Query 043209
Match_columns 221
No_of_seqs 142 out of 1217
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 7.2E-56 1.6E-60 369.2 24.9 210 9-219 2-213 (300)
2 PLN03013 cysteine synthase 100.0 5.3E-55 1.2E-59 382.3 26.6 214 7-220 112-325 (429)
3 PLN02565 cysteine synthase 100.0 1.1E-54 2.3E-59 372.3 27.0 214 7-220 4-217 (322)
4 PLN00011 cysteine synthase 100.0 1.4E-53 3E-58 366.1 27.3 219 2-220 1-219 (323)
5 PLN02556 cysteine synthase/L-3 100.0 1E-53 2.2E-58 371.5 26.3 214 7-220 48-261 (368)
6 PRK11761 cysM cysteine synthas 100.0 1.6E-53 3.5E-58 361.6 25.5 209 8-218 2-210 (296)
7 TIGR01138 cysM cysteine syntha 100.0 2.8E-52 6E-57 353.2 26.4 205 12-218 2-206 (290)
8 TIGR01136 cysKM cysteine synth 100.0 7.6E-52 1.6E-56 352.2 26.7 206 13-219 2-207 (299)
9 COG1171 IlvA Threonine dehydra 100.0 1.5E-52 3.3E-57 355.1 19.2 208 4-218 11-218 (347)
10 TIGR01139 cysK cysteine syntha 100.0 3.1E-51 6.7E-56 348.3 26.6 205 13-219 2-207 (298)
11 PRK07476 eutB threonine dehydr 100.0 1.7E-51 3.7E-56 353.2 20.5 206 3-217 4-209 (322)
12 PRK08526 threonine dehydratase 100.0 2.5E-51 5.4E-56 360.6 21.1 206 3-217 5-210 (403)
13 PLN02970 serine racemase 100.0 4.8E-51 1E-55 351.1 22.5 205 4-217 13-217 (328)
14 PRK10717 cysteine synthase A; 100.0 1.9E-50 4.2E-55 347.9 26.0 207 8-215 3-216 (330)
15 PRK08198 threonine dehydratase 100.0 5.6E-51 1.2E-55 359.9 21.7 206 3-217 7-212 (404)
16 PRK08638 threonine dehydratase 100.0 7.4E-51 1.6E-55 350.1 20.6 206 3-217 12-217 (333)
17 KOG1252 Cystathionine beta-syn 100.0 6.1E-51 1.3E-55 338.8 18.2 219 3-221 37-258 (362)
18 PRK06382 threonine dehydratase 100.0 1.9E-50 4.2E-55 356.2 21.8 204 4-216 11-214 (406)
19 TIGR02991 ectoine_eutB ectoine 100.0 3.2E-50 6.9E-55 344.4 22.4 206 3-217 4-209 (317)
20 PRK12483 threonine dehydratase 100.0 2.4E-50 5.3E-55 362.2 22.4 199 11-217 30-228 (521)
21 PRK06110 hypothetical protein; 100.0 3E-50 6.4E-55 345.5 21.7 205 4-217 7-211 (322)
22 cd01561 CBS_like CBS_like: Thi 100.0 2.2E-49 4.7E-54 336.0 25.9 200 17-217 1-202 (291)
23 PLN02356 phosphateglycerate ki 100.0 1.9E-49 4.1E-54 347.2 26.0 209 7-216 42-291 (423)
24 PRK07048 serine/threonine dehy 100.0 3.6E-50 7.9E-55 345.0 20.7 205 3-216 9-213 (321)
25 TIGR02079 THD1 threonine dehyd 100.0 8.7E-50 1.9E-54 352.0 21.4 207 4-218 2-211 (409)
26 PRK07334 threonine dehydratase 100.0 4.7E-50 1E-54 353.6 19.5 207 3-218 8-214 (403)
27 PRK08639 threonine dehydratase 100.0 8.3E-50 1.8E-54 353.5 20.1 207 3-217 10-221 (420)
28 cd01562 Thr-dehyd Threonine de 100.0 1.5E-49 3.3E-54 338.7 21.0 206 3-217 2-207 (304)
29 PRK06815 hypothetical protein; 100.0 1E-49 2.2E-54 341.6 19.9 208 2-218 4-211 (317)
30 PRK06608 threonine dehydratase 100.0 2.3E-49 5E-54 341.5 21.6 205 3-216 8-212 (338)
31 PRK06352 threonine synthase; V 100.0 2.6E-49 5.5E-54 343.0 20.9 203 7-219 17-225 (351)
32 TIGR01137 cysta_beta cystathio 100.0 9.2E-49 2E-53 350.6 25.0 206 9-215 2-210 (454)
33 PLN02550 threonine dehydratase 100.0 3.3E-49 7.1E-54 357.2 22.3 199 11-217 102-300 (591)
34 cd06448 L-Ser-dehyd Serine deh 100.0 2.7E-49 5.8E-54 338.6 20.4 197 18-218 1-200 (316)
35 cd06447 D-Ser-dehyd D-Serine d 100.0 4.7E-49 1E-53 344.6 22.2 198 16-216 50-286 (404)
36 TIGR01124 ilvA_2Cterm threonin 100.0 4.2E-49 9.2E-54 354.1 21.7 200 11-218 10-209 (499)
37 TIGR01127 ilvA_1Cterm threonin 100.0 4.3E-49 9.2E-54 345.5 21.1 190 19-217 1-190 (380)
38 PRK08246 threonine dehydratase 100.0 1.3E-48 2.9E-53 333.6 21.3 201 3-218 8-208 (310)
39 PRK06381 threonine synthase; V 100.0 3E-48 6.6E-53 332.9 23.1 195 13-216 10-213 (319)
40 PRK09224 threonine dehydratase 100.0 1.3E-48 2.7E-53 352.1 21.7 199 11-217 13-211 (504)
41 PRK08197 threonine synthase; V 100.0 2.2E-48 4.7E-53 342.2 21.5 198 11-217 72-278 (394)
42 KOG1250 Threonine/serine dehyd 100.0 1E-48 2.2E-53 330.6 18.3 203 7-217 55-257 (457)
43 PRK08813 threonine dehydratase 100.0 5.3E-48 1.1E-52 332.5 22.5 194 4-216 25-218 (349)
44 PRK02991 D-serine dehydratase; 100.0 7E-48 1.5E-52 340.8 22.9 199 16-217 73-310 (441)
45 PRK07409 threonine synthase; V 100.0 7.7E-48 1.7E-52 334.4 22.1 200 10-219 23-229 (353)
46 PRK07591 threonine synthase; V 100.0 8.2E-48 1.8E-52 340.6 21.9 199 11-217 82-289 (421)
47 PRK06721 threonine synthase; R 100.0 2.4E-47 5.3E-52 330.9 22.7 206 4-219 14-225 (352)
48 TIGR02035 D_Ser_am_lyase D-ser 100.0 3.1E-47 6.7E-52 335.6 22.9 199 15-216 67-304 (431)
49 PRK06450 threonine synthase; V 100.0 4.1E-47 8.9E-52 327.1 22.1 186 11-217 51-243 (338)
50 cd01563 Thr-synth_1 Threonine 100.0 2.6E-47 5.7E-52 327.7 20.9 198 10-217 14-219 (324)
51 PRK05638 threonine synthase; V 100.0 5.3E-47 1.2E-51 337.7 22.2 194 12-217 60-259 (442)
52 PRK06260 threonine synthase; V 100.0 4.7E-47 1E-51 334.0 21.0 196 11-216 60-264 (397)
53 PLN02569 threonine synthase 100.0 1.5E-46 3.2E-51 335.8 23.3 201 12-217 127-337 (484)
54 cd00640 Trp-synth-beta_II Tryp 100.0 1.7E-45 3.8E-50 304.6 24.4 187 19-210 1-188 (244)
55 PRK08329 threonine synthase; V 100.0 1.1E-45 2.4E-50 320.0 22.7 189 12-217 58-252 (347)
56 PRK08206 diaminopropionate amm 100.0 1.9E-45 4.2E-50 323.3 20.9 210 4-217 28-271 (399)
57 KOG1251 Serine racemase [Signa 100.0 2E-44 4.3E-49 287.9 16.2 205 2-215 9-213 (323)
58 TIGR00260 thrC threonine synth 100.0 5.1E-44 1.1E-48 307.8 19.1 203 4-216 9-221 (328)
59 TIGR01747 diampropi_NH3ly diam 100.0 3.1E-43 6.7E-48 306.7 21.5 206 7-217 12-250 (376)
60 KOG1481 Cysteine synthase [Ami 100.0 2.2E-43 4.7E-48 286.7 15.7 206 8-214 39-253 (391)
61 PRK13028 tryptophan synthase s 100.0 2.6E-42 5.6E-47 301.9 23.7 204 12-220 55-282 (402)
62 TIGR01415 trpB_rel pyridoxal-p 100.0 4.8E-42 1E-46 302.4 24.3 201 11-220 61-293 (419)
63 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.6E-42 3.4E-47 304.1 20.9 201 14-218 37-270 (396)
64 PRK03910 D-cysteine desulfhydr 100.0 2.7E-42 5.8E-47 297.3 20.2 202 9-216 6-224 (331)
65 TIGR01275 ACC_deam_rel pyridox 100.0 4.9E-42 1.1E-46 293.5 20.8 192 15-213 4-207 (311)
66 PRK04346 tryptophan synthase s 100.0 7.6E-42 1.6E-46 298.6 22.2 196 13-213 52-263 (397)
67 PRK12391 tryptophan synthase s 100.0 1.6E-41 3.5E-46 299.5 24.1 204 10-219 69-301 (427)
68 PLN02618 tryptophan synthase, 100.0 1.2E-41 2.7E-46 297.8 23.2 198 11-213 58-276 (410)
69 TIGR00263 trpB tryptophan synt 100.0 1.2E-41 2.5E-46 298.3 22.9 196 13-213 44-255 (385)
70 PRK13802 bifunctional indole-3 100.0 3.7E-41 8.1E-46 309.6 24.3 201 12-217 319-541 (695)
71 cd06446 Trp-synth_B Tryptophan 100.0 3.1E-41 6.8E-46 294.0 22.6 196 17-218 33-244 (365)
72 PF00291 PALP: Pyridoxal-phosp 100.0 5.4E-42 1.2E-46 291.9 16.2 194 12-217 1-207 (306)
73 cd06449 ACCD Aminocyclopropane 100.0 3E-41 6.4E-46 288.2 19.8 192 19-216 1-215 (307)
74 TIGR01274 ACC_deam 1-aminocycl 100.0 6.9E-41 1.5E-45 289.2 21.5 203 8-216 4-229 (337)
75 PRK12390 1-aminocyclopropane-1 100.0 7.9E-41 1.7E-45 288.9 20.5 204 8-217 5-231 (337)
76 PRK14045 1-aminocyclopropane-1 100.0 7.5E-41 1.6E-45 288.0 19.9 201 6-212 9-221 (329)
77 TIGR03844 cysteate_syn cysteat 100.0 8.3E-41 1.8E-45 293.2 18.9 196 13-217 57-267 (398)
78 PRK13803 bifunctional phosphor 100.0 2.2E-39 4.8E-44 297.6 22.2 196 13-213 265-475 (610)
79 COG0498 ThrC Threonine synthas 100.0 5.5E-35 1.2E-39 254.8 17.0 198 11-217 69-277 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 1.5E-29 3.2E-34 209.4 16.4 195 13-212 50-259 (396)
81 COG2515 Acd 1-aminocyclopropan 100.0 1.3E-28 2.8E-33 203.1 17.2 201 8-214 5-219 (323)
82 PRK09225 threonine synthase; V 99.9 7.8E-25 1.7E-29 194.8 18.6 177 18-209 88-279 (462)
83 cd01560 Thr-synth_2 Threonine 99.9 3.4E-24 7.5E-29 190.8 20.7 181 18-212 87-284 (460)
84 COG1350 Predicted alternative 99.9 7.5E-25 1.6E-29 182.0 15.0 201 13-219 72-302 (432)
85 KOG1395 Tryptophan synthase be 99.9 4.8E-25 1E-29 184.6 12.1 204 5-213 108-328 (477)
86 COG3048 DsdA D-serine dehydrat 99.8 1.9E-19 4.1E-24 148.8 12.5 204 13-219 73-315 (443)
87 PF03808 Glyco_tran_WecB: Glyc 93.4 0.67 1.4E-05 36.2 8.4 101 82-188 13-114 (172)
88 PRK13656 trans-2-enoyl-CoA red 92.6 5.1 0.00011 35.6 13.4 58 40-100 13-73 (398)
89 cd06533 Glyco_transf_WecG_TagA 91.4 2.1 4.6E-05 33.3 8.9 121 82-209 11-132 (171)
90 PRK12743 oxidoreductase; Provi 90.9 3.4 7.3E-05 33.8 10.1 54 70-123 3-58 (256)
91 PF07279 DUF1442: Protein of u 90.8 5.8 0.00013 32.2 10.9 56 59-117 34-94 (218)
92 COG0604 Qor NADPH:quinone redu 90.2 3.7 8E-05 35.4 10.1 57 63-122 137-193 (326)
93 PF05368 NmrA: NmrA-like famil 90.1 8.3 0.00018 31.0 11.7 51 73-124 2-52 (233)
94 PF00107 ADH_zinc_N: Zinc-bind 90.0 4.8 0.0001 29.0 9.4 40 82-124 3-42 (130)
95 KOG0025 Zn2+-binding dehydroge 89.5 4.3 9.4E-05 34.6 9.4 88 34-124 124-217 (354)
96 cd08230 glucose_DH Glucose deh 89.2 3.6 7.7E-05 35.5 9.4 54 66-120 170-223 (355)
97 COG0800 Eda 2-keto-3-deoxy-6-p 89.1 11 0.00023 30.6 11.4 132 52-197 26-172 (211)
98 PRK08226 short chain dehydroge 88.9 7 0.00015 31.9 10.6 54 70-123 7-60 (263)
99 PRK12481 2-deoxy-D-gluconate 3 88.9 8.4 0.00018 31.4 11.0 73 69-142 8-81 (251)
100 PRK08862 short chain dehydroge 88.9 7 0.00015 31.6 10.4 72 70-141 6-79 (227)
101 PRK06139 short chain dehydroge 88.5 5.7 0.00012 34.2 10.1 71 70-140 8-80 (330)
102 PRK08628 short chain dehydroge 88.4 9.3 0.0002 31.0 11.0 55 70-124 8-62 (258)
103 TIGR00696 wecB_tagA_cpsF bacte 88.1 5.3 0.00011 31.4 8.8 98 83-187 14-112 (177)
104 TIGR01064 pyruv_kin pyruvate k 87.9 17 0.00037 33.2 13.1 122 84-212 261-406 (473)
105 TIGR03201 dearomat_had 6-hydro 87.9 9.4 0.0002 32.8 11.1 56 62-121 160-215 (349)
106 PRK07478 short chain dehydroge 87.9 8.8 0.00019 31.1 10.5 72 70-141 7-80 (254)
107 TIGR02819 fdhA_non_GSH formald 87.6 10 0.00023 33.5 11.4 55 63-120 180-234 (393)
108 PRK08643 acetoin reductase; Va 87.6 9.9 0.00021 30.8 10.6 54 70-123 3-57 (256)
109 KOG1201 Hydroxysteroid 17-beta 87.5 8.7 0.00019 32.8 10.1 73 69-142 38-112 (300)
110 cd08294 leukotriene_B4_DH_like 87.3 13 0.00028 31.2 11.5 58 62-122 137-194 (329)
111 PRK08993 2-deoxy-D-gluconate 3 86.3 16 0.00036 29.6 11.9 71 70-141 11-82 (253)
112 PRK07523 gluconate 5-dehydroge 86.2 13 0.00028 30.2 10.6 54 70-123 11-65 (255)
113 PRK05866 short chain dehydroge 86.0 12 0.00025 31.5 10.4 33 70-102 41-73 (293)
114 PRK09424 pntA NAD(P) transhydr 85.5 26 0.00056 32.4 13.0 53 68-124 164-216 (509)
115 PRK08063 enoyl-(acyl carrier p 85.4 18 0.00038 29.1 11.4 54 70-123 5-60 (250)
116 TIGR03366 HpnZ_proposed putati 85.3 8.9 0.00019 31.9 9.3 53 66-121 118-170 (280)
117 PRK05557 fabG 3-ketoacyl-(acyl 85.2 17 0.00037 28.9 11.2 54 70-123 6-61 (248)
118 PRK07666 fabG 3-ketoacyl-(acyl 85.2 17 0.00036 29.1 10.7 53 70-122 8-61 (239)
119 PRK15408 autoinducer 2-binding 85.1 24 0.00052 30.4 16.8 45 163-210 198-243 (336)
120 PRK06194 hypothetical protein; 84.8 18 0.00039 29.9 11.0 55 70-124 7-62 (287)
121 PF00764 Arginosuc_synth: Argi 84.7 14 0.0003 32.8 10.4 126 74-207 2-138 (388)
122 KOG2862 Alanine-glyoxylate ami 84.6 18 0.00039 31.3 10.5 87 71-157 69-157 (385)
123 PRK03562 glutathione-regulated 84.4 27 0.00059 33.0 13.0 52 71-125 401-452 (621)
124 PRK12826 3-ketoacyl-(acyl-carr 84.1 19 0.00041 28.8 10.6 54 70-123 7-61 (251)
125 PRK12938 acetyacetyl-CoA reduc 84.1 18 0.00038 29.1 10.4 53 70-122 4-58 (246)
126 PRK12823 benD 1,6-dihydroxycyc 83.9 13 0.00028 30.2 9.5 73 70-142 9-82 (260)
127 PRK07791 short chain dehydroge 83.8 21 0.00045 29.8 10.9 32 69-100 6-37 (286)
128 PRK08278 short chain dehydroge 83.7 23 0.0005 29.2 11.6 54 70-123 7-68 (273)
129 PRK05993 short chain dehydroge 83.4 21 0.00046 29.5 10.8 68 69-140 4-71 (277)
130 PF01041 DegT_DnrJ_EryC1: DegT 83.3 4.1 8.9E-05 35.5 6.6 88 71-158 41-130 (363)
131 PRK03659 glutathione-regulated 83.2 31 0.00067 32.5 12.8 51 72-125 402-452 (601)
132 TIGR03451 mycoS_dep_FDH mycoth 83.1 18 0.00038 31.3 10.5 57 62-121 170-226 (358)
133 PRK08303 short chain dehydroge 83.1 23 0.0005 30.0 11.0 73 70-142 9-93 (305)
134 PF00070 Pyr_redox: Pyridine n 83.1 9.4 0.0002 25.2 7.0 49 73-121 2-59 (80)
135 TIGR00670 asp_carb_tr aspartat 82.6 9 0.00019 32.8 8.3 60 63-124 145-209 (301)
136 KOG0024 Sorbitol dehydrogenase 82.5 7.9 0.00017 33.5 7.7 63 58-123 159-221 (354)
137 PRK06181 short chain dehydroge 82.5 21 0.00045 29.0 10.3 54 70-123 2-56 (263)
138 cd08256 Zn_ADH2 Alcohol dehydr 82.5 26 0.00055 30.0 11.3 57 62-121 168-224 (350)
139 PRK09880 L-idonate 5-dehydroge 82.3 12 0.00025 32.2 9.0 53 66-121 167-219 (343)
140 PRK05854 short chain dehydroge 82.2 19 0.00042 30.5 10.2 72 70-142 15-91 (313)
141 cd08281 liver_ADH_like1 Zinc-d 81.8 16 0.00035 31.7 9.9 57 62-121 185-241 (371)
142 cd01075 NAD_bind_Leu_Phe_Val_D 81.8 24 0.00051 28.2 10.0 67 50-120 6-76 (200)
143 PRK06182 short chain dehydroge 81.7 25 0.00054 28.8 10.6 68 70-141 4-71 (273)
144 TIGR02825 B4_12hDH leukotriene 81.6 9.8 0.00021 32.2 8.3 58 62-122 132-189 (325)
145 PF00106 adh_short: short chai 81.5 19 0.00041 26.9 9.1 71 71-141 2-77 (167)
146 PRK06701 short chain dehydroge 81.4 30 0.00064 29.0 11.0 54 70-123 47-102 (290)
147 PRK08703 short chain dehydroge 81.2 26 0.00055 28.1 10.3 32 70-101 7-38 (239)
148 PRK07806 short chain dehydroge 81.1 27 0.00058 28.0 11.1 54 70-123 7-62 (248)
149 PRK10669 putative cation:proto 81.0 47 0.001 30.8 13.1 52 71-125 418-469 (558)
150 cd08295 double_bond_reductase_ 81.0 32 0.0007 29.2 11.3 57 62-121 145-202 (338)
151 PRK07774 short chain dehydroge 80.7 28 0.0006 27.9 10.5 32 70-101 7-38 (250)
152 PRK07062 short chain dehydroge 80.3 30 0.00065 28.1 10.6 33 70-102 9-41 (265)
153 PF01210 NAD_Gly3P_dh_N: NAD-d 80.1 4.2 9E-05 31.0 4.9 41 73-116 2-42 (157)
154 PRK06947 glucose-1-dehydrogena 79.8 24 0.00052 28.3 9.7 54 70-123 3-58 (248)
155 TIGR02822 adh_fam_2 zinc-bindi 79.6 12 0.00025 32.1 8.1 56 62-121 159-214 (329)
156 PF09837 DUF2064: Uncharacteri 79.5 22 0.00047 26.0 8.8 96 86-187 3-99 (122)
157 cd08274 MDR9 Medium chain dehy 79.4 25 0.00054 29.8 10.1 56 62-121 171-226 (350)
158 PRK05653 fabG 3-ketoacyl-(acyl 79.4 29 0.00063 27.5 10.9 54 70-123 6-60 (246)
159 PRK05650 short chain dehydroge 79.4 32 0.00069 28.1 10.5 52 71-122 2-54 (270)
160 PRK06138 short chain dehydroge 79.2 31 0.00067 27.6 10.7 31 70-100 6-36 (252)
161 cd08233 butanediol_DH_like (2R 79.1 26 0.00057 29.9 10.2 58 62-122 166-223 (351)
162 COG2130 Putative NADP-dependen 79.0 23 0.00049 30.6 9.2 58 61-121 143-201 (340)
163 PF13561 adh_short_C2: Enoyl-( 78.9 8.4 0.00018 31.1 6.7 64 77-141 4-69 (241)
164 PRK06935 2-deoxy-D-gluconate 3 78.9 24 0.00051 28.7 9.5 72 70-141 16-88 (258)
165 PLN03154 putative allyl alcoho 78.8 41 0.00089 29.0 11.3 56 63-121 153-209 (348)
166 PRK08340 glucose-1-dehydrogena 78.7 34 0.00073 27.8 10.5 29 72-100 3-31 (259)
167 PRK06348 aspartate aminotransf 78.7 44 0.00096 29.1 12.2 83 72-155 91-175 (384)
168 COG1064 AdhP Zn-dependent alco 78.6 18 0.0004 31.5 8.8 61 60-124 158-218 (339)
169 PF11760 CbiG_N: Cobalamin syn 78.4 5.3 0.00011 27.4 4.4 49 168-216 4-52 (84)
170 KOG0023 Alcohol dehydrogenase, 78.3 22 0.00049 30.8 9.0 60 61-124 175-234 (360)
171 PRK13394 3-hydroxybutyrate deh 77.8 26 0.00056 28.3 9.4 55 70-124 8-63 (262)
172 cd06324 PBP1_ABC_sugar_binding 77.7 40 0.00088 28.1 17.9 78 130-211 159-240 (305)
173 PRK07231 fabG 3-ketoacyl-(acyl 77.5 35 0.00075 27.3 11.1 33 70-102 6-38 (251)
174 PRK08589 short chain dehydroge 77.4 21 0.00045 29.5 8.7 74 69-142 6-80 (272)
175 PRK12828 short chain dehydroge 77.3 30 0.00065 27.3 9.5 57 69-125 7-64 (239)
176 PRK06720 hypothetical protein; 77.2 31 0.00068 26.6 10.9 73 70-142 17-91 (169)
177 TIGR00561 pntA NAD(P) transhyd 77.1 51 0.0011 30.5 11.7 50 72-124 166-215 (511)
178 PRK10309 galactitol-1-phosphat 76.8 20 0.00044 30.6 8.8 57 62-121 154-210 (347)
179 PRK07109 short chain dehydroge 76.7 20 0.00044 30.8 8.8 72 70-141 9-82 (334)
180 PRK12771 putative glutamate sy 76.6 7.4 0.00016 36.2 6.4 54 67-121 135-206 (564)
181 PRK06197 short chain dehydroge 76.5 43 0.00094 28.0 10.6 33 70-102 17-49 (306)
182 PRK07832 short chain dehydroge 76.3 25 0.00055 28.8 9.0 30 71-100 2-31 (272)
183 KOG1205 Predicted dehydrogenas 76.1 34 0.00074 29.1 9.6 72 70-142 13-89 (282)
184 TIGR01832 kduD 2-deoxy-D-gluco 76.0 34 0.00073 27.4 9.5 71 70-141 6-77 (248)
185 cd08293 PTGR2 Prostaglandin re 76.0 48 0.001 28.1 11.4 58 63-123 147-208 (345)
186 cd08289 MDR_yhfp_like Yhfp put 75.8 28 0.00061 29.1 9.3 49 69-120 147-195 (326)
187 cd08300 alcohol_DH_class_III c 75.7 21 0.00046 30.9 8.7 57 62-121 180-236 (368)
188 PLN02740 Alcohol dehydrogenase 75.6 22 0.00047 31.1 8.8 57 62-121 192-248 (381)
189 TIGR02818 adh_III_F_hyde S-(hy 75.4 23 0.0005 30.7 8.9 57 62-121 179-235 (368)
190 cd08277 liver_alcohol_DH_like 75.3 21 0.00045 30.9 8.5 57 62-121 178-234 (365)
191 cd00401 AdoHcyase S-adenosyl-L 75.2 16 0.00034 32.8 7.7 53 64-120 197-249 (413)
192 PRK07097 gluconate 5-dehydroge 75.0 25 0.00053 28.7 8.5 72 70-141 11-84 (265)
193 PF00185 OTCace: Aspartate/orn 75.0 18 0.00039 27.7 7.2 45 79-123 13-65 (158)
194 cd08301 alcohol_DH_plants Plan 74.8 24 0.00051 30.5 8.8 56 63-121 182-237 (369)
195 cd08292 ETR_like_2 2-enoyl thi 74.6 37 0.0008 28.3 9.7 55 62-119 133-187 (324)
196 PF02826 2-Hacid_dh_C: D-isome 74.6 22 0.00047 27.6 7.7 114 72-210 38-153 (178)
197 COG1063 Tdh Threonine dehydrog 74.2 58 0.0013 28.3 13.9 52 72-125 171-223 (350)
198 cd08296 CAD_like Cinnamyl alco 74.0 48 0.001 28.1 10.3 53 65-121 160-212 (333)
199 PRK06079 enoyl-(acyl carrier p 73.6 25 0.00055 28.6 8.2 32 70-101 8-41 (252)
200 TIGR01751 crot-CoA-red crotony 73.5 30 0.00064 30.4 9.1 55 64-121 185-239 (398)
201 cd08239 THR_DH_like L-threonin 73.5 55 0.0012 27.7 10.8 57 62-121 157-213 (339)
202 PRK07550 hypothetical protein; 73.1 62 0.0014 28.1 12.5 52 72-124 92-143 (386)
203 PRK02610 histidinol-phosphate 73.0 30 0.00065 30.1 9.0 84 73-156 94-182 (374)
204 PRK05396 tdh L-threonine 3-deh 72.9 31 0.00066 29.3 8.9 52 67-121 162-213 (341)
205 cd08285 NADP_ADH NADP(H)-depen 72.8 49 0.0011 28.2 10.2 56 62-120 160-215 (351)
206 PRK06114 short chain dehydroge 72.8 49 0.0011 26.7 10.1 54 70-123 9-64 (254)
207 PRK08277 D-mannonate oxidoredu 72.7 36 0.00079 27.9 9.1 55 70-124 11-66 (278)
208 PRK08261 fabG 3-ketoacyl-(acyl 72.7 50 0.0011 29.5 10.5 71 69-141 210-281 (450)
209 cd08291 ETR_like_1 2-enoyl thi 72.7 48 0.001 27.9 10.0 51 70-123 144-195 (324)
210 PRK14030 glutamate dehydrogena 72.6 32 0.00069 31.2 9.0 59 50-108 208-274 (445)
211 cd08242 MDR_like Medium chain 72.5 28 0.0006 29.2 8.5 56 62-121 149-204 (319)
212 COG0078 ArgF Ornithine carbamo 72.5 25 0.00055 30.1 7.9 95 24-124 113-214 (310)
213 PRK08017 oxidoreductase; Provi 72.3 49 0.0011 26.6 9.7 53 70-125 3-55 (256)
214 PRK05876 short chain dehydroge 71.5 34 0.00073 28.4 8.6 73 69-141 6-80 (275)
215 PRK07063 short chain dehydroge 71.5 53 0.0011 26.6 10.7 32 70-101 8-39 (260)
216 cd08297 CAD3 Cinnamyl alcohol 71.4 39 0.00084 28.6 9.2 53 65-120 162-214 (341)
217 COG2242 CobL Precorrin-6B meth 71.3 38 0.00083 26.9 8.2 58 66-124 32-91 (187)
218 PRK07201 short chain dehydroge 70.9 48 0.001 31.1 10.4 54 69-122 371-425 (657)
219 cd08288 MDR_yhdh Yhdh putative 70.8 43 0.00094 27.9 9.3 50 68-120 146-195 (324)
220 PRK06172 short chain dehydroge 70.7 41 0.00089 27.0 8.9 55 70-124 8-63 (253)
221 PF08659 KR: KR domain; Inter 70.6 44 0.00096 25.8 8.6 71 72-142 3-79 (181)
222 PRK05826 pyruvate kinase; Prov 70.6 85 0.0018 28.7 11.4 123 84-212 263-406 (465)
223 PRK12779 putative bifunctional 70.3 31 0.00067 34.4 9.2 32 71-102 307-338 (944)
224 PRK12939 short chain dehydroge 69.9 45 0.00098 26.6 8.9 55 70-124 8-63 (250)
225 PRK05693 short chain dehydroge 69.8 60 0.0013 26.5 10.2 67 71-141 3-69 (274)
226 PRK07035 short chain dehydroge 69.8 47 0.001 26.7 9.0 72 70-141 9-82 (252)
227 cd08246 crotonyl_coA_red croto 69.5 25 0.00054 30.7 7.7 54 65-121 190-243 (393)
228 PRK07792 fabG 3-ketoacyl-(acyl 69.4 49 0.0011 27.9 9.3 56 70-125 13-70 (306)
229 PRK12937 short chain dehydroge 69.4 56 0.0012 26.0 9.5 72 70-141 6-80 (245)
230 PRK06483 dihydromonapterin red 69.3 56 0.0012 26.0 10.1 69 70-141 3-71 (236)
231 PRK12935 acetoacetyl-CoA reduc 69.1 48 0.001 26.5 8.9 56 70-125 7-64 (247)
232 PRK08217 fabG 3-ketoacyl-(acyl 69.1 45 0.00099 26.6 8.7 55 70-124 6-61 (253)
233 PTZ00354 alcohol dehydrogenase 69.0 67 0.0015 26.8 10.4 55 64-121 136-190 (334)
234 TIGR00692 tdh L-threonine 3-de 68.9 50 0.0011 28.0 9.3 52 66-120 159-210 (340)
235 TIGR01316 gltA glutamate synth 68.9 28 0.00062 31.3 8.1 50 72-121 274-328 (449)
236 cd08278 benzyl_alcohol_DH Benz 68.7 72 0.0016 27.5 10.4 56 63-121 181-236 (365)
237 COG0300 DltE Short-chain dehyd 68.4 40 0.00088 28.3 8.3 72 70-141 7-81 (265)
238 cd06313 PBP1_ABC_sugar_binding 68.1 61 0.0013 26.4 9.5 47 163-212 172-219 (272)
239 PRK07454 short chain dehydroge 67.9 52 0.0011 26.2 8.9 72 70-141 7-80 (241)
240 PRK06841 short chain dehydroge 67.9 52 0.0011 26.4 8.9 33 70-102 16-48 (255)
241 PRK06505 enoyl-(acyl carrier p 67.8 59 0.0013 26.9 9.3 71 70-141 8-82 (271)
242 PF02887 PK_C: Pyruvate kinase 67.8 38 0.00082 24.3 7.2 80 54-142 6-87 (117)
243 COG2894 MinD Septum formation 67.6 63 0.0014 26.8 8.8 120 83-214 21-149 (272)
244 PRK12429 3-hydroxybutyrate deh 67.4 58 0.0013 26.1 9.1 55 70-124 5-60 (258)
245 PRK06124 gluconate 5-dehydroge 67.3 50 0.0011 26.6 8.7 72 69-140 11-84 (256)
246 PLN02827 Alcohol dehydrogenase 67.2 48 0.001 28.9 9.0 57 62-121 187-243 (378)
247 PRK12748 3-ketoacyl-(acyl-carr 67.0 66 0.0014 26.0 10.8 32 70-101 6-39 (256)
248 cd08244 MDR_enoyl_red Possible 66.9 73 0.0016 26.4 10.0 55 62-119 136-190 (324)
249 PF04127 DFP: DNA / pantothena 66.7 53 0.0011 25.9 8.3 63 71-142 21-83 (185)
250 cd08287 FDH_like_ADH3 formalde 66.5 80 0.0017 26.7 11.0 56 63-121 163-218 (345)
251 PRK05867 short chain dehydroge 66.5 58 0.0012 26.3 8.9 72 70-141 10-83 (253)
252 PRK08085 gluconate 5-dehydroge 66.4 54 0.0012 26.4 8.7 72 70-141 10-83 (254)
253 PRK09147 succinyldiaminopimela 66.4 90 0.0019 27.3 12.7 109 44-155 64-179 (396)
254 PRK07024 short chain dehydroge 66.4 69 0.0015 25.9 9.5 32 70-101 3-34 (257)
255 PRK07890 short chain dehydroge 66.3 56 0.0012 26.2 8.8 55 69-123 5-60 (258)
256 TIGR02095 glgA glycogen/starch 66.2 52 0.0011 29.6 9.3 29 76-104 17-45 (473)
257 COG0299 PurN Folate-dependent 65.9 45 0.00099 26.7 7.6 91 73-174 5-102 (200)
258 PRK07814 short chain dehydroge 65.8 55 0.0012 26.6 8.7 53 70-122 11-64 (263)
259 PRK06463 fabG 3-ketoacyl-(acyl 65.7 70 0.0015 25.8 10.7 69 70-141 8-76 (255)
260 cd05282 ETR_like 2-enoyl thioe 65.3 68 0.0015 26.6 9.4 53 63-118 133-185 (323)
261 PRK07370 enoyl-(acyl carrier p 65.3 74 0.0016 25.9 10.7 72 70-142 7-85 (258)
262 PRK10083 putative oxidoreducta 65.1 62 0.0014 27.3 9.2 58 61-121 153-211 (339)
263 cd08299 alcohol_DH_class_I_II_ 65.1 54 0.0012 28.5 8.9 54 62-118 184-237 (373)
264 PF02310 B12-binding: B12 bind 65.0 24 0.00051 25.1 5.7 93 83-185 18-114 (121)
265 PF02887 PK_C: Pyruvate kinase 64.8 20 0.00044 25.7 5.2 44 163-212 6-49 (117)
266 COG1751 Uncharacterized conser 64.8 63 0.0014 24.9 8.7 75 44-123 7-90 (186)
267 cd08250 Mgc45594_like Mgc45594 64.7 83 0.0018 26.3 10.4 55 63-120 134-188 (329)
268 PRK07984 enoyl-(acyl carrier p 64.7 79 0.0017 26.0 10.6 71 70-141 7-81 (262)
269 PRK06484 short chain dehydroge 64.6 1.1E+02 0.0023 27.8 11.1 86 67-184 3-88 (520)
270 PLN00175 aminotransferase fami 64.3 1E+02 0.0022 27.3 12.4 83 73-156 118-201 (413)
271 PTZ00079 NADP-specific glutama 64.0 62 0.0013 29.5 9.0 51 50-101 217-268 (454)
272 PRK12384 sorbitol-6-phosphate 64.0 76 0.0016 25.6 10.7 32 70-101 3-34 (259)
273 cd06278 PBP1_LacI_like_2 Ligan 63.9 74 0.0016 25.4 17.2 43 166-211 166-213 (266)
274 PRK12809 putative oxidoreducta 63.8 52 0.0011 31.2 9.0 51 71-121 311-379 (639)
275 PRK03692 putative UDP-N-acetyl 63.6 60 0.0013 26.9 8.4 70 108-187 97-169 (243)
276 PRK11706 TDP-4-oxo-6-deoxy-D-g 63.6 42 0.00092 29.2 8.0 54 72-125 48-101 (375)
277 PRK06200 2,3-dihydroxy-2,3-dih 63.4 71 0.0015 25.9 8.9 70 69-141 6-77 (263)
278 cd05188 MDR Medium chain reduc 63.3 74 0.0016 25.4 9.0 54 64-121 130-183 (271)
279 TIGR02853 spore_dpaA dipicolin 63.3 92 0.002 26.3 9.8 84 29-118 110-196 (287)
280 cd08258 Zn_ADH4 Alcohol dehydr 63.2 89 0.0019 26.1 9.9 54 63-118 159-212 (306)
281 cd08238 sorbose_phosphate_red 63.1 1E+02 0.0022 27.2 10.4 59 63-123 170-238 (410)
282 PRK07677 short chain dehydroge 63.1 70 0.0015 25.7 8.8 71 70-140 2-74 (252)
283 PRK10538 malonic semialdehyde 62.9 76 0.0017 25.5 9.0 66 72-140 3-70 (248)
284 TIGR03206 benzo_BadH 2-hydroxy 62.8 69 0.0015 25.5 8.6 55 70-124 4-59 (250)
285 COG0159 TrpA Tryptophan syntha 62.7 85 0.0018 26.4 9.0 68 51-123 109-178 (265)
286 PRK10754 quinone oxidoreductas 62.7 91 0.002 26.1 11.4 55 63-120 135-189 (327)
287 COG0399 WecE Predicted pyridox 62.6 73 0.0016 28.2 9.1 95 71-166 50-146 (374)
288 PLN02702 L-idonate 5-dehydroge 62.6 62 0.0013 27.8 8.8 57 62-121 175-231 (364)
289 TIGR02415 23BDH acetoin reduct 62.5 68 0.0015 25.7 8.6 54 71-124 2-56 (254)
290 PRK08265 short chain dehydroge 62.4 84 0.0018 25.5 9.2 69 70-141 7-77 (261)
291 PRK06113 7-alpha-hydroxysteroi 62.2 75 0.0016 25.6 8.8 71 70-140 12-84 (255)
292 PRK06949 short chain dehydroge 62.2 64 0.0014 25.9 8.4 34 69-102 9-42 (258)
293 PRK12744 short chain dehydroge 62.1 72 0.0016 25.7 8.7 71 70-140 9-85 (257)
294 PRK09134 short chain dehydroge 62.0 83 0.0018 25.4 9.9 54 70-123 10-65 (258)
295 PRK07067 sorbitol dehydrogenas 62.0 79 0.0017 25.5 8.9 32 70-101 7-38 (257)
296 PRK12831 putative oxidoreducta 62.0 47 0.001 30.1 8.1 50 72-121 283-337 (464)
297 PRK13243 glyoxylate reductase; 61.8 87 0.0019 27.1 9.4 103 72-198 152-256 (333)
298 PRK11891 aspartate carbamoyltr 61.8 52 0.0011 29.7 8.2 54 69-123 241-300 (429)
299 PRK15438 erythronate-4-phospha 61.8 63 0.0014 28.7 8.6 129 45-198 88-223 (378)
300 TIGR03538 DapC_gpp succinyldia 61.6 1.1E+02 0.0024 26.7 13.2 84 73-156 93-179 (393)
301 PRK08213 gluconate 5-dehydroge 61.5 80 0.0017 25.5 8.9 55 70-124 13-68 (259)
302 PRK07889 enoyl-(acyl carrier p 61.5 87 0.0019 25.4 10.3 31 70-100 8-40 (256)
303 cd08267 MDR1 Medium chain dehy 61.2 80 0.0017 26.0 9.0 52 64-119 139-190 (319)
304 PRK08306 dipicolinate synthase 61.0 93 0.002 26.4 9.4 49 68-120 151-199 (296)
305 PRK05786 fabG 3-ketoacyl-(acyl 60.9 81 0.0018 24.9 9.4 33 70-102 6-38 (238)
306 PRK06077 fabG 3-ketoacyl-(acyl 60.7 71 0.0015 25.5 8.4 54 70-123 7-62 (252)
307 cd08243 quinone_oxidoreductase 60.5 95 0.0021 25.6 10.8 55 64-121 138-192 (320)
308 cd05279 Zn_ADH1 Liver alcohol 60.4 1E+02 0.0022 26.5 9.8 54 62-118 177-230 (365)
309 cd08282 PFDH_like Pseudomonas 60.4 80 0.0017 27.4 9.1 55 62-119 170-224 (375)
310 PRK04870 histidinol-phosphate 60.4 75 0.0016 27.2 8.9 82 73-155 84-166 (356)
311 PRK05872 short chain dehydroge 60.2 83 0.0018 26.3 8.9 69 69-141 9-82 (296)
312 COG0623 FabI Enoyl-[acyl-carri 60.1 59 0.0013 27.0 7.4 68 110-184 26-93 (259)
313 PRK05855 short chain dehydroge 60.0 1.2E+02 0.0025 27.7 10.5 53 70-122 316-369 (582)
314 PF01262 AlaDh_PNT_C: Alanine 59.9 47 0.001 25.4 6.8 49 72-123 22-70 (168)
315 PRK11658 UDP-4-amino-4-deoxy-L 59.9 1E+02 0.0022 26.9 9.7 52 73-124 51-102 (379)
316 cd05211 NAD_bind_Glu_Leu_Phe_V 59.8 61 0.0013 26.2 7.7 52 51-102 4-55 (217)
317 PLN02342 ornithine carbamoyltr 59.8 57 0.0012 28.6 7.9 60 62-122 188-250 (348)
318 TIGR03325 BphB_TodD cis-2,3-di 59.7 93 0.002 25.2 9.4 69 70-141 6-76 (262)
319 cd08240 6_hydroxyhexanoate_dh_ 59.7 1.1E+02 0.0024 26.0 10.4 52 66-120 173-224 (350)
320 cd05281 TDH Threonine dehydrog 59.6 78 0.0017 26.8 8.8 51 67-120 162-212 (341)
321 PRK06128 oxidoreductase; Provi 59.5 1E+02 0.0022 25.7 10.2 72 70-141 56-131 (300)
322 cd05313 NAD_bind_2_Glu_DH NAD( 59.4 63 0.0014 27.0 7.8 52 50-101 18-69 (254)
323 TIGR02817 adh_fam_1 zinc-bindi 59.4 73 0.0016 26.7 8.6 50 69-121 149-199 (336)
324 PRK08068 transaminase; Reviewe 59.4 1.2E+02 0.0026 26.4 11.7 82 73-155 97-180 (389)
325 PLN02178 cinnamyl-alcohol dehy 59.4 47 0.001 29.1 7.5 51 67-120 177-227 (375)
326 PRK07904 short chain dehydroge 59.0 97 0.0021 25.2 10.1 70 69-139 8-83 (253)
327 PRK14807 histidinol-phosphate 58.9 79 0.0017 27.1 8.8 82 73-155 79-161 (351)
328 PRK08177 short chain dehydroge 58.9 88 0.0019 24.7 9.4 65 71-138 3-67 (225)
329 cd08290 ETR 2-enoyl thioester 58.8 91 0.002 26.3 9.1 58 64-121 142-200 (341)
330 cd08259 Zn_ADH5 Alcohol dehydr 58.5 1.1E+02 0.0023 25.5 9.5 52 64-118 158-209 (332)
331 PRK10490 sensor protein KdpD; 58.5 2E+02 0.0043 28.6 12.6 108 70-184 251-375 (895)
332 cd08298 CAD2 Cinnamyl alcohol 58.4 85 0.0018 26.3 8.8 54 62-119 161-214 (329)
333 PRK12745 3-ketoacyl-(acyl-carr 58.3 95 0.0021 24.8 9.4 72 70-141 3-77 (256)
334 PLN02586 probable cinnamyl alc 58.1 82 0.0018 27.2 8.8 54 64-120 179-232 (360)
335 PRK07326 short chain dehydroge 58.0 92 0.002 24.6 9.2 32 70-101 7-38 (237)
336 PRK08936 glucose-1-dehydrogena 57.9 99 0.0022 25.0 9.7 72 70-141 8-82 (261)
337 PRK00779 ornithine carbamoyltr 57.9 70 0.0015 27.4 8.1 61 62-123 146-209 (304)
338 TIGR03537 DapC succinyldiamino 57.9 1.2E+02 0.0026 25.9 11.4 110 44-156 35-150 (350)
339 PRK05166 histidinol-phosphate 57.8 75 0.0016 27.5 8.5 82 73-155 91-172 (371)
340 cd08245 CAD Cinnamyl alcohol d 57.8 1.1E+02 0.0023 25.7 9.3 54 64-121 158-211 (330)
341 PRK08912 hypothetical protein; 57.7 1.3E+02 0.0028 26.2 13.2 52 72-124 89-140 (387)
342 PRK01688 histidinol-phosphate 57.7 1.2E+02 0.0027 26.0 9.9 80 73-154 77-157 (351)
343 COG4408 Uncharacterized protei 57.6 1.2E+02 0.0026 26.6 9.2 127 73-213 7-150 (431)
344 PF13460 NAD_binding_10: NADH( 57.6 28 0.00061 26.5 5.2 32 73-104 2-33 (183)
345 PRK08594 enoyl-(acyl carrier p 57.4 1E+02 0.0023 25.0 10.0 72 70-142 8-85 (257)
346 PRK08192 aspartate carbamoyltr 57.4 70 0.0015 27.9 8.1 54 69-123 159-218 (338)
347 PRK07324 transaminase; Validat 57.3 77 0.0017 27.5 8.5 82 73-155 83-166 (373)
348 TIGR01963 PHB_DH 3-hydroxybuty 57.3 89 0.0019 24.9 8.4 55 70-124 2-57 (255)
349 PF00091 Tubulin: Tubulin/FtsZ 57.3 39 0.00085 27.1 6.2 57 152-208 90-161 (216)
350 PRK08415 enoyl-(acyl carrier p 57.1 1.1E+02 0.0024 25.3 9.4 72 70-142 6-81 (274)
351 PRK07775 short chain dehydroge 57.0 1.1E+02 0.0023 25.1 9.1 55 70-124 11-66 (274)
352 TIGR01318 gltD_gamma_fam gluta 56.9 57 0.0012 29.6 7.8 51 71-121 142-210 (467)
353 cd05280 MDR_yhdh_yhfp Yhdh and 56.9 1.1E+02 0.0024 25.3 9.4 48 70-120 148-195 (325)
354 PRK07069 short chain dehydroge 56.9 99 0.0021 24.6 9.8 31 72-102 2-32 (251)
355 cd05278 FDH_like Formaldehyde 56.8 99 0.0022 26.1 9.0 54 63-119 162-215 (347)
356 TIGR03590 PseG pseudaminic aci 56.8 1.2E+02 0.0025 25.4 9.8 82 35-125 2-89 (279)
357 cd08260 Zn_ADH6 Alcohol dehydr 56.7 1.2E+02 0.0026 25.6 10.0 52 63-118 160-211 (345)
358 PRK06836 aspartate aminotransf 56.7 1.4E+02 0.0029 26.2 11.1 82 73-155 99-181 (394)
359 cd08279 Zn_ADH_class_III Class 56.7 1.3E+02 0.0028 25.9 10.3 53 63-118 177-229 (363)
360 cd08249 enoyl_reductase_like e 56.5 78 0.0017 26.9 8.3 49 67-119 153-201 (339)
361 PRK12810 gltD glutamate syntha 56.5 66 0.0014 29.1 8.1 50 72-121 145-212 (471)
362 PLN02623 pyruvate kinase 56.5 1.8E+02 0.0039 27.5 11.6 122 83-212 366-509 (581)
363 PRK08264 short chain dehydroge 56.4 69 0.0015 25.4 7.6 32 70-101 7-39 (238)
364 PLN02527 aspartate carbamoyltr 56.3 1.2E+02 0.0026 26.0 9.2 45 79-123 163-210 (306)
365 cd08235 iditol_2_DH_like L-idi 56.2 1.2E+02 0.0027 25.5 10.3 54 64-120 161-214 (343)
366 cd06320 PBP1_allose_binding Pe 55.9 1.1E+02 0.0023 24.7 18.1 45 164-211 172-218 (275)
367 cd05286 QOR2 Quinone oxidoredu 55.9 1.1E+02 0.0024 24.9 10.9 56 63-121 131-186 (320)
368 cd08264 Zn_ADH_like2 Alcohol d 55.9 94 0.002 26.0 8.6 36 64-99 158-193 (325)
369 PRK05717 oxidoreductase; Valid 55.9 1E+02 0.0022 24.8 8.6 71 69-141 10-81 (255)
370 PF13478 XdhC_C: XdhC Rossmann 55.7 19 0.00042 26.9 3.8 31 73-103 1-31 (136)
371 cd05285 sorbitol_DH Sorbitol d 55.6 1.3E+02 0.0028 25.5 9.7 57 62-121 156-212 (343)
372 PRK13984 putative oxidoreducta 55.6 1E+02 0.0022 28.9 9.4 52 69-121 283-352 (604)
373 PLN02918 pyridoxine (pyridoxam 55.6 1.3E+02 0.0028 28.2 9.7 50 70-119 136-192 (544)
374 cd08231 MDR_TM0436_like Hypoth 55.5 1.3E+02 0.0029 25.6 12.8 55 64-121 173-227 (361)
375 PRK07985 oxidoreductase; Provi 55.4 1.2E+02 0.0026 25.3 9.1 72 70-141 50-125 (294)
376 PRK09072 short chain dehydroge 55.4 1E+02 0.0022 24.9 8.6 33 70-102 6-38 (263)
377 PRK07366 succinyldiaminopimela 55.3 1.4E+02 0.003 25.9 11.9 83 73-156 95-179 (388)
378 PF02558 ApbA: Ketopantoate re 55.3 76 0.0016 23.4 7.2 47 73-123 1-47 (151)
379 PRK06482 short chain dehydroge 55.2 93 0.002 25.4 8.3 33 70-102 3-35 (276)
380 PF00448 SRP54: SRP54-type pro 55.2 61 0.0013 25.7 6.9 79 43-125 8-92 (196)
381 TIGR00658 orni_carb_tr ornithi 55.2 88 0.0019 26.7 8.2 60 63-123 143-208 (304)
382 cd00288 Pyruvate_Kinase Pyruva 55.1 1.1E+02 0.0023 28.2 9.2 49 48-102 359-407 (480)
383 PF00702 Hydrolase: haloacid d 55.1 79 0.0017 24.4 7.6 72 52-132 131-209 (215)
384 cd06274 PBP1_FruR Ligand bindi 54.8 1.1E+02 0.0024 24.5 18.0 47 164-212 167-217 (264)
385 PRK15407 lipopolysaccharide bi 54.8 1.5E+02 0.0033 26.7 10.1 53 73-125 81-141 (438)
386 cd08284 FDH_like_2 Glutathione 54.8 1.3E+02 0.0028 25.3 11.6 52 65-119 164-215 (344)
387 PRK06953 short chain dehydroge 54.7 1E+02 0.0022 24.2 9.8 52 71-125 3-54 (222)
388 PRK12769 putative oxidoreducta 54.3 29 0.00062 33.0 5.6 51 71-121 328-396 (654)
389 cd08262 Zn_ADH8 Alcohol dehydr 54.1 1.3E+02 0.0029 25.3 9.8 55 62-119 155-209 (341)
390 TIGR02379 ECA_wecE TDP-4-keto- 54.0 66 0.0014 28.2 7.5 54 72-125 48-101 (376)
391 KOG1176 Acyl-CoA synthetase [L 54.0 1.2E+02 0.0026 28.3 9.4 60 66-125 69-128 (537)
392 CHL00194 ycf39 Ycf39; Provisio 53.9 67 0.0014 27.1 7.4 31 72-102 3-33 (317)
393 PRK12775 putative trifunctiona 53.9 1.4E+02 0.0031 30.0 10.6 31 72-102 432-462 (1006)
394 PRK07576 short chain dehydroge 53.9 1.2E+02 0.0026 24.7 8.8 54 70-123 10-64 (264)
395 cd08269 Zn_ADH9 Alcohol dehydr 53.8 1.2E+02 0.0027 24.9 11.3 55 63-120 124-178 (312)
396 PRK14805 ornithine carbamoyltr 53.8 72 0.0016 27.3 7.4 60 63-123 142-207 (302)
397 cd08248 RTN4I1 Human Reticulon 53.7 1E+02 0.0022 26.1 8.5 46 69-118 163-208 (350)
398 PRK06202 hypothetical protein; 53.7 21 0.00045 28.9 4.0 37 176-212 62-98 (232)
399 cd05284 arabinose_DH_like D-ar 53.4 1.1E+02 0.0024 25.7 8.7 52 65-120 164-216 (340)
400 cd08270 MDR4 Medium chain dehy 53.3 78 0.0017 26.1 7.6 49 68-119 132-180 (305)
401 PRK06180 short chain dehydroge 53.3 1.2E+02 0.0025 24.9 8.6 32 70-101 5-36 (277)
402 PRK09291 short chain dehydroge 53.3 69 0.0015 25.7 7.1 33 70-102 3-35 (257)
403 PRK12747 short chain dehydroge 53.2 1.1E+02 0.0023 24.6 8.3 55 69-123 4-60 (252)
404 TIGR02824 quinone_pig3 putativ 53.2 1.3E+02 0.0027 24.7 11.1 56 62-120 133-188 (325)
405 PRK05565 fabG 3-ketoacyl-(acyl 53.0 1.1E+02 0.0024 24.1 8.9 55 70-124 6-62 (247)
406 PRK06500 short chain dehydroge 52.8 1.2E+02 0.0025 24.2 9.5 69 70-141 7-77 (249)
407 TIGR00936 ahcY adenosylhomocys 52.7 68 0.0015 28.7 7.4 50 66-119 192-241 (406)
408 PF01494 FAD_binding_3: FAD bi 52.6 24 0.00053 29.6 4.5 31 72-102 3-33 (356)
409 PRK14031 glutamate dehydrogena 52.6 80 0.0017 28.7 7.8 52 50-101 208-259 (444)
410 PRK05957 aspartate aminotransf 52.5 98 0.0021 27.0 8.4 83 72-155 91-173 (389)
411 PLN02253 xanthoxin dehydrogena 52.4 1.1E+02 0.0024 25.0 8.4 32 70-101 19-50 (280)
412 COG1167 ARO8 Transcriptional r 52.1 1.5E+02 0.0033 26.8 9.7 83 73-157 158-242 (459)
413 cd05288 PGDH Prostaglandin deh 52.1 1.4E+02 0.003 24.9 11.0 53 64-119 141-194 (329)
414 PRK02255 putrescine carbamoylt 51.9 1E+02 0.0022 26.9 8.2 54 69-122 154-213 (338)
415 PRK13376 pyrB bifunctional asp 51.9 1.5E+02 0.0033 27.6 9.6 54 69-123 174-233 (525)
416 PRK08339 short chain dehydroge 51.8 1.2E+02 0.0026 24.7 8.5 33 69-101 8-40 (263)
417 PF06039 Mqo: Malate:quinone o 51.8 16 0.00034 33.3 3.2 42 176-217 233-296 (488)
418 PRK15408 autoinducer 2-binding 51.6 1.6E+02 0.0034 25.4 15.8 72 49-125 38-114 (336)
419 PLN02514 cinnamyl-alcohol dehy 51.6 1.3E+02 0.0029 25.8 9.0 54 64-120 176-229 (357)
420 PTZ00433 tyrosine aminotransfe 51.4 1.1E+02 0.0024 27.0 8.6 83 73-156 107-191 (412)
421 PRK11749 dihydropyrimidine deh 51.4 91 0.002 28.0 8.2 52 69-121 273-330 (457)
422 PRK05447 1-deoxy-D-xylulose 5- 51.2 1.8E+02 0.0039 25.9 12.7 110 71-198 3-114 (385)
423 PRK05479 ketol-acid reductoiso 51.1 1.7E+02 0.0036 25.5 11.2 44 73-118 20-63 (330)
424 TIGR02823 oxido_YhdH putative 51.0 1.4E+02 0.0031 24.7 9.5 51 66-119 142-193 (323)
425 cd05283 CAD1 Cinnamyl alcohol 50.9 82 0.0018 26.7 7.5 52 66-121 167-218 (337)
426 PF13377 Peripla_BP_3: Peripla 50.9 96 0.0021 22.7 8.2 34 175-210 68-105 (160)
427 PRK06924 short chain dehydroge 50.7 1.2E+02 0.0026 24.2 8.2 31 71-101 3-33 (251)
428 PRK06702 O-acetylhomoserine am 50.6 1.9E+02 0.0042 26.1 11.6 78 73-155 79-160 (432)
429 PLN03026 histidinol-phosphate 50.6 1.2E+02 0.0026 26.4 8.6 82 73-155 106-188 (380)
430 cd06287 PBP1_LacI_like_8 Ligan 50.5 1.4E+02 0.003 24.4 15.5 45 164-211 168-217 (269)
431 PRK08945 putative oxoacyl-(acy 50.5 1.3E+02 0.0028 24.0 9.1 33 69-101 12-44 (247)
432 PRK07074 short chain dehydroge 50.3 1.3E+02 0.0028 24.1 8.6 32 70-101 3-34 (257)
433 cd08261 Zn_ADH7 Alcohol dehydr 50.3 1.5E+02 0.0033 24.9 11.0 53 62-118 153-205 (337)
434 COG0285 FolC Folylpolyglutamat 50.3 93 0.002 28.1 7.8 113 61-188 35-150 (427)
435 PRK09242 tropinone reductase; 50.2 1.3E+02 0.0029 24.1 9.0 72 70-141 10-85 (257)
436 PLN02583 cinnamoyl-CoA reducta 50.2 1E+02 0.0022 25.8 7.8 33 70-102 7-39 (297)
437 PRK09257 aromatic amino acid a 50.2 1.7E+02 0.0038 25.5 11.0 79 44-124 68-149 (396)
438 PRK09730 putative NAD(P)-bindi 50.0 1.3E+02 0.0028 23.8 8.7 54 71-124 3-58 (247)
439 KOG0634 Aromatic amino acid am 49.9 1.2E+02 0.0026 27.5 8.3 52 73-125 126-178 (472)
440 PRK06436 glycerate dehydrogena 49.9 1.1E+02 0.0024 26.2 8.0 100 72-198 124-225 (303)
441 cd08253 zeta_crystallin Zeta-c 49.8 1.4E+02 0.0031 24.4 10.8 54 64-120 140-193 (325)
442 PRK06603 enoyl-(acyl carrier p 49.7 1.4E+02 0.0031 24.3 9.3 72 70-142 9-84 (260)
443 COG0118 HisH Glutamine amidotr 49.7 73 0.0016 25.7 6.3 57 71-137 4-60 (204)
444 PRK14804 ornithine carbamoyltr 49.7 94 0.002 26.7 7.6 38 68-105 152-189 (311)
445 COG1587 HemD Uroporphyrinogen- 49.6 1.4E+02 0.0031 24.3 9.9 121 82-211 86-213 (248)
446 COG0169 AroE Shikimate 5-dehyd 49.6 91 0.002 26.5 7.3 72 28-102 84-158 (283)
447 cd08263 Zn_ADH10 Alcohol dehyd 49.6 1.6E+02 0.0034 25.3 9.2 52 64-118 183-234 (367)
448 PRK06198 short chain dehydroge 49.5 1.4E+02 0.0029 24.0 9.5 54 70-123 7-62 (260)
449 cd01011 nicotinamidase Nicotin 49.4 1.3E+02 0.0028 23.7 8.5 62 55-120 128-196 (196)
450 PRK09422 ethanol-active dehydr 49.4 1.6E+02 0.0034 24.7 10.1 56 62-121 156-212 (338)
451 PRK08690 enoyl-(acyl carrier p 49.4 1.4E+02 0.0031 24.2 9.2 71 70-141 7-81 (261)
452 PRK13111 trpA tryptophan synth 49.4 1.3E+02 0.0029 25.1 8.2 53 73-125 92-152 (258)
453 COG2085 Predicted dinucleotide 49.2 1.4E+02 0.0031 24.2 10.3 77 72-150 3-92 (211)
454 PRK13581 D-3-phosphoglycerate 49.2 1.4E+02 0.003 27.7 9.1 103 72-198 142-246 (526)
455 cd08286 FDH_like_ADH2 formalde 49.1 1.3E+02 0.0028 25.4 8.5 52 64-119 162-214 (345)
456 cd08185 Fe-ADH1 Iron-containin 48.9 1.2E+02 0.0026 26.7 8.3 20 167-189 77-96 (380)
457 PRK02731 histidinol-phosphate 48.9 1.2E+02 0.0025 26.1 8.3 81 73-155 87-167 (367)
458 TIGR01831 fabG_rel 3-oxoacyl-( 48.9 1.2E+02 0.0026 23.9 7.9 69 73-141 2-73 (239)
459 PRK05839 hypothetical protein; 48.8 1.8E+02 0.0039 25.2 11.1 78 44-124 59-138 (374)
460 PRK06057 short chain dehydroge 48.7 1.4E+02 0.003 24.0 10.2 67 69-139 7-74 (255)
461 COG2247 LytB Putative cell wal 48.7 1.6E+02 0.0034 25.6 8.5 71 73-143 55-127 (337)
462 cd08234 threonine_DH_like L-th 48.5 1.6E+02 0.0035 24.6 10.0 54 62-118 153-206 (334)
463 PRK12814 putative NADPH-depend 48.3 1.4E+02 0.0031 28.3 9.3 55 66-121 320-380 (652)
464 PRK07825 short chain dehydroge 48.2 1.5E+02 0.0032 24.1 10.0 68 70-141 6-75 (273)
465 PRK15454 ethanol dehydrogenase 48.1 96 0.0021 27.5 7.6 22 165-189 98-119 (395)
466 PRK12742 oxidoreductase; Provi 48.1 1.4E+02 0.0029 23.6 9.3 53 70-124 7-60 (237)
467 TIGR01264 tyr_amTase_E tyrosin 48.0 1.7E+02 0.0036 25.6 9.2 82 73-155 98-181 (401)
468 PRK09853 putative selenate red 48.0 86 0.0019 31.7 7.8 50 72-121 541-608 (1019)
469 cd08283 FDH_like_1 Glutathione 47.9 1.4E+02 0.0029 26.1 8.6 56 62-120 178-234 (386)
470 PRK12778 putative bifunctional 47.9 87 0.0019 30.3 7.9 52 69-121 570-627 (752)
471 TIGR03801 asp_4_decarbox aspar 47.8 2.3E+02 0.0051 26.3 11.3 84 72-155 157-253 (521)
472 PRK01438 murD UDP-N-acetylmura 47.8 1.2E+02 0.0025 27.4 8.3 50 72-121 18-69 (480)
473 KOG1198 Zinc-binding oxidoredu 47.7 58 0.0013 28.5 6.0 54 65-121 154-207 (347)
474 PRK08013 oxidoreductase; Provi 47.6 59 0.0013 28.5 6.2 29 73-101 6-34 (400)
475 cd08272 MDR6 Medium chain dehy 47.6 1.6E+02 0.0034 24.2 9.7 56 62-121 138-193 (326)
476 cd06285 PBP1_LacI_like_7 Ligan 47.6 1.5E+02 0.0031 23.8 18.9 46 164-212 165-214 (265)
477 PRK00257 erythronate-4-phospha 47.3 68 0.0015 28.5 6.5 57 45-102 88-148 (381)
478 PF12000 Glyco_trans_4_3: Gkyc 47.2 28 0.00061 27.2 3.6 44 160-209 52-95 (171)
479 PRK12749 quinate/shikimate deh 47.2 1.8E+02 0.0038 24.7 8.8 32 72-103 126-157 (288)
480 PRK04148 hypothetical protein; 47.0 1.2E+02 0.0026 22.7 6.9 48 72-123 19-66 (134)
481 cd08265 Zn_ADH3 Alcohol dehydr 47.0 1.1E+02 0.0024 26.6 7.8 55 64-121 199-253 (384)
482 PRK10624 L-1,2-propanediol oxi 46.8 1.1E+02 0.0023 27.0 7.7 22 165-189 79-100 (382)
483 PRK15395 methyl-galactoside AB 46.8 48 0.001 28.2 5.4 46 164-211 213-260 (330)
484 PRK09414 glutamate dehydrogena 46.8 1.1E+02 0.0023 27.9 7.7 52 50-101 212-263 (445)
485 TIGR03540 DapC_direct LL-diami 46.8 1.9E+02 0.0042 25.0 12.0 82 73-155 94-177 (383)
486 PRK09545 znuA high-affinity zi 46.7 1.3E+02 0.0029 25.6 8.1 85 84-172 212-306 (311)
487 cd08241 QOR1 Quinone oxidoredu 46.5 1.6E+02 0.0035 24.0 10.2 55 63-120 134-188 (323)
488 cd00288 Pyruvate_Kinase Pyruva 46.5 2.4E+02 0.0052 26.0 12.2 123 83-212 262-408 (480)
489 PRK06123 short chain dehydroge 46.3 1.4E+02 0.003 23.7 7.9 54 70-123 3-58 (248)
490 TIGR02637 RhaS rhamnose ABC tr 46.2 1.7E+02 0.0037 24.2 8.8 43 164-209 175-219 (302)
491 PRK09526 lacI lac repressor; R 46.1 1.3E+02 0.0028 25.3 8.0 37 174-212 239-279 (342)
492 PRK05476 S-adenosyl-L-homocyst 46.1 1.5E+02 0.0033 26.7 8.6 31 68-99 211-241 (425)
493 PRK06179 short chain dehydroge 46.1 1.5E+02 0.0033 23.9 8.2 65 70-140 5-69 (270)
494 cd08254 hydroxyacyl_CoA_DH 6-h 46.1 1.7E+02 0.0038 24.3 10.1 56 63-122 160-215 (338)
495 PRK09275 aspartate aminotransf 46.0 2.5E+02 0.0055 26.1 11.2 113 44-156 133-255 (527)
496 PRK07178 pyruvate carboxylase 45.9 1.5E+02 0.0033 26.9 8.8 30 72-101 4-33 (472)
497 cd06316 PBP1_ABC_sugar_binding 45.9 50 0.0011 27.2 5.3 44 164-210 176-220 (294)
498 PRK08159 enoyl-(acyl carrier p 45.7 1.7E+02 0.0037 24.1 8.7 68 110-184 30-97 (272)
499 COG1064 AdhP Zn-dependent alco 45.7 2.1E+02 0.0045 25.1 9.3 81 108-210 182-262 (339)
500 COG2390 DeoR Transcriptional r 45.5 2E+02 0.0044 24.9 10.3 20 180-199 117-136 (321)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-56 Score=369.18 Aligned_cols=210 Identities=53% Similarity=0.894 Sum_probs=199.6
Q ss_pred hHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 043209 9 ANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACF 88 (221)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~ 88 (221)
++.+.+.+++|||++++++....+++||+|+|++||+||.|||.|++|+.+|+++|.+.||.+ ||++||||+|.+||++
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~v 80 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMV 80 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHH
Confidence 456788899999999999988888999999999999999999999999999999999999974 9999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHhhCCC-eeecCCCCCCccHHHHHhhHHH
Q 043209 89 AAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMG-IDEEFRIVEELLNKIPT-SFNPHQFKNPANPKTHYETTGP 166 (221)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~ 166 (221)
|+.+|+++++|||++.+.++++.|+++||+|+.++...+ +..+.+++++++++.|+ .+|++||+||+|+++||.++++
T Consensus 81 aa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~ 160 (300)
T COG0031 81 AAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGP 160 (300)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHH
Confidence 999999999999999999999999999999999998444 78899999999999988 7888899999999999999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCC
Q 043209 167 EIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGG 219 (221)
Q Consensus 167 Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~ 219 (221)
||++|+++.+|++|+++|||||++|++++||+.+|++|+++|||++|+.+++|
T Consensus 161 EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G 213 (300)
T COG0031 161 EIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGG 213 (300)
T ss_pred HHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCC
Confidence 99999988899999999999999999999999999999999999999999866
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=5.3e-55 Score=382.33 Aligned_cols=214 Identities=62% Similarity=1.094 Sum_probs=201.2
Q ss_pred chhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 043209 7 AIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMA 86 (221)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA 86 (221)
++++++.+.+++|||++++.+++..+++||+|+|++|||||||||+|.+++..+++.|.+.+|..+||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 36788999999999999999988778899999999999999999999999999999999889866799999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHH
Q 043209 87 CFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGP 166 (221)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (221)
++|+.+|++++||||+.++..|++.++.+||+|+.+++..+++++++.+++++++.++++|++||+|+.++++||.|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655678899999998887689999999999999889999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCCC
Q 043209 167 EIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGK 220 (221)
Q Consensus 167 Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~~ 220 (221)
||++|+++++|+||+|+||||+++|++++||+.+|++|||||||++|+.+.+|.
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~ 325 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGK 325 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCC
Confidence 999999778999999999999999999999999999999999999999886654
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.1e-54 Score=372.34 Aligned_cols=214 Identities=71% Similarity=1.153 Sum_probs=198.3
Q ss_pred chhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 043209 7 AIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMA 86 (221)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA 86 (221)
..++.++..+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.+.|.+.+|.+.||++|+||||.|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 45677899999999999988776667899999999999999999999999999999998888867799999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHH
Q 043209 87 CFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGP 166 (221)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (221)
++|+.+|++|+||||++++..|++.++.+||+|+.+++..+++++.+.+++++++.++.+|++||+|+.|+.+||.|+|+
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987645678889999998876678999999999998889999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCCC
Q 043209 167 EIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGK 220 (221)
Q Consensus 167 Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~~ 220 (221)
||++|+++++|+||+|+|+||+++|++.+||+.+|++|||+|||++|+++.+|.
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~ 217 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGK 217 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCC
Confidence 999999767999999999999999999999999999999999999999987654
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.4e-53 Score=366.14 Aligned_cols=219 Identities=68% Similarity=1.124 Sum_probs=202.4
Q ss_pred CccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChH
Q 043209 2 GSEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNT 81 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~ 81 (221)
|++.+..++.+...+++|||+++++++...|.+||+|+|++|||||||||++++++..++++|.+.|+.++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 67888899999999999999999998876678999999999999999999999999999999998888667999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHH
Q 043209 82 GIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHY 161 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 161 (221)
|+|+|++|+.+|++|+||||..++..|++.++.+||+|+.++.+.+.+++++.+++++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999876444567788888888766789999999999988799
Q ss_pred hhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCCC
Q 043209 162 ETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGK 220 (221)
Q Consensus 162 ~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~~ 220 (221)
.++++||++|+.+++|+||+|+|+|||++|++.+||+.+|++|||||||++++++.++.
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~ 219 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQ 219 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCC
Confidence 99999999999668999999999999999999999999999999999999999887653
No 5
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1e-53 Score=371.47 Aligned_cols=214 Identities=61% Similarity=1.009 Sum_probs=199.9
Q ss_pred chhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 043209 7 AIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMA 86 (221)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA 86 (221)
++.+++...+++|||+++++++...|++||+|+|++||+||||||++++++.+++++|.+.||.++||++|+||||+|+|
T Consensus 48 ~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA 127 (368)
T PLN02556 48 KIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLA 127 (368)
T ss_pred hhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHH
Confidence 35678899999999999999988788999999999999999999999999999999999999987899999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHH
Q 043209 87 CFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGP 166 (221)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (221)
++|+.+|++|+||||+.++..|++.++.+||+|+.+++..++..+++.+++++++.++++|++||+|+.++++||.++++
T Consensus 128 ~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~ 207 (368)
T PLN02556 128 FMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP 207 (368)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986544567888898888887789999999999999789999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCCC
Q 043209 167 EIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGK 220 (221)
Q Consensus 167 Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~~ 220 (221)
||++|+.+.+|+||+|+|||||++|++.+||+.+|++|||||||++++.+.+|.
T Consensus 208 EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~ 261 (368)
T PLN02556 208 EIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGK 261 (368)
T ss_pred HHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCC
Confidence 999998668999999999999999999999999999999999999998887664
No 6
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.6e-53 Score=361.59 Aligned_cols=209 Identities=45% Similarity=0.733 Sum_probs=194.4
Q ss_pred hhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 043209 8 IANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMAC 87 (221)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~ 87 (221)
+++++...+++|||+++++|+...|++||+|+|++|||||||||++.+++.+++++|.+.++. +||++|+||||.|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHH
Confidence 467788899999999999998888899999999999999999999999999999999877774 4999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHH
Q 043209 88 FAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPE 167 (221)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 167 (221)
+|+.+|++|+||||+..+..|++.++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999997545888888999998886 789999999999988789999999
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 168 IWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 168 i~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
|++|+++.+|+||+|+|+||+++|++.+||+.+|++|||||||++++++.|
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g 210 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG 210 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC
Confidence 999997679999999999999999999999999999999999999888753
No 7
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.8e-52 Score=353.19 Aligned_cols=205 Identities=46% Similarity=0.753 Sum_probs=190.2
Q ss_pred hhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 043209 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAA 91 (221)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~ 91 (221)
+...+++|||++++++++..|.+||+|+|++|||||||||++.+++..++++|.+.++. +||++|+||||.|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHH
Confidence 45678999999999999888899999999999999999999999999999999877775 49999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHh
Q 043209 92 KGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEG 171 (221)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (221)
+|++|+||+|++.+..|++.++.+||+|+.++.+.+++++.+.+++++++. +.+|++||+|+.++.+||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987545788889999998887 4568999999999987899999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 172 TRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 172 ~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
+++++|+||+|+||||+++|++.+||+.+|++|||+|||++++.+.+
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g 206 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG 206 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC
Confidence 97689999999999999999999999999999999999999887754
No 8
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=7.6e-52 Score=352.21 Aligned_cols=206 Identities=60% Similarity=0.974 Sum_probs=191.4
Q ss_pred hcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHc
Q 043209 13 TELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAK 92 (221)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~ 92 (221)
...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..++++|.+.++. +|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHc
Confidence 4568999999999999888899999999999999999999999999999999777764 499999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhh
Q 043209 93 GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGT 172 (221)
Q Consensus 93 g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~ 172 (221)
|++|+||||++.+..|++.++.+||+|+.++.+.+++++.+.+++++++.++++++++|+|+.++..||.++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987645788999999998886568899999999987679999999999999
Q ss_pred CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCC
Q 043209 173 RGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGG 219 (221)
Q Consensus 173 ~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~ 219 (221)
+++||+||+|+|+||+++|++.+|++.+|.+|||+|||++++++.++
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~ 207 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGG 207 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCC
Confidence 76799999999999999999999999999999999999999998764
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=355.07 Aligned_cols=208 Identities=28% Similarity=0.351 Sum_probs=193.5
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
.+..++.++...+.+|||.+++.|++.+|++||+|+|++||+||||.|+|++.+..+.+++.. +..||++|+|||++
T Consensus 11 ~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQ 87 (347)
T COG1171 11 DILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQ 87 (347)
T ss_pred HHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHH
Confidence 455678899999999999999999999999999999999999999999999999987534221 44599999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhh
Q 043209 84 GMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYET 163 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (221)
++|++|+++|++++||||.+++..|++..+.+|++|++++.+ |+++.+.++++++++ |+.|+++||+|+.+. ||+|
T Consensus 88 GvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~--~dda~~~a~~~a~~~-G~~~i~pfD~p~viA-GQGT 163 (347)
T COG1171 88 GVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEEE-GLTFVPPFDDPDVIA-GQGT 163 (347)
T ss_pred HHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEEeCCCCCcceee-cccH
Confidence 999999999999999999999999999999999999999997 999999999999998 999999999999995 9999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
++.||++|++..+|+||||+|+||+++|++.++|...|++|||||||+++++|..
T Consensus 164 i~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~ 218 (347)
T COG1171 164 IALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYA 218 (347)
T ss_pred HHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHH
Confidence 9999999996557999999999999999999999999999999999999998753
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=3.1e-51 Score=348.35 Aligned_cols=205 Identities=56% Similarity=0.943 Sum_probs=187.1
Q ss_pred hcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHc
Q 043209 13 TELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAK 92 (221)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~ 92 (221)
...+++|||+++++ ....|.+||+|+|++|||||||||++.+++..++++|.+.+|. +|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHc
Confidence 45789999999988 4567889999999999999999999999999999999777764 499999999999999999999
Q ss_pred CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCC-eeecCCCCCCccHHHHHhhHHHHHHHh
Q 043209 93 GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPT-SFNPHQFKNPANPKTHYETTGPEIWEG 171 (221)
Q Consensus 93 g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (221)
|++|+||+|++++..+++.++.+||+|+.++.+.+++++.+.+++++++.++ +++++||+|+.++.+||.++++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864446788899999888744 558999999998778999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCC
Q 043209 172 TRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGG 219 (221)
Q Consensus 172 ~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~ 219 (221)
++..||+||+|+|+||+++|++.+|++.+|++|||+|||+++++++++
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~ 207 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGG 207 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCC
Confidence 976799999999999999999999999999999999999999888754
No 11
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-51 Score=353.21 Aligned_cols=206 Identities=23% Similarity=0.288 Sum_probs=191.8
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
.+|..++.++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+.+. .++||++|+||||
T Consensus 4 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g 79 (322)
T PRK07476 4 ADIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHG 79 (322)
T ss_pred HHHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHH
Confidence 356778999999999999999999998889999999999999999999999999999998875 3349999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+|+|++|+.+|++|+||||++++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++|++|+.+++ |+.
T Consensus 80 ~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~ 155 (322)
T PRK07476 80 RALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREE-GLTMVPPFDDPRIIA-GQG 155 (322)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcceee-chh
Confidence 9999999999999999999999999999999999999999875 788999999998887 789999999999996 899
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
++++||++|++ ++|+||+|+|+||+++|++.+||..+|++|||+|||++++++.
T Consensus 156 t~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~ 209 (322)
T PRK07476 156 TIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMH 209 (322)
T ss_pred HHHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 99999999994 7999999999999999999999999999999999999887653
No 12
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.5e-51 Score=360.60 Aligned_cols=206 Identities=25% Similarity=0.331 Sum_probs=192.4
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
++|..+++++.+.+++|||+++++|++..|++||+|+|++|||||||+|++.+.+..+.+.+. .++||++|+||||
T Consensus 5 ~~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg 80 (403)
T PRK08526 5 NKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHA 80 (403)
T ss_pred HHHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHH
Confidence 567788999999999999999999999889999999999999999999999999998876543 3559999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+++|++|+.+|++|+||||..++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.++. ||+
T Consensus 81 ~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~--~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i~-G~g 156 (403)
T PRK08526 81 QGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDN--YDEAYAFALEYAKEN-NLTFIHPFEDEEVMA-GQG 156 (403)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEeeCCCCCHHHHh-hhH
Confidence 9999999999999999999999999999999999999999864 899999999998887 799999999998875 999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
|+|.||++|+ +++|+||+|+|+||+++|++.++|..+|++|||||||+++++|.
T Consensus 157 tia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~ 210 (403)
T PRK08526 157 TIALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMY 210 (403)
T ss_pred HHHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHH
Confidence 9999999999 47999999999999999999999999999999999999999873
No 13
>PLN02970 serine racemase
Probab=100.00 E-value=4.8e-51 Score=351.07 Aligned_cols=205 Identities=18% Similarity=0.214 Sum_probs=189.8
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
++..+++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+++. .++||++|+||||.
T Consensus 13 ~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~ 88 (328)
T PLN02970 13 SIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAA 88 (328)
T ss_pred HHHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHH
Confidence 45567788999999999999999998888999999999999999999999999999875553 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhh
Q 043209 84 GMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYET 163 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (221)
|+|++|+.+|++|+||||++++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+++ ||.|
T Consensus 89 alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~la~~~-g~~~~~~~~n~~~~~-g~~t 164 (328)
T PLN02970 89 ALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPT--VESREAVAARVQQET-GAVLIHPYNDGRVIS-GQGT 164 (328)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchhh-ehHH
Confidence 999999999999999999999999999999999999999975 888889999998875 899999999999887 8999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
+++||++|++ .||+||+|+|+||+++|++.+||+.+|++|||+|||++++++.
T Consensus 165 ~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~ 217 (328)
T PLN02970 165 IALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAA 217 (328)
T ss_pred HHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHH
Confidence 9999999995 6999999999999999999999999999999999999998764
No 14
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.9e-50 Score=347.88 Aligned_cols=207 Identities=47% Similarity=0.770 Sum_probs=184.7
Q ss_pred hhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 043209 8 IANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMAC 87 (221)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~ 87 (221)
+++.+.+.+++|||++++++++.+|++||+|+|++|||||||+|++.+++.+++++|.+.++. +||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGG-TIVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHH
Confidence 477889999999999999999988999999999999999999999999999999999877764 4999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC------ChhHHHHHHHHHHhhC-CCeeecCCCCCCccHHHH
Q 043209 88 FAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM------GIDEEFRIVEELLNKI-PTSFNPHQFKNPANPKTH 160 (221)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~g 160 (221)
+|+.+|++|+||+|...+..+++.++.+||+|+.++... ..+.+.+.++++.++. .+++|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998631 1122344444554443 278999999999988779
Q ss_pred HhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 043209 161 YETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAI 215 (221)
Q Consensus 161 ~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~ 215 (221)
|.+++.||++|++.++|+||+|+|+||+++|++.+|++.+|++|||+|||++++.
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~ 216 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSAL 216 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCcc
Confidence 9999999999997679999999999999999999999999999999999999853
No 15
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=5.6e-51 Score=359.94 Aligned_cols=206 Identities=27% Similarity=0.379 Sum_probs=192.0
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
+++..+++++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.+++. .++||++|+||||
T Consensus 7 ~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g 82 (404)
T PRK08198 7 DDIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHA 82 (404)
T ss_pred HHHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHH
Confidence 356678899999999999999999998889999999999999999999999999999875543 4569999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+++|++|+.+|++|+||||++++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+++ ||.
T Consensus 83 ~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~~-g~~ 158 (404)
T PRK08198 83 QGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV--YDEALAKAQELAEET-GATFVHPFDDPDVIA-GQG 158 (404)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCCccHHH-HHH
Confidence 9999999999999999999999999999999999999999864 899999999999886 899999999999986 999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
|+|+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||||+++++|.
T Consensus 159 t~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~ 212 (404)
T PRK08198 159 TIGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMP 212 (404)
T ss_pred HHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHH
Confidence 9999999999 47999999999999999999999999999999999999998874
No 16
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=7.4e-51 Score=350.08 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=189.9
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
+.+..+++++...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+... ..+|+++|+||||
T Consensus 12 ~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g 87 (333)
T PRK08638 12 DDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHA 87 (333)
T ss_pred HHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHH
Confidence 456778999999999999999999998888999999999999999999999999998765332 3459999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
.|+|++|+.+|++|+||||++.+..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+++ ||.
T Consensus 88 ~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~~-g~~ 163 (333)
T PRK08638 88 QGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDN--FNDTIAKVEEIVEEE-GRTFIPPYDDPKVIA-GQG 163 (333)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEEcCcCCCcchhc-ccc
Confidence 9999999999999999999999999999999999999999864 889999999999887 789999999999986 999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
++++||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||+|||+++++|.
T Consensus 164 t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~ 217 (333)
T PRK08638 164 TIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMA 217 (333)
T ss_pred HHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 9999999999 57999999999999999999999999999999999999987654
No 17
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-51 Score=338.78 Aligned_cols=219 Identities=61% Similarity=0.977 Sum_probs=207.4
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
.+...+.+.+.+.+|+|||+++++....+.++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||+.+++++||||+|
T Consensus 37 ~~~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtG 116 (362)
T KOG1252|consen 37 AERILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTG 116 (362)
T ss_pred chhhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchH
Confidence 34456777889999999999999998878899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhH---HHHHHHHHHhhCCCeeecCCCCCCccHHH
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDE---EFRIVEELLNKIPTSFNPHQFKNPANPKT 159 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 159 (221)
.+||++|+..|++|+++||++.+.+|+..|+++|++|+++++...+.. ....+.++..+.|+.+.++||.||.|+.+
T Consensus 117 igLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~ 196 (362)
T KOG1252|consen 117 IGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLA 196 (362)
T ss_pred HHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccc
Confidence 999999999999999999999999999999999999999998766666 88999999999999999999999999999
Q ss_pred HHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCCCCC
Q 043209 160 HYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221 (221)
Q Consensus 160 g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~~~~ 221 (221)
||.++++||++|+.+++|.+|.++|||||++|+.+++|+.+|++||++|||.+|..+.++.+
T Consensus 197 hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~ 258 (362)
T KOG1252|consen 197 HYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKP 258 (362)
T ss_pred ccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888753
No 18
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.9e-50 Score=356.25 Aligned_cols=204 Identities=26% Similarity=0.348 Sum_probs=190.1
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
++..++.++...+++|||++++.|++..|++||+|+|++|||||||+|++.+++..+.+.+. ...||++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 45578889999999999999999998899999999999999999999999999988776553 34499999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhh
Q 043209 84 GMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYET 163 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (221)
|+|++|+.+|++|+||||+.++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+++ |++|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~--~~~a~~~a~~la~~~-~~~~v~~~~~~~~i~-g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD--YDEAHRYADKIAMDE-NRTFIEAFNDRWVIS-GQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCccCChHHHH-HHHH
Confidence 999999999999999999999999999999999999999875 889999999999887 899999999999986 9999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
+++||++|+ +.+|+||+|+|+||+++|++.++|..+|++|||||||+++++|
T Consensus 163 ~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~ 214 (406)
T PRK06382 163 IGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSM 214 (406)
T ss_pred HHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 999999999 4799999999999999999999999999999999999999876
No 19
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3.2e-50 Score=344.40 Aligned_cols=206 Identities=22% Similarity=0.275 Sum_probs=189.8
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
.++..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+... ..+||++|+||||
T Consensus 4 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g 79 (317)
T TIGR02991 4 QDIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHG 79 (317)
T ss_pred HHHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHH
Confidence 367788999999999999999999998888999999999999999999999999988764321 3459999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
.|+|++|+.+|++|++|||...+..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+++++ ||+
T Consensus 80 ~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~~-g~~ 155 (317)
T TIGR02991 80 RALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRS--QDDAQEEVERLVADR-GLTMLPPFDHPDIVA-GQG 155 (317)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHHh-hHH
Confidence 9999999999999999999999999999999999999999975 888889999998886 789999999999986 899
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
|+++||++|+ +++|+||+|+|+||+++|++++||+++|++|||+|||++++++.
T Consensus 156 t~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~ 209 (317)
T TIGR02991 156 TLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMK 209 (317)
T ss_pred HHHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHH
Confidence 9999999999 46899999999999999999999999999999999999888774
No 20
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.4e-50 Score=362.23 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=185.5
Q ss_pred HhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAA 90 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~ 90 (221)
++...+.+|||+++++|++.+|++||+|+|++|||||||+|+|++++..+.++.. .+.||++|+||||.++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999988764332 344999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHH
Q 043209 91 AKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWE 170 (221)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (221)
.+|++|+||||..++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.++. |++|+|.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~--~d~a~~~A~~la~e~-g~~~v~pfdd~~via-GqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHALKLAEEE-GLTFVPPFDDPDVIA-GQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeeCCCCChHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999864 899999999999987 789999999999996 99999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 171 GTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 171 q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
|++..+|+||+|+|+||+++|++.++|..+|++|||||||+++++|.
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~ 228 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQ 228 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhh
Confidence 99656999999999999999999999999999999999999999875
No 21
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3e-50 Score=345.55 Aligned_cols=205 Identities=20% Similarity=0.219 Sum_probs=188.8
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
++..+++++...+++|||+++++|++.+|.+||+|+|++||+||||||++.+++..+.+++... ..|+++|+||||+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~ 83 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQ 83 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHH
Confidence 5677889999999999999999999888899999999999999999999999999998876433 3499999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhh
Q 043209 84 GMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYET 163 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (221)
|+|++|+++|++|+||||.+.+..|++.++.+||+|+.++. +++++.+.++++++++ +++|++++ |+.+++ ||.|
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~-G~~t 158 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLVR-GVAT 158 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHHh-ccch
Confidence 99999999999999999999999999999999999999975 4889999999998886 78999998 667775 9999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
+++||++|++ ++|+||+|+|+||+++|++.+|++.+|++|||+|||++++++.
T Consensus 159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~ 211 (322)
T PRK06110 159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYA 211 (322)
T ss_pred HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHH
Confidence 9999999995 7999999999999999999999999999999999999998764
No 22
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.2e-49 Score=335.98 Aligned_cols=200 Identities=55% Similarity=0.906 Sum_probs=183.9
Q ss_pred CCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeE
Q 043209 17 GNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKL 96 (221)
Q Consensus 17 ~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~ 96 (221)
|+|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.++|...++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999988889999999999999999999999999999999875555 45999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCC
Q 043209 97 ILVMPAFMSLEKRIILQAYGAQLILTNAEM--GIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRG 174 (221)
Q Consensus 97 ~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~ 174 (221)
+||+|.+.+..+++.++.+||+|+.++.+. +.+++.+.+++++++.++++|+++|+||.++++|++|+++||.+|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998762 237888899998888768999999999999984455999999999976
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 175 QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 175 ~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
.||+||+|+|+||+++|++.+|+..+|++|||+|||++++++.
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~ 202 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFS 202 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccC
Confidence 7999999999999999999999999999999999999998873
No 23
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.9e-49 Score=347.22 Aligned_cols=209 Identities=39% Similarity=0.618 Sum_probs=181.5
Q ss_pred chhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 043209 7 AIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMA 86 (221)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA 86 (221)
+....+.+.+++|||+++++|+...|++||+|+|++|||||||||++.+++..++++|.+.++.. |+++||||||.|+|
T Consensus 42 ~~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA 120 (423)
T PLN02356 42 KPRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLA 120 (423)
T ss_pred chhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHH
Confidence 35566888899999999999988888999999999999999999999999999999887767644 88899999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-----CChh-HHH---HHHHHHHhh----------------
Q 043209 87 CFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE-----MGID-EEF---RIVEELLNK---------------- 141 (221)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-----~~~~-~~~---~~a~~~~~~---------------- 141 (221)
++|+.+|++|+||||++++..|++.++.+||+|+.+++. .++. .+. ..+++++++
T Consensus 121 ~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~ 200 (423)
T PLN02356 121 TVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTN 200 (423)
T ss_pred HHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999999999999999999999999999641 1221 111 234444433
Q ss_pred ----------------CCCeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEE
Q 043209 142 ----------------IPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKV 205 (221)
Q Consensus 142 ----------------~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kv 205 (221)
.++.+|++||+|+.++.+|+..+|+||++|+++++|+||+|+||||+++|++++||+.+|++||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkV 280 (423)
T PLN02356 201 GCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKC 280 (423)
T ss_pred cccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEE
Confidence 1477899999999998777777899999999778999999999999999999999999999999
Q ss_pred EEEeCCCCccC
Q 043209 206 YGVEPAESAIL 216 (221)
Q Consensus 206 igVe~~~s~~~ 216 (221)
++|||++|+.+
T Consensus 281 igVep~~s~~~ 291 (423)
T PLN02356 281 FLIDPPGSGLF 291 (423)
T ss_pred EEEecCCCccc
Confidence 99999998644
No 24
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3.6e-50 Score=344.99 Aligned_cols=205 Identities=20% Similarity=0.248 Sum_probs=189.0
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
.++..+++++...+++|||++++++++..|++||+|+|++|||||||||++.+++.++.+.+. ..+||++|+||||
T Consensus 9 ~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g 84 (321)
T PRK07048 9 DDVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHA 84 (321)
T ss_pred HHHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHH
Confidence 356778999999999999999999988888999999999999999999999999998875432 3459999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+|+|++|+.+|++|++|||.+.+..|++.++.+||+|+.++.. ++++.+.+++++++. +++|++||+|+.+++ |+.
T Consensus 85 ~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~~-g~~ 160 (321)
T PRK07048 85 QAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHVIA-GQG 160 (321)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcchhh-ccc
Confidence 9999999999999999999999999999999999999999975 778888899998887 799999999999885 999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
|+++||++|++ .||+||+|+|+||+++|++.++|+.+|++|||||||++++++
T Consensus 161 t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~ 213 (321)
T PRK07048 161 TAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDG 213 (321)
T ss_pred hHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhH
Confidence 99999999994 799999999999999999999999999999999999998754
No 25
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=8.7e-50 Score=351.96 Aligned_cols=207 Identities=23% Similarity=0.333 Sum_probs=187.8
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
+|..+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++++++..+.+... .+.||++|+||||.
T Consensus 2 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~ 77 (409)
T TIGR02079 2 DIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQ 77 (409)
T ss_pred hHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 46678899999999999999999998889999999999999999999999999987543322 34599999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE---EEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHH
Q 043209 84 GMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL---ILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTH 160 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V---~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 160 (221)
++|++|+.+|++|+||||+.++..|++.++.+||+| +.++. +++++.+.+++++++. +++|++||+|+.+++ |
T Consensus 78 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~-g 153 (409)
T TIGR02079 78 GFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGD--TFDQCAAAAREHVEDH-GGTFIPPFDDPRIIE-G 153 (409)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCHhHhh-h
Confidence 999999999999999999999999999999999974 34443 4899999999999887 789999999999986 8
Q ss_pred HhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 161 YETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 161 ~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
++|++.||++|++..||+||+|+|+||+++|++.+||+.+|++|||||||+++++|..
T Consensus 154 ~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~ 211 (409)
T TIGR02079 154 QGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKA 211 (409)
T ss_pred hHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHH
Confidence 9999999999996569999999999999999999999999999999999999998753
No 26
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=4.7e-50 Score=353.62 Aligned_cols=207 Identities=25% Similarity=0.305 Sum_probs=191.3
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
+++..+++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+... ...||++|+||||
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g 83 (403)
T PRK07334 8 ADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHA 83 (403)
T ss_pred HHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHH
Confidence 467789999999999999999999998888999999999999999999999999998754432 3349999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+|+|++|+.+|++|+||||...+..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+++ ||.
T Consensus 84 ~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~--~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~-g~~ 159 (403)
T PRK07334 84 QGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGET--LDEARAHARELAEEE-GLTFVHPYDDPAVIA-GQG 159 (403)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEecCCCCCHHHHH-hHH
Confidence 9999999999999999999999999999999999999999764 889999999998886 899999999999986 999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
|+++||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||+|||++++++++
T Consensus 160 t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~ 214 (403)
T PRK07334 160 TVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYA 214 (403)
T ss_pred HHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHH
Confidence 9999999999 579999999999999999999999999999999999999988853
No 27
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=8.3e-50 Score=353.48 Aligned_cols=207 Identities=23% Similarity=0.351 Sum_probs=187.6
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
++|..+++++.+.+++|||+++++|++..|++||+|+|++|||||||+|+|.+++..+.+... ..+||++|+||||
T Consensus 10 ~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g 85 (420)
T PRK08639 10 KDIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHA 85 (420)
T ss_pred HHHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHH
Confidence 356678899999999999999999998889999999999999999999999999988543221 3459999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE---EeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHH
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI---LTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKT 159 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~---~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~ 159 (221)
.++|++|+.+|++|+||||+.++..|++.++.+||+|+ .++. +++++.+.+++++++. |++|++||+|+.++.
T Consensus 86 ~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~--~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~~- 161 (420)
T PRK08639 86 QGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGD--TFDDSAAAAQEYAEET-GATFIPPFDDPDVIA- 161 (420)
T ss_pred HHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCc--CHHHHHHHHHHHHHhc-CCcccCCCCChhHhc-
Confidence 99999999999999999999999999999999999754 3333 4899999999999886 799999999999986
Q ss_pred HHhhHHHHHHHhhCCC--CCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 160 HYETTGPEIWEGTRGQ--VDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 160 g~~t~~~Ei~~q~~~~--~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
|+.|+|.||++|++.. ||+||+|+|+||+++|++.++|+.+|++|||||||++|++|.
T Consensus 162 G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~ 221 (420)
T PRK08639 162 GQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMK 221 (420)
T ss_pred chhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHH
Confidence 9999999999999655 999999999999999999999999999999999999999874
No 28
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.5e-49 Score=338.68 Aligned_cols=206 Identities=26% Similarity=0.338 Sum_probs=192.4
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
++|..+++.+.+.+++|||+++++|++.+|.+||+|+|++|||||||||.+.+++.++++.+. ...||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 568889999999999999999999998888999999999999999999999999999887762 2349999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+|+|++|+.+|++|++|+|.+.+..++++++.+||+|+.++.+ ++++.+.+++++++. +++|++|++|+.+++ |+.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~~-g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVIA-GQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchhc-cHH
Confidence 9999999999999999999999999999999999999999985 889999999999886 799999999999886 899
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
++++||++|++ .||+||+|+|||||++|++.+||..+|++|||+|||.+++++.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~ 207 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMA 207 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHH
Confidence 99999999996 4999999999999999999999999999999999999988763
No 29
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1e-49 Score=341.62 Aligned_cols=208 Identities=21% Similarity=0.231 Sum_probs=190.5
Q ss_pred CccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChH
Q 043209 2 GSEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNT 81 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~ 81 (221)
.+++..+++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+... ...||++|+|||
T Consensus 4 ~~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~ 79 (317)
T PRK06815 4 FDAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNH 79 (317)
T ss_pred HHHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChH
Confidence 3567789999999999999999999998888999999999999999999999999987643321 345999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHH
Q 043209 82 GIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHY 161 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 161 (221)
|+|+|++|+.+|++|+||||...+..+++.++.+||+|+.++.+ ++++...+++++++. +++|++|++|+.++. ||
T Consensus 80 g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~ 155 (317)
T PRK06815 80 GQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVIA-GQ 155 (317)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhhc-ch
Confidence 99999999999999999999999999999999999999999985 788888999998886 789999999999886 99
Q ss_pred hhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 162 ETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 162 ~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
+++++||++|++ .+|+||+|+|+||+++|++.+|++.+|++|||||||++++++.+
T Consensus 156 ~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~ 211 (317)
T PRK06815 156 GTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYT 211 (317)
T ss_pred hHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHH
Confidence 999999999995 69999999999999999999999999999999999999988753
No 30
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-49 Score=341.45 Aligned_cols=205 Identities=21% Similarity=0.215 Sum_probs=188.0
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
++|..+++++...+++|||+++++|++.+|++||+|+|++||+||||||++.+++.++.++|.+. ++||++|+||||
T Consensus 8 ~~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g 84 (338)
T PRK06608 8 QNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHG 84 (338)
T ss_pred HHHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHH
Confidence 45678899999999999999999999989999999999999999999999999999999988532 459999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+|+|++|+.+|++|++|||...+..|++.++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+++ |+.
T Consensus 85 ~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~-g~~ 158 (338)
T PRK06608 85 QAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIA-GAG 158 (338)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhc-cHH
Confidence 999999999999999999999999999999999999999964 3567777777 544 4899999999999986 899
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
+++.||++|++.++|+||+|+|+||+++|++.++++.+|++|||||||++++++
T Consensus 159 t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~ 212 (338)
T PRK06608 159 TLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDA 212 (338)
T ss_pred HHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHH
Confidence 999999999976899999999999999999999999999999999999999765
No 31
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.6e-49 Score=343.01 Aligned_cols=203 Identities=27% Similarity=0.332 Sum_probs=183.7
Q ss_pred chhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 043209 7 AIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMA 86 (221)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA 86 (221)
...++++..+|+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|
T Consensus 17 ~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA 91 (351)
T PRK06352 17 DKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAA 91 (351)
T ss_pred CCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHH
Confidence 33445788999999999999998888999999999999999999999999999999883 4699999999999999
Q ss_pred HHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHH
Q 043209 87 CFAAAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTG 165 (221)
Q Consensus 87 ~~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (221)
++|+.+|++|+||||++ .+..|++.++.+||+|+.++.+ ++++.+.+++++++. ++++.+ +.|+++++ ||.|++
T Consensus 92 ~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~t~~ 166 (351)
T PRK06352 92 AYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--FDEALKSVRELAETE-AVTLVN-SVNPYRLE-GQKTAA 166 (351)
T ss_pred HHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cccccc-CCCcccee-eHHHHH
Confidence 99999999999999997 5899999999999999999875 889999999998875 666665 56999996 899999
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-----cEEEEEeCCCCccCCCC
Q 043209 166 PEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPE-----IKVYGVEPAESAILNGG 219 (221)
Q Consensus 166 ~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~-----~kvigVe~~~s~~~~~~ 219 (221)
+||++|++..||+||+|+|+||+++|++++||+++|+ +|||+|||++++++..|
T Consensus 167 ~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g 225 (351)
T PRK06352 167 FEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQG 225 (351)
T ss_pred HHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhC
Confidence 9999999767999999999999999999999998877 89999999999876544
No 32
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=9.2e-49 Score=350.63 Aligned_cols=206 Identities=46% Similarity=0.796 Sum_probs=186.5
Q ss_pred hHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 043209 9 ANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACF 88 (221)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~ 88 (221)
++.+...+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.++|.+.+|. +|+++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGD-TIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHH
Confidence 45677889999999999999888889999999999999999999999999999999888874 59999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh---HHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHH
Q 043209 89 AAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGID---EEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTG 165 (221)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~ 165 (221)
|+.+|++|++|+|++++..|++.++.+||+|+.++....++ ...+.+++++++.++.+|++||+|+.++.+||.++|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998642233 235677788777556788999999999877999999
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 043209 166 PEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAI 215 (221)
Q Consensus 166 ~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~ 215 (221)
+||++|+++.||+||+|+||||+++|++.+|++.+|++|||||||++|+.
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~ 210 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSIL 210 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcc
Confidence 99999997689999999999999999999999999999999999999863
No 33
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.3e-49 Score=357.17 Aligned_cols=199 Identities=22% Similarity=0.349 Sum_probs=184.5
Q ss_pred HhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAA 90 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~ 90 (221)
++.+.+.+|||+++++|++.+|++||+|+|++|||||||+|++.+.+..+.+... +..||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 4558899999999999999999999999999999999999999999998854432 344999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHH
Q 043209 91 AKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWE 170 (221)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (221)
++|++|+||||.+++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.++. |++|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~--~dea~~~A~~la~e~-g~~fi~pfddp~via-GqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDS--YDEAQAYAKQRALEE-GRTFIPPFDHPDVIA-GQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEECCCCChHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999875 899999999999886 789999999999986 99999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 171 GTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 171 q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
|++..+|+||+|+|+||+++|++.++|..+|++|||||||+++++|.
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~ 300 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 99656999999999999999999999999999999999999998874
No 34
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.7e-49 Score=338.56 Aligned_cols=197 Identities=23% Similarity=0.302 Sum_probs=179.7
Q ss_pred CCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEE
Q 043209 18 NTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLI 97 (221)
Q Consensus 18 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ 97 (221)
+|||++++++++..|++||+|+|++||+||||||++.+++.+++++|. .++ ++||++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999999884 223 459999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCC--C
Q 043209 98 LVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRG--Q 175 (221)
Q Consensus 98 ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--~ 175 (221)
||+|...+..+++.|+.+||+|+.++.+ .++++.+.+++++++.++++|++|++|+.+++ ||.++++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIWE-GHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhhc-cccHHHHHHHHHccccCC
Confidence 9999999999999999999999999875 26677778888877755799999999999997 889999999999965 5
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccCCC
Q 043209 176 VDIFVSGIGTGGTVSGVGNFLKKKN-PEIKVYGVEPAESAILNG 218 (221)
Q Consensus 176 ~d~vv~p~G~Gg~~~Gi~~~~~~~~-~~~kvigVe~~~s~~~~~ 218 (221)
||+||+|+|+||+++|++.+|++.+ |++|||+|||++|++|.+
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~ 200 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNA 200 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHH
Confidence 9999999999999999999999996 999999999999987753
No 35
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=4.7e-49 Score=344.58 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=178.9
Q ss_pred cCCCceeecccccCCCC--------CeEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 043209 16 IGNTPMVYLNNIVDGCK--------ARIAAKLEMMEP-CSSVKDRIAFSMIKD-----AEEKGLITPGK----------- 70 (221)
Q Consensus 16 ~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGs~K~R~a~~~~~~-----a~~~g~~~~g~----------- 70 (221)
+++|||+++++|++.+| .+||+|+|++|| |||||||++.+++.. +++.|.+.|+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999887654 799999999999 999999999999864 77888877764
Q ss_pred -----eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCe
Q 043209 71 -----TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTS 145 (221)
Q Consensus 71 -----~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~ 145 (221)
.+||++|+||||.|+|++|+.+|++|+||||++++..|++.++.+||+|+.++.+ ++++.+.+++++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~--~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETD--YSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHHCCCe
Confidence 3799999999999999999999999999999999999999999999999999864 899999999999887678
Q ss_pred eecCCCCCCccHHHHHhhHHHHHHHhhCC---C-----CCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccC
Q 043209 146 FNPHQFKNPANPKTHYETTGPEIWEGTRG---Q-----VDIFVSGIGTGGTVSGVGNFLKKK-NPEIKVYGVEPAESAIL 216 (221)
Q Consensus 146 ~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~---~-----~d~vv~p~G~Gg~~~Gi~~~~~~~-~~~~kvigVe~~~s~~~ 216 (221)
+|+++++++..+ +||.|+|+||++|+++ + ||+||+|+|+||+++|++.+||+. +|+++||+|||++++.+
T Consensus 208 ~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 899997666655 5999999999999952 3 458999999999999999999997 79999999999999876
No 36
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=4.2e-49 Score=354.08 Aligned_cols=200 Identities=27% Similarity=0.349 Sum_probs=185.5
Q ss_pred HhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAA 90 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~ 90 (221)
++.+.+.+|||+++++|++.+|++||+|+|++||+||||+|+|.+++..+.+... ...||++|+||||.++|++|+
T Consensus 10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~ 85 (499)
T TIGR01124 10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAA 85 (499)
T ss_pred HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHH
Confidence 6788899999999999999899999999999999999999999999988743322 345999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHH
Q 043209 91 AKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWE 170 (221)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (221)
++|++|+||||.+++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.++. |++|+|.||++
T Consensus 86 ~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~--~d~a~~~a~~la~~~-g~~~i~p~~~~~~i~-G~gtig~EI~~ 161 (499)
T TIGR01124 86 RLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGAN--FDDAKAKAIELSQEK-GLTFIHPFDDPLVIA-GQGTLALEILR 161 (499)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCcC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHHH-hhHHHHHHHHH
Confidence 99999999999999999999999999999999864 899999999999987 789999999999986 99999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 171 GTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 171 q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
|++.++|+||+|+|+||+++|++.++|..+|++|||||||+++++|.+
T Consensus 162 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~ 209 (499)
T TIGR01124 162 QVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQ 209 (499)
T ss_pred hCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHH
Confidence 996679999999999999999999999999999999999999988754
No 37
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=4.3e-49 Score=345.50 Aligned_cols=190 Identities=29% Similarity=0.409 Sum_probs=179.4
Q ss_pred CceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 043209 19 TPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLIL 98 (221)
Q Consensus 19 TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~i 98 (221)
|||+++++|++..|++||+|+|++|||||||||++.+++.++.+++. ..+||++|+||||.++|++|+.+|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999999899999999999999999999999999999988775 34599999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCE
Q 043209 99 VMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDI 178 (221)
Q Consensus 99 vvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~ 178 (221)
|||+.++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.++. ||.|++.||++|++ ++|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~-g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGDD--YDEAYAFATSLAEEE-GRVFVHPFDDEFVMA-GQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCChhhhh-hhHHHHHHHHHhCC-CCCE
Confidence 999999999999999999999999864 899999999999886 889999999999885 99999999999994 7999
Q ss_pred EEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 179 FVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 179 vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
||+|+|+||+++|++.++|+.+|++|||||||++++++.
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~ 190 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMY 190 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 999999999999999999999999999999999998874
No 38
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=333.56 Aligned_cols=201 Identities=26% Similarity=0.354 Sum_probs=184.1
Q ss_pred ccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 3 SEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
++|..+++++...+++|||++++.++.. +.+||+|+|++|||||||||++.+++..+.+ + .+.||++|+||||
T Consensus 8 ~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g 80 (310)
T PRK08246 8 SDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAG 80 (310)
T ss_pred HHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHH
Confidence 4677889999999999999999998865 7899999999999999999999999988765 2 3459999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+|+|++|+.+|++|+||+|+..+..+++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+++++ ||+
T Consensus 81 ~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i~-g~~ 156 (310)
T PRK08246 81 LAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE--YADALEAAQAFAAET-GALLCHAYDQPEVLA-GAG 156 (310)
T ss_pred HHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeCCCCCChhhhc-chH
Confidence 9999999999999999999999999999999999999999874 888999999988886 899999999999986 999
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
|+++||++|+ +.||+||+|+|+||+++|++.+|+. .+|||+|||++++++.+
T Consensus 157 t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~ 208 (310)
T PRK08246 157 TLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHA 208 (310)
T ss_pred HHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHH
Confidence 9999999999 5799999999999999999999964 48999999999988753
No 39
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3e-48 Score=332.87 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=180.1
Q ss_pred hcccCCCceeecccccCCCC-CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 043209 13 TELIGNTPMVYLNNIVDGCK-ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAA 91 (221)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~ 91 (221)
...+++|||+++++|++.+| .+||+|+|++|||||||||++.+++.+++++| .++||++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLG-----YSGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHH
Confidence 45699999999999998888 69999999999999999999999999999988 3569999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCC-CC-ccHHHHHhhHHHHHH
Q 043209 92 KGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFK-NP-ANPKTHYETTGPEIW 169 (221)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-n~-~~~~~g~~t~~~Ei~ 169 (221)
+|++|+||||...+..+++.++.+||+|+.++.+ ++++.+.+++++++. ++|++++++ |+ .+++ ||.++++||+
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~-G~~t~a~Ei~ 160 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDIE-AYSAIAYEIY 160 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHhh-hHHHHHHHHH
Confidence 9999999999999999999999999999999975 888999999998875 788988886 76 5676 9999999999
Q ss_pred HhhCCCCCEEEEccCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCccC
Q 043209 170 EGTRGQVDIFVSGIGTGGTVSGVGNFLKKK------NPEIKVYGVEPAESAIL 216 (221)
Q Consensus 170 ~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~------~~~~kvigVe~~~s~~~ 216 (221)
+|++..||+||+|+|+||+++|++.+|++. +|.+|||+|||.+++++
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~ 213 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQI 213 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHH
Confidence 999767999999999999999999999998 79999999999998665
No 40
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.3e-48 Score=352.12 Aligned_cols=199 Identities=28% Similarity=0.391 Sum_probs=185.2
Q ss_pred HhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAA 90 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~ 90 (221)
++.+.+.+|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||.++|++|+
T Consensus 13 ~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa~ 88 (504)
T PRK09224 13 RVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSAA 88 (504)
T ss_pred HhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHHH
Confidence 6788999999999999999899999999999999999999999999998764322 456999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHH
Q 043209 91 AKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWE 170 (221)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (221)
.+|++|+||||.+++..|++.++.+||+|+.++.+ |+++.+.+++++++. +++|++||+|+.++. |++|++.||++
T Consensus 89 ~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~--~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i~-G~gTi~~EI~~ 164 (504)
T PRK09224 89 RLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDS--FDEAYAHAIELAEEE-GLTFIHPFDDPDVIA-GQGTIAMEILQ 164 (504)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcHHHH-hHHHHHHHHHH
Confidence 99999999999999999999999999999999864 899999999999886 899999999999996 99999999999
Q ss_pred hhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 171 GTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 171 q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
|++..+|+||+|+||||+++|++.++|..+|++|||||||+++++|.
T Consensus 165 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~ 211 (504)
T PRK09224 165 QHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLK 211 (504)
T ss_pred hccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 99655999999999999999999999999999999999999998875
No 41
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.2e-48 Score=342.16 Aligned_cols=198 Identities=24% Similarity=0.257 Sum_probs=184.1
Q ss_pred HhhcccCCCceeecccccCCCC-CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCK-ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
.++..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+.++| ..+|+++|+||+|.|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELG-----VKHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHH
Confidence 3788999999999999988888 59999999999999999999999999999988 35699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHH
Q 043209 90 AAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIW 169 (221)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (221)
+.+|++|+||+|++++..|+++++.+||+|+.++.+ ++++.+.+++++++. +++++++++||++++ |+.|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~~np~~ie-G~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTLKEPYRIE-GKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCCCCccchh-cHHHHHHHHH
Confidence 999999999999999999999999999999999875 888889999988886 799999999999997 8999999999
Q ss_pred HhhCCC-CCEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccCC
Q 043209 170 EGTRGQ-VDIFVSGIGTGGTVSGVGNFLKKK-------NPEIKVYGVEPAESAILN 217 (221)
Q Consensus 170 ~q~~~~-~d~vv~p~G~Gg~~~Gi~~~~~~~-------~~~~kvigVe~~~s~~~~ 217 (221)
+|++++ ||+||+|+|+|++++|++.+|+++ ++.+|||+|||++++++.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~ 278 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIV 278 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHH
Confidence 999754 999999999999999999999997 488999999999998764
No 42
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-48 Score=330.58 Aligned_cols=203 Identities=24% Similarity=0.277 Sum_probs=190.0
Q ss_pred chhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHH
Q 043209 7 AIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMA 86 (221)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA 86 (221)
-.+..++..+..|||.+.--|++.+|.++|+|+|++||+||||.|++.+++..+-++++ +..|+++|.||||.|+|
T Consensus 55 ~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~A 130 (457)
T KOG1250|consen 55 SAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAA 130 (457)
T ss_pred hhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHH
Confidence 34556788899999999988999999999999999999999999999999999877764 45699999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHH
Q 043209 87 CFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGP 166 (221)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (221)
++|+++|++++||||..++.-+++.++.+||+|++.+.+ ++++..++.++++++ |+.|+++||||+.|+ |++|++.
T Consensus 131 yaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~--~deAk~~a~~lAke~-gl~yI~pfDhP~I~a-GqgTig~ 206 (457)
T KOG1250|consen 131 YAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGED--WDEAKAFAKRLAKEN-GLTYIPPFDHPDIWA-GQGTIGL 206 (457)
T ss_pred HHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEeccc--HHHHHHHHHHHHHhc-CceecCCCCCchhhc-CcchHHH
Confidence 999999999999999999999999999999999999886 999999999999998 999999999999996 9999999
Q ss_pred HHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 167 EIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 167 Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
||.+|++..+++|+||||+||+++||+.|+++..|+++|||||+++|++|.
T Consensus 207 EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~ 257 (457)
T KOG1250|consen 207 EILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFN 257 (457)
T ss_pred HHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHH
Confidence 999999766669999999999999999999999999999999999998763
No 43
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=5.3e-48 Score=332.45 Aligned_cols=194 Identities=25% Similarity=0.293 Sum_probs=180.0
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
++..+++++...+.+|||++++.+ +||+|+|++|||||||||++.+++..+.+.+. .+.||++|+||||.
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~ 94 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHH
Confidence 566788999999999999998765 49999999999999999999999999999885 33599999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhh
Q 043209 84 GMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYET 163 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t 163 (221)
|+|++|+.+|++|+||||.+++..|++.++.+||+|+.++.+ |+++.+.+++++++. +++|+++|+|+++++ ||+|
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~--~~~a~~~a~~la~~~-g~~~v~~~~np~~i~-G~~T 170 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNS--YDEAYAFARELADQN-GYRFLSAFDDPDVIA-GQGT 170 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCccCChHHHH-HHHH
Confidence 999999999999999999999999999999999999999774 899999999999887 899999999999997 9999
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
+|+||++|. ||+||+|+|+||+++|++.+||+ +.+|||||||++++++
T Consensus 171 ig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~ 218 (349)
T PRK08813 171 VGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSM 218 (349)
T ss_pred HHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchH
Confidence 999999874 79999999999999999999996 5699999999998775
No 44
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=7e-48 Score=340.80 Aligned_cols=199 Identities=20% Similarity=0.220 Sum_probs=179.1
Q ss_pred cCCCceeecccccCCCC--------CeEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 043209 16 IGNTPMVYLNNIVDGCK--------ARIAAKLEMMEP-CSSVKDRIAFSMIKD-----AEEKGLITPGK----------- 70 (221)
Q Consensus 16 ~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGs~K~R~a~~~~~~-----a~~~g~~~~g~----------- 70 (221)
+++|||++++.+++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999998887664 699999999999 999999999999875 45677666553
Q ss_pred -----eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCe
Q 043209 71 -----TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTS 145 (221)
Q Consensus 71 -----~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~ 145 (221)
.+||++|+||||.|+|++|+.+|++|+||||++++..|++.++.+||+|+.++.+ |+++.+.+++++++.++.
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~--~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGD--YGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhcCCe
Confidence 3699999999999999999999999999999999999999999999999999975 899999999998887678
Q ss_pred eecCCCCCCccHHHHHhhHHHHHHHhhCC--------CCCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccC
Q 043209 146 FNPHQFKNPANPKTHYETTGPEIWEGTRG--------QVDIFVSGIGTGGTVSGVGNFLKKK-NPEIKVYGVEPAESAIL 216 (221)
Q Consensus 146 ~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~p~G~Gg~~~Gi~~~~~~~-~~~~kvigVe~~~s~~~ 216 (221)
+|+++++++..++ ||+|+++||++|+++ .||+||+|+|+||+++|++.+||+. +|++|||+|||++++++
T Consensus 231 ~~~~~~~~~~~ia-G~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTLFL-GYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhHHH-hHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 9999998887775 999999999999963 2669999999999999999999997 68999999999999876
Q ss_pred C
Q 043209 217 N 217 (221)
Q Consensus 217 ~ 217 (221)
.
T Consensus 310 ~ 310 (441)
T PRK02991 310 L 310 (441)
T ss_pred H
Confidence 3
No 45
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=7.7e-48 Score=334.38 Aligned_cols=200 Identities=26% Similarity=0.324 Sum_probs=181.2
Q ss_pred HHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 10 NDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
++++..+|+|||++++.|++..|++||+|+|++|||||||||++.+++..++++|. .+||++|+||||.++|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 34678999999999999988888899999999999999999999999999998883 4699999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHH
Q 043209 90 AAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEI 168 (221)
Q Consensus 90 ~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (221)
+.+|++|+||||+. .+..|++.++.+||+|+.++.. ++++.+.+++++++. +++++++ .|+.+++ ||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~~-g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGN--FDDALEIVRELAEKY-PVTLVNS-VNPYRIE-GQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CceecCC-CCchhhh-hHHHHHHHH
Confidence 99999999999997 6889999999999999999975 889999999998887 5777765 5999986 889999999
Q ss_pred HHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccCCCC
Q 043209 169 WEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNP------EIKVYGVEPAESAILNGG 219 (221)
Q Consensus 169 ~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~------~~kvigVe~~~s~~~~~~ 219 (221)
++|++..+|+||+|+|+||+++|++.+|++..+ .+|||+|||++++++..|
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g 229 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRG 229 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhC
Confidence 999966799999999999999999999998743 599999999999877654
No 46
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=8.2e-48 Score=340.58 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=185.0
Q ss_pred HhhcccCCCceeecccccCCCC-CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCK-ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
.++..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..|.+.|. ..|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 3788999999999999998888 599999999999999999999999999999884 4599999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHH
Q 043209 90 AAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIW 169 (221)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~ 169 (221)
+.+|++|+||||.+++..|+.+++.+||+|+.++.+ ++++.+.+++++++.++++|.+++.||+.++ |++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ie-G~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNINLRPYYAE-GSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCCCCccccc-chHHHHHHHH
Confidence 999999999999999999999999999999999985 8899999999988876789999888999987 9999999999
Q ss_pred HhhCCC-CCEEEEccCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccCC
Q 043209 170 EGTRGQ-VDIFVSGIGTGGTVSGVGNFLKKK-------NPEIKVYGVEPAESAILN 217 (221)
Q Consensus 170 ~q~~~~-~d~vv~p~G~Gg~~~Gi~~~~~~~-------~~~~kvigVe~~~s~~~~ 217 (221)
+|++++ ||+||+|+|+||+++|++.+|+++ .+.+|||+|||++++++.
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~ 289 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIA 289 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHH
Confidence 999755 999999999999999999999997 588999999999987765
No 47
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=2.4e-47 Score=330.88 Aligned_cols=206 Identities=25% Similarity=0.343 Sum_probs=182.1
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
++.....+++..+++|||++++++++..|.+||+|+|++|||||||||++.+++.+++++| ..+||++|+||||+
T Consensus 14 p~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g-----~~~vV~aSsGN~G~ 88 (352)
T PRK06721 14 PVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEG-----SEAIICASTGNTSA 88 (352)
T ss_pred CCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCC-----CCEEEEECCcHHHH
Confidence 4444556688899999999999998888889999999999999999999999999999988 35699999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHh
Q 043209 84 GMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~ 162 (221)
|+|++|+.+|++|++|||+.. +..|++.++.+||+|+.++.+ ++++.+.+++++++. ++++++ +.|+.+++ ||.
T Consensus 89 alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~~-G~~ 163 (352)
T PRK06721 89 SAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGN--FDDALKAVRNIAAEE-PITLVN-SVNPYRIE-GQK 163 (352)
T ss_pred HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhC-Cceecc-CCCchhhh-hhh
Confidence 999999999999999999874 788999999999999999864 888999999998886 566665 56888887 899
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHH----HHHHhcC-CCcEEEEEeCCCCccCCCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVG----NFLKKKN-PEIKVYGVEPAESAILNGG 219 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~----~~~~~~~-~~~kvigVe~~~s~~~~~~ 219 (221)
|+++||++|++..+|+||+|+|+||+++|++ .++|+.+ |++|||+|||++++++..|
T Consensus 164 t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g 225 (352)
T PRK06721 164 TAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKG 225 (352)
T ss_pred hHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhC
Confidence 9999999999767999999999999999854 5555554 8999999999999877654
No 48
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=3.1e-47 Score=335.56 Aligned_cols=199 Identities=20% Similarity=0.232 Sum_probs=179.3
Q ss_pred ccCCCceeecccccCCC--------CCeEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 043209 15 LIGNTPMVYLNNIVDGC--------KARIAAKLEMMEP-CSSVKDRIAFSMIKD-----AEEKGLITPGK---------- 70 (221)
Q Consensus 15 ~~~~TPl~~~~~l~~~~--------g~~i~~K~E~~~p-tGs~K~R~a~~~~~~-----a~~~g~~~~g~---------- 70 (221)
++++|||++++++++.+ +.+||+|+|++|| |||||||++.+++.. +++.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 89999999999998744 5799999999999 999999999999864 67888877663
Q ss_pred ------eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCC
Q 043209 71 ------TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPT 144 (221)
Q Consensus 71 ------~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~ 144 (221)
.+||++|+||||.|+|++|+.+|++|+||||++++..|++.++.+||+|+.++.+ |+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~--~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESD--YGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999999999999999999999985 89999999999988766
Q ss_pred eeecCCCCCCccHHHHHhhHHHHHHHhhCC--------CCCEEEEccCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCcc
Q 043209 145 SFNPHQFKNPANPKTHYETTGPEIWEGTRG--------QVDIFVSGIGTGGTVSGVGNFLKKK-NPEIKVYGVEPAESAI 215 (221)
Q Consensus 145 ~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~p~G~Gg~~~Gi~~~~~~~-~~~~kvigVe~~~s~~ 215 (221)
.+|+++ .|+.++.+||.|++.||++|+++ .||+|++|+|+||+++|++.+||+. +|++|||+|||+++++
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 788887 45556667999999999999953 4779999999999999999999997 8999999999999987
Q ss_pred C
Q 043209 216 L 216 (221)
Q Consensus 216 ~ 216 (221)
+
T Consensus 304 ~ 304 (431)
T TIGR02035 304 M 304 (431)
T ss_pred H
Confidence 5
No 49
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4.1e-47 Score=327.14 Aligned_cols=186 Identities=23% Similarity=0.269 Sum_probs=168.1
Q ss_pred HhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAA 90 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~ 90 (221)
.++.++|+|||++.+ +||+|+|++|||||||||++.+++..+.++|. +.|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 478999999999964 69999999999999999999999999999873 46999999999999999999
Q ss_pred HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHH
Q 043209 91 AKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWE 170 (221)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 170 (221)
.+|++|+||||++++..|+++++.+||+|+.++.+ ++++.+. +++. +.+|+++++||++++ |++|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~ie-G~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQFRD-GIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999875 6665443 4444 778999999999997 89999999999
Q ss_pred hhCC-CCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccCC
Q 043209 171 GTRG-QVDIFVSGIGTGGTVSGVGNFLKKKNP------EIKVYGVEPAESAILN 217 (221)
Q Consensus 171 q~~~-~~d~vv~p~G~Gg~~~Gi~~~~~~~~~------~~kvigVe~~~s~~~~ 217 (221)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|||+|||++++++.
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~ 243 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLC 243 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHH
Confidence 9964 599999999999999999999999864 4899999999987764
No 50
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=2.6e-47 Score=327.71 Aligned_cols=198 Identities=26% Similarity=0.305 Sum_probs=182.9
Q ss_pred HHhhcccCCCceeecccccCCCC-CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHH
Q 043209 10 NDITELIGNTPMVYLNNIVDGCK-ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACF 88 (221)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~ 88 (221)
+++...+++|||+++++|++..+ .+||+|+|++|||||||||++.+++.++.++| .++||++|+||||.|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG-----VKAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcC-----CCEEEEeCCCHHHHHHHHH
Confidence 45888999999999999988776 79999999999999999999999999999887 3469999999999999999
Q ss_pred HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHH
Q 043209 89 AAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEI 168 (221)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (221)
|+.+|++|++|+|.+.+..+++.++.+||+|+.++.+ ++++.+.+++++++. ++|++|++|+.+++ ||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~--~~~~~~~~n~~~~~-g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN--FDDALRLVRELAEEN--WIYLSNSLNPYRLE-GQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECCc--HHHHHHHHHHHHHhc--CeeccCCCCcceec-chhhhHHHH
Confidence 9999999999999999999999999999999999874 889999999998876 78999999999997 999999999
Q ss_pred HHhhCC-CCCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccCC
Q 043209 169 WEGTRG-QVDIFVSGIGTGGTVSGVGNFLKKKN------PEIKVYGVEPAESAILN 217 (221)
Q Consensus 169 ~~q~~~-~~d~vv~p~G~Gg~~~Gi~~~~~~~~------~~~kvigVe~~~s~~~~ 217 (221)
++|+++ .+|+||+|+|+||+++|++.+|+..+ |+++||+|||++++++.
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~ 219 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIV 219 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHH
Confidence 999964 69999999999999999999999875 58999999999987663
No 51
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=5.3e-47 Score=337.67 Aligned_cols=194 Identities=22% Similarity=0.260 Sum_probs=179.6
Q ss_pred hhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 043209 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAA 91 (221)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~ 91 (221)
++..+++|||++++ +++.+|.+||+|+|++|||||||||++.+++.++++.| .++|+++|+||+|.|+|++|+.
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g-----~~~vv~aSsGN~g~alA~~aa~ 133 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYA-----ANGFIVASDGNAAASVAAYSAR 133 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcC-----CCEEEEeCCChHHHHHHHHHHH
Confidence 67899999999984 77678889999999999999999999999999999887 4569999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHh
Q 043209 92 KGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEG 171 (221)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (221)
+|++|+||||.+++..|+++++.+||+|+.++.+ ++++.+.+++++++. ++|++++++||++++ |++|+++||++|
T Consensus 134 ~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-~~~~~~~~~np~~~e-G~~t~a~Ei~eq 209 (442)
T PRK05638 134 AGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGES--VDEAIEYAEELARLN-GLYNVTPEYNIIGLE-GQKTIAFELWEE 209 (442)
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECCC--HHHHHHHHHHHHHhC-CeEecCCCCChhHhh-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999864 899999999998876 899999999999997 999999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccCC
Q 043209 172 TRGQVDIFVSGIGTGGTVSGVGNFLKKKNP------EIKVYGVEPAESAILN 217 (221)
Q Consensus 172 ~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~------~~kvigVe~~~s~~~~ 217 (221)
++ ||+||+|+|+||+++|++.+|+++.+ .+|||+|||++++++.
T Consensus 210 ~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~ 259 (442)
T PRK05638 210 IN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIA 259 (442)
T ss_pred HC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHH
Confidence 94 99999999999999999999999865 3799999999987764
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=4.7e-47 Score=333.98 Aligned_cols=196 Identities=24% Similarity=0.268 Sum_probs=181.1
Q ss_pred HhhcccCCCceeecccccCCCCC-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCKA-RIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
.++..+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.+++++|. ++||++|+||+|.|+|++|
T Consensus 60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~a 134 (397)
T PRK06260 60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYA 134 (397)
T ss_pred cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 57889999999999999888886 99999999999999999999999999999883 4699999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHH
Q 043209 90 AAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEI 168 (221)
Q Consensus 90 ~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (221)
+.+|++|+||+|.. .+..|+.+++.+||+|+.++.+ ++++.+.+++++++. ++|+++++ |+++++ ||.|+++||
T Consensus 135 a~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-g~y~~~~~-np~~~~-G~~t~a~Ei 209 (397)
T PRK06260 135 ARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDGN--FDDALDMVVELAKEG-KIYLLNSI-NPFRLE-GQKTIGFEI 209 (397)
T ss_pred HHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECCc--HHHHHHHHHHHHhhC-CEEeecCC-Cchhhc-chhhHHHHH
Confidence 99999999999997 7899999999999999999875 889999999998886 78888887 899987 899999999
Q ss_pred HHhhCC-CCCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccC
Q 043209 169 WEGTRG-QVDIFVSGIGTGGTVSGVGNFLKKKN------PEIKVYGVEPAESAIL 216 (221)
Q Consensus 169 ~~q~~~-~~d~vv~p~G~Gg~~~Gi~~~~~~~~------~~~kvigVe~~~s~~~ 216 (221)
++|+++ .||+||+|+|+||+++|++.+|+++. +.+|||+|||++++++
T Consensus 210 ~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~ 264 (397)
T PRK06260 210 ADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPI 264 (397)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHH
Confidence 999976 69999999999999999999999876 3479999999999876
No 53
>PLN02569 threonine synthase
Probab=100.00 E-value=1.5e-46 Score=335.79 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=182.0
Q ss_pred hhcccCCCceeecccccCC-CC-CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 12 ITELIGNTPMVYLNNIVDG-CK-ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~-~g-~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
++..+|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++|
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 7889999999999999887 78 489999999999999999999999999988764221124599999999999999999
Q ss_pred HHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHH
Q 043209 90 AAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEI 168 (221)
Q Consensus 90 ~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei 168 (221)
+.+|++|+||+|++ .+..|+.+++.+||+|+.++++ |+++++.+++++++. ++|+++++ |+++++ ||+|+++||
T Consensus 207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~--~d~a~~~a~e~~~~~-~~~~~n~~-Np~~ie-G~kT~a~EI 281 (484)
T PLN02569 207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTD--FDGCMRLIREVTAEL-PIYLANSL-NSLRLE-GQKTAAIEI 281 (484)
T ss_pred HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEecCCC-CcchhH-hHHHHHHHH
Confidence 99999999999996 7889999999999999999985 999999999998887 68899987 999997 999999999
Q ss_pred HHhhCCC-CCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccCC
Q 043209 169 WEGTRGQ-VDIFVSGIGTGGTVSGVGNFLKKKN------PEIKVYGVEPAESAILN 217 (221)
Q Consensus 169 ~~q~~~~-~d~vv~p~G~Gg~~~Gi~~~~~~~~------~~~kvigVe~~~s~~~~ 217 (221)
++|++++ ||+||+|+|+||+++|++++|+++. +.+|||+|||++++++.
T Consensus 282 ~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~ 337 (484)
T PLN02569 282 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLY 337 (484)
T ss_pred HHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHH
Confidence 9999765 9999999999999999999999873 56899999999998775
No 54
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.7e-45 Score=304.62 Aligned_cols=187 Identities=41% Similarity=0.586 Sum_probs=175.7
Q ss_pred CceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEE
Q 043209 19 TPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLIL 98 (221)
Q Consensus 19 TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~i 98 (221)
|||++++++++..+.+||+|+|++|||||||||++.+++..++++|.+ ++ ..|+++|+||+|.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999998855 33 4599999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCC-CCC
Q 043209 99 VMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRG-QVD 177 (221)
Q Consensus 99 vvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~-~~d 177 (221)
|+|...+..+++.++.+|++|+.++.+ ++++.+++++++++.++++|+++++|+.+++ |+.++++||.+|++. .+|
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~-g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANIA-GQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHHH-HHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999986 8899999999999856899999999999997 888999999999976 599
Q ss_pred EEEEccCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 043209 178 IFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEP 210 (221)
Q Consensus 178 ~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~ 210 (221)
+||+|+|+||+++|++.+|++.+|.+|||+|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 999999999999999999999999999999998
No 55
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.1e-45 Score=319.98 Aligned_cols=189 Identities=21% Similarity=0.235 Sum_probs=173.7
Q ss_pred hhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 043209 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAA 91 (221)
Q Consensus 12 ~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~ 91 (221)
++..+|.|||+++. .+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+|+|++|+.
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 67889999999873 489999999999999999999999999999884 569999999999999999999
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHh
Q 043209 92 KGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEG 171 (221)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 171 (221)
+|++|+||||.+++..|+.+++.+||+|+.++.+ ++++.+.+++++++. +.+|++++.||.+++ |++|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~~e-G~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYFLE-GTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchhhc-cchhHHHHHHHH
Confidence 9999999999999999999999999999999875 677888888888876 778899999999997 899999999999
Q ss_pred hCCCCCEEEEccCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccCC
Q 043209 172 TRGQVDIFVSGIGTGGTVSGVGNFLKKKN------PEIKVYGVEPAESAILN 217 (221)
Q Consensus 172 ~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~------~~~kvigVe~~~s~~~~ 217 (221)
++ .||+||+|+|+||+++|++++|+++. +.+|||+|||++++++.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~ 252 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLC 252 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHH
Confidence 95 79999999999999999999999873 56899999999987764
No 56
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.9e-45 Score=323.27 Aligned_cols=210 Identities=21% Similarity=0.184 Sum_probs=181.2
Q ss_pred cccchhHHh--hcccCCCceeecccccCCCC-CeEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCC-C----------
Q 043209 4 EKCAIANDI--TELIGNTPMVYLNNIVDGCK-ARIAAKLEMM-EPCSSVKDRIAFSMIKDAEE--KGL-I---------- 66 (221)
Q Consensus 4 ~~~~~~~~~--~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~-~ptGs~K~R~a~~~~~~a~~--~g~-~---------- 66 (221)
++..+..++ ....++|||+++++|++.+| ++||+|+|++ |||||||+|++.+.+..+.. .+. +
T Consensus 28 ~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~ 107 (399)
T PRK08206 28 EAKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTS 107 (399)
T ss_pred HHHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhh
Confidence 344566777 56899999999999999899 6999999998 59999999999988877653 221 0
Q ss_pred ------CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHh
Q 043209 67 ------TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLN 140 (221)
Q Consensus 67 ------~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~ 140 (221)
.++ .+|+++|+||||+|+|++|+.+|++|+||||.+++..|+..++.+||+|+.++.+ ++++.+.++++++
T Consensus 108 ~~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~--~~~~~~~a~~~~~ 184 (399)
T PRK08206 108 GEVREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGN--YDDSVRLAAQEAQ 184 (399)
T ss_pred hHHHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHH
Confidence 011 2499999999999999999999999999999999999999999999999999974 8899999999988
Q ss_pred hCCCeeecC-----CCCC-CccHHHHHhhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcC--CCcEEEEEe
Q 043209 141 KIPTSFNPH-----QFKN-PANPKTHYETTGPEIWEGTRG---QVDIFVSGIGTGGTVSGVGNFLKKKN--PEIKVYGVE 209 (221)
Q Consensus 141 ~~~~~~~~~-----~~~n-~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~p~G~Gg~~~Gi~~~~~~~~--~~~kvigVe 209 (221)
+. +++|++ +|+| +.++..||.|+++||++|+++ .||+||+|+|+||+++|++.+|++.+ +.+|||+||
T Consensus 185 ~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Ve 263 (399)
T PRK08206 185 EN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVE 263 (399)
T ss_pred Hc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEEC
Confidence 87 788886 6765 555556999999999999965 59999999999999999999999984 579999999
Q ss_pred CCCCccCC
Q 043209 210 PAESAILN 217 (221)
Q Consensus 210 ~~~s~~~~ 217 (221)
|+++++|.
T Consensus 264 p~gs~~l~ 271 (399)
T PRK08206 264 PDQADCLY 271 (399)
T ss_pred CCCCchHH
Confidence 99998874
No 57
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2e-44 Score=287.91 Aligned_cols=205 Identities=23% Similarity=0.324 Sum_probs=190.6
Q ss_pred CccccchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChH
Q 043209 2 GSEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNT 81 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~ 81 (221)
++++..+++++.+++..||.+.++.+-+..|..+|+|.|++|-+|+||.|+|.+-+..+.++.+ .+.|++.|||||
T Consensus 9 ~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNH 84 (323)
T KOG1251|consen 9 YEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNH 84 (323)
T ss_pred HHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcH
Confidence 3567789999999999999999999988899999999999999999999999999998874433 456999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHH
Q 043209 82 GIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHY 161 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 161 (221)
+.|+|++|+..|++++||||.+++..|+..++.||++|+++++. .+++...++++.++. +.+.++||++|..+. |+
T Consensus 85 aqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vIa-Gq 160 (323)
T KOG1251|consen 85 AQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVIA-GQ 160 (323)
T ss_pred HHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcceee-cc
Confidence 99999999999999999999999999999999999999999986 578999999999998 889999999999984 99
Q ss_pred hhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 043209 162 ETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAI 215 (221)
Q Consensus 162 ~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~ 215 (221)
+|++.|+++|. +.+|++|+|+|+||+++|++.+.+...|+++|++|||++++.
T Consensus 161 gTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d 213 (323)
T KOG1251|consen 161 GTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADD 213 (323)
T ss_pred chHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccch
Confidence 99999999999 589999999999999999999999999999999999988753
No 58
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=5.1e-44 Score=307.80 Aligned_cols=203 Identities=21% Similarity=0.238 Sum_probs=177.5
Q ss_pred cccchhHHhhcccCCCceeecccccCCCCC-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHH
Q 043209 4 EKCAIANDITELIGNTPMVYLNNIVDGCKA-RIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTG 82 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~ 82 (221)
++.+.-+.+...+++|||++++++++.+|. +||+|+|++|||||||||++.+++.++.++| ..+||++|+||||
T Consensus 9 p~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g-----~~~vv~aSsGN~g 83 (328)
T TIGR00260 9 PVTPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELG-----NDTVLCASTGNTG 83 (328)
T ss_pred CCCChhhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcC-----CCEEEEeCCcHHH
Confidence 333334457788899999999999888886 9999999999999999999999999999887 3469999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCC--CccHHH
Q 043209 83 IGMACFAAAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKN--PANPKT 159 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n--~~~~~~ 159 (221)
.|+|++|+.+|++|+||+|+. .+..|++.++.+||+|+.++.+ ++++.+.+++++++. +.+++++ .| +.+++
T Consensus 84 ~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~--~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~~~- 158 (328)
T TIGR00260 84 AAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGN--FDDAQRLVKQLFGDK-EALGLNS-VNSIPYRLE- 158 (328)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCC--HHHHHHHHHHHHhhc-Ceeeccc-CCCCCeEee-
Confidence 999999999999999999998 8999999999999999999874 889999999998876 4555554 45 88886
Q ss_pred HHhhHHHHHHHhhCC-CCCEEEEccCchhHHHHHHHHHHhcCC-----CcEEEEEeCCCCccC
Q 043209 160 HYETTGPEIWEGTRG-QVDIFVSGIGTGGTVSGVGNFLKKKNP-----EIKVYGVEPAESAIL 216 (221)
Q Consensus 160 g~~t~~~Ei~~q~~~-~~d~vv~p~G~Gg~~~Gi~~~~~~~~~-----~~kvigVe~~~s~~~ 216 (221)
||.|+++||++|+++ .+|+||+|+|+||+++|++.+|++... .+++++|||++++++
T Consensus 159 g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~ 221 (328)
T TIGR00260 159 GQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADI 221 (328)
T ss_pred eehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChH
Confidence 889999999999974 799999999999999999999998510 239999999999655
No 59
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=3.1e-43 Score=306.67 Aligned_cols=206 Identities=20% Similarity=0.201 Sum_probs=176.0
Q ss_pred chhHHhhcccCCCceeecccccCCCC-CeEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------CCCCC
Q 043209 7 AIANDITELIGNTPMVYLNNIVDGCK-ARIAAKLEMMEP-CSSVKDRIAFSMIKDAEEK----------------GLITP 68 (221)
Q Consensus 7 ~~~~~~~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~p-tGs~K~R~a~~~~~~a~~~----------------g~~~~ 68 (221)
..+.++. ...+|||++++.|++.+| .+||+|+|++|+ +||||+|++.+.+..+.++ +.+.+
T Consensus 12 ~~~~~~~-~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (376)
T TIGR01747 12 AFHKKIP-GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGE 90 (376)
T ss_pred HHHHhCC-CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHh
Confidence 3455554 448999999999999999 599999999985 8999999999999887542 11111
Q ss_pred --CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCee
Q 043209 69 --GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSF 146 (221)
Q Consensus 69 --g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~ 146 (221)
+..+||++|+||||+|+|++|+.+|++|+||||++++..|+..++.+||+|+.++.+ ++++.+.+++++++. +++
T Consensus 91 ~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~--~~~a~~~a~~~~~~~-g~~ 167 (376)
T TIGR01747 91 KMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMN--YDDTVRLAMQMAQQH-GWV 167 (376)
T ss_pred hcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CcE
Confidence 235699999999999999999999999999999999999999999999999999875 889999999998886 688
Q ss_pred ecC-----CCCC--CccHHHHHhhHHHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCC--CcEEEEEeCCCC
Q 043209 147 NPH-----QFKN--PANPKTHYETTGPEIWEGTRG----QVDIFVSGIGTGGTVSGVGNFLKKKNP--EIKVYGVEPAES 213 (221)
Q Consensus 147 ~~~-----~~~n--~~~~~~g~~t~~~Ei~~q~~~----~~d~vv~p~G~Gg~~~Gi~~~~~~~~~--~~kvigVe~~~s 213 (221)
+++ +|+| ++.+ .||.|++.||++|++. .||+||+|+|+||+++|++.++++..+ .++||+|||+++
T Consensus 168 ~~~~~~~~~~~~~~~~ii-~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga 246 (376)
T TIGR01747 168 VVQDTAWEGYEKIPTWIM-QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKA 246 (376)
T ss_pred EeccccccccccCCchHH-HHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCC
Confidence 876 4655 5555 4999999999999962 699999999999999999999987653 379999999999
Q ss_pred ccCC
Q 043209 214 AILN 217 (221)
Q Consensus 214 ~~~~ 217 (221)
+++.
T Consensus 247 ~~~~ 250 (376)
T TIGR01747 247 DCLY 250 (376)
T ss_pred CHHH
Confidence 9885
No 60
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=286.68 Aligned_cols=206 Identities=39% Similarity=0.633 Sum_probs=184.6
Q ss_pred hhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 043209 8 IANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMAC 87 (221)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~ 87 (221)
+...+...+|+|||++++.|++..||+|+.|.|.+||.||.|||.|+++++.|++.|++.+|. .|++.|+||+|.++|.
T Consensus 39 ~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~ 117 (391)
T KOG1481|consen 39 IVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAH 117 (391)
T ss_pred ccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHH
Confidence 444678899999999999999999999999999999999999999999999999999999995 4999999999999999
Q ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHhhCC------CeeecCCCCCCccHHH
Q 043209 88 FAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM--GIDEEFRIVEELLNKIP------TSFNPHQFKNPANPKT 159 (221)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~n~~~~~~ 159 (221)
.|+.+|++|+|+||++.+.+|.+.++.+||+|..|++.. +.+.-.+.|++.+.+.+ ..+|.+||+|++||.+
T Consensus 118 v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~a 197 (391)
T KOG1481|consen 118 VARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLA 197 (391)
T ss_pred hhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHH
Confidence 999999999999999999999999999999999987642 22233444555444432 2367899999999999
Q ss_pred HHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCC-cEEEEEeCCCCc
Q 043209 160 HYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPE-IKVYGVEPAESA 214 (221)
Q Consensus 160 g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~-~kvigVe~~~s~ 214 (221)
||.++|+||+.|.++++|++++.+|||||++|+++++|+..+. ++++.++|.||.
T Consensus 198 HyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSG 253 (391)
T KOG1481|consen 198 HYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSG 253 (391)
T ss_pred HhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCc
Confidence 9999999999999999999999999999999999999998876 999999999984
No 61
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.6e-42 Score=301.95 Aligned_cols=204 Identities=21% Similarity=0.230 Sum_probs=168.5
Q ss_pred hhcccC-CCceeecccccCCC-CCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 12 ITELIG-NTPMVYLNNIVDGC-KARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 12 ~~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
..++.+ +|||+++++|++.+ +++||+|+|++|||||||+|.+...+..+++.|+ ...|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 345565 79999999999988 5899999999999999999999999999999884 44566789999999999999
Q ss_pred HHcCCeEEEEecCCCCH---HHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHhhCCCeeecC-CC----CCCccHHH
Q 043209 90 AAKGYKLILVMPAFMSL---EKRIILQAYGAQLILTNA-EMGIDEEFRIVEE-LLNKIPTSFNPH-QF----KNPANPKT 159 (221)
Q Consensus 90 ~~~g~~~~ivvp~~~~~---~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~~-~~----~n~~~~~~ 159 (221)
+.+|++|+||||+.... .++..|+.+||+|+.|+. ..+++++.+.+.+ +.++.++.+|+. +. ..|.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999985333 567899999999999985 3358888888744 555534566653 22 12345556
Q ss_pred HHhhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC--------CccCCCCC
Q 043209 160 HYETTGPEIWEGTR----GQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE--------SAILNGGK 220 (221)
Q Consensus 160 g~~t~~~Ei~~q~~----~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~--------s~~~~~~~ 220 (221)
|+++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.+ ++++..|.
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~ 282 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGK 282 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCC
Confidence 99999999999973 3699999999999999999999986 5899999999999 77776653
No 62
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=4.8e-42 Score=302.39 Aligned_cols=201 Identities=20% Similarity=0.250 Sum_probs=165.9
Q ss_pred HhhcccCCCceeecccccCCCC--CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEE-eeCCChHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCK--ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLI-ECTSGNTGIGMAC 87 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv-~assGN~~~alA~ 87 (221)
.+.....+|||+++++|++.+| ++||+|+|++|||||||+|++..++.++.++|. .. ++ ++|+||||.|+|+
T Consensus 61 ~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~-~vtetssGN~G~alA~ 135 (419)
T TIGR01415 61 RYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KR-LVTETGAGQWGSALSL 135 (419)
T ss_pred HHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----Ce-EEEecCchHHHHHHHH
Confidence 3333436899999999998877 689999999999999999999999999999985 34 55 4688999999999
Q ss_pred HHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCCCChhH------------------HHHHHHHHHhhCC-Ce
Q 043209 88 FAAAKGYKLILVMPAFM---SLEKRIILQAYGAQLILTNAEMGIDE------------------EFRIVEELLNKIP-TS 145 (221)
Q Consensus 88 ~a~~~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~~~~~~~------------------~~~~a~~~~~~~~-~~ 145 (221)
+|+.+|++|+||||+.. +..++..|+.+||+|+.++.+ +++ ++..+.+.+++.+ ..
T Consensus 136 aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~ 213 (419)
T TIGR01415 136 AGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTK 213 (419)
T ss_pred HHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCE
Confidence 99999999999999853 567889999999999999875 332 2456666665543 45
Q ss_pred eecCCCCCCccHHHHHhhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhc----CCCcEEEEEeCCCCccCCC
Q 043209 146 FNPHQFKNPANPKTHYETTGPEIWEGTRG---QVDIFVSGIGTGGTVSGVGNFLKKK----NPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 146 ~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~p~G~Gg~~~Gi~~~~~~~----~~~~kvigVe~~~s~~~~~ 218 (221)
|+++++.|+ ...|+.++|.||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||+|||++|++++.
T Consensus 214 y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~ 291 (419)
T TIGR01415 214 YSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTR 291 (419)
T ss_pred EEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhc
Confidence 666676663 345999999999999964 4999999999999999999988432 2689999999999999987
Q ss_pred CC
Q 043209 219 GK 220 (221)
Q Consensus 219 ~~ 220 (221)
|.
T Consensus 292 g~ 293 (419)
T TIGR01415 292 GE 293 (419)
T ss_pred Cc
Confidence 63
No 63
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.6e-42 Score=304.10 Aligned_cols=201 Identities=20% Similarity=0.166 Sum_probs=171.0
Q ss_pred cccCCCceeecccccCCCC-CeEEEEeCCCC-CCCchhhHHHHHHHHHHHH--cCCC--------------C--CCCeEE
Q 043209 14 ELIGNTPMVYLNNIVDGCK-ARIAAKLEMME-PCSSVKDRIAFSMIKDAEE--KGLI--------------T--PGKTVL 73 (221)
Q Consensus 14 ~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~-ptGs~K~R~a~~~~~~a~~--~g~~--------------~--~g~~~v 73 (221)
..+.+|||++++.|++.+| .+||+|+|++| ||||||+|++.+.+..+.+ .|.. . ....+|
T Consensus 37 ~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 37 PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 4568899999999999899 69999999998 4999999999999987533 2210 0 002269
Q ss_pred EeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecC----
Q 043209 74 IECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPH---- 149 (221)
Q Consensus 74 v~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 149 (221)
|++|+||||+|+|++|+.+|++|+||||.+++..|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++
T Consensus 117 v~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~--~~~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLN--YDDAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CcEeeccccc
Confidence 9999999999999999999999999999999999999999999999999874 889999999998886 788885
Q ss_pred -CCCC--CccHHHHHhhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhc-CCC-cEEEEEeCCCCccCCC
Q 043209 150 -QFKN--PANPKTHYETTGPEIWEGTR----GQVDIFVSGIGTGGTVSGVGNFLKKK-NPE-IKVYGVEPAESAILNG 218 (221)
Q Consensus 150 -~~~n--~~~~~~g~~t~~~Ei~~q~~----~~~d~vv~p~G~Gg~~~Gi~~~~~~~-~~~-~kvigVe~~~s~~~~~ 218 (221)
+|+| +..+ .||.|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. +|||+|||+++++|..
T Consensus 194 ~~~~~~~~~~i-~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~ 270 (396)
T TIGR03528 194 EGYEKIPTWIM-QGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYR 270 (396)
T ss_pred cccccCchHHH-HHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHH
Confidence 5665 3334 599999999999996 26999999999999999999999654 344 5999999999998853
No 64
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.7e-42 Score=297.35 Aligned_cols=202 Identities=23% Similarity=0.213 Sum_probs=172.1
Q ss_pred hHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CChHHHH
Q 043209 9 ANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPC--SSVKDRIAFSMIKDAEEKGLITPGKTVLIECT--SGNTGIG 84 (221)
Q Consensus 9 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--Gs~K~R~a~~~~~~a~~~g~~~~g~~~vv~as--sGN~~~a 84 (221)
++++...+++|||++++.|++..|.+||+|+|++||+ ||||||++.+++.+++++|. ++||++| +||||.|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHH
Confidence 4567889999999999999887889999999999997 59999999999999998884 4588775 4899999
Q ss_pred HHHHHHHcCCeEEEEecCCCCH--------HHHHHHHHcCCEEEEeCCCCChhH-HHHHHHHHHhhCCCe-eecCCCCCC
Q 043209 85 MACFAAAKGYKLILVMPAFMSL--------EKRIILQAYGAQLILTNAEMGIDE-EFRIVEELLNKIPTS-FNPHQFKNP 154 (221)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~--------~~~~~l~~~Ga~V~~v~~~~~~~~-~~~~a~~~~~~~~~~-~~~~~~~n~ 154 (221)
+|++|+.+|++|++|||...+. .++..++.+||+|+.++.+.+..+ +...++++.++.+.. ++..++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998764 456889999999999987533323 455666666654333 345678899
Q ss_pred ccHHHHHhhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 155 ANPKTHYETTGPEIWEGTRG---QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 155 ~~~~~g~~t~~~Ei~~q~~~---~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
.+.+ |+.+++.||++|++. +||+||+|+|||||++|++.+|++.+|+++||||||++++.+
T Consensus 161 ~~~~-g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~ 224 (331)
T PRK03910 161 LGAL-GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAE 224 (331)
T ss_pred hhHH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 9987 889999999999963 699999999999999999999999999999999999998654
No 65
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=4.9e-42 Score=293.50 Aligned_cols=192 Identities=24% Similarity=0.202 Sum_probs=163.2
Q ss_pred ccCCCceeecccccCCCCCeEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHH
Q 043209 15 LIGNTPMVYLNNIVDGCKARIAAKLEMMEPC--SSVKDRIAFSMIKDAEEKGLITPGKTVLIEC--TSGNTGIGMACFAA 90 (221)
Q Consensus 15 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--Gs~K~R~a~~~~~~a~~~g~~~~g~~~vv~a--ssGN~~~alA~~a~ 90 (221)
...+|||+++++|++..|.+||+|+|++||+ ||||||++.+++.+++++|. ++||++ |+||||.|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 3468999999999888889999999999998 99999999999999999984 568888 55999999999999
Q ss_pred HcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHh----hCC-CeeecCCCCCCccHHHHHhhH
Q 043209 91 AKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLN----KIP-TSFNPHQFKNPANPKTHYETT 164 (221)
Q Consensus 91 ~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~n~~~~~~g~~t~ 164 (221)
.+|+++++|||... +..+...++.+||+|+.++.. +++++.+.++++++ +.+ ..++++++.|+.+.+ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999864 455677789999999999863 25555555555443 222 245668888999887 66789
Q ss_pred HHHHHHhhCC--CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 043209 165 GPEIWEGTRG--QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAES 213 (221)
Q Consensus 165 ~~Ei~~q~~~--~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s 213 (221)
++||++|++. ++|+||+|+|||||++|++.+||+.+|+++||||||+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~ 207 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRF 207 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 9999999964 799999999999999999999999999999999998765
No 66
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=7.6e-42 Score=298.57 Aligned_cols=196 Identities=17% Similarity=0.238 Sum_probs=161.4
Q ss_pred hcccC-CCceeecccccCCC-CCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 043209 13 TELIG-NTPMVYLNNIVDGC-KARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAA 90 (221)
Q Consensus 13 ~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~ 90 (221)
.++.| +|||+++++|++.+ +++||+|+|++|||||||+|.+...+..+++.|+ +..|+++|+||||.|+|++|+
T Consensus 52 ~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa 127 (397)
T PRK04346 52 KNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAA 127 (397)
T ss_pred HHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHH
Confidence 45566 59999999999988 5899999999999999999999999999999885 455666899999999999999
Q ss_pred HcCCeEEEEecCC-CC--HHHHHHHHHcCCEEEEeCC-CCChhHHHHHHHH-HHhhCCCeeec-CCCCC----CccHHHH
Q 043209 91 AKGYKLILVMPAF-MS--LEKRIILQAYGAQLILTNA-EMGIDEEFRIVEE-LLNKIPTSFNP-HQFKN----PANPKTH 160 (221)
Q Consensus 91 ~~g~~~~ivvp~~-~~--~~~~~~l~~~Ga~V~~v~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~n----~~~~~~g 160 (221)
++|++|+||||+. .+ ..++..|+.+||+|+.|+. ..+++++.+.+.+ +.++.++.+|+ ++..+ |.++..|
T Consensus 128 ~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~ 207 (397)
T PRK04346 128 LLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDF 207 (397)
T ss_pred HcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHh
Confidence 9999999999985 33 3577889999999999985 3356666655544 55553354554 33322 3444569
Q ss_pred HhhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 043209 161 YETTGPEIWEGTR----GQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAES 213 (221)
Q Consensus 161 ~~t~~~Ei~~q~~----~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s 213 (221)
|++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||||||.++
T Consensus 208 q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~ 263 (397)
T PRK04346 208 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGK 263 (397)
T ss_pred cchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCC
Confidence 9999999999984 3699999999999999999999976 89999999999986
No 67
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.6e-41 Score=299.45 Aligned_cols=204 Identities=21% Similarity=0.255 Sum_probs=166.0
Q ss_pred HHhhcccCCCceeecccccCCCC--CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHHHH
Q 043209 10 NDITELIGNTPMVYLNNIVDGCK--ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIE-CTSGNTGIGMA 86 (221)
Q Consensus 10 ~~~~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~-assGN~~~alA 86 (221)
..++...++|||+++++|++.+| .+||+|+|++||+||||+|++..++..+.++|. .. +++ +|+||+|.|+|
T Consensus 69 ~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~-~vtetgsGN~G~alA 143 (427)
T PRK12391 69 REIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KR-LTTETGAGQWGSALA 143 (427)
T ss_pred HHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CE-EEEccCchHHHHHHH
Confidence 33456778999999999998877 689999999999999999999999999999985 33 555 67899999999
Q ss_pred HHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHhhCCCeee
Q 043209 87 CFAAAKGYKLILVMPAF---MSLEKRIILQAYGAQLILTNAEMG----------------IDEEFRIVEELLNKIPTSFN 147 (221)
Q Consensus 87 ~~a~~~g~~~~ivvp~~---~~~~~~~~l~~~Ga~V~~v~~~~~----------------~~~~~~~a~~~~~~~~~~~~ 147 (221)
++|+.+|++|+||||+. .++.++..|+.+||+|+.++.+.+ ...++..+.+.+++.++.+|
T Consensus 144 ~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y 223 (427)
T PRK12391 144 LACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKY 223 (427)
T ss_pred HHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEE
Confidence 99999999999999974 356789999999999999976411 11145666677666545445
Q ss_pred cCCCCCCccHHHHHhhHHHHHHHhhC---CCCCEEEEccCchhHHHHHHHHHHh---cC-CCcEEEEEeCCCCccCCCC
Q 043209 148 PHQFKNPANPKTHYETTGPEIWEGTR---GQVDIFVSGIGTGGTVSGVGNFLKK---KN-PEIKVYGVEPAESAILNGG 219 (221)
Q Consensus 148 ~~~~~n~~~~~~g~~t~~~Ei~~q~~---~~~d~vv~p~G~Gg~~~Gi~~~~~~---~~-~~~kvigVe~~~s~~~~~~ 219 (221)
...+.+. +...||.++|.||.+|+. ..||+||+|+|+||+++|++.+|.+ .+ +++|||+|||++|++|+.|
T Consensus 224 ~~~s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g 301 (427)
T PRK12391 224 ALGSVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKG 301 (427)
T ss_pred EcCCCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccc
Confidence 4333222 344599999999999995 3699999999999999999987733 34 8899999999999999765
No 68
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.2e-41 Score=297.79 Aligned_cols=198 Identities=18% Similarity=0.272 Sum_probs=160.8
Q ss_pred HhhcccC-CCceeecccccCCC------CCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHH
Q 043209 11 DITELIG-NTPMVYLNNIVDGC------KARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGI 83 (221)
Q Consensus 11 ~~~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~ 83 (221)
.+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..+++.|+ +..|+++|+||||.
T Consensus 58 ~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~ 133 (410)
T PLN02618 58 ILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGV 133 (410)
T ss_pred HHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHH
Confidence 3567786 89999999999876 4899999999999999999999999998888874 34455667899999
Q ss_pred HHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCC-CCChhHHHH-HHHHHHhhCCCeeec-CCCC--CC-
Q 043209 84 GMACFAAAKGYKLILVMPAFM---SLEKRIILQAYGAQLILTNA-EMGIDEEFR-IVEELLNKIPTSFNP-HQFK--NP- 154 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~-~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--n~- 154 (221)
|+|++|+.+|++|+||||... ...|+..|+.+||+|+.|+. +.+++++.. .+++++++.++.+|+ .+.. +|
T Consensus 134 AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~ 213 (410)
T PLN02618 134 ATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 213 (410)
T ss_pred HHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC
Confidence 999999999999999999853 34567799999999999954 345778774 445677664455555 2221 22
Q ss_pred -ccHHHHHhhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 043209 155 -ANPKTHYETTGPEIWEGT----RGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAES 213 (221)
Q Consensus 155 -~~~~~g~~t~~~Ei~~q~----~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s 213 (221)
.....++.++|.||.+|+ +..||+||+|+|+||+++|++.+|+. +|++|||||||+++
T Consensus 214 ~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 214 PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 233358999999997776 34699999999999999999999975 79999999999997
No 69
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.2e-41 Score=298.25 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=160.5
Q ss_pred hccc-CCCceeecccccCCCC-CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHH
Q 043209 13 TELI-GNTPMVYLNNIVDGCK-ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAA 90 (221)
Q Consensus 13 ~~~~-~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~ 90 (221)
..+. .+|||+++++|++.+| .+||+|+|++|||||||||.+..++..+++.|. ...|+++|+||||+|+|++|+
T Consensus 44 ~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~ 119 (385)
T TIGR00263 44 RNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAAA 119 (385)
T ss_pred HHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHH
Confidence 3344 4899999999998887 799999999999999999999999999988874 344557999999999999999
Q ss_pred HcCCeEEEEecCC-CCH--HHHHHHHHcCCEEEEeCCC-CChhHHH-HHHHHHHhhCCCeeec-CCCCC----CccHHHH
Q 043209 91 AKGYKLILVMPAF-MSL--EKRIILQAYGAQLILTNAE-MGIDEEF-RIVEELLNKIPTSFNP-HQFKN----PANPKTH 160 (221)
Q Consensus 91 ~~g~~~~ivvp~~-~~~--~~~~~l~~~Ga~V~~v~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~n----~~~~~~g 160 (221)
.+|++|+||||+. .+. .+++.++.+||+|+.++.. ..++++. ..++++.++.++.+|+ +++.| +.++..|
T Consensus 120 ~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~ 199 (385)
T TIGR00263 120 LLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDF 199 (385)
T ss_pred HcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHH
Confidence 9999999999985 333 5788899999999999753 3466664 4445556654455555 44442 2455569
Q ss_pred HhhHHHHHHHhhC----CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 043209 161 YETTGPEIWEGTR----GQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAES 213 (221)
Q Consensus 161 ~~t~~~Ei~~q~~----~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s 213 (221)
++|++.||++|+. ..||+||+|+|+||+++|++.+|.+ .|++|||||||+++
T Consensus 200 ~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs 255 (385)
T TIGR00263 200 QSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGL 255 (385)
T ss_pred hhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCC
Confidence 9999999999983 2589999999999999999998865 69999999999996
No 70
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.7e-41 Score=309.56 Aligned_cols=201 Identities=17% Similarity=0.226 Sum_probs=169.9
Q ss_pred hhcccC-CCceeecccccCC----CC--CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 043209 12 ITELIG-NTPMVYLNNIVDG----CK--ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIG 84 (221)
Q Consensus 12 ~~~~~~-~TPl~~~~~l~~~----~g--~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~a 84 (221)
..+++| +|||+++++|++. +| .+||+|+|++|||||||||.+.+++..+++.|+ .+.|+++|+||||.|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 356788 9999999988753 44 799999999999999999999999999999986 456889999999999
Q ss_pred HHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHH-HHHHhhCC-CeeecCCCCCC----
Q 043209 85 MACFAAAKGYKLILVMPAF---MSLEKRIILQAYGAQLILTNAE-MGIDEEFRIV-EELLNKIP-TSFNPHQFKNP---- 154 (221)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~---~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~n~---- 154 (221)
+|++|+++|++|+||||.. .+..|+..|+.+||+|+.++.. .+++++.+.+ +++.++.+ ..|+++++.|+
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 3678999999999999999843 2567776555 55666533 45778888654
Q ss_pred ccHHHHHhhHHHHHHHhhCC-----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 155 ANPKTHYETTGPEIWEGTRG-----QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 155 ~~~~~g~~t~~~Ei~~q~~~-----~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
.++..|+.++|.||++|+.. .||+||+|+|+||+++|++.+|+. .|++|||||||.++....
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~ 541 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPES 541 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccc
Confidence 34557999999999999952 699999999999999999999966 789999999999975443
No 71
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=3.1e-41 Score=293.98 Aligned_cols=196 Identities=17% Similarity=0.194 Sum_probs=160.3
Q ss_pred CCCceeecccccCCC-CCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCChHHHHHHHHHHHcCC
Q 043209 17 GNTPMVYLNNIVDGC-KARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIE-CTSGNTGIGMACFAAAKGY 94 (221)
Q Consensus 17 ~~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~-assGN~~~alA~~a~~~g~ 94 (221)
.+|||+++++|++.+ +.+||+|+|++|||||||||.+..++..+.++|. .. +|+ +|+||||+|+|++|+.+|+
T Consensus 33 ~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~-vv~~~ssGN~g~alA~~a~~~G~ 107 (365)
T cd06446 33 RPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KR-VIAETGAGQHGVATATACALFGL 107 (365)
T ss_pred CCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----Ce-EEEecCchHHHHHHHHHHHHhCC
Confidence 589999999998877 5899999999999999999999999999998884 33 555 6899999999999999999
Q ss_pred eEEEEecCCCC---HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHH-HhhC-CCeeecCCC----CCCccHHHHHhhH
Q 043209 95 KLILVMPAFMS---LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEEL-LNKI-PTSFNPHQF----KNPANPKTHYETT 164 (221)
Q Consensus 95 ~~~ivvp~~~~---~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~----~n~~~~~~g~~t~ 164 (221)
+|+||+|...+ ..++..++.+||+|+.++.. ..+++++..+.+. .++. ..+|+++++ .++.++.+|+.|+
T Consensus 108 ~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~ 187 (365)
T cd06446 108 ECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVI 187 (365)
T ss_pred CeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHH
Confidence 99999998633 35778899999999999864 2356665444443 4432 234444433 2234567799999
Q ss_pred HHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCCC
Q 043209 165 GPEIWEGTRG----QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218 (221)
Q Consensus 165 ~~Ei~~q~~~----~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~~ 218 (221)
++||++|++. .||+||+|+|+||+++|++.++++ .+++|||||||++++.+.+
T Consensus 188 ~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~ 244 (365)
T cd06446 188 GEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETG 244 (365)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccc
Confidence 9999999962 699999999999999999999887 5689999999999988864
No 72
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=5.4e-42 Score=291.87 Aligned_cols=194 Identities=37% Similarity=0.504 Sum_probs=163.8
Q ss_pred hhcccCCCceeecc--cccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 12 ITELIGNTPMVYLN--NIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 12 ~~~~~~~TPl~~~~--~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
|+.++++|||++++ .+++..+.+||+|+|++|||||||||++.+++.++++++ .+.|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~-----~~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKG-----GRTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTT-----TSEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccc-----cceeeeeccCCceehhhhhh
Confidence 46789999999964 555667799999999999999999999999999999886 45699999999999999999
Q ss_pred HHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhh-------CCCeeecCCCCCCccHHHHHh
Q 043209 90 AAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNK-------IPTSFNPHQFKNPANPKTHYE 162 (221)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~n~~~~~~g~~ 162 (221)
+.+|++|++|+|++.+..+++.++.+|++|+.++.. ++++.+.+++++++ .++. +++++|+ +...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQYNNP-NVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTTTSH-HHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcccch-hhhhhhh
Confidence 999999999999999999999999999999998774 44444444444332 1122 6677444 4446999
Q ss_pred hHHHHHHHhhCCCCCE--EEEccCchhHHHHHHHHHHh--cCCCcEEEEEeCCCCccCC
Q 043209 163 TTGPEIWEGTRGQVDI--FVSGIGTGGTVSGVGNFLKK--KNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~--vv~p~G~Gg~~~Gi~~~~~~--~~~~~kvigVe~~~s~~~~ 217 (221)
+++.||++|++ .||. ||+|+|+||+++|++.+++. . |.+|||+|||.+++++.
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~ 207 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLY 207 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHH
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCcccc
Confidence 99999999996 6665 99999999999999999999 7 89999999999987764
No 73
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=3e-41 Score=288.17 Aligned_cols=192 Identities=24% Similarity=0.260 Sum_probs=160.5
Q ss_pred CceeecccccCCC--CCeEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCChHHHHHHHHHHH
Q 043209 19 TPMVYLNNIVDGC--KARIAAKLEMMEPC---SSVKDRIAFSMIKDAEEKGLITPGKTVLIEC--TSGNTGIGMACFAAA 91 (221)
Q Consensus 19 TPl~~~~~l~~~~--g~~i~~K~E~~~pt---Gs~K~R~a~~~~~~a~~~g~~~~g~~~vv~a--ssGN~~~alA~~a~~ 91 (221)
|||+++++|++.+ +.+||+|+|++||+ ||||||++.+++.+++++|. ++||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999998 57799999999999999884 458888 579999999999999
Q ss_pred cCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hhHHHHHH-HHHHhhCCCeee-cCCC-CCCccHH
Q 043209 92 KGYKLILVMPAFMS--------LEKRIILQAYGAQLILTNAEMG--IDEEFRIV-EELLNKIPTSFN-PHQF-KNPANPK 158 (221)
Q Consensus 92 ~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~~~~~--~~~~~~~a-~~~~~~~~~~~~-~~~~-~n~~~~~ 158 (221)
+|++|++|||.+.+ ..|++.++.+||+|+.++.+.+ ..++...+ +.+.++.+..++ .+++ +|+.+++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 99999999999766 3688899999999999987521 12223333 333333323344 4555 4999997
Q ss_pred HHHhhHHHHHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 159 THYETTGPEIWEGTRG---QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 159 ~g~~t~~~Ei~~q~~~---~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
||.+++.||++|++. .||+||+|+|||||++|++.+|++.+|++|||+|||++++.+
T Consensus 156 -G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~ 215 (307)
T cd06449 156 -GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEK 215 (307)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHH
Confidence 899999999999964 699999999999999999999999999999999999998765
No 74
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=6.9e-41 Score=289.21 Aligned_cols=203 Identities=19% Similarity=0.167 Sum_probs=169.3
Q ss_pred hhHHhhcccCCCceeecccccCCCCC--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCCh
Q 043209 8 IANDITELIGNTPMVYLNNIVDGCKA--RIAAKLEMMEPC---SSVKDRIAFSMIKDAEEKGLITPGKTVLIEC--TSGN 80 (221)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~g~--~i~~K~E~~~pt---Gs~K~R~a~~~~~~a~~~g~~~~g~~~vv~a--ssGN 80 (221)
-++++...+++|||++++++++.+|. +||+|+|++||+ ||||||.+.+++.+++++|. ++|+++ |+||
T Consensus 4 ~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN 78 (337)
T TIGR01274 4 RFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSN 78 (337)
T ss_pred cCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcch
Confidence 35677888999999999999988774 999999999976 78899999999999999984 557876 6699
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHhhC-CCeeecC
Q 043209 81 TGIGMACFAAAKGYKLILVMPAFMS--------LEKRIILQAYGAQLILTNAEM--GIDEEFRIVEELLNKI-PTSFNPH 149 (221)
Q Consensus 81 ~~~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~-~~~~~~~ 149 (221)
||+|+|++|+.+|++|+||+|+..+ ..|+..++.+||+|+.++... +..++...+.+..++. +..++++
T Consensus 79 ~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~ 158 (337)
T TIGR01274 79 QTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIP 158 (337)
T ss_pred HHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeC
Confidence 9999999999999999999998542 578999999999999998641 1235555555555554 2346665
Q ss_pred CCC--CCccHHHHHhhHHHHHHHhh---CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 150 QFK--NPANPKTHYETTGPEIWEGT---RGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 150 ~~~--n~~~~~~g~~t~~~Ei~~q~---~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
.+. |+.... |+.++++||.+|+ +.+||+||+|+|||||++|++.+|++.+|++|||||||++++.+
T Consensus 159 ~~~~~~~~~~~-G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~ 229 (337)
T TIGR01274 159 AGCSDHPLGGL-GFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQ 229 (337)
T ss_pred CCCCCCccchh-HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 553 466665 8899999999995 34799999999999999999999999999999999999999765
No 75
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=7.9e-41 Score=288.88 Aligned_cols=204 Identities=18% Similarity=0.153 Sum_probs=168.7
Q ss_pred hhHHhhcccCCCceeecccccCCCC--CeEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCCh
Q 043209 8 IANDITELIGNTPMVYLNNIVDGCK--ARIAAKLEMMEPC---SSVKDRIAFSMIKDAEEKGLITPGKTVLIEC--TSGN 80 (221)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~pt---Gs~K~R~a~~~~~~a~~~g~~~~g~~~vv~a--ssGN 80 (221)
-++++...+++|||++++++++..| .+||+|+|++||+ ||+|||.+.+++.+++++|. .+|+++ |+||
T Consensus 5 ~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN 79 (337)
T PRK12390 5 KFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSN 79 (337)
T ss_pred CCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccH
Confidence 3557788899999999999888777 7999999999987 78899999999999999984 557877 7799
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHhhCCCeee-cC
Q 043209 81 TGIGMACFAAAKGYKLILVMPAFMS--------LEKRIILQAYGAQLILTNAEM--GIDEEFRIVEELLNKIPTSFN-PH 149 (221)
Q Consensus 81 ~~~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~-~~ 149 (221)
||+|+|++|+.+|++|++|+|...+ ..++..++.+||+|+.++.+. .+.++.+.+.+..++..+..| ++
T Consensus 80 ~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (337)
T PRK12390 80 HTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIP 159 (337)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeC
Confidence 9999999999999999999876543 236778999999999998741 233666667666666434344 55
Q ss_pred CCCC--CccHHHHHhhHHHHHHHh---hCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccCC
Q 043209 150 QFKN--PANPKTHYETTGPEIWEG---TRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217 (221)
Q Consensus 150 ~~~n--~~~~~~g~~t~~~Ei~~q---~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~~ 217 (221)
.+.+ +...+ |+.++++||++| ++.++|+||+|+|||||++|++.+|++.+|++|||||||++++.+.
T Consensus 160 ~~~~~~~~~~~-G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~ 231 (337)
T PRK12390 160 AGASDHPLGGL-GFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQT 231 (337)
T ss_pred CcCCCCCcccH-HHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHH
Confidence 5433 44444 889999999998 4447999999999999999999999999999999999999987764
No 76
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=7.5e-41 Score=288.03 Aligned_cols=201 Identities=21% Similarity=0.230 Sum_probs=168.2
Q ss_pred cchhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--eeCCChH
Q 043209 6 CAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPC--SSVKDRIAFSMIKDAEEKGLITPGKTVLI--ECTSGNT 81 (221)
Q Consensus 6 ~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--Gs~K~R~a~~~~~~a~~~g~~~~g~~~vv--~assGN~ 81 (221)
+..++++.+.+++|||++++++++..|++||+|+|++||+ ||||+|++.+++.+++++|. .+|+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 4456789999999999999999888889999999999996 89999999999999999884 3466 5899999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCCCC---hhHHHHHHHHHHhhCCCeee-cCCCCCCcc
Q 043209 82 GIGMACFAAAKGYKLILVMPAFMSLE-KRIILQAYGAQLILTNAEMG---IDEEFRIVEELLNKIPTSFN-PHQFKNPAN 156 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~-~~~~l~~~Ga~V~~v~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~n~~~ 156 (221)
++|+|++|+.+|++|++|+|...+.. +...++.+||+++.++...+ .+.+.+.++++.++.+..++ .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999865433 56677999999998874322 23556666676666544555 466789988
Q ss_pred HHHHHhhHHHHHHHhhC---CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 157 PKTHYETTGPEIWEGTR---GQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 157 ~~~g~~t~~~Ei~~q~~---~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
.. |+.+...||++|++ .++|+||+|+|||||++|++.+++..+|++|||||+|.+
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 87 55555559999996 379999999999999999999999999999999999976
No 77
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=8.3e-41 Score=293.20 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=167.8
Q ss_pred hcccCCCceeecccccCCCCC-eEEEEeCC-------CCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHH
Q 043209 13 TELIGNTPMVYLNNIVDGCKA-RIAAKLEM-------MEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIG 84 (221)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~-------~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~a 84 (221)
....+.|||+++++|++.+|. ++|+|+|. +|||||||||++.+++..+.+.| .+.|+++|+||||.|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g-----~~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERG-----GKTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcC-----CCEEEEECCCHHHHH
Confidence 346677999999999998997 99995554 89999999999999999999887 456999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhH
Q 043209 85 MACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETT 164 (221)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (221)
+|++|+.+|++|+||||.+.+..+....+.+|++|+.++++ |+++.+.+++++++. +++..++++|++.++ |++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~--~d~a~~~a~~~a~~~-g~~~~~~~~~p~~ie-G~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGD--YTDAIALADRIATLP-GFVPEGGARNVARRD-GMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCC--HHHHHHHHHHHHHhC-CccccCCCCCHHHHh-hHHHH
Confidence 99999999999999999975433333347899999999875 899999999998876 665556678898886 99999
Q ss_pred HHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC-------CCcEEEEEeCCCCccCC
Q 043209 165 GPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKN-------PEIKVYGVEPAESAILN 217 (221)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~-------~~~kvigVe~~~s~~~~ 217 (221)
++||++|++..||+||+|+|+|.++.|++.+++++. .-+|+++|||+++++|.
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 999999996449999999999999999999998842 34789999999998774
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.2e-39 Score=297.55 Aligned_cols=196 Identities=20% Similarity=0.224 Sum_probs=161.1
Q ss_pred hcccC-CCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 043209 13 TELIG-NTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAA 91 (221)
Q Consensus 13 ~~~~~-~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~ 91 (221)
..+.+ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+++.|. ...|+++|+||||+|+|++|+.
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL 340 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence 34454 799999999998889999999999999999999999999999988884 4446678999999999999999
Q ss_pred cCCeEEEEecCCC---CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHH-HHHHhhCCCeeecCCCC---C--CccHHHHH
Q 043209 92 KGYKLILVMPAFM---SLEKRIILQAYGAQLILTNAE-MGIDEEFRIV-EELLNKIPTSFNPHQFK---N--PANPKTHY 161 (221)
Q Consensus 92 ~g~~~~ivvp~~~---~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---n--~~~~~~g~ 161 (221)
+|++|+||||... ...++..|+.+||+|+.++.. .++.++.+.+ +++..+.++.+|+.++. + |.++..|+
T Consensus 341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 9999999999863 356788999999999999852 3466665444 44434444666664432 2 34444589
Q ss_pred hhHHHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 043209 162 ETTGPEIWEGTRG----QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAES 213 (221)
Q Consensus 162 ~t~~~Ei~~q~~~----~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s 213 (221)
++++.||.+|+.. .||+||+|+|+||+++|++.+|+. .|++|||||||.++
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 9999999999842 599999999999999999999964 78999999999985
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-35 Score=254.78 Aligned_cols=198 Identities=24% Similarity=0.256 Sum_probs=179.7
Q ss_pred HhhcccCCCceeecccccCCCCC---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHH
Q 043209 11 DITELIGNTPMVYLNNIVDGCKA---RIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMAC 87 (221)
Q Consensus 11 ~~~~~~~~TPl~~~~~l~~~~g~---~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~ 87 (221)
......+.||+++.+++...++. ++|+|.|.+|||||||||++..++..+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 45778889999999888887773 59999999999999999999999999999883 45999999999999999
Q ss_pred HHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHH
Q 043209 88 FAAAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGP 166 (221)
Q Consensus 88 ~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~ 166 (221)
++.+.|++|+|++|.+ ++..|+.++..+|++++.++++ ||+|++.+++++++. ++++....-||..++ |+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~~~~~~nsiNp~rle-gq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-GLLSAVNSINPYRLE-GQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-CceeeccccCHHHhh-hhhhhHh
Confidence 9999999999999998 9999999999999999999997 999999999999976 567787788999997 9999999
Q ss_pred HHHHhhC-CCCCEEEEccCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccCC
Q 043209 167 EIWEGTR-GQVDIFVSGIGTGGTVSGVGNFLKKKNP------EIKVYGVEPAESAILN 217 (221)
Q Consensus 167 Ei~~q~~-~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~------~~kvigVe~~~s~~~~ 217 (221)
||++|+. ..||+|++|+|+||++.|++.+|++..| .+++.+||+++..++.
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~ 277 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGV 277 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchh
Confidence 9999997 3799999999999999999999999764 3788999999977654
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=209.38 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=160.0
Q ss_pred hcccCC-CceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHH
Q 043209 13 TELIGN-TPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAA 91 (221)
Q Consensus 13 ~~~~~~-TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~ 91 (221)
.++.|+ |||+..++|++.+|++||+||||+|+||+||...+...+..|++.|+ ++.|.+.+.|.||.|.|.+|++
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~ 125 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAAL 125 (396)
T ss_pred HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHH
Confidence 345554 99999999999999999999999999999999999999999999997 6777788889999999999999
Q ss_pred cCCeEEEEecC-CC--CHHHHHHHHHcCCEEEEeC-CCCChhHHHHHH-HHHHhhCCCeeecCCC---CC--CccHHHHH
Q 043209 92 KGYKLILVMPA-FM--SLEKRIILQAYGAQLILTN-AEMGIDEEFRIV-EELLNKIPTSFNPHQF---KN--PANPKTHY 161 (221)
Q Consensus 92 ~g~~~~ivvp~-~~--~~~~~~~l~~~Ga~V~~v~-~~~~~~~~~~~a-~~~~~~~~~~~~~~~~---~n--~~~~~~g~ 161 (221)
+|++|+|||-. ++ ...++..|+.+||+|+.|. ++.+..|+.+.| +.+.......+|+-.. -+ |....--+
T Consensus 126 fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ 205 (396)
T COG0133 126 FGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ 205 (396)
T ss_pred hCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHH
Confidence 99999999965 33 4456788999999999986 445677888777 4455555556665332 12 33344467
Q ss_pred hhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 162 ETTGPEIWEGT----RGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 162 ~t~~~Ei~~q~----~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
+.++.|.-+|+ +.-||+||.|+|+|+++.|++..|.. .+++++||||+.|
T Consensus 206 ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG 259 (396)
T COG0133 206 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAG 259 (396)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCc
Confidence 88999988876 34599999999999999999888875 4789999999987
No 81
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=203.15 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=166.5
Q ss_pred hhHHhhcccCCCceeecccccCCCCCeEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCC--ChHHH
Q 043209 8 IANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEP--CSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTS--GNTGI 83 (221)
Q Consensus 8 ~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~p--tGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~ass--GN~~~ 83 (221)
-|+|+.....+||+.+++++++++|.+||+||||+.+ .|.+|.|..++++.+|+++| .+++|+.++ +||.+
T Consensus 5 rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g-----~dTlvT~GgiQSNh~r 79 (323)
T COG2515 5 RFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKG-----ADTLVTYGGIQSNHVR 79 (323)
T ss_pred cCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcC-----CcEEEEecccchhHHH
Confidence 4778888899999999999999999999999999965 68999999999999999998 567999988 99999
Q ss_pred HHHHHHHHcCCeEEEEecCCC----CHHHHHHHHHcCCEEEEeCCCCCh--hHH-HHHHHHHHhhCCCeeecCCC-CCCc
Q 043209 84 GMACFAAAKGYKLILVMPAFM----SLEKRIILQAYGAQLILTNAEMGI--DEE-FRIVEELLNKIPTSFNPHQF-KNPA 155 (221)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~----~~~~~~~l~~~Ga~V~~v~~~~~~--~~~-~~~a~~~~~~~~~~~~~~~~-~n~~ 155 (221)
++|++|+++|++|+.++.... ...++...+.+|+++..++...++ +.. ...++++.++....|.++.. .||.
T Consensus 80 ~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~ 159 (323)
T COG2515 80 QTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPL 159 (323)
T ss_pred HHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCcc
Confidence 999999999999999996643 234666778899999999987555 322 33344444443234444444 4665
Q ss_pred cHHHHHhhHHHHHHHhhC--CCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc
Q 043209 156 NPKTHYETTGPEIWEGTR--GQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214 (221)
Q Consensus 156 ~~~~g~~t~~~Ei~~q~~--~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~ 214 (221)
.-. ||...+.||.+|.. -++|+|||++|||||.+|++.++...+|+++|||+.....+
T Consensus 160 g~l-Gyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~ 219 (323)
T COG2515 160 GAL-GYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADP 219 (323)
T ss_pred ccc-cHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCH
Confidence 554 99999999999986 57999999999999999999999999999999999887754
No 82
>PRK09225 threonine synthase; Validated
Probab=99.93 E-value=7.8e-25 Score=194.84 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=144.6
Q ss_pred CCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEeeCCChHHHHH-HHHHHHcC
Q 043209 18 NTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFS---MIKDAEEKGLITPGKTVLIECTSGNTGIGM-ACFAAAKG 93 (221)
Q Consensus 18 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~---~~~~a~~~g~~~~g~~~vv~assGN~~~al-A~~a~~~g 93 (221)
.+||.+++ .++|+.--.++||||||||++.. ++..+.+ +. ...|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887763 15888777788999999999988 7888877 42 5669999999999998 68888899
Q ss_pred CeEEEEecCC-CCHHHHHHHHHc-CCEEEEeCCCCChhHHHHHHHHHHhhC-----CCeeecCCCCCCccHHHHHhhHHH
Q 043209 94 YKLILVMPAF-MSLEKRIILQAY-GAQLILTNAEMGIDEEFRIVEELLNKI-----PTSFNPHQFKNPANPKTHYETTGP 166 (221)
Q Consensus 94 ~~~~ivvp~~-~~~~~~~~l~~~-Ga~V~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~~~ 166 (221)
++|+|++|+. ++..++++|..+ |++|+.+.-+++|++|++.++++.++. -+++-.+. -|+..++ ++.++++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRLL-AQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHHH-HHHHHHH
Confidence 9999999996 899999999999 998844433335999999999987662 13444444 4888887 9999999
Q ss_pred HHHHhhCC---CCCEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEe
Q 043209 167 EIWEGTRG---QVDIFVSGIGTGGTVSGVGNFLKKKN-PEIKVYGVE 209 (221)
Q Consensus 167 Ei~~q~~~---~~d~vv~p~G~Gg~~~Gi~~~~~~~~-~~~kvigVe 209 (221)
|+++|+.+ .+|.|+||+|+||.+.|.+.+ ++++ |-.|+|+++
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~ 279 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT 279 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe
Confidence 99999964 389999999999999999998 4444 767999998
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.93 E-value=3.4e-24 Score=190.79 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=147.4
Q ss_pred CCceeecccccCCCCCeEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEeeCCChHHHH-HHHHHHHcC
Q 043209 18 NTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSM---IKDAEEKGLITPGKTVLIECTSGNTGIG-MACFAAAKG 93 (221)
Q Consensus 18 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGs~K~R~a~~~---~~~a~~~g~~~~g~~~vv~assGN~~~a-lA~~a~~~g 93 (221)
-+||.++. .++|++...++||||||||++..+ +..+.++. .+...|+++||||+|.| ++.++...|
T Consensus 87 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~g 156 (460)
T cd01560 87 IAPLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPN 156 (460)
T ss_pred ccceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37777754 268999999999999999999876 66666541 12567999999999999 488888899
Q ss_pred CeEEEEecCC-CCHHHHHHHHHcCC---EEEEeCCCCChhHHHHHHHHHHhhC-----CCeeecCCCCCCccHHHHHhhH
Q 043209 94 YKLILVMPAF-MSLEKRIILQAYGA---QLILTNAEMGIDEEFRIVEELLNKI-----PTSFNPHQFKNPANPKTHYETT 164 (221)
Q Consensus 94 ~~~~ivvp~~-~~~~~~~~l~~~Ga---~V~~v~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~~g~~t~ 164 (221)
++|+|++|.. ++..+..+|..+|+ +++.|+++ |++|++.++++.++. -+++-.+. -|+..++ ++.+.
T Consensus 157 i~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~--fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~-~Q~~y 232 (460)
T cd01560 157 VDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGD--FDDCQSLVKALFADEDFNKKLKLSSANS-INWARIL-AQIVY 232 (460)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCC--HHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHHH-HHHHH
Confidence 9999999996 89999999999996 77788775 999999999887652 13333443 4788886 99999
Q ss_pred HHHHHHhhCC----CCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 165 GPEIWEGTRG----QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 165 ~~Ei~~q~~~----~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
++|+++|+.. .+|.|+||+|+||.+.|.+.+.+.-.|-.|+|+++.++
T Consensus 233 yf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 233 YFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred HHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 9999999963 58999999999999999999966544777999976544
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.93 E-value=7.5e-25 Score=182.00 Aligned_cols=201 Identities=22% Similarity=0.252 Sum_probs=155.1
Q ss_pred hccc-CCCceeecccccCCCC--CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHH
Q 043209 13 TELI-GNTPMVYLNNIVDGCK--ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFA 89 (221)
Q Consensus 13 ~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a 89 (221)
+..+ .+|||++..+|.+.++ ++||.|.|+..||||||...|....-.+...|. ++.+.+.+.|.+|.|++.+|
T Consensus 72 Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~ 147 (432)
T COG1350 72 YLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAA 147 (432)
T ss_pred HHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHH
Confidence 3344 6899999999998877 799999999999999999999999999999985 55445556699999999999
Q ss_pred HHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hhHHHHHHHHHHhhCCCeeec-C
Q 043209 90 AAKGYKLILVMPAF---MSLEKRIILQAYGAQLILTNAEMG----------------IDEEFRIVEELLNKIPTSFNP-H 149 (221)
Q Consensus 90 ~~~g~~~~ivvp~~---~~~~~~~~l~~~Ga~V~~v~~~~~----------------~~~~~~~a~~~~~~~~~~~~~-~ 149 (221)
+.+|++|+|||-.. ..+.+.-.|+.|||+|+..+.+.+ .--++..|-+.+-++++..|. .
T Consensus 148 alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lG 227 (432)
T COG1350 148 ALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLG 227 (432)
T ss_pred HHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecch
Confidence 99999999999653 345677889999999998765311 111455555555555433343 2
Q ss_pred CCCCCccHHHHHhhHHHHHHHhh---CCCCCEEEEccCchhHHHHHHHHHHhc---C-CCcEEEEEeCCCCccCCCC
Q 043209 150 QFKNPANPKTHYETTGPEIWEGT---RGQVDIFVSGIGTGGTVSGVGNFLKKK---N-PEIKVYGVEPAESAILNGG 219 (221)
Q Consensus 150 ~~~n~~~~~~g~~t~~~Ei~~q~---~~~~d~vv~p~G~Gg~~~Gi~~~~~~~---~-~~~kvigVe~~~s~~~~~~ 219 (221)
.--|. ...|+..+|.|..+|+ +..||++|-|+|+|++++|+..-|-.. + ...++|+|||..+|.|.-|
T Consensus 228 SVlnh--vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~G 302 (432)
T COG1350 228 SVLNH--VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKG 302 (432)
T ss_pred hHHHH--HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccc
Confidence 22232 2248899999996665 567999999999999999997776442 2 2389999999999999866
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.92 E-value=4.8e-25 Score=184.57 Aligned_cols=204 Identities=20% Similarity=0.193 Sum_probs=149.7
Q ss_pred ccchhHHhhccc-CCCceeecccccCCCC--CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChH
Q 043209 5 KCAIANDITELI-GNTPMVYLNNIVDGCK--ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNT 81 (221)
Q Consensus 5 ~~~~~~~~~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~ 81 (221)
++.-+..++.++ .+|||++.++|.+.++ .+||+|+|++||+||+|...+......+.+.|+ +..|.+.+.|.|
T Consensus 108 f~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQh 183 (477)
T KOG1395|consen 108 FWEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQH 183 (477)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCcc
Confidence 344455566444 4599999999988764 799999999999999999999999999999997 676777788999
Q ss_pred HHHHHHHHHHcCCeEEEEecCC---CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHH-hhCCCeeecCCC-C--C
Q 043209 82 GIGMACFAAAKGYKLILVMPAF---MSLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELL-NKIPTSFNPHQF-K--N 153 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~---~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~-~~~~~~~~~~~~-~--n 153 (221)
|.|+|.+|+++|++|+|+|-.. ....++..|+.+||+|+.+... ...+++-..+.++- ....-.+|+-.. . +
T Consensus 184 GvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gph 263 (477)
T KOG1395|consen 184 GVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPH 263 (477)
T ss_pred chHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCC
Confidence 9999999999999999999553 3556788899999999998642 23344433332221 111123333222 1 1
Q ss_pred Cc--cHHHHHhhHHHHHHHhh----CCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 043209 154 PA--NPKTHYETTGPEIWEGT----RGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAES 213 (221)
Q Consensus 154 ~~--~~~~g~~t~~~Ei~~q~----~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s 213 (221)
|+ ....-+.+++.|-..|. +..||.||.|+|+|++.+|++.-|.. ...+++||||..+-
T Consensus 264 p~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagd 328 (477)
T KOG1395|consen 264 PYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGD 328 (477)
T ss_pred CcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeeccc
Confidence 11 12123467777766554 34699999999999999999988875 45688999987763
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.82 E-value=1.9e-19 Score=148.81 Aligned_cols=204 Identities=21% Similarity=0.209 Sum_probs=167.2
Q ss_pred hcccCCCceeeccccc----CCC----CCeEEEEeCCCCC-CCchhhHHHHHHH-HH----HHHcCCCCCC---------
Q 043209 13 TELIGNTPMVYLNNIV----DGC----KARIAAKLEMMEP-CSSVKDRIAFSMI-KD----AEEKGLITPG--------- 69 (221)
Q Consensus 13 ~~~~~~TPl~~~~~l~----~~~----g~~i~~K~E~~~p-tGs~K~R~a~~~~-~~----a~~~g~~~~g--------- 69 (221)
+.++-.+||+..+.+. +++ ..++|+|.|+..| +||.|.|+.-|-+ .+ |++.|.+...
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 3455668888765443 222 3589999999999 8999999765554 33 4566654332
Q ss_pred -------CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhC
Q 043209 70 -------KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 -------~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~ 142 (221)
+..|...|+||.|.++....+.+|+++++-|..++.++|.+.++..|.+|+....+ |..+.+.-++-++..
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~D--Y~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQD--YGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecch--hhHHHHHhhhhhccC
Confidence 12688899999999999999999999999999999999999999999999999875 888999998888888
Q ss_pred CCeeecCCCCCCccHHHHHhhHHHHHHHhhCC--------CCCEEEEccCchhHHHHHHHHHHhcC-CCcEEEEEeCCCC
Q 043209 143 PTSFNPHQFKNPANPKTHYETTGPEIWEGTRG--------QVDIFVSGIGTGGTVSGVGNFLKKKN-PEIKVYGVEPAES 213 (221)
Q Consensus 143 ~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~p~G~Gg~~~Gi~~~~~~~~-~~~kvigVe~~~s 213 (221)
|..||++.-++-.... ||...+..+-.|+.. .|-.|..|+|-||.-.|++.++|... .++.++-+||..|
T Consensus 231 P~c~FiDDE~S~~LFL-GYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPths 309 (443)
T COG3048 231 PNCFFIDDENSRTLFL-GYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309 (443)
T ss_pred CceEEecccchhhhhh-hHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCC
Confidence 8899998765555554 999999999999842 36689999999999999999999876 6799999999999
Q ss_pred ccCCCC
Q 043209 214 AILNGG 219 (221)
Q Consensus 214 ~~~~~~ 219 (221)
|+|.=|
T Consensus 310 PcMlLG 315 (443)
T COG3048 310 PCMLLG 315 (443)
T ss_pred hHHHHh
Confidence 998643
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.43 E-value=0.67 Score=36.19 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCeEE-EEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHH
Q 043209 82 GIGMACFAAAKGYKLI-LVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTH 160 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~-ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 160 (221)
|..+..+++.+|.++- -+-+.+.-..-++.+...+-.|.+++.+ .+...+.++.+.+++|+.-....++-+.... -
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDEE-E 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCChh-h
Confidence 4688899999988773 2222233344566677788899999886 3445556667777777644332222222221 2
Q ss_pred HhhHHHHHHHhhCCCCCEEEEccCchhH
Q 043209 161 YETTGPEIWEGTRGQVDIFVSGIGTGGT 188 (221)
Q Consensus 161 ~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~ 188 (221)
...+..+|.+ ..+|.|+++.|+---
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHH
Confidence 3344444433 358999999998653
No 88
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=92.62 E-value=5.1 Score=35.64 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHcCCCCC-CCeEEEeeCCChHHHH--HHHHHHHcCCeEEEEe
Q 043209 40 EMMEPCSSVKDRIAFSMIKDAEEKGLITP-GKTVLIECTSGNTGIG--MACFAAAKGYKLILVM 100 (221)
Q Consensus 40 E~~~ptGs~K~R~a~~~~~~a~~~g~~~~-g~~~vv~assGN~~~a--lA~~a~~~g~~~~ivv 100 (221)
-+.+|.|+.+ .....+...+++|.+.. ++..+|+..++..|.| +|.+. ..|.+.+++.
T Consensus 13 ~~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 13 TTAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 4567888843 46677788888887744 4666777777767777 45555 5677766654
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=91.42 E-value=2.1 Score=33.32 Aligned_cols=121 Identities=19% Similarity=0.093 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHH
Q 043209 82 GIGMACFAAAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTH 160 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 160 (221)
|..+.++++.++.+..--++.. .-..-++.+...+..|.+++.. -+...+.++.+.++.|+.-.....+-+...+ .
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~-~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE-E 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-h
Confidence 4678889999988733233321 2233455566678999999876 2344445566777777654332222222222 1
Q ss_pred HhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEe
Q 043209 161 YETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVE 209 (221)
Q Consensus 161 ~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe 209 (221)
...+..+|.+ ..||.|+++.|+---= -.....+...+..-+++|-
T Consensus 88 ~~~i~~~I~~---~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG 132 (171)
T cd06533 88 EEEIIERINA---SGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVG 132 (171)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEec
Confidence 1223333322 3599999999986532 2233334434444455543
No 90
>PRK12743 oxidoreductase; Provisional
Probab=90.86 E-value=3.4 Score=33.77 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=37.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|.-|.+++......|.+++++...+.. ....+.++..|.++..+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEE
Confidence 456888888999999999998899987766543322 222345666777666543
No 91
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.77 E-value=5.8 Score=32.22 Aligned_cols=56 Identities=27% Similarity=0.355 Sum_probs=36.6
Q ss_pred HHHHcCCCCCCCeEEEee-CCC---hHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCC
Q 043209 59 DAEEKGLITPGKTVLIEC-TSG---NTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGA 117 (221)
Q Consensus 59 ~a~~~g~~~~g~~~vv~a-ssG---N~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga 117 (221)
.|...|- ..+.+|++ |.| .+..+||.+|++.|=+.++++|+..+ ..-.+.|..+|.
T Consensus 34 SAlAAG~---nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGW---NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhccc---cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 3445553 13345555 444 46899999999999999999999654 344455555553
No 92
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.18 E-value=3.7 Score=35.44 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=44.5
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILT 122 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 122 (221)
...+.+|++.+|.+.+|.-|....-.|+.+|. +++++- .+..+.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~--~s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVV--SSSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEe--cCHHHHHHHHhcCCCEEEc
Confidence 45577788888999999999999999999998 444442 2456666999999977765
No 93
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.13 E-value=8.3 Score=31.00 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=41.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
+|...+|+.|..++.+....+.++++++.+. +....+.++..|++++..+-
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence 5778889999999999988999999998664 55667778889999886543
No 94
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.99 E-value=4.8 Score=29.03 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 82 GIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
|......|+.+|.+.+++. .+..+++.++.+|++.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~---~~~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATD---RSEEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEE---CCHHHHHHHHhhccccccccc
Confidence 4556666777773333333 246677777777766665544
No 95
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=89.46 E-value=4.3 Score=34.64 Aligned_cols=88 Identities=25% Similarity=0.286 Sum_probs=62.6
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-H
Q 043209 34 RIAAKLEMMEP-----CSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL-E 107 (221)
Q Consensus 34 ~i~~K~E~~~p-----tGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~-~ 107 (221)
+-++|.++.-| |-+.---.|+-|+.+..+.. +|...|=-++.+--|.++--.|+.+|++.+-++.+.... +
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 46677777554 44555557888888877543 455433334446678888889999999999999775544 4
Q ss_pred HHHHHHHcCCEEEEeCC
Q 043209 108 KRIILQAYGAQLILTNA 124 (221)
Q Consensus 108 ~~~~l~~~Ga~V~~v~~ 124 (221)
..++|+.+||+-++.+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 56789999999988764
No 96
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.25 E-value=3.6 Score=35.52 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=41.4
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+.++.+.+|. +.|..|...+..++.+|.+++++.+...+..+++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3456664555 57999999999999999976665554457888899999999864
No 97
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.10 E-value=11 Score=30.59 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHH
Q 043209 52 IAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEE 131 (221)
Q Consensus 52 ~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~ 131 (221)
-+.-+.....+.|. ...=|+.++-....++...++.+. ++.|=.-.-.+..+.++....||+.+..++- -.+.
T Consensus 26 ~a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~--~~ev 98 (211)
T COG0800 26 EALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL--NPEV 98 (211)
T ss_pred HHHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC--CHHH
Confidence 34555555666664 333456677778888899999888 6665555556889999999999999988764 1222
Q ss_pred HHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhC---------------CCCCEEEEccCchhHHHHHHHHH
Q 043209 132 FRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTR---------------GQVDIFVSGIGTGGTVSGVGNFL 196 (221)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~---------------~~~d~vv~p~G~Gg~~~Gi~~~~ 196 (221)
. +.+.++ +..+++...+|--+... -..|.++++-++ +-++.-|+|+|+=+. .=+..|+
T Consensus 99 ~----~~a~~~-~ip~~PG~~TptEi~~A-le~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~-~N~~~yl 171 (211)
T COG0800 99 A----KAANRY-GIPYIPGVATPTEIMAA-LELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSL-DNAADYL 171 (211)
T ss_pred H----HHHHhC-CCcccCCCCCHHHHHHH-HHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCH-HHHHHHH
Confidence 3 344444 67788777666544322 234444433321 236788888886443 3444444
Q ss_pred H
Q 043209 197 K 197 (221)
Q Consensus 197 ~ 197 (221)
+
T Consensus 172 a 172 (211)
T COG0800 172 A 172 (211)
T ss_pred h
Confidence 3
No 98
>PRK08226 short chain dehydrogenase; Provisional
Probab=88.93 E-value=7 Score=31.88 Aligned_cols=54 Identities=26% Similarity=0.129 Sum_probs=35.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|..|.+++......|.+++++-.........+.+...|.++..+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVV 60 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEE
Confidence 566888889999999999988889986666433211222334444566655443
No 99
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.90 E-value=8.4 Score=31.39 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=46.0
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhhC
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNKI 142 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 142 (221)
++..+|+.+++.-|.++|......|.+++++-... .....+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 36778999999999999999999999887764322 223344556677776554322 12344444444444443
No 100
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.88 E-value=7 Score=31.57 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=43.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
+..+|+..++.-|.+++......|.+++++-.+... ....+.++..|.+++.+.-+ .+.++..+...+..++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 566888888889999999999999986665433211 12234455667766544321 1334444455555544
No 101
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.52 E-value=5.7 Score=34.22 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=44.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLN 140 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~ 140 (221)
++.+|+..+|-.|.+++......|.+++++..... .....+.++..|+++..+..+ .+.++..+.+.+..+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 56788888899999999999999998766654321 122234566778877654322 123333444444433
No 102
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.39 E-value=9.3 Score=31.01 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=38.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
+..+|+..+|-.|.++|..-...|.+++++..........+.++..|.++..+..
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQV 62 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEc
Confidence 5668888889999999999888999887765433222334555666766655443
No 103
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=88.11 E-value=5.3 Score=31.40 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHH
Q 043209 83 IGMACFAAAKGYKLILVMPA-FMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHY 161 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~-~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~ 161 (221)
..+.++++.+|.+..--++. +.-..-.+.....|..|.+++.. -+...+.++.+.++.|+.-... ++.+...+ -.
T Consensus 14 ~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g-~~g~f~~~-~~ 89 (177)
T TIGR00696 14 IGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVG-AFGPLEPE-ER 89 (177)
T ss_pred HHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEE-ECCCCChH-HH
Confidence 66788899888654322222 11223344556778899999875 3344555666777777643222 11122221 11
Q ss_pred hhHHHHHHHhhCCCCCEEEEccCchh
Q 043209 162 ETTGPEIWEGTRGQVDIFVSGIGTGG 187 (221)
Q Consensus 162 ~t~~~Ei~~q~~~~~d~vv~p~G~Gg 187 (221)
..+..+|.+ ..+|.|+|+.|+=-
T Consensus 90 ~~i~~~I~~---s~~dil~VglG~Pk 112 (177)
T TIGR00696 90 KAALAKIAR---SGAGIVFVGLGCPK 112 (177)
T ss_pred HHHHHHHHH---cCCCEEEEEcCCcH
Confidence 223333333 25899999999743
No 104
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=87.92 E-value=17 Score=33.18 Aligned_cols=122 Identities=13% Similarity=0.127 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCeEEEEe-----------cCCCCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHhhCCCee--
Q 043209 84 GMACFAAAKGYKLILVM-----------PAFMSLEKRIILQAYGAQLILTNAEM----GIDEEFRIVEELLNKIPTSF-- 146 (221)
Q Consensus 84 alA~~a~~~g~~~~ivv-----------p~~~~~~~~~~l~~~Ga~V~~v~~~~----~~~~~~~~a~~~~~~~~~~~-- 146 (221)
.+..+|+..|.++++.. |..+....+......|++.+..+.+. ...++.+...+.+++-...+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 34567888899987754 33445667777788999998886542 12345444444433221111
Q ss_pred ---ecCCCC-C---CccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 147 ---NPHQFK-N---PANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 147 ---~~~~~~-n---~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
|-.+.. . ....+ .....+.++.+.+ +.++||+.+-||.++--+++ ..|.+.|+++.|..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~-~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~ 406 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITE-AIALSAVEAAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNE 406 (473)
T ss_pred hhhhhhhhcccccCCChHH-HHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCH
Confidence 111100 0 01122 3455566777776 47899999999999666554 46888999988754
No 105
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.91 E-value=9.4 Score=32.83 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
....+.++.+.+|. ++|..|.+++.+|+.+|.+.+ ++ +.+..+++.++.+|++.+.
T Consensus 160 ~~~~~~~g~~VlV~-G~G~vG~~a~~~a~~~G~~vi-~~--~~~~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 160 VQAGLKKGDLVIVI-GAGGVGGYMVQTAKAMGAAVV-AI--DIDPEKLEMMKGFGADLTL 215 (349)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEE-EE--cCCHHHHHHHHHhCCceEe
Confidence 33456677764444 459999999999999999643 33 3356778888889986554
No 106
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.86 E-value=8.8 Score=31.12 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=42.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|.-|.+++......|.+++++...... ......++..|.++..+..+ .+.++..+..+++.++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 566888888999999999988889986666533211 11233455566666554332 1233334444444443
No 107
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.62 E-value=10 Score=33.46 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=41.7
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
...+.++.+.+| ..+|..|.+++..|+.+|.+.+++. +.+..+++..+.+|++.+
T Consensus 180 ~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 180 TAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCETV 234 (393)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeEE
Confidence 345667777555 7779999999999999999876644 235678888889999753
No 108
>PRK08643 acetoin reductase; Validated
Probab=87.58 E-value=9.9 Score=30.82 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=34.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL-EKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|..|.+++......|.+++++....... .....++..+.++..+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4668888889999999999888898766654332111 12233444566665543
No 109
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.47 E-value=8.7 Score=32.77 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=53.7
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEe-cCCCCHHHHHHHHHcC-CEEEEeCCCCChhHHHHHHHHHHhhC
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVM-PAFMSLEKRIILQAYG-AQLILTNAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivv-p~~~~~~~~~~l~~~G-a~V~~v~~~~~~~~~~~~a~~~~~~~ 142 (221)
|+..+||.+++-.|+++|.-.+++|-+.+++- -.....+..+.++..| +.-..++-+ +.++..+.+.++.++.
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEV 112 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhc
Confidence 46778888889999999999999998555543 2234566677777777 333455655 4788899999998887
No 110
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.26 E-value=13 Score=31.22 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=42.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILT 122 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 122 (221)
+...+.+|.+.+|...+|..|.++.-.|+.+|.+.+++. .+..+.+.++.+|++-+..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence 345567777766777789999999999999999854443 3456778888899865443
No 111
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=86.30 E-value=16 Score=29.61 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=44.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
+..+|+.++|.-|.+++......|.+++++-. .......+.++..+.++..+..+- +.++..+..++..++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999989998765522 223344555666676665544321 233344444444333
No 112
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.16 E-value=13 Score=30.15 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=34.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|..|.+++......|.+++++...... ......++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 567888889999999999988889986655432111 112334455566665543
No 113
>PRK05866 short chain dehydrogenase; Provisional
Probab=85.97 E-value=12 Score=31.52 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++.+|+..+|..|.+++......|.+++++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 456888888999999999988889887766543
No 114
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.54 E-value=26 Score=32.36 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=41.8
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 68 ~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
++. +|+..+.|..|.+.+..|+.+|-+ ++++ +....++++.+.+|++.+.++.
T Consensus 164 pg~-kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~--D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 164 PPA-KVLVIGAGVAGLAAIGAAGSLGAI-VRAF--DTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred CCC-EEEEECCcHHHHHHHHHHHHCCCE-EEEE--eCCHHHHHHHHHcCCeEEEecc
Confidence 444 489999999999999999999985 3333 4578899999999999765543
No 115
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.36 E-value=18 Score=29.11 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=36.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|..|.+++......|.+++++...+.. ....+.++..|.++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVK 60 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 567888889999999999998899887765433211 122344556666665544
No 116
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.28 E-value=8.9 Score=31.88 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
..++.+ |+..+.|..|..++..|+.+|.+.++++ +.+..+++.++.+|++.+.
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 346666 4445679999999999999999755555 4467888889999996554
No 117
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.23 E-value=17 Score=28.89 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=34.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|..|.+++......|.+++++...... ......++..+.++..+.
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQ 61 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEE
Confidence 466888888999999999988889887666543221 122233444555555543
No 118
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.17 E-value=17 Score=29.13 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=33.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILT 122 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v 122 (221)
++.+|+.++|..|.+++......|.+++++...... ......++..+.++..+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 61 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIA 61 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEE
Confidence 456888888999999999888889876666533211 11223344445555443
No 119
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=85.06 E-value=24 Score=30.43 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=32.5
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC-CcEEEEEeC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNP-EIKVYGVEP 210 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~-~~kvigVe~ 210 (221)
....++++.- +++|.||++ +...+.|+..++++.+. +++|+|+..
T Consensus 198 ~~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 198 QTAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3556666664 689999987 44455678889988763 688898864
No 120
>PRK06194 hypothetical protein; Provisional
Probab=84.85 E-value=18 Score=29.86 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=35.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|.-|.+++......|.+++++-..... ......+...|.++..+..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRT 62 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEEC
Confidence 566888889999999999888889887665432111 2223344445667755543
No 121
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=84.65 E-value=14 Score=32.82 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=70.1
Q ss_pred EeeCCC-hHHHHHHHHHHHcCCeEEEEecC-CC---CH-HHHHHHHHcCC-EEEEeCCCCChhHHHHHHHHHHhhCCCee
Q 043209 74 IECTSG-NTGIGMACFAAAKGYKLILVMPA-FM---SL-EKRIILQAYGA-QLILTNAEMGIDEEFRIVEELLNKIPTSF 146 (221)
Q Consensus 74 v~assG-N~~~alA~~a~~~g~~~~ivvp~-~~---~~-~~~~~l~~~Ga-~V~~v~~~~~~~~~~~~a~~~~~~~~~~~ 146 (221)
+..|+| .+...+.+...+.+.+++.|.-+ .- .. ...+....+|| +++.++....|. .+.+...-+. +..
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NAL 77 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T--
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HHH
Confidence 445555 56667777777777998887633 22 22 23445788999 999887642221 1222222222 233
Q ss_pred ecCCCC---CCccHHHHHhhHHHHHHHhhCCCCCEEEE-ccCchhHHHHHHHHHHhcCCCcEEEE
Q 043209 147 NPHQFK---NPANPKTHYETTGPEIWEGTRGQVDIFVS-GIGTGGTVSGVGNFLKKKNPEIKVYG 207 (221)
Q Consensus 147 ~~~~~~---n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~-p~G~Gg~~~Gi~~~~~~~~~~~kvig 207 (221)
|.+.|- ....+. ......|+.++. ..++|.- ++|.|--..=.-.+++.+.|+.+|++
T Consensus 78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 333331 122222 344556777776 4688887 55889999999999999999999875
No 122
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=84.56 E-value=18 Score=31.29 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=57.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHhhCCCeeec
Q 043209 71 TVLIECTSGNTGIGMACFAAAK-GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMG-IDEEFRIVEELLNKIPTSFNP 148 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~-g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~-~~~~~~~a~~~~~~~~~~~~~ 148 (221)
.+++.+++|..|.-.|..--.. |=++.++.-..-...-.+..+++|++|..|+.+.+ -..-....+.+++..++.+|+
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 4589999998887766554444 44444444443355567888999999999965422 113355666777777899999
Q ss_pred CCCCCCccH
Q 043209 149 HQFKNPANP 157 (221)
Q Consensus 149 ~~~~n~~~~ 157 (221)
-+.++.-..
T Consensus 149 ~hgdsSTgV 157 (385)
T KOG2862|consen 149 THGDSSTGV 157 (385)
T ss_pred EecCccccc
Confidence 888765443
No 123
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.39 E-value=27 Score=33.00 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=42.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
..++.++.|..|+.++..-+..|++.+++ +.+..+.+.++..|.+|+.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 34999999999999999999899987766 33567788888889888776654
No 124
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.11 E-value=19 Score=28.79 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=36.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|..|.+++......|.+++++..... .....+.++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 56688888999999999998888987766654321 1223344555666655443
No 125
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=84.08 E-value=18 Score=29.07 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=35.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEe
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGAQLILT 122 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v 122 (221)
+..+|+.++|..|.++|......|.+.+++..... ....+..++..|.++...
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIAS 58 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEE
Confidence 56688889999999999999889987666543221 112234445566666543
No 126
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=83.87 E-value=13 Score=30.23 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=45.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 142 (221)
++.+|+..+|.-|.+++......|.+++++-.........+.++..|.++..+..+ .+.++..+...+..++.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 56788899999999999999889998776654322223334555667776544322 13444455555554443
No 127
>PRK07791 short chain dehydrogenase; Provisional
Probab=83.79 E-value=21 Score=29.83 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.4
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVM 100 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivv 100 (221)
+++.+|+..++.-|.++|......|.+++++.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~ 37 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVND 37 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEee
Confidence 36778888889999999999888998876654
No 128
>PRK08278 short chain dehydrogenase; Provisional
Probab=83.75 E-value=23 Score=29.18 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=36.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--------LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|-.|.+++......|.+++++...... ....+.++..|.+++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 566888888999999999998899988777644221 111234555666665543
No 129
>PRK05993 short chain dehydrogenase; Provisional
Probab=83.44 E-value=21 Score=29.46 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=45.3
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHh
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLN 140 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~ 140 (221)
++..+|+.++|..|.+++......|.+++++... ..+++.++..+.+++.++-. +.++..+...+..+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~~~ 71 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQVLE 71 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHHHH
Confidence 3566888888999999999988889987766533 44555566667777766654 23344444444433
No 130
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=83.26 E-value=4.1 Score=35.49 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=52.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhhCCCe-eec
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNKIPTS-FNP 148 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~~~~-~~~ 148 (221)
..++..+||..+..+|..+...+-.-.|++|.-+.......+...|+++++++-+ .++.=..+..++...+.... +..
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~ 120 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV 120 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe
Confidence 3488889998888888877443333788999988889999999999999999854 22332223333333332233 344
Q ss_pred CCCCCCccHH
Q 043209 149 HQFKNPANPK 158 (221)
Q Consensus 149 ~~~~n~~~~~ 158 (221)
+.+.++..+.
T Consensus 121 h~~G~~~d~~ 130 (363)
T PF01041_consen 121 HLFGNPADMD 130 (363)
T ss_dssp -GGGB---HH
T ss_pred cCCCCcccHH
Confidence 5556665554
No 131
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.23 E-value=31 Score=32.46 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=40.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
.++.++.|..|+.++..-...|++++++= .++.+.+.++..|.+++.-|..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeCC
Confidence 48999999999999999888999876664 2466777778888887765543
No 132
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=83.13 E-value=18 Score=31.26 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.+.++++.+|. ++|-.|.++...|+.+|.+.++.+ +.+..+++.++.+|++-+.
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEE
Confidence 34556777775655 579999999999999998755554 2356778888889986443
No 133
>PRK08303 short chain dehydrogenase; Provisional
Probab=83.09 E-value=23 Score=30.04 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=43.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-----------CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHH
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-----------SLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEE 137 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-----------~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~ 137 (221)
+..+|+.+++--|.++|......|.+++++..... .....+.++..|.+++.+..+ .+.++..+.+.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 56688888888999999998889998776653311 112233455566665544322 134445555555
Q ss_pred HHhhC
Q 043209 138 LLNKI 142 (221)
Q Consensus 138 ~~~~~ 142 (221)
..+..
T Consensus 89 ~~~~~ 93 (305)
T PRK08303 89 IDREQ 93 (305)
T ss_pred HHHHc
Confidence 54443
No 134
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=83.08 E-value=9.4 Score=25.24 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=38.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-----H----HHHHHHHHcCCEEEE
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-----L----EKRIILQAYGAQLIL 121 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-----~----~~~~~l~~~Ga~V~~ 121 (221)
++.-++|..|.-+|...+.+|.+++++.+.+.. . .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 678899999999999999999999999865421 1 124567778877765
No 135
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=82.59 E-value=9 Score=32.79 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=42.6
Q ss_pred cCCCCCCCeEEEeeCC---ChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCC
Q 043209 63 KGLITPGKTVLIECTS---GNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 63 ~g~~~~g~~~vv~ass---GN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~~ 124 (221)
.|.+ .|.+ |+..+- +|.++|+..+++++|++++++.|+.. +...++.++..|++|...+.
T Consensus 145 ~g~l-~g~~-va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 145 FGRL-DGLK-IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES 209 (301)
T ss_pred hCCC-CCCE-EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence 4543 2344 444444 69999999999999999999999863 54555666677888766543
No 136
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.54 E-value=7.9 Score=33.52 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=52.1
Q ss_pred HHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 043209 58 KDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 58 ~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 123 (221)
-+|-+.+.+++|.+ ++..+.|.-|......|+.+|-+=++++ +....+++..+.+||+++.-.
T Consensus 159 ~HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 159 VHACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeec
Confidence 35566677888865 8999999999999999999999877777 457889999999999998644
No 137
>PRK06181 short chain dehydrogenase; Provisional
Probab=82.54 E-value=21 Score=28.99 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=34.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|..|.+++......|.+++++...... ....+.++..+.++..+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 345888888999999999888889877666543211 122334455566655443
No 138
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=82.51 E-value=26 Score=29.97 Aligned_cols=57 Identities=25% Similarity=0.411 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++.+.+| ...|..|.++...|+.+|.+.++.+.. +..+.+.++.+|++.+.
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 4455677776555 667999999999999999876666543 46777788889986554
No 139
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.30 E-value=12 Score=32.19 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=39.1
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
..++.+.+|. ++|..|.+....|+.+|.+.++++. .+..+++.++.+|++.+.
T Consensus 167 ~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 167 DLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3456665554 5699999999999999986555443 356788888999997654
No 140
>PRK05854 short chain dehydrogenase; Provisional
Probab=82.18 E-value=19 Score=30.53 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=41.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHc--CCEEEE--eCCCCChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAY--GAQLIL--TNAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~--Ga~V~~--v~~~~~~~~~~~~a~~~~~~~ 142 (221)
++.+|+.+++--|.++|..-.+.|.++++....... ...++.++.. +.++.. ++-. +.++..+.+.++.++.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~-d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLS-SLASVAALGEQLRAEG 91 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCC-CHHHHHHHHHHHHHhC
Confidence 567888888889999998888889877666543211 1122333322 344443 3433 3555555666655544
No 141
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=81.84 E-value=16 Score=31.65 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=41.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++.+.+|. ++|..|..++..|+.+|.+.++++ +.+..+++.++.+|++.+.
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEe
Confidence 34456777775664 578999999999999998544444 2356788888889996544
No 142
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=81.76 E-value=24 Score=28.16 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEE
Q 043209 50 DRIAFSMIKDAEEK---GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQ-AYGAQLI 120 (221)
Q Consensus 50 ~R~a~~~~~~a~~~---g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~Ga~V~ 120 (221)
-+++.+.+..+.+. +.--.|+ +++.-+.||.|..+|......|.+++++ . .+..+++.+. .+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk-~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGK-TVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence 35677777776655 2222344 4888888999999999999999987743 2 2344444443 3476543
No 143
>PRK06182 short chain dehydrogenase; Validated
Probab=81.74 E-value=25 Score=28.84 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=46.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
+..+|+.++|..|.+++......|.+++++... ..+++.+...+.+++.++-. +.++..+..+++.++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 566888888999999999988889987776533 34455555567777776654 344444445555444
No 144
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.58 E-value=9.8 Score=32.20 Aligned_cols=58 Identities=26% Similarity=0.306 Sum_probs=43.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILT 122 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 122 (221)
+.+.+.+|.+.+|...+|..|.+++..|+.+|.+.++.. .+..+.+.++.+|++.+..
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~---~s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAA---GSDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence 445677787766666679999999999999999755443 2466788888899865543
No 145
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.46 E-value=19 Score=26.87 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=46.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH----HHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL----EKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~----~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
+.+|+.+++..|++++......|-..++++..+.+. ..+..++..|.++..+..+. +.++..+..++..+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 458888899999999999888877676666554222 23455677889888776432 234445555555433
No 146
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.36 E-value=30 Score=28.96 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=36.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 566888888999999999988889987766543211 222344455566665443
No 147
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.22 E-value=26 Score=28.05 Aligned_cols=32 Identities=38% Similarity=0.364 Sum_probs=26.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+.++|..|.+++......|.+++++..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 56688888999999999988888987666543
No 148
>PRK07806 short chain dehydrogenase; Provisional
Probab=81.08 E-value=27 Score=28.03 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=35.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-H-HHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-L-EKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~-~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|..|.+++......|.+++++...... . .....++..+.++..+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 566888888999999999988889988776543211 1 11233455566665443
No 149
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.04 E-value=47 Score=30.83 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=41.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
.+++..+.|+.|+.++..-+..|.+++++-+ ++++.+.++..|.+++.-|..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC
Confidence 4589999999999999999999998766643 356777778888888876654
No 150
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.95 E-value=32 Score=29.21 Aligned_cols=57 Identities=26% Similarity=0.225 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQA-YGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~ 121 (221)
+...+.+|.+.+|.+.+|..|.++.-.|+.+|.+.++.. .+..+.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCceeE
Confidence 345577888877777779999999999999999854443 34667777777 8986443
No 151
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.67 E-value=28 Score=27.94 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+.++|-.|.+++......|.+++++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r 38 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADI 38 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 56688888899999999999888988776653
No 152
>PRK07062 short chain dehydrogenase; Provisional
Probab=80.29 E-value=30 Score=28.13 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=27.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
+..+|+.+++..|.+++......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 567888888999999999998889987666543
No 153
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.12 E-value=4.2 Score=31.04 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=32.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYG 116 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~G 116 (221)
|..-++||+|.|+|......|.+++++.++. ...+.++..+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhC
Confidence 6778999999999999999999999998753 4455554433
No 154
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=79.83 E-value=24 Score=28.31 Aligned_cols=54 Identities=26% Similarity=0.271 Sum_probs=34.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|..|.+++....+.|.++++...... .......++..+.++..+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVA 58 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 35588888899999999998888988765543221 1122344555666665544
No 155
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.56 E-value=12 Score=32.08 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.+|.+.+|. +.|..|.+++..|+.+|.+.+++. .+..+++.++.+|++.+.
T Consensus 159 ~~~~~~~g~~VlV~-G~g~iG~~a~~~a~~~G~~vi~~~---~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 159 LRASLPPGGRLGLY-GFGGSAHLTAQVALAQGATVHVMT---RGAAARRLALALGAASAG 214 (329)
T ss_pred HhcCCCCCCEEEEE-cCCHHHHHHHHHHHHCCCeEEEEe---CChHHHHHHHHhCCceec
Confidence 34557777775554 458889988899999998744332 346678889999997654
No 156
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=79.46 E-value=22 Score=26.04 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=49.1
Q ss_pred HHHHHHcCCeEEEEecC-CCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhH
Q 043209 86 ACFAAAKGYKLILVMPA-FMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETT 164 (221)
Q Consensus 86 A~~a~~~g~~~~ivvp~-~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~ 164 (221)
+...+..+.+..++... .............+..++.= ..+++.+++..+.+...+.-....+-..|.|.... .+-
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~l-- 78 (122)
T PF09837_consen 3 AALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DDL-- 78 (122)
T ss_dssp -----TSSSEEEEEE----TTHHHHHHHH-TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HHH--
T ss_pred cccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHH--
Confidence 44556667888887744 33333333244455555543 33368899998877763333456666667777654 222
Q ss_pred HHHHHHhhCCCCCEEEEccCchh
Q 043209 165 GPEIWEGTRGQVDIFVSGIGTGG 187 (221)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~p~G~Gg 187 (221)
.+.++.+ ...|.|+.|+--||
T Consensus 79 -~~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 79 -EQAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp -HHHHHHT-TT-SEEEEEBTTSS
T ss_pred -HHHHHHh-ccCCEEEeeccCCC
Confidence 3444444 23599999998776
No 157
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.42 E-value=25 Score=29.84 Aligned_cols=56 Identities=30% Similarity=0.445 Sum_probs=41.0
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++.+.+|...+|..|.+++..|+.+|.+++++... . +.+.++.+|++.+.
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 44556777776666677999999999999999996555432 2 66677788986443
No 158
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.41 E-value=29 Score=27.47 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=35.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL-EKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|..|..++......|.+++++....... .....++..|.++..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 4668888899999999999888899865555432221 12344455666665543
No 159
>PRK05650 short chain dehydrogenase; Provisional
Probab=79.38 E-value=32 Score=28.13 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=32.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILT 122 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v 122 (221)
+.+|+.++|..|.+++......|.+++++...... ......++..|.++..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 54 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQ 54 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEE
Confidence 34788888999999998888888886665533211 12223344445555443
No 160
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.21 E-value=31 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=25.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVM 100 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivv 100 (221)
++.+|+..+|-.|.+++......|.+++++.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 5668888999999999998888888766555
No 161
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=79.11 E-value=26 Score=29.93 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILT 122 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 122 (221)
+...+.++.+.+|. ++|..|.+++..|+.+|.+.++++ +.+..+.+.++.+|++.+..
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~--~~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVS--EPSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEEC
Confidence 34456677775555 468999999999999999544444 23566777777889876553
No 162
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=79.02 E-value=23 Score=30.58 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=45.7
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEE
Q 043209 61 EEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQA-YGAQLIL 121 (221)
Q Consensus 61 ~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~ 121 (221)
++-|..++|++.+|++.+|-.|.-+.-.|+..|.+++-+.- +.+|.+.+.. +|-+...
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 45677788899999999999999999999999999888773 4667777766 6655543
No 163
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=78.95 E-value=8.4 Score=31.11 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCCC-HH-HHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhh
Q 043209 77 TSGNTGIGMACFAAAKGYKLILVMPAFMS-LE-KRIILQAYGAQLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 77 ssGN~~~alA~~a~~~g~~~~ivvp~~~~-~~-~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
+++.-|.++|....+.|.++++.-..... .. ..+..+.++.+++.++-. +.++..+...+..++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~ 69 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVER 69 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhh
Confidence 45667888888888888877666544321 11 223345577777665544 233334444444443
No 164
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.89 E-value=24 Score=28.66 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=44.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+..+|..|.+++......|.+++++..........+.+...+.++..+..+- +.++..+...+..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 677888889999999999988899988877654211222334555676665444321 233444444544443
No 165
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=78.81 E-value=41 Score=28.96 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=41.2
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQ-AYGAQLIL 121 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~Ga~V~~ 121 (221)
.+.+.+|.+.+|.+.+|..|.++...|+.+|.+.+++. .+..+.+.++ .+|++-+.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEE
Confidence 45567787766777779999999999999998744432 3566777776 68986554
No 166
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.69 E-value=34 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVM 100 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivv 100 (221)
.+|+.+++..|.+++......|.++++..
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 48888899999999999888898766554
No 167
>PRK06348 aspartate aminotransferase; Provisional
Probab=78.67 E-value=44 Score=29.12 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=45.2
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC--CCChhHHHHHHHHHHhhCCCeeecC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA--EMGIDEEFRIVEELLNKIPTSFNPH 149 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~~ 149 (221)
.|+..+++.++..++..+- .+-.-.|++|.-.-..-...++..|++++.++. +.++.-..+..++..++....+++.
T Consensus 91 ~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~ 169 (384)
T PRK06348 91 EIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILN 169 (384)
T ss_pred hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEe
Confidence 3777777777666555543 222235666654445566677788999988763 2122212232333333344667775
Q ss_pred CCCCCc
Q 043209 150 QFKNPA 155 (221)
Q Consensus 150 ~~~n~~ 155 (221)
...||.
T Consensus 170 ~p~NPt 175 (384)
T PRK06348 170 SPNNPT 175 (384)
T ss_pred CCCCCC
Confidence 445554
No 168
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.56 E-value=18 Score=31.48 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=47.2
Q ss_pred HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 60 AEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 60 a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
++++..+.||+. |...+.|-.|....-+|+.+|.+++++- .+..|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEcC
Confidence 445556788876 7777777788888888898997666664 578899999999999988754
No 169
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=78.43 E-value=5.3 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccC
Q 043209 168 IWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAIL 216 (221)
Q Consensus 168 i~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s~~~ 216 (221)
.+++.-...|.+|+-...|...--++-.++....++-|+.|++.++..+
T Consensus 4 ~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vI 52 (84)
T PF11760_consen 4 LLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVI 52 (84)
T ss_dssp -HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEE
T ss_pred HHHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEE
Confidence 3444435689999999999999999999998888999999999986543
No 170
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.33 E-value=22 Score=30.84 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=44.7
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 61 EEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 61 ~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
.+.| +.||+..-|..-+| .|.----+|+.+|++++++-.. +..+.+.++.+||+...+..
T Consensus 175 k~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 175 KRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred HHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 4455 56998745555555 8777778899999999988743 45677888999999988765
No 171
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.82 E-value=26 Score=28.27 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=39.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|..|.+++......|.+++++..... .....+.++..|.++..+..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEEC
Confidence 56789999999999999999999998776654321 22334556667888766543
No 172
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.69 E-value=40 Score=28.13 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC----CCcEE
Q 043209 130 EEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKN----PEIKV 205 (221)
Q Consensus 130 ~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~----~~~kv 205 (221)
.+.+-.++..++.++..........+....++ ....+++++. +++|+||+. +...+.|+..++++.+ .++.|
T Consensus 159 ~R~~Gf~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~v 234 (305)
T cd06324 159 LREAGLRRALAEHPDVRLRQVVYAGWSEDEAY-EQAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLF 234 (305)
T ss_pred HHHHHHHHHHHHCCCceEeeeecCCCCHHHHH-HHHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEE
Confidence 34444455556653221111111223333243 3556666654 568998863 5677789999999876 36889
Q ss_pred EEEeCC
Q 043209 206 YGVEPA 211 (221)
Q Consensus 206 igVe~~ 211 (221)
+|.+-.
T Consensus 235 ig~D~~ 240 (305)
T cd06324 235 GGVNWS 240 (305)
T ss_pred EecCCC
Confidence 998744
No 173
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.53 E-value=35 Score=27.28 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=26.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 566888899999999999988889986666533
No 174
>PRK08589 short chain dehydrogenase; Validated
Probab=77.37 E-value=21 Score=29.45 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=45.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhhC
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNKI 142 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 142 (221)
+++.+|+..++--|.+++......|.+++++-.........+.++..+.++..+..+ .+.++......+..++.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 356788888899999999998888998777754421222344555667666544332 12334444555554443
No 175
>PRK12828 short chain dehydrogenase; Provisional
Probab=77.31 E-value=30 Score=27.33 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~ 125 (221)
+++.+|+.++|..|.+++......|.+++++...... ......+...+.+++..+-.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLV 64 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecC
Confidence 3577888899999999999888889987666653221 23344556667777776654
No 176
>PRK06720 hypothetical protein; Provisional
Probab=77.17 E-value=31 Score=26.60 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=42.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLE-KRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~-~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 142 (221)
+..+|+..++-.|.+++......|.+++++-....... ..+.+...|.++..+..+ .+.++..+...+..++.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56678888888999999988888987665543321111 124444556665544322 12344455555544443
No 177
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=77.15 E-value=51 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=39.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
+++.-+.|..|.+.+..++.+|..++++- ....+++..+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEeccc
Confidence 47778899999999999999998744442 345678888899999987764
No 178
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.75 E-value=20 Score=30.63 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++.+.+|. +.|..|.++...|+.+|.+.++.+. .+..+++.++.+|++-+.
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTF 210 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEe
Confidence 34456677775555 6799999999999999997555552 356677778889986543
No 179
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.74 E-value=20 Score=30.76 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=45.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
+..+|+..+|..|.+++......|.+++++..... .....+.++..|.++..+..+ .+.++..+.+.+..++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56688888899999999999889998777654321 122344566778887665433 1333444444444444
No 180
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=76.63 E-value=7.4 Score=36.15 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC------------------CCHHHHHHHHHcCCEEEE
Q 043209 67 TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAF------------------MSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 67 ~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~------------------~~~~~~~~l~~~Ga~V~~ 121 (221)
.+|++ |+..++|..|.+.|..++.+|.+++++=... ....+++.++.+|++++.
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 34554 8999999999999999999999977764221 124566778899998765
No 181
>PRK06197 short chain dehydrogenase; Provisional
Probab=76.53 E-value=43 Score=28.04 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=26.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
+..+|+.++|.-|.+++......|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 567888888999999998888889887766543
No 182
>PRK07832 short chain dehydrogenase; Provisional
Probab=76.33 E-value=25 Score=28.82 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=24.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEe
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVM 100 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivv 100 (221)
+.+|+.++|..|.+++......|.+++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 347888889999999999888898765554
No 183
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.14 E-value=34 Score=29.05 Aligned_cols=72 Identities=26% Similarity=0.325 Sum_probs=50.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCC-E-EEEe--CCCCChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKR-IILQAYGA-Q-LILT--NAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~-~~l~~~Ga-~-V~~v--~~~~~~~~~~~~a~~~~~~~ 142 (221)
+..+||..|+--|.++|+.-.+.|.+.++++.......++ +.++..++ + |+.. |-. +.+++.+...+..++.
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs-~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVS-DEESVKKFVEWAIRHF 89 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccC-CHHHHHHHHHHHHHhc
Confidence 6778888888899999999999999999999776566666 66666654 3 4443 333 3455655555554444
No 184
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=76.00 E-value=34 Score=27.41 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=44.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+..+|.-|.+++......|.+++++.... .....+.++.++.++..+..+- +.++.....++..++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678888889999999999998999876665432 2333455666776665554331 233344444444433
No 185
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.98 E-value=48 Score=28.10 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=39.2
Q ss_pred cCCCCCC--CeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH-cCCEEEEeC
Q 043209 63 KGLITPG--KTVLIECTSGNTGIGMACFAAAKGY-KLILVMPAFMSLEKRIILQA-YGAQLILTN 123 (221)
Q Consensus 63 ~g~~~~g--~~~vv~assGN~~~alA~~a~~~g~-~~~ivvp~~~~~~~~~~l~~-~Ga~V~~v~ 123 (221)
.+.+.++ .+.+|...+|..|.++.-.|+.+|. +++++.+ +..+.+.++. +|++-+...
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 3445554 5656666679999999999999998 5554432 4566666665 898655443
No 186
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=75.83 E-value=28 Score=29.15 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=34.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+.+.+|...+|..|.+++..|+.+|.+.++... +..+.+.++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEE
Confidence 445556666699999999999999997554432 3456666677887443
No 187
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=75.66 E-value=21 Score=30.90 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++.+.+|. ++|..|.+++..|+.+|.+.++.+. .+..+++.++.+|++.+.
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEE
Confidence 33456677775665 5799999999999999985444442 346677777889986544
No 188
>PLN02740 Alcohol dehydrogenase-like
Probab=75.61 E-value=22 Score=31.09 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.+|.+.+|. +.|..|.+++..|+.+|.+-++.+ +.+..+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGV--DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEE--cCChHHHHHHHHcCCcEEE
Confidence 34556777764554 579999999999999998544444 2356778888889986543
No 189
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=75.43 E-value=23 Score=30.71 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.+|.+.+|. ++|..|.+++..|+.+|.+.++.+ +.+..+++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 34556777775555 579999999999999998444444 3356788888889986544
No 190
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=75.31 E-value=21 Score=30.92 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.+.+|.+.+|. ++|..|.+++..|+.+|.+.++++. .+..+++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVD--INEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCcEe
Confidence 44557778775555 6799999999999999985444442 256777777888985443
No 191
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.19 E-value=16 Score=32.82 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+...+|++ |+..+.|.-|..++..++.+|.++++ + +.++.+....+.+|++++
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV-~--d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIV-T--EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEE-E--ECChhhHHHHHhcCCEEc
Confidence 44455655 89999999999999999999997544 3 234556666777887654
No 192
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=75.00 E-value=25 Score=28.74 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=43.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+.+++..|.+++......|.+++++-..... ......++..|.++..+..+. +.++..+...+..++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 567888999999999999988899987666322111 122344556677776554331 233334444444433
No 193
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=74.97 E-value=18 Score=27.70 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEEecCC--CCH--HHH----HHHHHcCCEEEEeC
Q 043209 79 GNTGIGMACFAAAKGYKLILVMPAF--MSL--EKR----IILQAYGAQLILTN 123 (221)
Q Consensus 79 GN~~~alA~~a~~~g~~~~ivvp~~--~~~--~~~----~~l~~~Ga~V~~v~ 123 (221)
+|.+.|++..+.++|+.++++.|+. .+. ..+ +..+..|.++...+
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999999999988888997 444 223 33455688888774
No 194
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=74.79 E-value=24 Score=30.54 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=39.9
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
...+.+|.+.+|. ++|..|.+++..|+.+|.+.++.+. .+..+++.++.+|++.+.
T Consensus 182 ~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~--~~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 182 VAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVD--LNPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 3456677775555 5799999999999999984444442 245678888899986544
No 195
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=74.63 E-value=37 Score=28.31 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=37.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
+...+.++...+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++-
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~ 187 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGP 187 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCE
Confidence 33456677776666667999999999999999987666432 33445555566643
No 196
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=74.60 E-value=22 Score=27.62 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=68.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
+|..-+.|+-|+++|..++.+|++++.+-|...+.. .....+.+ .. ++++ +.++. +...+.--
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~--~~----~l~e-------ll~~a-Div~~~~p 100 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVE--YV----SLDE-------LLAQA-DIVSLHLP 100 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEE--ES----SHHH-------HHHH--SEEEE-SS
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hcccccce--ee----ehhh-------hcchh-hhhhhhhc
Confidence 488889999999999999999998888887753222 22233331 11 1332 22333 34433322
Q ss_pred CCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHhcCCCcEEEEEeC
Q 043209 152 KNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTV--SGVGNFLKKKNPEIKVYGVEP 210 (221)
Q Consensus 152 ~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~--~Gi~~~~~~~~~~~kvigVe~ 210 (221)
.++.+ ...+..|.++++ +++.+++-++-|..+ ..+..+++. ..+.-.+.+.
T Consensus 101 lt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV 153 (178)
T PF02826_consen 101 LTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDV 153 (178)
T ss_dssp SSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS
T ss_pred ccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEEC
Confidence 23322 245678889998 468999999998875 456666654 2344444443
No 197
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=74.19 E-value=58 Score=28.25 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=42.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQA-YGAQLILTNAE 125 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~v~~~ 125 (221)
+++..+.|.-|...+..++.+|...+|++ +.+..+++..+. .|++++..+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~~ 223 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPSE 223 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCcc
Confidence 59999999999999999999999888888 557888888877 77777665543
No 198
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=74.00 E-value=48 Score=28.10 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=38.2
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 65 LITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 65 ~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
.+.++.+.+|.. +|..|.++...|+.+|.+.+++.+ +..+++.++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 456666655555 899999999999999998544432 45677777889985443
No 199
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.60 E-value=25 Score=28.58 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=25.0
Q ss_pred CeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTS--GNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~ass--GN~~~alA~~a~~~g~~~~ivvp 101 (221)
+..+|+.++ +.-|.++|....+.|.++++...
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 566777766 68999999999999998766543
No 200
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=73.54 E-value=30 Score=30.39 Aligned_cols=55 Identities=29% Similarity=0.354 Sum_probs=40.7
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
..+.++...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVI 239 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEe
Confidence 3456666656666679999999999999999865443 345677788889986654
No 201
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.50 E-value=55 Score=27.69 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.+|.+.+|. ++|..|.+++..|+.+|.+-++++ +.+..+++.++.+|++.+.
T Consensus 157 ~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 157 RRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFVI 213 (339)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEE
Confidence 33345677775665 568999999999999999833333 2356677788889986544
No 202
>PRK07550 hypothetical protein; Provisional
Probab=73.14 E-value=62 Score=28.13 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=33.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
.|+..+++..+..++..+- .+-.-.|++|.-.-..-...++..|++++.++.
T Consensus 92 ~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 92 QVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred eEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 3666666677665554443 333445777664444445567889999998875
No 203
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=73.02 E-value=30 Score=30.10 Aligned_cols=84 Identities=8% Similarity=0.029 Sum_probs=45.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHh----hCCCeee
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLN----KIPTSFN 147 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~----~~~~~~~ 147 (221)
|+.++++..+..++..+....-+-.|++|.-.-..-...++.+|++++.++.+. ++.-..+..++..+ .....+|
T Consensus 94 I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~ 173 (374)
T PRK02610 94 ISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVF 173 (374)
T ss_pred EEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEE
Confidence 666666666665555444332222466666555666777889999999987431 12111122222222 2346777
Q ss_pred cCCCCCCcc
Q 043209 148 PHQFKNPAN 156 (221)
Q Consensus 148 ~~~~~n~~~ 156 (221)
+...+||-.
T Consensus 174 l~~P~NPTG 182 (374)
T PRK02610 174 VVHPNSPTG 182 (374)
T ss_pred EeCCCCCCC
Confidence 765556543
No 204
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=72.88 E-value=31 Score=29.33 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 67 TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 67 ~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
.+|.+.+|. ..|..|.++...|+.+|.+.++++ +.+..+.+.++.+|++.+.
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 356665664 468999999999999998644444 3456777888889986544
No 205
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.84 E-value=49 Score=28.22 Aligned_cols=56 Identities=25% Similarity=0.263 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+...+.++.+.+|. .+|..|.+++..|+.+|.+.++.+.. +..+.+..+.+|++.+
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~ 215 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDI 215 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceE
Confidence 34456677775555 57899999999999999975555433 3566777778887544
No 206
>PRK06114 short chain dehydrogenase; Provisional
Probab=72.77 E-value=49 Score=26.74 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=38.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
+..+|+.++|--|.++|......|.++++....... ....+.++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 567888888999999999988899987776543221 233455666677666554
No 207
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=72.75 E-value=36 Score=27.89 Aligned_cols=55 Identities=22% Similarity=0.151 Sum_probs=37.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|..|.+++......|.+++++..... .....+.++..|.++..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKA 66 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56688888899999999999889998776654321 12233445566777765543
No 208
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.71 E-value=50 Score=29.48 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=45.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEEEeCCCCChhHHHHHHHHHHhh
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKR-IILQAYGAQLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~-~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
+++.+|+..+|..|.+++......|.+++++-... ....+ +..+..+..++.++-. +.++..+......++
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~-~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA-AGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc-cHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 46678888889999999999888999877664332 23333 3334567777777654 233444444444443
No 209
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=72.66 E-value=48 Score=27.89 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=36.5
Q ss_pred CeEEEe-eCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIE-CTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~-assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 123 (221)
...++. ..+|..|.++...|+.+|.+.+++. .+..+.+.++.+|++-+...
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIV---RRKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEEC
Confidence 344554 6778999999999999999754433 34677788888998765543
No 210
>PRK14030 glutamate dehydrogenase; Provisional
Probab=72.60 E-value=32 Score=31.23 Aligned_cols=59 Identities=24% Similarity=0.141 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEE--------ecCCCCHHH
Q 043209 50 DRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILV--------MPAFMSLEK 108 (221)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~iv--------vp~~~~~~~ 108 (221)
-|+..+.+..+.+.........+|+.-+.||-|..+|.....+|.+++.+ -|+..+..+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 45777777776554333332345899999999999999999999999884 455555555
No 211
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.52 E-value=28 Score=29.20 Aligned_cols=56 Identities=29% Similarity=0.372 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.+.++.+.+|. ++|..|.+++..|+.+|.+.++ + ..+..+.+.++.+|+....
T Consensus 149 ~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~-~--~~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 149 EQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVL-V--GRHSEKLALARRLGVETVL 204 (319)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEE-E--cCCHHHHHHHHHcCCcEEe
Confidence 45567777775665 5799999999999999999433 3 2346677777778986543
No 212
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=72.46 E-value=25 Score=30.12 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=55.9
Q ss_pred cccccCCCCCeEEEEeCCC-CCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 24 LNNIVDGCKARIAAKLEMM-EPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 24 ~~~l~~~~g~~i~~K~E~~-~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
+..|++.-+++||==+-|. +|+-..-|.. .-.+..|.+ .|.+.+.+.-+.|.+.|+-.+|..+|+.+++..|+
T Consensus 113 ve~lA~~s~VPViNgLtD~~HP~Q~LADl~-----Ti~E~~g~l-~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk 186 (310)
T COG0078 113 LEELAKYSGVPVINGLTDEFHPCQALADLM-----TIKEHFGSL-KGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPK 186 (310)
T ss_pred HHHHHHhCCCceEcccccccCcHHHHHHHH-----HHHHhcCcc-cCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCC
Confidence 3445555555655444444 4554322221 111233432 33454555566889999999999999999999999
Q ss_pred CC--CHHHHHH----HHHcCCEEEEeCC
Q 043209 103 FM--SLEKRII----LQAYGAQLILTNA 124 (221)
Q Consensus 103 ~~--~~~~~~~----l~~~Ga~V~~v~~ 124 (221)
.. ...-++. .+..|+.+..+..
T Consensus 187 ~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 187 GYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred cCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 63 2333333 2345888888754
No 213
>PRK08017 oxidoreductase; Provisional
Probab=72.31 E-value=49 Score=26.56 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=38.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
++.+|+..+|..|.+++......|.+++++.. +..+++.++..|++.+.++-.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r---~~~~~~~~~~~~~~~~~~D~~ 55 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACR---KPDDVARMNSLGFTGILLDLD 55 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHhHHHHhCCCeEEEeecC
Confidence 34588888899999999998888988665543 245555566678777766643
No 214
>PRK05876 short chain dehydrogenase; Provisional
Probab=71.53 E-value=34 Score=28.35 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
++..+|+.++|.-|.++|......|.+++++..... .....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356788889999999999998889998665542211 112234455667777655432 1234444444444443
No 215
>PRK07063 short chain dehydrogenase; Provisional
Probab=71.52 E-value=53 Score=26.57 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=25.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+.++|--|.+++......|.+++++..
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 56688888899999999988888988666543
No 216
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=71.43 E-value=39 Score=28.60 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=37.9
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 65 LITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 65 ~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.+.++...+|...++..|.+++..|+.+|.+.+++... ..+.+.++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEE
Confidence 46667776666677789999999999999976555433 455566677776544
No 217
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=71.26 E-value=38 Score=26.91 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCC-EEEEeCC
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAF-MSLEKRIILQAYGA-QLILTNA 124 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~-~~~~~~~~l~~~Ga-~V~~v~~ 124 (221)
++||. .++.-++|.-+.++-++...-..+++.+=.+. .-....+.++.+|. ++..+.+
T Consensus 32 ~~~g~-~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g 91 (187)
T COG2242 32 PRPGD-RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG 91 (187)
T ss_pred CCCCC-EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec
Confidence 34454 37777777666666666222244555544332 12222334556664 3444443
No 218
>PRK07201 short chain dehydrogenase; Provisional
Probab=70.93 E-value=48 Score=31.11 Aligned_cols=54 Identities=28% Similarity=0.188 Sum_probs=34.0
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILT 122 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v 122 (221)
+++.+|+.++|..|.+++..-...|.+++++...... ....+.++..|.++..+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 425 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAY 425 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 3566888888999999998877788876666543211 12223344456555544
No 219
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=70.84 E-value=43 Score=27.94 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=36.7
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 68 ~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
++...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++-+
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~---~~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVAST---GRPEEADYLRSLGASEI 195 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe---CCHHHHHHHHhcCCCEE
Confidence 445656666669999999999999999865554 24567777788998443
No 220
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.69 E-value=41 Score=27.04 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=37.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+..+|..|.+++......|.+++++...... ......++..+.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 567888889999999999988889887666533211 2224455667777665443
No 221
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=70.64 E-value=44 Score=25.83 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=44.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhhC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAF-----MSLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNKI 142 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~-----~~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~~ 142 (221)
.+|+.+.|..|..++..-...+-+-++++... .....++.++..|++|..+..+ .+.++..+...++.++.
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 47777889999999998777776555555333 2235788899999999877543 23344444444544443
No 222
>PRK05826 pyruvate kinase; Provisional
Probab=70.57 E-value=85 Score=28.68 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCeEEEE-----------ecCCCCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHhhCCCeeec
Q 043209 84 GMACFAAAKGYKLILV-----------MPAFMSLEKRIILQAYGAQLILTNAEM----GIDEEFRIVEELLNKIPTSFNP 148 (221)
Q Consensus 84 alA~~a~~~g~~~~iv-----------vp~~~~~~~~~~l~~~Ga~V~~v~~~~----~~~~~~~~a~~~~~~~~~~~~~ 148 (221)
-+...|+..|.++++- .|..+....+...-..|++-+..+.++ ...++.+...+.+++-...++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3455688889887763 344334445556667899988776542 2235555444444322111111
Q ss_pred ----CCCCC--CccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 149 ----HQFKN--PANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 149 ----~~~~n--~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
....+ ....+ .....+.++.++++ ..+.||+.+-+|.++--+++ ..|...|+++.+..
T Consensus 343 ~~~~~~~~~~~~~~~~-~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk----~RP~~pI~~~t~~~ 406 (465)
T PRK05826 343 NLSKHRLDRQFDRIDE-AIAMSAMYAANHLK-GVKAIVALTESGRTARLISR----FRPGAPIFAVTRDE 406 (465)
T ss_pred hhhhhhccccccchHH-HHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHh----hCCCCCEEEEcCCH
Confidence 00001 11122 45556677877773 26789999999998666544 46888888887754
No 223
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=70.34 E-value=31 Score=34.42 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=28.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
+.|+.-++|..|.+.|+..++.|++++||=..
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 44999999999999999999999999998644
No 224
>PRK12939 short chain dehydrogenase; Provisional
Probab=69.93 E-value=45 Score=26.57 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=36.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|..|.+++......|.+.+++..... .......++..+.++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 56688888899999999999889998666632211 12233445556766665543
No 225
>PRK05693 short chain dehydrogenase; Provisional
Probab=69.81 E-value=60 Score=26.55 Aligned_cols=67 Identities=25% Similarity=0.212 Sum_probs=43.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhh
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
+.+|+..+|-.|.+++......|.+++++... ..+.+.+...+.+.+.++-. +.++..+...+..++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 45888888999999999988889887766433 34455555667776666654 234444444444443
No 226
>PRK07035 short chain dehydrogenase; Provisional
Probab=69.78 E-value=47 Score=26.70 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=43.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
++.+|+..+|..|.+++......|.+++++...... ....+.+...|.++..+..+ .+.++..+...+..+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 566888899999999999999899987766543211 12234455566666544332 1233344444444443
No 227
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=69.45 E-value=25 Score=30.71 Aligned_cols=54 Identities=33% Similarity=0.366 Sum_probs=40.3
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 65 LITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 65 ~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
.+.++.+.+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.+.
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 456666655655569999999999999999866543 356778888889986543
No 228
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.42 E-value=49 Score=27.86 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=39.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeCCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
++.+|+.++|..|.++|......|.++++.-.... .....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 56788888999999999998888988666543221 123345567778888766543
No 229
>PRK12937 short chain dehydrogenase; Provisional
Probab=69.36 E-value=56 Score=25.98 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=45.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|..|.++|......|.+++++...... ....+.++..+.++..+..+- +.++..+..++..++
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 566888889999999999998899987766543221 223445666788877665431 233333444444333
No 230
>PRK06483 dihydromonapterin reductase; Provisional
Probab=69.34 E-value=56 Score=25.98 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=44.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|-.|.++|......|.+++++-... ....+.++..|+..+.++-. +.++..+...+..+.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQH 71 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHhh
Confidence 4568888899999999999888899877765332 22344555677777666643 234444444454443
No 231
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=69.15 E-value=48 Score=26.48 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=38.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~ 125 (221)
++.+|+..+|--|.+++......|.++++....... ......++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 567888889999999999888889887654432211 12234556677788766543
No 232
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.09 E-value=45 Score=26.56 Aligned_cols=55 Identities=27% Similarity=0.186 Sum_probs=36.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|..|.+++......|.+++++..... .....+.++..|+++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 56688888899999999998888987655543321 12233445666877765443
No 233
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=69.01 E-value=67 Score=26.78 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=40.3
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.++...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|++.+.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILI 190 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEE
Confidence 4566777766666789999999999999999865543 345666666778885443
No 234
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=68.94 E-value=50 Score=28.03 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+.++.+.+|. .+|..|.+++..|+.+|.+.++++ +.+..+.+.++.+|++.+
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 4566676665 468899999999999998755555 336777788888888543
No 235
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=68.90 E-value=28 Score=31.30 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=39.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-----CCHHHHHHHHHcCCEEEE
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAF-----MSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~-----~~~~~~~~l~~~Ga~V~~ 121 (221)
.|+..++||.|.-+|..+.++|.+++++.... .....++.++..|.+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 48999999999999999999999988887542 223445667888888874
No 236
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=68.74 E-value=72 Score=27.53 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=39.7
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
...+.++.+.+|. ++|..|.++...|+.+|.+.++.+.. +..+...++.+|++.++
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 3456667775565 57999999999999999975554433 46677777888885444
No 237
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=68.45 E-value=40 Score=28.32 Aligned_cols=72 Identities=29% Similarity=0.326 Sum_probs=45.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHH-HHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL-EKRIIL-QAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l-~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+..|+.-|.++|...+..|.+++++......- ...+++ +..|.+|...+-+- +.++..+...++..+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 5779999999999999999999999999998664222 222233 34566665444321 234444444444443
No 238
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.09 E-value=61 Score=26.43 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=33.1
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC-CcEEEEEeCCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNP-EIKVYGVEPAE 212 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~-~~kvigVe~~~ 212 (221)
....+++++- +++|+|||.- ..++.|+..++++.+. ++.|+|++...
T Consensus 172 ~~~~~~l~~~-~~~~ai~~~n--d~~a~g~~~al~~~g~~di~vvgfd~~~ 219 (272)
T cd06313 172 RIWETWLTKY-PQLDGAFCHN--DSMALAAYQIMKAAGRTKIVIGGVDGDP 219 (272)
T ss_pred HHHHHHHHhC-CCCCEEEECC--CcHHHHHHHHHHHcCCCceEEEeecCCH
Confidence 4455555553 4689988743 4577788999988764 88899887553
No 239
>PRK07454 short chain dehydrogenase; Provisional
Probab=67.92 E-value=52 Score=26.19 Aligned_cols=72 Identities=21% Similarity=0.148 Sum_probs=43.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|..|.+++......|.+++++..... .....+.++..+.++..+..+ .+.++..+..++..+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45688888899999999999989998777653321 112223345556666544332 1344444444444443
No 240
>PRK06841 short chain dehydrogenase; Provisional
Probab=67.89 E-value=52 Score=26.43 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=26.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++.+|+..+|.-|.++|......|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 566888888999999999998899986665543
No 241
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.77 E-value=59 Score=26.85 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=40.7
Q ss_pred CeEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEE-EEeCCCCChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSG--NTGIGMACFAAAKGYKLILVMPAFMSLEKRIIL-QAYGAQL-ILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assG--N~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V-~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
+..+|+..++ .-|.++|......|.+++++-.......+++.+ +..|..+ +.+|-. +.++..+...+..++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~-d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVE-DIASVDAVFEALEKK 82 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCC-CHHHHHHHHHHHHHH
Confidence 5667777765 789999999888999877654322122233333 3346433 333433 344555555555544
No 242
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=67.76 E-value=38 Score=24.27 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCCC-ChhHH
Q 043209 54 FSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIIL-QAYGAQLILTNAEM-GIDEE 131 (221)
Q Consensus 54 ~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~~~-~~~~~ 131 (221)
......+.+.+. +..|+...+|++++.+|.+-. ..+.+++.|.. ...+++ -.+|..-+.++... +.++.
T Consensus 6 ~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~RP--~~pIiavt~~~---~~~r~l~l~~GV~p~~~~~~~~~~~~~ 76 (117)
T PF02887_consen 6 RAAVELAEDLNA----KAIVVFTESGRTARLISKYRP--KVPIIAVTPNE---SVARQLSLYWGVYPVLIEEFDKDTEEL 76 (117)
T ss_dssp HHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT-T--SSEEEEEESSH---HHHHHGGGSTTEEEEECSSHSHSHHHH
T ss_pred HHHHHHHHhcCC----CEEEEECCCchHHHHHHhhCC--CCeEEEEcCcH---HHHhhhhcccceEEEEeccccccHHHH
Confidence 334444444442 343445556777666554322 35555555542 222222 34666665555443 34555
Q ss_pred HHHHHHHHhhC
Q 043209 132 FRIVEELLNKI 142 (221)
Q Consensus 132 ~~~a~~~~~~~ 142 (221)
.+.+.+.+++.
T Consensus 77 ~~~a~~~~~~~ 87 (117)
T PF02887_consen 77 IAEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66666665555
No 243
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=67.59 E-value=63 Score=26.76 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe-CCCCChhHHHHHHHHHHhh--CCCeeecCCC----CCCc
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILT-NAEMGIDEEFRIVEELLNK--IPTSFNPHQF----KNPA 155 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v-~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~----~n~~ 155 (221)
.+++++-+++|-|+.+ +.-+.-..+++.+ +|.+=..| +--.-.+.....-+.+-++ .++.+.++-. .|..
T Consensus 21 Anig~aLA~~GkKv~l-iD~DiGLRNLDli--mGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQtrdKdal 97 (272)
T COG2894 21 ANIGTALAQLGKKVVL-IDFDIGLRNLDLI--MGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQTRDKDAL 97 (272)
T ss_pred HHHHHHHHHcCCeEEE-EecCcCchhhhhh--hcccceeeeeehhhhcCccchhhHhhccccCCceEecccccccCcccC
Confidence 3444455567776554 4455556666655 56543322 1100011222222333332 2334444322 2455
Q ss_pred cHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhc--CCCcEEEEEeCCCCc
Q 043209 156 NPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKK--NPEIKVYGVEPAESA 214 (221)
Q Consensus 156 ~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~--~~~~kvigVe~~~s~ 214 (221)
..+ +...+..|+.+ ..+|||+|=+ -+||=+||+.. ..+--++.+.||-|.
T Consensus 98 t~E-~v~~vv~eL~~---~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSs 149 (272)
T COG2894 98 TPE-GVKKVVNELKA---MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSS 149 (272)
T ss_pred CHH-HHHHHHHHHHh---cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCccc
Confidence 566 66666666655 3699999854 56666777653 345678888888764
No 244
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.42 E-value=58 Score=26.08 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=38.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL-EKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+..+|..|.+++..-...|.+++++....... .....++..+.++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 5668888899999999999888899887776443222 223445556777655443
No 245
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=67.32 E-value=50 Score=26.58 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=42.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHh
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLN 140 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~ 140 (221)
+++.+|+..+|..|.+++......|.+++++...... ......++..|.++..+..+ .+.++..+..++..+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3677888888999999999888889987666543211 12234455567655544332 123333444444433
No 246
>PLN02827 Alcohol dehydrogenase-like
Probab=67.20 E-value=48 Score=28.93 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=40.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.+|.+.+|. +.|-.|.++...|+.+|.+.++.+. .+..+.+.++.+|++-+.
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~--~~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVD--INPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCcEEE
Confidence 34556777775555 5688999999999999986555543 246677888889986443
No 247
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.03 E-value=66 Score=25.96 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=23.2
Q ss_pred CeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTS--GNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~ass--GN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+..+ |..|.+++......|.+++++..
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r 39 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYW 39 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcC
Confidence 455666665 47899999888888987766643
No 248
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=66.88 E-value=73 Score=26.44 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=38.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
+...+.++...+|...+|..|.+++..|+.+|.+.+++.+ +..+.+.++.+|++-
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 190 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADV 190 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 3455666777666666899999999999999998554432 344555566777743
No 249
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.66 E-value=53 Score=25.93 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=37.7
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhC
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~ 142 (221)
+-|--.|||-+|.++|..+...|..++++........ -.+.+++.+.. .++-.+.+++...+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 3345568899999999999999999999884431111 24666776655 345555555555544
No 250
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.53 E-value=80 Score=26.71 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
...+.++...+| .++|..|.++...|+.+|.+.++.+.. +..+.+.++.+|++-+.
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HEDRQALAREFGATDIV 218 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHcCCceEe
Confidence 334566666566 568999999999999999976555543 34566777888884433
No 251
>PRK05867 short chain dehydrogenase; Provisional
Probab=66.45 E-value=58 Score=26.26 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=43.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
+..+|+.++|.-|.+++......|.+++++...... ....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567888888999999999988899986665432111 12234455567666554332 1233444444444443
No 252
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=66.44 E-value=54 Score=26.38 Aligned_cols=72 Identities=17% Similarity=0.076 Sum_probs=42.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
+..+|+.++|..|.+++......|.+++++...... ......++..+.++..+..+. +.++..+...+..++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999998889876665432111 122344555566665543321 233344444444433
No 253
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=66.40 E-value=90 Score=27.27 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=51.5
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCChHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHcCCE
Q 043209 44 PCSSVKDRIAFSMIKDAEEKGL--ITPGKTVLIECTSGNTGIGMACFAAAKGY---KLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 44 ptGs~K~R~a~~~~~~a~~~g~--~~~g~~~vv~assGN~~~alA~~a~~~g~---~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
+.|.-+.|-+..-... ...|. +.+. ..|+..+++..+..++..+-. +- .-.|++|.-.-..-...++..|++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~ 140 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPA-TQVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPNPFYQIYEGAALLAGAE 140 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCcc-ceEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcCCCccchHHHHHhcCCE
Confidence 3566666644332211 12242 2332 236666666666554444322 22 234555543334445567789999
Q ss_pred EEEeCCCC--ChhHHHHHHHHHHhhCCCeeecCCCCCCc
Q 043209 119 LILTNAEM--GIDEEFRIVEELLNKIPTSFNPHQFKNPA 155 (221)
Q Consensus 119 V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~ 155 (221)
++.++-+. +|.-..+..++...+....+|++...||-
T Consensus 141 ~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPT 179 (396)
T PRK09147 141 PYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPT 179 (396)
T ss_pred EEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCc
Confidence 99886431 22211222222222234567775444544
No 254
>PRK07024 short chain dehydrogenase; Provisional
Probab=66.37 E-value=69 Score=25.91 Aligned_cols=32 Identities=31% Similarity=0.247 Sum_probs=25.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+.++|--|.+++......|.+++++..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888999999999998888987666543
No 255
>PRK07890 short chain dehydrogenase; Provisional
Probab=66.32 E-value=56 Score=26.24 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=36.4
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 123 (221)
+++.+|+.++|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 3677888999999999999999999987666533211 122233444566665444
No 256
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=66.18 E-value=52 Score=29.61 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.2
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEecCCC
Q 043209 76 CTSGNTGIGMACFAAAKGYKLILVMPAFM 104 (221)
Q Consensus 76 assGN~~~alA~~a~~~g~~~~ivvp~~~ 104 (221)
.+-|.+..+|+.+-+.+|.++.|++|...
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 33488888999998899999999999854
No 257
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=65.85 E-value=45 Score=26.73 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=53.7
Q ss_pred EEeeCCChHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHH----HHHHhhCCCee
Q 043209 73 LIECTSGNTGIGMACFAAAKG--YKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIV----EELLNKIPTSF 146 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g--~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a----~~~~~~~~~~~ 146 (221)
|..+++|+.-.|+.-+++.-. .+...++.+.....-++..+..|-....++.. +|.++.++- +.+.+..++++
T Consensus 5 VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k-~~~~r~~~d~~l~~~l~~~~~dlv 83 (200)
T COG0299 5 VLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRK-EFPSREAFDRALVEALDEYGPDLV 83 (200)
T ss_pred EEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccc-cCCCHHHHHHHHHHHHHhcCCCEE
Confidence 444455666688888887433 35555667766777778888888887776654 243332222 23333333333
Q ss_pred ecCCCCCCccHHHHH-hhHHHHHHHhhCC
Q 043209 147 NPHQFKNPANPKTHY-ETTGPEIWEGTRG 174 (221)
Q Consensus 147 ~~~~~~n~~~~~~g~-~t~~~Ei~~q~~~ 174 (221)
.+ +|| +.++.++++++++
T Consensus 84 vL----------AGyMrIL~~~fl~~~~g 102 (200)
T COG0299 84 VL----------AGYMRILGPEFLSRFEG 102 (200)
T ss_pred EE----------cchHHHcCHHHHHHhhc
Confidence 33 343 4577788888754
No 258
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.80 E-value=55 Score=26.63 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=35.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILT 122 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v 122 (221)
++.+|+.++|--|.+++......|.+++++...... ......++..+.++..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~ 64 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVV 64 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 567888889999999999888889977666543211 12233344456666544
No 259
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.75 E-value=70 Score=25.78 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=44.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|--|.+++......|.+++++... +....+.++..+...+.++-. +.++..+...+..++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~--~~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNS--AENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC--cHHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHH
Confidence 566888888999999999988889887665433 234445555556666666654 344444444444443
No 260
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=65.34 E-value=68 Score=26.63 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
.+.+.++.+.+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 185 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGAD 185 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCC
Confidence 3445666675666667899999999999999987655443 3445555667764
No 261
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=65.26 E-value=74 Score=25.91 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=40.4
Q ss_pred CeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEe-cCC--CCHHHHHHHHHcCCEEE--EeCCCCChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTS--GNTGIGMACFAAAKGYKLILVM-PAF--MSLEKRIILQAYGAQLI--LTNAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~ass--GN~~~alA~~a~~~g~~~~ivv-p~~--~~~~~~~~l~~~Ga~V~--~v~~~~~~~~~~~~a~~~~~~~ 142 (221)
+..+|+.++ +--|.++|......|.++++.. +.. .....++.++..+.++. .+|-. +.++..+...+..++.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~v~~~~~~~~~~~ 85 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQ-DDAQIEETFETIKQKW 85 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcC-CHHHHHHHHHHHHHHc
Confidence 566777754 5788899988888999876653 221 12334555554443333 33332 3344445555554443
No 262
>PRK10083 putative oxidoreductase; Provisional
Probab=65.13 E-value=62 Score=27.30 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 61 EEKGLITPGKTVLIECTSGNTGIGMACFAAA-KGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 61 ~~~g~~~~g~~~vv~assGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
.+...+.++.+.+|.. +|-.|.+++..|+. +|.+.++.+.. +..+.+.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3445667777755544 78888888888886 59876666533 56777888888986543
No 263
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=65.11 E-value=54 Score=28.48 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
+...+.++.+.+|. +.|..|.+++..|+.+|.+.++++. .+..+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCc
Confidence 34556677765555 6799999999999999985444442 246677777888884
No 264
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=64.96 E-value=24 Score=25.06 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC--CCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHH
Q 043209 83 IGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA--EMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTH 160 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g 160 (221)
..++.+.++.|+++.++=.......-.+.++....+++.++. ...+....+.++...+..++...+- .|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~---------GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV---------GG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE---------EE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE---------EC
Confidence 345555677799888664333235556778889999988765 2234455666666544444433331 12
Q ss_pred -HhhHHHH-HHHhhCCCCCEEEEccCc
Q 043209 161 -YETTGPE-IWEGTRGQVDIFVSGIGT 185 (221)
Q Consensus 161 -~~t~~~E-i~~q~~~~~d~vv~p~G~ 185 (221)
+.+..+| +++.. ..+|++|..=|-
T Consensus 89 ~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 89 PHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp SSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CchhcChHHHhccC-cCcceecCCChH
Confidence 1244444 44432 357888876654
No 265
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=64.85 E-value=20 Score=25.72 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=32.5
Q ss_pred hHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 163 TTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
..+.++.+++ +...||+..-+|.++ ..+.+..|...|++|.+..
T Consensus 6 ~aa~~~A~~~--~ak~Ivv~T~sG~ta----~~isk~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 6 RAAVELAEDL--NAKAIVVFTESGRTA----RLISKYRPKVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHHH--TESEEEEE-SSSHHH----HHHHHT-TSSEEEEEESSH
T ss_pred HHHHHHHHhc--CCCEEEEECCCchHH----HHHHhhCCCCeEEEEcCcH
Confidence 3556788887 378999999999994 4455567899999998864
No 266
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=64.77 E-value=63 Score=24.94 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=51.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC---------CCCHHHHHHHHH
Q 043209 44 PCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPA---------FMSLEKRIILQA 114 (221)
Q Consensus 44 ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~---------~~~~~~~~~l~~ 114 (221)
|.--+-++.....+.+|.+.|. +..||.+|+|.+++-+.-.... .+++++|.-. ....+-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445678888888899998885 5655666668887766555432 3777776421 135667888999
Q ss_pred cCCEEEEeC
Q 043209 115 YGAQLILTN 123 (221)
Q Consensus 115 ~Ga~V~~v~ 123 (221)
.|++|..-+
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999998654
No 267
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=64.69 E-value=83 Score=26.30 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=39.3
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.+.+.++...+|...+|..|.+++..|+.+|.+.+++.. +..+...++.+|++-+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 345667777677777899999999999999998655542 3455556667776443
No 268
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.69 E-value=79 Score=25.99 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=36.6
Q ss_pred CeEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE--EEEeCCCCChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSG--NTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ--LILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assG--N~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~--V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
+..+|+..++ .-|.++|......|.++++.-.........+.+...... .+.+|-. +.++..+...+..++
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVA-EDASIDAMFAELGKV 81 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCC-CHHHHHHHHHHHHhh
Confidence 5556666654 678888888888898765543322112334444432222 2333332 234444444444443
No 269
>PRK06484 short chain dehydrogenase; Validated
Probab=64.60 E-value=1.1e+02 Score=27.81 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCee
Q 043209 67 TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSF 146 (221)
Q Consensus 67 ~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~ 146 (221)
..++..+|+.+++.-|.++|......|.+++++-.. .....+..+..|.++..+..+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~D--------------------- 59 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRN--VERARERADSLGPDHHALAMD--------------------- 59 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHhCCceeEEEec---------------------
Q ss_pred ecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccC
Q 043209 147 NPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIG 184 (221)
Q Consensus 147 ~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G 184 (221)
....+ ....+..++.+++ +.+|.+|..+|
T Consensus 60 -------~~~~~-~~~~~~~~~~~~~-g~iD~li~nag 88 (520)
T PRK06484 60 -------VSDEA-QIREGFEQLHREF-GRIDVLVNNAG 88 (520)
T ss_pred -------cCCHH-HHHHHHHHHHHHh-CCCCEEEECCC
No 270
>PLN00175 aminotransferase family protein; Provisional
Probab=64.33 E-value=1e+02 Score=27.26 Aligned_cols=83 Identities=8% Similarity=-0.014 Sum_probs=43.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
|+..+++..+..++..+- ++-.-.|++++-.-..-...++..|++++.++-.. ++.-..+..++........++++..
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p 196 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTP 196 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCC
Confidence 666666666665555443 33233455554334555667788999999886421 1221122222322333356777655
Q ss_pred CCCcc
Q 043209 152 KNPAN 156 (221)
Q Consensus 152 ~n~~~ 156 (221)
+||..
T Consensus 197 ~NPtG 201 (413)
T PLN00175 197 HNPTG 201 (413)
T ss_pred CCCCC
Confidence 56553
No 271
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=63.99 E-value=62 Score=29.46 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHcCCCC-CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 50 DRIAFSMIKDAEEKGLIT-PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~-~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
-++..+.+..+.+..... .|+ +|+..+.||-|..+|.....+|.+++.+..
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk-~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGK-TVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCC-EEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 357777777765543222 344 589999999999999999999998886653
No 272
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=63.99 E-value=76 Score=25.57 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=26.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+.++|.-|.+++......|.+++++-.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 45688889999999999998888988766643
No 273
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.86 E-value=74 Score=25.40 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC-----CCcEEEEEeCC
Q 043209 166 PEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKN-----PEIKVYGVEPA 211 (221)
Q Consensus 166 ~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~-----~~~kvigVe~~ 211 (221)
.++++.- +++|+|++. +...+.|+..++++.. .++.|++++..
T Consensus 166 ~~~l~~~-~~~~~i~~~--~~~~a~~~~~~l~~~~~~~~p~di~i~~~d~~ 213 (266)
T cd06278 166 RRLLASR-PRPDAIFCA--NDLLAIGVMDAARQEGGLRVPEDVSVIGFDDI 213 (266)
T ss_pred HHHHhcC-CCCCEEEEc--CcHHHHHHHHHHHHhcCCCCccceEEEEeCCh
Confidence 3444432 468988876 4556778999998753 26889999754
No 274
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.77 E-value=52 Score=31.18 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=39.6
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--------------S----LEKRIILQAYGAQLIL 121 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~V~~ 121 (221)
..|+.-++|..|.+.|+..++.|.++++|-.... + ...++.++.+|.+++.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 379 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHL 379 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEc
Confidence 4488899999999999999999999888853321 1 1246678899998875
No 275
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=63.65 E-value=60 Score=26.85 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCee---ecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccC
Q 043209 108 KRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSF---NPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIG 184 (221)
Q Consensus 108 ~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G 184 (221)
-++.....|..|.+++.. -....+.++.+.++. +.- +-++|.+ .+ -...+..+|.+ ..+|.|+|+.|
T Consensus 97 ll~~~~~~~~~v~llG~~--~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~---~~-e~~~i~~~I~~---s~~dil~VglG 166 (243)
T PRK03692 97 LMARAGKEGTPVFLVGGK--PEVLAQTEAKLRTQW-NVNIVGSQDGYFT---PE-QRQALFERIHA---SGAKIVTVAMG 166 (243)
T ss_pred HHHHHHhcCCeEEEECCC--HHHHHHHHHHHHHHh-CCEEEEEeCCCCC---HH-HHHHHHHHHHh---cCCCEEEEECC
Confidence 344455678899999875 223334444455554 322 2233332 21 11223333332 35899999999
Q ss_pred chh
Q 043209 185 TGG 187 (221)
Q Consensus 185 ~Gg 187 (221)
+-=
T Consensus 167 ~Pk 169 (243)
T PRK03692 167 SPK 169 (243)
T ss_pred CcH
Confidence 753
No 276
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=63.58 E-value=42 Score=29.25 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=37.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
.++..++|..+..++..+...+-.-.|++|...-......++..|++++.++.+
T Consensus 48 ~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 48 KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 477777887776665544323333467888776777778888999999998754
No 277
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=63.45 E-value=71 Score=25.88 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=41.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIIL-QAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
++..+|+.++|.-|.+++......|.+++++-.. ..+.+.+ +.++.++..+..+ .+.++..+...+..++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 3567888888999999999998899986665432 3333333 2345444433322 1334444455555444
No 278
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=63.33 E-value=74 Score=25.39 Aligned_cols=54 Identities=31% Similarity=0.488 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
..+.++.+.+|...++ .|.+++..++..|.+.+++.+. ..+.+.++.+|++.+.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 183 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI 183 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec
Confidence 3345666656665556 9999999999999776555433 4566667778865443
No 279
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=63.27 E-value=92 Score=26.33 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=47.8
Q ss_pred CCCCCeEE--EEeCCCCCCCchhhHHHHHHHHHHHHc-CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC
Q 043209 29 DGCKARIA--AKLEMMEPCSSVKDRIAFSMIKDAEEK-GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS 105 (221)
Q Consensus 29 ~~~g~~i~--~K~E~~~ptGs~K~R~a~~~~~~a~~~-g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~ 105 (221)
+..|..++ .++|+. ...+-.-.+...+..+.+. +.--.++ +++.-+.|+.|.++|..++.+|.+++++-+.
T Consensus 110 ~~~gi~v~~~~~~~~v--a~~n~~~~Ae~ai~~al~~~~~~l~gk-~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~--- 183 (287)
T TIGR02853 110 ADAGVKLIELFERDDV--AIYNSIPTAEGAIMMAIEHTDFTIHGS-NVMVLGFGRTGMTIARTFSALGARVFVGARS--- 183 (287)
T ss_pred HHCCCeEEEEEeccce--EEEccHhHHHHHHHHHHHhcCCCCCCC-EEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---
Confidence 34455544 333332 2233334455555555543 2111234 4788888999999999999999876655432
Q ss_pred HHHHHHHHHcCCE
Q 043209 106 LEKRIILQAYGAQ 118 (221)
Q Consensus 106 ~~~~~~l~~~Ga~ 118 (221)
..+......+|.+
T Consensus 184 ~~~~~~~~~~g~~ 196 (287)
T TIGR02853 184 SADLARITEMGLI 196 (287)
T ss_pred HHHHHHHHHCCCe
Confidence 3344444555654
No 280
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=63.24 E-value=89 Score=26.14 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
.+.+.++...+|. .+|..|.++...|+.+|.+.++ +-.+.+..+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCc
Confidence 3455667776664 5789999999999999998543 3223346677788889974
No 281
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=63.12 E-value=1e+02 Score=27.21 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=39.8
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHc--------CCEEEEeC
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGY--KLILVMPAFMSLEKRIILQAY--------GAQLILTN 123 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~--~~~ivvp~~~~~~~~~~l~~~--------Ga~V~~v~ 123 (221)
...+.+|.+.+|...+|..|......|+.+|. ..++++ +.+..+++.++.+ |++...++
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 34566777766666679999999999998875 223333 3467777777776 77654444
No 282
>PRK07677 short chain dehydrogenase; Provisional
Probab=63.06 E-value=70 Score=25.72 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=41.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLN 140 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~ 140 (221)
++.+|+..+|..|.+++......|.+++++...... ......++..+.++..+..+ .+.++..+...+..+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 456888888999999999998899976555433211 11223344456666554332 123344444444443
No 283
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=62.87 E-value=76 Score=25.47 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=38.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCCC-CChhHHHHHHHHHHh
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIIL-QAYGAQLILTNAE-MGIDEEFRIVEELLN 140 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~ 140 (221)
.+|+..+|..|.+++......|.+++++... ..++..+ ...+.++..+..+ .+.++..+...++.+
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHH
Confidence 4788889999999999998899987665432 3333332 2345555544332 123333444444433
No 284
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.75 E-value=69 Score=25.54 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=36.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|.-|.+++......|.+++++...... ......++..+.++..+..
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 59 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFAC 59 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 566888889999999999988889887766533211 1122334555666655544
No 285
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=62.71 E-value=85 Score=26.43 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcC-CEEEEeC
Q 043209 51 RIAFSMIKDAEEKGLITPGKTVLIEC-TSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYG-AQLILTN 123 (221)
Q Consensus 51 R~a~~~~~~a~~~g~~~~g~~~vv~a-ssGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~G-a~V~~v~ 123 (221)
++...++.++.+.|. ..++.. -.=.+...+-.+|+++|+..+.+++.+++..+++.+.... .-|+.++
T Consensus 109 ~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 109 YGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred hhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 455556666666663 224443 2344555666677777777777776666666666665555 5555554
No 286
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=62.65 E-value=91 Score=26.06 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.+.+.++.+.+|....|..|.++...|+.+|++.+.+.+ +..+...++.+|++-+
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 455667777666667899999999999999998655543 3555666677887433
No 287
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.63 E-value=73 Score=28.23 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=61.0
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhhCCC-eeec
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNKIPT-SFNP 148 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~~~~-~~~~ 148 (221)
+..+..+||-.+..+|.-+-..|=.-.|++|.-+.....+.+...||+.++||-+. ++.=..+..++.-.+... -+.+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipV 129 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPV 129 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEe
Confidence 34777788888777777654455556889999889999999999999999998652 233122233333233223 3455
Q ss_pred CCCCCCccHHHHHhhHHH
Q 043209 149 HQFKNPANPKTHYETTGP 166 (221)
Q Consensus 149 ~~~~n~~~~~~g~~t~~~ 166 (221)
+-+.++..++ ....++.
T Consensus 130 hl~G~~~dm~-~i~~la~ 146 (374)
T COG0399 130 HLAGQPCDMD-AIMALAK 146 (374)
T ss_pred hhccCCCCHH-HHHHHHH
Confidence 6667777665 4444443
No 288
>PLN02702 L-idonate 5-dehydrogenase
Probab=62.55 E-value=62 Score=27.83 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=41.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++...+|. +.|..|.++...++.+|.+.++.+.. +..+.+.++.+|++.+.
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34456667665555 67899999999999999976555533 46777778889987654
No 289
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=62.47 E-value=68 Score=25.68 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=36.2
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 124 (221)
+.+|+.++|..|.+++......|.+++++...... ....+.++..|.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 56 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKL 56 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45788888999999999998899876665433211 1233456667777765543
No 290
>PRK08265 short chain dehydrogenase; Provisional
Probab=62.39 E-value=84 Score=25.53 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=40.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKR-IILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~-~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|--|.+++......|.+++++-.. ..+. +..+..+.++..+..+- +.++..+..++..++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDID---ADNGAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 566888888999999999998899976665432 2222 22334466665543321 233344444444443
No 291
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=62.22 E-value=75 Score=25.61 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=42.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL-EKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLN 140 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~ 140 (221)
++.+|+.++|.-|.+++......|.+++++....... .....++..|.++..+..+- +.++..+...++.+
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5778888889999999998888898877665432211 22344555676665443321 23333444444433
No 292
>PRK06949 short chain dehydrogenase; Provisional
Probab=62.21 E-value=64 Score=25.90 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=27.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
+++.+|+.++|.-|.+++......|.+++++...
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3677888889999999999998899986666543
No 293
>PRK12744 short chain dehydrogenase; Provisional
Probab=62.15 E-value=72 Score=25.75 Aligned_cols=71 Identities=24% Similarity=0.185 Sum_probs=42.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-CCH----HHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAF-MSL----EKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLN 140 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~-~~~----~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~ 140 (221)
+..+|+..+|.-|.++|......|.+++++.... ... ...+.++..+.++..+..+- +.++..+...+..+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5668888889999999999888899866665321 112 22344556677766554321 23344444444433
No 294
>PRK09134 short chain dehydrogenase; Provisional
Probab=62.04 E-value=83 Score=25.38 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=37.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|.-|.+++......|.+++++...+.. ......++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 567889999999999999998999987776543211 122334455677776554
No 295
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=62.03 E-value=79 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=26.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+.++|..|.+++......|.+++++..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 56688889999999999999889998776643
No 296
>PRK12831 putative oxidoreductase; Provisional
Probab=61.99 E-value=47 Score=30.11 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=38.3
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC---C--CHHHHHHHHHcCCEEEE
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAF---M--SLEKRIILQAYGAQLIL 121 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~---~--~~~~~~~l~~~Ga~V~~ 121 (221)
.|+.-++||.|.-+|..+.++|.+++++.... . ....++.++..|.+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 48999999999999999999999988876542 1 23444566778887764
No 297
>PRK13243 glyoxylate reductase; Reviewed
Probab=61.83 E-value=87 Score=27.10 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=62.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
+|..-+.|+.|.++|..++.+|++++++-+.. ... .....|+.. . +++ ++.++. +...+.-
T Consensus 152 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~--~----~l~-------ell~~a-DiV~l~l- 212 (333)
T PRK13243 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY--R----PLE-------ELLRES-DFVSLHV- 212 (333)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe--c----CHH-------HHHhhC-CEEEEeC-
Confidence 48888889999999999999999877665542 221 122344321 1 122 233333 4444432
Q ss_pred CCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHH--HHHHHHHh
Q 043209 152 KNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVS--GVGNFLKK 198 (221)
Q Consensus 152 ~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~--Gi~~~~~~ 198 (221)
|.+.+ -...+..|.++++ +++.+++-++.|+..- .+..+++.
T Consensus 213 --P~t~~-T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 213 --PLTKE-TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred --CCChH-HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 22222 2344667888887 4789999999998763 44555543
No 298
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=61.81 E-value=52 Score=29.72 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCeEEEeeCC---ChHHHHHHHHHHHc-CCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 043209 69 GKTVLIECTS---GNTGIGMACFAAAK-GYKLILVMPAFM--SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 69 g~~~vv~ass---GN~~~alA~~a~~~-g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 123 (221)
|.+ |+..+- +|.+.|+...+..+ |++++++.|+.. +...++.++..|..|..++
T Consensus 241 G~k-Ia~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 241 GAH-IALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred CCE-EEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 444 444444 69999999996665 999999999863 4444555666677666543
No 299
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=61.75 E-value=63 Score=28.65 Aligned_cols=129 Identities=14% Similarity=0.106 Sum_probs=70.6
Q ss_pred CCchhhHHHHHHHHHH----HHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 45 CSSVKDRIAFSMIKDA----EEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 45 tGs~K~R~a~~~~~~a----~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.|.+..-.|.+.+..+ ++.|..-.|+ +|..-+.||-|..+|..++.+|++++.+=|..... +....
T Consensus 88 pg~na~aVAE~~~~~lL~l~r~~g~~L~gk-tvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~~ 157 (378)
T PRK15438 88 PGCNAIAVVEYVFSSLLMLAERDGFSLHDR-TVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEGD 157 (378)
T ss_pred CCcCchHHHHHHHHHHHHHhccCCCCcCCC-EEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------ccccc
Confidence 3555666666665543 3334333344 47888889999999999999999888875432100 10000
Q ss_pred EeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCc-cHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHH
Q 043209 121 LTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPA-NPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTV--SGVGNFLK 197 (221)
Q Consensus 121 ~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~-~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~--~Gi~~~~~ 197 (221)
+. -..++.++. +.+.++--.++. ... -+.-+..+.++++ +++.+++-+|=|+.+ ..+..+++
T Consensus 158 -------~~----~L~ell~~s-DiI~lh~PLt~~g~~~-T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 158 -------FR----SLDELVQEA-DILTFHTPLFKDGPYK-TLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred -------cC----CHHHHHhhC-CEEEEeCCCCCCcccc-cccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHH
Confidence 11 112333333 333322111111 011 1234667788887 468899999888875 45555554
Q ss_pred h
Q 043209 198 K 198 (221)
Q Consensus 198 ~ 198 (221)
.
T Consensus 223 ~ 223 (378)
T PRK15438 223 E 223 (378)
T ss_pred h
Confidence 4
No 300
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=61.64 E-value=1.1e+02 Score=26.67 Aligned_cols=84 Identities=17% Similarity=0.088 Sum_probs=43.8
Q ss_pred EEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC--CChhHHHHHHHHHHhhCCCeeecC
Q 043209 73 LIECTSGNTGIGMACFAAA-KGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE--MGIDEEFRIVEELLNKIPTSFNPH 149 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~ 149 (221)
|+..+++..+..++..+-. -|=...|++|.-.-..-....+..|++++.++-+ .++.-..+..++...+....+|++
T Consensus 93 i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~ 172 (393)
T TIGR03538 93 VLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVC 172 (393)
T ss_pred EEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEe
Confidence 6666666776655544322 2433457776643333345578899999988642 123211122222222233667775
Q ss_pred CCCCCcc
Q 043209 150 QFKNPAN 156 (221)
Q Consensus 150 ~~~n~~~ 156 (221)
...||-.
T Consensus 173 ~p~NPtG 179 (393)
T TIGR03538 173 SPGNPTG 179 (393)
T ss_pred CCCCCcC
Confidence 4455543
No 301
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=61.51 E-value=80 Score=25.48 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=35.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|.-|.+++......|.+++++...... ......++..+.++..+..
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 68 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAA 68 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 566888888999999999888889976555432111 1122334556777766544
No 302
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.49 E-value=87 Score=25.45 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred CeEEEeeC--CChHHHHHHHHHHHcCCeEEEEe
Q 043209 70 KTVLIECT--SGNTGIGMACFAAAKGYKLILVM 100 (221)
Q Consensus 70 ~~~vv~as--sGN~~~alA~~a~~~g~~~~ivv 100 (221)
+..+|+.+ ++--|.++|......|.++++.-
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEec
Confidence 55577776 67788888888777888766543
No 303
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=61.25 E-value=80 Score=26.01 Aligned_cols=52 Identities=29% Similarity=0.398 Sum_probs=37.4
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
+.+.++...+|...+|..|.+++..|+.+|.+.+.+.+. .+.+.++.+|++-
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~~ 190 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGADE 190 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCCE
Confidence 345566675666667999999999999999986655532 5566667788743
No 304
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=61.02 E-value=93 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 68 ~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.+++ ++.-+.|..|.+++..++.+|.+++++-.. ..+....+.+|++.+
T Consensus 151 ~g~k-vlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 151 HGSN-VLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 3444 777778999999999999999866665333 445666677887654
No 305
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.91 E-value=81 Score=24.91 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=28.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 566888899999999999999999988777654
No 306
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.69 E-value=71 Score=25.47 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=37.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+.++|--|.+++......|.++++...... .......++..|.++..+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 56688888899999999988888998766553221 1233455666777766544
No 307
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.48 E-value=95 Score=25.55 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.++...+|...+|..|.++...|+.+|.+.+.+.+ +..+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR---SPERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 34556677666666799999999999999998555543 34556666778875443
No 308
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=60.43 E-value=1e+02 Score=26.52 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
+...+.++.+.+|. +.|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34456777775665 67999999999999999875555432 56667777778874
No 309
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=60.41 E-value=80 Score=27.35 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
+...+.++.+.+| ...|..|.+++..|+.+|.+.++++ +.+..+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 3345667777556 5679999999999999998544444 33577888888899854
No 310
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=60.37 E-value=75 Score=27.25 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=43.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHH-hhCCCeeecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELL-NKIPTSFNPHQF 151 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 151 (221)
|+..+++..+..++..+- .+-.-.|++|.-.-..-....+..|++++.++-+.++.-..+..++.. ......+++...
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p 162 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYP 162 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCC
Confidence 666666666555544332 222234556554445556678899999999875422221122222322 223466777544
Q ss_pred CCCc
Q 043209 152 KNPA 155 (221)
Q Consensus 152 ~n~~ 155 (221)
.||.
T Consensus 163 ~NPt 166 (356)
T PRK04870 163 NNPT 166 (356)
T ss_pred CCCC
Confidence 5554
No 311
>PRK05872 short chain dehydrogenase; Provisional
Probab=60.18 E-value=83 Score=26.25 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=41.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHc--CCEEEE--eCCCCChhHHHHHHHHHHhh
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIIL-QAY--GAQLIL--TNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~--Ga~V~~--v~~~~~~~~~~~~a~~~~~~ 141 (221)
+++.+|+.++|.-|.+++......|.+++++-.. ..+++.+ +.+ +.+++. ++-. +.++..+...+..++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADVT-DLAAMQAAAEEAVER 82 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecCC-CHHHHHHHHHHHHHH
Confidence 3567888899999999999999999876555432 3333222 223 355555 4433 334444555555444
No 312
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=60.06 E-value=59 Score=26.98 Aligned_cols=68 Identities=24% Similarity=0.175 Sum_probs=27.9
Q ss_pred HHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccC
Q 043209 110 IILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIG 184 (221)
Q Consensus 110 ~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G 184 (221)
+.++..||++.+.--. +.-..+.++++++. +..++-+.|-. +-+ ....+..+|-++. +++|.+|-+++
T Consensus 26 k~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~-~d~-~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 26 KALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVT-NDE-SIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCC-CHH-HHHHHHHHHHHhh-CcccEEEEEec
Confidence 3445555555554221 12334445555554 22222232211 111 3333444444444 34555555544
No 313
>PRK05855 short chain dehydrogenase; Validated
Probab=60.01 E-value=1.2e+02 Score=27.69 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=30.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEe
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILT 122 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v 122 (221)
.+.+|+.++|--|.+++......|.+++++...... ....+.++..|.++..+
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 369 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAY 369 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Confidence 455777777888888888777778875554332111 11223345556555443
No 314
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=59.89 E-value=47 Score=25.44 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=39.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 123 (221)
.|+..++|+.|...+..+..+|.+.+++- ....+++..+..++..+.++
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEET
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEc
Confidence 48888999999999999999999865553 35777888889999888775
No 315
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=59.86 E-value=1e+02 Score=26.94 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=33.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
++..++|..+..++..+-..+-.-.|++|...-......+...|++++.++.
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 5556666666555554432222245777776555666777889999998874
No 316
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=59.83 E-value=61 Score=26.23 Aligned_cols=52 Identities=21% Similarity=0.072 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 51 RIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 51 R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
|+..+.+..+.+.-.......+|+.-+.||-|..+|......|.+.+.+...
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 4566666665443212222345999999999999999999999988887754
No 317
>PLN02342 ornithine carbamoyltransferase
Probab=59.80 E-value=57 Score=28.59 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCC-EEEEe
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGA-QLILT 122 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga-~V~~v 122 (221)
+.|.+ .|.+..+..-..|.+.++..+++++|++++++.|+.. +...++.++.+|. ++...
T Consensus 188 ~~G~l-~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 188 HIGRL-EGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT 250 (348)
T ss_pred HhCCc-CCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE
Confidence 34543 3444334444468999999999999999999999863 3444555565664 55444
No 318
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=59.72 E-value=93 Score=25.20 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=41.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQA-YGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
+..+|+..+|..|.+++......|.+++++-. +..+++.+.. .+.++..+..+ .+.++..+..++..++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r---~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDK---SAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 56788888899999999999889998766532 2334444433 45555544322 1233334444444443
No 319
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=59.71 E-value=1.1e+02 Score=25.99 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+.++.. |+...+|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+
T Consensus 173 ~~~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 224 (350)
T cd08240 173 LVADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVV 224 (350)
T ss_pred CCCCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEE
Confidence 334555 44446799999999999999996555553 34667777777887544
No 320
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.64 E-value=78 Score=26.85 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=36.8
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 67 TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 67 ~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.++...+|. ..|..|.+++..|+.+|.+.+++. ..+..+....+.+|++-+
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 456665664 468999999999999998544555 345677777788887544
No 321
>PRK06128 oxidoreductase; Provisional
Probab=59.55 E-value=1e+02 Score=25.68 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=45.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC-CC--CHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA-FM--SLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~-~~--~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|..|.+++......|.++++.... .. .....+.++..|.++..+..+- +.++..+...+..++
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999998899988765422 21 1223445666787776554331 233444444444443
No 322
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=59.44 E-value=63 Score=27.00 Aligned_cols=52 Identities=13% Similarity=-0.040 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 50 DRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
-|+..+.+..+.+.-.......+|+.-+.||-|..+|.....+|.+++.+..
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3577777777655433332224599999999999999999999999886654
No 323
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=59.43 E-value=73 Score=26.74 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=35.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAK-GYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~-g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.+|...+|..|.++...|+.+ |.+++++... ..+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 567666666799999999999987 9886655432 4566666778875443
No 324
>PRK08068 transaminase; Reviewed
Probab=59.41 E-value=1.2e+02 Score=26.38 Aligned_cols=82 Identities=10% Similarity=-0.042 Sum_probs=42.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHhhCCCeeecCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM--GIDEEFRIVEELLNKIPTSFNPHQ 150 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~ 150 (221)
|+..+++..+..++..+ ..+-.-.|++|.-.-..-...++..|++++.++-+. ++....+..++...+....+++..
T Consensus 97 i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~ 175 (389)
T PRK08068 97 VAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNY 175 (389)
T ss_pred EEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEEC
Confidence 66666666665554332 233334566665434444556778999999886431 232111222222223346777753
Q ss_pred CCCCc
Q 043209 151 FKNPA 155 (221)
Q Consensus 151 ~~n~~ 155 (221)
-+||-
T Consensus 176 P~NPT 180 (389)
T PRK08068 176 PNNPT 180 (389)
T ss_pred CCCCC
Confidence 34554
No 325
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=59.39 E-value=47 Score=29.07 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=34.6
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 67 TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 67 ~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.++.+ |+..++|..|.+++..|+.+|.+.+++.+. +..+.+.++.+|++.+
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~ 227 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSF 227 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEE
Confidence 35666 454567999999999999999975544332 2334556677888644
No 326
>PRK07904 short chain dehydrogenase; Provisional
Probab=58.99 E-value=97 Score=25.16 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=41.4
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCC--HHHHHHHHHcCC-EEEE--eCCCCChhHHHHHHHHHH
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAK-GYKLILVMPAFMS--LEKRIILQAYGA-QLIL--TNAEMGIDEEFRIVEELL 139 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~-g~~~~ivvp~~~~--~~~~~~l~~~Ga-~V~~--v~~~~~~~~~~~~a~~~~ 139 (221)
+++.+|+.++|-.|.++|...... |.+++++...... ....+.++..|. ++.. ++-. +.++..+..++..
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~-~~~~~~~~~~~~~ 83 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDAL-DTDSHPKVIDAAF 83 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCC-ChHHHHHHHHHHH
Confidence 356788888899999999887766 4887777644322 223445655553 4544 4432 2344444444443
No 327
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=58.92 E-value=79 Score=27.12 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=41.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChh-HHHHHHHHHHhhCCCeeecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGID-EEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
|+..+++..+..++..+- ++-.-.|+++.-.-..-....+..|++++.++.+.++. +.....+.+.......+++...
T Consensus 79 i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p 157 (351)
T PRK14807 79 IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNP 157 (351)
T ss_pred EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCC
Confidence 666666555555444332 22223455554333445556788999999886542221 1122222222223467777544
Q ss_pred CCCc
Q 043209 152 KNPA 155 (221)
Q Consensus 152 ~n~~ 155 (221)
.||.
T Consensus 158 ~NPt 161 (351)
T PRK14807 158 NNPT 161 (351)
T ss_pred CCCC
Confidence 5553
No 328
>PRK08177 short chain dehydrogenase; Provisional
Probab=58.90 E-value=88 Score=24.66 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=38.3
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHH
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEEL 138 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~ 138 (221)
+.+|+..+|..|.+++......|.+++++.........++.+ .+..+..++-. +.++..+...++
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~D~~-d~~~~~~~~~~~ 67 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL--PGVHIEKLDMN-DPASLDQLLQRL 67 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc--cccceEEcCCC-CHHHHHHHHHHh
Confidence 458888899999999999888899877766443233233222 23444444432 233444444444
No 329
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=58.76 E-value=91 Score=26.27 Aligned_cols=58 Identities=26% Similarity=0.243 Sum_probs=39.2
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-SLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~~~~~~~l~~~Ga~V~~ 121 (221)
..+.++.+.+|...+|..|.+++..|+.+|.++++...... ...+.+.++.+|++-+.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 34566666555556699999999999999998776664321 12455666677875544
No 330
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=58.53 E-value=1.1e+02 Score=25.50 Aligned_cols=52 Identities=35% Similarity=0.441 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
..+.++.+.+|...+|..|.+++..++.+|.+.+++... ..+.+.++.+|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 456677776777778999999999999999987666532 3344445555653
No 331
>PRK10490 sensor protein KdpD; Provisional
Probab=58.52 E-value=2e+02 Score=28.61 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=63.3
Q ss_pred CeEEEeeCCChHHHHH----HHHHHHcCCeEEEE-ecC-C---CCH-------HHHHHHHHcCCEEEEeCCCCChhHHHH
Q 043209 70 KTVLIECTSGNTGIGM----ACFAAAKGYKLILV-MPA-F---MSL-------EKRIILQAYGAQLILTNAEMGIDEEFR 133 (221)
Q Consensus 70 ~~~vv~assGN~~~al----A~~a~~~g~~~~iv-vp~-~---~~~-------~~~~~l~~~Ga~V~~v~~~~~~~~~~~ 133 (221)
.+.+|+-+++.++..+ +..|..++-+.+++ +-. . .+. ..++..+.+||+++.+.++ +..+
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEK 326 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHH
Confidence 3456777776666444 34455567776654 422 1 111 2244567899999888764 3334
Q ss_pred HHHHHHhhCC-CeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccC
Q 043209 134 IVEELLNKIP-TSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIG 184 (221)
Q Consensus 134 ~a~~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G 184 (221)
...+++++.. ..+.+.+...... ....++...+.+.. +.+|..|+|..
T Consensus 327 ~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 327 AVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 4456666652 3455655543322 12357888888887 67888888644
No 332
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=58.43 E-value=85 Score=26.28 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=38.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
+...+.++...+| .+.|..|.+++..++..|.+.+++.+. ..+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 4455667766555 467899999999999999876555443 35666667788753
No 333
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.32 E-value=95 Score=24.84 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
+..+|+.++|.-|.+++..-...|.+++++...... ......++..+.++..+..+- +.++..+...++.++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAA 77 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 356888889999999999988889887776533211 223444555676666554321 233344444444443
No 334
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=58.08 E-value=82 Score=27.22 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=34.9
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+.+.+|.+.+| .++|..|.++...|+.+|.+.+++... +..+....+.+|++.+
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~v 232 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSF 232 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEE
Confidence 33456666444 677999999999999999975554332 2223344456787544
No 335
>PRK07326 short chain dehydrogenase; Provisional
Probab=58.03 E-value=92 Score=24.59 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=26.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
+..+|+.++|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 56688888999999999998888998766653
No 336
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=57.94 E-value=99 Score=24.97 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=44.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
++.+|+.++|.-|.+++......|.++++....... ....+.++..|.++..+..+ .+.++..+...+..++
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 567888899999999999988899887766553322 22334556667777654332 1233333444444443
No 337
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=57.91 E-value=70 Score=27.39 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH-HHHcCCEEEEeC
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRII-LQAYGAQLILTN 123 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~-l~~~Ga~V~~v~ 123 (221)
+.|.+. |.+..+..-.+|..+|++..++.+|++++++.|+.. +...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 345443 344333444578999999999999999999988863 2233333 455677666543
No 338
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=57.87 E-value=1.2e+02 Score=25.93 Aligned_cols=110 Identities=11% Similarity=-0.033 Sum_probs=53.2
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHcCCe---EEEEecCCCCHHHHHHHHHcCCEE
Q 043209 44 PCSSVKDRIAFSMIKDAEEKGL-ITPGKTVLIECTSGNTGIGMACFAAAKGYK---LILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 44 ptGs~K~R~a~~~~~~a~~~g~-~~~g~~~vv~assGN~~~alA~~a~~~g~~---~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
|.|.-..|.+..-... ...|. +.++.. |+..+++..+.-++..+- ++-. -.|++|.-.-..-...++.+|+++
T Consensus 35 ~~G~~~lr~aia~~~~-~~~g~~~~~~~~-Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~ 111 (350)
T TIGR03537 35 ALGTKALREAISGWFE-RRFGVKLDPDAQ-VLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEP 111 (350)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCCCCc-EEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEE
Confidence 4566666644332221 22242 223213 666665555444333222 2221 256666544455566678899999
Q ss_pred EEeCCC--CChhHHHHHHHHHHhhCCCeeecCCCCCCcc
Q 043209 120 ILTNAE--MGIDEEFRIVEELLNKIPTSFNPHQFKNPAN 156 (221)
Q Consensus 120 ~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~ 156 (221)
+.++-+ .++.-..+..++...+....+|+....||..
T Consensus 112 ~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG 150 (350)
T TIGR03537 112 TAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTG 150 (350)
T ss_pred EEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcC
Confidence 988643 1231112222222233346777765555544
No 339
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=57.84 E-value=75 Score=27.53 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=40.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFK 152 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 152 (221)
|+..+++..+..+...+- ++=.-.|+++.-.-..-...++..|.+++.++.+.++.-..+..++..++....+++....
T Consensus 91 i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~ 169 (371)
T PRK05166 91 IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPS 169 (371)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCC
Confidence 665665555554443332 2222244555433445566778899999988653221111122222223334667765445
Q ss_pred CCc
Q 043209 153 NPA 155 (221)
Q Consensus 153 n~~ 155 (221)
||-
T Consensus 170 NPt 172 (371)
T PRK05166 170 NPV 172 (371)
T ss_pred CCC
Confidence 553
No 340
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=57.83 E-value=1.1e+02 Score=25.68 Aligned_cols=54 Identities=24% Similarity=0.349 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
..+.++...+|. ..|..|.++...++.+|.+.+++.+ +..+.+.++.+|++-+.
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVV 211 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEe
Confidence 445666665665 5677999999999999998655543 34566666778876544
No 341
>PRK08912 hypothetical protein; Provisional
Probab=57.67 E-value=1.3e+02 Score=26.16 Aligned_cols=52 Identities=10% Similarity=-0.017 Sum_probs=32.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~ 124 (221)
.|+..+++..+..++..+.. +-.-.|++|...-..-...++.+|++++.++.
T Consensus 89 ~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 89 EVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 36777777777665555432 22234555554444555667899999988764
No 342
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=57.67 E-value=1.2e+02 Score=25.97 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=40.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGY-KLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~-~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
|+...++..+..++..+- .+- +-.|+++.-.-..-...++.+|++++.++-+.++.-..+...+... ....+|+..-
T Consensus 77 I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~~~lv~l~nP 154 (351)
T PRK01688 77 VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-GVKVVYVCSP 154 (351)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-CCcEEEEeCC
Confidence 666666666655555442 222 1345554433344456678899999988653233211222222222 3356777533
Q ss_pred CCC
Q 043209 152 KNP 154 (221)
Q Consensus 152 ~n~ 154 (221)
+||
T Consensus 155 nNP 157 (351)
T PRK01688 155 NNP 157 (351)
T ss_pred CCC
Confidence 444
No 343
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.63 E-value=1.2e+02 Score=26.61 Aligned_cols=127 Identities=18% Similarity=0.150 Sum_probs=74.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGY-KLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~-~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
++.-++|..+..+|..++..|- +.-++=..++..+++.+.-..+..+..-... ++ .+...|.+.++.+
T Consensus 7 vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~----ea-------hr~leg~~~id~~ 75 (431)
T COG4408 7 VLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQG----EA-------HRQLEGSVTIDCY 75 (431)
T ss_pred eeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEecc----HH-------HHhhcCceehhHH
Confidence 6777889999999999988763 3334445566777788888889996654332 11 1111245555544
Q ss_pred -CCCccHHHHH--------hhHHHHHHHhhCC----CCCEEEEc---cCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 043209 152 -KNPANPKTHY--------ETTGPEIWEGTRG----QVDIFVSG---IGTGGTVSGVGNFLKKKNPEIKVYGVEPAES 213 (221)
Q Consensus 152 -~n~~~~~~g~--------~t~~~Ei~~q~~~----~~d~vv~p---~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~s 213 (221)
+++.+...-+ ....++.++|+++ .+..++.= .|+++++ ...+.+.++++.||...+.-+
T Consensus 76 ~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv---~~~mnk~~~daeViS~SsY~~ 150 (431)
T COG4408 76 IKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLV---QNLMNKAGRDAEVISLSSYYA 150 (431)
T ss_pred HhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHH---HHHHhhhCCCceEEEeehhcc
Confidence 2333322111 2334577777753 24444332 3555553 455666788999988765443
No 344
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=57.55 E-value=28 Score=26.50 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=27.8
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFM 104 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~ 104 (221)
+|...+|+.|..++......|.++++++....
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 67778899999999999999999999996643
No 345
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.45 E-value=1e+02 Score=25.04 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=41.2
Q ss_pred CeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-Hc-CCEEEEe--CCCCChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTS--GNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQ-AY-GAQLILT--NAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~ass--GN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~-Ga~V~~v--~~~~~~~~~~~~a~~~~~~~ 142 (221)
+..+|+.++ +.-|.++|..-.+.|.++++.-........++.+. .. +.++..+ |-. +.++..+..++..++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVT-SDEEITACFETIKEEV 85 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCC-CHHHHHHHHHHHHHhC
Confidence 565777755 78999999998889998766543222333444332 22 4455443 433 3444555555555443
No 346
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=57.42 E-value=70 Score=27.87 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCeEEEeeCC---ChHHHHHHHH-HHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 043209 69 GKTVLIECTS---GNTGIGMACF-AAAKGYKLILVMPAFM--SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 69 g~~~vv~ass---GN~~~alA~~-a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 123 (221)
|.+ |+..+- +|.+.|++.. ++.+|++++++.|+.. +...++.++..|..+..+.
T Consensus 159 g~k-ia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 159 GMH-IAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CCE-EEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 444 444444 6889999976 5677999999999863 4555556666676665543
No 347
>PRK07324 transaminase; Validated
Probab=57.30 E-value=77 Score=27.55 Aligned_cols=82 Identities=10% Similarity=0.015 Sum_probs=41.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC--CChhHHHHHHHHHHhhCCCeeecCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE--MGIDEEFRIVEELLNKIPTSFNPHQ 150 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (221)
|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++-+ .++.-..+...+........++++.
T Consensus 83 vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~ 161 (373)
T PRK07324 83 ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINN 161 (373)
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeC
Confidence 666666666666555443 2222234444433344456678899999988643 1221111222223233345666665
Q ss_pred CCCCc
Q 043209 151 FKNPA 155 (221)
Q Consensus 151 ~~n~~ 155 (221)
..||-
T Consensus 162 p~NPt 166 (373)
T PRK07324 162 ANNPT 166 (373)
T ss_pred CCCCC
Confidence 55654
No 348
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=57.30 E-value=89 Score=24.90 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=36.1
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEK-RIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~-~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+..+|-.|.+++......|.+++++........+ ...++..+.++..+..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 356888888999999999988889987776544222222 2334455666665543
No 349
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=57.25 E-value=39 Score=27.11 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=30.2
Q ss_pred CCCccHHHHHhhHHHHH----HHhhC------CCCCEEEEccC-chhHHHHHH----HHHHhcCCCcEEEEE
Q 043209 152 KNPANPKTHYETTGPEI----WEGTR------GQVDIFVSGIG-TGGTVSGVG----NFLKKKNPEIKVYGV 208 (221)
Q Consensus 152 ~n~~~~~~g~~t~~~Ei----~~q~~------~~~d~vv~p~G-~Gg~~~Gi~----~~~~~~~~~~kvigV 208 (221)
+...++..|+.+.+.++ .+++. ..+|.+++..| +|||=+|+. ..+++.+|+..++.+
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~ 161 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISF 161 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEE
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeec
Confidence 33445656777654433 22221 35777776665 444555554 445666666655543
No 350
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.10 E-value=1.1e+02 Score=25.27 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=41.1
Q ss_pred CeEEEeeCC--ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCE-EEEeCCCCChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTS--GNTGIGMACFAAAKGYKLILVMPAFMSLEKRIIL-QAYGAQ-LILTNAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~ass--GN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~-V~~v~~~~~~~~~~~~a~~~~~~~ 142 (221)
+..+|+.++ +--|.++|......|.++++.........+++.+ +.+|.. .+.+|-. +.++..+..++..++.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~-d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVS-KPEHFKSLAESLKKDL 81 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCC-CHHHHHHHHHHHHHHc
Confidence 555676665 4678888888888899877654332222344433 344543 3444443 3455555556655543
No 351
>PRK07775 short chain dehydrogenase; Provisional
Probab=57.04 E-value=1.1e+02 Score=25.11 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=36.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+..+|..|.+++......|.+++++...... ......++..|.++..+..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 66 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPL 66 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 466888888999999999888889976665533211 1122345566777765543
No 352
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=56.95 E-value=57 Score=29.58 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=38.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM---------S---------LEKRIILQAYGAQLIL 121 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~---------~---------~~~~~~l~~~Ga~V~~ 121 (221)
..|+.-++|..|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 3599999999999999999999999888743221 1 1345678889988864
No 353
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=56.93 E-value=1.1e+02 Score=25.30 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=34.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
...+|...+|..|.++...|+.+|.+.+++.+ +..+.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 35455556699999999999999998444432 4566777778887543
No 354
>PRK07069 short chain dehydrogenase; Validated
Probab=56.90 E-value=99 Score=24.61 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=23.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
.+|+..+|..|.+++..-...|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3778888889999998887788876666543
No 355
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=56.79 E-value=99 Score=26.05 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
...+.++.+.+|. ++|..|.++...|+.+|...++.+ ..+..+...++.+|++-
T Consensus 162 ~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 162 LAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATD 215 (347)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcE
Confidence 3456677775664 568889999999999997444444 23456666777777643
No 356
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=56.76 E-value=1.2e+02 Score=25.40 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=43.9
Q ss_pred EEEEeCCCCCCC-chhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-----HHH
Q 043209 35 IAAKLEMMEPCS-SVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-----LEK 108 (221)
Q Consensus 35 i~~K~E~~~ptG-s~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-----~~~ 108 (221)
|.+.-|.-.-.| +|=.|. ..+...+.++|. ...+++...++... ..-+..|+++..+ |+... ..-
T Consensus 2 i~ir~Da~~~iG~GHv~Rc-l~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRC-LTLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHH-HHHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 455566554444 455554 333344445553 33344444444322 2346778876554 44321 134
Q ss_pred HHHHHHcCCEEEEeCCC
Q 043209 109 RIILQAYGAQLILTNAE 125 (221)
Q Consensus 109 ~~~l~~~Ga~V~~v~~~ 125 (221)
.+.++..+.+++.++.-
T Consensus 73 ~~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 73 INLLEEEKFDILIVDHY 89 (279)
T ss_pred HHHHHhcCCCEEEEcCC
Confidence 56677778899998863
No 357
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=56.73 E-value=1.2e+02 Score=25.60 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=36.9
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
...+.++.+.+|.+ .|..|.++...|+.+|++.+++.. +..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 34456667766666 789999999999999998665543 34556666677873
No 358
>PRK06836 aspartate aminotransferase; Provisional
Probab=56.73 E-value=1.4e+02 Score=26.16 Aligned_cols=82 Identities=12% Similarity=0.151 Sum_probs=41.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCC-hhHHHHHHHHHHhhCCCeeecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMG-IDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
|+..+++..+..++..+- +.-.-.|+++...-..-...++.+|++++.++.+.+ +.--.+..++..++....+++...
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p 177 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSP 177 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCC
Confidence 666666666655444332 222234555554334445567789999998875322 111122223333333456666544
Q ss_pred CCCc
Q 043209 152 KNPA 155 (221)
Q Consensus 152 ~n~~ 155 (221)
.||.
T Consensus 178 ~NPt 181 (394)
T PRK06836 178 NNPT 181 (394)
T ss_pred CCCC
Confidence 5553
No 359
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=56.68 E-value=1.3e+02 Score=25.85 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
...+.++.+.+|. ..|..|.++...|+.+|.+.++++. .+..+.+.++.+|++
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~--~~~~~~~~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVD--PVPEKLELARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHhCCe
Confidence 3456677776666 5689999999999999987444442 245555666778874
No 360
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=56.49 E-value=78 Score=26.87 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=35.6
Q ss_pred CCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 67 TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 67 ~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
.++.+.+|...+|..|.+++..|+.+|.+.+... . ..+.+.++.+|++-
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~ 201 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADA 201 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCE
Confidence 4566666666679999999999999999766544 2 25666667788743
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=56.48 E-value=66 Score=29.11 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=38.6
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--------------S----LEKRIILQAYGAQLIL 121 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~V~~ 121 (221)
.|+.-++|..|.+.|..++..|.++++|-.... + ...++.++.+|.+++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 489999999999999999999999888864321 1 1235667889988864
No 362
>PLN02623 pyruvate kinase
Probab=56.46 E-value=1.8e+02 Score=27.46 Aligned_cols=122 Identities=10% Similarity=0.066 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCeEEEEe---------cCC--CCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHhhCCCe-e
Q 043209 83 IGMACFAAAKGYKLILVM---------PAF--MSLEKRIILQAYGAQLILTNAEM----GIDEEFRIVEELLNKIPTS-F 146 (221)
Q Consensus 83 ~alA~~a~~~g~~~~ivv---------p~~--~~~~~~~~l~~~Ga~V~~v~~~~----~~~~~~~~a~~~~~~~~~~-~ 146 (221)
.-+...|+..|.++.+.. |.. +....+......|++.+..+.+. ...++.+...+.+++-... .
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 345566888899887532 332 23356777788999999887542 1234444444433322111 1
Q ss_pred e---c---CCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 147 N---P---HQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 147 ~---~---~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
+ . ....+....+ .....+.++.+.++ .. ||+.+-+|.++--++ ...|...|+++.+..
T Consensus 446 ~~~~~~~~~~~~~~~~~~-~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~lS----r~RP~~pI~avT~~~ 509 (581)
T PLN02623 446 EGTTPPNLGQAFKNHMSE-MFAFHATMMANTLG--TS-IIVFTRTGFMAILLS----HYRPSGTIFAFTNEK 509 (581)
T ss_pred cchhhhhhccccCCChHH-HHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHHH----hhCCCCCEEEECCCH
Confidence 1 0 0111111122 34556677778774 34 999999999966654 446888888887653
No 363
>PRK08264 short chain dehydrogenase; Validated
Probab=56.45 E-value=69 Score=25.36 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=26.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCC-eEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGY-KLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~-~~~ivvp 101 (221)
++.+|+.++|..|.+++......|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 5668888899999999999999998 6665553
No 364
>PLN02527 aspartate carbamoyltransferase
Probab=56.29 E-value=1.2e+02 Score=25.99 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHc-CCeEEEEecCC--CCHHHHHHHHHcCCEEEEeC
Q 043209 79 GNTGIGMACFAAAK-GYKLILVMPAF--MSLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 79 GN~~~alA~~a~~~-g~~~~ivvp~~--~~~~~~~~l~~~Ga~V~~v~ 123 (221)
+|.+.+++.++.++ |+.++++.|+. .+....+.++..|.++...+
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46899999998877 99999999986 34444555555666665543
No 365
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=56.23 E-value=1.2e+02 Score=25.48 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
..+.++...+|. ++|-.|.+++..|+.+|.+.+++.. .+..+...++.+|++-+
T Consensus 161 ~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~~ 214 (343)
T cd08235 161 AGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADYT 214 (343)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcEE
Confidence 356777776666 5688999999999999998444432 24555556666776443
No 366
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=55.94 E-value=1.1e+02 Score=24.74 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=31.7
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC--CcEEEEEeCC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNP--EIKVYGVEPA 211 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~--~~kvigVe~~ 211 (221)
...+++++- +++|+||+. +...+.|+..++++.+. ++.|+|.+-.
T Consensus 172 ~~~~~l~~~-~~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 172 VATTILQRN-PDLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred HHHHHHHhC-CCccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEecCCC
Confidence 444555543 568887755 55677789999988764 7889988765
No 367
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=55.93 E-value=1.1e+02 Score=24.90 Aligned_cols=56 Identities=30% Similarity=0.432 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
.+.+.++...+|...+|..|.+++..++.+|.+.+++. .+..+.+.++.+|++-+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEEE
Confidence 34566677756666679999999999999999855543 244556666677764433
No 368
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=55.89 E-value=94 Score=25.97 Aligned_cols=36 Identities=39% Similarity=0.480 Sum_probs=28.5
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILV 99 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~iv 99 (221)
..+.++...+|...+|..|.+++..|+.+|.+.+++
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 456677776666666999999999999999986554
No 369
>PRK05717 oxidoreductase; Validated
Probab=55.88 E-value=1e+02 Score=24.80 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=40.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
+++.+|+.++|.-|.+++......|.+++++-... ....+..+..+.+++.+..+- +.++..+...++.++
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 36778888999999999999988898776653221 111222344555555443321 233333334444443
No 370
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=55.69 E-value=19 Score=26.90 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=26.1
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAF 103 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~ 103 (221)
++..++|.-+.+++..++.+|++++++-|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4677899999999999999999999998774
No 371
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.63 E-value=1.3e+02 Score=25.52 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=38.7
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++.+.+|. ++|..|.++...|+.+|.+.++++. .+..+...++.+|++-+.
T Consensus 156 ~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~--~~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 156 RRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTD--IDPSRLEFAKELGATHTV 212 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCcEEe
Confidence 45667788776665 5678899999999999998444442 234555666667775443
No 372
>PRK13984 putative oxidoreductase; Provisional
Probab=55.60 E-value=1e+02 Score=28.89 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=38.5
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------C----HHHHHHHHHcCCEEEE
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--------------S----LEKRIILQAYGAQLIL 121 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~V~~ 121 (221)
+++ |+..++|..|.+.|...++.|++++++-.... + ...++.++.+|.+++.
T Consensus 283 ~~~-v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 283 NKK-VAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 344 77777999999999999999999998843221 1 2345678889988764
No 373
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=55.56 E-value=1.3e+02 Score=28.18 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=31.6
Q ss_pred CeEEEeeCCChHHH---HHHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcCCEE
Q 043209 70 KTVLIECTSGNTGI---GMACFAAAKGYKLILVMPAFMSLE----KRIILQAYGAQL 119 (221)
Q Consensus 70 ~~~vv~assGN~~~---alA~~a~~~g~~~~ivvp~~~~~~----~~~~l~~~Ga~V 119 (221)
.+.+|.++.||.|- .+|......|+++.|++|...... ..++++.+|..+
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 35577778877653 444445556999999987643322 345566777554
No 374
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=55.53 E-value=1.3e+02 Score=25.65 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.++.+.+|. ++|..|.+++..|+.+|.+.++++ ..+..+...++.+|++-+.
T Consensus 173 ~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~--~~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 173 GPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVI--DGSPERLELAREFGADATI 227 (361)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCCeEE
Confidence 444466665665 579999999999999999333333 2356677777888985443
No 375
>PRK07985 oxidoreductase; Provisional
Probab=55.43 E-value=1.2e+02 Score=25.33 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=42.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC-CC-CHH-HHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA-FM-SLE-KRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~-~~-~~~-~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+..+|.-|.++|......|.++++.... .. ... ..+.++..|.+++.+..+- +.++..+...+..+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999987765432 11 111 2223445676765543321 233444444444443
No 376
>PRK09072 short chain dehydrogenase; Provisional
Probab=55.42 E-value=1e+02 Score=24.90 Aligned_cols=33 Identities=39% Similarity=0.458 Sum_probs=27.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
+..+|+.++|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 566888888999999999988899987766543
No 377
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=55.35 E-value=1.4e+02 Score=25.91 Aligned_cols=83 Identities=8% Similarity=-0.085 Sum_probs=41.5
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC--CChhHHHHHHHHHHhhCCCeeecCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE--MGIDEEFRIVEELLNKIPTSFNPHQ 150 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (221)
|+..+++..+..++..+- +.-.-.|+++.-.-..-...++..|++++.++-+ .++....+...+........++++.
T Consensus 95 I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~ 173 (388)
T PRK07366 95 VLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSY 173 (388)
T ss_pred EEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeC
Confidence 666666666655554432 2211234444433334456667899999987643 1222112222222222346778776
Q ss_pred CCCCcc
Q 043209 151 FKNPAN 156 (221)
Q Consensus 151 ~~n~~~ 156 (221)
..||-.
T Consensus 174 p~NPTG 179 (388)
T PRK07366 174 PHNPTT 179 (388)
T ss_pred CCCCCC
Confidence 566654
No 378
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=55.29 E-value=76 Score=23.38 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=34.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 123 (221)
|...+.|+.|.-+|+.-++.|.+++++... . +.+.++..|-.+....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~---~-~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS---P-RLEAIKEQGLTITGPD 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH---H-HHHHHHHHCEEEEETT
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc---c-cHHhhhheeEEEEecc
Confidence 456688999999999988899998888744 2 5555777776665544
No 379
>PRK06482 short chain dehydrogenase; Provisional
Probab=55.24 E-value=93 Score=25.40 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=27.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++.+|+.++|.-|.+++......|.+++++...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888889999999999988889987776643
No 380
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.17 E-value=61 Score=25.72 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=49.8
Q ss_pred CCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCCHH----HHHHHHHcC
Q 043209 43 EPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSG--NTGIGMACFAAAKGYKLILVMPAFMSLE----KRIILQAYG 116 (221)
Q Consensus 43 ~ptGs~K~R~a~~~~~~a~~~g~~~~g~~~vv~assG--N~~~alA~~a~~~g~~~~ivvp~~~~~~----~~~~l~~~G 116 (221)
-|+|+=|-..+.-+..+...++. +..+++.-+- -.--.|..+|+.+|+++...-....+.. -++.++.-+
T Consensus 8 GptGvGKTTt~aKLAa~~~~~~~----~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (196)
T PF00448_consen 8 GPTGVGKTTTIAKLAARLKLKGK----KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKG 83 (196)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTT------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCchHhHHHHHHHHHhhccc----cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcC
Confidence 37888888877777777666554 5556666552 2335678889999998776443322222 234455667
Q ss_pred CEEEEeCCC
Q 043209 117 AQLILTNAE 125 (221)
Q Consensus 117 a~V~~v~~~ 125 (221)
.+++++|..
T Consensus 84 ~D~vlIDT~ 92 (196)
T PF00448_consen 84 YDLVLIDTA 92 (196)
T ss_dssp SSEEEEEE-
T ss_pred CCEEEEecC
Confidence 889988754
No 381
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=55.16 E-value=88 Score=26.74 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=37.9
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHH----HHHcCCEEEEeC
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRII----LQAYGAQLILTN 123 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~----l~~~Ga~V~~v~ 123 (221)
.|.+ .|.+..+..-.+|..+|++.+++++|++++++.|+.. +....+. .+..|+++...+
T Consensus 143 ~g~l-~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 143 FGKL-KGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred hCCC-CCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4543 3334333334478999999999999999999988853 2333333 245677776553
No 382
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=55.13 E-value=1.1e+02 Score=28.17 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 48 VKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 48 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
+++..+...+..|.+.+. +..|+...+|.+++.++.+ +-..+.+++.|.
T Consensus 359 ~~~aia~sAv~~A~~l~a----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~ 407 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRN 407 (480)
T ss_pred hHHHHHHHHHHHHHhcCC----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCC
Confidence 445555555555555442 3323333446666554443 224555555554
No 383
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=55.13 E-value=79 Score=24.45 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC--CCHHH--HHHHHHcC---CEEEEeCC
Q 043209 52 IAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAF--MSLEK--RIILQAYG---AQLILTNA 124 (221)
Q Consensus 52 ~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~--~~~~~--~~~l~~~G---a~V~~v~~ 124 (221)
.+...+..+.+.|. + +...|+.|. ......++.+|+.-.++.... .|..+ .+.++.++ .+|..+++
T Consensus 131 ~~~~~l~~L~~~Gi-----~-~~i~TGD~~-~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI-----K-VAILTGDNE-STASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE-----E-EEEEESSEH-HHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc-----c-eeeeecccc-ccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 46777777777773 2 555554444 566777889999665555555 67777 77777766 36888877
Q ss_pred CCChhHHH
Q 043209 125 EMGIDEEF 132 (221)
Q Consensus 125 ~~~~~~~~ 132 (221)
. .+|..
T Consensus 204 g--~nD~~ 209 (215)
T PF00702_consen 204 G--VNDAP 209 (215)
T ss_dssp S--GGHHH
T ss_pred C--HHHHH
Confidence 5 45543
No 384
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=54.83 E-value=1.1e+02 Score=24.51 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=33.5
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC----CCcEEEEEeCCC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKN----PEIKVYGVEPAE 212 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~----~~~kvigVe~~~ 212 (221)
...+++++.++.+|+|+|. +..++.|+..++++.+ .++.|+|++...
T Consensus 167 ~~~~~l~~~~~~~~ai~~~--~d~~A~g~~~al~~~g~~ip~dv~v~g~d~~~ 217 (264)
T cd06274 167 LMAELLARLGRLPRALFTT--SYTLLEGVLRFLRERPGLAPSDLRIATFDDHP 217 (264)
T ss_pred HHHHHHccCCCCCcEEEEc--ChHHHHHHHHHHHHcCCCCCcceEEEEeCCHH
Confidence 4455555432458999866 5677889999999876 358899888643
No 385
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=54.79 E-value=1.5e+02 Score=26.67 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=36.3
Q ss_pred EEeeCCChHHHHHHHHHHH------cCC--eEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 73 LIECTSGNTGIGMACFAAA------KGY--KLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~------~g~--~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
++..++|..+..++..+.. .++ .-.|++|...-......+...|++++.++.+
T Consensus 81 ~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 81 ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 6667777777766665431 132 2457777766677777788899999988753
No 386
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=54.78 E-value=1.3e+02 Score=25.34 Aligned_cols=52 Identities=23% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 65 LITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 65 ~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
.+.++...+|. ++|..|.++...|+.+|+..++++ ..+..+...++.+|+.+
T Consensus 164 ~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 164 QVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred CCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 45566665665 579999999999999998434444 33466777778899864
No 387
>PRK06953 short chain dehydrogenase; Provisional
Probab=54.66 E-value=1e+02 Score=24.18 Aligned_cols=52 Identities=27% Similarity=0.283 Sum_probs=36.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
+.+|+..+|..|.+++......|.+++++... ..+.+.++..+.+.+.++-.
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~ 54 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDVA 54 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecCC
Confidence 45888888999999999887789887766433 33445555567666655543
No 388
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.31 E-value=29 Score=32.96 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=38.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC---------C---------HHHHHHHHHcCCEEEE
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM---------S---------LEKRIILQAYGAQLIL 121 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~---------~---------~~~~~~l~~~Ga~V~~ 121 (221)
..|+.-++|..|.+.|...++.|.+++||=.... + ...++.++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 3599999999999999999999999888853221 1 1235667888988764
No 389
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=54.14 E-value=1.3e+02 Score=25.27 Aligned_cols=55 Identities=27% Similarity=0.459 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
+...+.++...+|. .+|..|.++...|+.+|.+.++.+. .+..+...++.+|++-
T Consensus 155 ~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~~ 209 (341)
T cd08262 155 RRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGADI 209 (341)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCcE
Confidence 44556677775666 5689999999999999987655553 3567777878889853
No 390
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=54.02 E-value=66 Score=28.21 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=34.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
.++..++|..+..++..+-..+=.-.|++|...-......+...|++++.++.+
T Consensus 48 ~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 48 KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 366667776665554443222223456777766666677778889999998754
No 391
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=53.99 E-value=1.2e+02 Score=28.33 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
+.+|....+.+.-.-+-..++.+|-..|....-+=|.....+...+++...+++++++..
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~ 128 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDED 128 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCc
Confidence 444544444444466777888888888988887778877888889999999999999885
No 392
>CHL00194 ycf39 Ycf39; Provisional
Probab=53.94 E-value=67 Score=27.15 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=25.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
.+|+.++|..|..++......|.+++++...
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4788888999999998888889988888743
No 393
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.92 E-value=1.4e+02 Score=30.05 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=28.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
.|+.-++|..|.+.|...++.|++++||=..
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 4999999999999999999999999998644
No 394
>PRK07576 short chain dehydrogenase; Provisional
Probab=53.85 E-value=1.2e+02 Score=24.67 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=35.4
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS-LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~-~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|.-|.+++......|.+++++...... ....+.+...+.+++.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 64 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVS 64 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEE
Confidence 566888888999999999888889986666533211 112234555566665443
No 395
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=53.84 E-value=1.2e+02 Score=24.86 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=37.6
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
...+.++...+|. ++|..|.+++..|+.+|.+.++++.. ...+...++.+|++-+
T Consensus 124 ~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~~~ 178 (312)
T cd08269 124 RGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDR--RPARLALARELGATEV 178 (312)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCceE
Confidence 4556677776666 56889999999999999983333322 3456666777887433
No 396
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=53.75 E-value=72 Score=27.32 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=37.0
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC-C-HHHHH----HHHHcCCEEEEeC
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM-S-LEKRI----ILQAYGAQLILTN 123 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~-~-~~~~~----~l~~~Ga~V~~v~ 123 (221)
.|.+ .|.+..+..-..|.++|++.++.++|++++++.|... + ...++ ..+..|+++..++
T Consensus 142 ~g~l-~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 142 FGDV-SKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred hCCc-CCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 4543 2344333333467789999999999999999998852 2 22222 2355677776554
No 397
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=53.70 E-value=1e+02 Score=26.05 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=32.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
+.+.+|...+|..|.+++..|+.+|.+.++.... .+.+.++.+|++
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~ 208 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGAD 208 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCc
Confidence 6665666667999999999999999986555432 245556667764
No 398
>PRK06202 hypothetical protein; Provisional
Probab=53.65 E-value=21 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.404 Sum_probs=29.1
Q ss_pred CCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 176 VDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 176 ~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
...+=+++|+|....-++..+++.+++.+|+||++..
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~ 98 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP 98 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence 4567788899988777777776667788999999864
No 399
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=53.36 E-value=1.1e+02 Score=25.68 Aligned_cols=52 Identities=25% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 65 LITPGKTVLIECTSGNTGIGMACFAAAKG-YKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 65 ~~~~g~~~vv~assGN~~~alA~~a~~~g-~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
.+.++.+.+|.. +|..|.+++..|+.+| .+++++.. +..+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 345566656655 6669999999999998 66655432 3456667788887443
No 400
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.31 E-value=78 Score=26.05 Aligned_cols=49 Identities=29% Similarity=0.305 Sum_probs=36.4
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 68 ~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
++...++...+|..|.+++..|+.+|.+.+...+ +..+.+.++.+|+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 3567677677799999999999999997544432 456777777788753
No 401
>PRK06180 short chain dehydrogenase; Provisional
Probab=53.29 E-value=1.2e+02 Score=24.95 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=26.8
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
+..+|+..+|..|.+++......|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 55688889999999999998888998776654
No 402
>PRK09291 short chain dehydrogenase; Provisional
Probab=53.27 E-value=69 Score=25.70 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=27.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++.+|+.++|..|.+++......|.+++++...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456889999999999999998899988877654
No 403
>PRK12747 short chain dehydrogenase; Provisional
Probab=53.20 E-value=1.1e+02 Score=24.56 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=36.2
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC-C-CHHHHHHHHHcCCEEEEeC
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAF-M-SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~-~-~~~~~~~l~~~Ga~V~~v~ 123 (221)
+++.+|+.++|.-|.+++......|.++++..... . .......++..|.++..+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 35678999999999999999988998877653221 1 1222344555566655443
No 404
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=53.16 E-value=1.3e+02 Score=24.72 Aligned_cols=56 Identities=29% Similarity=0.336 Sum_probs=39.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+...+.++...+|...+|..|.++...++.+|.+.+++.. +..+.+.++.+|++.+
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAG---SDEKCAACEALGADIA 188 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 4456777777677777799999999999999998655543 2344445566776443
No 405
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.02 E-value=1.1e+02 Score=24.10 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=35.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 124 (221)
++.+|+.++|..|.+++......|.+++++...+.. ....+.++..+.++..+..
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKA 62 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 466888888999999999888889987766333211 1223334445666655543
No 406
>PRK06500 short chain dehydrogenase; Provisional
Probab=52.77 E-value=1.2e+02 Score=24.16 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=41.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHH-HHHHcCCEEEEeCCC-CChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRI-ILQAYGAQLILTNAE-MGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~-~l~~~Ga~V~~v~~~-~~~~~~~~~a~~~~~~ 141 (221)
++.+|+..+|..|.+++......|.+++++... ..++. ..+.+|.++..+..+ .+.++..+....+.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 567888889999999999998899886655432 22322 234457766544322 1233444444444333
No 407
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=52.68 E-value=68 Score=28.74 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=34.0
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
...|++ |+..+.|+-|+.+|..++.+|.+++++-.+ +.+.......|.++
T Consensus 192 ~l~Gk~-VvViG~G~IG~~vA~~ak~~Ga~ViV~d~d---p~r~~~A~~~G~~v 241 (406)
T TIGR00936 192 LIAGKT-VVVAGYGWCGKGIAMRARGMGARVIVTEVD---PIRALEAAMDGFRV 241 (406)
T ss_pred CCCcCE-EEEECCCHHHHHHHHHHhhCcCEEEEEeCC---hhhHHHHHhcCCEe
Confidence 345554 999999999999999999999985554222 22333444456544
No 408
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=52.59 E-value=24 Score=29.60 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=26.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
.|+..++|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4889999999999999999999999988643
No 409
>PRK14031 glutamate dehydrogenase; Provisional
Probab=52.56 E-value=80 Score=28.69 Aligned_cols=52 Identities=13% Similarity=-0.024 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 50 DRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
-|+..+.+..+.+.........+|+.-+.||-|..+|.....+|.+++++.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 3577777777654432333234589999999999999999999999998876
No 410
>PRK05957 aspartate aminotransferase; Provisional
Probab=52.55 E-value=98 Score=27.02 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=39.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
.|+..++++.+..++..+- +.-.-.|+++.-.-......++..|++++.++.+.++.-..+..++..++....+++...
T Consensus 91 ~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p 169 (389)
T PRK05957 91 AIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISP 169 (389)
T ss_pred eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCC
Confidence 3676777766665444332 222223444332112223345779999998865432221122222222333355555444
Q ss_pred CCCc
Q 043209 152 KNPA 155 (221)
Q Consensus 152 ~n~~ 155 (221)
.||-
T Consensus 170 ~NPt 173 (389)
T PRK05957 170 NNPT 173 (389)
T ss_pred CCCC
Confidence 4443
No 411
>PLN02253 xanthoxin dehydrogenase
Probab=52.37 E-value=1.1e+02 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.7
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+.++|.-|.+++......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 56789999999999999998889988766643
No 412
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=52.13 E-value=1.5e+02 Score=26.84 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=45.4
Q ss_pred EEeeCCChHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeec-CC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYK-LILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNP-HQ 150 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~-~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 150 (221)
|+..++... |+-..++.+--+ -+|++..-.-..-+..++.+|++++.|+.+.+=-+-....+.+.+..+..+|+ +.
T Consensus 158 IiiT~G~q~--al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 158 IVITSGAQQ--ALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred EEEeCCHHH--HHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCC
Confidence 555555444 455666555323 45666554567778889999999998875421111222222222223455554 55
Q ss_pred CCCCccH
Q 043209 151 FKNPANP 157 (221)
Q Consensus 151 ~~n~~~~ 157 (221)
+.||...
T Consensus 236 ~qNPtG~ 242 (459)
T COG1167 236 FQNPTGV 242 (459)
T ss_pred CCCCCCC
Confidence 5677643
No 413
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=52.07 E-value=1.4e+02 Score=24.88 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=36.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCCEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQA-YGAQL 119 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga~V 119 (221)
+.+.++...+|...+|..|.+++..|+.+|.+.+++.+ +..+...++. +|++-
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~ 194 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDA 194 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCce
Confidence 44566666566666799999999999999997555532 3455666655 77643
No 414
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=51.91 E-value=1e+02 Score=26.87 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=35.6
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCC--CCHHHHHHHH----HcCCEEEEe
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAF--MSLEKRIILQ----AYGAQLILT 122 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~--~~~~~~~~l~----~~Ga~V~~v 122 (221)
|.+..+..-..|.+.|+..+++++|++++++.|+. .+...+..++ ..|.++...
T Consensus 154 glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (338)
T PRK02255 154 DCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVT 213 (338)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEE
Confidence 34433333447999999999999999999999985 3333333332 356666544
No 415
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=51.85 E-value=1.5e+02 Score=27.57 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=39.6
Q ss_pred CCeEEEeeCC---ChHHHHHHHHHHHcC-CeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 043209 69 GKTVLIECTS---GNTGIGMACFAAAKG-YKLILVMPAFM--SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 69 g~~~vv~ass---GN~~~alA~~a~~~g-~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 123 (221)
|.+ |+..+- +|.++|+...+..+| ++++++.|+.. +...++.++..|+.+..++
T Consensus 174 glk-Va~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 174 FIH-IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CCE-EEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 444 444444 799999999999998 99999999863 4455566777788776543
No 416
>PRK08339 short chain dehydrogenase; Provisional
Probab=51.84 E-value=1.2e+02 Score=24.69 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=27.0
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++..+|+.+++.-|.++|......|.+++++..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 356788888899999999999999998766543
No 417
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=51.77 E-value=16 Score=33.31 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCEEEEccCchhHHHHHHHHHHhc----------------CC------CcEEEEEeCCCCccCC
Q 043209 176 VDIFVSGIGTGGTVSGVGNFLKKK----------------NP------EIKVYGVEPAESAILN 217 (221)
Q Consensus 176 ~d~vv~p~G~Gg~~~Gi~~~~~~~----------------~~------~~kvigVe~~~s~~~~ 217 (221)
-+.||+.+|+|++.----.++.+. +| +.||+|+++.|+|+|+
T Consensus 233 a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmS 296 (488)
T PF06039_consen 233 AKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMS 296 (488)
T ss_pred CCEEEECCchHhHHHHHHcCChhhcccCCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCcc
Confidence 578999999988754322222111 12 6799999999999986
No 418
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=51.59 E-value=1.6e+02 Score=25.36 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEee-CCChHHHHHHHH--HHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 49 KDRIAFSMIKDAEEKGLITPGKTVLIEC-TSGNTGIGMACF--AAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 49 K~R~a~~~~~~a~~~g~~~~g~~~vv~a-ssGN~~~alA~~--a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
=.+....+-..+.+.|. ..++.. +..+........ ....++..+++.|.+.. ...++.++..|-.|+.++
T Consensus 38 ~~~~~~Gi~~aa~~~G~-----~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 38 FTSGGNGAKEAGKELGV-----DVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHHHHHHhCC-----EEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 33444455555566663 323322 223333333332 33457788888776543 456677777788888776
Q ss_pred CC
Q 043209 124 AE 125 (221)
Q Consensus 124 ~~ 125 (221)
..
T Consensus 113 ~~ 114 (336)
T PRK15408 113 SD 114 (336)
T ss_pred CC
Confidence 53
No 419
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=51.57 E-value=1.3e+02 Score=25.84 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=34.8
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+...+|.+.+|. .+|..|.+++..|+.+|.+.+++... +..+...++.+|++.+
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 444566664554 67999999999999999875554432 2223344456888643
No 420
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=51.41 E-value=1.1e+02 Score=26.97 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=41.9
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--ChhHHHHHHHHHHhhCCCeeecCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM--GIDEEFRIVEELLNKIPTSFNPHQ 150 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~--~~~~~~~~a~~~~~~~~~~~~~~~ 150 (221)
|+..+++..+..++..+- .+-.-.|+++.-.-..-...++.+|++++.++... ++.-..+..++..++....+++..
T Consensus 107 i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 185 (412)
T PTZ00433 107 VVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTN 185 (412)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeC
Confidence 666666666665555443 22222455544333444566788999998876421 121112222333333345666654
Q ss_pred CCCCcc
Q 043209 151 FKNPAN 156 (221)
Q Consensus 151 ~~n~~~ 156 (221)
.+||..
T Consensus 186 p~NPtG 191 (412)
T PTZ00433 186 PSNPCG 191 (412)
T ss_pred CCCCCC
Confidence 456543
No 421
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=51.39 E-value=91 Score=28.03 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCC-eEEEEecCC-----CCHHHHHHHHHcCCEEEE
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGY-KLILVMPAF-----MSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~-~~~ivvp~~-----~~~~~~~~l~~~Ga~V~~ 121 (221)
+++ |+..++|+.|.-+|..+..+|. +++++.... ......+.++..|.+++.
T Consensus 273 g~~-VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 273 GKR-VVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 344 8888899999999999999998 777776532 134456677888888774
No 422
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=51.19 E-value=1.8e+02 Score=25.92 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=62.9
Q ss_pred eEEEeeCCChHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeec
Q 043209 71 TVLIECTSGNTGIGMACFAAAK--GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNP 148 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~--g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (221)
+..|..|+|+-|.+..-+.+.+ .++++.+.-......-.++.+.++.+.+.+..+ ......++..... +
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~~~~~l~~~l~~~-~---- 73 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE----EAAKELKEALAAA-G---- 73 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHhhccC-C----
Confidence 3466777899999877777665 566666664443444567788999999888653 1111111111110 0
Q ss_pred CCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHh
Q 043209 149 HQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKK 198 (221)
Q Consensus 149 ~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~ 198 (221)
.... .|. .-..|+.+. +++|.|+.++++...+.-+..+++.
T Consensus 74 -----~~v~-~G~-~~~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~a 114 (385)
T PRK05447 74 -----IEVL-AGE-EGLCELAAL--PEADVVVAAIVGAAGLLPTLAAIRA 114 (385)
T ss_pred -----ceEE-ECh-hHHHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHC
Confidence 0011 121 122344443 4689999999886555556666644
No 423
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=51.08 E-value=1.7e+02 Score=25.50 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=31.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
|..-+.||.|.++|...+..|++++++.+..... ....+..|..
T Consensus 20 IgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s--~~~A~~~G~~ 63 (330)
T PRK05479 20 VAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKS--WKKAEADGFE 63 (330)
T ss_pred EEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhh--HHHHHHCCCe
Confidence 7777899999999999999999888776553222 2223456654
No 424
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=51.04 E-value=1.4e+02 Score=24.75 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=36.0
Q ss_pred CCCCC-eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 66 ITPGK-TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 66 ~~~g~-~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
+.++. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~ 193 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASE 193 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcE
Confidence 55666 65666666999999999999999986555432 34456667788743
No 425
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=50.92 E-value=82 Score=26.66 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=35.7
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.++.+.+|. ..|..|.+++..|+.+|.+.+++.+. ..+.+.++.+|++-+.
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 5666665664 57999999999999999975554332 3455556667765443
No 426
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=50.89 E-value=96 Score=22.69 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCCEEEEccCchhHHHHHHHHHHhcC----CCcEEEEEeC
Q 043209 175 QVDIFVSGIGTGGTVSGVGNFLKKKN----PEIKVYGVEP 210 (221)
Q Consensus 175 ~~d~vv~p~G~Gg~~~Gi~~~~~~~~----~~~kvigVe~ 210 (221)
.||+||| .+...+.|+..++.+.+ .++.|++++-
T Consensus 68 ~pdaii~--~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 68 RPDAIIC--SNDRLALGVLRALRELGIRVPQDISVVSFDD 105 (160)
T ss_dssp SSSEEEE--SSHHHHHHHHHHHHHTTSCTTTTSEEEEESS
T ss_pred CCcEEEE--cCHHHHHHHHHHHHHcCCcccccccEEEecC
Confidence 6899998 78889999999999986 3789999884
No 427
>PRK06924 short chain dehydrogenase; Provisional
Probab=50.73 E-value=1.2e+02 Score=24.19 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=25.5
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
..+|+.++|..|.+++......|.+++++..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 4588888899999999998888998766654
No 428
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.61 E-value=1.9e+02 Score=26.07 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=46.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHH----HHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeec
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRI----ILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNP 148 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~----~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (221)
.+..+||-.+..++..+- ++=--.|++|...-..... .++.+|+++.+++...+.+ + .++..+++...+|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~---~-l~~~I~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD---E-IVALANDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH---H-HHHhCCcCCeEEEE
Confidence 566788888777777654 3322356666654332222 3688999999997632222 2 22222333467787
Q ss_pred CCCCCCc
Q 043209 149 HQFKNPA 155 (221)
Q Consensus 149 ~~~~n~~ 155 (221)
....||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 7777777
No 429
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=50.58 E-value=1.2e+02 Score=26.44 Aligned_cols=82 Identities=10% Similarity=-0.038 Sum_probs=40.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHH-hhCCCeeecCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELL-NKIPTSFNPHQF 151 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~ 151 (221)
|+..+++..+..++..+- ..-.-.|++|.-.-..-....+.+|++++.++.+.++.-..+...+.. .+....+++..-
T Consensus 106 I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P 184 (380)
T PLN03026 106 ILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSP 184 (380)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCC
Confidence 666555565555444332 221124555443333444556789999998865322322222222222 334467777544
Q ss_pred CCCc
Q 043209 152 KNPA 155 (221)
Q Consensus 152 ~n~~ 155 (221)
+||-
T Consensus 185 ~NPT 188 (380)
T PLN03026 185 NNPD 188 (380)
T ss_pred CCCC
Confidence 4443
No 430
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.50 E-value=1.4e+02 Score=24.39 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC---C-CcEEEE-EeCC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKN---P-EIKVYG-VEPA 211 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~---~-~~kvig-Ve~~ 211 (221)
...+++++. ++||+|||. +...+.|+..++++.+ | ++.|+| .+..
T Consensus 168 ~~~~~l~~~-~~~~ai~~~--~d~~A~gvl~al~~~gl~vP~dvsvig~~d~~ 217 (269)
T cd06287 168 ACAQLLAQH-PDLDALCVP--VDAFAVGAVRAATELGRAVPDQLRVVTRYDGL 217 (269)
T ss_pred HHHHHHhCC-CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEeccCch
Confidence 334555543 468999976 6678889999999877 3 688888 5543
No 431
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=50.50 E-value=1.3e+02 Score=24.02 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
+++.+|+.++|..|.+++......|.+++++..
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r 44 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGR 44 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeC
Confidence 467788999999999999988888987766553
No 432
>PRK07074 short chain dehydrogenase; Provisional
Probab=50.32 E-value=1.3e+02 Score=24.09 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
++.+|+..+|..|.+++......|.+++++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 45688888899999999998888988766653
No 433
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=50.27 E-value=1.5e+02 Score=24.86 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=37.6
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
+...+.++...+|. .+|..|.+++..|+.+|++++++.. +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 34456677775665 5688899999999999998665532 36666666777764
No 434
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=50.27 E-value=93 Score=28.12 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=63.1
Q ss_pred HHcCCCCCCCeEEEeeCC---ChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHH
Q 043209 61 EEKGLITPGKTVLIECTS---GNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEE 137 (221)
Q Consensus 61 ~~~g~~~~g~~~vv~ass---GN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~ 137 (221)
...|..++.-..|-.+++ |++++=+...-...|+++-.|.....-..+ +.++..| ..++.. .+.+...+.+.
T Consensus 35 ~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~-ERI~ing---~~Isd~-~~~~~~~~ve~ 109 (427)
T COG0285 35 ERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFN-ERIRING---EPISDE-ELAAAFERVEE 109 (427)
T ss_pred HHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccc-eEEEECC---EECCHH-HHHHHHHHHHH
Confidence 344543333334555544 899999998889999998888766533333 2222222 123322 23344554444
Q ss_pred HHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhH
Q 043209 138 LLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGT 188 (221)
Q Consensus 138 ~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~ 188 (221)
...... +..+-..+ -.--++.-.+.|. ++|++|+=||=||-
T Consensus 110 ~~~~~~-------~~~~T~FE-~~Ta~Af~~F~~~--~vD~aIlEVGLGGR 150 (427)
T COG0285 110 AAGSLD-------LISLTYFE-VLTAMAFLYFAEA--KVDVAILEVGLGGR 150 (427)
T ss_pred Hhcccc-------cCCCcHHH-HHHHHHHHHHHhC--CCCEEEEecccccc
Confidence 443321 12233345 2334666777775 48999988888775
No 435
>PRK09242 tropinone reductase; Provisional
Probab=50.25 E-value=1.3e+02 Score=24.11 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=42.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHc--CCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSL-EKRIILQAY--GAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~-~~~~~l~~~--Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
++.+|+..+|..|.+++......|.+++++....... .....++.. +.++..+..+- +.++..+...+..++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5668888889999999999988999876665432111 112233333 56776554331 233334444444443
No 436
>PLN02583 cinnamoyl-CoA reductase
Probab=50.20 E-value=1e+02 Score=25.81 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=28.3
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++.+|+..+|..|.+++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 567888889999999999998899998887754
No 437
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=50.18 E-value=1.7e+02 Score=25.47 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=42.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 44 PCSSVKDRIAFSMIKDAEEKGL--ITPGKTVLIECTSGNTGIGMACFAAA-KGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 44 ptGs~K~R~a~~~~~~a~~~g~--~~~g~~~vv~assGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+.|....|-+..-. ..+.+. +.+....|+..+++..+..++..+-. ++---.|++|.-.-..-...++.+|++++
T Consensus 68 ~~G~~~lR~aia~~--~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v 145 (396)
T PRK09257 68 IEGLAAYRQAVQEL--LFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVK 145 (396)
T ss_pred CCCCHHHHHHHHHH--hcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEE
Confidence 46776777543322 122221 13322113666667777766653322 12223566666444555777788999999
Q ss_pred EeCC
Q 043209 121 LTNA 124 (221)
Q Consensus 121 ~v~~ 124 (221)
.++-
T Consensus 146 ~v~~ 149 (396)
T PRK09257 146 TYPY 149 (396)
T ss_pred EEec
Confidence 8863
No 438
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=49.97 E-value=1.3e+02 Score=23.83 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=36.1
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCC
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTNA 124 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~ 124 (221)
+.+|+..+|..|.+++......|.+++++...+.. ......++..|.++..+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA 58 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEc
Confidence 45888888999999999988899987765533221 1223445566766655443
No 439
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=49.93 E-value=1.2e+02 Score=27.47 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=37.5
Q ss_pred EEeeCCChHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC
Q 043209 73 LIECTSGNTGIGMACFAA-AKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125 (221)
Q Consensus 73 vv~assGN~~~alA~~a~-~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~ 125 (221)
=+..|+||+- ++=..-+ ..+..-+|++.+.+-..-++.++.+|+.++.|+-+
T Consensus 126 diiit~G~t~-~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md 178 (472)
T KOG0634|consen 126 DIIITNGNTD-GLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMD 178 (472)
T ss_pred eEEEecCCch-HHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEecccc
Confidence 4556677763 3333333 34777788888888888999999999999998754
No 440
>PRK06436 glycerate dehydrogenase; Provisional
Probab=49.85 E-value=1.1e+02 Score=26.16 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=60.5
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
+|..-+.|+-|+++|..++.+|++++++-+.... .|.... +. ...++.++. +...+.--
T Consensus 124 tvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~-------~~----~l~ell~~a-Div~~~lp 182 (303)
T PRK06436 124 SLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSI-------YM----EPEDIMKKS-DFVLISLP 182 (303)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCcccc-------cC----CHHHHHhhC-CEEEECCC
Confidence 4777888999999999999999988877654211 122110 00 112334443 44444322
Q ss_pred CCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHh
Q 043209 152 KNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTV--SGVGNFLKK 198 (221)
Q Consensus 152 ~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~--~Gi~~~~~~ 198 (221)
.++. -...+..+.++++ ++..+++-+|.|+.. ..+..+++.
T Consensus 183 ~t~~----T~~li~~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 183 LTDE----TRGMINSKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCch----hhcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 2322 2345567888887 468899999988875 344555554
No 441
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=49.82 E-value=1.4e+02 Score=24.35 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=38.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
+.+.+++..+|...+|..|.+++..++.+|.+.++..+. ..+.+.++.+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 455666776777767999999999999999886555432 455555666777544
No 442
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.73 E-value=1.4e+02 Score=24.26 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=38.5
Q ss_pred CeEEEeeCCC--hHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEE-EEeCCCCChhHHHHHHHHHHhhC
Q 043209 70 KTVLIECTSG--NTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQ-AYGAQL-ILTNAEMGIDEEFRIVEELLNKI 142 (221)
Q Consensus 70 ~~~vv~assG--N~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~-~~Ga~V-~~v~~~~~~~~~~~~a~~~~~~~ 142 (221)
+..+|+..++ --|.++|......|.++++..........++.+. ..|... +.+|-. +.++..+..++..++.
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVT-NPKSISNLFDDIKEKW 84 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCC-CHHHHHHHHHHHHHHc
Confidence 5557777765 3677888777778988665532211122344443 335443 334433 3445555555555543
No 443
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=49.71 E-value=73 Score=25.69 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=39.4
Q ss_pred eEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHH
Q 043209 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEE 137 (221)
Q Consensus 71 ~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~ 137 (221)
..||.+.+||. +|+..+-.+.|.+..|.- + +.. ...|+-+..++.+.|.++++..++
T Consensus 4 i~IIDyg~GNL-~Sv~~Aler~G~~~~vs~--d--~~~-----i~~AD~liLPGVGaf~~am~~L~~ 60 (204)
T COG0118 4 VAIIDYGSGNL-RSVKKALERLGAEVVVSR--D--PEE-----ILKADKLILPGVGAFGAAMANLRE 60 (204)
T ss_pred EEEEEcCcchH-HHHHHHHHHcCCeeEEec--C--HHH-----HhhCCEEEecCCCCHHHHHHHHHh
Confidence 35888999999 788888899996554433 1 222 345677778887778887765543
No 444
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=49.65 E-value=94 Score=26.71 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC
Q 043209 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS 105 (221)
Q Consensus 68 ~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~ 105 (221)
.|.+..+..-.+|.+.|+..++..+|+.++++.|+...
T Consensus 152 ~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 152 NQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 34443444445899999999999999999999998743
No 445
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=49.63 E-value=1.4e+02 Score=24.34 Aligned_cols=121 Identities=16% Similarity=0.098 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc---CCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHH
Q 043209 82 GIGMACFAAAKGYKLILVMPAFMSLEKRIILQAY---GAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPK 158 (221)
Q Consensus 82 ~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~---Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~ 158 (221)
|.+.|-..+.+|+++.++-++..+...+..+..+ |..|....... .+....+.+..+.-....+.-|.+-....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~---~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~ 162 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNG---GREVLEEKLEERGAEVREVEVYRTEPPPL 162 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCC---chHHHHHHHHhCCCEEEEEeeeeecCCCc
Confidence 3566778888898777665655666777777766 56776655442 22233334444322344445554322211
Q ss_pred HHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC----CcEEEEEeCC
Q 043209 159 THYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNP----EIKVYGVEPA 211 (221)
Q Consensus 159 ~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~----~~kvigVe~~ 211 (221)
...++ .++++ ...+|+|++..+ .++-.+...+...++ +.+++++-|.
T Consensus 163 -~~~~~-~~~~~--~~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~~ 213 (248)
T COG1587 163 -DEATL-IELLK--LGEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGPR 213 (248)
T ss_pred -cHHHH-HHHHH--hCCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecHH
Confidence 11111 11222 246898887654 556677776666554 3667766553
No 446
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=49.63 E-value=91 Score=26.47 Aligned_cols=72 Identities=19% Similarity=0.119 Sum_probs=43.4
Q ss_pred cCCCC-CeEEEEeCCCCCCCchhhHHHHHHHHHHHHcC--CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 28 VDGCK-ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKG--LITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 28 ~~~~g-~~i~~K~E~~~ptGs~K~R~a~~~~~~a~~~g--~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
++..| ++-.++.++-.-.|-+.|-....... .+.+ ....+++ ++..++|-+++|++++....|.+-+.|+-+
T Consensus 84 A~~iGAVNTl~~~~~g~l~G~NTD~~G~~~~L--~~~~~~~~~~~~~-vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 84 ARLIGAVNTLVREDDGKLRGYNTDGIGFLRAL--KEFGLPVDVTGKR-VLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred HHHhCCceEEEEccCCEEEEEcCCHHHHHHHH--HhcCCCcccCCCE-EEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 33456 45444544455567777764433222 2222 1222344 888888889999999999999865555544
No 447
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=49.57 E-value=1.6e+02 Score=25.32 Aligned_cols=52 Identities=27% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
..+.++...+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 334566665665 67899999999999999884444422 34555566667764
No 448
>PRK06198 short chain dehydrogenase; Provisional
Probab=49.53 E-value=1.4e+02 Score=24.02 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=36.2
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~ 123 (221)
++.+|+..+|..|..++......|.+.++++..+.. ......++..+.++..+.
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 62 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQ 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 566888888999999999998899884444433221 122335566788775543
No 449
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=49.41 E-value=1.3e+02 Score=23.68 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCCCCCeEEEeeCCChHHHH-HHHHHHHcCCeEEEEecCCCC------HHHHHHHHHcCCEEE
Q 043209 55 SMIKDAEEKGLITPGKTVLIECTSGNTGIG-MACFAAAKGYKLILVMPAFMS------LEKRIILQAYGAQLI 120 (221)
Q Consensus 55 ~~~~~a~~~g~~~~g~~~vv~assGN~~~a-lA~~a~~~g~~~~ivvp~~~~------~~~~~~l~~~Ga~V~ 120 (221)
.+...++++|. .+.+|+.-..|.+.. .+.-|..+|++++++.....+ ..-++.|+..|++|+
T Consensus 128 ~L~~~L~~~~i----~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 128 GLAEYLRERGI----DRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred hHHHHHHHCCC----CEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 33444455664 555666666777664 455567789998888765322 123666777788764
No 450
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=49.41 E-value=1.6e+02 Score=24.73 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=38.4
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAA-KGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~-~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+...+.++.+.+|.. +|..|.+++..|+. +|.+.+++. .+..+.+.++.+|++.+.
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v~ 212 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLTI 212 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEEe
Confidence 344567777766665 78899999999997 498755443 244567777778875543
No 451
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.38 E-value=1.4e+02 Score=24.24 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=41.0
Q ss_pred CeEEEeeC--CChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCC-EEEEeCCCCChhHHHHHHHHHHhh
Q 043209 70 KTVLIECT--SGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQA-YGA-QLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~as--sGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~-~Ga-~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
+..+|+.. ++--|.++|......|.++++..........++.+.. .|. ..+.+|-. +.++..+...+..++
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVA-SDDEINQVFADLGKH 81 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCC-CHHHHHHHHHHHHHH
Confidence 55567763 5578899988888889987765332222334444433 343 23344443 455666666665554
No 452
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.38 E-value=1.3e+02 Score=25.05 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=26.5
Q ss_pred EEeeCCChHHHH-----HHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEEEE-eCCC
Q 043209 73 LIECTSGNTGIG-----MACFAAAKGYKLILVMPA--FMSLEKRIILQAYGAQLIL-TNAE 125 (221)
Q Consensus 73 vv~assGN~~~a-----lA~~a~~~g~~~~ivvp~--~~~~~~~~~l~~~Ga~V~~-v~~~ 125 (221)
++..+.-|.-.. +.-.|+..|+.-+++..- .....-...++.+|-+.+. +.++
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 556666654222 344455567766666311 1112234455667766654 5554
No 453
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=49.21 E-value=1.4e+02 Score=24.19 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=49.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHH-------------HHHHHHcCCEEEEeCCCCChhHHHHHHHHH
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEK-------------RIILQAYGAQLILTNAEMGIDEEFRIVEEL 138 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~-------------~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~ 138 (221)
++...++||-|.++|..-...|.+++|--.+...... ......-+++|+++--. |.......+++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP--FEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc--HHHHHhHHHHH
Confidence 3677788999999999999999888777544321111 01123445777776554 66666777777
Q ss_pred HhhCCCeeecCC
Q 043209 139 LNKIPTSFNPHQ 150 (221)
Q Consensus 139 ~~~~~~~~~~~~ 150 (221)
....++...++.
T Consensus 81 ~~~~~~KIvID~ 92 (211)
T COG2085 81 RDALGGKIVIDA 92 (211)
T ss_pred HHHhCCeEEEec
Confidence 665545666654
No 454
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=49.15 E-value=1.4e+02 Score=27.69 Aligned_cols=103 Identities=25% Similarity=0.297 Sum_probs=64.9
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQF 151 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 151 (221)
+|..-+.|+-|.++|..++.+|++++.+-|.. +..+ ...+|.+.. + .+ ++.++. +.+.+.--
T Consensus 142 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~-------ell~~a-DiV~l~lP 203 (526)
T PRK13581 142 TLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LD-------ELLARA-DFITLHTP 203 (526)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HH-------HHHhhC-CEEEEccC
Confidence 47778889999999999999999888776642 2222 234554422 1 22 333433 44444322
Q ss_pred CCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHH--HHHHHHHHh
Q 043209 152 KNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTV--SGVGNFLKK 198 (221)
Q Consensus 152 ~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~--~Gi~~~~~~ 198 (221)
.++. -...+..+.++++ +++.+++-++-|+.. ..+..+++.
T Consensus 204 ~t~~----t~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 204 LTPE----TRGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CChH----hhcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 2222 2234557888888 468999999999875 455566654
No 455
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=49.15 E-value=1.3e+02 Score=25.43 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcCCEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKG-YKLILVMPAFMSLEKRIILQAYGAQL 119 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g-~~~~ivvp~~~~~~~~~~l~~~Ga~V 119 (221)
..+.++.+.+|. ++|..|.+++..|+.+| .++++ + +.+..+...++.+|++-
T Consensus 162 ~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~~ 214 (345)
T cd08286 162 GKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGATH 214 (345)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCCc
Confidence 345666676664 56999999999999999 55433 3 23556677777888743
No 456
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=48.94 E-value=1.2e+02 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=11.5
Q ss_pred HHHHhhCCCCCEEEEccCchhHH
Q 043209 167 EIWEGTRGQVDIFVSGIGTGGTV 189 (221)
Q Consensus 167 Ei~~q~~~~~d~vv~p~G~Gg~~ 189 (221)
+++++. ++|.| +++|+|+.+
T Consensus 77 ~~~~~~--~~D~I-iavGGGS~i 96 (380)
T cd08185 77 ALAREE--GCDFV-VGLGGGSSM 96 (380)
T ss_pred HHHHHc--CCCEE-EEeCCccHH
Confidence 444443 46654 578877654
No 457
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=48.90 E-value=1.2e+02 Score=26.07 Aligned_cols=81 Identities=14% Similarity=0.018 Sum_probs=38.6
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFK 152 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 152 (221)
|+..+++..+..+...+- .+-.-.|+++...-.......+..|++++.++.+. +.-..+..++...+....+++....
T Consensus 87 i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~~~~~~~v~l~~p~ 164 (367)
T PRK02731 87 IILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAKD-YGHDLDAMLAAVTPRTRLVFIANPN 164 (367)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecccC-CCCCHHHHHHHhCCCCcEEEEeCCC
Confidence 555555555444332222 22223455554333334445678999999887532 2111222222223334566665444
Q ss_pred CCc
Q 043209 153 NPA 155 (221)
Q Consensus 153 n~~ 155 (221)
||.
T Consensus 165 npt 167 (367)
T PRK02731 165 NPT 167 (367)
T ss_pred CCC
Confidence 443
No 458
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=48.85 E-value=1.2e+02 Score=23.94 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=42.0
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHcCCEEEEeCCCC-ChhHHHHHHHHHHhh
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMS--LEKRIILQAYGAQLILTNAEM-GIDEEFRIVEELLNK 141 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~--~~~~~~l~~~Ga~V~~v~~~~-~~~~~~~~a~~~~~~ 141 (221)
+|+..+|.-|.++|......|.+++++...... ....+.++..+.++..+..+- +.++..+...+..++
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAE 73 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 688888999999999998899987666533211 223445566677776554331 233333444444333
No 459
>PRK05839 hypothetical protein; Provisional
Probab=48.79 E-value=1.8e+02 Score=25.21 Aligned_cols=78 Identities=10% Similarity=-0.127 Sum_probs=39.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCChHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 44 PCSSVKDRIAFSMIKDAEEKGL-ITPGKTVLIECTSGNTGIGMACFAAAK-GYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 44 ptGs~K~R~a~~~~~~a~~~g~-~~~g~~~vv~assGN~~~alA~~a~~~-g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.|....|-+..-... .+.|. +.+. .|+..+++..+..+...+... +-.-.|++|.-.-..-...++..|++++.
T Consensus 59 ~~G~~~lr~aia~~l~-~~~g~~~~~~--~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~ 135 (374)
T PRK05839 59 SAGEESLREAQRGFFK-RRFKIELKEN--ELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLL 135 (374)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCcc--eEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEE
Confidence 3566677754322111 12231 3332 366666655554443333222 22245566554444455556889999998
Q ss_pred eCC
Q 043209 122 TNA 124 (221)
Q Consensus 122 v~~ 124 (221)
++.
T Consensus 136 v~~ 138 (374)
T PRK05839 136 MPL 138 (374)
T ss_pred eec
Confidence 865
No 460
>PRK06057 short chain dehydrogenase; Provisional
Probab=48.74 E-value=1.4e+02 Score=23.96 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=40.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcCCEEEEeCCCCChhHHHHHHHHHH
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRII-LQAYGAQLILTNAEMGIDEEFRIVEELL 139 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~-l~~~Ga~V~~v~~~~~~~~~~~~a~~~~ 139 (221)
+++.+|+.++|..|.+++......|.+++++... ..+.+. .+..+..++.++-. +.++..+...+..
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~ 74 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDID---PEAGKAAADEVGGLFVPTDVT-DEDAVNALFDTAA 74 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHHcCCcEEEeeCC-CHHHHHHHHHHHH
Confidence 3677888899999999999998889887766432 222222 23345555555544 2333334444443
No 461
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=48.66 E-value=1.6e+02 Score=25.64 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=48.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEe--cCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVM--PAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIP 143 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivv--p~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~ 143 (221)
|++..=|-+--++..-=..++=+-++++ |..+++.--+.++.+|..|.+.++...++.+.+.+..+.++.|
T Consensus 55 Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 55 VLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred eEecCcccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 5532226555566555566677677776 5567788888999999999999887566666666666655543
No 462
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=48.53 E-value=1.6e+02 Score=24.59 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=38.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~ 118 (221)
+...+.++.+.+|. ++|..|.+++..|+.+|++.++++.. +..+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 34456677765555 57889999999999999884444422 45666777778876
No 463
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=48.30 E-value=1.4e+02 Score=28.32 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCCCCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCC---C--CHHHHHHHHHcCCEEEE
Q 043209 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYK-LILVMPAF---M--SLEKRIILQAYGAQLIL 121 (221)
Q Consensus 66 ~~~g~~~vv~assGN~~~alA~~a~~~g~~-~~ivvp~~---~--~~~~~~~l~~~Ga~V~~ 121 (221)
...+++ |+..++||.|.-+|..+.++|.+ ++++.+.. . ....+......|.+++.
T Consensus 320 ~~~gk~-VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 320 LHPGKK-VVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred ccCCCe-EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 334454 88889999999999999999874 77766442 1 23445555567877764
No 464
>PRK07825 short chain dehydrogenase; Provisional
Probab=48.25 E-value=1.5e+02 Score=24.11 Aligned_cols=68 Identities=13% Similarity=-0.016 Sum_probs=41.0
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH-HHHcC-CEEEEeCCCCChhHHHHHHHHHHhh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRII-LQAYG-AQLILTNAEMGIDEEFRIVEELLNK 141 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~-l~~~G-a~V~~v~~~~~~~~~~~~a~~~~~~ 141 (221)
++.+|+..+|..|.+++......|.+++++.. +..+++. .+..+ .+++.+|-. +.++..+...++.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r---~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL---DEALAKETAAELGLVVGGPLDVT-DPASFAAFLDAVEAD 75 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHhccceEEEccCC-CHHHHHHHHHHHHHH
Confidence 56688889999999999988888998666543 2333332 22333 455555543 234444444444444
No 465
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=48.15 E-value=96 Score=27.53 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=13.2
Q ss_pred HHHHHHhhCCCCCEEEEccCchhHH
Q 043209 165 GPEIWEGTRGQVDIFVSGIGTGGTV 189 (221)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~p~G~Gg~~ 189 (221)
+.+++++. ++|. |+++|+|+.+
T Consensus 98 ~~~~~r~~--~~D~-IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCDG-VIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcCE-EEEeCChHHH
Confidence 44555553 4664 4588887754
No 466
>PRK12742 oxidoreductase; Provisional
Probab=48.11 E-value=1.4e+02 Score=23.59 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=35.9
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEEEeCC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIIL-QAYGAQLILTNA 124 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l-~~~Ga~V~~v~~ 124 (221)
++.+|+.++|.-|.+++......|.++++..... ..+.+.+ +..+.+.+.++-
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGS--KDAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHhCCeEEecCC
Confidence 5678888899999999999888899876654322 2333332 445666665554
No 467
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=48.04 E-value=1.7e+02 Score=25.58 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=41.2
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC--CChhHHHHHHHHHHhhCCCeeecCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE--MGIDEEFRIVEELLNKIPTSFNPHQ 150 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (221)
|+..+++..+..++..+-. .-.-.|+++.-.-..-...++.+|++++.++.. .++.-..+..++..++....+++..
T Consensus 98 i~~t~G~~~al~~~~~~l~-~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 176 (401)
T TIGR01264 98 VVLCSGCSHAIEMCIAALA-NAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNN 176 (401)
T ss_pred EEECcChHHHHHHHHHHhC-CCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcC
Confidence 6666666666555544332 212245555433344456678899999887532 1121112222233333335666654
Q ss_pred CCCCc
Q 043209 151 FKNPA 155 (221)
Q Consensus 151 ~~n~~ 155 (221)
.+||.
T Consensus 177 p~NPt 181 (401)
T TIGR01264 177 PSNPC 181 (401)
T ss_pred CCCCC
Confidence 45554
No 468
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=47.99 E-value=86 Score=31.66 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=38.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--------------CH----HHHHHHHHcCCEEEE
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--------------SL----EKRIILQAYGAQLIL 121 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--------------~~----~~~~~l~~~Ga~V~~ 121 (221)
.|+.-++|..|.+.|+..++.|+++++|=+... +. ..++.++.+|.+++.
T Consensus 541 kVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 541 KVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 489999999999999999999999998854321 11 224567788888765
No 469
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=47.94 E-value=1.4e+02 Score=26.09 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=38.1
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAY-GAQLI 120 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~-Ga~V~ 120 (221)
+...+.++.+.+|. .+|-.|.+++..|+..|.+.++.+.. +..+.+.++.+ +++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 34456677665555 67888999999999999864455432 35677777777 55543
No 470
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=47.90 E-value=87 Score=30.29 Aligned_cols=52 Identities=25% Similarity=0.283 Sum_probs=38.9
Q ss_pred CCeEEEeeCCChHHHHHHHHHHHcCCe-EEEEecCC---C--CHHHHHHHHHcCCEEEE
Q 043209 69 GKTVLIECTSGNTGIGMACFAAAKGYK-LILVMPAF---M--SLEKRIILQAYGAQLIL 121 (221)
Q Consensus 69 g~~~vv~assGN~~~alA~~a~~~g~~-~~ivvp~~---~--~~~~~~~l~~~Ga~V~~ 121 (221)
|++ ||..++||.|.-+|..+.++|.+ ++++.... . ....++.++..|.+++.
T Consensus 570 gk~-VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 570 GKK-VAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CCc-EEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 444 88889999999999999999997 88876542 1 22344567778888764
No 471
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=47.84 E-value=2.3e+02 Score=26.27 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=41.7
Q ss_pred EEEeeCCChHHHHHHHHHH----Hc--CCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCC--C-----hhHHHHHHHHH
Q 043209 72 VLIECTSGNTGIGMACFAA----AK--GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM--G-----IDEEFRIVEEL 138 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~----~~--g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~--~-----~~~~~~~a~~~ 138 (221)
.|+...++..+..++..+- .+ |=++.+..|.-..-...-.+..+|++++.++.+. + |.-..+..++.
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~ 236 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKL 236 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHh
Confidence 4888888888777665541 23 3333333344333333333455688888775421 1 22122233333
Q ss_pred HhhCCCeeecCCCCCCc
Q 043209 139 LNKIPTSFNPHQFKNPA 155 (221)
Q Consensus 139 ~~~~~~~~~~~~~~n~~ 155 (221)
.......+++..-+||-
T Consensus 237 ~~~~~kai~l~nP~NPT 253 (521)
T TIGR03801 237 RDPSIKALFVVNPSNPP 253 (521)
T ss_pred cCCCCcEEEEeCCCCCC
Confidence 33333567764334554
No 472
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.75 E-value=1.2e+02 Score=27.44 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=35.8
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEE
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGAQLIL 121 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~ 121 (221)
.++..+.|..|+++|.+.+..|.+++++-..+. .....+.++..|.+++.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 377778899999999999999998777643322 22334567778877653
No 473
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=47.67 E-value=58 Score=28.46 Aligned_cols=54 Identities=28% Similarity=0.361 Sum_probs=40.6
Q ss_pred CCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 65 LITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 65 ~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
.+.+|+..+|...+|--|.+..-.|+..++ +.++. ..+.++++.++.+||+-+.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t--~~s~e~~~l~k~lGAd~vv 207 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVT--ACSKEKLELVKKLGADEVV 207 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEE--EcccchHHHHHHcCCcEee
Confidence 455677878888889999999999999993 33333 2367788888999987665
No 474
>PRK08013 oxidoreductase; Provisional
Probab=47.65 E-value=59 Score=28.55 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=26.7
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
|+..++|-.|.++|+..++.|++++++=.
T Consensus 6 V~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 6 VVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred EEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 89999999999999999999999998863
No 475
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=47.61 E-value=1.6e+02 Score=24.20 Aligned_cols=56 Identities=29% Similarity=0.422 Sum_probs=39.5
Q ss_pred HcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 62 ~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
+.+.+.++...+|...+|..|.+++..++.+|.++++..+ + .+.+.++.+|++-+.
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEE
Confidence 4556677777666666799999999999999998665542 2 555566667775433
No 476
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.59 E-value=1.5e+02 Score=23.80 Aligned_cols=46 Identities=7% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC----CCcEEEEEeCCC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKN----PEIKVYGVEPAE 212 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~----~~~kvigVe~~~ 212 (221)
...+++++- +++|+|||. +..++.|+..++++++ .++.|+|.+...
T Consensus 165 ~~~~~l~~~-~~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~ 214 (265)
T cd06285 165 AAEKLLRSD-SPPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYNDIP 214 (265)
T ss_pred HHHHHHcCC-CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeecCcH
Confidence 344554442 468998876 5567779999999876 367889887653
No 477
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=47.34 E-value=68 Score=28.46 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=39.7
Q ss_pred CCchhhHHHHHHHHH----HHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecC
Q 043209 45 CSSVKDRIAFSMIKD----AEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPA 102 (221)
Q Consensus 45 tGs~K~R~a~~~~~~----a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~ 102 (221)
.|.+..-.|.+.+.. +++.|..-.|+ +|..-+.||.|..+|..++.+|++++++=|.
T Consensus 88 pg~na~aVAE~v~~~lL~l~r~~g~~l~gk-tvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~ 148 (381)
T PRK00257 88 PGCNARGVVDYVLGSLLTLAEREGVDLAER-TYGVVGAGHVGGRLVRVLRGLGWKVLVCDPP 148 (381)
T ss_pred CCcChHHHHHHHHHHHHHHhcccCCCcCcC-EEEEECCCHHHHHHHHHHHHCCCEEEEECCc
Confidence 355566666665543 33444333444 4888899999999999999999999888653
No 478
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=47.18 E-value=28 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEe
Q 043209 160 HYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVE 209 (221)
Q Consensus 160 g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe 209 (221)
+...++.++.++ +-.||.||.=.|=|- ..++|..+|++++++-.
T Consensus 52 av~~a~~~L~~~-Gf~PDvI~~H~GWGe-----~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 52 AVARAARQLRAQ-GFVPDVIIAHPGWGE-----TLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHHc-CCCCCEEEEcCCcch-----hhhHHHhCCCCcEEEEE
Confidence 344555666666 457999998888776 45789999999999864
No 479
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=47.16 E-value=1.8e+02 Score=24.65 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=24.1
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAF 103 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~ 103 (221)
.++.-++|-.++|++++....|++-+.++..+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 36666777789999999999999766666443
No 480
>PRK04148 hypothetical protein; Provisional
Probab=47.01 E-value=1.2e+02 Score=22.69 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=35.0
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeC
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~ 123 (221)
.+++-+.| +|.++|...+..|.+++.+ +.+...++.++..+.+++..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLNAFVDD 66 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCeEEECc
Confidence 47888888 8777887777889876665 344556777788888877755
No 481
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=46.97 E-value=1.1e+02 Score=26.60 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=39.0
Q ss_pred CCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEE
Q 043209 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121 (221)
Q Consensus 64 g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~ 121 (221)
..+.++.+.+|. ..|..|.++...|+.+|...++.+.. +..+.+.++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 456677775666 67999999999999999854444422 34477788889985443
No 482
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=46.84 E-value=1.1e+02 Score=27.02 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=13.1
Q ss_pred HHHHHHhhCCCCCEEEEccCchhHH
Q 043209 165 GPEIWEGTRGQVDIFVSGIGTGGTV 189 (221)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~p~G~Gg~~ 189 (221)
+.+++++. ++| +|+++|+|+.+
T Consensus 79 ~~~~~~~~--~~D-~IIaiGGGS~i 100 (382)
T PRK10624 79 GVEVFKAS--GAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHHHHhc--CCC-EEEEeCChHHH
Confidence 33444443 567 56688887754
No 483
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=46.84 E-value=48 Score=28.25 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=32.8
Q ss_pred HHHHHHHhh-CCCCCEEEEccCchhHHHHHHHHHHhcCC-CcEEEEEeCC
Q 043209 164 TGPEIWEGT-RGQVDIFVSGIGTGGTVSGVGNFLKKKNP-EIKVYGVEPA 211 (221)
Q Consensus 164 ~~~Ei~~q~-~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~-~~kvigVe~~ 211 (221)
...+++++- .+++|+||+. +..++.|+..++++++- .+.|+|++..
T Consensus 213 ~~~~~l~~~~~~~~~ai~~~--~d~~A~gvl~al~~~Gl~~vpVvg~D~~ 260 (330)
T PRK15395 213 KMDAWLSGPNANKIEVVIAN--NDAMAMGAVEALKAHNKSSIPVFGVDAL 260 (330)
T ss_pred HHHHHHhhCcCCCeeEEEEC--CchHHHHHHHHHHhcCCCCCeEEeeCCC
Confidence 345565542 1357888854 56777899999999887 7789998754
No 484
>PRK09414 glutamate dehydrogenase; Provisional
Probab=46.80 E-value=1.1e+02 Score=27.86 Aligned_cols=52 Identities=13% Similarity=-0.037 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 50 DRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 50 ~R~a~~~~~~a~~~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
-|+..+.+..+.+.........+|+.-+.||-|..+|.....+|.+++.+..
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 3577777777655433333234599999999999999999999998887754
No 485
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=46.79 E-value=1.9e+02 Score=24.97 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=40.3
Q ss_pred EEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCC--CChhHHHHHHHHHHhhCCCeeecCC
Q 043209 73 LIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE--MGIDEEFRIVEELLNKIPTSFNPHQ 150 (221)
Q Consensus 73 vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~--~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (221)
|+..+++..+..++..+- ++-.-.|++|.-.-..-....+..|++|+.++.+ .++.-..+..++...+....+|+..
T Consensus 94 vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~ 172 (383)
T TIGR03540 94 VLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINY 172 (383)
T ss_pred EEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeC
Confidence 555556566555544432 2322345555433333444577899999987642 1232111122222223346777763
Q ss_pred CCCCc
Q 043209 151 FKNPA 155 (221)
Q Consensus 151 ~~n~~ 155 (221)
-.||.
T Consensus 173 P~NPt 177 (383)
T TIGR03540 173 PNNPT 177 (383)
T ss_pred CCCCc
Confidence 34553
No 486
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=46.66 E-value=1.3e+02 Score=25.64 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCeEEEEe---cCC-CCHH----HHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCC-eeecCCCCCC
Q 043209 84 GMACFAAAKGYKLILVM---PAF-MSLE----KRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPT-SFNPHQFKNP 154 (221)
Q Consensus 84 alA~~a~~~g~~~~ivv---p~~-~~~~----~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~n~ 154 (221)
++.|.++.+|++.+-++ |+. .+.. .++.++..+..++++++. +. -+.++.++++.+- ...++++...
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~--~~--~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQ--FR--PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCC--CC--hHHHHHHHHhcCCeEEEecccccc
Confidence 88999999999977544 332 2332 356678899999999876 22 2455555665532 2345555433
Q ss_pred ccHH-HHHhhHHHHHHHhh
Q 043209 155 ANPK-THYETTGPEIWEGT 172 (221)
Q Consensus 155 ~~~~-~g~~t~~~Ei~~q~ 172 (221)
.... ..|.....+.++++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 2211 14555555555544
No 487
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=46.48 E-value=1.6e+02 Score=24.00 Aligned_cols=55 Identities=31% Similarity=0.477 Sum_probs=36.8
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEE
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI 120 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~ 120 (221)
...+.++...+|...+|..|.+++..++.+|.+.+++.. +..+.+.++.+|++..
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAAS---SEEKLALARALGADHV 188 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeC---CHHHHHHHHHcCCcee
Confidence 344566666566666699999999999999998544433 2345555566676443
No 488
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=46.47 E-value=2.4e+02 Score=25.96 Aligned_cols=123 Identities=11% Similarity=0.062 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCeEEEE-----------ecCCCCHHHHHHHHHcCCEEEEeCCCC----ChhHHHHHHHHHHhhCCCee-
Q 043209 83 IGMACFAAAKGYKLILV-----------MPAFMSLEKRIILQAYGAQLILTNAEM----GIDEEFRIVEELLNKIPTSF- 146 (221)
Q Consensus 83 ~alA~~a~~~g~~~~iv-----------vp~~~~~~~~~~l~~~Ga~V~~v~~~~----~~~~~~~~a~~~~~~~~~~~- 146 (221)
.-+...|+.+|.++++- .|..+....+...-..|++-+..+.++ ...++.+...+.+++-...+
T Consensus 262 k~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~ 341 (480)
T cd00288 262 KMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALS 341 (480)
T ss_pred HHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 34666788899887763 233333344555556788888776542 22345444444433221111
Q ss_pred ----ecCCCC---CC-ccHHHHHhhHHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 043209 147 ----NPHQFK---NP-ANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAE 212 (221)
Q Consensus 147 ----~~~~~~---n~-~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~~~kvigVe~~~ 212 (221)
|..+.. .. .+.+ .....+.++.+.+ +.++||+++-+|.++--+++ ..|.+.|+++.+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~-aia~sAv~~A~~l--~akaIVv~T~SG~TA~~lS~----~RP~~pIiavT~~~ 408 (480)
T cd00288 342 HRVLFNEMRRLTPRPTSTTE-AVAMSAVRAAFEL--GAKAIVVLTTSGRTARLVSK----YRPNAPIIAVTRNE 408 (480)
T ss_pred hhhhhhhhhcccccCCChHH-HHHHHHHHHHHhc--CCCEEEEECCCcHHHHHHHh----hCCCCCEEEEcCCH
Confidence 111100 01 1122 3444566777776 57899999999999765544 35667888887654
No 489
>PRK06123 short chain dehydrogenase; Provisional
Probab=46.28 E-value=1.4e+02 Score=23.73 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=33.6
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHcCCEEEEeC
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFM--SLEKRIILQAYGAQLILTN 123 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~--~~~~~~~l~~~Ga~V~~v~ 123 (221)
+..+|+.++|..|.+++..-...|...++...... .......++..+.+++.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 58 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVA 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 45688888899999999888778876544432221 1122344556677665544
No 490
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=46.23 E-value=1.7e+02 Score=24.16 Aligned_cols=43 Identities=5% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcC--CCcEEEEEe
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKN--PEIKVYGVE 209 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~--~~~kvigVe 209 (221)
...+++++- +++|+|||+. ...+.|+..++++.+ .++.|+|.+
T Consensus 175 ~~~~~L~~~-~~~~ai~~~~--d~~a~ga~~al~~~g~~~~i~vvg~d 219 (302)
T TIGR02637 175 EAQGLLKSY-PNLKGIIAPT--TVGIKAAAQAVSDAKLIGKVKLTGLG 219 (302)
T ss_pred HHHHHHHhC-CCccEEEeCC--CchHHHHHHHHHhcCCCCCEEEEEcC
Confidence 445555543 5789999864 445567788888765 367888886
No 491
>PRK09526 lacI lac repressor; Reviewed
Probab=46.14 E-value=1.3e+02 Score=25.29 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCCCEEEEccCchhHHHHHHHHHHhcC----CCcEEEEEeCCC
Q 043209 174 GQVDIFVSGIGTGGTVSGVGNFLKKKN----PEIKVYGVEPAE 212 (221)
Q Consensus 174 ~~~d~vv~p~G~Gg~~~Gi~~~~~~~~----~~~kvigVe~~~ 212 (221)
+.||+||+. +...+.|+..++++++ .++.|+|++...
T Consensus 239 ~~~~ai~~~--~d~~A~g~~~al~~~g~~vP~disvig~d~~~ 279 (342)
T PRK09526 239 PVPSAILVA--NDQMALGVLRALHESGLRVPGQISVIGYDDTE 279 (342)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEeeCCCc
Confidence 458998864 5577789999999877 368899997653
No 492
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.11 E-value=1.5e+02 Score=26.69 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=25.8
Q ss_pred CCCeEEEeeCCChHHHHHHHHHHHcCCeEEEE
Q 043209 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILV 99 (221)
Q Consensus 68 ~g~~~vv~assGN~~~alA~~a~~~g~~~~iv 99 (221)
.|++ ++..+.|+-|..+|..++.+|.+++++
T Consensus 211 ~Gk~-VlViG~G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 211 AGKV-VVVAGYGDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred CCCE-EEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4554 888889999999999999999975554
No 493
>PRK06179 short chain dehydrogenase; Provisional
Probab=46.10 E-value=1.5e+02 Score=23.94 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=39.5
Q ss_pred CeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHh
Q 043209 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRIVEELLN 140 (221)
Q Consensus 70 ~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~ 140 (221)
+..+|+.++|..|.+++......|.++++..... .+... ..+.+++.+|-. +.++..+...+..+
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~---~~~~~--~~~~~~~~~D~~-d~~~~~~~~~~~~~ 69 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNP---ARAAP--IPGVELLELDVT-DDASVQAAVDEVIA 69 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh---hhccc--cCCCeeEEeecC-CHHHHHHHHHHHHH
Confidence 4568888889999999999888899877665432 11111 235566666543 23344444444433
No 494
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=46.08 E-value=1.7e+02 Score=24.29 Aligned_cols=56 Identities=32% Similarity=0.442 Sum_probs=38.1
Q ss_pred cCCCCCCCeEEEeeCCChHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEEEe
Q 043209 63 KGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILT 122 (221)
Q Consensus 63 ~g~~~~g~~~vv~assGN~~~alA~~a~~~g~~~~ivvp~~~~~~~~~~l~~~Ga~V~~v 122 (221)
...+.++.+.++. ++|..|.+++..|+.+|.+++++. .+..+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~---~s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVD---IKEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhCCCEEEc
Confidence 3446666665664 568889999999999998844443 2456666677788754443
No 495
>PRK09275 aspartate aminotransferase; Provisional
Probab=46.04 E-value=2.5e+02 Score=26.11 Aligned_cols=113 Identities=14% Similarity=0.017 Sum_probs=52.8
Q ss_pred CCCchhhHHHHHHHHHHHHcC-CCCC-CCeEEEeeCCChHHHHHHHHH----HHcCCeEEEEecCCCCHHHHHHHH--Hc
Q 043209 44 PCSSVKDRIAFSMIKDAEEKG-LITP-GKTVLIECTSGNTGIGMACFA----AAKGYKLILVMPAFMSLEKRIILQ--AY 115 (221)
Q Consensus 44 ptGs~K~R~a~~~~~~a~~~g-~~~~-g~~~vv~assGN~~~alA~~a----~~~g~~~~ivvp~~~~~~~~~~l~--~~ 115 (221)
|.|.-..|-+...-....+.+ ...+ +...|+...++..+..++..+ ..++=--.|++|.-.-..-....+ ..
T Consensus 133 ~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~ 212 (527)
T PRK09275 133 PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRY 212 (527)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 567767775543311112211 1112 222477777777777766654 123322344444433333333333 44
Q ss_pred CCEEEEeCC--CCChhHHHHHHHHHHhhCCCeeecCCCCCCcc
Q 043209 116 GAQLILTNA--EMGIDEEFRIVEELLNKIPTSFNPHQFKNPAN 156 (221)
Q Consensus 116 Ga~V~~v~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~ 156 (221)
|.+++.++. +.+|.-..+..+++.......++++.-+||-.
T Consensus 213 ~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG 255 (527)
T PRK09275 213 DLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPS 255 (527)
T ss_pred CeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcC
Confidence 667776642 22233223333344333446677654455543
No 496
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=45.93 E-value=1.5e+02 Score=26.86 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=24.4
Q ss_pred EEEeeCCChHHHHHHHHHHHcCCeEEEEec
Q 043209 72 VLIECTSGNTGIGMACFAAAKGYKLILVMP 101 (221)
Q Consensus 72 ~vv~assGN~~~alA~~a~~~g~~~~ivvp 101 (221)
+|..+..|-.+.-+..+|+.+|++++++.+
T Consensus 4 kvLi~~~geia~~ii~a~~~~Gi~~v~v~~ 33 (472)
T PRK07178 4 KILIANRGEIAVRIVRACAEMGIRSVAIYS 33 (472)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 377888888888888889989988877653
No 497
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.86 E-value=50 Score=27.23 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCCCEEEEccCchhHHHHHHHHHHhcCC-CcEEEEEeC
Q 043209 164 TGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNP-EIKVYGVEP 210 (221)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~p~G~Gg~~~Gi~~~~~~~~~-~~kvigVe~ 210 (221)
...+++++- +++|+||++ +...+.|+..++++++- ++.|+|...
T Consensus 176 ~~~~~l~~~-~~~~ai~~~--~d~~a~g~~~~l~~~g~~di~vvg~d~ 220 (294)
T cd06316 176 IANAMLTQN-PDLKGIYAV--WDVPAEGVIAALRAAGRDDIKVTTVDL 220 (294)
T ss_pred HHHHHHHhC-CCeeEEEeC--CCchhHHHHHHHHHcCCCCceEEEeCC
Confidence 456666553 568999876 34457899999998874 799999875
No 498
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.72 E-value=1.7e+02 Score=24.06 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccC
Q 043209 110 IILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIG 184 (221)
Q Consensus 110 ~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G 184 (221)
+.+...|++|+.+..+ +...+.++++.++.+...++. .|....+ ....+..++.+++ +.+|.+|..+|
T Consensus 30 ~~la~~G~~V~l~~r~---~~~~~~~~~l~~~~~~~~~~~--~Dl~~~~-~v~~~~~~~~~~~-g~iD~lv~nAG 97 (272)
T PRK08159 30 KACRAAGAELAFTYQG---DALKKRVEPLAAELGAFVAGH--CDVTDEA-SIDAVFETLEKKW-GKLDFVVHAIG 97 (272)
T ss_pred HHHHHCCCEEEEEcCc---hHHHHHHHHHHHhcCCceEEe--cCCCCHH-HHHHHHHHHHHhc-CCCcEEEECCc
No 499
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=45.66 E-value=2.1e+02 Score=25.05 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=47.0
Q ss_pred HHHHHHHcCCEEEEeCCCCChhHHHHHHHHHHhhCCCeeecCCCCCCccHHHHHhhHHHHHHHhhCCCCCEEEEccCchh
Q 043209 108 KRIILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGG 187 (221)
Q Consensus 108 ~~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~p~G~Gg 187 (221)
-++..+++||+|+.++.+ ++..+.++++-+ .++++.. ++...+. ..| .+|.++..++ .-
T Consensus 182 avQ~Aka~ga~Via~~~~---~~K~e~a~~lGA----d~~i~~~-~~~~~~~-----~~~-------~~d~ii~tv~-~~ 240 (339)
T COG1064 182 AVQYAKAMGAEVIAITRS---EEKLELAKKLGA----DHVINSS-DSDALEA-----VKE-------IADAIIDTVG-PA 240 (339)
T ss_pred HHHHHHHcCCeEEEEeCC---hHHHHHHHHhCC----cEEEEcC-CchhhHH-----hHh-------hCcEEEECCC-hh
Confidence 467788899999999876 355566666633 2344433 2222211 111 2799999999 66
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC
Q 043209 188 TVSGVGNFLKKKNPEIKVYGVEP 210 (221)
Q Consensus 188 ~~~Gi~~~~~~~~~~~kvigVe~ 210 (221)
++--....++..+ .+-++|.-+
T Consensus 241 ~~~~~l~~l~~~G-~~v~vG~~~ 262 (339)
T COG1064 241 TLEPSLKALRRGG-TLVLVGLPG 262 (339)
T ss_pred hHHHHHHHHhcCC-EEEEECCCC
Confidence 6555555554432 344555553
No 500
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=45.55 E-value=2e+02 Score=24.88 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=14.0
Q ss_pred EEccCchhHHHHHHHHHHhc
Q 043209 180 VSGIGTGGTVSGVGNFLKKK 199 (221)
Q Consensus 180 v~p~G~Gg~~~Gi~~~~~~~ 199 (221)
++++|.|-|+..+...+-..
T Consensus 117 vigV~wGrTv~a~~~~l~~~ 136 (321)
T COG2390 117 VIGVGWGRTLSAVVDNLPPA 136 (321)
T ss_pred EEEEeccHHHHHHHHhcCcC
Confidence 66777777777777666544
Done!