BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043214
(793 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 29/204 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G++ +
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVDVKAM 239
Query: 673 DEMRGVKNIVYDLDREGFPKLKHP 696
V ++ D + + FP K+P
Sbjct: 240 --TSNVASVQCD-NSDKFPVYKYP 260
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 29/204 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 129
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G++ +
Sbjct: 190 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVDVKAM 240
Query: 673 DEMRGVKNIVYDLDREGFPKLKHP 696
V ++ D + + FP K+P
Sbjct: 241 --TSNVASVQCD-NSDKFPVYKYP 261
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 29/204 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G++ +
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVDVKAM 239
Query: 673 DEMRGVKNIVYDLDREGFPKLKHP 696
V ++ D + + FP K+P
Sbjct: 240 TS--NVASVQCD-NSDKFPVYKYP 260
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 29/204 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G++ +
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVDVKAM 239
Query: 673 DEMRGVKNIVYDLDREGFPKLKHP 696
V ++ D + + FP K+P
Sbjct: 240 TS--NVASVQCD-NSDKFPVYKYP 260
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 35/207 (16%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G+
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGV----- 234
Query: 673 DEMRGVKNIVYDL---DREGFPKLKHP 696
+++ V + V + + + FP K+P
Sbjct: 235 -DVKAVTSNVASVQCDNSDKFPVYKYP 260
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 29/204 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G++ +
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVDVKAM 239
Query: 673 DEMRGVKNIVYDLDREGFPKLKHP 696
V ++ D + + FP K+P
Sbjct: 240 --TSNVASVQCD-NSDKFPVYKYP 260
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 26/176 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIE 668
KG L + G+ W L N IL + WL+D +V++ +G++
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVD 235
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 29/211 (13%)
Query: 502 DYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLS 561
D + + G L L L + ++ P +GQ +P L
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 562 SLSRLEELYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQI 608
L L+ELY+ ++ GL NN ++ L L L L +Q
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 609 QDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMK 665
+PKG L + G+ W L N IL + WL+D +V++ +
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQ 232
Query: 666 GIEELYLDEMRGVKNIVYDLDREGFPKLKHP 696
G++ + V ++ D + + FP K+P
Sbjct: 233 GVDVKAM--TSNVASVQCD-NSDKFPVYKYP 260
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 29/204 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G++ +
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVDVKAM 239
Query: 673 DEMRGVKNIVYDLDREGFPKLKHP 696
V ++ D + + FP K+P
Sbjct: 240 --TSNVASVQCD-NSDKFPVYKYP 260
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 29/204 (14%)
Query: 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTXXXXXXXXXXXXXKVIPSNVLSSLSRLEE 568
+ + G L L L + ++ P +GQ +P L L L+E
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 569 LYMGYTFVEWEIEGL-------------NNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615
LY+ ++ GL NN ++ L L L L +Q +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 616 KGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD---DVFMQMKGIEELYL 672
KG L + G+ W L N IL + WL+D +V++ +G++ +
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-----LCNCEILYFR----RWLQDNAENVYVWKQGVDVKAM 239
Query: 673 DEMRGVKNIVYDLDREGFPKLKHP 696
V ++ D + + FP K+P
Sbjct: 240 --TSNVASVQCD-NSDKFPVYKYP 260
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 KSNFENLKNEIGKLRVARESVL--HRVDDAKRNGEDIEQKVEKWLSDVDKIMDAA 83
K + L+ + +L R+S H V+DA R +D+++++EK L +++++ +A
Sbjct: 44 KHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSA 98
>pdb|2KQ9|A Chain A, Solution Structure Of Dnak Suppressor Protein From
Agrobacterium Tumefaciens C58. Northeast Structural
Genomics Consortium Target Att12ONTARIO CENTER FOR
STRUCTURAL PROTEOMICS TARGET ATC0888
Length = 112
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 52 LHRVD---DAKRNGEDIEQKVEKWLSDVDKIMDAAGQIIEDEERAKNSRCFRGLCPNLTT 108
LH+++ + RN +D ++ E+ D+++D GQ+ +DE RA ++ R T
Sbjct: 27 LHKIEADFEEPRNPDDEDRASER---SNDEVLDELGQVGQDELRAIDAALARIASGTFGT 83
Query: 109 CYQFSKKAAKE 119
C + K+ +++
Sbjct: 84 CVKCGKRISED 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,667,879
Number of Sequences: 62578
Number of extensions: 797028
Number of successful extensions: 1947
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1935
Number of HSP's gapped (non-prelim): 18
length of query: 793
length of database: 14,973,337
effective HSP length: 107
effective length of query: 686
effective length of database: 8,277,491
effective search space: 5678358826
effective search space used: 5678358826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)