~ 72 (207)
+|.++.+-|.+|++..|-.+.+. +.. + .-.++-+|+| | | +.....+|+.
T Consensus 101 rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~e~~~d~~~~~~D~~ 180 (498)
T COG2939 101 RPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGDEKKKDFEGAGKDVY 180 (498)
T ss_pred CceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCcccccccccccchhccchhHH
Confidence 68999999999999888665321 000 0 1246777743 2 2 2333445544
Q ss_pred HHHH-------HhCCCCCcEEEEEeChhHHHHHHHHHhCCc---ccceEEEecc
Q 043205 73 GLID-------IVAPNDEKMFVVGHDWGAFMAWFLCLFRPD---RVKALVNMSV 116 (207)
Q Consensus 73 ~~~~-------~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~---~v~~lv~~~~ 116 (207)
.+.+ +......+.+|+|-|+||.-+..+|..--+ ..++++.+++
T Consensus 181 ~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlss 234 (498)
T COG2939 181 SFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSS 234 (498)
T ss_pred HHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeee
Confidence 4333 333123489999999999998888864322 3556665543
No 225
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=85.03 E-value=20 Score=29.55 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=64.6
Q ss_pred CcEEEEECCCCCC-hhhHHHHHHHHHhCCCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCCCCCcEEEEEeCh
Q 043205 24 GPVILFLHGFPEL-WYSWRHQITALASLGYRAVAPDLRGY----------TCFHGIADLVGLIDIVAPNDEKMFVVGHDW 92 (207)
Q Consensus 24 ~~~lvllHG~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~ 92 (207)
.|.++++--+.+. +...+..++.|... ..|+..|+-.. +.+++.+.+.++++.++. ..++++-+.
T Consensus 103 dPkvLivapmsGH~aTLLR~TV~alLp~-~~vyitDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~Gp---~~hv~aVCQ 178 (415)
T COG4553 103 DPKVLIVAPMSGHYATLLRGTVEALLPY-HDVYITDWVDARMVPLEAGHFDLDDYIDYVIEMINFLGP---DAHVMAVCQ 178 (415)
T ss_pred CCeEEEEecccccHHHHHHHHHHHhccc-cceeEeeccccceeecccCCccHHHHHHHHHHHHHHhCC---CCcEEEEec
Confidence 3566666666554 44556667777663 77888887654 788899999999999993 366666665
Q ss_pred hHH-----HHHHHHHhCCcccceEEEeccCCCC
Q 043205 93 GAF-----MAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 93 Gg~-----ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
=+. +++..+...|.....++++++|...
T Consensus 179 P~vPvLAAisLM~~~~~p~~PssMtlmGgPIDa 211 (415)
T COG4553 179 PTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDA 211 (415)
T ss_pred CCchHHHHHHHHHhcCCCCCCceeeeecCcccc
Confidence 543 3334444567778899999988764
No 226
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=84.42 E-value=2.2 Score=34.77 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.6
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
..++.+.|||+||.+|..+-.++.
T Consensus 275 da~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 275 DARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred CceEEEeccccchHHHHHhccccC
Confidence 467999999999999988887764
No 227
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=84.42 E-value=2.2 Score=34.77 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.6
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
..++.+.|||+||.+|..+-.++.
T Consensus 275 da~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 275 DARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred CceEEEeccccchHHHHHhccccC
Confidence 467999999999999988887764
No 228
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=84.32 E-value=4.9 Score=35.02 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=65.4
Q ss_pred EEEEEC---CEEEEEEeeC------CCcEEEEECCCCCChhhHHHHHHHHH-----hC-------------CCEEEEeCC
Q 043205 7 RIVKVN---GINMHVAEKG------QGPVILFLHGFPELWYSWRHQITALA-----SL-------------GYRAVAPDL 59 (207)
Q Consensus 7 ~~v~~~---g~~i~~~~~g------~~~~lvllHG~~~~~~~~~~~~~~l~-----~~-------------g~~v~~~D~ 59 (207)
.++.++ +..++|+-.. .+|.||.+-|.+|.+..- -++..+- .. --+++-+|.
T Consensus 47 GYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~ 125 (454)
T KOG1282|consen 47 GYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQ 125 (454)
T ss_pred ceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCccccccccEEEEec
Confidence 367776 6788886332 268999999998877543 2211110 00 134666676
Q ss_pred CC---C-----------ChhhhHHHHHHHH----HHhCC-CCCcEEEEEeChhHHHHHHHHHh----C-----C-cccce
Q 043205 60 RG---Y-----------TCFHGIADLVGLI----DIVAP-NDEKMFVVGHDWGAFMAWFLCLF----R-----P-DRVKA 110 (207)
Q Consensus 60 ~G---~-----------~~~~~~~~~~~~~----~~l~~-~~~~~~lvGhS~Gg~ia~~~a~~----~-----p-~~v~~ 110 (207)
|- + +-+..++|...++ ++..+ ...++.+.|-|.+|.....+|.. . | -.+++
T Consensus 126 PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG 205 (454)
T KOG1282|consen 126 PVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKG 205 (454)
T ss_pred CCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceE
Confidence 63 2 2333455554443 33322 25789999999999887777653 2 1 24566
Q ss_pred EEEeccCC
Q 043205 111 LVNMSVTF 118 (207)
Q Consensus 111 lv~~~~~~ 118 (207)
+++-++-.
T Consensus 206 ~~IGNg~t 213 (454)
T KOG1282|consen 206 YAIGNGLT 213 (454)
T ss_pred EEecCccc
Confidence 66655443
No 229
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=84.03 E-value=2.1 Score=37.55 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHh-CCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 73 GLIDIV-APNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 73 ~~~~~l-~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
++++.+ +...+.-+..|.|-||.-++..|.+||+.+++++.-+|+.
T Consensus 104 ~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~ 150 (474)
T PF07519_consen 104 ALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAI 150 (474)
T ss_pred HHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchH
Confidence 344443 4335667899999999999999999999999999888764
No 230
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.88 E-value=1.3 Score=38.82 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCcEEEEEeChhHHHHHHHHHh-----CCcccceEEEeccCCCCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLF-----RPDRVKALVNMSVTFDHF 121 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~-----~p~~v~~lv~~~~~~~~~ 121 (207)
..|+.|||+|+|+.+...+... .-..|..++++++|....
T Consensus 446 ~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k 490 (633)
T KOG2385|consen 446 NRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTK 490 (633)
T ss_pred CCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCC
Confidence 6899999999999998877652 224688899999887653
No 231
>PRK12467 peptide synthase; Provisional
Probab=80.73 E-value=6.9 Score=43.25 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=64.2
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC--------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY--------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~--------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
+.+++.|...++...+..+...+.. +..++.+..++. +++.++....+.+..... ..+..+.|+|+||.+
T Consensus 3693 ~~l~~~h~~~r~~~~~~~l~~~l~~-~~~~~~l~~~~~~~d~~~~~~~~~~~~~y~~~~~~~~~-~~p~~l~g~s~g~~~ 3770 (3956)
T PRK12467 3693 PALFCRHEGLGTVFDYEPLAVILEG-DRHVLGLTCRHLLDDGWQDTSLQAMAVQYADYILWQQA-KGPYGLLGWSLGGTL 3770 (3956)
T ss_pred cceeeechhhcchhhhHHHHHHhCC-CCcEEEEeccccccccCCccchHHHHHHHHHHHHHhcc-CCCeeeeeeecchHH
Confidence 5699999998888777777777755 477777766654 555666666666666653 468999999999999
Q ss_pred HHHHHHh---CCcccceEEEec
Q 043205 97 AWFLCLF---RPDRVKALVNMS 115 (207)
Q Consensus 97 a~~~a~~---~p~~v~~lv~~~ 115 (207)
+..++.. ..+.+.-+.++.
T Consensus 3771 a~~~~~~l~~~g~~~~~~~~~~ 3792 (3956)
T PRK12467 3771 ARLVAELLEREGESEAFLGLFD 3792 (3956)
T ss_pred HHHHHHHHHHcCCceeEEEEEe
Confidence 9888754 334455554553
No 232
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=80.32 E-value=11 Score=31.93 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=54.9
Q ss_pred cEEEEECCCCCC-------hhhHHHHHHHHHhCCCEEEEeC--CCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHH
Q 043205 25 PVILFLHGFPEL-------WYSWRHQITALASLGYRAVAPD--LRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAF 95 (207)
Q Consensus 25 ~~lvllHG~~~~-------~~~~~~~~~~l~~~g~~v~~~D--~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ 95 (207)
..||++||.+.+ ...|..++..+.++++ +-.+| +.|+.- .+.+|...+...+. ..+-.++..|+.-.
T Consensus 172 ~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~l-ip~~D~AYQGF~~-GleeDa~~lR~~a~--~~~~~lva~S~SKn 247 (396)
T COG1448 172 GSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGL-IPFFDIAYQGFAD-GLEEDAYALRLFAE--VGPELLVASSFSKN 247 (396)
T ss_pred CCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeeeehhhhhhcc-chHHHHHHHHHHHH--hCCcEEEEehhhhh
Confidence 479999998754 5689999999988754 33445 455411 14445444444443 33348889888766
Q ss_pred HHHHHHHhCCcccceEEEecc
Q 043205 96 MAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 96 ia~~~a~~~p~~v~~lv~~~~ 116 (207)
.+ .|.+||-++.+++.
T Consensus 248 fg-----LYgERVGa~~vva~ 263 (396)
T COG1448 248 FG-----LYGERVGALSVVAE 263 (396)
T ss_pred hh-----hhhhccceeEEEeC
Confidence 65 46789999988863
No 233
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=80.18 E-value=16 Score=24.84 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhCCCEEEEeCCCCC----------Chh-hhHHHHHHHHHHhCCCCCcEEEEEeChhH--HHHHHHHHh
Q 043205 37 WYSWRHQITALASLGYRAVAPDLRGY----------TCF-HGIADLVGLIDIVAPNDEKMFVVGHDWGA--FMAWFLCLF 103 (207)
Q Consensus 37 ~~~~~~~~~~l~~~g~~v~~~D~~G~----------~~~-~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg--~ia~~~a~~ 103 (207)
+..+..+...+..+|+..=.+.++.+ ... .=...+.++++.+. ..++++||-|--. -+-..+|.+
T Consensus 10 wnly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP--~~kfiLIGDsgq~DpeiY~~ia~~ 87 (100)
T PF09949_consen 10 WNLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFP--ERKFILIGDSGQHDPEIYAEIARR 87 (100)
T ss_pred HHHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCC--CCcEEEEeeCCCcCHHHHHHHHHH
Confidence 34455556666666665444444443 111 22345677788887 7899999976443 333467888
Q ss_pred CCcccceEEE
Q 043205 104 RPDRVKALVN 113 (207)
Q Consensus 104 ~p~~v~~lv~ 113 (207)
+|++|.++.+
T Consensus 88 ~P~~i~ai~I 97 (100)
T PF09949_consen 88 FPGRILAIYI 97 (100)
T ss_pred CCCCEEEEEE
Confidence 9999998864
No 234
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=79.95 E-value=3 Score=37.38 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=53.3
Q ss_pred cEEEEECCCCC---ChhhHHHHHH-HHHhCCCEEEEeCCCCC---ChhhhHH-------HHHHHHHHhCCCCCcEEEEEe
Q 043205 25 PVILFLHGFPE---LWYSWRHQIT-ALASLGYRAVAPDLRGY---TCFHGIA-------DLVGLIDIVAPNDEKMFVVGH 90 (207)
Q Consensus 25 ~~lvllHG~~~---~~~~~~~~~~-~l~~~g~~v~~~D~~G~---~~~~~~~-------~~~~~~~~l~~~~~~~~lvGh 90 (207)
-.|+=+||.|. ++..-..... ...+.|+.|+.+|+.=. -...-.+ ++..-.+.++...++++++|-
T Consensus 397 sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~fAYcW~inn~allG~TgEriv~aGD 476 (880)
T KOG4388|consen 397 SLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPEAPFPRALEEVFFAYCWAINNCALLGSTGERIVLAGD 476 (880)
T ss_pred eEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHHHHHHHHhcCHHHhCcccceEEEecc
Confidence 36888898763 2222222222 22344899999997543 1111111 122222345655789999999
Q ss_pred ChhHHHHHHHHHh----CCcccceEEEeccCC
Q 043205 91 DWGAFMAWFLCLF----RPDRVKALVNMSVTF 118 (207)
Q Consensus 91 S~Gg~ia~~~a~~----~p~~v~~lv~~~~~~ 118 (207)
|.||.+.+..+.+ .-...+++++.-+|.
T Consensus 477 SAGgNL~~~VaLr~i~~gvRvPDGl~laY~pt 508 (880)
T KOG4388|consen 477 SAGGNLCFTVALRAIAYGVRVPDGLMLAYPPT 508 (880)
T ss_pred CCCcceeehhHHHHHHhCCCCCCceEEecChh
Confidence 9999987666543 222346777665554
No 235
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=77.30 E-value=13 Score=28.59 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=47.2
Q ss_pred HHHHhCCC-EEEEeCCCCC---ChhhhHHHHHHHHHHhCCCCCcEEEEEeCh----hHHHHHHHHHhCC-cccceEEEe
Q 043205 45 TALASLGY-RAVAPDLRGY---TCFHGIADLVGLIDIVAPNDEKMFVVGHDW----GAFMAWFLCLFRP-DRVKALVNM 114 (207)
Q Consensus 45 ~~l~~~g~-~v~~~D~~G~---~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~----Gg~ia~~~a~~~p-~~v~~lv~~ 114 (207)
..+...|. +|+..|.++. +.+.+++-+.+++++.+ ..++++|+|. |..++.++|.+.. ..+..++.+
T Consensus 70 ~~l~~~G~d~V~~~~~~~~~~~~~e~~a~al~~~i~~~~---p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l 145 (202)
T cd01714 70 REALAMGADRAILVSDRAFAGADTLATAKALAAAIKKIG---VDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKI 145 (202)
T ss_pred HHHHHcCCCEEEEEecccccCCChHHHHHHHHHHHHHhC---CCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEE
Confidence 33444565 6888777754 67788888888887766 4799999998 8899999987642 244445444
No 236
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=76.34 E-value=39 Score=28.31 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=48.7
Q ss_pred CcEEEEECCCC----CC-hhhHHHHHHHHHh-CCCEEEEeCCCCC------------------C-----hhhhHHHHH--
Q 043205 24 GPVILFLHGFP----EL-WYSWRHQITALAS-LGYRAVAPDLRGY------------------T-----CFHGIADLV-- 72 (207)
Q Consensus 24 ~~~lvllHG~~----~~-~~~~~~~~~~l~~-~g~~v~~~D~~G~------------------~-----~~~~~~~~~-- 72 (207)
+..|+|+-|-. .. ..+.-.+...|.+ .+..++++--+|- + -..+.+.|.
T Consensus 31 k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv~yYd~GVGt~Gfdavvdvrrrl~~~~~gsmFg~gL~~nI~~A 110 (423)
T COG3673 31 KRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQVIYYDEGVGTGGFDAVVDVRRRLEKLSGGSMFGQGLVQNIREA 110 (423)
T ss_pred ceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEEEEecCCcccccchhhHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 45777777742 22 2444556666665 4677788777775 0 011223333
Q ss_pred --HHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 73 --GLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 73 --~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
-++..... .+.|+++|+|-|++++.-+|..
T Consensus 111 YrFL~~~yep-GD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 111 YRFLIFNYEP-GDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHhcCC-CCeEEEeeccchhHHHHHHHHH
Confidence 33444433 5789999999999999888754
No 237
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=74.79 E-value=16 Score=26.03 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=32.8
Q ss_pred CCcEEEEECCCCCChhhH--HHHHHHHHhCCCE-------EEEeCCCCC-ChhhhHHHHHHHHHH
Q 043205 23 QGPVILFLHGFPELWYSW--RHQITALASLGYR-------AVAPDLRGY-TCFHGIADLVGLIDI 77 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~--~~~~~~l~~~g~~-------v~~~D~~G~-~~~~~~~~~~~~~~~ 77 (207)
++|.|+-+||++|++..+ +-+++.|-..|.. +...|.|-. .+..+.+++..++..
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~~ 115 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIRG 115 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHHH
Confidence 478999999999999887 3445555444422 222344432 445555566555543
No 238
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=74.14 E-value=7.9 Score=32.02 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHHH----hCC-CCCcEEEEEeChhHHHHHHHHHh----C------CcccceEEEeccC
Q 043205 68 IADLVGLIDI----VAP-NDEKMFVVGHDWGAFMAWFLCLF----R------PDRVKALVNMSVT 117 (207)
Q Consensus 68 ~~~~~~~~~~----l~~-~~~~~~lvGhS~Gg~ia~~~a~~----~------p~~v~~lv~~~~~ 117 (207)
++|+..+++. ... ...++++.|-|.||..+..+|.. . +-.++++++-++-
T Consensus 31 a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~~inLkGi~IGNg~ 95 (319)
T PLN02213 31 VKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPV 95 (319)
T ss_pred HHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccCCceeeeEEEeCCCC
Confidence 3555554443 222 26789999999999987777753 1 1145676666543
No 239
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=73.59 E-value=24 Score=27.65 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=39.1
Q ss_pred cEEEEECCCCCChh-hHHHHHHHHHhCCC-EEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEE
Q 043205 25 PVILFLHGFPELWY-SWRHQITALASLGY-RAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFV 87 (207)
Q Consensus 25 ~~lvllHG~~~~~~-~~~~~~~~l~~~g~-~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~l 87 (207)
.+|++.||....+. .|..+-..+.++|| +|+....-|| ...+++.+-++.-+ .+.+.|
T Consensus 139 ~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~y---P~~d~vi~~l~~~~--~~~v~L 198 (265)
T COG4822 139 ILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGY---PLVDTVIEYLRKNG--IKEVHL 198 (265)
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCC---CcHHHHHHHHHHcC--CceEEE
Confidence 48999999876554 56666667777888 7887777776 34456666666665 454444
No 240
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=73.42 E-value=4.2 Score=35.56 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=51.5
Q ss_pred EEEeeCC--CcEEEEECCCCC--ChhhHHHHHHHHHhCCCEEEE-eCCCCC------Chhh----hHHHHHHHHHHhCCC
Q 043205 17 HVAEKGQ--GPVILFLHGFPE--LWYSWRHQITALASLGYRAVA-PDLRGY------TCFH----GIADLVGLIDIVAPN 81 (207)
Q Consensus 17 ~~~~~g~--~~~lvllHG~~~--~~~~~~~~~~~l~~~g~~v~~-~D~~G~------~~~~----~~~~~~~~~~~l~~~ 81 (207)
+|..+|. .|..|.+.|+-. ....+ .+.. +.|...+. -|.|=. .-++ +.+-+.+.++.|+-+
T Consensus 280 yYFnPGD~KPPL~VYFSGyR~aEGFEgy-~MMk---~Lg~PfLL~~DpRleGGaFYlGs~eyE~~I~~~I~~~L~~LgF~ 355 (511)
T TIGR03712 280 YYFNPGDFKPPLNVYFSGYRPAEGFEGY-FMMK---RLGAPFLLIGDPRLEGGAFYLGSDEYEQGIINVIQEKLDYLGFD 355 (511)
T ss_pred EecCCcCCCCCeEEeeccCcccCcchhH-HHHH---hcCCCeEEeeccccccceeeeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 4445665 467788888743 11111 1222 33455433 355543 2222 334456667777766
Q ss_pred CCcEEEEEeChhHHHHHHHHHhC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
.+.+++-|-|||..-|+.++++.
T Consensus 356 ~~qLILSGlSMGTfgAlYYga~l 378 (511)
T TIGR03712 356 HDQLILSGLSMGTFGALYYGAKL 378 (511)
T ss_pred HHHeeeccccccchhhhhhcccC
Confidence 77899999999999999998874
No 241
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=73.38 E-value=13 Score=30.41 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=23.1
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCC
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G 61 (207)
|-|+|.-|.++. .+.+++.||.|+..|+.-
T Consensus 253 Pmi~fakG~g~~-------Le~l~~tG~DVvgLDWTv 282 (359)
T KOG2872|consen 253 PMILFAKGSGGA-------LEELAQTGYDVVGLDWTV 282 (359)
T ss_pred ceEEEEcCcchH-------HHHHHhcCCcEEeecccc
Confidence 678888776653 567788899999998754
No 242
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.03 E-value=24 Score=29.69 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=61.4
Q ss_pred CcEEEEECCCCCChhhH-HHHHHHHHhCCCEEEEeCCCCC-----------ChhhhHHHHHHHHHHhCCCCCcEEEEEeC
Q 043205 24 GPVILFLHGFPELWYSW-RHQITALASLGYRAVAPDLRGY-----------TCFHGIADLVGLIDIVAPNDEKMFVVGHD 91 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~-~~~~~~l~~~g~~v~~~D~~G~-----------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS 91 (207)
..+||++=||.+....| ........+.|+.++.+-.|-+ +.....+-+.+++.....+..++++--.|
T Consensus 38 ~k~Iv~~~gWag~~~r~l~ky~~~Yq~~g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~FS 117 (350)
T KOG2521|consen 38 EKPIVVLLGWAGAIDRNLMKYSKIYQDKGYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFHVFS 117 (350)
T ss_pred cccEEEEeeeccccchhHHHHHHHHhcCCceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEEEec
Confidence 33667777777666655 4445566677899888877776 33334455666666665446788888999
Q ss_pred hhHHHHHHHH-H---hC-C---cccceEEEeccCCC
Q 043205 92 WGAFMAWFLC-L---FR-P---DRVKALVNMSVTFD 119 (207)
Q Consensus 92 ~Gg~ia~~~a-~---~~-p---~~v~~lv~~~~~~~ 119 (207)
+||...+... . ++ | +...++++.+.+..
T Consensus 118 ~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~ 153 (350)
T KOG2521|consen 118 GNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPAR 153 (350)
T ss_pred CCceeehHHHHHHHhhcCchhHhhcCCceEeccccc
Confidence 9998876443 1 12 2 34556777765544
No 243
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=70.62 E-value=21 Score=27.92 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCCcEEEEECCCCCChhh--H-HHHHHHHHhCCCEEEEeCCCCC
Q 043205 22 GQGPVILFLHGFPELWYS--W-RHQITALASLGYRAVAPDLRGY 62 (207)
Q Consensus 22 g~~~~lvllHG~~~~~~~--~-~~~~~~l~~~g~~v~~~D~~G~ 62 (207)
|+++.|.||+-.+.+... | ......|.+.|+.+..+++---
T Consensus 30 g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~ 73 (224)
T COG3340 30 GKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP 73 (224)
T ss_pred CCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC
Confidence 346799999987766543 3 4556788888999888876554
No 244
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=70.52 E-value=25 Score=27.84 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=45.2
Q ss_pred CCcEEEEECCCC--CChhhH-HHHHHHHHhCCCEEEEeCCCCC----------------ChhhhHHH-----HHHHHH-H
Q 043205 23 QGPVILFLHGFP--ELWYSW-RHQITALASLGYRAVAPDLRGY----------------TCFHGIAD-----LVGLID-I 77 (207)
Q Consensus 23 ~~~~lvllHG~~--~~~~~~-~~~~~~l~~~g~~v~~~D~~G~----------------~~~~~~~~-----~~~~~~-~ 77 (207)
.+|.|+||+-.. .+...| ......+.+.|+.+..++...- +...+.+. +.+.++ .
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 468899999876 334444 4455677778999888876652 11111111 222232 2
Q ss_pred hCCCCCcEEEEEeChhHHHHHH
Q 043205 78 VAPNDEKMFVVGHDWGAFMAWF 99 (207)
Q Consensus 78 l~~~~~~~~lvGhS~Gg~ia~~ 99 (207)
+. +...++|.|.|++++..
T Consensus 110 ~~---~G~~~~G~SAGAii~~~ 128 (233)
T PRK05282 110 VK---NGTPYIGWSAGANVAGP 128 (233)
T ss_pred HH---CCCEEEEECHHHHhhhc
Confidence 32 34789999999988554
No 245
>PF03283 PAE: Pectinacetylesterase
Probab=68.76 E-value=55 Score=27.74 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=25.7
Q ss_pred CCcEEEEEeChhHHHHHHHHH----hCCcccceEEEeccCCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCL----FRPDRVKALVNMSVTFD 119 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~----~~p~~v~~lv~~~~~~~ 119 (207)
.++++|.|.|.||.-++..+. ..|..++-..+.++++.
T Consensus 155 a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f 196 (361)
T PF03283_consen 155 AKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFF 196 (361)
T ss_pred cceEEEeccChHHHHHHHHHHHHHHHhccCceEEEecccccc
Confidence 578999999999999886553 45644444444455444
No 246
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=67.14 E-value=4.7 Score=33.18 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
.++++..+ ..+-.++|||+|-+.|+.++.
T Consensus 75 ~~~l~~~G--i~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 75 ARLLRSWG--IKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp HHHHHHTT--HCESEEEESTTHHHHHHHHTT
T ss_pred hhhhcccc--cccceeeccchhhHHHHHHCC
Confidence 35556667 789999999999999887754
No 247
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=66.84 E-value=8.2 Score=31.19 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 73 GLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 73 ~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
++++..+ .++-.++|||+|-+.|+.++.
T Consensus 74 ~~l~~~G--i~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 74 RLWRSWG--VRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHcC--CcccEEEecCHHHHHHHHHhC
Confidence 4456666 678899999999999887764
No 248
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.94 E-value=35 Score=30.14 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=56.2
Q ss_pred EEECCCCCChhhH-HHHHHHHHhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh-
Q 043205 28 LFLHGFPELWYSW-RHQITALASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF- 103 (207)
Q Consensus 28 vllHG~~~~~~~~-~~~~~~l~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~- 103 (207)
+|--|++.+.... ..-+.+..++||.|+.+|-.|. .-+.+...+..++..-. .+.++.+|.-+=|.=+..-+.+
T Consensus 442 lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~--pd~i~~vgealvg~dsv~q~~~f 519 (587)
T KOG0781|consen 442 LFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNK--PDLILFVGEALVGNDSVDQLKKF 519 (587)
T ss_pred HHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCC--CceEEEehhhhhCcHHHHHHHHH
Confidence 4445666664433 4445666678999999999996 55566667777777666 6788889987777655544332
Q ss_pred --------CCcccceEEEe
Q 043205 104 --------RPDRVKALVNM 114 (207)
Q Consensus 104 --------~p~~v~~lv~~ 114 (207)
.|..++++++-
T Consensus 520 n~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 520 NRALADHSTPRLIDGILLT 538 (587)
T ss_pred HHHHhcCCCccccceEEEE
Confidence 23456666654
No 249
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.87 E-value=50 Score=26.98 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhCCC-CCcEEEEEeChhHHHHHHHHH---hCCcccceEEEeccCCCC
Q 043205 67 GIADLVGLIDIVAPN-DEKMFVVGHDWGAFMAWFLCL---FRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~-~~~~~lvGhS~Gg~ia~~~a~---~~p~~v~~lv~~~~~~~~ 120 (207)
+.+.|..-..++..+ ..++++.|.|+|++-+...-. ..-+++++.+..++|...
T Consensus 92 L~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s 149 (289)
T PF10081_consen 92 LFEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFS 149 (289)
T ss_pred HHHHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCC
Confidence 444555556666543 567999999999988765432 223568999999987764
No 250
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.12 E-value=58 Score=24.86 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCh--hhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh-CC-cccceEEEe
Q 043205 41 RHQITALASLGYRAVAPDLRGYTC--FHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF-RP-DRVKALVNM 114 (207)
Q Consensus 41 ~~~~~~l~~~g~~v~~~D~~G~~~--~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~-~p-~~v~~lv~~ 114 (207)
......+..+++.++.+|-+|.+. ....+.+.++++... ...++++=-+..+.-.+..+.. +. -.++++|+-
T Consensus 73 ~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlT 148 (196)
T PF00448_consen 73 REALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALN--PDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILT 148 (196)
T ss_dssp HHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS--SSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEE
T ss_pred HHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC--CccceEEEecccChHHHHHHHHHhhcccCceEEEE
Confidence 344555666789999999999843 456678888888886 5566655444444444443333 22 236788764
No 251
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=62.91 E-value=11 Score=30.53 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=22.2
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
.++++..+ ..+..++|||+|-+.+..++.
T Consensus 67 ~~~l~~~g--~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 67 WRALLALL--PRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHHhcC--CCCcEEeecCHHHHHHHHHhC
Confidence 34455556 678999999999998887764
No 252
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.14 E-value=18 Score=27.12 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=50.9
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCE-EEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYR-AVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~-v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
..||.+-|++.......+++ ...++. ++++|+.....+ -|..+ .+.+-+|++|||-.+|-++...
T Consensus 12 ~LIvyFaGwgtpps~v~HLi---lpeN~dl~lcYDY~dl~ld---fDfsA--------y~hirlvAwSMGVwvAeR~lqg 77 (214)
T COG2830 12 HLIVYFAGWGTPPSAVNHLI---LPENHDLLLCYDYQDLNLD---FDFSA--------YRHIRLVAWSMGVWVAERVLQG 77 (214)
T ss_pred EEEEEEecCCCCHHHHhhcc---CCCCCcEEEEeehhhcCcc---cchhh--------hhhhhhhhhhHHHHHHHHHHhh
Confidence 37888888887776554432 233454 667887654211 11111 3467799999999999998887
Q ss_pred CCcccceEEEeccCCC
Q 043205 104 RPDRVKALVNMSVTFD 119 (207)
Q Consensus 104 ~p~~v~~lv~~~~~~~ 119 (207)
.+ ++..+.+++.-.
T Consensus 78 ~~--lksatAiNGTgL 91 (214)
T COG2830 78 IR--LKSATAINGTGL 91 (214)
T ss_pred cc--ccceeeecCCCC
Confidence 76 666776765443
No 253
>PRK14974 cell division protein FtsY; Provisional
Probab=61.53 E-value=70 Score=26.81 Aligned_cols=113 Identities=11% Similarity=0.067 Sum_probs=64.2
Q ss_pred HhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC--cccceEEEeccCCCCCCC
Q 043205 48 ASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP--DRVKALVNMSVTFDHFDP 123 (207)
Q Consensus 48 ~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p--~~v~~lv~~~~~~~~~~~ 123 (207)
...++.++.+|-+|. +...+.+.+..+.+.+. .+.++++.-+.-|.-+...+..+. -.+.++|+.-.--.+.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~--pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~-- 294 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK--PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAK-- 294 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC--CceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCC--
Confidence 445799999999997 34566677777777776 556677777666666666665443 2467777642111110
Q ss_pred CCcccccchHHHHHHHhCChhhHhhhcCCcHHHHHHhhcCHHHHHHHHhh
Q 043205 124 NTSVSNNKRIEALRAYYGDDYYMCRFQKPGEIEAEFAQIGIETIIKEFFT 173 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 173 (207)
....+..... .+.. ..+....+.. ..+..++.+.+++.++.
T Consensus 295 -----~G~~ls~~~~-~~~P--i~~i~~Gq~v-~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 295 -----GGAALSIAYV-IGKP--ILFLGVGQGY-DDLIPFDPDWFVDKLLG 335 (336)
T ss_pred -----ccHHHHHHHH-HCcC--EEEEeCCCCh-hhcccCCHHHHHHHHhC
Confidence 1111221111 1111 1122334445 55777788888887763
No 254
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=59.88 E-value=1.1e+02 Score=26.29 Aligned_cols=84 Identities=10% Similarity=-0.031 Sum_probs=54.1
Q ss_pred ECCCCCCh-hhHHHHHHHHHhCCCEEEEeCCCCC---------------------------------ChhhhHHHHHHHH
Q 043205 30 LHGFPELW-YSWRHQITALASLGYRAVAPDLRGY---------------------------------TCFHGIADLVGLI 75 (207)
Q Consensus 30 lHG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~---------------------------------~~~~~~~~~~~~~ 75 (207)
+=|-.++. ..+..+...+.+.|.+++.+|.--. .++.+.+-...++
T Consensus 6 iigT~DTK~~E~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v 85 (403)
T PF06792_consen 6 IIGTLDTKGEELLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAARFV 85 (403)
T ss_pred EEEccCCCHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHHHHH
Confidence 33555554 3556667777788898888874332 1222334444555
Q ss_pred HHhCC--CCCcEEEEEeChhHHHHHHHHHhCCcccceEEE
Q 043205 76 DIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVN 113 (207)
Q Consensus 76 ~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~ 113 (207)
..+-. ..+-++-+|-|.|..++.......|-.+-+++.
T Consensus 86 ~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmV 125 (403)
T PF06792_consen 86 SDLYDEGKIDGVIGIGGSGGTALATAAMRALPIGFPKLMV 125 (403)
T ss_pred HHHHhcCCccEEEEecCCccHHHHHHHHHhCCCCCCeEEE
Confidence 55432 145678899999999999988888866666654
No 255
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.85 E-value=7.3 Score=31.57 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=27.2
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCCcccceEEEec
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMS 115 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~ 115 (207)
..++.++|-||||.++......++.-|..+=+++
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~ 227 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLHQKPVATAPCLN 227 (371)
T ss_pred cccceeeeeecccHHHHhhcccCCCCcccccccc
Confidence 5689999999999999988887776566554554
No 256
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=58.34 E-value=20 Score=26.55 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEec
Q 043205 66 HGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMS 115 (207)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~ 115 (207)
...+.+.++++.+....+++.++|.|..|...+.++...++.+..++=.+
T Consensus 52 ~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 52 QSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCC
Confidence 34455666666654446789999999999999999877666676666444
No 257
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=56.48 E-value=86 Score=23.82 Aligned_cols=91 Identities=10% Similarity=-0.048 Sum_probs=55.3
Q ss_pred EEEECCEEEEEEeeCC----CcE--EEEECCCCCChhhHHHHHHHHHhCCCEE------EEeCCCCCChhhhHHHHHHHH
Q 043205 8 IVKVNGINMHVAEKGQ----GPV--ILFLHGFPELWYSWRHQITALASLGYRA------VAPDLRGYTCFHGIADLVGLI 75 (207)
Q Consensus 8 ~v~~~g~~i~~~~~g~----~~~--lvllHG~~~~~~~~~~~~~~l~~~g~~v------~~~D~~G~~~~~~~~~~~~~~ 75 (207)
.+..+|..+.|..+.. |++ |-++-|++...+.-.++...+.++|+.+ +.++.-- ........+..++
T Consensus 39 e~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd-~~~~~~~fVk~fi 117 (184)
T TIGR01626 39 EIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADD-AIVGTGMFVKSSA 117 (184)
T ss_pred eEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECcc-chhhHHHHHHHHH
Confidence 3555677788887652 444 4445578888888888999999888888 8887432 2223344556666
Q ss_pred HHhCCCCCcEEEEEeChhHHHHHHH
Q 043205 76 DIVAPNDEKMFVVGHDWGAFMAWFL 100 (207)
Q Consensus 76 ~~l~~~~~~~~lvGhS~Gg~ia~~~ 100 (207)
+..+. .-++..+..+-.|.++..+
T Consensus 118 e~~~~-~~P~~~vllD~~g~v~~~~ 141 (184)
T TIGR01626 118 KKGKK-ENPWSQVVLDDKGAVKNAW 141 (184)
T ss_pred HHhcc-cCCcceEEECCcchHHHhc
Confidence 66653 2333344444455444433
No 258
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=55.09 E-value=26 Score=26.23 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=40.5
Q ss_pred EEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-------ChhhhH------HHHHHHHHHhCCCCCcEEEEEeChhH
Q 043205 28 LFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-------TCFHGI------ADLVGLIDIVAPNDEKMFVVGHDWGA 94 (207)
Q Consensus 28 vllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-------~~~~~~------~~~~~~~~~l~~~~~~~~lvGhS~Gg 94 (207)
|++.|.+++..+-.+++..|..+ |.--.+-+|+- ....++ .-....++.++ ..-=+++|.|-.|
T Consensus 44 vl~cGNGgSaadAqHfaael~gR-f~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g--~~GDvLigISTSG 120 (176)
T COG0279 44 VLACGNGGSAADAQHFAAELTGR-FEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALG--QPGDVLIGISTSG 120 (176)
T ss_pred EEEECCCcchhhHHHHHHHHhhH-HHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcC--CCCCEEEEEeCCC
Confidence 45679999999988988888765 44444444443 111122 22456677777 4556788888776
Q ss_pred H
Q 043205 95 F 95 (207)
Q Consensus 95 ~ 95 (207)
.
T Consensus 121 N 121 (176)
T COG0279 121 N 121 (176)
T ss_pred C
Confidence 4
No 259
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=55.05 E-value=24 Score=26.04 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
+.+.+.+.+ ...-.+.|-|.|+.++..++...+
T Consensus 16 vl~aL~e~g--i~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 16 VAKALRERG--PLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHHcC--CCCCEEEEECHHHHHHHHHHcCCC
Confidence 444455555 556778999999999999988654
No 260
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=53.37 E-value=24 Score=29.11 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCChhh-hHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 38 YSWRHQITALASLGYRAVAPDLRGYTCFH-GIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 38 ~~~~~~~~~l~~~g~~v~~~D~~G~~~~~-~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
.+|..+.+.+... -..++++==| ... ..--+.+.+++.+ ...-.++|-|+|+.++..++..+
T Consensus 2 ~d~~rl~r~l~~~-~~gLvL~GGG--~RG~ahiGvL~aLee~g--i~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 2 SDFSRLARVLTGN-SIALVLGGGG--ARGCAHIGVIKALEEAG--IPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred ChHHHHHHHhcCC-CEEEEECChH--HHHHHHHHHHHHHHHcC--CCCCEEEEECHHHHHHHHHHcCC
Confidence 4566777777664 2333333211 111 2334556666666 56667899999999999998764
No 261
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=53.35 E-value=70 Score=21.86 Aligned_cols=74 Identities=14% Similarity=-0.017 Sum_probs=49.6
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhC-CCEEEEeCCC-CCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 26 VILFLHGFPELWYSWRHQITALASL-GYRAVAPDLR-GYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~-g~~v~~~D~~-G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
.|+.-|| .-+......+..+... -.++.++++. +.+.+++.+.+.+.++.+.. .+.++++.==.||...-.++.
T Consensus 2 iii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~vlil~Dl~ggsp~n~a~~ 77 (116)
T PF03610_consen 2 IIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDE-GDGVLILTDLGGGSPFNEAAR 77 (116)
T ss_dssp EEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCT-TSEEEEEESSTTSHHHHHHHH
T ss_pred EEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccC-CCcEEEEeeCCCCccchHHHH
Confidence 4788899 5555555666666654 3467777744 45888899999999988863 456666666666665544443
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=53.06 E-value=1.3e+02 Score=26.20 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=42.0
Q ss_pred HHHHHhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCc--ccceEEE
Q 043205 44 ITALASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPD--RVKALVN 113 (207)
Q Consensus 44 ~~~l~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~--~v~~lv~ 113 (207)
+..+.+.+|.++.+|-+|. .-..+.+.+..+.+... ...+++|--++-|.-+...+..+.+ .+.++|+
T Consensus 175 l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~--p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQ--PDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred HHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcC--CcEEEEEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 3445555899999999997 23345556666655555 4567777666656555555554432 3566665
No 263
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=52.24 E-value=27 Score=26.16 Aligned_cols=32 Identities=25% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
.+.+++.+ ...-.++|-|.||.++..++..++
T Consensus 18 l~~L~e~~--~~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 18 LKALEEAG--ILKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred HHHHHHcC--CCcceEEEECHHHHHHHHHHcCCC
Confidence 33344444 456778999999999999987543
No 264
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=51.87 E-value=17 Score=27.43 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=23.6
Q ss_pred EEEEECC---CCCChhhHHHHHHHHHhCCCEEEEeC
Q 043205 26 VILFLHG---FPELWYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 26 ~lvllHG---~~~~~~~~~~~~~~l~~~g~~v~~~D 58 (207)
.||++|. ...+......+++.|.++||+.+.++
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 5888994 23344566777888888899887764
No 265
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=51.41 E-value=95 Score=22.79 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=52.6
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
|.|.++-|...+..........|.+.|.. +|.+=.+.....+.+.++++.+....-++++.+-.+-+.+.--++...
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~---~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIP---YEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-E---EEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCC---EEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheecc
Confidence 56777878887777777778888886633 232222444566777778887763234688888888888888888765
Q ss_pred CcccceE
Q 043205 105 PDRVKAL 111 (207)
Q Consensus 105 p~~v~~l 111 (207)
+.-|-++
T Consensus 78 ~~PVIgv 84 (150)
T PF00731_consen 78 TLPVIGV 84 (150)
T ss_dssp SS-EEEE
T ss_pred CCCEEEe
Confidence 4334443
No 266
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=51.06 E-value=44 Score=27.32 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=37.0
Q ss_pred CEEEEeCCCCCChhh-hHHHHHHHHHHhCCCCCc-EEEEEeChhHHHHHHHHHhCCcccceEE
Q 043205 52 YRAVAPDLRGYTCFH-GIADLVGLIDIVAPNDEK-MFVVGHDWGAFMAWFLCLFRPDRVKALV 112 (207)
Q Consensus 52 ~~v~~~D~~G~~~~~-~~~~~~~~~~~l~~~~~~-~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 112 (207)
|.+-.++-+..++++ ....+..++++++..... +.=+|..||++. ..+|.++..+|.++-
T Consensus 41 Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~-~~aA~~y~v~V~GvT 102 (283)
T COG2230 41 YSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLA-IYAAEEYGVTVVGVT 102 (283)
T ss_pred eeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHH-HHHHHHcCCEEEEee
Confidence 555556655544433 344566677777754344 444999999987 567777765555544
No 267
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=50.67 E-value=56 Score=25.48 Aligned_cols=78 Identities=27% Similarity=0.271 Sum_probs=47.7
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCC----------CCC------------------ChhhhHHHHHHHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDL----------RGY------------------TCFHGIADLVGLI 75 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~----------~G~------------------~~~~~~~~~~~~~ 75 (207)
.|.+++.||++.....-......+...++.+...+. +|. ....+..+.
T Consensus 49 ~p~v~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 124 (299)
T COG1073 49 LPAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDY---- 124 (299)
T ss_pred CceEEeccCccccccCcchHHHHhhhceeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHH----
Confidence 578999999998876654456666676777666654 222 000011111
Q ss_pred HHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 76 DIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 76 ~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
........+....|++.|+..+..++...+
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 154 (299)
T COG1073 125 RLLGASLGPRILAGLSLGGPSAGALLAWGP 154 (299)
T ss_pred HHHhhhcCcceEEEEEeeccchHHHhhcch
Confidence 111111357888888888888888877665
No 268
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=50.18 E-value=25 Score=28.39 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=26.2
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeC
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D 58 (207)
.||++|....+......+++.|.++||.++.++
T Consensus 232 ~IILmHd~~~T~~aL~~iI~~Lk~kGy~fvtl~ 264 (268)
T TIGR02873 232 AMVLMHPTASSTEGLEEMITIIKEKGYKIGTIT 264 (268)
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHCCCEEEeHH
Confidence 678899776666777888888888899887764
No 269
>PRK10279 hypothetical protein; Provisional
Probab=50.03 E-value=27 Score=28.78 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
+.+.+++.+ ...-.++|-|+|+.++..+|....
T Consensus 23 VL~aL~E~g--i~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 23 VINALKKVG--IEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHcC--CCcCEEEEEcHHHHHHHHHHcCCh
Confidence 455556666 667789999999999999986543
No 270
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=49.93 E-value=33 Score=19.42 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCCEEEEeCCCCC-----ChhhhHHHHHHHHHH
Q 043205 50 LGYRAVAPDLRGY-----TCFHGIADLVGLIDI 77 (207)
Q Consensus 50 ~g~~v~~~D~~G~-----~~~~~~~~~~~~~~~ 77 (207)
.+|.+.+||+||. |.++..+.+++.+..
T Consensus 12 ~~y~~~~pdlpg~~t~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 12 GGYVAYFPDLPGCFTQGDTLEEALENAKEALEL 44 (48)
T ss_dssp SSEEEEETTCCTCEEEESSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccChhhcCCCHHHHHHHHHHHHHH
Confidence 4789999999998 777777777666654
No 271
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.18 E-value=99 Score=26.99 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcc--cceEEEe
Q 043205 42 HQITALASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDR--VKALVNM 114 (207)
Q Consensus 42 ~~~~~l~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~--v~~lv~~ 114 (207)
.-+..+...+|.|+.+|-.|. .-+++.+.+.++-+.+. .+.+.+|--++=|.-|...|..+.+. +.++|+.
T Consensus 173 ~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~--P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 173 AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN--PDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcC--CCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 334556667899999999996 44556667777777777 67888898888888888888776553 5666653
No 272
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=48.10 E-value=58 Score=24.91 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=29.0
Q ss_pred CCCcEEEEECCCCCChhhH--HHHHHHHHhCCCEEEEeCC
Q 043205 22 GQGPVILFLHGFPELWYSW--RHQITALASLGYRAVAPDL 59 (207)
Q Consensus 22 g~~~~lvllHG~~~~~~~~--~~~~~~l~~~g~~v~~~D~ 59 (207)
++++.+|.+-|..+++..= ..+...|.+.|++++..|=
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3468899999998876542 4455677788999999973
No 273
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=48.01 E-value=37 Score=26.43 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
.+.+++.+ .+.-.++|-|.|+.++..++...+
T Consensus 19 L~aL~e~g--i~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 19 LAALLEMG--LEPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred HHHHHHcC--CCceEEEEeCHHHHHHHHHHcCCC
Confidence 33444445 455679999999999999987543
No 274
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=47.40 E-value=31 Score=28.27 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
+.+.+++.+ ...-++.|-|+|+.++..+|..+.
T Consensus 29 Vl~aL~e~g--i~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEAG--IPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHcC--CCccEEEecCHHHHHHHHHHcCCC
Confidence 455556666 678889999999999999987543
No 275
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=47.23 E-value=29 Score=27.05 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=26.1
Q ss_pred cEEEEECCC-CCChhhHHHHHHHHHhCCCEEEEeC
Q 043205 25 PVILFLHGF-PELWYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 25 ~~lvllHG~-~~~~~~~~~~~~~l~~~g~~v~~~D 58 (207)
..||++|.. ..+......+++.|.++||..+.++
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEhH
Confidence 368889974 4555677888899999999988764
No 276
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=46.70 E-value=36 Score=27.55 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
-+.+.+++.+ ...-.+.|-|+|+.++..+|..+
T Consensus 27 GVL~aLeE~g--i~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 27 GILQALEEAG--IPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHHcC--CCccEEEEECHHHHHHHHHHcCC
Confidence 3455556666 55566889999999999998764
No 277
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.51 E-value=45 Score=22.94 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=22.6
Q ss_pred EEECCCCCChhhHHHHHHHHHhCCCEEEEeC
Q 043205 28 LFLHGFPELWYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 28 vllHG~~~~~~~~~~~~~~l~~~g~~v~~~D 58 (207)
|++-|.+.+......+...|...|..+...+
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~ 33 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLH 33 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcc
Confidence 5677888887777777777776677777663
No 278
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=46.07 E-value=1.5e+02 Score=25.54 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=37.3
Q ss_pred CcEEEEECCCCC---ChhhHHHHHHHHHhCCCEEEEeCCCCC------------ChhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 24 GPVILFLHGFPE---LWYSWRHQITALASLGYRAVAPDLRGY------------TCFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 24 ~~~lvllHG~~~---~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
+.|+++++-+.. .+.....-...|.+.|+.++-|+ +|+ +++++...+...+..-....+++.+.
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~-~g~la~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~vlIT 194 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPA-SGRLACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRVLIT 194 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCC-CccccCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEEEEe
Confidence 356777775532 22234555677888898877554 454 56666666655553211114566666
Q ss_pred Ee
Q 043205 89 GH 90 (207)
Q Consensus 89 Gh 90 (207)
|-
T Consensus 195 gG 196 (399)
T PRK05579 195 AG 196 (399)
T ss_pred CC
Confidence 65
No 279
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=44.95 E-value=39 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=22.6
Q ss_pred HHHHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 74 LIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 74 ~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
+++.... .+.+.++|.|-|+..|..++..-
T Consensus 84 l~~~~~~-gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 84 LSKNYEP-GDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred HHhccCC-cceEEEEecCccHHHHHHHHHHH
Confidence 3344433 56799999999999999988653
No 280
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=44.38 E-value=30 Score=31.03 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=22.1
Q ss_pred HHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 76 DIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 76 ~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
+..+ .++-.++|||+|-+.++..|.-.
T Consensus 260 ~~~G--I~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 260 DEFA--IKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HhcC--CCCCEEeecCHHHHHHHHHhCCC
Confidence 4566 78889999999999988887644
No 281
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=43.90 E-value=56 Score=24.12 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=25.6
Q ss_pred CcEEEEECCCCCChhh--HHHHHHHHHhCCCEEEEeC
Q 043205 24 GPVILFLHGFPELWYS--WRHQITALASLGYRAVAPD 58 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~--~~~~~~~l~~~g~~v~~~D 58 (207)
++.+|++-|.++++.. -..+...|.+.|+.++.+|
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 4678999999888754 2555677778899999986
No 282
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=43.70 E-value=1.1e+02 Score=24.45 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=39.8
Q ss_pred EEEEECCCCCChhhH--HHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeCh
Q 043205 26 VILFLHGFPELWYSW--RHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDW 92 (207)
Q Consensus 26 ~lvllHG~~~~~~~~--~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~ 92 (207)
.=++++|..|++..+ +.+...+.+.|.+++-++- +...++.++++.+.....+++++.-++
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k------~~L~~l~~l~~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK------EDLGDLPELLDLLRDRPYKFILFCDDL 115 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH------HHhccHHHHHHHHhcCCCCEEEEecCC
Confidence 446679987766543 6667777888999888754 344556666666654345777765543
No 283
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=43.33 E-value=50 Score=24.42 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=22.6
Q ss_pred HHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 73 GLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 73 ~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
+.+++.+ ...-.++|-|.|+.++..++...+
T Consensus 20 ~~L~e~g--~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 20 RALEEEG--IEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHHHCC--CCeeEEEEeCHHHHHHHHHHcCCC
Confidence 3344445 455668999999999998887654
No 284
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=43.04 E-value=44 Score=25.80 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
+.+.+.+.+ ...-.++|-|.|+.++..++...+
T Consensus 16 vl~aL~e~g--~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEAG--IEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHcC--CCCCEEEEECHHHHHHHHHHcCCc
Confidence 344445555 455678999999999999998764
No 285
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=42.73 E-value=1.1e+02 Score=22.62 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=37.2
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCCEEEE--eCCCCCChhhhHHHHHHHHHHhC
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVA--PDLRGYTCFHGIADLVGLIDIVA 79 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~--~D~~G~~~~~~~~~~~~~~~~l~ 79 (207)
+.+.++++.|-+.++.+=...+++|.+.|++|.+ +..+. ......+.-.++++..+
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPE-KLSEDAKQQLEILKKMG 81 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSS-STSHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccc-cCCHHHHHHHHHHHhcC
Confidence 4678999999998888887889999999999877 33222 33344444445555554
No 286
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=42.63 E-value=88 Score=25.29 Aligned_cols=72 Identities=8% Similarity=0.021 Sum_probs=48.9
Q ss_pred CCcEEEEECCCCCCh--hhHHHHHHHHHhCCCEEEEeCCCCCChhhhH-HHHHHHHHHhCCCCCcEEEEEeChhHHHH
Q 043205 23 QGPVILFLHGFPELW--YSWRHQITALASLGYRAVAPDLRGYTCFHGI-ADLVGLIDIVAPNDEKMFVVGHDWGAFMA 97 (207)
Q Consensus 23 ~~~~lvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~-~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia 97 (207)
..|+||++.|+-+++ ..-..+...+-.+|++|..+..|. .++.. ..+-.+-.++.. ...+.++--||=+-+.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt--~eE~~~p~lWRfw~~lP~-~G~i~IF~RSWY~~vl 128 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPS--AEELDHDFLWRIHKALPE-RGEIGIFNRSHYEDVL 128 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC--HHHHcCchHHHHHHhCCC-CCeEEEEcCccccchh
Confidence 358999999996654 455777788888899999998774 22222 234456666654 5677777777655443
No 287
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=41.11 E-value=29 Score=27.56 Aligned_cols=23 Identities=13% Similarity=0.429 Sum_probs=16.3
Q ss_pred HHHHHHhCCCCCcEEEEEeChhHH
Q 043205 72 VGLIDIVAPNDEKMFVVGHDWGAF 95 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS~Gg~ 95 (207)
..+.+.+.. .+.++++|||+|..
T Consensus 225 ~~~~~~l~~-i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 225 KSFFESLSD-IDEIIIYGHSLGEV 247 (270)
T ss_pred HHHHhhhcC-CCEEEEEeCCCchh
Confidence 344455542 67899999999975
No 288
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=40.97 E-value=2.4e+02 Score=24.52 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHHHHhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCc--ccceEEEe
Q 043205 44 ITALASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPD--RVKALVNM 114 (207)
Q Consensus 44 ~~~l~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~--~v~~lv~~ 114 (207)
...+...+|.++.+|-+|. .-......+..+.+.+. ...+++|--++-|.-+...|..+.+ .+.++|+-
T Consensus 175 l~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~--p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILN--PDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhC--CceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEe
Confidence 3344456799999999996 23445566666666665 4566666555555555555554322 36676654
No 289
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=40.91 E-value=40 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.7
Q ss_pred CCcEEEEEeChhHHHHHHHHH
Q 043205 82 DEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
..+-.++|||+|-+.|..++.
T Consensus 82 i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 82 LKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred CCCCEEeecCHHHHHHHHHhC
Confidence 568889999999998887764
No 290
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=40.84 E-value=1e+02 Score=26.71 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=54.6
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----------------ChhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----------------TCFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----------------~~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
.+++++--..+....-......+.+.+.-|.-.|..+| .++.+.++.......-. ...-++.
T Consensus 49 ~~villSd~~G~~d~~~s~a~al~~~~Alv~~vd~~~ylaaL~~dd~ecvylisd~Ealsr~~Qr~a~~g~--yr~PVl~ 126 (456)
T COG3946 49 GLVILLSDEAGIGDQERSRADALLARGALVAPVDLGAYLAALGADDNECVYLISDFEALSREAQRAADLGV--YRLPVLT 126 (456)
T ss_pred eeeEEEEcccChhhhhcchhHHHhhcCCeeeccccchhhhccccCCCcceEEehhHHHHhHHHHHHhhccC--cccceEe
Confidence 35555555444443333445666677899999999998 33333333322222111 3456788
Q ss_pred EeChhHHHHHHHHHhCCc-ccceEEEec
Q 043205 89 GHDWGAFMAWFLCLFRPD-RVKALVNMS 115 (207)
Q Consensus 89 GhS~Gg~ia~~~a~~~p~-~v~~lv~~~ 115 (207)
|---||.++...+++-|+ .+.+.+.+.
T Consensus 127 g~g~Gg~~A~asaaqSp~atlag~Vsld 154 (456)
T COG3946 127 GPGQGGTLAYASAAQSPDATLAGAVSLD 154 (456)
T ss_pred ecCCCcHHHHHHHhhChhhhhcCccCCC
Confidence 999999999999888775 355555554
No 291
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.52 E-value=1.1e+02 Score=24.75 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=38.7
Q ss_pred ECCCCCChh-hHHHHHHHHHhCCCEEEEeCC-CCCChhhhHHHHHHHHHHhCCCCCcEEE-EEeC
Q 043205 30 LHGFPELWY-SWRHQITALASLGYRAVAPDL-RGYTCFHGIADLVGLIDIVAPNDEKMFV-VGHD 91 (207)
Q Consensus 30 lHG~~~~~~-~~~~~~~~l~~~g~~v~~~D~-~G~~~~~~~~~~~~~~~~l~~~~~~~~l-vGhS 91 (207)
+=|.+|++. .-..++..+. ++.++-++. ++|+..++.+|++.++...+.+.+++++ +-.+
T Consensus 36 LvG~~GsGr~sl~rLaa~i~--~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 36 LVGVGGSGRQSLARLAAFIC--GYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp EECTTTSCHHHHHHHHHHHT--TEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECC
T ss_pred EecCCCccHHHHHHHHHHHh--ccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCc
Confidence 447666665 3444555543 589999884 6678999999999998887754455554 4443
No 292
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.23 E-value=93 Score=22.99 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=23.3
Q ss_pred EEEECCCCCChhhHHHHHHHHHhCCCEEEEeC
Q 043205 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 27 lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D 58 (207)
-|++.|.|.+...-..+...|...|..+...+
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 47788888887666666777777788777763
No 293
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=39.90 E-value=62 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=21.7
Q ss_pred HHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 73 GLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 73 ~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
+.+++.+ ...-.++|-|.|+.++..++...
T Consensus 20 ~~L~~~~--~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 20 KALEEAG--IPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHcC--CCeeEEEEECHHHHHHHHHHcCC
Confidence 3334444 44557899999999999998654
No 294
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=39.29 E-value=1.7e+02 Score=22.24 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=32.4
Q ss_pred ChhhhHHHHHHHHHHhCC---C---CCcEEEEEeChhHHHHHHHHHhCCcccceEEEecc
Q 043205 63 TCFHGIADLVGLIDIVAP---N---DEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~---~---~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~ 116 (207)
+.+.+.-|+..+...+.. + .+=+.++|.+.|+.+....-.......+-++.+++
T Consensus 68 ~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DG 127 (185)
T PF09314_consen 68 SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDG 127 (185)
T ss_pred chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCc
Confidence 466777788887777621 1 12355689998988876655443323344555553
No 295
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=38.61 E-value=23 Score=30.71 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCccc
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRV 108 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v 108 (207)
+.+.+.+.+ ..+=++.|-|.|+.++..++...++.+
T Consensus 91 VLkaL~E~g--l~p~vIsGTSaGAivAal~as~~~eel 126 (421)
T cd07230 91 VLKALFEAN--LLPRIISGSSAGSIVAAILCTHTDEEI 126 (421)
T ss_pred HHHHHHHcC--CCCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 334444444 456689999999999999988666543
No 296
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=37.26 E-value=1.8e+02 Score=24.03 Aligned_cols=83 Identities=13% Similarity=-0.004 Sum_probs=49.9
Q ss_pred CcEEEEECCCCCChh--hHHHHHHHHHhCCCEEEEeCC--CC-------C--------------------------Chhh
Q 043205 24 GPVILFLHGFPELWY--SWRHQITALASLGYRAVAPDL--RG-------Y--------------------------TCFH 66 (207)
Q Consensus 24 ~~~lvllHG~~~~~~--~~~~~~~~l~~~g~~v~~~D~--~G-------~--------------------------~~~~ 66 (207)
+|+++++-|+.|++. ....+..++.+...+.+.+++ .- + ++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNL 97 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNL 97 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHH
Confidence 688999999987764 346667777766554444332 11 1 3344
Q ss_pred hHHHHH---HHHHHhCCC--------CCcEEEEEeChhHHHHH-HHHHhCCc
Q 043205 67 GIADLV---GLIDIVAPN--------DEKMFVVGHDWGAFMAW-FLCLFRPD 106 (207)
Q Consensus 67 ~~~~~~---~~~~~l~~~--------~~~~~lvGhS~Gg~ia~-~~a~~~p~ 106 (207)
++..+. .++++.... ..++=++-||..|.|.. .+|..+|.
T Consensus 98 F~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~pt 149 (366)
T KOG1532|consen 98 FATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPT 149 (366)
T ss_pred HHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCe
Confidence 444333 455554431 34677888998887766 45666774
No 297
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=36.94 E-value=57 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=27.8
Q ss_pred CCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChh
Q 043205 51 GYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWG 93 (207)
Q Consensus 51 g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~G 93 (207)
+-.+++.|..|. +-.++++.+..+...-. .+=++++|-+.|
T Consensus 67 ~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~--~~i~F~IGG~~G 109 (155)
T PF02590_consen 67 NDYVILLDERGKQLSSEEFAKKLERWMNQGK--SDIVFIIGGADG 109 (155)
T ss_dssp TSEEEEE-TTSEE--HHHHHHHHHHHHHTTS---EEEEEE-BTTB
T ss_pred CCEEEEEcCCCccCChHHHHHHHHHHHhcCC--ceEEEEEecCCC
Confidence 677899999997 77778888777766533 234568899998
No 298
>PHA02114 hypothetical protein
Probab=36.28 E-value=57 Score=22.15 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=28.5
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEe
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAP 57 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~ 57 (207)
.+|++=-.+..+..-|...+..|.+.||+|++-
T Consensus 83 gtivldvn~amsr~pwi~v~s~le~~g~~vvat 115 (127)
T PHA02114 83 GTIVLDVNYAMSRAPWIKVISRLEEAGFNVVAT 115 (127)
T ss_pred CeEEEEehhhhccCcHHHHHHHHHhcCceeeeh
Confidence 477877788888889999999999999999874
No 299
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=35.64 E-value=1e+02 Score=21.86 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=38.2
Q ss_pred EEEEECCCCC---Chh-hHHHHHHHHHhCCCEEEEeCCCCCChh----------hhHHHHHHHHHHhCCCCCcEEEEE
Q 043205 26 VILFLHGFPE---LWY-SWRHQITALASLGYRAVAPDLRGYTCF----------HGIADLVGLIDIVAPNDEKMFVVG 89 (207)
Q Consensus 26 ~lvllHG~~~---~~~-~~~~~~~~l~~~g~~v~~~D~~G~~~~----------~~~~~~~~~~~~l~~~~~~~~lvG 89 (207)
.|++|.|.+. +.. ..+.+.+.+.+.|+.+-.+|+..+... ...+++.++.+++. ..+.++++
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI~~ 77 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGIIFA 77 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEEEe
Confidence 3677788762 222 335556677777899999999987111 23456777777776 33444443
No 300
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=35.42 E-value=1.5e+02 Score=21.38 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCEEEEeCCCCC--------------------ChhhhHHH-----HHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 42 HQITALASLGYRAVAPDLRGY--------------------TCFHGIAD-----LVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 42 ~~~~~l~~~g~~v~~~D~~G~--------------------~~~~~~~~-----~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
.....|.+.|+.+..+|.... +...+.+. +.+.++..- .+-.+++|.|.|+++
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~--~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAY--RKGGVIIGTSAGAMI 81 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHH--HTTSEEEEETHHHHC
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHH--HCCCEEEEEChHHhh
Confidence 345566777888777777764 11122222 222333321 133788999999987
No 301
>PRK10867 signal recognition particle protein; Provisional
Probab=35.18 E-value=3.1e+02 Score=23.97 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=42.1
Q ss_pred HHHHhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCc--ccceEEE
Q 043205 45 TALASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPD--RVKALVN 113 (207)
Q Consensus 45 ~~l~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~--~v~~lv~ 113 (207)
......+|.++.+|-+|. .-+.+...+..+.+... ...+++|--++-|.-+...+..+.+ .+.++|+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~--p~evllVlda~~gq~av~~a~~F~~~~~i~giIl 247 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVN--PDEILLVVDAMTGQDAVNTAKAFNEALGLTGVIL 247 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhC--CCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEE
Confidence 344455799999999996 23455566666666665 4566666666555556566654332 3566666
No 302
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=34.75 E-value=28 Score=29.97 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceE
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKAL 111 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l 111 (207)
-+.+.+.+.+ ..+=+++|-|.|+.++..++...++.+..+
T Consensus 84 GVlkaL~e~g--llp~iI~GtSAGAivaalla~~t~~el~~~ 123 (407)
T cd07232 84 GVVKALLDAD--LLPNVISGTSGGSLVAALLCTRTDEELKQL 123 (407)
T ss_pred HHHHHHHhCC--CCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 3444444445 556679999999999999998665555443
No 303
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.43 E-value=2.4e+02 Score=24.53 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=27.9
Q ss_pred HHHHhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 45 TALASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 45 ~~l~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
..+.+.+|.++.+|-.|. .-..+.+.+.++.+.+. .+.+++|
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~--Pd~vi~V 220 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK--PDEIIFV 220 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC--CCeEEEE
Confidence 455567899999999996 44445566666666666 4555544
No 304
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=34.37 E-value=47 Score=27.52 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.2
Q ss_pred CCcEEEEEeChhHHHHHHHHH
Q 043205 82 DEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
.++.++.|||+|=+.++.++.
T Consensus 84 ~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 84 VKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCceeecccHhHHHHHHHcc
Confidence 578899999999999887765
No 305
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=34.28 E-value=1.6e+02 Score=23.27 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=49.7
Q ss_pred CcEEEEECCCCCCh--hhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHH-HHHHHHHhCCCCCcEEEEEeChhHHHH
Q 043205 24 GPVILFLHGFPELW--YSWRHQITALASLGYRAVAPDLRGYTCFHGIAD-LVGLIDIVAPNDEKMFVVGHDWGAFMA 97 (207)
Q Consensus 24 ~~~lvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~-~~~~~~~l~~~~~~~~lvGhS~Gg~ia 97 (207)
.|+||++.|+-+++ ..-..+...+-.+|++|..+..|. .++...+ +-.+-..+.. ...+.++--||=+-+.
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt--~eE~~~p~lwRfw~~lP~-~G~i~IF~rSwY~~~l 103 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPS--DRERTQWYFQRYVQHLPA-AGEIVLFDRSWYNRAG 103 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC--HHHHcChHHHHHHHhCCC-CCeEEEEeCchhhhHH
Confidence 58999999996654 345677778878899999988774 3333333 4456666654 5678888888765543
No 306
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=34.07 E-value=97 Score=28.16 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCcEEEEEe------ChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 69 ADLVGLIDIVAPNDEKMFVVGH------DWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~lvGh------S~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
..+...+..+-...++++++|| +.|+++++..-+.-..+ .+.+.+++.-
T Consensus 324 Rvis~al~d~i~e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp~~ 378 (655)
T COG3887 324 RVISTALSDIIKESDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDPED 378 (655)
T ss_pred HHHHHHHHHHHhhcCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECccc
Confidence 4444444433222679999999 89999998665543333 6777777543
No 307
>COG3933 Transcriptional antiterminator [Transcription]
Probab=33.85 E-value=2.7e+02 Score=24.45 Aligned_cols=71 Identities=14% Similarity=0.053 Sum_probs=50.8
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHH
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWF 99 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~ 99 (207)
.++++.||....+..- ..+..|... --+.++|+|=- ++.+..+.+.+.+++.. ..+=+++=-+||+.....
T Consensus 110 ~vIiiAHG~sTASSma-evanrLL~~-~~~~aiDMPLdvsp~~vle~l~e~~k~~~--~~~GlllLVDMGSL~~f~ 181 (470)
T COG3933 110 KVIIIAHGYSTASSMA-EVANRLLGE-EIFIAIDMPLDVSPSDVLEKLKEYLKERD--YRSGLLLLVDMGSLTSFG 181 (470)
T ss_pred eEEEEecCcchHHHHH-HHHHHHhhc-cceeeecCCCcCCHHHHHHHHHHHHHhcC--ccCceEEEEecchHHHHH
Confidence 5899999987555443 445555554 56789999976 78888888888888877 445455566888877653
No 308
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=33.78 E-value=30 Score=28.79 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
+.+.+.+.+ ..+-++.|-|.|+.++..++...+
T Consensus 86 VlkaL~e~g--l~p~~i~GsSaGAivaa~~~~~t~ 118 (323)
T cd07231 86 VVRTLVEHQ--LLPRVIAGSSVGSIVCAIIATRTD 118 (323)
T ss_pred HHHHHHHcC--CCCCEEEEECHHHHHHHHHHcCCH
Confidence 444444445 556679999999999998887543
No 309
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=33.57 E-value=78 Score=25.15 Aligned_cols=33 Identities=15% Similarity=-0.072 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCC-cEEEEEeChhHHHHHHHHHhCCc
Q 043205 72 VGLIDIVAPNDE-KMFVVGHDWGAFMAWFLCLFRPD 106 (207)
Q Consensus 72 ~~~~~~l~~~~~-~~~lvGhS~Gg~ia~~~a~~~p~ 106 (207)
.+.+.+.+ .. .=.++|-|.|+.++..++...+.
T Consensus 17 l~al~e~~--~~~fd~i~GtSaGAi~a~~~~~g~~~ 50 (266)
T cd07208 17 LDAFLEAG--IRPFDLVIGVSAGALNAASYLSGQRG 50 (266)
T ss_pred HHHHHHcC--CCCCCEEEEECHHHHhHHHHHhCCcc
Confidence 33344444 33 44689999999999998876543
No 310
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=33.43 E-value=1.1e+02 Score=22.65 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhH
Q 043205 51 GYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGA 94 (207)
Q Consensus 51 g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg 94 (207)
+-.+++.|..|- +-.++++.+..+...-. .+-++++|-+.|=
T Consensus 67 ~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~--~~i~F~IGGa~G~ 110 (157)
T PRK00103 67 GARVIALDERGKQLSSEEFAQELERWRDDGR--SDVAFVIGGADGL 110 (157)
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCC--ccEEEEEcCcccc
Confidence 346888999997 66667777666533222 2345577877663
No 311
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=33.33 E-value=33 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccce
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKA 110 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~ 110 (207)
+.+.+.+.+ ..+=++.|-|.|+.++..+|...++.+..
T Consensus 101 v~kaL~e~g--l~p~~i~GtS~Gaivaa~~a~~~~~e~~~ 138 (391)
T cd07229 101 VVKALWLRG--LLPRIITGTATGALIAALVGVHTDEELLR 138 (391)
T ss_pred HHHHHHHcC--CCCceEEEecHHHHHHHHHHcCCHHHHHH
Confidence 444455555 56677999999999999999865544433
No 312
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=33.25 E-value=2.5e+02 Score=22.35 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccce--EEEeccCCCCCCCCCcccccchHHHHHHHhCChh
Q 043205 67 GIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKA--LVNMSVTFDHFDPNTSVSNNKRIEALRAYYGDDY 144 (207)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~--lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (207)
+.+-..+++..+- ++-..+|.|||-.+....-...+..... +|-+-+....... .........+.+.++..+
T Consensus 38 l~~~aA~~L~~~l---~~~~~iGv~wG~Tl~~~~~~l~~~~~~~~~vV~l~Gg~~~~~~---~~~~~i~~~lA~~~g~~~ 111 (255)
T PF04198_consen 38 LGEAAAEYLSELL---KDGDVIGVGWGRTLYAVANHLPPKSLPNVTVVPLIGGVGNSNS---YQANEIARRLAEKLGGKY 111 (255)
T ss_dssp HHHHHHHHHHHH-----TTEEEEE-TSHHHHHHHHTS--SSSSCEEEEESBSBTTTSSG---GSHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhC---CCCCEEEEcchHHHHHHHHhcCccCCCCcEEEECCCCCCCCCC---cCHHHHHHHHHHHhCCcE
Confidence 3333444554443 2333899999999875544333322332 3433333332111 112334455566666655
Q ss_pred hHhh
Q 043205 145 YMCR 148 (207)
Q Consensus 145 ~~~~ 148 (207)
|...
T Consensus 112 ~~l~ 115 (255)
T PF04198_consen 112 YFLP 115 (255)
T ss_dssp E---
T ss_pred EEEe
Confidence 5443
No 313
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=33.15 E-value=58 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=24.2
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCC
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~ 60 (207)
.+.-+|+.|.|.+.. +..|+++||.|+.+|+.
T Consensus 37 ~~~rvLvPgCG~g~D-----~~~La~~G~~VvGvDls 68 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYD-----MLWLAEQGHDVVGVDLS 68 (218)
T ss_dssp TSEEEEETTTTTSCH-----HHHHHHTTEEEEEEES-
T ss_pred CCCeEEEeCCCChHH-----HHHHHHCCCeEEEEecC
Confidence 345688888887754 45678889999999984
No 314
>PRK15482 transcriptional regulator MurR; Provisional
Probab=33.14 E-value=76 Score=25.55 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred EEEECCCCCChhhHHHHHHHHHhCCCEEEEe
Q 043205 27 ILFLHGFPELWYSWRHQITALASLGYRAVAP 57 (207)
Q Consensus 27 lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~ 57 (207)
-|++.|.+.+...-..+...|...|+++...
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~ 167 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACE 167 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEe
Confidence 4778899888766666667777778887775
No 315
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=33.08 E-value=56 Score=29.05 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh--CCcccceEEEeccCC
Q 043205 66 HGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF--RPDRVKALVNMSVTF 118 (207)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~--~p~~v~~lv~~~~~~ 118 (207)
.-..++++=+...+.+..++.|+|.|.|+.-...-... -...++..|+=++..
T Consensus 201 LAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~ 255 (601)
T KOG4389|consen 201 LALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSL 255 (601)
T ss_pred HHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCC
Confidence 34466777777888777889999999998754322221 112455555555443
No 316
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=32.92 E-value=1.1e+02 Score=22.52 Aligned_cols=45 Identities=27% Similarity=0.171 Sum_probs=28.2
Q ss_pred CCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHH
Q 043205 51 GYRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAW 98 (207)
Q Consensus 51 g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~ 98 (207)
|-.|++.|.+|- +-+++++.+..+.. .+ .+=.+++|-|.|=.=+.
T Consensus 67 ~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~-~G--~~i~f~IGG~~Gl~~~~ 113 (155)
T COG1576 67 GSYVVLLDIRGKALSSEEFADFLERLRD-DG--RDISFLIGGADGLSEAV 113 (155)
T ss_pred CCeEEEEecCCCcCChHHHHHHHHHHHh-cC--CeEEEEEeCcccCCHHH
Confidence 578889999997 66666666555433 22 23355778887744433
No 317
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=32.80 E-value=63 Score=26.34 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=40.4
Q ss_pred EEEEECCCCCChhhH-HHHHHHHHhCCC-------EEEEeCCCCC---ChhhhHH---------------HHHHHHHHhC
Q 043205 26 VILFLHGFPELWYSW-RHQITALASLGY-------RAVAPDLRGY---TCFHGIA---------------DLVGLIDIVA 79 (207)
Q Consensus 26 ~lvllHG~~~~~~~~-~~~~~~l~~~g~-------~v~~~D~~G~---~~~~~~~---------------~~~~~~~~l~ 79 (207)
.-+++.|.|..+-.- +.+...+.+.|. +++.+|..|. +-.++.. ++.++++.+
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v- 104 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAV- 104 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhc-
Confidence 445566776655433 344455555566 8999999996 1111111 222233322
Q ss_pred CCCCcEEEEEeC-hhHHHHHHH
Q 043205 80 PNDEKMFVVGHD-WGAFMAWFL 100 (207)
Q Consensus 80 ~~~~~~~lvGhS-~Gg~ia~~~ 100 (207)
++-+|+|-| .||.+.-.+
T Consensus 105 ---~ptvlIG~S~~~g~ft~ev 123 (279)
T cd05312 105 ---KPTVLIGLSGVGGAFTEEV 123 (279)
T ss_pred ---CCCEEEEeCCCCCCCCHHH
Confidence 578899999 477664443
No 318
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.28 E-value=2e+02 Score=20.95 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=35.5
Q ss_pred CCCcEEEEEC-CCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 22 GQGPVILFLH-GFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 22 g~~~~lvllH-G~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
|.+|.+++.- |.-++...-.-+...|.+.||.|+..-+.- +.++.++. .+..+.+-+.+.+.|-|...
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~-tp~e~v~a------A~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ-TPEEAVRA------AVEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC-CHHHHHHH------HHhcCCCEEEEEeccchHHH
Confidence 5566555544 543443344455678888899988764433 33333222 12222344445555555544
No 319
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=31.77 E-value=97 Score=24.29 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 71 LVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 71 ~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
+.+.+.+.+...+.-.++|-|.|+.++..++...+
T Consensus 17 Vl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 17 VLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 44444444421123479999999999999987654
No 320
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=31.68 E-value=1.7e+02 Score=24.89 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=30.1
Q ss_pred CCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 81 NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 81 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
..+++++.|.|-=|..++..|+ ..+||++++-+....
T Consensus 170 ~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~ 206 (367)
T PF10142_consen 170 NIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDV 206 (367)
T ss_pred CccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEcc
Confidence 3789999999999999998888 456899988655443
No 321
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.66 E-value=2.8e+02 Score=22.44 Aligned_cols=69 Identities=7% Similarity=0.029 Sum_probs=43.4
Q ss_pred HHHHHh-CCCEEEEeCCCCCC--hhhhHHHHHHHHHHhCCCCCcEEE-EEeChhHHHHHHHHHhCC-cccceEEEe
Q 043205 44 ITALAS-LGYRAVAPDLRGYT--CFHGIADLVGLIDIVAPNDEKMFV-VGHDWGAFMAWFLCLFRP-DRVKALVNM 114 (207)
Q Consensus 44 ~~~l~~-~g~~v~~~D~~G~~--~~~~~~~~~~~~~~l~~~~~~~~l-vGhS~Gg~ia~~~a~~~p-~~v~~lv~~ 114 (207)
+..+.+ .++.++.+|.+|.. -....+.+.++++... ...+++ +.-+.++.-+...+..+. -.++++|+-
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~--~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~T 219 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE--PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 219 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhC--CCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEE
Confidence 344443 36999999999974 2445555666666555 344554 455677777777776643 356777764
No 322
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=31.64 E-value=94 Score=31.18 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCcEEEEEeChhHHHH
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHDWGAFMA 97 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS~Gg~ia 97 (207)
.+.+++..++ ..|-.++|||.|-+-+
T Consensus 571 aLtDlLs~lg--i~PDGIvGHS~GElgc 596 (2376)
T KOG1202|consen 571 ALTDLLSCLG--IRPDGIVGHSLGELGC 596 (2376)
T ss_pred HHHHHHHhcC--CCCCcccccccchhcc
Confidence 3456777788 7888999999986543
No 323
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.58 E-value=1.7e+02 Score=21.56 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=22.0
Q ss_pred EEEECCCCCChhhHHHHHHHHHhCCCEEEEeC
Q 043205 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 27 lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D 58 (207)
-|++-|.+.+...-..+...|...|..+..++
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 66 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVG 66 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeC
Confidence 35677888776665666667766677777763
No 324
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=30.93 E-value=3.4e+02 Score=23.26 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=48.8
Q ss_pred cEEEEECCCCC---ChhhHHHHHHHHHhCCCEEEEeCCCCC------------ChhhhHHHHHHHHHH---hCCCCCcEE
Q 043205 25 PVILFLHGFPE---LWYSWRHQITALASLGYRAVAPDLRGY------------TCFHGIADLVGLIDI---VAPNDEKMF 86 (207)
Q Consensus 25 ~~lvllHG~~~---~~~~~~~~~~~l~~~g~~v~~~D~~G~------------~~~~~~~~~~~~~~~---l~~~~~~~~ 86 (207)
.++++++-+.. .+.........|.+.|+.++-|. +|+ +++++...+...+.. +. .+++.
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~-~g~~ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~--~~~vl 189 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPD-SGLLACGDEGKGRLAEPETIVKAAEREFSPKEDLE--GKRVL 189 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCC-CcccccccccCCCCCCHHHHHHHHHHHHhhccccC--CceEE
Confidence 46666666432 22344556677888787765554 343 566666666655543 32 45566
Q ss_pred EEEe------------------ChhHHHHHHHHHhCCcccceEEEeccC
Q 043205 87 VVGH------------------DWGAFMAWFLCLFRPDRVKALVNMSVT 117 (207)
Q Consensus 87 lvGh------------------S~Gg~ia~~~a~~~p~~v~~lv~~~~~ 117 (207)
+.|- .+|..++..++.+- ..++++.++
T Consensus 190 it~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G----a~V~~~~g~ 234 (390)
T TIGR00521 190 ITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG----ADVTLITGP 234 (390)
T ss_pred EecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC----CEEEEeCCC
Confidence 6555 36677777666653 234555543
No 325
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=30.83 E-value=2.8e+02 Score=22.11 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCChh-hHHHHHHHHHhCCCE-EEEeCCC
Q 043205 23 QGPVILFLHGFPELWY-SWRHQITALASLGYR-AVAPDLR 60 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~-~~~~~~~~l~~~g~~-v~~~D~~ 60 (207)
..|.|++++-.++... ........|.+.|+. +..++.+
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~ 66 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVR 66 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecC
Confidence 4578999986655443 345556677777884 5555553
No 326
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=30.49 E-value=2.8e+02 Score=22.11 Aligned_cols=67 Identities=19% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHhCCCEEEEeCCCCC------------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH----HHHHHHhCCccc
Q 043205 45 TALASLGYRAVAPDLRGY------------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM----AWFLCLFRPDRV 108 (207)
Q Consensus 45 ~~l~~~g~~v~~~D~~G~------------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i----a~~~a~~~p~~v 108 (207)
+.|...+..|+..|+-|- +.+++.+.+ .++.+.+...-+=+.+|-+.|+.- |+.+..+++ .
T Consensus 104 eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l-~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~--~ 180 (275)
T COG1856 104 EKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSL-LLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYE--P 180 (275)
T ss_pred HHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHH-HHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCC--C
Confidence 344445677888888885 233332222 234444433556678999999864 667777665 4
Q ss_pred ceEEEe
Q 043205 109 KALVNM 114 (207)
Q Consensus 109 ~~lv~~ 114 (207)
+++|+.
T Consensus 181 DalVl~ 186 (275)
T COG1856 181 DALVLV 186 (275)
T ss_pred CeEEEE
Confidence 555543
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=30.02 E-value=2.3e+02 Score=25.40 Aligned_cols=65 Identities=12% Similarity=0.126 Sum_probs=45.2
Q ss_pred cEEEEECCCCCCh-hhHHHHHHHHHhCCCEEEEeCCCCC-----------------------------------ChhhhH
Q 043205 25 PVILFLHGFPELW-YSWRHQITALASLGYRAVAPDLRGY-----------------------------------TCFHGI 68 (207)
Q Consensus 25 ~~lvllHG~~~~~-~~~~~~~~~l~~~g~~v~~~D~~G~-----------------------------------~~~~~~ 68 (207)
...+.+-|++-.. +..+++.+.|++.+.+.+-+++++. +-.++-
T Consensus 97 qKkl~~dG~~LQ~NyVvrHF~Effsd~~R~~mfWSLa~Ad~raqRlAYL~ddP~FAgLs~D~r~lLs~ivvrq~teaEIE 176 (831)
T PRK15180 97 QKKIMAYGFCLQINYLTRHFYEFFSQTERACMYWSLATQGNRHKLLAYLKDDPCFAGMSEDDRALLSNINVEQMDEHAIE 176 (831)
T ss_pred eeeEEeccchhhHHHHHHHHHHHhhhcchhhhhhhcccccchhHHHHHhhcChhhhhhhHhHHHHHHhhHhhcccHHHHH
Confidence 4567777876443 4457777778777666555566553 445566
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeC
Q 043205 69 ADLVGLIDIVAPNDEKMFVVGHD 91 (207)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~lvGhS 91 (207)
+|+.+++.-++ .+++.++-|.
T Consensus 177 eDmmeIVqLLG--k~rVvfVTHV 197 (831)
T PRK15180 177 QDMMEIVQLLG--RDRVMFMTHV 197 (831)
T ss_pred HHHHHHHHHhC--CCcEEEEEee
Confidence 78888888888 7899999995
No 328
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=29.80 E-value=1.4e+02 Score=20.16 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=29.7
Q ss_pred EEECCCCCChhhHHHHHHHHHh-CCCEEEEeCCCCC---ChhhhHHHHHHHHHHhC
Q 043205 28 LFLHGFPELWYSWRHQITALAS-LGYRAVAPDLRGY---TCFHGIADLVGLIDIVA 79 (207)
Q Consensus 28 vllHG~~~~~~~~~~~~~~l~~-~g~~v~~~D~~G~---~~~~~~~~~~~~~~~l~ 79 (207)
|++||-+|++... ++..+++ .++.++.+|..-. ......+.+..++++..
T Consensus 1 ill~G~~G~GKT~--l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTT--LARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHH--HHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeH--HHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 6899998887653 2222222 2677777776653 23445555666666653
No 329
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=29.56 E-value=1.9e+02 Score=19.89 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=46.7
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC-ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHH
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY-TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWF 99 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~-~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~ 99 (207)
.|+.-|| .-+......+..+....-.+.++++.-. +.+++.+.+.+.++.+.. .+.++++.==+||.....
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~viil~Dl~GGSp~n~ 74 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDS-GEGVLILTDLFGGSPNNA 74 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCcEEEEEeCCCCCHHHH
Confidence 5778888 4444455555666543346777776543 788888999999988863 356666665557776543
No 330
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.54 E-value=78 Score=19.79 Aligned_cols=30 Identities=23% Similarity=0.043 Sum_probs=16.9
Q ss_pred EECCCCCChhhHHHHHHHHHhC-CCEEEEeC
Q 043205 29 FLHGFPELWYSWRHQITALASL-GYRAVAPD 58 (207)
Q Consensus 29 llHG~~~~~~~~~~~~~~l~~~-g~~v~~~D 58 (207)
++.|.+.+...-..+...|.+. |.++...+
T Consensus 2 ~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~ 32 (87)
T cd04795 2 FVIGIGGSGAIAAYFALELLELTGIEVVALI 32 (87)
T ss_pred EEEEcCHHHHHHHHHHHHHhcccCCceEEeC
Confidence 4566666555545555555555 56665554
No 331
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=29.40 E-value=67 Score=25.29 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=22.1
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCC
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G 61 (207)
.-||+.|.|.+.. +..|+++||.|+.+|+.-
T Consensus 45 ~rvLvPgCGkg~D-----~~~LA~~G~~V~GvDlS~ 75 (226)
T PRK13256 45 SVCLIPMCGCSID-----MLFFLSKGVKVIGIELSE 75 (226)
T ss_pred CeEEEeCCCChHH-----HHHHHhCCCcEEEEecCH
Confidence 3556666665543 356788899999999853
No 332
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=29.02 E-value=50 Score=27.71 Aligned_cols=79 Identities=22% Similarity=0.210 Sum_probs=53.0
Q ss_pred CcEEEEECCCCCChh----hHHHHH-----------HHHHhCCCEEEEeCCC---CC-----------ChhhhHHHHHHH
Q 043205 24 GPVILFLHGFPELWY----SWRHQI-----------TALASLGYRAVAPDLR---GY-----------TCFHGIADLVGL 74 (207)
Q Consensus 24 ~~~lvllHG~~~~~~----~~~~~~-----------~~l~~~g~~v~~~D~~---G~-----------~~~~~~~~~~~~ 74 (207)
+|..+.+.|.++.+. .+..+- ..|.. ..++.+|-| |+ +.++.+.|+.++
T Consensus 31 ~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGaGfSyVdg~~~Y~~~~~qia~Dl~~l 108 (414)
T KOG1283|consen 31 RPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGAGFSYVDGSSAYTTNNKQIALDLVEL 108 (414)
T ss_pred CCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhh--ccEEEecCCCcCceeeecCcccccccHHHHHHHHHHH
Confidence 688899999876543 222211 11221 456666644 22 677889999998
Q ss_pred HHHhCC-----CCCcEEEEEeChhHHHHHHHHHhC
Q 043205 75 IDIVAP-----NDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 75 ~~~l~~-----~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
++.+-. +..|++++.-|.||-++..++...
T Consensus 109 lk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l 143 (414)
T KOG1283|consen 109 LKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALEL 143 (414)
T ss_pred HHHHHhcCccccccceEEEEhhcccchhhhhhhhH
Confidence 887632 256899999999999999887653
No 333
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=28.98 E-value=1.1e+02 Score=16.94 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=21.4
Q ss_pred CEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 52 YRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 52 ~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
..|..+|+.|| .-.+++..+++.+. .+.++++
T Consensus 7 a~v~~~~fSgH---ad~~~L~~~i~~~~--p~~vilV 38 (43)
T PF07521_consen 7 ARVEQIDFSGH---ADREELLEFIEQLN--PRKVILV 38 (43)
T ss_dssp SEEEESGCSSS----BHHHHHHHHHHHC--SSEEEEE
T ss_pred EEEEEEeecCC---CCHHHHHHHHHhcC--CCEEEEe
Confidence 56777787776 45567777888886 5555554
No 334
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=28.92 E-value=1.8e+02 Score=23.19 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=38.0
Q ss_pred CcEEEEECCCCCChhh----HHHHHHHHHhCCCEEEEeCCCC--CChhhhHHHHHHHHHHhC
Q 043205 24 GPVILFLHGFPELWYS----WRHQITALASLGYRAVAPDLRG--YTCFHGIADLVGLIDIVA 79 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~----~~~~~~~l~~~g~~v~~~D~~G--~~~~~~~~~~~~~~~~l~ 79 (207)
.|++++.||-.+.... -..+...+.+.|..+.....+| |+...+...+.+.++...
T Consensus 211 ~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~ 272 (275)
T TIGR02821 211 HSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSYYFIASFIADHLRHHA 272 (275)
T ss_pred CCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccchhHHHhHHHHHHHHH
Confidence 5788888997554222 1356677777787776666676 677777777777776654
No 335
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=28.85 E-value=1.3e+02 Score=23.94 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=27.9
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeC
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D 58 (207)
+.|+++.|-|.++.+=.-.+++|...|++|.++=
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEE
Confidence 4688888988888887788899988899877664
No 336
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=28.81 E-value=64 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=23.1
Q ss_pred EEEECCCCCChhhHHHHHHHHHhC-CCEEEEeCC
Q 043205 27 ILFLHGFPELWYSWRHQITALASL-GYRAVAPDL 59 (207)
Q Consensus 27 lvllHG~~~~~~~~~~~~~~l~~~-g~~v~~~D~ 59 (207)
+++|.|.++++.+- ++..|++. |+.++..|-
T Consensus 1 vI~I~G~~gsGKST--~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKST--LAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHH--HHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHH--HHHHHHHHHCCeEEEecc
Confidence 57889998887753 45566664 899888876
No 337
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=28.54 E-value=4.9e+02 Score=24.27 Aligned_cols=81 Identities=20% Similarity=0.121 Sum_probs=47.5
Q ss_pred CCcEEEEECCCCCC----------hhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeCh
Q 043205 23 QGPVILFLHGFPEL----------WYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDW 92 (207)
Q Consensus 23 ~~~~lvllHG~~~~----------~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~ 92 (207)
++-+||+.|..... ...+..+...|.++||+++.+ +++.+.+..-..-.++.+++-++-
T Consensus 47 ~~~~VL~YH~V~d~~~~~~~~~Vspe~Fe~qL~~Lk~nGY~~ISl-----------~el~~~~~g~~~LP~K~VaLTFDD 115 (671)
T PRK14582 47 NGFVAIAYHDVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSV-----------AQILEAHRGGKPLPEKAVLLTFDD 115 (671)
T ss_pred CceEEEEeCcccCCcccccccccCHHHHHHHHHHHHHCcCEEccH-----------HHHHHHHhcCCCCCCCeEEEEEEc
Confidence 35689999997532 236788889999999998865 333333332111135666666655
Q ss_pred h--H--HHHHHHHHhCCcccceEEEecc
Q 043205 93 G--A--FMAWFLCLFRPDRVKALVNMSV 116 (207)
Q Consensus 93 G--g--~ia~~~a~~~p~~v~~lv~~~~ 116 (207)
| . ..++-+..++. +.+.+++.+
T Consensus 116 Gy~s~yt~A~PILkkyg--vpATfFlvg 141 (671)
T PRK14582 116 GYSSFYTRVFPILQAFQ--WPAVWAPVG 141 (671)
T ss_pred CCCchHHHHHHHHHHcC--CCEEEEEec
Confidence 5 2 23444555553 555555443
No 338
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=28.47 E-value=1.2e+02 Score=21.47 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=22.9
Q ss_pred CEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCC
Q 043205 52 YRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTF 118 (207)
Q Consensus 52 ~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 118 (207)
--++.+|+.|.+...+......++..+ ...+...||++++++.++++|.
T Consensus 62 ~~~~iiD~~g~~~~~~~~~~~~~~k~~------------------~~~~~~~yP~rl~~i~iin~p~ 110 (159)
T PF00650_consen 62 GIVVIIDLSGFSLSNFDWWPISFLKKI------------------IQLLQDHYPERLGKIYIINAPW 110 (159)
T ss_dssp -EEEEEE-TT--HHHHHCHHHHHHHHH------------------HHHHHHHSTTTEEEEEEES--T
T ss_pred eEEEEEeCCCceEeccccchhhhhhhh------------------hhhhcccCCccceeEEEEecCh
Confidence 457888999986544431112222211 1223455777777777777554
No 339
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.24 E-value=2.5e+02 Score=22.80 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=56.3
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCE-EEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYR-AVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~-v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
|.++|.--.+--.+....+...+.+.|.. ++.+|+|= +..+++....++.+ .+.+.++.-+-.---.-.++..
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~----ee~~~~~~~~~~~g--i~~I~lvaPtt~~~rl~~i~~~ 169 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP----EESDELLKAAEKHG--IDPIFLVAPTTPDERLKKIAEA 169 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh----HHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHh
Confidence 55666555554555556677778777764 88999986 67778888888888 7888888777765555555554
Q ss_pred CCcccceEEEec
Q 043205 104 RPDRVKALVNMS 115 (207)
Q Consensus 104 ~p~~v~~lv~~~ 115 (207)
.. .+--++...
T Consensus 170 a~-GFiY~vs~~ 180 (265)
T COG0159 170 AS-GFIYYVSRM 180 (265)
T ss_pred CC-CcEEEEecc
Confidence 33 344444443
No 340
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=27.76 E-value=90 Score=25.25 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=34.9
Q ss_pred EEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 28 LFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 28 vllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
+++-|.+.+...-..+...|..-|.++..++-.+ . .. ..+..++ +.-++++.|..|..
T Consensus 133 I~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~-----~--~~-~~~~~~~---~~Dv~i~iS~sG~t 190 (281)
T COG1737 133 IYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTH-----G--QL-MQLALLT---PGDVVIAISFSGYT 190 (281)
T ss_pred EEEEEechhHHHHHHHHHHHHHcCCceeEecchH-----H--HH-HHHHhCC---CCCEEEEEeCCCCc
Confidence 4455677777666777788888888888875433 1 11 2334444 34456666666654
No 341
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=27.70 E-value=1e+02 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=21.4
Q ss_pred EEECCCCCChhh--HHHHHHHHHhCCCEEEEeCC
Q 043205 28 LFLHGFPELWYS--WRHQITALASLGYRAVAPDL 59 (207)
Q Consensus 28 vllHG~~~~~~~--~~~~~~~l~~~g~~v~~~D~ 59 (207)
.+..+-||.+.. -..++..|++.|++|+.+|+
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred EEEcCCCCccHHHHHHHHHhcccccccccccccc
Confidence 344444555443 35677888889999999998
No 342
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=27.60 E-value=1e+02 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhh--HHHHHHHHHhCCCEEEEeC
Q 043205 26 VILFLHGFPELWYS--WRHQITALASLGYRAVAPD 58 (207)
Q Consensus 26 ~lvllHG~~~~~~~--~~~~~~~l~~~g~~v~~~D 58 (207)
|+|++-|.|+++.. ...+...|.+.++.|..++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 68899999999764 3556777887888888876
No 343
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=27.54 E-value=2.2e+02 Score=23.49 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=32.0
Q ss_pred HHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 44 ITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 44 ~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
...+...+.+++.+|..+ ..+.+++.+..++++++ .+.++++
T Consensus 83 a~~~~~l~~~v~~~d~~~-Gv~~l~~al~~l~~~~~--iD~Ii~V 124 (297)
T PF06626_consen 83 ARVLRALGEPVYAFDPTG-GVQGLARALRELAEKLG--IDAIILV 124 (297)
T ss_pred HHHHHhcCCcEEEECCCC-CcHHHHHHHHHHHHHcC--CCEEEEE
Confidence 344444567799999877 77889999999999999 6666554
No 344
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=27.52 E-value=2e+02 Score=23.77 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=40.0
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCC----CC-----------------------------ChhhhHHHH
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR----GY-----------------------------TCFHGIADL 71 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~----G~-----------------------------~~~~~~~~~ 71 (207)
+++++|-|-++++..- ++-.|++++-.++..|-. |. +...+.++.
T Consensus 4 ~~ii~I~GpTasGKS~--LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKSN--ILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA 81 (300)
T ss_pred CcEEEEECCCccCHHH--HHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH
Confidence 4578888988877652 344444444467776632 22 667778888
Q ss_pred HHHHHHhCCCCCcEEEEEeC
Q 043205 72 VGLIDIVAPNDEKMFVVGHD 91 (207)
Q Consensus 72 ~~~~~~l~~~~~~~~lvGhS 91 (207)
.+.++.+....+..+++|-|
T Consensus 82 ~~~i~~i~~~gk~PilvGGT 101 (300)
T PRK14729 82 LKIIKELRQQKKIPIFVGGS 101 (300)
T ss_pred HHHHHHHHHCCCCEEEEeCc
Confidence 88888764323445666644
No 345
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=27.46 E-value=1.1e+02 Score=21.92 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=21.7
Q ss_pred EEEEECCCCCChhh--HHHHHHHHHhCCCEEEEe
Q 043205 26 VILFLHGFPELWYS--WRHQITALASLGYRAVAP 57 (207)
Q Consensus 26 ~lvllHG~~~~~~~--~~~~~~~l~~~g~~v~~~ 57 (207)
|+|.+-|..+++.. -+.++..|.++|+++.++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 46778888777654 377889999899998744
No 346
>KOG2730 consensus Methylase [General function prediction only]
Probab=27.31 E-value=1e+02 Score=24.46 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCC---ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCC
Q 043205 39 SWRHQITALASLGYRAVAPDLRGY---TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 39 ~~~~~~~~l~~~g~~v~~~D~~G~---~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
.|..+...+.+ | +..|.-|+ |++..+..+...+.... ..+.++...+-||.-+.+.|+++|
T Consensus 54 ~ryrlfsrfd~-g---i~md~e~wfsvTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~~ 117 (263)
T KOG2730|consen 54 NRYRLFSRFDS-G---IYMDREGWFSVTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQGP 117 (263)
T ss_pred HHHHHHHhhcc-c---eeecccceEEeccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhCC
Confidence 34444444433 3 77888887 88888888877766664 456777777777777788888887
No 347
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=27.13 E-value=2.5e+02 Score=22.04 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCC-ChhhhHHHHHHHHHHhCCCCCcEEEE
Q 043205 39 SWRHQITALASLGYRAVAPDLRGY-TCFHGIADLVGLIDIVAPNDEKMFVV 88 (207)
Q Consensus 39 ~~~~~~~~l~~~g~~v~~~D~~G~-~~~~~~~~~~~~~~~l~~~~~~~~lv 88 (207)
..+++...|.++|++|..+.+... +...+.+.+...+++.+ .+.+.++
T Consensus 50 aMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~--~~~~~~~ 98 (224)
T PF04244_consen 50 AMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHG--IDRLHVM 98 (224)
T ss_dssp HHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH------EEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcC--CCEEEEE
Confidence 456677888889999999988743 22356777878888877 5566554
No 348
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=27.00 E-value=4.1e+02 Score=22.88 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=52.0
Q ss_pred EEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeC---------hhHHH
Q 043205 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHD---------WGAFM 96 (207)
Q Consensus 26 ~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS---------~Gg~i 96 (207)
.|+..--++.+...-..+++.|.+.|..|..+++.- ++..++++.+. ..+-+++|-+ ++..+
T Consensus 250 ~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~-------~~~~eI~~~i~--~a~~~vvGsPT~~~~~~p~i~~~l 320 (388)
T COG0426 250 DLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLED-------ADPSEIVEEIL--DAKGLVVGSPTINGGAHPPIQTAL 320 (388)
T ss_pred EEEEecccCCHHHHHHHHHHHhhhcCCceEEEEccc-------CCHHHHHHHHh--hcceEEEecCcccCCCCchHHHHH
Confidence 344444566666677788888888899999998854 26666667666 5677888887 66666
Q ss_pred HHHHHHhCCccc
Q 043205 97 AWFLCLFRPDRV 108 (207)
Q Consensus 97 a~~~a~~~p~~v 108 (207)
....+...+.+.
T Consensus 321 ~~v~~~~~~~k~ 332 (388)
T COG0426 321 GYVLALAPKNKL 332 (388)
T ss_pred HHHHhccCcCce
Confidence 666666666544
No 349
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.29 E-value=3e+02 Score=21.08 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCcEEEEECCCCCChhhH-HHHHHHHHhC-CCEEEEeCCCCC------------------ChhhhHHH-----HHHHHHH
Q 043205 23 QGPVILFLHGFPELWYSW-RHQITALASL-GYRAVAPDLRGY------------------TCFHGIAD-----LVGLIDI 77 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~-~~~~~~l~~~-g~~v~~~D~~G~------------------~~~~~~~~-----~~~~~~~ 77 (207)
.++.|++|.-.+.....+ ..+...+.+. |+.+..++.... +...+.+. +.++++.
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 357899998877655443 5556777778 888888764311 11122222 2223332
Q ss_pred hCCCCCcEEEEEeChhHHHHHH
Q 043205 78 VAPNDEKMFVVGHDWGAFMAWF 99 (207)
Q Consensus 78 l~~~~~~~~lvGhS~Gg~ia~~ 99 (207)
.- .+...++|.|.|+.+...
T Consensus 110 ~~--~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 110 AL--ERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HH--HCCCEEEEECHhHHhhCC
Confidence 22 245789999999998766
No 350
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=26.18 E-value=1e+02 Score=25.43 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=19.3
Q ss_pred CCcEEEEEeChhHHHHHHHHHhCC
Q 043205 82 DEKMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
..+-++.|.|.|+.++..++....
T Consensus 96 l~~~~i~GtSaGAi~aa~~~~~~~ 119 (298)
T cd07206 96 LLPRVISGSSAGAIVAALLGTHTD 119 (298)
T ss_pred CCCCEEEEEcHHHHHHHHHHcCCc
Confidence 455679999999999998886543
No 351
>PRK02399 hypothetical protein; Provisional
Probab=25.83 E-value=4.4e+02 Score=22.85 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=53.9
Q ss_pred EEECCCCCChh-hHHHHHHHHHhCCCEEEEeCCC--C---C----------------------------ChhhhHHHHHH
Q 043205 28 LFLHGFPELWY-SWRHQITALASLGYRAVAPDLR--G---Y----------------------------TCFHGIADLVG 73 (207)
Q Consensus 28 vllHG~~~~~~-~~~~~~~~l~~~g~~v~~~D~~--G---~----------------------------~~~~~~~~~~~ 73 (207)
|++=|-.++.. ....+...+.+.|..|+.+|.- | + -++.+.+-...
T Consensus 6 I~iigT~DTK~~E~~yl~~~i~~~g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~~ga~~ 85 (406)
T PRK02399 6 IYIAGTLDTKGEELAYVKDLIEAAGLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMAEGAAA 85 (406)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHCCCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHHHHHHH
Confidence 34446555553 4455566666778888888862 1 1 11223333444
Q ss_pred HHHHhCC--CCCcEEEEEeChhHHHHHHHHHhCCcccceEEE
Q 043205 74 LIDIVAP--NDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVN 113 (207)
Q Consensus 74 ~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~ 113 (207)
++..+-. ..+-++-+|-|.|..++.......|-.+-+++.
T Consensus 86 ~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPiG~PKlmV 127 (406)
T PRK02399 86 FVRELYERGDVAGVIGLGGSGGTALATPAMRALPIGVPKLMV 127 (406)
T ss_pred HHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCCCCCeEEE
Confidence 5544322 255688899999999999988888876666654
No 352
>PLN02748 tRNA dimethylallyltransferase
Probab=25.23 E-value=3e+02 Score=24.35 Aligned_cols=66 Identities=20% Similarity=0.109 Sum_probs=40.5
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhC-CCEEEEeCC----CCC-----------------------------ChhhhHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASL-GYRAVAPDL----RGY-----------------------------TCFHGIA 69 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~-g~~v~~~D~----~G~-----------------------------~~~~~~~ 69 (207)
.+.+++|-|-++++..= ++..|+.. +..++..|- +|. +...+.+
T Consensus 21 ~~~~i~i~GptgsGKs~--la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~ 98 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSK--LAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRD 98 (468)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHH
Confidence 45688888988776542 33344443 455666662 332 6777788
Q ss_pred HHHHHHHHhCCCCCcEEEEEeC
Q 043205 70 DLVGLIDIVAPNDEKMFVVGHD 91 (207)
Q Consensus 70 ~~~~~~~~l~~~~~~~~lvGhS 91 (207)
+....++.+-...+-.++||-|
T Consensus 99 ~A~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 99 HAVPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHHHhcCCCeEEEcCh
Confidence 8888888764334456666644
No 353
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=25.04 E-value=2e+02 Score=23.38 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=14.4
Q ss_pred EEEeChhHHHHHHHHH
Q 043205 87 VVGHDWGAFMAWFLCL 102 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~ 102 (207)
+.|-|.||.+|..++.
T Consensus 45 i~GTStGgiiA~~la~ 60 (308)
T cd07211 45 ICGVSTGAILAFLLGL 60 (308)
T ss_pred EEecChhHHHHHHHhc
Confidence 7899999999998875
No 354
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.00 E-value=3.7e+02 Score=21.68 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=42.8
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCC-EEEEeCCCCC-C---hhhhHHHHH--HHHHHhCCCCCcEEE-EEeChh
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGY-RAVAPDLRGY-T---CFHGIADLV--GLIDIVAPNDEKMFV-VGHDWG 93 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~-~---~~~~~~~~~--~~~~~l~~~~~~~~l-vGhS~G 93 (207)
.+.||++=-|..++-..|...++.+...|- +++... +|. + .....-|+. ..+++.- .-++++ ..||.|
T Consensus 133 ~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~-rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~~D~sHs~G 208 (266)
T PRK13398 133 TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCE-RGIRTFETYTRNTLDLAAVAVIKELS--HLPIIVDPSHATG 208 (266)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEE-CCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEEEeCCCccc
Confidence 367999999999999999999998887665 444443 333 1 111222222 2333232 356777 799998
No 355
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=24.76 E-value=1.5e+02 Score=23.53 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.8
Q ss_pred EEEeChhHHHHHHHHHhCC
Q 043205 87 VVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 87 lvGhS~Gg~ia~~~a~~~p 105 (207)
+.|-|.|+.++..++...+
T Consensus 34 i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 34 ISGASAGALAACCLLCDLP 52 (245)
T ss_pred EEEEcHHHHHHHHHHhCCc
Confidence 9999999999999987654
No 356
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=24.73 E-value=68 Score=26.49 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.0
Q ss_pred EEEEeChhHHHHHHHHHhC
Q 043205 86 FVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 86 ~lvGhS~Gg~ia~~~a~~~ 104 (207)
.+.|-|.||.++..++..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 3789999999999988644
No 357
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=24.58 E-value=6.4e+02 Score=24.26 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=45.3
Q ss_pred CcEEEEECCCCCChhhHHH---HHHHHHhCCCEEEEeCCCCC--C---hhhhHHHHHHHHHHhCCCCCcEEEEEeChhHH
Q 043205 24 GPVILFLHGFPELWYSWRH---QITALASLGYRAVAPDLRGY--T---CFHGIADLVGLIDIVAPNDEKMFVVGHDWGAF 95 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~---~~~~l~~~g~~v~~~D~~G~--~---~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ 95 (207)
...+||+-|.+++...-+. ++..+.. -+.++.+|.+.. . -.........+.+.++ .+=+.+.|.+.+..
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a-~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lG--ae~~~l~~~dv~~~ 325 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHA-KWTAVYVETPELHRLSEKEARRLHENLRLAEELG--AEIVTLYGGDVAKA 325 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCC-CeEEEEEeccccccccHHHHHHHHHHHHHHHHhC--CeEEEEeCCcHHHH
Confidence 3578888888888765543 3344434 488888888775 1 1222334455667777 55666777777777
Q ss_pred HHH
Q 043205 96 MAW 98 (207)
Q Consensus 96 ia~ 98 (207)
++-
T Consensus 326 i~~ 328 (890)
T COG2205 326 IAR 328 (890)
T ss_pred HHH
Confidence 753
No 358
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=24.57 E-value=2.8e+02 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=28.8
Q ss_pred CcEEEEECCCCCC----hhhHHHHHHHHHhCCCEEEE------eCCCCC
Q 043205 24 GPVILFLHGFPEL----WYSWRHQITALASLGYRAVA------PDLRGY 62 (207)
Q Consensus 24 ~~~lvllHG~~~~----~~~~~~~~~~l~~~g~~v~~------~D~~G~ 62 (207)
...|++++|++.. .+..+.+.+.|.++|.+|-. =-+|||
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGRMPGH 354 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGH 354 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCc
Confidence 4689999999854 45567778888888877532 368898
No 359
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.46 E-value=4.8e+02 Score=22.83 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=41.9
Q ss_pred HHHHhCCCEEEEeCCCCCC--hhhhHHHHHHHHHHhCC-C-CCcEEEEEeChhHHHHHHHHHhCC-cccceEEEe
Q 043205 45 TALASLGYRAVAPDLRGYT--CFHGIADLVGLIDIVAP-N-DEKMFVVGHDWGAFMAWFLCLFRP-DRVKALVNM 114 (207)
Q Consensus 45 ~~l~~~g~~v~~~D~~G~~--~~~~~~~~~~~~~~l~~-~-~~~~~lvGhS~Gg~ia~~~a~~~p-~~v~~lv~~ 114 (207)
..+.+.++.++.+|-+|+. -....+.+..+++..+. + ...+.++--+.|..-...++..+. -.++++|+-
T Consensus 293 ~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlT 367 (432)
T PRK12724 293 ETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLT 367 (432)
T ss_pred HHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 3444458999999999983 34556666777666542 1 223444455555545556665553 246777764
No 360
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=24.41 E-value=3.7e+02 Score=21.49 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=22.4
Q ss_pred EEEEECCC--CCChhhHHHHHHHHHhCCCEEEEeCCC
Q 043205 26 VILFLHGF--PELWYSWRHQITALASLGYRAVAPDLR 60 (207)
Q Consensus 26 ~lvllHG~--~~~~~~~~~~~~~l~~~g~~v~~~D~~ 60 (207)
.+++++|. +|.......+.+.|.+.|+.|..+...
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 34555554 455555677788888888887766443
No 361
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=24.25 E-value=48 Score=24.47 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCChhhhHHHH----HHHHHHhCC--CCCcEEEEEeChhHH
Q 043205 61 GYTCFHGIADL----VGLIDIVAP--NDEKMFVVGHDWGAF 95 (207)
Q Consensus 61 G~~~~~~~~~~----~~~~~~l~~--~~~~~~lvGhS~Gg~ 95 (207)
|++...++.-+ ..+.+..+. ..+++.|+|.|++..
T Consensus 76 g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 76 GYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp TEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 34666677666 445555433 256899999999987
No 362
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=23.96 E-value=1.5e+02 Score=23.42 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=17.6
Q ss_pred EEEEeChhHHHHHHHHHhCC
Q 043205 86 FVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 86 ~lvGhS~Gg~ia~~~a~~~p 105 (207)
.++|-|.|+.++..++...+
T Consensus 34 ~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 34 RIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred EEEEEcHHHHHHHHHHhCCC
Confidence 79999999999999987654
No 363
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=23.57 E-value=2e+02 Score=21.68 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=11.0
Q ss_pred CcEEEEEeChhHHH
Q 043205 83 EKMFVVGHDWGAFM 96 (207)
Q Consensus 83 ~~~~lvGhS~Gg~i 96 (207)
...++||||+-.=+
T Consensus 101 ~~tILVGHsL~nDL 114 (174)
T cd06143 101 LGCIFVGHGLAKDF 114 (174)
T ss_pred CCCEEEeccchhHH
Confidence 56799999998743
No 364
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.55 E-value=3.6e+02 Score=21.04 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHh-CCCEEEEeCCCCC-ChhhhHHHHHHHHHHhCCCCCcEEEEEe
Q 043205 37 WYSWRHQITALAS-LGYRAVAPDLRGY-TCFHGIADLVGLIDIVAPNDEKMFVVGH 90 (207)
Q Consensus 37 ~~~~~~~~~~l~~-~g~~v~~~D~~G~-~~~~~~~~~~~~~~~l~~~~~~~~lvGh 90 (207)
...++.+++..-+ ....|+++|.... +.+...+++.++.++-+.+.--++|||.
T Consensus 81 QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 81 QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 3567777765544 3467888999876 7777778888887777632223556774
No 365
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=23.30 E-value=2.2e+02 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=11.7
Q ss_pred CCcEEEEEeChhHHH
Q 043205 82 DEKMFVVGHDWGAFM 96 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~i 96 (207)
..+++++=|+.=|..
T Consensus 136 ~~~l~lvIHnIDg~~ 150 (326)
T PF04084_consen 136 PPPLYLVIHNIDGPS 150 (326)
T ss_pred CCceEEEEECCCChh
Confidence 468999999887665
No 366
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=23.20 E-value=1.3e+02 Score=22.08 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=23.0
Q ss_pred CEEEEeCCCCC--ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhH
Q 043205 52 YRAVAPDLRGY--TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGA 94 (207)
Q Consensus 52 ~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg 94 (207)
-.+++.|.+|. +-.++++.+..+.. -+ .+-+.++|-+.|=
T Consensus 66 ~~~i~LDe~Gk~~sS~~fA~~l~~~~~-~g--~~i~FvIGGa~G~ 107 (153)
T TIGR00246 66 AHVVTLDIPGKPWTTPQLADTLEKWKT-DG--RDVTLLIGGPEGL 107 (153)
T ss_pred CeEEEEcCCCCcCCHHHHHHHHHHHhc-cC--CeEEEEEcCCCcC
Confidence 45777888886 55566666655522 12 2334466776663
No 367
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.16 E-value=2.3e+02 Score=21.92 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=43.0
Q ss_pred HHHHhCCCEEEEeCCCCC-ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 45 TALASLGYRAVAPDLRGY-TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 45 ~~l~~~g~~v~~~D~~G~-~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
+...+.|...+.+|...| +-+.+..++.+.++..+ .+=+++.|+= -.+...+..+++. +++.+-|+..|
T Consensus 44 erA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~--~dlvvLAGyM--rIL~~~fl~~~~g---rIlNIHPSLLP 113 (200)
T COG0299 44 ERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYG--PDLVVLAGYM--RILGPEFLSRFEG---RILNIHPSLLP 113 (200)
T ss_pred HHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcC--CCEEEEcchH--HHcCHHHHHHhhc---ceEecCccccc
Confidence 344456777788888877 66778888888888888 5666666641 1222333444443 45666665554
No 368
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=23.00 E-value=2.6e+02 Score=24.18 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred CcEEEEECCCCCC---hhhHHHHHHHHHhC--CCEEEEeCCCCCC---hhhhHHHHHHHHHHhCC---CCCcEEEEEeCh
Q 043205 24 GPVILFLHGFPEL---WYSWRHQITALASL--GYRAVAPDLRGYT---CFHGIADLVGLIDIVAP---NDEKMFVVGHDW 92 (207)
Q Consensus 24 ~~~lvllHG~~~~---~~~~~~~~~~l~~~--g~~v~~~D~~G~~---~~~~~~~~~~~~~~l~~---~~~~~~lvGhS~ 92 (207)
+|.++++...+.+ +.+...++..+.++ |..|+.+.-+|+. ...+..-+..+++.+.. ...+++++|.-.
T Consensus 97 ~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~ 176 (427)
T PRK02842 97 NISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLA 176 (427)
T ss_pred CCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCC
Confidence 5778888877654 45677777777665 7889999999982 22233334445544432 245688899755
Q ss_pred hH
Q 043205 93 GA 94 (207)
Q Consensus 93 Gg 94 (207)
-+
T Consensus 177 ~~ 178 (427)
T PRK02842 177 DV 178 (427)
T ss_pred cc
Confidence 44
No 369
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=22.99 E-value=1.4e+02 Score=23.80 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=33.9
Q ss_pred EEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHH
Q 043205 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFM 96 (207)
Q Consensus 27 lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~i 96 (207)
-|++.|.+.+...-..+...|...|..+...+-. ......+..++ .+. +++..|..|..
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~--------~~~~~~~~~~~--~~D-v~I~iS~sg~~ 188 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDM--------HALLATVQALS--PDD-LLLAISYSGER 188 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCCh--------HHHHHHHHhCC--CCC-EEEEEcCCCCC
Confidence 3677788877666666677777777777664211 11222334454 333 46666777643
No 370
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.96 E-value=96 Score=24.50 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=26.5
Q ss_pred EEEEECCCCCChhh--HHHHHHHHHhCCCEEEEeCC
Q 043205 26 VILFLHGFPELWYS--WRHQITALASLGYRAVAPDL 59 (207)
Q Consensus 26 ~lvllHG~~~~~~~--~~~~~~~l~~~g~~v~~~D~ 59 (207)
+++++.|+++++.. -..++..|.+++++++...-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 58899999988764 26678888888888877654
No 371
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.89 E-value=5.2e+02 Score=22.64 Aligned_cols=76 Identities=7% Similarity=-0.013 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHh-CCCEEEEeCCCCCCh--hhhHHHHHHHHHHhCCCCCcEEEE-EeChhHHHHHHHHHhCC-cccceE
Q 043205 37 WYSWRHQITALAS-LGYRAVAPDLRGYTC--FHGIADLVGLIDIVAPNDEKMFVV-GHDWGAFMAWFLCLFRP-DRVKAL 111 (207)
Q Consensus 37 ~~~~~~~~~~l~~-~g~~v~~~D~~G~~~--~~~~~~~~~~~~~l~~~~~~~~lv-GhS~Gg~ia~~~a~~~p-~~v~~l 111 (207)
...+...+..+.+ .++.++.+|-+|.+. ....+.+.++++... ...++|+ .-+.++.-....+..+. -.+.++
T Consensus 305 ~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~--PdevlLVLsATtk~~d~~~i~~~F~~~~idgl 382 (436)
T PRK11889 305 EAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE--PDYICLTLSASMKSKDMIEIITNFKDIHIDGI 382 (436)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC--CCeEEEEECCccChHHHHHHHHHhcCCCCCEE
Confidence 3444444555553 369999999999833 334455555655544 3445554 34466666666666543 357777
Q ss_pred EEe
Q 043205 112 VNM 114 (207)
Q Consensus 112 v~~ 114 (207)
|+-
T Consensus 383 I~T 385 (436)
T PRK11889 383 VFT 385 (436)
T ss_pred EEE
Confidence 764
No 372
>PRK06193 hypothetical protein; Provisional
Probab=22.86 E-value=1.3e+02 Score=23.35 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHhCCCCCcEEEEEeCh
Q 043205 64 CFHGIADLVGLIDIVAPNDEKMFVVGHDW 92 (207)
Q Consensus 64 ~~~~~~~~~~~~~~l~~~~~~~~lvGhS~ 92 (207)
.+.+.+++.++++.+....+.+.+|||.-
T Consensus 137 ~~~y~~~l~~~I~~l~~~~~~vLlVgHnp 165 (206)
T PRK06193 137 NALLKAGLRPLLTTPPDPGTNTVLVGHDD 165 (206)
T ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEeCch
Confidence 34456777778887764466899999995
No 373
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.51 E-value=1.9e+02 Score=17.86 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=19.5
Q ss_pred EECCCCCChhh--HHHHHHHHHhCCCEEEEeC
Q 043205 29 FLHGFPELWYS--WRHQITALASLGYRAVAPD 58 (207)
Q Consensus 29 llHG~~~~~~~--~~~~~~~l~~~g~~v~~~D 58 (207)
++-|.++.+.. -..++..|++.|+++..+|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 34454444432 3566778888899998887
No 374
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=2.6e+02 Score=19.03 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=43.4
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCC--CCCcEEEEEeChhHHHHHHHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAP--NDEKMFVVGHDWGAFMAWFLC 101 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~--~~~~~~lvGhS~Gg~ia~~~a 101 (207)
.|+|+|.--++.-...-..+...+.. .+.|+-+|...+. .++...+..+.. ....+++-|.+.||.--+...
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v-~~~vvELD~~~~g-----~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGV-NPKVVELDEDEDG-----SEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCC-CCEEEEccCCCCc-----HHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 57888877555544444444444322 3778888776532 244444444432 144566779999998765555
Q ss_pred HhC
Q 043205 102 LFR 104 (207)
Q Consensus 102 ~~~ 104 (207)
...
T Consensus 88 h~~ 90 (104)
T KOG1752|consen 88 HKS 90 (104)
T ss_pred HHc
Confidence 443
No 375
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=22.35 E-value=4.4e+02 Score=21.59 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=44.5
Q ss_pred ECCCCCChhhHHHHHHHHHhCCCEEEE------eCCCCC----ChhhhHHHHHHHHHHhCC----CCCcEEEEEe----C
Q 043205 30 LHGFPELWYSWRHQITALASLGYRAVA------PDLRGY----TCFHGIADLVGLIDIVAP----NDEKMFVVGH----D 91 (207)
Q Consensus 30 lHG~~~~~~~~~~~~~~l~~~g~~v~~------~D~~G~----~~~~~~~~~~~~~~~l~~----~~~~~~lvGh----S 91 (207)
+||.-++.. ....++..|++|++ .+++|| ....-.+++.++++.+.. ..-+.++.|. +
T Consensus 11 v~G~vGn~A----A~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~ 86 (281)
T COG2240 11 VYGSVGNSA----AIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAE 86 (281)
T ss_pred eecccccHh----HHHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHH
Confidence 456655543 24566677887665 478888 222223344444444332 0335666665 3
Q ss_pred hhHHHHHHHHHhCCcccceEEEeccCCCC
Q 043205 92 WGAFMAWFLCLFRPDRVKALVNMSVTFDH 120 (207)
Q Consensus 92 ~Gg~ia~~~a~~~p~~v~~lv~~~~~~~~ 120 (207)
.+-.++-.+....-+..+.+++++|..-.
T Consensus 87 qv~~i~~~v~~vk~~~P~~~~l~DPVMGD 115 (281)
T COG2240 87 QVRAIAGIVKAVKEANPNALYLCDPVMGD 115 (281)
T ss_pred HHHHHHHHHHHHhccCCCeEEEeCCcccC
Confidence 33344333333222335677888865543
No 376
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=22.26 E-value=1.4e+02 Score=18.74 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=19.1
Q ss_pred hCCCEEEEeCCCCC-----ChhhhHHHHHHHHH
Q 043205 49 SLGYRAVAPDLRGY-----TCFHGIADLVGLID 76 (207)
Q Consensus 49 ~~g~~v~~~D~~G~-----~~~~~~~~~~~~~~ 76 (207)
+.+|-+..+|+||. |.++..+.+.+.++
T Consensus 13 dg~y~~~~Pdlpgc~s~G~T~eea~~n~~eai~ 45 (73)
T COG1598 13 DGGYVASVPDLPGCHSQGETLEEALQNAKEAIE 45 (73)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH
Confidence 45789999999997 55555555544443
No 377
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=22.22 E-value=1.7e+02 Score=21.10 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.3
Q ss_pred CcEEEEEeChhHHHHHHHH
Q 043205 83 EKMFVVGHDWGAFMAWFLC 101 (207)
Q Consensus 83 ~~~~lvGhS~Gg~ia~~~a 101 (207)
..-.+.|.|.|+.++..++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 4556889999999999888
No 378
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=22.18 E-value=5e+02 Score=22.71 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=45.4
Q ss_pred CChhhHHHHHHHHHhCCCEEEEe-CCCCC-ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHH
Q 043205 35 ELWYSWRHQITALASLGYRAVAP-DLRGY-TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 35 ~~~~~~~~~~~~l~~~g~~v~~~-D~~G~-~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~ 102 (207)
.+-..|..++..|.+.|...+++ |+.|. ++...-+-+..+-+.++ -++.+-.|+..|+-.+.+.+
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~---~pv~lHtH~TsG~a~m~ylk 219 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP---VPVELHTHATSGMAEMTYLK 219 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC---CeeEEecccccchHHHHHHH
Confidence 45568889999999888876665 89998 44333333333333343 68999999999988776644
No 379
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=22.18 E-value=3.9e+02 Score=24.90 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCcEEEEECCCCCC----------hhhHHHHHHHHHhCCCEEEEeC
Q 043205 23 QGPVILFLHGFPEL----------WYSWRHQITALASLGYRAVAPD 58 (207)
Q Consensus 23 ~~~~lvllHG~~~~----------~~~~~~~~~~l~~~g~~v~~~D 58 (207)
++.+||+.|..... ...+..+...|.++||+++.+|
T Consensus 47 ~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe~QL~~Lk~nGY~~VSL~ 92 (672)
T PRK14581 47 NTFVVIAYHDVEDDSADQRYLSVRSSALNEQFVWLRDNGYHVVSVD 92 (672)
T ss_pred CceEEEEeCcccCCCCccCccccCHHHHHHHHHHHHHCcCEEecHH
Confidence 35689999997543 2467888899999999998764
No 380
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=21.49 E-value=4.3e+02 Score=21.17 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=43.3
Q ss_pred CCcEEEEECCCCCChhhHHHHHHHHHhCCC-EEEEeCCCCC-Ch---hhhHHHHH--HHHHHhCCCCCcEEE-EEeChh
Q 043205 23 QGPVILFLHGFPELWYSWRHQITALASLGY-RAVAPDLRGY-TC---FHGIADLV--GLIDIVAPNDEKMFV-VGHDWG 93 (207)
Q Consensus 23 ~~~~lvllHG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~-~~---~~~~~~~~--~~~~~l~~~~~~~~l-vGhS~G 93 (207)
.+.||++--|...+-..|...++.+.+.|- +++.... |. +. ....-|+. ..+++.- .-++.+ .+||.|
T Consensus 131 ~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~r-G~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~~ds~Hs~G 206 (260)
T TIGR01361 131 QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCER-GIRTFEKATRNTLDLSAVPVLKKET--HLPIIVDPSHAAG 206 (260)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEC-CCCCCCCCCcCCcCHHHHHHHHHhh--CCCEEEcCCCCCC
Confidence 367999999999999999999999987765 4444432 32 11 11122222 2223322 357888 899988
No 381
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=21.27 E-value=78 Score=26.33 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=14.8
Q ss_pred EEEEEeChhHHHHHHHHH
Q 043205 85 MFVVGHDWGAFMAWFLCL 102 (207)
Q Consensus 85 ~~lvGhS~Gg~ia~~~a~ 102 (207)
-.++|||+|-+.++.++.
T Consensus 126 ~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAG 143 (343)
T ss_pred CeeeeccHHHHHHHHHhC
Confidence 357999999998887764
No 382
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=21.07 E-value=4e+02 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=19.7
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhC-CCEEEEeCC
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASL-GYRAVAPDL 59 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~-g~~v~~~D~ 59 (207)
.+.++++-|-++++.. .++..|++. +..++..|-
T Consensus 3 ~~~~i~i~GptgsGKt--~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKT--ALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHH--HHHHHHHHhCCCcEEeccc
Confidence 3568888888877654 233444433 445555554
No 383
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.99 E-value=5.1e+02 Score=21.86 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCEEEEeCCCCC--ChhhhHHHHHHHHHHhCCC----CCcEEEEEeChhHHHHHHHHHhCCc--ccceEE
Q 043205 41 RHQITALASLGYRAVAPDLRGY--TCFHGIADLVGLIDIVAPN----DEKMFVVGHDWGAFMAWFLCLFRPD--RVKALV 112 (207)
Q Consensus 41 ~~~~~~l~~~g~~v~~~D~~G~--~~~~~~~~~~~~~~~l~~~----~~~~~lvGhS~Gg~ia~~~a~~~p~--~v~~lv 112 (207)
..-+.+..++|+.++.+|-.|. +-..+.+.+.++.+-++.. ...+.++--+.-|.-++.-|..+.+ .+.++|
T Consensus 211 fDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiI 290 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGII 290 (340)
T ss_pred HHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEE
Confidence 3445666667899999999996 7777777777777776642 1226666688888888888876654 467777
Q ss_pred Ee
Q 043205 113 NM 114 (207)
Q Consensus 113 ~~ 114 (207)
+-
T Consensus 291 lT 292 (340)
T COG0552 291 LT 292 (340)
T ss_pred EE
Confidence 64
No 384
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=20.99 E-value=2e+02 Score=18.89 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=17.0
Q ss_pred EEEEC-CEEEEEEeeCCCcEEEEECCCCCC
Q 043205 8 IVKVN-GINMHVAEKGQGPVILFLHGFPEL 36 (207)
Q Consensus 8 ~v~~~-g~~i~~~~~g~~~~lvllHG~~~~ 36 (207)
.+.++ +.++-|... ++..+|++||+--.
T Consensus 51 R~r~g~~yRiif~~~-~~~~vvll~gf~Kk 79 (95)
T TIGR02683 51 RIDFGPGYRVYFTQR-GKVIILLLCGGDKS 79 (95)
T ss_pred EecCCCCEEEEEEEE-CCEEEEEEeCEecc
Confidence 34445 556655444 45688899987533
No 385
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=20.97 E-value=5.6e+02 Score=22.25 Aligned_cols=80 Identities=14% Similarity=0.048 Sum_probs=51.2
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHhC
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLFR 104 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~~ 104 (207)
.-|.+.-..+.+.. ...+..|.+.|.+|++. +|.+.+++-..+...++..+ .++-+++ +-||.++..+...+
T Consensus 61 A~v~~~~~np~stq--d~vaa~l~~~gi~v~a~--~~~~~~~y~~~~~~~l~~~~--~~p~~i~--DdGg~~~~~~~~~~ 132 (413)
T cd00401 61 AEVRWSSCNIFSTQ--DHAAAAIAAAGIPVFAW--KGETLEEYWWCIEQALKFPD--GEPNMIL--DDGGDLTLLIHKKH 132 (413)
T ss_pred CEEEEEcCCCccch--HHHHHHHHhcCceEEEE--cCCCHHHHHHHHHHHHhccC--CCCcEEE--ecchHHHHHHHhhh
Confidence 34444444454432 35677888878887765 66677777777777777644 3555555 88999888877766
Q ss_pred CcccceEE
Q 043205 105 PDRVKALV 112 (207)
Q Consensus 105 p~~v~~lv 112 (207)
|+..+.++
T Consensus 133 ~~~~~~~~ 140 (413)
T cd00401 133 PELLPGIR 140 (413)
T ss_pred hhhhhccE
Confidence 65544443
No 386
>PLN02591 tryptophan synthase
Probab=20.85 E-value=4.4e+02 Score=21.04 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=50.9
Q ss_pred cEEEEECCCCCChhhHHHHHHHHHhCCC-EEEEeCCCCCChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh
Q 043205 25 PVILFLHGFPELWYSWRHQITALASLGY-RAVAPDLRGYTCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF 103 (207)
Q Consensus 25 ~~lvllHG~~~~~~~~~~~~~~l~~~g~-~v~~~D~~G~~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~ 103 (207)
|.++|.--.+--.+....+...+.+.|. -++.+|+|- +...++.+.++..+ .+.+.++.-+.----...++..
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~----ee~~~~~~~~~~~g--l~~I~lv~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPL----EETEALRAEAAKNG--IELVLLTTPTTPTERMKAIAEA 153 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCH----HHHHHHHHHHHHcC--CeEEEEeCCCCCHHHHHHHHHh
Confidence 4455443333334556677888888876 588999974 55567777777777 7788888777765444555555
Q ss_pred CCccc
Q 043205 104 RPDRV 108 (207)
Q Consensus 104 ~p~~v 108 (207)
.+..+
T Consensus 154 ~~gFI 158 (250)
T PLN02591 154 SEGFV 158 (250)
T ss_pred CCCcE
Confidence 55433
No 387
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=20.76 E-value=3.5e+02 Score=24.67 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=26.5
Q ss_pred CcEEEEECCCCCCh---hhHHHHHHHHHhCCCEEEEeCCCCC
Q 043205 24 GPVILFLHGFPELW---YSWRHQITALASLGYRAVAPDLRGY 62 (207)
Q Consensus 24 ~~~lvllHG~~~~~---~~~~~~~~~l~~~g~~v~~~D~~G~ 62 (207)
+.|+++|||....- ..-..+...|..+|..+-..-+|+-
T Consensus 551 ~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e 592 (620)
T COG1506 551 KTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDE 592 (620)
T ss_pred CCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCC
Confidence 56899999986543 2334566778777887666655553
No 388
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=20.71 E-value=3.3e+02 Score=19.50 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCEEEEeCCCCC----------ChhhhHHHHHHHHHHhCCCCCcEEEEEeChhHHHHHHHHHh-CCcccceEEEeccC
Q 043205 51 GYRAVAPDLRGY----------TCFHGIADLVGLIDIVAPNDEKMFVVGHDWGAFMAWFLCLF-RPDRVKALVNMSVT 117 (207)
Q Consensus 51 g~~v~~~D~~G~----------~~~~~~~~~~~~~~~l~~~~~~~~lvGhS~Gg~ia~~~a~~-~p~~v~~lv~~~~~ 117 (207)
+-.++.+|.|.. ........+.+.+..++. ..++++++.| | ..+..++.. .....+.+..+.++
T Consensus 9 ~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l~~-~~~vVv~c~~-g-~~a~~aa~~L~~~G~~~v~~L~GG 83 (145)
T cd01535 9 GGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKLPA-AERYVLTCGS-S-LLARFAAADLAALTVKPVFVLEGG 83 (145)
T ss_pred CCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhcCC-CCCEEEEeCC-C-hHHHHHHHHHHHcCCcCeEEecCc
Confidence 456777887663 111123445556666653 4678888777 4 333333322 11224455555544
No 389
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=20.70 E-value=2.2e+02 Score=19.97 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=9.6
Q ss_pred HHHHhCCCEEEEe
Q 043205 45 TALASLGYRAVAP 57 (207)
Q Consensus 45 ~~l~~~g~~v~~~ 57 (207)
..|.+.|+.|+.+
T Consensus 101 ~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 101 SRLQELGWRVLRV 113 (117)
T ss_pred HHHHHCcCEEEEE
Confidence 4667778988765
No 390
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.66 E-value=3e+02 Score=19.88 Aligned_cols=57 Identities=21% Similarity=0.104 Sum_probs=38.4
Q ss_pred HHHHHhCCC-EEEEeCCCCC---ChhhhHHHHHHHHHHhCCCCCcEEEEEeC-hhHHHHHHHHHh
Q 043205 44 ITALASLGY-RAVAPDLRGY---TCFHGIADLVGLIDIVAPNDEKMFVVGHD-WGAFMAWFLCLF 103 (207)
Q Consensus 44 ~~~l~~~g~-~v~~~D~~G~---~~~~~~~~~~~~~~~l~~~~~~~~lvGhS-~Gg~ia~~~a~~ 103 (207)
...+...|. +++.++.+.. +.+.+++-+.+++++.+ ..++++|++ .|.-++.++|.+
T Consensus 51 ~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~---~~lVl~~~t~~g~~la~~lA~~ 112 (164)
T PF01012_consen 51 RKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEG---PDLVLFGSTSFGRDLAPRLAAR 112 (164)
T ss_dssp HHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHH
T ss_pred hhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcC---CCEEEEcCcCCCCcHHHHHHHH
Confidence 344554565 5777766654 67778888999999876 458888885 566677777765
No 391
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=20.61 E-value=1.8e+02 Score=23.22 Aligned_cols=22 Identities=23% Similarity=-0.017 Sum_probs=18.0
Q ss_pred cEEEEEeChhHHHHHHHHHhCC
Q 043205 84 KMFVVGHDWGAFMAWFLCLFRP 105 (207)
Q Consensus 84 ~~~lvGhS~Gg~ia~~~a~~~p 105 (207)
.-.++|-|.|+.++..++...+
T Consensus 37 ~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 37 ARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CCeEEEEcHHHHHHHHHHcCCC
Confidence 3458899999999999887654
No 392
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=20.49 E-value=3.8e+02 Score=23.89 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=51.1
Q ss_pred CCcEEEEECCCCCCh--hhHHHHHHHHHhCCCEEEEeCCCCCChhhhHHH-HHHHHHHhCCCCCcEEEEEeChhHHHH
Q 043205 23 QGPVILFLHGFPELW--YSWRHQITALASLGYRAVAPDLRGYTCFHGIAD-LVGLIDIVAPNDEKMFVVGHDWGAFMA 97 (207)
Q Consensus 23 ~~~~lvllHG~~~~~--~~~~~~~~~l~~~g~~v~~~D~~G~~~~~~~~~-~~~~~~~l~~~~~~~~lvGhS~Gg~ia 97 (207)
+.|+||++.|+-+++ ..-..+...|..+|++|..+..|. .++...+ +-.+-.++.. .+.+.++--||=+-+.
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~--~eE~~~~flwRfw~~lP~-~G~I~IFdRSWY~~vl 112 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS--DEERERPPMWRFWRRLPP-KGKIGIFFGSWYTRPL 112 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC--HHHhcCcHHHHHHHhCCC-CCeEEEEcCcccchhh
Confidence 368999999986554 455778888888899999998885 2333333 5556666764 5678888777755554
No 393
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=20.35 E-value=1.7e+02 Score=24.33 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=39.5
Q ss_pred EEECCCCCC-hhhHHHHHHHHHhCCCEEEEeCCCCC-----------------ChhhhHHHHHHHHHHhCCCCCcEEEEE
Q 043205 28 LFLHGFPEL-WYSWRHQITALASLGYRAVAPDLRGY-----------------TCFHGIADLVGLIDIVAPNDEKMFVVG 89 (207)
Q Consensus 28 vllHG~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~-----------------~~~~~~~~~~~~~~~l~~~~~~~~lvG 89 (207)
|.+.+.... ......++..+.+.+.+.+++|.-+- .......|+.++++.+. ...+.+++
T Consensus 2 iYlt~~~a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~--e~gIY~IA 79 (316)
T PF13200_consen 2 IYLTAYSAGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLK--EHGIYPIA 79 (316)
T ss_pred EEechhhcCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHH--HCCCEEEE
Confidence 345555433 35677888888888999999998763 22223477888888887 34444443
No 394
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=20.15 E-value=2.9e+02 Score=21.19 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=11.0
Q ss_pred CCcEEEEEeChhHHH
Q 043205 82 DEKMFVVGHDWGAFM 96 (207)
Q Consensus 82 ~~~~~lvGhS~Gg~i 96 (207)
.-+.+++-||+||..
T Consensus 123 ~~~~~~i~~slgGGT 137 (216)
T PF00091_consen 123 SLDGFFIVHSLGGGT 137 (216)
T ss_dssp TESEEEEEEESSSSH
T ss_pred ccccceeccccccee
Confidence 456788888887763
No 395
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=20.04 E-value=3.3e+02 Score=22.24 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=43.6
Q ss_pred CcEEEEECCCCCChhhHHHHHHHHHhCCCEEEEeCCCCC----ChhhhHHHHHH--HHHHhCCCCCcEEE-EEeChhHH
Q 043205 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGY----TCFHGIADLVG--LIDIVAPNDEKMFV-VGHDWGAF 95 (207)
Q Consensus 24 ~~~lvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~----~~~~~~~~~~~--~~~~l~~~~~~~~l-vGhS~Gg~ 95 (207)
+.|||+--|++.+...|-.-++++..+|-.=+..=-||- ......-|+.. +++++. .=|+++ ..|++|=-
T Consensus 152 ~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVivDpSH~~Grr 228 (286)
T COG2876 152 NKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIVDPSHATGRR 228 (286)
T ss_pred CCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEECCCCcccch
Confidence 679999999999999999999999887654333333443 11222233333 233333 335554 67888854
Done!