RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043209
(221 letters)
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 385 bits (992), Expect = e-135
Identities = 134/220 (60%), Positives = 177/220 (80%)
Query: 2 GSEKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAE 61
G + IA+++++LIG TPMVYLN+I GC A IAAKLE+MEPC SVKDRI +SM+ DAE
Sbjct: 107 GPDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAE 166
Query: 62 EKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLIL 121
+KG I+PGK+VL+E TSGNTGIG+A AA++GY+LIL MPA MS+E+R++L+A+GA+L+L
Sbjct: 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL 226
Query: 122 TNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVS 181
T+ G+ + EE+L P ++ QF NPANPK HYETTGPEIW+ T+G+VDIFV+
Sbjct: 227 TDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVA 286
Query: 182 GIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221
GIGTGGT++GVG F+K+KNP+ +V GVEP ES IL+GGK
Sbjct: 287 GIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKP 326
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 381 bits (982), Expect = e-135
Identities = 142/214 (66%), Positives = 173/214 (80%)
Query: 8 IANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLIT 67
IA D+TELIGNTP+VYLNN+ +GC R+AAKLEMMEPCSSVKDRI FSMI DAE+KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMG 127
PG++VLIE TSGNTG+G+A AAAKGYKLI+ MPA MS E+RIIL A+G +L+LT+ G
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 128 IDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGG 187
+ EE+L K P + QF+NPANPK HYETTGPEIW+GT G++D FVSGIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 188 TVSGVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221
T++G G +LK++N +K+YGVEP ESAIL+GGK
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKP 218
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 377 bits (971), Expect = e-133
Identities = 92/218 (42%), Positives = 141/218 (64%), Gaps = 1/218 (0%)
Query: 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEK 63
+ +A I +LIG TP +YLN + + KA++ K+E P +SVKDR+ F++ AE++
Sbjct: 7 KSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKE 65
Query: 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123
G + PGK++++E +SGNTG+ +A A +GYK+I+ MP MSLE+R +L+ +GA++ILT
Sbjct: 66 GKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTP 125
Query: 124 AEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGI 183
A +G+ + ++++ P + QF N H ETTGPEIWE T VD F++G+
Sbjct: 126 AALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGV 185
Query: 184 GTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221
GTGGT++GV LKK ++ VEP ES +L+GGK
Sbjct: 186 GTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKP 223
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 376 bits (967), Expect = e-133
Identities = 107/218 (49%), Positives = 143/218 (65%), Gaps = 1/218 (0%)
Query: 4 EKCAIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEK 63
+IA DIT+LIG TP+V L + DG A I AKLE P +SVKDRI +M++ AE+
Sbjct: 2 SHMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQA 61
Query: 64 GLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTN 123
GLI P T+++E TSGNTGI +A AA+GY+ +L MP MSLE+R++L+AYGA+LILT
Sbjct: 62 GLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTP 120
Query: 124 AEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGI 183
G+ EEL F P QF+NPANP H TT E+W T G+VDI V+G+
Sbjct: 121 GADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGV 180
Query: 184 GTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221
GTGGT++GV +K++ P + VEPA S +L+GG+
Sbjct: 181 GTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQK 218
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 357 bits (920), Expect = e-126
Identities = 105/211 (49%), Positives = 146/211 (69%), Gaps = 2/211 (0%)
Query: 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGK- 70
+ IG TP+V L +V+ A + KLE + P S+KDR A+ MIKDAEE+G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDE 130
V++E TSGNTGIG+A AA++GY+LIL MPA MS E++ +L+A+GA+L+LT+ E +
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 EFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVS 190
L + +F P QFKNPAN + HYETTGPE++E G++D FV G GTGGT++
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221
GVG +LK++ P +KV VEPA S +L+GGK
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKM 212
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 354 bits (912), Expect = e-125
Identities = 91/217 (41%), Positives = 131/217 (60%), Gaps = 5/217 (2%)
Query: 7 AIANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLI 66
AI D + IGNTP+V L + G + K+E P SVK RI +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 67 TPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEM 126
T GK +++ TSGNTGI +A AAA+GYK+ L MP MSLE++ +L G L+LT
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 127 GIDEEFRIVEELLNKIPTSFN-PHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGT 185
G+ EE++ P+ + QF+NPANP+ H ETTGPEIW+ T G+VD+ V+G+GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 186 GGTVSGVGNFLK-KKNPEIKVYGVEPAESAILNGGKA 221
GG+++G+ +K +I VEP ES +++ A
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLA 215
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 352 bits (907), Expect = e-124
Identities = 117/214 (54%), Positives = 147/214 (68%), Gaps = 2/214 (0%)
Query: 8 IANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLIT 67
N ITELIG+TP V LN IVD A + KLE M P SSVKDRIA +MI+ AE+ G +
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMG 127
PG T ++E TSGNTGIG+A AAAKGYK +LVMP MSLE+R +L+AYGA+L+LT G
Sbjct: 64 PGDT-IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 128 IDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGG 187
+ EEL+ + F P QFKN ANP+ H TTG EI E Q+D FV+G+GTGG
Sbjct: 123 MRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 188 TVSGVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221
T++G G L++ P IK+Y VEPA+S +L+GGK
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKP 215
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 349 bits (899), Expect = e-122
Identities = 94/226 (41%), Positives = 136/226 (60%), Gaps = 7/226 (3%)
Query: 1 MGSEKCAIANDITELIGNTPMVYLNNIVDGCK----ARIAAKLEMMEPCSSVKDRIAFSM 56
+ S + I ++I E IG TP+V L+ + + + RI KLE P SSVKDR+ F++
Sbjct: 6 ISSPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNI 65
Query: 57 IKDAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYG 116
+ A + G + PG +IE TSGNTGI + A GY++ + MP+ MS+E+++I++A+G
Sbjct: 66 VYQAIKDGRLKPGME-IIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFG 124
Query: 117 AQLILTNAEMGIDEEFRIVEELLNKIPTS-FNPHQFKNPANPKTHYETTGPEIWEGTRGQ 175
A+LILT + G+ V +++ + P F +QF NP N H+ T EIWE T G+
Sbjct: 125 AELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGE 183
Query: 176 VDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGGKA 221
VDI VS +GT GTV GV LK+K IK+ VEP ESA+L G
Sbjct: 184 VDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAK 229
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 342 bits (879), Expect = e-120
Identities = 91/211 (43%), Positives = 132/211 (62%), Gaps = 2/211 (0%)
Query: 10 NDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPG 69
+ + + IGNTP+V L + + + KLE P SVKDR A SMI +AE++G I PG
Sbjct: 2 STLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG 61
Query: 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGID 129
LIE TSGNTGI +A AA KGY++ L+MP MS E+R ++AYGA+LIL E G++
Sbjct: 62 DV-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGME 120
Query: 130 EEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTV 189
+ E+ N+ QF NP NP HY TTGPEIW+ T G++ FVS +GT GT+
Sbjct: 121 GARDLALEMANRGE-GKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTI 179
Query: 190 SGVGNFLKKKNPEIKVYGVEPAESAILNGGK 220
+GV F+++++ + + G++P E + + G +
Sbjct: 180 TGVSRFMREQSKPVTIVGLQPEEGSSIPGIR 210
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 333 bits (857), Expect = e-116
Identities = 96/224 (42%), Positives = 139/224 (62%), Gaps = 11/224 (4%)
Query: 1 MGSEKCA--IANDITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIK 58
MGS+K + + LIG+TP+V L++I +RI KLE P SVKDR A MI
Sbjct: 1 MGSDKIHHHHHHMMERLIGSTPIVRLDSI----DSRIFLKLEKNNPGGSVKDRPALFMIL 56
Query: 59 DAEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQ 118
DAE++GL+ G ++E TSGN GI +A A +G+++IL MP MS+E+R +L+ GA+
Sbjct: 57 DAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAE 113
Query: 119 LILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDI 178
L+LT E+G+ E+ + + +QF+NP N +H TTGPEI + Q+D
Sbjct: 114 LVLTPGELGMKGAVEKALEISRETG-AHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDA 172
Query: 179 FVSGIGTGGTVSGVGNFLKKK-NPEIKVYGVEPAESAILNGGKA 221
FV+G+GTGGT+SGVG LK +K+ VEPA+S +L+GG+
Sbjct: 173 FVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQP 216
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 325 bits (836), Expect = e-113
Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 9/215 (4%)
Query: 7 AIANDITELIGNTPMVYLNNIV-------DGCKARIAAKLEMMEPCSSVKDRIAFSMIKD 59
+ + + +GNTP+V L + DG R+ AKLE P S+KDR A MI+
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63
Query: 60 AEEKGLITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQL 119
AE GL+ PG T ++E TSGNTGI +A A KGY+LI VMP S+E+R +L+ YGAQ+
Sbjct: 64 AEADGLLRPGAT-ILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122
Query: 120 ILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIF 179
I + AE G + +EL P+ +Q+ NPAN +HY TGPE+ ++ F
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHF 181
Query: 180 VSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
V+G+GT GT+ G G FL++ +K+ EP
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE 216
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 320 bits (822), Expect = e-108
Identities = 95/224 (42%), Positives = 130/224 (58%), Gaps = 11/224 (4%)
Query: 8 IANDITELIGNTPMVYLNNIV--DGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGL 65
I +I E+IG TP+V LNNI DG + + AK E + P SVKDRI + M++DAEE+GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125
+ PG T +IE TSGNTGIG+A A KGYK I+VMP MS EK L+ GA++I T E
Sbjct: 110 LKPGYT-IIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 126 MGIDEE---FRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSG 182
D + ++L + P S Q++N NP HY+ T EI +VD+ V
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 183 IGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAI-----LNGGKA 221
GT GT+SG+G +K++ P ++ GV+P S + LN
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDV 272
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 314 bits (806), Expect = e-107
Identities = 94/224 (41%), Positives = 132/224 (58%), Gaps = 11/224 (4%)
Query: 8 IANDITELIGNTPMVYLNNIV--DGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGL 65
I DI + IG+TPMV +N I G K + AK E SVKDRI+ MI+DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 66 ITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAE 125
+ PG T +IE TSGNTGIG+A AA +GY+ I+VMP MS EK +L+A GA+++ T
Sbjct: 158 LKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 126 MGIDEE---FRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSG 182
D + L N+IP S Q++N +NP HY+TT EI + G++D+ V+
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 183 IGTGGTVSGVGNFLKKKNPEIKVYGVEPAESAI-----LNGGKA 221
+GTGGT++G+ LK+K P ++ GV+P S + LN +
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQ 320
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 304 bits (780), Expect = e-104
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 9/212 (4%)
Query: 11 DITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCS-SVKDRIAFSMIKDAEEKGLITPG 69
D E TP+V + R+ KLE P S SVKDR A +I + + G
Sbjct: 89 DFFERGKPTPLVRSR-LQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGID 129
+ + TS N G+ ++ A GY+ + +P +++ + GAQ+I+
Sbjct: 146 SL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 130 EEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRG---QVDIFVSGIGTG 186
V + K + +QF N AN + H T EI+ +R + +GT
Sbjct: 205 HLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 187 GTVSGVGNFLKKKNPEIKVYGVEPAESAILNG 218
G +S +L+ +P I+ V+PA+ + G
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG 295
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 74.2 bits (183), Expect = 6e-16
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 17/182 (9%)
Query: 17 GNTPMVYLNNIVD--GCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLI 74
GNTP++ +N+ G K +I K E + P S KDR I A E G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 75 ECTSGNTGIGMACFAAAKGYKLILVMPA-FMSLEKRIILQAYGAQLILTNAEMGIDEEFR 133
++GNT A +AA G + +++P +++ K YGA+++ D+
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGT--FDDALN 141
Query: 134 IVEELLNKIPTSFNPHQFKNPANPKTH--YETTGPEIWEGTRGQVDIFVSGIGTGGTVSG 191
IV ++ P + N NP +T EI + D +G G ++
Sbjct: 142 IVRKIGEN-----FPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITA 196
Query: 192 VG 193
Sbjct: 197 YW 198
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 74.8 bits (184), Expect = 7e-16
Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 13/182 (7%)
Query: 17 GNTPMVYLNNIVD--GCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLI 74
GN+ + + + K + S KD ++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 75 ECTSGNTGIGMACFAAAKGYKLILVMPA-FMSLEKRIILQAYGAQLILTNAEMGIDEEFR 133
++G+T ++ + A+ G I+ +PA +S+ + + A GA ++ + D +
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMK 246
Query: 134 IVEELLNKIPTSFNPHQFKNPANPKTH--YETTGPEIWEGTRGQV-DIFVSGIGTGGTVS 190
++ E+ ++P N N +T EI + QV D + G G +
Sbjct: 247 LIREITAELPIYLA-----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301
Query: 191 GV 192
Sbjct: 302 AF 303
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 73.9 bits (182), Expect = 1e-15
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
Query: 17 GNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIEC 76
G TP++ N+ I K+E + P S KDR + DA G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 77 TSGNTGIGMACFAAAKGYKLILVMPAF-MSLEKRIILQAYGAQLILTNAEMGIDEEFRIV 135
++GNT A +AA G +++P +++ K +GA++I + D+ +
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELA 149
Query: 136 EELLNKIPTSFNPHQFKNPANPKTH--YETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVG 193
++ PT N NP +T EI + D+ +G G ++
Sbjct: 150 RKMAADFPTIS----LVNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 71.5 bits (176), Expect = 5e-15
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 17/182 (9%)
Query: 17 GNTPMVYLNNIVDGCK--ARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLI 74
G+TP++ L + K R+ AK E + P S KDR + A E G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 75 ECTSGNTGIGMACFAAAKGYKLILVMPA-FMSLEKRIILQAYGAQLILTNAEMGIDEEFR 133
++GNT A +AA G I+V+PA +++L K +GA+++ D+ R
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALR 139
Query: 134 IVEELLNKIPTSFNPHQFKNPANPKTH--YETTGPEIWEGTRGQVDIFVSGIGTGGTVSG 191
+ ++L P N NP +T E+ + +G G ++
Sbjct: 140 LTQKLTEA-----FPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 192 VG 193
Sbjct: 195 HW 196
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 71.4 bits (176), Expect = 6e-15
Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 30/214 (14%)
Query: 15 LIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIK---DAEEKGLITPGKT 71
TP++ + + K E ++P S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVC---- 59
Query: 72 VLIECTSGNTGIGMACFAAAK-GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDE 130
+ GN GI A +AA K G +V+P SL+ LQ GA++ LT DE
Sbjct: 60 ----SSGGNAGIAAA-YAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGK--VWDE 112
Query: 131 EFRIVEELLNKIPTSFNPHQFKNPANPKTHYE------TTGPEIWEGTRGQ-VDIFVSGI 183
+EL + P P H + E+ R + ++
Sbjct: 113 ANLRAQELAKRDGWENVP--------PFDHPLIWKGHASLVQELKAVLRTPPGALVLAVG 164
Query: 184 GTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILN 217
G G V L+ + + +E + N
Sbjct: 165 GGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFN 198
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 71.5 bits (176), Expect = 7e-15
Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 17/204 (8%)
Query: 19 TPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIK---DAEEKGLITPGKTVLIE 75
TP+ + + K++ +P S K R K +
Sbjct: 47 TPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC-------- 98
Query: 76 CTSGNTGIGMACFAAAK-GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFRI 134
++GN G+ A +AA + G +V+P L+ GA + +DE F +
Sbjct: 99 SSAGNAGMAAA-YAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFEL 155
Query: 135 VEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGN 194
+ L P F +P + H + E+ E + +G GG + GV
Sbjct: 156 AKALAKNNPGWVYIPPFDDPLIWEGH-ASIVKELKETLWEKPGAIALSVGGGGLLCGVVQ 214
Query: 195 FLKK-KNPEIKVYGVEPAESAILN 217
L++ ++ V +E + +
Sbjct: 215 GLQECGWGDVPVIAMETFGAHSFH 238
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 69.8 bits (172), Expect = 2e-14
Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 29/213 (13%)
Query: 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIK--DAEEK--GLIT 67
I + TP++ + + A + K E + + K R A + + + ++ G++T
Sbjct: 20 IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLT 79
Query: 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMG 127
+SGN +A A G ++MP K + YG Q+I+ +
Sbjct: 80 --------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIM--YDRY 129
Query: 128 IDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE------TTGPEIWEGTRGQVDIFVS 181
D+ ++ +E+ + + P P H T E++E G +D
Sbjct: 130 KDDREKMAKEISEREGLTIIP--------PYDHPHVLAGQGTAAKELFEEV-GPLDALFV 180
Query: 182 GIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
+G GG +SG + P +VYGVEP
Sbjct: 181 CLGGGGLLSGSALAARHFAPNCEVYGVEPEAGN 213
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 67.5 bits (166), Expect = 1e-13
Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 38/218 (17%)
Query: 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAE-EKGLITPGK 70
I TP++ + R+ K E ++ S K R A S E KGL+
Sbjct: 14 IAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA--- 70
Query: 71 TVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDE 130
+SGN G+A A G K ++VMP S K+ +AYGA+++ +
Sbjct: 71 -----VSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVD--RGVTAKN 123
Query: 131 EFRIVEELLNK-----IPTSFNPHQFKNPANPKTHYE------TTGPEIWE---GTRGQV 176
+ L + I F+ T G E+
Sbjct: 124 REEVARALQEETGYALIH-PFD------------DPLVIAGQGTAGLELLAQAGRMGVFP 170
Query: 177 DIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
++ +G GG ++G+ +K +P V GVEP +
Sbjct: 171 GAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 67.6 bits (166), Expect = 1e-13
Identities = 56/213 (26%), Positives = 82/213 (38%), Gaps = 29/213 (13%)
Query: 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIK--DAEEK--GLIT 67
+ I T M N + CK I K E M+ S K R AF+ + EK G++
Sbjct: 34 LAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVA 93
Query: 68 PGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMG 127
C++GN G++ A G +VMP K Y A+++L
Sbjct: 94 --------CSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGD--N 143
Query: 128 IDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE------TTGPEIWEGTRGQVDIFVS 181
++ V E++ F P P + T G EI E VD +
Sbjct: 144 FNDTIAKVSEIVETEGRIFIP--------PYDDPKVIAGQGTIGLEIMEDL-YDVDNVIV 194
Query: 182 GIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
IG GG ++G+ +K NP IKV GV+
Sbjct: 195 PIGGGGLIAGIAIAIKSINPTIKVIGVQAENVH 227
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 67.2 bits (165), Expect = 2e-13
Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 42/221 (19%)
Query: 12 ITELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMI-----KDAEEK--G 64
I + I TP++ + + + K E+ + S K R A + + E K
Sbjct: 19 IRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKA 78
Query: 65 LITPGKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNA 124
++T +SGN G + A +G +V+P K++ +QAYGA ++
Sbjct: 79 VVT--------HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVY--C 128
Query: 125 EMGIDEEFRIVEELLNK-----IPTSFNPHQFKNPANPKTHYE------TTGPEIWEGTR 173
E + + + + + + T E+
Sbjct: 129 EPSDESRENVAKRVTEETEGIMVH-PNQ------------EPAVIAGQGTIALEVLNQV- 174
Query: 174 GQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
VD V +G GG ++G+ +K P +KVY EP+ +
Sbjct: 175 PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNAD 215
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 62.2 bits (152), Expect = 1e-11
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 31/212 (14%)
Query: 14 ELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMI----KDAEEKGLITPG 69
++ +P+ + D K E + S K R A++M+ ++ +KG+IT
Sbjct: 56 DVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT-- 113
Query: 70 KTVLIECTSGNTGIGMACFAAAK-GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGI 128
++GN G+A A + +VMP K ++A G ++L
Sbjct: 114 ------ASAGNHAQGVA-LAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTF-- 164
Query: 129 DEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE------TTGPEIWEGTRGQVDIFVSG 182
DE EL K + F +P T G EI + +F+
Sbjct: 165 DEAQTHALELSEKDGLKY-IPPFDDP-------GVIKGQGTIGTEINRQLKDIHAVFIP- 215
Query: 183 IGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
+G GG ++GV F K+ P K+ GVEP +A
Sbjct: 216 VGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 62.5 bits (152), Expect = 1e-11
Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 14/156 (8%)
Query: 70 KTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGID 129
K T GN G G+A A G ++ MP + E+ + GA+ I+T +M D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVT--DMNYD 169
Query: 130 EEFRIVEELLNK-----IPTSFNPHQFKNPANPKTHYETTGPEIWEGTRGQ----VDIFV 180
+ R+ + + + + K P Y T E E R + +
Sbjct: 170 DTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLL 229
Query: 181 SGIGTGGTVSGVGNFLKK--KNPEIKVYGVEPAESA 214
G G GV +L + VEP ++
Sbjct: 230 -QAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKAD 264
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 60.7 bits (148), Expect = 4e-11
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 31/212 (14%)
Query: 14 ELIGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIK--DAEE--KGLITPG 69
E TP+ + + I K E +P S K R A++M+ E+ G+IT
Sbjct: 27 EAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT-- 84
Query: 70 KTVLIECTSGNTGIGMACFAAAK-GYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGI 128
++GN G+A F++A+ G K ++VMP + K ++ +G +++L A
Sbjct: 85 ------ASAGNHAQGVA-FSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NF 135
Query: 129 DEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYE------TTGPEIWEGTRGQVDIFVSG 182
DE EL + ++ F +P T E+ + +D
Sbjct: 136 DEAKAKAIELSQQQGFTW-VPPFDHP-------MVIAGQGTLALELLQQD-AHLDRVFVP 186
Query: 183 IGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
+G GG +GV +K+ P+IKV VE +SA
Sbjct: 187 VGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA 218
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 54.4 bits (131), Expect = 6e-09
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 22/160 (13%)
Query: 69 GKTVLIECTSGNTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGI 128
+ + ++GN G+ + +A G+K+ + M A K+ L+++G ++ E
Sbjct: 159 SQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEY--EQDY 216
Query: 129 DEEFRIVEELLNKIPTSFNPH-QFKNPANPKTH---YETTGPEIWEGTRGQVD------- 177
+ +P+ F + N +T Y G + Q
Sbjct: 217 GVAVEEGRKAAQS-----DPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNP 271
Query: 178 --IFVSGIGTGGTVSGVGNFLKKK-NPEIKVYGVEPAESA 214
+++ G GG GV LK + + EP S
Sbjct: 272 LFVYL-PCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 34/137 (24%)
Query: 94 YKLILVMPAFMSLEKRI--ILQAYGAQLILTNAEMGIDEEFRIVEELLNK----IPTSFN 147
I++ +S R+ L + +++ ++F VEE+L + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMV---------QKF--VEEVLRINYKFLMSPIK 99
Query: 148 PHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYG 207
+ + P+ Y ++ +F VS + +LK + +
Sbjct: 100 -TEQRQPSMMTRMYIEQRDRLYND----NQVFAK-----YNVSRLQPYLKLRQ---ALLE 146
Query: 208 VEPAESAILNG----GK 220
+ PA++ +++G GK
Sbjct: 147 LRPAKNVLIDGVLGSGK 163
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 36.6 bits (85), Expect = 0.004
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 14/129 (10%)
Query: 16 IGNTPMVYLNNIVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIE 75
+ N N +G A + + P + A+ M+ + +TPGK I+
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVN-PLT------AYLMLTHYVK---LTPGKDWFIQ 173
Query: 76 CTSGNTGIGMAC--FAAAKGYKLI-LVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEF 132
G + +G + I ++ E L+ GA ++T + E
Sbjct: 174 -NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFG 232
Query: 133 RIVEELLNK 141
++E + +
Sbjct: 233 PTIKEWIKQ 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.032
Identities = 47/314 (14%), Positives = 78/314 (24%), Gaps = 146/314 (46%)
Query: 1 MGSE---KCAIAND----------------ITELIGNTP--------------------- 20
MG + A D I +++ N P
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 21 MVYLNNIVDGCKARIAAKLEMMEPCSSVKDR------------------IAFSMIKDAEE 62
M++ IVDG E+ E +S R + + +D +
Sbjct: 1691 MIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 63 KGLITPGKTVLIECTSGNTGIGMACFA-------AAKGYKLILVMPA-FMSLE------- 107
KGLI A FA AA L A MS+E
Sbjct: 1750 KGLIPAD----------------ATFAGHSLGEYAA------LASLADVMSIESLVEVVF 1787
Query: 108 KRIILQAYGA---QLILTNAEM----------GIDEEFRIVEELLNKIPTSFNPHQFKNP 154
R + +L +N M +E ++ ++ ++
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE--ALQYVVERVGKRTG--WLVEI 1843
Query: 155 ANPKTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVG------NFLKKKNPEIKV--- 205
N Y Q V+ G + + NF+K + I +
Sbjct: 1844 VN----YNVEN--------QQY---VA----AGDLRALDTVTNVLNFIKLQK--IDIIEL 1882
Query: 206 ---YGVEPAESAIL 216
+E E +
Sbjct: 1883 QKSLSLEEVEGHLF 1896
Score = 33.1 bits (75), Expect = 0.065
Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 53/145 (36%)
Query: 60 AEEKGLITPGKTVLIECTSGNTGIGMA-----CFAAAKGYKLILVMPAFMSLEKRII--- 111
A+ G TPG+ L G TG A + +F ++ I
Sbjct: 253 AKLLGF-TPGE--LRSYLKGATGHSQGLVTAVAIAETDSW------ESFFVSVRKAITVL 303
Query: 112 -------LQAYGAQLI--------LTNAE-----M----GIDEEFRIVEELLNKIPTSFN 147
+AY + L N E M + +E V++ +NK N
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNK----TN 357
Query: 148 PHQFKNPA------NPKTHYETTGP 166
H N + +GP
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGP 382
Score = 32.7 bits (74), Expect = 0.10
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 34/122 (27%)
Query: 120 ILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNP-------ANPKTHYETTGPEI---- 168
+L A I+++ L K SFN + P ++ + + I
Sbjct: 431 LLVPASDLINKD-------LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 169 ------WEGTRGQVDIFVSGI---GTGGTVSGVGNFLKKKNPEIKVYGVEPAESAILNGG 219
WE T + I G GG SG+G L +N + GV + L+
Sbjct: 484 IRLPVKWETT---TQFKATHILDFGPGG-ASGLGV-LTHRNKDGT--GVRVIVAGTLDIN 536
Query: 220 KA 221
Sbjct: 537 PD 538
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 31.0 bits (71), Expect = 0.22
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 70 KTVLIECTSGNTGIGMAC--FAAAKGYKLILV 99
++I T ++G+G A+G L
Sbjct: 2 SLIVI--TGASSGLGAELAKLYDAEGKATYLT 31
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 30.2 bits (68), Expect = 0.54
Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 27/220 (12%)
Query: 17 GNTPMVYLNNIVD--GCKARIAAK-LEMMEPCSSV--KDRIAFSMIKDAEEKGLITPGKT 71
G TP+ L + G K + AK + + K R +I +A +G
Sbjct: 14 GPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQG-----CD 68
Query: 72 VLIECTSG--NTGIGMACFAAAKGYKLILVMPAFMSLEKRIILQAYGAQLI-LTNAEMGI 128
L+ N +A AA G K +LV +++ + + Q+ + A++ +
Sbjct: 69 TLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRL 128
Query: 129 DEE------FRIVEELLNKIPTSFNPHQF-----KNPANPKTHY---ETTGPEIWEGTRG 174
+ R E+ L + + + +
Sbjct: 129 VPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGF 188
Query: 175 QVDIFVSGIGTGGTVSGVGNFLKKKNPEIKVYGVEPAESA 214
+ D V TG T +G+ +V GV+ +
Sbjct: 189 KFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKP 228
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 30.2 bits (68), Expect = 0.55
Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 40/156 (25%)
Query: 53 AFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMAC--FAAAKGYKLILVMPAFMSLEKRI 110
A+ + G+ G VLI SG G+G FA A G I V+ S +K
Sbjct: 214 AYRQLVSRNGAGM-KQGDNVLIWGASG--GLGSYATQFALAGGANPICVVS---SPQKAE 267
Query: 111 ILQAYGAQLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIWE 170
I +A GA E ++++ + + +N +PK G I E
Sbjct: 268 ICRAMGA------------------EAIIDRNAEGYRFWKDENTQDPKEWKR-FGKRIRE 308
Query: 171 GTRGQ-VDIFVSGIG------------TGGTVSGVG 193
T G+ +DI G GGT++
Sbjct: 309 LTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCA 344
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 29.5 bits (67), Expect = 0.79
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 53 AFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMAC--FAAAKGYKLI-LVMPAFMSLEKR 109
A+ M+ D + PG +V+ + N+G+G A AAA G + I +V +
Sbjct: 155 AYRMLMD---FEQLQPGDSVIQ--NASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLS 209
Query: 110 IILQAYGAQLILTNAEMGIDEEFRIV 135
L++ GA+ ++T E+ E
Sbjct: 210 DRLKSLGAEHVITEEELRRPEMKNFF 235
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.92
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 196 LKKKNPEIKVYGVEPAESA 214
LKK +K+Y +SA
Sbjct: 22 LKKLQASLKLY--AD-DSA 37
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 29.1 bits (66), Expect = 1.1
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 69 GKTVLIECTSGNTGIGMAC---FAAAKGYKLILV 99
T+ I T +G G AC FA A G+ L+L
Sbjct: 21 SSTLFI--TGATSGFGEACARRFAEA-GWSLVLT 51
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 28.8 bits (65), Expect = 1.2
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 147 NPHQFKNPANPKTHYETTGPEIWEGTRGQVDIFVSGIGTG--GTV-SGVGNFLKKKNPEI 203
+ H NP ++ ++ E R + + G+G G G V G + + +
Sbjct: 3 HHHHHHNPNYCFAGKTSSISDLKEVPRKNI-TLIRGLGHGAFGEVYEGQVSGMPNDPSPL 61
Query: 204 KV 205
+V
Sbjct: 62 QV 63
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 29.0 bits (65), Expect = 1.3
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 16/144 (11%)
Query: 53 AFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMAC--FAAAKGYKLILVMPAFMSLEKRI 110
A+ M+ + + G VLI SG G+G F G + V+ S +K
Sbjct: 206 AYRMLVS-DRGAQMKQGDIVLIWGASG--GLGSYAIQFVKNGGGIPVAVVS---SAQKEA 259
Query: 111 ILQAYGA-QLILTNAEMGIDEEFRIVEELLNKIPTSFNPHQFKNPANPKTHYETTGPEIW 169
++A G +I D+ ++ K P +E TG +
Sbjct: 260 AVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTF 319
Query: 170 EGTRGQVDIFVSGIGTGGTVSGVG 193
+ V GGTV G
Sbjct: 320 GLS-------VIVARRGGTVVTCG 336
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 28.5 bits (63), Expect = 1.3
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 158 KTHYETTGPEIWEGTRGQVDIFVSGIGTGGTVSGVGNFLK---KKNPEIKVYGVEPAESA 214
+ +E R Q D V +GTG G ++NP V ++ +S
Sbjct: 9 GKRVQEFSDAEFEQLRSQYDDVVLDVGTGD-----GKHPYKVARQNPSRLVVALDADKSR 63
Query: 215 ILN 217
+
Sbjct: 64 MEK 66
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 69 GKTVLIECTSGNTGIGMACFA---AAKGYKLILV 99
K V+I T ++GIG A A + +G+ L+L+
Sbjct: 16 KKLVVI--TGASSGIGEAI-ARRFSEEGHPLLLL 46
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading
domain, transferase; HET: DNA U5P; 1.60A {Escherichia
coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
2xy8_A*
Length = 194
Score = 28.3 bits (64), Expect = 1.4
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 133 RIVE----ELLNKIPTSFNPHQFKNP 154
+I+E E++N+ T N H + P
Sbjct: 32 KIIEIGAVEVVNRRLTGNNFHVYLKP 57
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 28.4 bits (63), Expect = 1.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 67 TPGKTVLIECTSGNTGIGMA-CFA-AAKGYKLIL 98
T + ++ T GN GIG C ++ G ++L
Sbjct: 10 TKRRCAVV--TGGNKGIGFEICKQLSSNGIMVVL 41
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 28.0 bits (62), Expect = 2.8
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 133 RIVEELLNKIPTSFNPHQFKNPANPKTH-YETTGPEIWEGTRGQVDIFVSGIGTGGTVSG 191
+ + P P T +E+ + E ++ + + G
Sbjct: 286 TLNSDGYTPEPARITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNLLIADIELG 345
Query: 192 VGNF-------LKKKNPEIKV 205
GNF + + +I V
Sbjct: 346 CGNFGSVRQGVYRMRKKQIDV 366
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5
P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A*
3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 27.3 bits (61), Expect = 3.4
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 67 TPGKTVLIECTSGNTGIGMAC---FAAAKGYKLIL 98
+ L+ T GN GIG+A ++L
Sbjct: 2 SGIHVALV--TGGNKGIGLAIVRDLCRLFSGDVVL 34
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 27.6 bits (61), Expect = 3.5
Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 29 DGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMACF 88
+G A + P + A M++ + ++ + N G +
Sbjct: 143 EGATPADGASS-FVNPLT------ALGMVETMRLE----GHSALVHTAAASNLGQMLNQI 191
Query: 89 AAAKGYKLILVMPAFMSLEKRIILQAYGAQLILTNAEMGIDEEFR 133
G KL+ ++ E+ +L+A GA + A ++
Sbjct: 192 CLKDGIKLVNIVR---KQEQADLLKAQGAVHVCNAASPTFMQDLT 233
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: FMN;
2.30A {Streptococcus mutans} SCOP: d.90.1.1
Length = 208
Score = 27.2 bits (60), Expect = 3.9
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 129 DEEFRIVEELLNKIPTSFNP-------------HQFKNPANPKTHYETTGPEIWEGTRGQ 175
E +++ + + P++FN F N + T E + GT+ +
Sbjct: 26 AELVALIQNAIKQAPSAFNSQTSRALVLFGQDSQDFWNKIAYSELEKVTPAEAFAGTKAK 85
Query: 176 VDIFVSGIGT 185
++ F +G+GT
Sbjct: 86 LESFAAGVGT 95
>2wqf_A Copper induced nitroreductase D; COPR regulated protein,
oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Length = 202
Score = 26.8 bits (59), Expect = 4.4
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 18/75 (24%)
Query: 129 DEEFRIVEELLNKIPTSFN------------PHQ------FKNPANPKTHYETTGPEIWE 170
++ ++E + PT+FN + W+
Sbjct: 24 EKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDKLWDEIVAPELKAAMEAQGVPESAWD 83
Query: 171 GTRGQVDIFVSGIGT 185
TR ++D F + GT
Sbjct: 84 NTRAKLDGFKAAFGT 98
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 27.1 bits (61), Expect = 5.0
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 69 GKTVLIECTSGNTGIGMAC---FAAAKGYKLILV 99
G+ VL+ T GIG A G +++ V
Sbjct: 7 GRRVLV--TGAGKGIGRGTVQALHAT-GARVVAV 37
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins
(A/B), NAD(P)-binding rossmann-fold structural
genomics, NPPSFA; HET: NAP; 2.20A {Thermus
thermophilus}
Length = 207
Score = 26.7 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 71 TVLIECTSGNTGIGMACFAAAKGYKLILV 99
VLI T G+G A A KG+ L+L
Sbjct: 2 RVLI--TGATGGLGGAFARALKGHDLLLS 28
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 25.7 bits (57), Expect = 6.1
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 67 TPGKTVLIECTSGNTGIG 84
G+TV ++C +
Sbjct: 13 NLGETVELKCQVLLSNPT 30
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 26.8 bits (59), Expect = 6.2
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 158 KTHYETTGPEIWEGTRGQVDIFVSGIGTGGTV----SGVGNFLKK-KNPEIKVYGVEPAE 212
+E E + ++ ++ V G G FL+ K I+ GV+ E
Sbjct: 14 YFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINE 73
Query: 213 SAI 215
I
Sbjct: 74 DMI 76
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase;
HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 26.7 bits (60), Expect = 6.6
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 69 GKTVLIECTSGNTGIGMAC---FAAAKGYKLILV 99
G L+ T GIG A+ G K++ V
Sbjct: 7 GLRALV--TGAGKGIGRDTVKALHAS-GAKVVAV 37
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 26.2 bits (57), Expect = 7.4
Identities = 12/69 (17%), Positives = 19/69 (27%)
Query: 27 IVDGCKARIAAKLEMMEPCSSVKDRIAFSMIKDAEEKGLITPGKTVLIECTSGNTGIGMA 86
+ D + + ++D + V+ C SGN IG A
Sbjct: 38 VPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAA 97
Query: 87 CFAAAKGYK 95
A G
Sbjct: 98 EVATEAGIT 106
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 26.0 bits (58), Expect = 9.4
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 62 EKGLITPGKTVLIECTSGNTGIGMAC--FAAAKGYKLI 97
+K + PG VL+ G+ +A A G ++I
Sbjct: 160 DKLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVI 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,496,680
Number of extensions: 218574
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 83
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)