Query 043214
Match_columns 793
No_of_seqs 380 out of 4194
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.1E-76 8.8E-81 675.1 38.5 515 30-549 19-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.3E-63 5E-68 603.1 45.7 646 66-789 133-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.6E-35 5.7E-40 307.5 11.6 221 128-351 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 7.6E-24 1.7E-28 258.6 21.2 175 423-611 118-296 (968)
5 PLN00113 leucine-rich repeat r 99.9 9.7E-24 2.1E-28 257.7 21.0 342 421-786 91-465 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.6E-24 5.6E-29 223.5 -3.8 321 419-764 51-379 (1255)
7 PLN03210 Resistant to P. syrin 99.9 5.5E-21 1.2E-25 233.3 21.8 286 472-791 590-887 (1153)
8 KOG4194 Membrane glycoprotein 99.8 4.6E-22 9.9E-27 205.9 4.8 336 421-780 100-446 (873)
9 KOG0444 Cytoskeletal regulator 99.8 4.2E-22 9.1E-27 207.2 -6.6 337 419-787 28-376 (1255)
10 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.3E-25 195.9 2.1 335 423-786 125-480 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 2.4E-21 5.2E-26 192.2 -6.4 196 420-632 111-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 4.8E-20 1E-24 183.0 -7.0 256 425-702 47-308 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.8E-17 8.3E-22 178.9 -0.4 330 425-791 47-424 (1081)
14 KOG0618 Serine/threonine phosp 99.6 2.6E-16 5.7E-21 172.5 0.3 218 516-761 241-490 (1081)
15 KOG4658 Apoptotic ATPase [Sign 99.6 2.4E-15 5.3E-20 174.3 7.5 327 434-789 512-863 (889)
16 KOG0617 Ras suppressor protein 99.6 7.5E-17 1.6E-21 142.0 -4.3 167 435-618 23-192 (264)
17 PRK15387 E3 ubiquitin-protein 99.6 2.7E-14 5.9E-19 162.0 15.0 253 426-758 204-456 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 4.3E-14 9.4E-19 160.4 15.6 254 473-784 203-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.5 2.3E-13 4.9E-18 155.7 12.3 244 424-702 179-426 (754)
20 PRK15370 E3 ubiquitin-protein 99.5 2E-13 4.4E-18 156.1 10.9 246 446-758 179-426 (754)
21 KOG0617 Ras suppressor protein 99.4 3.7E-15 8.1E-20 131.4 -3.0 158 419-581 29-190 (264)
22 KOG4237 Extracellular matrix p 99.2 1.6E-12 3.4E-17 130.0 -1.9 233 447-702 69-357 (498)
23 KOG4237 Extracellular matrix p 99.1 2.2E-12 4.7E-17 129.0 -3.3 105 472-577 68-177 (498)
24 cd00116 LRR_RI Leucine-rich re 99.1 8.5E-11 1.8E-15 124.9 5.2 266 467-757 19-317 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-10 2.3E-15 124.1 5.4 36 665-702 250-289 (319)
26 KOG0532 Leucine-rich repeat (L 98.9 1.6E-10 3.4E-15 121.2 -2.0 173 427-618 79-253 (722)
27 PF14580 LRR_9: Leucine-rich r 98.9 2.2E-09 4.9E-14 100.1 5.2 129 469-606 17-147 (175)
28 PF14580 LRR_9: Leucine-rich r 98.8 8.4E-09 1.8E-13 96.3 6.3 101 470-571 41-147 (175)
29 KOG0532 Leucine-rich repeat (L 98.8 3.9E-10 8.5E-15 118.3 -3.2 150 422-578 97-248 (722)
30 KOG1259 Nischarin, modulator o 98.7 2.2E-09 4.8E-14 103.8 -0.8 135 470-617 283-417 (490)
31 KOG3207 Beta-tubulin folding c 98.7 5.1E-09 1.1E-13 106.8 1.3 213 514-757 119-336 (505)
32 KOG4341 F-box protein containi 98.7 1.6E-09 3.4E-14 109.9 -2.7 145 639-787 292-440 (483)
33 PRK04841 transcriptional regul 98.6 8.7E-07 1.9E-11 108.3 18.1 246 124-398 15-332 (903)
34 KOG4341 F-box protein containi 98.6 4.2E-09 9.1E-14 106.8 -3.3 114 663-780 344-459 (483)
35 KOG1259 Nischarin, modulator o 98.5 2.2E-08 4.7E-13 97.0 -0.4 125 423-551 284-411 (490)
36 COG4886 Leucine-rich repeat (L 98.5 1.6E-07 3.6E-12 102.7 5.6 155 445-616 116-272 (394)
37 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.8E-12 102.5 4.9 177 423-617 116-295 (394)
38 KOG3207 Beta-tubulin folding c 98.4 4.5E-08 9.8E-13 100.1 0.2 179 422-611 145-338 (505)
39 KOG1909 Ran GTPase-activating 98.4 6.2E-08 1.4E-12 96.4 1.1 92 664-758 212-309 (382)
40 KOG2120 SCF ubiquitin ligase, 98.4 9.9E-09 2.1E-13 99.4 -4.5 182 517-730 186-373 (419)
41 PLN03150 hypothetical protein; 98.4 5.9E-07 1.3E-11 103.1 8.9 101 473-574 420-525 (623)
42 TIGR03015 pepcterm_ATPase puta 98.3 1.1E-05 2.3E-10 83.2 14.9 131 142-272 41-242 (269)
43 PLN03150 hypothetical protein; 98.2 2.7E-06 5.9E-11 97.6 8.8 109 446-556 419-532 (623)
44 PF13173 AAA_14: AAA domain 98.2 1.1E-06 2.5E-11 78.8 4.5 92 144-236 2-100 (128)
45 PRK00411 cdc6 cell division co 98.2 0.00012 2.7E-09 80.0 21.4 88 122-209 29-150 (394)
46 KOG2120 SCF ubiquitin ligase, 98.2 5.8E-08 1.3E-12 94.2 -5.0 173 423-609 185-373 (419)
47 PF13855 LRR_8: Leucine rich r 98.1 2.2E-06 4.8E-11 65.4 3.9 12 473-484 3-14 (61)
48 PF01637 Arch_ATPase: Archaeal 98.1 6.2E-06 1.3E-10 83.0 8.1 45 125-169 1-45 (234)
49 cd00009 AAA The AAA+ (ATPases 98.1 1.1E-05 2.4E-10 74.5 9.0 111 126-236 1-131 (151)
50 PF05729 NACHT: NACHT domain 98.1 4.6E-06 1E-10 78.9 6.3 91 145-235 1-130 (166)
51 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 4.9E-11 65.4 3.3 60 445-506 1-61 (61)
52 COG2909 MalT ATP-dependent tra 98.1 3.7E-05 8.1E-10 86.0 13.4 243 133-398 25-338 (894)
53 PRK00080 ruvB Holliday junctio 98.1 1.6E-05 3.4E-10 84.2 10.3 50 121-170 23-77 (328)
54 KOG3665 ZYG-1-like serine/thre 98.0 2E-06 4.3E-11 98.3 2.3 148 422-571 121-282 (699)
55 COG2256 MGS1 ATPase related to 98.0 3.4E-05 7.3E-10 79.2 10.2 125 135-262 39-184 (436)
56 TIGR00635 ruvB Holliday juncti 98.0 0.00032 7E-09 73.7 18.2 49 122-170 3-56 (305)
57 TIGR02928 orc1/cdc6 family rep 98.0 0.0014 2.9E-08 71.0 23.4 47 122-168 14-64 (365)
58 PRK13342 recombination factor 98.0 5.5E-05 1.2E-09 82.7 12.1 107 122-231 11-125 (413)
59 PRK15386 type III secretion pr 97.9 3.8E-05 8.2E-10 80.8 9.3 54 515-574 51-104 (426)
60 KOG1859 Leucine-rich repeat pr 97.9 3.5E-07 7.5E-12 99.1 -6.0 176 420-611 106-291 (1096)
61 KOG1909 Ran GTPase-activating 97.9 6.2E-06 1.4E-10 82.5 1.9 13 690-702 269-281 (382)
62 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 4.9E-10 54.8 3.4 37 472-508 2-38 (44)
63 PLN03025 replication factor C 97.8 0.00025 5.5E-09 74.7 13.0 112 123-235 13-139 (319)
64 PRK15386 type III secretion pr 97.8 8.7E-05 1.9E-09 78.2 8.8 62 468-534 49-113 (426)
65 KOG2982 Uncharacterized conser 97.8 7.4E-06 1.6E-10 79.9 0.6 67 663-735 197-264 (418)
66 KOG0531 Protein phosphatase 1, 97.8 3.2E-06 6.9E-11 92.7 -2.2 128 444-577 71-199 (414)
67 KOG0531 Protein phosphatase 1, 97.7 7E-06 1.5E-10 90.1 -0.3 167 429-615 78-248 (414)
68 COG5238 RNA1 Ran GTPase-activa 97.7 1.5E-05 3.2E-10 76.8 1.7 136 469-612 28-198 (388)
69 PRK04195 replication factor C 97.7 0.0014 2.9E-08 73.3 17.0 110 122-235 13-140 (482)
70 PTZ00202 tuzin; Provisional 97.6 0.0013 2.9E-08 69.0 15.1 50 121-170 260-312 (550)
71 PHA02544 44 clamp loader, smal 97.6 0.00072 1.6E-08 71.5 13.0 113 122-236 20-142 (316)
72 PRK06893 DNA replication initi 97.6 0.0002 4.4E-09 71.3 8.1 89 144-235 39-134 (229)
73 PF12799 LRR_4: Leucine Rich r 97.6 7.9E-05 1.7E-09 52.0 3.5 34 517-550 2-35 (44)
74 PRK13341 recombination factor 97.6 0.00071 1.5E-08 78.1 13.3 109 122-233 27-144 (725)
75 COG3899 Predicted ATPase [Gene 97.6 0.0009 2E-08 79.2 14.5 89 246-343 238-333 (849)
76 KOG1859 Leucine-rich repeat pr 97.6 2.8E-06 6E-11 92.4 -5.9 122 423-550 164-290 (1096)
77 KOG3665 ZYG-1-like serine/thre 97.5 5.6E-05 1.2E-09 86.6 3.8 105 445-549 122-230 (699)
78 PRK08727 hypothetical protein; 97.5 0.00062 1.3E-08 68.0 10.8 102 131-236 28-137 (233)
79 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00012 2.6E-09 73.3 5.4 105 128-234 22-132 (226)
80 KOG2982 Uncharacterized conser 97.5 4.5E-05 9.8E-10 74.6 2.1 82 468-549 68-156 (418)
81 TIGR02903 spore_lon_C ATP-depe 97.5 0.0058 1.3E-07 70.0 19.5 48 121-168 152-199 (615)
82 PRK07003 DNA polymerase III su 97.5 0.00071 1.5E-08 76.3 11.7 116 121-236 14-160 (830)
83 COG3903 Predicted ATPase [Gene 97.5 0.00012 2.6E-09 75.7 5.1 242 143-397 13-313 (414)
84 PF13191 AAA_16: AAA ATPase do 97.5 0.00013 2.7E-09 70.4 4.6 47 124-170 1-50 (185)
85 PRK14957 DNA polymerase III su 97.4 0.0013 2.7E-08 73.3 12.4 115 121-235 14-159 (546)
86 PRK05564 DNA polymerase III su 97.4 0.0015 3.3E-08 68.7 12.5 114 122-236 3-134 (313)
87 PRK12402 replication factor C 97.4 0.00091 2E-08 71.5 11.1 47 122-168 14-60 (337)
88 PF05496 RuvB_N: Holliday junc 97.4 0.00068 1.5E-08 65.1 8.1 86 121-209 22-113 (233)
89 PRK09087 hypothetical protein; 97.3 0.0017 3.7E-08 64.3 11.0 81 144-236 44-128 (226)
90 KOG4579 Leucine-rich repeat (L 97.3 1.9E-05 4.2E-10 68.2 -2.5 106 426-533 30-140 (177)
91 PRK14956 DNA polymerase III su 97.3 0.0012 2.5E-08 71.6 10.3 114 122-235 17-161 (484)
92 TIGR01242 26Sp45 26S proteasom 97.3 0.00035 7.6E-09 75.1 6.3 88 122-209 121-227 (364)
93 PRK12323 DNA polymerase III su 97.3 0.012 2.6E-07 65.8 17.9 116 121-236 14-165 (700)
94 PRK00440 rfc replication facto 97.3 0.0018 4E-08 68.5 11.4 114 122-235 16-142 (319)
95 PF13401 AAA_22: AAA domain; P 97.3 0.00073 1.6E-08 60.9 7.1 88 144-233 4-124 (131)
96 PF00004 AAA: ATPase family as 97.3 0.0005 1.1E-08 62.0 6.0 63 147-209 1-70 (132)
97 PHA00729 NTP-binding motif con 97.3 0.00088 1.9E-08 65.0 7.7 73 134-206 7-91 (226)
98 PRK08084 DNA replication initi 97.3 0.0018 3.9E-08 64.8 10.3 103 130-236 31-142 (235)
99 PRK14961 DNA polymerase III su 97.2 0.0016 3.5E-08 69.8 10.3 115 122-236 15-160 (363)
100 PRK14963 DNA polymerase III su 97.2 0.0016 3.4E-08 72.3 9.9 112 122-235 13-156 (504)
101 PTZ00112 origin recognition co 97.2 0.012 2.6E-07 67.3 16.3 47 123-169 755-806 (1164)
102 KOG1644 U2-associated snRNP A' 97.2 0.0005 1.1E-08 63.9 4.6 105 494-608 42-149 (233)
103 PRK14960 DNA polymerase III su 97.1 0.0036 7.9E-08 70.0 12.0 116 121-236 13-159 (702)
104 KOG2028 ATPase related to the 97.1 0.0013 2.7E-08 66.5 7.4 99 135-235 153-261 (554)
105 COG0466 Lon ATP-dependent Lon 97.1 0.0078 1.7E-07 66.8 13.9 46 125-170 325-376 (782)
106 CHL00095 clpC Clp protease ATP 97.1 0.0013 2.8E-08 78.3 8.8 89 120-208 176-282 (821)
107 TIGR02639 ClpA ATP-dependent C 97.1 0.0016 3.6E-08 76.5 9.3 89 121-209 180-286 (731)
108 KOG1644 U2-associated snRNP A' 97.1 0.0014 3.1E-08 61.0 6.6 82 467-548 60-149 (233)
109 PRK14949 DNA polymerase III su 97.1 0.0031 6.7E-08 72.8 10.7 116 121-236 14-160 (944)
110 PRK07261 topology modulation p 97.0 0.0015 3.3E-08 61.7 6.9 61 146-209 2-69 (171)
111 PRK14962 DNA polymerase III su 97.0 0.0049 1.1E-07 67.9 11.7 47 122-168 13-60 (472)
112 PRK06620 hypothetical protein; 97.0 0.0015 3.3E-08 64.1 6.8 78 145-236 45-124 (214)
113 KOG1947 Leucine rich repeat pr 97.0 0.00014 3E-09 82.1 -0.5 111 492-611 186-307 (482)
114 PRK08691 DNA polymerase III su 97.0 0.0023 4.9E-08 72.2 8.8 116 121-236 14-160 (709)
115 PRK14955 DNA polymerase III su 97.0 0.0093 2E-07 64.8 13.2 112 122-233 15-165 (397)
116 PRK05896 DNA polymerase III su 96.9 0.0088 1.9E-07 66.8 12.8 47 122-168 15-62 (605)
117 KOG0991 Replication factor C, 96.9 0.0042 9.1E-08 59.0 8.6 46 123-168 27-72 (333)
118 PRK08118 topology modulation p 96.9 0.002 4.3E-08 60.6 6.7 26 145-170 2-27 (167)
119 PRK10865 protein disaggregatio 96.9 0.0032 7E-08 74.9 9.3 89 121-209 176-283 (857)
120 PRK06645 DNA polymerase III su 96.9 0.0048 1E-07 68.3 10.0 112 122-233 20-166 (507)
121 PRK14964 DNA polymerase III su 96.9 0.005 1.1E-07 67.5 10.0 112 122-233 12-154 (491)
122 COG2255 RuvB Holliday junction 96.9 0.011 2.4E-07 58.2 11.1 85 122-209 25-115 (332)
123 KOG4579 Leucine-rich repeat (L 96.8 0.00016 3.5E-09 62.6 -1.3 82 468-549 50-133 (177)
124 COG1474 CDC6 Cdc6-related prot 96.8 0.02 4.4E-07 60.8 14.1 86 124-209 18-135 (366)
125 TIGR02881 spore_V_K stage V sp 96.8 0.0022 4.9E-08 65.4 6.5 27 143-169 41-67 (261)
126 PRK08181 transposase; Validate 96.8 0.0032 6.8E-08 63.8 7.4 31 137-169 101-131 (269)
127 PF13207 AAA_17: AAA domain; P 96.8 0.0011 2.3E-08 58.8 3.6 24 146-169 1-24 (121)
128 PRK14970 DNA polymerase III su 96.8 0.028 6.1E-07 60.6 15.3 114 122-235 16-148 (367)
129 PRK09376 rho transcription ter 96.8 0.0019 4.2E-08 67.5 5.8 27 144-170 169-195 (416)
130 PRK03992 proteasome-activating 96.8 0.0022 4.8E-08 69.3 6.6 88 122-209 130-236 (389)
131 PRK14958 DNA polymerase III su 96.8 0.012 2.6E-07 65.6 12.4 115 121-235 14-159 (509)
132 PRK05642 DNA replication initi 96.8 0.006 1.3E-07 61.0 9.1 89 145-236 46-141 (234)
133 TIGR02397 dnaX_nterm DNA polym 96.8 0.02 4.4E-07 61.5 14.0 114 122-235 13-157 (355)
134 PRK07471 DNA polymerase III su 96.8 0.0075 1.6E-07 64.2 10.2 115 122-236 18-182 (365)
135 COG1373 Predicted ATPase (AAA+ 96.7 0.0041 8.9E-08 67.2 7.9 107 128-236 22-132 (398)
136 smart00382 AAA ATPases associa 96.7 0.0042 9.1E-08 56.5 6.9 68 145-212 3-93 (148)
137 COG5238 RNA1 Ran GTPase-activa 96.7 0.00034 7.4E-09 67.7 -0.5 251 489-757 25-313 (388)
138 PRK07940 DNA polymerase III su 96.7 0.016 3.4E-07 62.4 11.9 115 122-236 4-158 (394)
139 PRK09183 transposase/IS protei 96.7 0.0042 9E-08 63.0 7.2 24 145-168 103-126 (259)
140 cd01128 rho_factor Transcripti 96.7 0.0022 4.8E-08 64.2 5.0 29 142-170 14-42 (249)
141 PRK06526 transposase; Provisio 96.7 0.0051 1.1E-07 62.0 7.6 26 144-169 98-123 (254)
142 PRK14951 DNA polymerase III su 96.7 0.0083 1.8E-07 67.8 10.1 115 121-235 14-164 (618)
143 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0058 1.3E-07 72.6 9.1 90 120-209 184-292 (852)
144 TIGR03346 chaperone_ClpB ATP-d 96.6 0.058 1.3E-06 64.7 17.6 46 123-168 565-619 (852)
145 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0062 1.3E-07 72.8 9.4 89 121-209 171-278 (852)
146 PRK07994 DNA polymerase III su 96.6 0.012 2.7E-07 66.7 11.1 116 121-236 14-160 (647)
147 PRK09112 DNA polymerase III su 96.6 0.02 4.3E-07 60.7 11.9 47 122-168 22-69 (351)
148 PRK07764 DNA polymerase III su 96.6 0.014 3E-07 68.6 11.4 115 122-236 14-161 (824)
149 PF00308 Bac_DnaA: Bacterial d 96.6 0.0024 5.1E-08 63.1 4.5 91 144-236 34-141 (219)
150 CHL00095 clpC Clp protease ATP 96.5 0.083 1.8E-06 63.2 17.9 87 123-209 509-623 (821)
151 KOG2004 Mitochondrial ATP-depe 96.5 0.042 9.2E-07 61.0 13.7 86 124-209 412-517 (906)
152 PRK14954 DNA polymerase III su 96.5 0.032 7E-07 63.4 13.4 48 121-168 14-62 (620)
153 KOG0989 Replication factor C, 96.5 0.0055 1.2E-07 61.0 6.2 114 122-235 35-169 (346)
154 PRK14969 DNA polymerase III su 96.5 0.016 3.4E-07 65.1 10.6 115 122-236 15-160 (527)
155 PRK08116 hypothetical protein; 96.5 0.0023 5E-08 65.2 3.6 86 145-233 115-219 (268)
156 CHL00181 cbbX CbbX; Provisiona 96.4 0.014 3.1E-07 60.1 9.3 24 145-168 60-83 (287)
157 PRK06696 uridine kinase; Valid 96.4 0.0041 9E-08 61.8 5.2 42 127-168 2-46 (223)
158 PRK14952 DNA polymerase III su 96.4 0.037 8E-07 62.4 13.2 114 122-235 12-158 (584)
159 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0042 9.1E-08 64.7 5.3 47 124-170 52-104 (361)
160 TIGR02880 cbbX_cfxQ probable R 96.4 0.033 7.1E-07 57.4 11.7 24 146-169 60-83 (284)
161 TIGR00678 holB DNA polymerase 96.4 0.018 3.8E-07 55.6 9.2 100 134-233 3-134 (188)
162 PRK10865 protein disaggregatio 96.3 0.14 2.9E-06 61.4 18.1 46 123-168 568-622 (857)
163 PRK11034 clpA ATP-dependent Cl 96.3 0.0089 1.9E-07 69.6 7.8 88 121-208 184-289 (758)
164 KOG2123 Uncharacterized conser 96.3 0.00029 6.3E-09 68.4 -3.7 80 494-575 19-99 (388)
165 COG1222 RPT1 ATP-dependent 26S 96.3 0.024 5.3E-07 57.8 9.5 87 122-208 150-255 (406)
166 COG1618 Predicted nucleotide k 96.3 0.0035 7.5E-08 56.2 3.1 26 145-170 6-31 (179)
167 PTZ00454 26S protease regulato 96.3 0.01 2.2E-07 64.0 7.2 86 122-208 144-249 (398)
168 PRK14959 DNA polymerase III su 96.2 0.03 6.4E-07 63.1 11.1 115 122-236 15-160 (624)
169 PF05673 DUF815: Protein of un 96.2 0.022 4.9E-07 55.7 8.8 83 122-209 26-118 (249)
170 PRK08451 DNA polymerase III su 96.2 0.027 5.8E-07 62.6 10.5 115 122-236 13-158 (535)
171 PF04665 Pox_A32: Poxvirus A32 96.2 0.01 2.2E-07 58.5 6.2 27 144-170 13-39 (241)
172 cd02117 NifH_like This family 96.1 0.0059 1.3E-07 60.2 4.4 23 145-167 1-23 (212)
173 TIGR02639 ClpA ATP-dependent C 96.1 0.017 3.6E-07 68.1 8.7 87 123-209 454-565 (731)
174 KOG0729 26S proteasome regulat 96.1 0.037 8.1E-07 53.7 9.4 86 122-207 176-280 (435)
175 PRK13230 nitrogenase reductase 96.1 0.0069 1.5E-07 62.6 4.9 23 145-167 2-24 (279)
176 TIGR01425 SRP54_euk signal rec 96.1 0.068 1.5E-06 57.6 12.5 26 143-168 99-124 (429)
177 KOG0733 Nuclear AAA ATPase (VC 96.1 0.017 3.6E-07 62.8 7.7 87 122-208 189-293 (802)
178 PRK13236 nitrogenase reductase 96.0 0.0084 1.8E-07 62.3 5.1 26 141-166 3-28 (296)
179 PRK06305 DNA polymerase III su 96.0 0.048 1E-06 60.0 11.2 114 121-234 15-160 (451)
180 PRK06647 DNA polymerase III su 96.0 0.074 1.6E-06 60.1 12.8 113 122-234 15-158 (563)
181 TIGR01287 nifH nitrogenase iro 96.0 0.0069 1.5E-07 62.5 4.3 23 145-167 1-23 (275)
182 KOG2739 Leucine-rich acidic nu 96.0 0.0043 9.2E-08 60.5 2.5 81 493-575 42-127 (260)
183 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8E-08 60.9 2.0 61 469-529 63-129 (260)
184 PRK14086 dnaA chromosomal repl 96.0 0.023 5.1E-07 63.6 8.5 25 145-169 315-339 (617)
185 PF01695 IstB_IS21: IstB-like 96.0 0.0029 6.2E-08 60.1 1.2 26 144-169 47-72 (178)
186 PRK06547 hypothetical protein; 95.9 0.01 2.2E-07 55.9 4.9 36 134-169 5-40 (172)
187 COG0542 clpA ATP-binding subun 95.9 0.05 1.1E-06 62.4 11.1 86 123-209 491-605 (786)
188 PLN00020 ribulose bisphosphate 95.9 0.016 3.4E-07 60.1 6.5 66 142-208 146-223 (413)
189 PRK09111 DNA polymerase III su 95.9 0.036 7.8E-07 62.9 10.0 113 121-233 22-170 (598)
190 PRK14088 dnaA chromosomal repl 95.9 0.034 7.3E-07 61.1 9.5 25 145-169 131-155 (440)
191 PRK14950 DNA polymerase III su 95.9 0.096 2.1E-06 60.0 13.5 114 122-235 15-160 (585)
192 PRK07133 DNA polymerase III su 95.9 0.066 1.4E-06 61.4 11.8 114 122-235 17-158 (725)
193 TIGR03345 VI_ClpV1 type VI sec 95.9 0.014 3E-07 69.4 6.5 87 123-209 566-680 (852)
194 PRK14965 DNA polymerase III su 95.8 0.073 1.6E-06 60.6 12.1 113 121-233 14-157 (576)
195 KOG1947 Leucine rich repeat pr 95.8 0.0028 6.1E-08 71.4 0.8 146 639-788 186-339 (482)
196 PRK13235 nifH nitrogenase redu 95.8 0.0095 2.1E-07 61.4 4.5 23 145-167 2-24 (274)
197 PRK13232 nifH nitrogenase redu 95.8 0.0094 2E-07 61.4 4.4 23 145-167 2-24 (273)
198 TIGR00767 rho transcription te 95.8 0.013 2.9E-07 61.8 5.3 26 144-169 168-193 (415)
199 PF00485 PRK: Phosphoribulokin 95.8 0.0084 1.8E-07 58.1 3.7 24 146-169 1-24 (194)
200 COG0541 Ffh Signal recognition 95.8 0.18 4E-06 53.2 13.4 119 54-211 12-143 (451)
201 PRK09270 nucleoside triphospha 95.7 0.014 3.1E-07 58.2 5.3 29 141-169 30-58 (229)
202 TIGR00362 DnaA chromosomal rep 95.7 0.035 7.6E-07 60.7 8.7 25 145-169 137-161 (405)
203 PF13238 AAA_18: AAA domain; P 95.7 0.0083 1.8E-07 53.6 3.2 22 147-168 1-22 (129)
204 PRK07667 uridine kinase; Provi 95.7 0.014 3.1E-07 56.4 5.0 36 133-168 4-41 (193)
205 PRK11034 clpA ATP-dependent Cl 95.7 0.019 4.2E-07 66.9 6.9 86 124-209 459-569 (758)
206 PRK00771 signal recognition pa 95.7 0.1 2.2E-06 56.7 12.0 27 143-169 94-120 (437)
207 KOG0734 AAA+-type ATPase conta 95.7 0.028 6E-07 60.1 7.3 88 122-209 303-408 (752)
208 PF14532 Sigma54_activ_2: Sigm 95.7 0.0074 1.6E-07 54.8 2.7 99 127-234 2-109 (138)
209 TIGR03689 pup_AAA proteasome A 95.7 0.02 4.4E-07 63.1 6.4 48 122-169 181-241 (512)
210 TIGR01281 DPOR_bchL light-inde 95.6 0.013 2.8E-07 60.2 4.6 21 146-166 2-22 (268)
211 TIGR01241 FtsH_fam ATP-depende 95.6 0.021 4.5E-07 64.2 6.4 87 122-208 54-158 (495)
212 PTZ00361 26 proteosome regulat 95.6 0.014 3.1E-07 63.3 4.9 87 122-208 182-287 (438)
213 PRK14971 DNA polymerase III su 95.6 0.086 1.9E-06 60.3 11.2 115 122-236 16-162 (614)
214 PRK05480 uridine/cytidine kina 95.6 0.011 2.5E-07 58.0 3.7 27 142-168 4-30 (209)
215 PRK05563 DNA polymerase III su 95.5 0.16 3.5E-06 57.6 13.3 115 121-235 14-159 (559)
216 cd02019 NK Nucleoside/nucleoti 95.5 0.011 2.3E-07 46.2 2.7 23 146-168 1-23 (69)
217 PRK12422 chromosomal replicati 95.5 0.05 1.1E-06 59.7 8.8 25 145-169 142-166 (445)
218 PRK15455 PrkA family serine pr 95.5 0.019 4.1E-07 63.1 5.3 49 122-170 75-129 (644)
219 PRK14953 DNA polymerase III su 95.5 0.09 1.9E-06 58.4 10.7 112 122-233 15-157 (486)
220 KOG2123 Uncharacterized conser 95.5 0.0013 2.8E-08 64.1 -3.2 97 444-545 18-123 (388)
221 PRK08233 hypothetical protein; 95.4 0.012 2.6E-07 56.4 3.4 25 144-168 3-27 (182)
222 PRK08939 primosomal protein Dn 95.4 0.017 3.6E-07 60.0 4.6 105 127-233 135-259 (306)
223 CHL00176 ftsH cell division pr 95.4 0.037 8E-07 63.3 7.6 88 121-208 181-286 (638)
224 PRK13185 chlL protochlorophyll 95.4 0.019 4.1E-07 59.1 4.8 23 145-167 3-25 (270)
225 PRK14948 DNA polymerase III su 95.4 0.087 1.9E-06 60.3 10.5 114 122-235 15-161 (620)
226 TIGR00602 rad24 checkpoint pro 95.4 0.046 9.9E-07 62.1 8.2 48 122-169 83-135 (637)
227 COG0572 Udk Uridine kinase [Nu 95.4 0.015 3.1E-07 56.0 3.6 28 143-170 7-34 (218)
228 PRK13233 nifH nitrogenase redu 95.4 0.017 3.7E-07 59.6 4.5 22 145-166 3-24 (275)
229 TIGR00235 udk uridine kinase. 95.4 0.015 3.2E-07 57.1 3.7 26 143-168 5-30 (207)
230 PRK13234 nifH nitrogenase redu 95.4 0.021 4.6E-07 59.3 5.1 24 143-166 3-26 (295)
231 KOG2227 Pre-initiation complex 95.3 0.15 3.2E-06 54.2 11.0 51 120-170 147-201 (529)
232 PRK06762 hypothetical protein; 95.3 0.015 3.4E-07 54.7 3.5 25 144-168 2-26 (166)
233 PRK03839 putative kinase; Prov 95.2 0.015 3.2E-07 55.7 3.3 25 146-170 2-26 (180)
234 PTZ00301 uridine kinase; Provi 95.2 0.015 3.3E-07 56.7 3.3 25 144-168 3-27 (210)
235 KOG2543 Origin recognition com 95.2 0.079 1.7E-06 54.6 8.4 47 123-169 6-55 (438)
236 PRK12727 flagellar biosynthesi 95.2 0.13 2.9E-06 56.4 10.7 24 144-167 350-373 (559)
237 PF08433 KTI12: Chromatin asso 95.2 0.036 7.7E-07 56.3 6.0 26 145-170 2-27 (270)
238 KOG3864 Uncharacterized conser 95.2 0.0044 9.6E-08 57.8 -0.5 68 688-760 122-189 (221)
239 PRK00149 dnaA chromosomal repl 95.2 0.062 1.4E-06 59.6 8.4 25 145-169 149-173 (450)
240 PRK12377 putative replication 95.2 0.034 7.3E-07 55.7 5.6 28 143-170 100-127 (248)
241 PF13671 AAA_33: AAA domain; P 95.1 0.019 4E-07 52.5 3.5 24 146-169 1-24 (143)
242 cd02040 NifH NifH gene encodes 95.1 0.025 5.5E-07 58.1 4.9 23 145-167 2-24 (270)
243 KOG0736 Peroxisome assembly fa 95.1 0.05 1.1E-06 60.9 7.1 89 121-209 670-776 (953)
244 PRK04040 adenylate kinase; Pro 95.1 0.02 4.3E-07 54.9 3.6 26 144-169 2-27 (188)
245 TIGR02016 BchX chlorophyllide 95.1 0.026 5.7E-07 58.5 4.7 23 145-167 1-23 (296)
246 TIGR03499 FlhF flagellar biosy 95.0 0.21 4.6E-06 51.4 11.2 25 143-167 193-217 (282)
247 TIGR00763 lon ATP-dependent pr 95.0 0.083 1.8E-06 62.7 9.2 47 124-170 321-373 (775)
248 PRK06995 flhF flagellar biosyn 95.0 0.46 1E-05 52.2 14.1 25 144-168 256-280 (484)
249 PRK14087 dnaA chromosomal repl 95.0 0.11 2.5E-06 57.1 9.6 25 145-169 142-166 (450)
250 PRK14722 flhF flagellar biosyn 95.0 0.17 3.6E-06 53.7 10.3 24 144-167 137-160 (374)
251 COG0542 clpA ATP-binding subun 95.0 0.082 1.8E-06 60.6 8.5 86 121-209 168-274 (786)
252 TIGR01360 aden_kin_iso1 adenyl 94.9 0.021 4.6E-07 55.0 3.4 26 143-168 2-27 (188)
253 PRK00625 shikimate kinase; Pro 94.9 0.02 4.3E-07 54.0 3.1 25 146-170 2-26 (173)
254 PF02374 ArsA_ATPase: Anion-tr 94.9 0.032 6.8E-07 58.0 4.8 23 145-167 2-24 (305)
255 cd02032 Bchl_like This family 94.9 0.031 6.6E-07 57.4 4.7 22 146-167 2-23 (267)
256 COG1084 Predicted GTPase [Gene 94.9 1.8 4E-05 44.1 16.8 27 141-167 165-191 (346)
257 COG1428 Deoxynucleoside kinase 94.9 0.021 4.5E-07 54.1 3.1 27 144-170 4-30 (216)
258 TIGR01243 CDC48 AAA family ATP 94.9 0.046 9.9E-07 64.7 6.7 87 121-208 176-282 (733)
259 COG0563 Adk Adenylate kinase a 94.9 0.025 5.5E-07 53.5 3.6 27 146-172 2-28 (178)
260 COG0593 DnaA ATPase involved i 94.8 0.17 3.7E-06 53.9 9.8 90 144-236 113-219 (408)
261 PF01583 APS_kinase: Adenylyls 94.8 0.031 6.8E-07 51.1 3.8 27 144-170 2-28 (156)
262 PRK12723 flagellar biosynthesi 94.8 0.2 4.4E-06 53.6 10.4 26 143-168 173-198 (388)
263 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.6E-07 34.0 0.7 20 517-536 1-20 (22)
264 PRK10867 signal recognition pa 94.7 0.43 9.3E-06 51.9 13.0 27 142-168 98-124 (433)
265 PF05659 RPW8: Arabidopsis bro 94.7 0.11 2.4E-06 47.1 7.2 103 2-119 3-106 (147)
266 TIGR00554 panK_bact pantothena 94.7 0.035 7.5E-07 56.8 4.4 26 141-166 59-84 (290)
267 TIGR02858 spore_III_AA stage I 94.7 0.08 1.7E-06 53.7 7.0 99 133-234 99-228 (270)
268 PRK05703 flhF flagellar biosyn 94.6 0.2 4.4E-06 54.6 10.3 24 144-167 221-244 (424)
269 PF00142 Fer4_NifH: 4Fe-4S iro 94.6 0.05 1.1E-06 53.7 5.1 32 145-176 1-37 (273)
270 PRK13768 GTPase; Provisional 94.6 0.041 8.8E-07 55.7 4.5 23 145-167 3-25 (253)
271 PF13177 DNA_pol3_delta2: DNA 94.6 0.14 3.1E-06 47.7 7.9 110 127-236 1-143 (162)
272 PRK05541 adenylylsulfate kinas 94.6 0.032 7E-07 53.1 3.6 27 143-169 6-32 (176)
273 PRK11331 5-methylcytosine-spec 94.6 0.044 9.6E-07 58.9 4.9 44 124-169 176-219 (459)
274 cd02024 NRK1 Nicotinamide ribo 94.5 0.025 5.3E-07 53.9 2.6 22 146-167 1-22 (187)
275 cd02025 PanK Pantothenate kina 94.5 0.024 5.3E-07 55.9 2.7 23 146-168 1-23 (220)
276 PRK00131 aroK shikimate kinase 94.5 0.032 6.9E-07 53.0 3.5 27 144-170 4-30 (175)
277 COG4088 Predicted nucleotide k 94.5 0.055 1.2E-06 50.8 4.6 26 145-170 2-27 (261)
278 PRK10751 molybdopterin-guanine 94.5 0.038 8.3E-07 51.6 3.7 27 143-169 5-31 (173)
279 COG3640 CooC CO dehydrogenase 94.5 0.056 1.2E-06 52.0 4.8 21 146-166 2-22 (255)
280 PF03205 MobB: Molybdopterin g 94.4 0.04 8.7E-07 49.9 3.7 25 145-169 1-25 (140)
281 CHL00195 ycf46 Ycf46; Provisio 94.4 0.1 2.2E-06 57.8 7.5 85 123-208 228-329 (489)
282 cd02023 UMPK Uridine monophosp 94.4 0.026 5.6E-07 54.9 2.6 22 146-167 1-22 (198)
283 PF00910 RNA_helicase: RNA hel 94.4 0.028 6.2E-07 48.3 2.6 24 147-170 1-24 (107)
284 CHL00072 chlL photochlorophyll 94.4 0.047 1E-06 56.5 4.5 21 147-167 3-23 (290)
285 PRK06217 hypothetical protein; 94.4 0.03 6.4E-07 53.7 2.9 25 145-169 2-26 (183)
286 cd01133 F1-ATPase_beta F1 ATP 94.4 0.12 2.5E-06 52.2 7.1 27 143-169 68-94 (274)
287 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.029 6.2E-07 53.8 2.6 24 146-169 1-24 (183)
288 PRK11889 flhF flagellar biosyn 94.3 0.095 2.1E-06 55.3 6.5 25 143-167 240-264 (436)
289 COG0003 ArsA Predicted ATPase 94.3 0.054 1.2E-06 56.2 4.7 23 144-166 2-24 (322)
290 TIGR02322 phosphon_PhnN phosph 94.3 0.035 7.6E-07 53.0 3.1 24 145-168 2-25 (179)
291 PRK10536 hypothetical protein; 94.2 0.068 1.5E-06 53.0 5.1 46 120-167 52-97 (262)
292 PRK14974 cell division protein 94.2 0.36 7.9E-06 50.6 10.7 27 142-168 138-164 (336)
293 COG1936 Predicted nucleotide k 94.2 0.033 7.2E-07 50.9 2.6 20 146-165 2-21 (180)
294 KOG0739 AAA+-type ATPase [Post 94.2 0.16 3.4E-06 50.5 7.4 87 121-208 131-236 (439)
295 PF00448 SRP54: SRP54-type pro 94.2 0.047 1E-06 52.7 3.9 25 144-168 1-25 (196)
296 TIGR02030 BchI-ChlI magnesium 94.2 0.068 1.5E-06 56.1 5.3 48 121-168 2-49 (337)
297 PRK00889 adenylylsulfate kinas 94.2 0.048 1E-06 51.8 3.9 26 143-168 3-28 (175)
298 PRK13947 shikimate kinase; Pro 94.1 0.038 8.2E-07 52.3 3.0 25 146-170 3-27 (171)
299 TIGR00064 ftsY signal recognit 94.1 0.077 1.7E-06 54.1 5.4 26 142-167 70-95 (272)
300 COG2607 Predicted ATPase (AAA+ 94.1 0.32 7E-06 47.0 9.0 110 125-236 62-184 (287)
301 PRK13949 shikimate kinase; Pro 94.1 0.038 8.2E-07 52.0 2.9 26 145-170 2-27 (169)
302 cd02028 UMPK_like Uridine mono 94.1 0.038 8.2E-07 52.6 2.9 23 146-168 1-23 (179)
303 PRK10733 hflB ATP-dependent me 94.1 0.2 4.3E-06 58.0 9.3 65 145-209 186-256 (644)
304 COG1348 NifH Nitrogenase subun 94.1 0.058 1.2E-06 51.6 4.0 34 145-178 2-40 (278)
305 TIGR00073 hypB hydrogenase acc 94.1 0.05 1.1E-06 53.3 3.9 30 138-167 16-45 (207)
306 cd02020 CMPK Cytidine monophos 94.1 0.037 8E-07 50.8 2.7 24 146-169 1-24 (147)
307 PF07726 AAA_3: ATPase family 94.0 0.035 7.6E-07 48.5 2.2 24 147-170 2-25 (131)
308 COG1223 Predicted ATPase (AAA+ 94.0 0.13 2.9E-06 50.0 6.3 88 121-208 119-221 (368)
309 KOG0735 AAA+-type ATPase [Post 94.0 0.081 1.8E-06 58.8 5.3 63 145-208 432-505 (952)
310 TIGR01243 CDC48 AAA family ATP 93.9 0.15 3.2E-06 60.4 8.1 86 122-208 452-557 (733)
311 cd02021 GntK Gluconate kinase 93.9 0.04 8.6E-07 50.9 2.7 23 146-168 1-23 (150)
312 COG1484 DnaC DNA replication p 93.9 0.089 1.9E-06 53.1 5.3 28 143-170 104-131 (254)
313 PRK07952 DNA replication prote 93.9 0.094 2E-06 52.3 5.4 26 144-169 99-124 (244)
314 KOG1969 DNA replication checkp 93.9 0.074 1.6E-06 59.3 4.9 65 144-209 326-399 (877)
315 PRK10787 DNA-binding ATP-depen 93.8 0.42 9.1E-06 56.4 11.4 47 124-170 323-375 (784)
316 PRK05707 DNA polymerase III su 93.8 0.35 7.6E-06 50.8 9.8 91 145-236 23-147 (328)
317 PF00560 LRR_1: Leucine Rich R 93.8 0.023 5E-07 32.8 0.5 21 472-492 1-21 (22)
318 PRK03846 adenylylsulfate kinas 93.8 0.064 1.4E-06 52.1 3.9 27 142-168 22-48 (198)
319 cd00561 CobA_CobO_BtuR ATP:cor 93.7 0.14 3.1E-06 47.0 5.9 91 145-235 3-138 (159)
320 TIGR03263 guanyl_kin guanylate 93.7 0.047 1E-06 52.2 2.8 24 145-168 2-25 (180)
321 cd00464 SK Shikimate kinase (S 93.7 0.052 1.1E-06 50.3 3.1 23 147-169 2-24 (154)
322 PF03266 NTPase_1: NTPase; In 93.7 0.054 1.2E-06 50.8 3.2 23 147-169 2-24 (168)
323 KOG0731 AAA+-type ATPase conta 93.7 0.13 2.9E-06 58.5 6.7 89 121-209 309-415 (774)
324 PRK10416 signal recognition pa 93.7 0.098 2.1E-06 54.6 5.4 26 143-168 113-138 (318)
325 TIGR00176 mobB molybdopterin-g 93.7 0.052 1.1E-06 50.2 2.9 25 146-170 1-25 (155)
326 COG3854 SpoIIIAA ncharacterize 93.7 0.17 3.6E-06 48.5 6.2 96 135-233 128-251 (308)
327 PRK14530 adenylate kinase; Pro 93.7 0.054 1.2E-06 53.5 3.2 24 146-169 5-28 (215)
328 cd00227 CPT Chloramphenicol (C 93.6 0.055 1.2E-06 51.4 3.1 24 145-168 3-26 (175)
329 CHL00081 chlI Mg-protoporyphyr 93.6 0.082 1.8E-06 55.5 4.6 50 120-169 14-63 (350)
330 KOG0733 Nuclear AAA ATPase (VC 93.6 0.13 2.8E-06 56.3 6.1 66 142-208 543-615 (802)
331 PRK05057 aroK shikimate kinase 93.6 0.061 1.3E-06 50.8 3.4 26 144-169 4-29 (172)
332 PF07728 AAA_5: AAA domain (dy 93.6 0.064 1.4E-06 48.7 3.4 24 147-170 2-25 (139)
333 PRK13231 nitrogenase reductase 93.6 0.072 1.6E-06 54.5 4.1 24 145-168 3-26 (264)
334 TIGR00150 HI0065_YjeE ATPase, 93.5 0.12 2.6E-06 45.9 4.8 25 144-168 22-46 (133)
335 PRK13975 thymidylate kinase; P 93.5 0.063 1.4E-06 52.1 3.4 26 145-170 3-28 (196)
336 KOG1532 GTPase XAB1, interacts 93.5 0.064 1.4E-06 52.5 3.2 28 143-170 18-45 (366)
337 PRK10463 hydrogenase nickel in 93.4 0.11 2.4E-06 52.8 5.0 36 134-169 94-129 (290)
338 cd01131 PilT Pilus retraction 93.4 0.13 2.9E-06 49.8 5.5 85 145-233 2-107 (198)
339 COG1102 Cmk Cytidylate kinase 93.4 0.062 1.4E-06 48.5 2.8 24 146-169 2-25 (179)
340 PRK13531 regulatory ATPase Rav 93.4 0.095 2E-06 57.0 4.7 46 122-169 19-64 (498)
341 PRK00300 gmk guanylate kinase; 93.4 0.06 1.3E-06 52.7 3.0 26 144-169 5-30 (205)
342 PRK12339 2-phosphoglycerate ki 93.4 0.073 1.6E-06 51.3 3.5 25 144-168 3-27 (197)
343 PF03308 ArgK: ArgK protein; 93.4 0.13 2.7E-06 50.9 5.1 39 131-169 14-54 (266)
344 PF12775 AAA_7: P-loop contain 93.3 0.13 2.8E-06 52.5 5.4 36 133-169 23-58 (272)
345 COG2019 AdkA Archaeal adenylat 93.3 0.068 1.5E-06 48.5 2.9 25 144-168 4-28 (189)
346 KOG0727 26S proteasome regulat 93.3 1.3 2.9E-05 43.0 11.6 87 122-208 154-259 (408)
347 PRK10078 ribose 1,5-bisphospho 93.3 0.061 1.3E-06 51.7 2.9 24 145-168 3-26 (186)
348 cd00071 GMPK Guanosine monopho 93.3 0.058 1.2E-06 48.8 2.5 23 146-168 1-23 (137)
349 PRK08903 DnaA regulatory inact 93.3 0.11 2.5E-06 51.7 4.8 36 133-168 30-66 (227)
350 PF06309 Torsin: Torsin; Inte 93.2 0.19 4.1E-06 43.8 5.3 43 125-167 27-76 (127)
351 PRK05439 pantothenate kinase; 93.1 0.13 2.7E-06 53.2 5.0 26 142-167 84-109 (311)
352 PRK13946 shikimate kinase; Pro 93.1 0.07 1.5E-06 51.2 3.0 26 145-170 11-36 (184)
353 KOG0651 26S proteasome regulat 93.1 0.13 2.8E-06 51.5 4.8 66 143-208 165-236 (388)
354 cd02027 APSK Adenosine 5'-phos 93.1 0.07 1.5E-06 49.1 2.8 23 146-168 1-23 (149)
355 PRK08058 DNA polymerase III su 93.1 0.3 6.5E-06 51.6 7.9 112 125-236 7-151 (329)
356 PHA02774 E1; Provisional 93.1 0.14 3E-06 56.6 5.4 140 132-290 421-583 (613)
357 PRK12608 transcription termina 93.1 0.22 4.7E-06 52.5 6.6 36 133-168 121-157 (380)
358 COG0470 HolB ATPase involved i 93.1 0.35 7.6E-06 51.2 8.6 112 125-236 3-150 (325)
359 PRK05537 bifunctional sulfate 93.1 0.17 3.7E-06 57.3 6.4 49 121-169 367-417 (568)
360 PF13521 AAA_28: AAA domain; P 93.1 0.076 1.6E-06 49.8 3.1 21 147-167 2-22 (163)
361 cd00820 PEPCK_HprK Phosphoenol 93.0 0.084 1.8E-06 44.8 2.9 22 144-165 15-36 (107)
362 PRK14527 adenylate kinase; Pro 93.0 0.09 1.9E-06 50.8 3.6 28 142-169 4-31 (191)
363 PF08477 Miro: Miro-like prote 93.0 0.08 1.7E-06 46.5 3.0 21 147-167 2-22 (119)
364 PF05621 TniB: Bacterial TniB 93.0 0.65 1.4E-05 47.2 9.7 41 129-169 43-86 (302)
365 PRK12726 flagellar biosynthesi 93.0 0.67 1.4E-05 48.9 10.0 25 143-167 205-229 (407)
366 PRK13948 shikimate kinase; Pro 93.0 0.094 2E-06 49.9 3.5 28 143-170 9-36 (182)
367 TIGR01313 therm_gnt_kin carboh 93.0 0.064 1.4E-06 50.3 2.4 22 147-168 1-22 (163)
368 COG1763 MobB Molybdopterin-gua 93.0 0.091 2E-06 48.4 3.3 27 144-170 2-28 (161)
369 cd01983 Fer4_NifH The Fer4_Nif 92.9 0.084 1.8E-06 44.2 2.9 23 146-168 1-23 (99)
370 KOG3864 Uncharacterized conser 92.9 0.011 2.5E-07 55.2 -2.7 69 716-786 121-189 (221)
371 PRK13705 plasmid-partitioning 92.9 0.21 4.6E-06 53.9 6.5 26 142-167 104-130 (388)
372 KOG0726 26S proteasome regulat 92.9 0.27 5.8E-06 48.7 6.4 86 122-207 184-288 (440)
373 PRK04220 2-phosphoglycerate ki 92.9 0.21 4.7E-06 51.0 6.1 34 135-168 82-116 (301)
374 PF03193 DUF258: Protein of un 92.8 0.14 3.1E-06 47.1 4.4 35 130-167 24-58 (161)
375 PRK14721 flhF flagellar biosyn 92.8 1.1 2.3E-05 48.5 11.6 25 143-167 190-214 (420)
376 PF13306 LRR_5: Leucine rich r 92.8 0.35 7.6E-06 43.0 6.9 103 464-572 5-111 (129)
377 PRK04182 cytidylate kinase; Pr 92.8 0.086 1.9E-06 50.3 3.1 24 146-169 2-25 (180)
378 PRK05342 clpX ATP-dependent pr 92.8 0.28 6.1E-06 53.1 7.3 26 145-170 109-134 (412)
379 PF13306 LRR_5: Leucine rich r 92.8 0.39 8.6E-06 42.7 7.2 115 443-566 10-128 (129)
380 PF13504 LRR_7: Leucine rich r 92.8 0.073 1.6E-06 28.5 1.4 16 517-532 2-17 (17)
381 COG0237 CoaE Dephospho-CoA kin 92.7 0.097 2.1E-06 50.5 3.2 23 144-166 2-24 (201)
382 COG1124 DppF ABC-type dipeptid 92.7 0.091 2E-06 51.0 2.9 24 144-167 33-56 (252)
383 PLN02200 adenylate kinase fami 92.7 0.11 2.3E-06 51.9 3.6 26 143-168 42-67 (234)
384 COG0464 SpoVK ATPases of the A 92.6 0.29 6.3E-06 55.2 7.5 66 143-209 275-347 (494)
385 cd02042 ParA ParA and ParB of 92.6 0.16 3.4E-06 43.4 4.2 22 146-167 1-23 (104)
386 cd03116 MobB Molybdenum is an 92.6 0.12 2.6E-06 47.9 3.6 26 145-170 2-27 (159)
387 COG0465 HflB ATP-dependent Zn 92.6 0.21 4.6E-06 55.7 6.0 90 120-209 147-254 (596)
388 PRK04296 thymidine kinase; Pro 92.6 0.24 5.2E-06 47.7 5.8 104 145-252 3-134 (190)
389 KOG0066 eIF2-interacting prote 92.5 0.28 6.1E-06 51.3 6.4 22 145-166 614-635 (807)
390 PF00005 ABC_tran: ABC transpo 92.5 0.095 2E-06 47.4 2.8 25 145-169 12-36 (137)
391 PRK14493 putative bifunctional 92.5 0.11 2.4E-06 52.9 3.5 26 145-170 2-27 (274)
392 COG0529 CysC Adenylylsulfate k 92.5 0.34 7.3E-06 44.6 6.2 30 141-170 20-49 (197)
393 PF01926 MMR_HSR1: 50S ribosom 92.5 0.1 2.3E-06 45.5 3.0 21 147-167 2-22 (116)
394 PRK03731 aroL shikimate kinase 92.5 0.1 2.2E-06 49.3 3.1 26 145-170 3-28 (171)
395 TIGR02173 cyt_kin_arch cytidyl 92.5 0.1 2.2E-06 49.3 3.1 23 146-168 2-24 (171)
396 PF06564 YhjQ: YhjQ protein; 92.4 0.17 3.8E-06 50.0 4.7 24 145-168 2-26 (243)
397 PRK09825 idnK D-gluconate kina 92.4 0.11 2.3E-06 49.3 3.1 25 145-169 4-28 (176)
398 KOG3347 Predicted nucleotide k 92.4 0.097 2.1E-06 46.4 2.5 24 145-168 8-31 (176)
399 PRK13695 putative NTPase; Prov 92.4 0.11 2.3E-06 49.3 3.1 24 146-169 2-25 (174)
400 COG0194 Gmk Guanylate kinase [ 92.4 0.12 2.7E-06 48.1 3.2 24 145-168 5-28 (191)
401 PLN02348 phosphoribulokinase 92.3 0.13 2.9E-06 54.3 3.9 28 141-168 46-73 (395)
402 PRK14723 flhF flagellar biosyn 92.3 1.1 2.3E-05 52.1 11.3 25 144-168 185-209 (767)
403 PRK14737 gmk guanylate kinase; 92.3 0.12 2.7E-06 49.4 3.3 26 143-168 3-28 (186)
404 PTZ00088 adenylate kinase 1; P 92.2 0.11 2.4E-06 51.4 3.0 25 146-170 8-32 (229)
405 KOG0730 AAA+-type ATPase [Post 92.2 0.29 6.4E-06 54.2 6.4 87 121-208 432-538 (693)
406 COG0703 AroK Shikimate kinase 92.2 0.11 2.5E-06 48.0 2.9 26 145-170 3-28 (172)
407 PF03029 ATP_bind_1: Conserved 92.2 0.099 2.1E-06 52.2 2.7 21 149-169 1-21 (238)
408 KOG0741 AAA+-type ATPase [Post 92.2 0.5 1.1E-05 50.9 7.9 73 143-216 537-617 (744)
409 KOG0744 AAA+-type ATPase [Post 92.2 0.25 5.5E-06 49.8 5.4 63 145-207 178-260 (423)
410 TIGR03574 selen_PSTK L-seryl-t 92.2 0.11 2.4E-06 52.6 3.1 24 146-169 1-24 (249)
411 TIGR03371 cellulose_yhjQ cellu 92.2 0.18 4E-06 50.9 4.7 24 145-168 2-26 (246)
412 PRK15453 phosphoribulokinase; 92.1 0.15 3.2E-06 51.4 3.8 26 143-168 4-29 (290)
413 PRK13407 bchI magnesium chelat 92.1 0.17 3.7E-06 53.1 4.4 47 122-168 7-53 (334)
414 PRK10037 cell division protein 92.1 0.17 3.7E-06 51.2 4.4 23 145-167 2-25 (250)
415 cd02034 CooC The accessory pro 92.1 0.14 3E-06 44.6 3.2 22 147-168 2-23 (116)
416 PRK06761 hypothetical protein; 92.1 0.12 2.6E-06 52.6 3.1 26 145-170 4-29 (282)
417 PRK08099 bifunctional DNA-bind 92.1 0.12 2.5E-06 55.9 3.2 28 141-168 216-243 (399)
418 PRK06871 DNA polymerase III su 92.1 2.4 5.2E-05 44.4 12.7 105 132-236 11-148 (325)
419 cd02022 DPCK Dephospho-coenzym 92.1 0.1 2.3E-06 49.7 2.6 21 146-166 1-21 (179)
420 PF00158 Sigma54_activat: Sigm 92.0 0.2 4.4E-06 46.9 4.5 44 125-169 1-47 (168)
421 TIGR00750 lao LAO/AO transport 92.0 0.22 4.7E-06 51.9 5.1 37 132-168 20-58 (300)
422 PRK14738 gmk guanylate kinase; 92.0 0.14 3E-06 50.1 3.4 26 142-167 11-36 (206)
423 TIGR00959 ffh signal recogniti 92.0 1.2 2.6E-05 48.5 10.8 25 143-167 98-122 (428)
424 PRK09435 membrane ATPase/prote 92.0 0.25 5.5E-06 51.6 5.5 38 132-169 42-81 (332)
425 cd03114 ArgK-like The function 92.0 0.13 2.7E-06 47.3 2.9 22 146-167 1-22 (148)
426 cd04139 RalA_RalB RalA/RalB su 92.0 0.11 2.5E-06 48.4 2.7 22 146-167 2-23 (164)
427 cd01672 TMPK Thymidine monopho 91.9 0.14 3E-06 49.8 3.4 24 146-169 2-25 (200)
428 COG1100 GTPase SAR1 and relate 91.9 0.11 2.3E-06 51.5 2.6 24 145-168 6-29 (219)
429 cd01428 ADK Adenylate kinase ( 91.8 0.13 2.7E-06 49.9 2.9 22 147-168 2-23 (194)
430 PLN02796 D-glycerate 3-kinase 91.8 0.16 3.5E-06 52.8 3.7 27 143-169 99-125 (347)
431 TIGR02902 spore_lonB ATP-depen 91.7 0.19 4.1E-06 56.8 4.5 46 122-167 64-109 (531)
432 cd03115 SRP The signal recogni 91.7 0.16 3.4E-06 48.1 3.4 23 146-168 2-24 (173)
433 TIGR01069 mutS2 MutS2 family p 91.7 0.61 1.3E-05 55.0 8.8 144 143-289 321-522 (771)
434 PRK05416 glmZ(sRNA)-inactivati 91.7 0.4 8.7E-06 49.2 6.5 23 143-165 5-27 (288)
435 PRK14532 adenylate kinase; Pro 91.7 0.13 2.8E-06 49.5 2.8 23 147-169 3-25 (188)
436 PRK05022 anaerobic nitric oxid 91.6 0.57 1.2E-05 52.9 8.3 49 121-169 185-235 (509)
437 cd01878 HflX HflX subfamily. 91.6 0.17 3.7E-06 49.4 3.7 26 142-167 39-64 (204)
438 PRK08769 DNA polymerase III su 91.6 1 2.2E-05 47.0 9.4 106 131-236 12-154 (319)
439 PLN02318 phosphoribulokinase/u 91.6 0.16 3.5E-06 56.4 3.6 27 141-167 62-88 (656)
440 CHL00175 minD septum-site dete 91.5 0.25 5.4E-06 51.0 4.9 24 144-167 15-39 (281)
441 COG1126 GlnQ ABC-type polar am 91.5 0.15 3.3E-06 48.6 2.8 23 144-166 28-50 (240)
442 COG1703 ArgK Putative periplas 91.4 0.25 5.4E-06 49.6 4.4 37 133-169 38-76 (323)
443 PRK14531 adenylate kinase; Pro 91.4 0.17 3.6E-06 48.5 3.3 25 145-169 3-27 (183)
444 PRK08356 hypothetical protein; 91.4 0.17 3.8E-06 49.0 3.4 22 144-165 5-26 (195)
445 KOG2702 Predicted panthothenat 91.4 0.33 7.2E-06 46.4 5.0 59 109-167 84-142 (323)
446 PF10662 PduV-EutP: Ethanolami 91.4 0.16 3.4E-06 45.7 2.7 24 145-168 2-25 (143)
447 cd02033 BchX Chlorophyllide re 91.4 0.3 6.5E-06 51.1 5.2 26 142-167 29-54 (329)
448 cd03225 ABC_cobalt_CbiO_domain 91.3 0.15 3.3E-06 50.1 3.0 25 144-168 27-51 (211)
449 TIGR00450 mnmE_trmE_thdF tRNA 91.3 0.68 1.5E-05 50.9 8.2 23 145-167 204-226 (442)
450 cd02029 PRK_like Phosphoribulo 91.3 0.16 3.4E-06 50.8 2.9 23 146-168 1-23 (277)
451 PF13614 AAA_31: AAA domain; P 91.3 0.34 7.4E-06 44.9 5.2 25 145-169 1-26 (157)
452 TIGR03018 pepcterm_TyrKin exop 91.3 0.58 1.3E-05 45.8 7.0 26 142-167 33-59 (207)
453 cd02036 MinD Bacterial cell di 91.3 0.25 5.4E-06 47.0 4.3 22 147-168 2-24 (179)
454 cd03229 ABC_Class3 This class 91.3 0.16 3.5E-06 48.4 3.0 25 144-168 26-50 (178)
455 PRK08927 fliI flagellum-specif 91.3 0.42 9.2E-06 51.7 6.4 27 143-169 157-183 (442)
456 PF00006 ATP-synt_ab: ATP synt 91.3 0.63 1.4E-05 45.5 7.1 26 145-170 16-41 (215)
457 KOG1514 Origin recognition com 91.2 3.1 6.7E-05 46.9 12.9 48 122-169 395-447 (767)
458 TIGR00017 cmk cytidylate kinas 91.2 0.18 3.9E-06 49.6 3.3 25 145-169 3-27 (217)
459 KOG0652 26S proteasome regulat 91.2 0.84 1.8E-05 44.5 7.6 86 121-207 169-274 (424)
460 cd03222 ABC_RNaseL_inhibitor T 91.1 0.18 3.8E-06 47.8 3.0 26 144-169 25-50 (177)
461 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.1 0.16 3.5E-06 50.2 3.0 25 144-168 30-54 (218)
462 PRK08154 anaerobic benzoate ca 91.1 0.27 5.9E-06 51.4 4.7 27 143-169 132-158 (309)
463 PHA02518 ParA-like protein; Pr 91.1 0.29 6.3E-06 48.1 4.7 22 146-167 2-24 (211)
464 TIGR01166 cbiO cobalt transpor 91.1 0.16 3.6E-06 48.9 2.9 24 145-168 19-42 (190)
465 TIGR00041 DTMP_kinase thymidyl 91.1 0.21 4.5E-06 48.4 3.6 25 145-169 4-28 (195)
466 PRK02496 adk adenylate kinase; 91.0 0.21 4.5E-06 47.9 3.5 23 146-168 3-25 (184)
467 PF00406 ADK: Adenylate kinase 91.0 0.18 3.8E-06 46.6 2.9 22 149-170 1-22 (151)
468 cd01862 Rab7 Rab7 subfamily. 91.0 0.16 3.4E-06 48.0 2.6 22 146-167 2-23 (172)
469 PLN02165 adenylate isopentenyl 91.0 0.18 3.9E-06 52.2 3.2 30 140-169 39-68 (334)
470 cd03238 ABC_UvrA The excision 91.0 0.17 3.7E-06 47.9 2.8 22 144-165 21-42 (176)
471 PRK12338 hypothetical protein; 90.9 0.21 4.5E-06 51.6 3.5 25 144-168 4-28 (319)
472 PRK01184 hypothetical protein; 90.9 0.17 3.8E-06 48.4 2.8 19 145-163 2-20 (184)
473 TIGR01663 PNK-3'Pase polynucle 90.9 0.49 1.1E-05 52.8 6.6 66 141-209 366-431 (526)
474 PRK14528 adenylate kinase; Pro 90.9 0.21 4.5E-06 48.0 3.3 24 145-168 2-25 (186)
475 cd04119 RJL RJL (RabJ-Like) su 90.9 0.17 3.7E-06 47.4 2.7 22 146-167 2-23 (168)
476 COG1120 FepC ABC-type cobalami 90.8 0.18 3.8E-06 50.3 2.8 26 144-169 28-53 (258)
477 TIGR00960 3a0501s02 Type II (G 90.8 0.18 3.9E-06 49.8 2.9 25 144-168 29-53 (216)
478 cd03297 ABC_ModC_molybdenum_tr 90.8 0.2 4.2E-06 49.5 3.2 26 142-168 22-47 (214)
479 PRK08972 fliI flagellum-specif 90.8 0.42 9E-06 51.6 5.8 25 144-168 162-186 (444)
480 PRK00279 adk adenylate kinase; 90.8 0.2 4.4E-06 49.4 3.2 25 146-170 2-26 (215)
481 TIGR01351 adk adenylate kinase 90.8 0.18 4E-06 49.5 2.9 23 147-169 2-24 (210)
482 TIGR00455 apsK adenylylsulfate 90.7 0.25 5.5E-06 47.3 3.8 27 142-168 16-42 (184)
483 smart00173 RAS Ras subfamily o 90.7 0.19 4.1E-06 47.0 2.8 22 146-167 2-23 (164)
484 cd04163 Era Era subfamily. Er 90.7 0.2 4.3E-06 46.7 3.0 24 144-167 3-26 (168)
485 PRK00698 tmk thymidylate kinas 90.6 0.23 5.1E-06 48.5 3.6 24 145-168 4-27 (205)
486 TIGR00390 hslU ATP-dependent p 90.6 0.31 6.8E-06 52.0 4.5 27 144-170 47-73 (441)
487 cd01135 V_A-ATPase_B V/A-type 90.6 0.42 9.1E-06 48.1 5.3 27 143-169 68-94 (276)
488 PHA02530 pseT polynucleotide k 90.6 0.2 4.4E-06 52.3 3.3 24 145-168 3-26 (300)
489 cd02026 PRK Phosphoribulokinas 90.6 0.17 3.7E-06 51.7 2.6 23 146-168 1-23 (273)
490 PF13604 AAA_30: AAA domain; P 90.6 0.35 7.6E-06 46.8 4.6 29 142-170 16-44 (196)
491 cd03259 ABC_Carb_Solutes_like 90.5 0.2 4.3E-06 49.4 3.0 24 144-167 26-49 (213)
492 TIGR02012 tigrfam_recA protein 90.5 0.59 1.3E-05 48.6 6.5 25 144-168 55-79 (321)
493 PRK14490 putative bifunctional 90.5 0.22 4.8E-06 53.6 3.5 27 144-170 5-31 (369)
494 cd03293 ABC_NrtD_SsuB_transpor 90.5 0.2 4.3E-06 49.7 2.9 24 145-168 31-54 (220)
495 KOG2170 ATPase of the AAA+ sup 90.5 0.95 2.1E-05 45.5 7.4 85 125-209 84-190 (344)
496 PHA02575 1 deoxynucleoside mon 90.5 0.2 4.4E-06 48.5 2.8 22 146-167 2-23 (227)
497 cd01120 RecA-like_NTPases RecA 90.5 0.19 4.2E-06 46.8 2.7 23 146-168 1-23 (165)
498 cd03261 ABC_Org_Solvent_Resist 90.4 0.2 4.4E-06 50.2 2.9 24 145-168 27-50 (235)
499 PRK08149 ATP synthase SpaL; Va 90.4 0.49 1.1E-05 51.2 5.9 26 144-169 151-176 (428)
500 PRK14494 putative molybdopteri 90.4 0.27 5.8E-06 48.4 3.6 26 145-170 2-27 (229)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-76 Score=675.07 Aligned_cols=515 Identities=28% Similarity=0.455 Sum_probs=416.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 043214 30 YKSNFENLKNEIGKLRVARESVLHRVDDAKRNGEDIEQKVEKWLSDVDKIMDAAGQIIEDEERA---------------- 93 (793)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~---------------- 93 (793)
....+.+..+.+..|++.+..++++++|++.+. .....+..|.+.+++++|+++|.++.+...
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~ 97 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAKR-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVE 97 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHH
Confidence 455666778899999999999999999999884 446888999999999999999998865311
Q ss_pred hccccccCcC-CCcchhhhhhHhhhhh----------------cC------------cccc--cccHHHHHHHHHHhCCC
Q 043214 94 KNSRCFRGLC-PNLTTCYQFSKKAAKE----------------WC------------YEAF--ESRMSTLNDVLNALNNP 142 (793)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~i~~~----------------~~------------~~~~--~gr~~~~~~l~~~l~~~ 142 (793)
.++-|+.+.+ ..+..-+++++++..+ +. .... +|.++.++++.+.|.++
T Consensus 98 ~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d 177 (889)
T KOG4658|consen 98 RQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMED 177 (889)
T ss_pred HHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccC
Confidence 1123333333 2333334444443332 00 0111 89999999999999988
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh-h---ce-----------------------ecc---ccccCChHHHHHHHHHH
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK-K---IS-----------------------FLM---RSCLQSESRRARRLCER 192 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~---fq-----------------------~~~---~~~~~~~~~~~~~l~~~ 192 (793)
+.+++||+||||+||||||+.+||+.. . |+ ++. .+......+.+..+.+.
T Consensus 178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 889999999999999999999999887 3 41 111 12222235677788888
Q ss_pred HhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecCCC-----------------------------CCCC-CC
Q 043214 193 LKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARNPD-----------------------------ISGD-YA 242 (793)
Q Consensus 193 l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~-----------------------------~~~~-~~ 242 (793)
|.+ |||+|||||||+..+|+.++.|+|...+||||++|||++. ++.. ..
T Consensus 258 L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~ 336 (889)
T KOG4658|consen 258 LEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG 336 (889)
T ss_pred hcc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence 886 9999999999999999999999999999999999999998 1111 23
Q ss_pred CChhhHHHHHHHHHHhCCCchHHHHHHHHHccC-ChHHHHHHHHHHcCCCCCCCCCCchhhhhhHHHHhhcCCchhhHHH
Q 043214 243 ENEDLQSIAKDVAKACGCLPIAIVTIARALRNK-SVFEWKNALQELRRPSGRSFTGVPAEAYSTIELSYNHLEGEELKST 321 (793)
Q Consensus 243 ~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~c 321 (793)
.++.++++|++|+++|+|+|||+.++|+.|+.| +..+|+++.+.+......+.++..+.+.+++++||+.||.+ +|.|
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~C 415 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSC 415 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHH
Confidence 345589999999999999999999999999987 77899999999988755555666889999999999999966 9999
Q ss_pred HHHhccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHccccccCC---CCcceehhHHHHHHHHHHH
Q 043214 322 FLLCSLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKTSCLLLDGH---TSEEFSMHDVVRDVAISIA 398 (793)
Q Consensus 322 fl~~s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~~sll~~~~---~~~~~~mhdlv~~l~~~~~ 398 (793)
|+|||+||+||.|+++.|+.+||||||+++.+..+.+.+.+.+|+.+|+.+++++... ...+|+|||++|++|.+++
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ia 495 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIA 495 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHh
Confidence 9999999999999999999999999999876656677788888999999999998764 4589999999999999999
Q ss_pred h-----cccceEEecCCCCCccccchhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcc
Q 043214 399 F-----RDQGVFSMNDGVFPRGLSDKEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTEL 473 (793)
Q Consensus 399 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 473 (793)
. +++. .+..+......+....+..+|++++.++.+..++....+++|++|.+.++......++..+|..++.|
T Consensus 496 s~~~~~~e~~--iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~L 573 (889)
T KOG4658|consen 496 SDFGKQEENQ--IVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLL 573 (889)
T ss_pred ccccccccce--EEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcce
Confidence 9 6652 23322222223555667889999999999999999999999999999988632228888999999999
Q ss_pred eEEEecCC-cCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEEecCC-CCcccChhcccCCCCCEEecCCC
Q 043214 474 RVLDFVAM-HLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGS-NIEEFPREIGQLTRLRLLNLAYC 549 (793)
Q Consensus 474 r~L~l~~~-~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~ 549 (793)
|+|||++| .+..+|..|+.|.|||||+++++.+.. |.++++|+.|.+||+..+ .+..+|.....|++|++|.+...
T Consensus 574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred EEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999987 567999999999999999999999888 888999999999999887 45555555566888998888664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-63 Score=603.07 Aligned_cols=646 Identities=17% Similarity=0.251 Sum_probs=465.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCCCcchhhhhhHhhhhh------cCcccccccHHHHHHHHHHh
Q 043214 66 EQKVEKWLSDVDKIMDAAGQIIEDEERAKNSRCFRGLCPNLTTCYQFSKKAAKE------WCYEAFESRMSTLNDVLNAL 139 (793)
Q Consensus 66 ~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~gr~~~~~~l~~~l 139 (793)
.+.++.|.+++++++.-+....+... .....-.+++++|.+. .....++||+..++++..+|
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~~~~~~------------~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL 200 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYHSQNWP------------NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLL 200 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCceecCCCC------------CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHH
Confidence 56899999999999875553322111 0111223444444433 34577999999999999887
Q ss_pred C--CCCceEEEEEecCCChHHHHHHHHHhhhhh-ceeccc------------ccc-----CC-hH---------------
Q 043214 140 N--NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-ISFLMR------------SCL-----QS-ES--------------- 183 (793)
Q Consensus 140 ~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq~~~~------------~~~-----~~-~~--------------- 183 (793)
. .+++++|+||||||+||||||+++|+.... |+.... ... .. ..
T Consensus 201 ~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~ 280 (1153)
T PLN03210 201 HLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD 280 (1153)
T ss_pred ccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC
Confidence 6 567999999999999999999999998766 531100 000 00 00
Q ss_pred ---HHHHHHHHHHhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecCCC------------------------
Q 043214 184 ---RRARRLCERLKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARNPD------------------------ 236 (793)
Q Consensus 184 ---~~~~~l~~~l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~------------------------ 236 (793)
.....+++++.+ ||+||||||||+..+|+.+.....+.++||+||||||++.
T Consensus 281 ~~~~~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 281 IKIYHLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred cccCCHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 001345666765 8999999999999999999877777889999999999875
Q ss_pred ----CCCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHHHcCCCCCCCCCCchhhhhhHHHHhhc
Q 043214 237 ----ISGDYAENEDLQSIAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQELRRPSGRSFTGVPAEAYSTIELSYNH 312 (793)
Q Consensus 237 ----~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~ 312 (793)
+++...+.+++.+++++|+++|+|+|||++++|+.|++++..+|+.++++++... +..+..++++||+.
T Consensus 360 F~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~-------~~~I~~~L~~SYd~ 432 (1153)
T PLN03210 360 FCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL-------DGKIEKTLRVSYDG 432 (1153)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-------cHHHHHHHHHhhhc
Confidence 2333445567889999999999999999999999999999999999999987633 56789999999999
Q ss_pred CCchhhHHHHHHhccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHccccccCCCCcceehhHHHHH
Q 043214 313 LEGEELKSTFLLCSLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKTSCLLLDGHTSEEFSMHDVVRD 392 (793)
Q Consensus 313 L~~~~lk~cfl~~s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~~sll~~~~~~~~~~mhdlv~~ 392 (793)
|+++..|.||+++|+||.+..+ +. +..|++.+.... ...++.|+++||++.. .+.+.|||++|+
T Consensus 433 L~~~~~k~~Fl~ia~ff~~~~~--~~-v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~--~~~~~MHdLl~~ 496 (1153)
T PLN03210 433 LNNKKDKAIFRHIACLFNGEKV--ND-IKLLLANSDLDV-----------NIGLKNLVDKSLIHVR--EDIVEMHSLLQE 496 (1153)
T ss_pred cCccchhhhhheehhhcCCCCH--HH-HHHHHHhcCCCc-----------hhChHHHHhcCCEEEc--CCeEEhhhHHHH
Confidence 9874479999999999986544 33 556777654321 1147789999999765 357999999999
Q ss_pred HHHHHHhcccceEEecCCCCCccccch---------hhhccCCeEEecCCCccc--------------------------
Q 043214 393 VAISIAFRDQGVFSMNDGVFPRGLSDK---------EALKRCPAISLHNCKIDE-------------------------- 437 (793)
Q Consensus 393 l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~l~~~~~~~-------------------------- 437 (793)
+|+.+++++.. .+++..+.|... .....++.+++....+..
T Consensus 497 ~~r~i~~~~~~----~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 497 MGKEIVRAQSN----EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHhhcC----CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 99999877631 111111112111 111233333333222211
Q ss_pred -------ccccC-C-CCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcc-cC
Q 043214 438 -------LLEGL-E-CPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGV-FG 507 (793)
Q Consensus 438 -------l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~-~~ 507 (793)
+|... . .++||.|.+.++... .+|..+ .+.+|+.|++.++.+..+|..+..+++|++|+|++|. +.
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~--~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYPLR--CMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCCCC--CCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 12111 1 234555555554433 555543 4567777888887777777777888888888888775 44
Q ss_pred CCcccccCCcccEEEecCC-CCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccc
Q 043214 508 DVSIIGELKTLEILSFQGS-NIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNV 586 (793)
Q Consensus 508 ~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 586 (793)
.++.++.+++|++|++++| .+..+|..++++++|++|++++|..+..+|.. + ++++|++|++++|.....++.
T Consensus 649 ~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~---- 722 (1153)
T PLN03210 649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPD---- 722 (1153)
T ss_pred cCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccccc----
Confidence 5667888888888888887 67788888888888888888888888888875 3 788888888888765433331
Q ss_pred cCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccC-----------cccccCCceEEEeecCC-cc
Q 043214 587 RSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWN-----------WSDQLQNSRILKLKLNN-ST 654 (793)
Q Consensus 587 ~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------~~~~~~~L~~L~l~~~~-~~ 654 (793)
..++|+.|++.++.+..+|..+.+++|..|.+..+.... ....+++|+.|+++++. ..
T Consensus 723 ----------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 723 ----------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred ----------ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc
Confidence 246788999999999889988777888888776532111 12235688999998864 44
Q ss_pred cchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccc
Q 043214 655 WLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLE 734 (793)
Q Consensus 655 ~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 734 (793)
.+|.++.. +++|+.|+|.+|..++.+|... .+++|+.|++++|..+..++. ..++|+.|++++ +.++
T Consensus 793 ~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~--------~~~nL~~L~Ls~-n~i~ 859 (1153)
T PLN03210 793 ELPSSIQN-LHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD--------ISTNISDLNLSR-TGIE 859 (1153)
T ss_pred ccChhhhC-CCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc--------cccccCEeECCC-CCCc
Confidence 57877654 7999999999998888877543 689999999999988765532 236789999988 6777
Q ss_pred cccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccccchhhh
Q 043214 735 KICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACKNMKEI 789 (793)
Q Consensus 735 ~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i 789 (793)
++ +...+.+++|+.|++++|++|+.+|. .+..+++|+.+++++|++|+++
T Consensus 860 ~i---P~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 860 EV---PWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cC---hHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence 77 44567899999999999999999876 3467899999999999988754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.6e-35 Score=307.50 Aligned_cols=221 Identities=29% Similarity=0.478 Sum_probs=169.3
Q ss_pred cHHHHHHHHHHhCC--CCceEEEEEecCCChHHHHHHHHHhhhh--h-ce-----------------------eccc---
Q 043214 128 RMSTLNDVLNALNN--PNVNMIGVYGMAGVGKTKLVKEAPRLAK--K-IS-----------------------FLMR--- 176 (793)
Q Consensus 128 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~-fq-----------------------~~~~--- 176 (793)
|+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.. . |+ +...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999986 7899999999999999999999998833 3 31 1112
Q ss_pred c-ccCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecCCCCC-----------------
Q 043214 177 S-CLQSESRRARRLCERLKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARNPDIS----------------- 238 (793)
Q Consensus 177 ~-~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~~----------------- 238 (793)
. ...+.......+.+.+.+ +|+||||||||+...|+.+..+++....||+||||||+....
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 233456678888888886 799999999999999999988888888899999999998611
Q ss_pred ------------CC-CCCChhhHHHHHHHHHHhCCCchHHHHHHHHHccC-ChHHHHHHHHHHcCCCCCCCCCCchhhhh
Q 043214 239 ------------GD-YAENEDLQSIAKDVAKACGCLPIAIVTIARALRNK-SVFEWKNALQELRRPSGRSFTGVPAEAYS 304 (793)
Q Consensus 239 ------------~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 304 (793)
.. ....+.+++.+++|+++|+|+|||++++|++|+.+ +..+|+.+++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 11 12344556789999999999999999999999754 788999999887655432 1123678999
Q ss_pred hHHHHhhcCCchhhHHHHHHhccccccccccHHHHHHHHhhccCCCC
Q 043214 305 TIELSYNHLEGEELKSTFLLCSLMVHIQSATIQYLLSYGMGLGLFGG 351 (793)
Q Consensus 305 ~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~~~~Li~~w~aeg~i~~ 351 (793)
++.+||+.||++ +|+||+|||+||+++.|+++.++++|+++|+++.
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999997 9999999999999999999999999999999874
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=7.6e-24 Score=258.58 Aligned_cols=175 Identities=29% Similarity=0.386 Sum_probs=88.8
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC-CCChhhhcccCCcEEEc
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP-SLPSSLCLLSNLQTLCL 501 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L 501 (793)
.+++++++++|.+....+...+++|++|+++++.+.. .+|.. +..+++|++|++++|.+. .+|..++++++|++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 4455555555544322222334555555555554432 33333 355555555555555544 45555555555555555
Q ss_pred CCcccCC--CcccccCCcccEEEecCCCCc-ccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 502 DYGVFGD--VSIIGELKTLEILSFQGSNIE-EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 502 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
++|.+.. |..++++++|++|++++|++. .+|..++++++|++|++++|...+.+|.. ++++++|++|++.+|.+.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeec
Confidence 5555443 455555555555555555544 45555555555555555555554445544 5555555555555554433
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccC
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDA 611 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~ 611 (793)
..+ ..+.++++|+.|++++|.+
T Consensus 275 ~~p-----------~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 275 PIP-----------PSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred cCc-----------hhHhhccCcCEEECcCCee
Confidence 322 2344445555555554444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=9.7e-24 Score=257.68 Aligned_cols=342 Identities=21% Similarity=0.253 Sum_probs=232.5
Q ss_pred hhccCCeEEecCCCcc-cccccC--CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC-CCChhhhcccCC
Q 043214 421 ALKRCPAISLHNCKID-ELLEGL--ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP-SLPSSLCLLSNL 496 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L 496 (793)
..+.++.|++++|.+. .+|... .+++|+.|+++++.+.. .+|. ..+++|++|++++|.+. .+|..++.+++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-ccCc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 4567777777777764 455433 67777777777776653 4553 45677888888888776 677788888888
Q ss_pred cEEEcCCcccCC--CcccccCCcccEEEecCCCCc-ccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccc
Q 043214 497 QTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIE-EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGY 573 (793)
Q Consensus 497 ~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 573 (793)
++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|++|++.+
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence 888888887654 677888888888888888766 67888888888888888888777777776 78888888888888
Q ss_pred cccceeecccccccCcccHHHhcCCCCCcEEEEEeccCC-ccCccc-ccccccEEEEEecCcc----CcccccCCceEEE
Q 043214 574 TFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDAN-VLPKGL-LSKKLKRYKIFIGDEW----NWSDQLQNSRILK 647 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~ 647 (793)
|.+.+..+ ..++.+++|+.|+++.|.+. .+|..+ .+++|+.|.++.+... .+...+++|+.|+
T Consensus 246 n~l~~~~p-----------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 246 NNLTGPIP-----------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred ceeccccC-----------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 87655444 47788889999999888764 455444 3478888888765422 2345677888888
Q ss_pred eecCCccc-chhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCc-------------
Q 043214 648 LKLNNSTW-LKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKH------------- 713 (793)
Q Consensus 648 l~~~~~~~-~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~------------- 713 (793)
+.++.... .|.++. .+++|+.|.+++|.....+|..+ +.+++|+.|++++|.....++.....
T Consensus 315 l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 315 LFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred CCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 88776553 444444 46888888888887766666666 67788888888877543333221100
Q ss_pred ------cCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccccch
Q 043214 714 ------VPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACKNM 786 (793)
Q Consensus 714 ------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 786 (793)
.....+++|+.|++.+|.--..+ +.....+++|+.|++++|. +...++. .+..+++|+.|++++|.-.
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNNN-LQGRINS-RKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeEC---ChhHhcCCCCCEEECcCCc-ccCccCh-hhccCCCCcEEECcCceee
Confidence 01234556666666664322222 2234467777777777773 4444332 3356788888888887543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.6e-24 Score=223.53 Aligned_cols=321 Identities=20% Similarity=0.255 Sum_probs=239.2
Q ss_pred hhhhccCCeEEecCCCccccccc-CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCc
Q 043214 419 KEALKRCPAISLHNCKIDELLEG-LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQ 497 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 497 (793)
.....++.||++..|.+.++..- ..+|.||++.+..|+.....+|+++| .+..|.+|||++|.+...|..+.+-+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcE
Confidence 34567899999999988665544 48999999999999887668999985 69999999999999999999999999999
Q ss_pred EEEcCCcccCC-Ccc-cccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccc
Q 043214 498 TLCLDYGVFGD-VSI-IGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTF 575 (793)
Q Consensus 498 ~L~L~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~ 575 (793)
+|+|++|++.. |.+ +-+|..|-+||+++|.+..+|+.+..|.+|++|.+++|.....--.. +..+++|++|+++++.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc
Confidence 99999999998 544 56899999999999999999999999999999999998653221111 4467788899988765
Q ss_pred cceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc-ccccccEEEEEecCccC---cccccCCceEEEeecC
Q 043214 576 VEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL-LSKKLKRYKIFIGDEWN---WSDQLQNSRILKLKLN 651 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~---~~~~~~~L~~L~l~~~ 651 (793)
.+.. .....+..|.+|+.+++++|++..+|+-+ ...+|++|.++++..-+ ....-.+|++|+++.|
T Consensus 209 RTl~----------N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 209 RTLD----------NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred chhh----------cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 4321 12246778889999999999999998876 34677777776554222 1233456777777777
Q ss_pred CcccchhhHHHhhcCCcEEEeccccCc-cccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccc
Q 043214 652 NSTWLKDDVFMQMKGIEELYLDEMRGV-KNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNL 730 (793)
Q Consensus 652 ~~~~~p~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 730 (793)
....+|..+-. +++|++|.+.+|+.. +-+|+.+ +.+.+|+.+...++ .++.+|.+ ...+++|+.|.|++
T Consensus 279 QLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEg-----lcRC~kL~kL~L~~- 348 (1255)
T KOG0444|consen 279 QLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEG-----LCRCVKLQKLKLDH- 348 (1255)
T ss_pred hhccchHHHhh-hHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-ccccCchh-----hhhhHHHHHhcccc-
Confidence 77777777654 577777777665432 2345544 66777777776654 35555433 34667778877775
Q ss_pred cccccccccccccccCCCCCeeeeccCCCCCccc
Q 043214 731 INLEKICHGKLKAESFCKLTTLKVKSCDKLSFIF 764 (793)
Q Consensus 731 ~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 764 (793)
+.|-.+ |..++-++.|+.|++..+|+|..-|
T Consensus 349 NrLiTL---PeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 349 NRLITL---PEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cceeec---hhhhhhcCCcceeeccCCcCccCCC
Confidence 666666 4455667778888888888776543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=5.5e-21 Score=233.33 Aligned_cols=286 Identities=21% Similarity=0.255 Sum_probs=164.2
Q ss_pred cceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEEecCC-CCcccChhcccCCCCCEEecCCC
Q 043214 472 ELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGS-NIEEFPREIGQLTRLRLLNLAYC 549 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~ 549 (793)
.||.|++.++++..+|..+ .+.+|+.|++.++.+.. +..+..+++|++|+++++ .+..+|. ++.+++|++|++++|
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC 667 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence 4555555555555555444 23455555555555444 444555555555555554 3444442 445555555555555
Q ss_pred cCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEecc-CCccCcccccccccEEEE
Q 043214 550 NLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQD-ANVLPKGLLSKKLKRYKI 628 (793)
Q Consensus 550 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~-~~~~~~~~~~~~L~~L~l 628 (793)
..+..+|.. ++++++|+.|++.+|.....+|. . .++++|+.|++++|. +..+|.. ..+|+.|.+
T Consensus 668 ~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~-----------~-i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L 732 (1153)
T PLN03210 668 SSLVELPSS-IQYLNKLEDLDMSRCENLEILPT-----------G-INLKSLYRLNLSGCSRLKSFPDI--STNISWLDL 732 (1153)
T ss_pred CCccccchh-hhccCCCCEEeCCCCCCcCccCC-----------c-CCCCCCCEEeCCCCCCccccccc--cCCcCeeec
Confidence 555555544 45555555555555443322220 0 134455555555432 2223321 234444544
Q ss_pred EecCccCc--ccccCCceEEEeecCCcc-------cchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEee
Q 043214 629 FIGDEWNW--SDQLQNSRILKLKLNNST-------WLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQ 699 (793)
Q Consensus 629 ~~~~~~~~--~~~~~~L~~L~l~~~~~~-------~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~ 699 (793)
..+..-.+ ...+++|+.|.+...... .+++.....+++|+.|.|++|.....+|..+ +++++|+.|+|+
T Consensus 733 ~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls 810 (1153)
T PLN03210 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIE 810 (1153)
T ss_pred CCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECC
Confidence 43321111 112334444444331111 1111222234678888888888777777776 788889999998
Q ss_pred cCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEE
Q 043214 700 NNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIE 779 (793)
Q Consensus 700 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~ 779 (793)
+|..++.+|... .+++|+.|++++|..+..++. ..++|+.|+++++ .++.+|. .+..+++|+.|+
T Consensus 811 ~C~~L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~ 875 (1153)
T PLN03210 811 NCINLETLPTGI------NLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLD 875 (1153)
T ss_pred CCCCcCeeCCCC------CccccCEEECCCCCccccccc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEE
Confidence 888887776432 578888999988888877642 2468888888887 6777765 568899999999
Q ss_pred eccccchhhhhh
Q 043214 780 VIACKNMKEIFA 791 (793)
Q Consensus 780 i~~C~~l~~i~~ 791 (793)
+.+|.+++.++.
T Consensus 876 L~~C~~L~~l~~ 887 (1153)
T PLN03210 876 MNGCNNLQRVSL 887 (1153)
T ss_pred CCCCCCcCccCc
Confidence 999999998764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.6e-22 Score=205.87 Aligned_cols=336 Identities=17% Similarity=0.223 Sum_probs=230.7
Q ss_pred hhccCCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcE
Q 043214 421 ALKRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQT 498 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~ 498 (793)
...+++.+++..|.+..+|.+. ...+++.|.+.+|.++ ++...-+..++.||+|||+.|.+..+|. ++..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~--sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS--SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccc--cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 4567777888888888888877 4456888888887766 5555556778888888888888876663 4444567888
Q ss_pred EEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccc
Q 043214 499 LCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTF 575 (793)
Q Consensus 499 L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~ 575 (793)
|+|++|.++. ...|.++.+|.+|.|+.|+++.+|.. +.+|++|+.|+|..|.. +.+.-..+..|++|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcC
Confidence 8888888777 56777888888888888888888764 55588888888887654 32222226778888888888877
Q ss_pred cceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc--ccccccEEEEEecCcc----CcccccCCceEEEee
Q 043214 576 VEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL--LSKKLKRYKIFIGDEW----NWSDQLQNSRILKLK 649 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~--~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~ 649 (793)
+...-.| .+..|.++++|++.-|++..+.++- .+++|+.|.++.+..- +..+-++.|+.|+|+
T Consensus 257 I~kL~DG-----------~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 257 ISKLDDG-----------AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred cccccCc-----------ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 6544332 4566778888888877776655432 3467777777654421 123447788888888
Q ss_pred cCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccc
Q 043214 650 LNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSN 729 (793)
Q Consensus 650 ~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 729 (793)
.|....+++..+..++.|+.|.|+.|.. +++-+ .....+.+|+.|+|+++.---.+.|. .....++|+|++|.+.+
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e-~af~~lssL~~LdLr~N~ls~~IEDa--a~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAE-GAFVGLSSLHKLDLRSNELSWCIEDA--AVAFNGLPSLRKLRLTG 401 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccch-HHHHh-hHHHHhhhhhhhcCcCCeEEEEEecc--hhhhccchhhhheeecC
Confidence 8888888887777788888888887753 22221 11256788888888877543333222 12445688888888888
Q ss_pred ccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEe
Q 043214 730 LINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEV 780 (793)
Q Consensus 730 ~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i 780 (793)
++++.++... ...+++|++|++.+++ +.++-+.. +.++ .|++|.+
T Consensus 402 -Nqlk~I~krA--fsgl~~LE~LdL~~Na-iaSIq~nA-Fe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 402 -NQLKSIPKRA--FSGLEALEHLDLGDNA-IASIQPNA-FEPM-ELKELVM 446 (873)
T ss_pred -ceeeecchhh--hccCcccceecCCCCc-ceeecccc-cccc-hhhhhhh
Confidence 7888886433 3468888888888874 55554432 3445 7777755
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=4.2e-22 Score=207.23 Aligned_cols=337 Identities=21% Similarity=0.244 Sum_probs=261.8
Q ss_pred hhhhccCCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC--CCChhhhcccC
Q 043214 419 KEALKRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP--SLPSSLCLLSN 495 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~i~~l~~ 495 (793)
...+..++.|-+....+..+|.-. .+.+|..|.+..|+.. .+...+ +.++.||.+++..|++. .+|..+-.|..
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~--~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI--SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH--hhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence 355667777777777777777655 6778888888877665 555554 77889999999999887 68999999999
Q ss_pred CcEEEcCCcccCC-CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccc
Q 043214 496 LQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGY 573 (793)
Q Consensus 496 L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 573 (793)
|..|+|+.|++.. |..+...+++-+|++++|+|..+|.. +.+|+-|-.|++++|. +..+|+. +.+|.+|++|.+++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCC
Confidence 9999999999988 99999999999999999999999986 5589999999999865 4778887 89999999999998
Q ss_pred cccceeecccccccCcccHHHhcCCCCCcEEEEEeccC--CccCccc-ccccccEEEEEecCc---cCcccccCCceEEE
Q 043214 574 TFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDA--NVLPKGL-LSKKLKRYKIFIGDE---WNWSDQLQNSRILK 647 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~--~~~~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~L~~L~ 647 (793)
|.+.. .-+..|.+++.|+.|.+++++- ..+|..+ .+.+|..+.++.+.- .+..-..++|+.|+
T Consensus 183 NPL~h-----------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 183 NPLNH-----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred ChhhH-----------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 87631 2345667777888888887653 5667665 346677766655442 22345678899999
Q ss_pred eecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCC-cceeccccCccCCccCcccceee
Q 043214 648 LKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPY-FLYVIDSVKHVPRDAFRALESLS 726 (793)
Q Consensus 648 l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~L~~L~ 726 (793)
|++|.+.++...+..+ .+|+.|.++.|.. +.+|..+ -.++.|+.|+..++.- .+.+|+ ..+.+..|+.+.
T Consensus 252 LS~N~iteL~~~~~~W-~~lEtLNlSrNQL-t~LP~av--cKL~kL~kLy~n~NkL~FeGiPS-----GIGKL~~Levf~ 322 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEW-ENLETLNLSRNQL-TVLPDAV--CKLTKLTKLYANNNKLTFEGIPS-----GIGKLIQLEVFH 322 (1255)
T ss_pred cCcCceeeeeccHHHH-hhhhhhccccchh-ccchHHH--hhhHHHHHHHhccCcccccCCcc-----chhhhhhhHHHH
Confidence 9998888877666553 7899999998865 4677776 7789999999887742 222222 345677888888
Q ss_pred cccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccccchh
Q 043214 727 LSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACKNMK 787 (793)
Q Consensus 727 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 787 (793)
..+ ++|+-+ |.....++.|++|.+.++ +|-.+|. .+..++-|+.|++.+.|+|.
T Consensus 323 aan-N~LElV---PEglcRC~kL~kL~L~~N-rLiTLPe--aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 323 AAN-NKLELV---PEGLCRCVKLQKLKLDHN-RLITLPE--AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhc-cccccC---chhhhhhHHHHHhccccc-ceeechh--hhhhcCCcceeeccCCcCcc
Confidence 887 788777 455678999999999765 7777876 57789999999999999885
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-20 Score=195.89 Aligned_cols=335 Identities=19% Similarity=0.245 Sum_probs=190.3
Q ss_pred ccCCeEEecCCCcccccccC--CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEE
Q 043214 423 KRCPAISLHNCKIDELLEGL--ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTL 499 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L 499 (793)
.++.+|++..|.+.++.... .++.||+|+++.|.++ .++..-|..-.+++.|+|++|.|+.+- ..|..+.+|-.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 34555555555554433321 4455555555555544 344444455555555555555555432 345555555555
Q ss_pred EcCCcccCC--CcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccc
Q 043214 500 CLDYGVFGD--VSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFV 576 (793)
Q Consensus 500 ~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 576 (793)
.|+.|.++. +..|.+|++|+.|+|..|.|+.. -..+..|++|+.|.+..|.. ..+..+++..+.++++|++..|.+
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeecccceeecccchh
Confidence 555555555 23444455555555555554432 22345555555555555433 234444455555555555555554
Q ss_pred ceeecccccccCcccHHHhcCCCCCcEEEEEeccCCcc--CcccccccccEEEEEecCccC----cccccCCceEEEeec
Q 043214 577 EWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVL--PKGLLSKKLKRYKIFIGDEWN----WSDQLQNSRILKLKL 650 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~ 650 (793)
..... ..+-.|+.|+.|+++.|.+..+ ..|-+.++|+.|.++.+..-. .+..++.|++|.|+.
T Consensus 282 ~~vn~-----------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 282 QAVNE-----------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred hhhhc-----------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 33222 1344455555555555555432 223344555555554433211 234567788999999
Q ss_pred CCcccchhhHHHhhcCCcEEEeccccCc---cccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeec
Q 043214 651 NNSTWLKDDVFMQMKGIEELYLDEMRGV---KNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSL 727 (793)
Q Consensus 651 ~~~~~~p~~~~~~l~~L~~L~L~~~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 727 (793)
|....+....+..+++|++|+|++|... ++-...+ .++|+|+.|.+.++ .++.++.. ...+|+.|+.|+|
T Consensus 351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f--~gl~~LrkL~l~gN-qlk~I~kr----Afsgl~~LE~LdL 423 (873)
T KOG4194|consen 351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF--NGLPSLRKLRLTGN-QLKSIPKR----AFSGLEALEHLDL 423 (873)
T ss_pred cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh--ccchhhhheeecCc-eeeecchh----hhccCcccceecC
Confidence 9999999888888999999999987642 2222333 56999999999987 46666432 5678999999999
Q ss_pred ccccccccccccccccccCCCCCeeeec------cCCCCCcccchHHhcCCCCCcEEEeccccch
Q 043214 728 SNLINLEKICHGKLKAESFCKLTTLKVK------SCDKLSFIFSFSVARSLPQLQTIEVIACKNM 786 (793)
Q Consensus 728 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~------~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 786 (793)
.+ +.+.++-...| ..| .|++|.+. +| +|+.+++ |+- =..|+.-.+-.|..-
T Consensus 424 ~~-NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCDC-ql~Wl~q--Wl~-~~~lq~sv~a~CayP 480 (873)
T KOG4194|consen 424 GD-NAIASIQPNAF--EPM-ELKELVMNSSSFLCDC-QLKWLAQ--WLY-RRKLQSSVIAKCAYP 480 (873)
T ss_pred CC-Ccceeeccccc--ccc-hhhhhhhcccceEEec-cHHHHHH--HHH-hcccccceeeeccCC
Confidence 98 67777632222 234 67777554 35 4665543 322 134445445555443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=2.4e-21 Score=192.17 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=139.9
Q ss_pred hhhccCCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 420 EALKRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
....++++++++.|....+++.+ ++..+..++..++++. ++|+++ ..+..|..|++.++.++.+|+..-+++.|+.
T Consensus 111 ~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHh
Confidence 34455666666666666655554 6666666666666665 666665 5667777777777777777766666777777
Q ss_pred EEcCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 499 LCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 499 L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
|+...|-++. |+.++.+.+|..|++..|.+..+| +|..+..|..|+++.| .++.+|.+...++.+|.+|++.+|.+.
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccc
Confidence 7777777766 777888888888888888887777 5777777887777664 346778776668888888888887764
Q ss_pred eeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecC
Q 043214 578 WEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGD 632 (793)
Q Consensus 578 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~ 632 (793)
.. | .++..+++|..|++++|.+..+|..+..-+|+.|.+.+.+
T Consensus 266 e~-P-----------de~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 266 EV-P-----------DEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred cC-c-----------hHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc
Confidence 32 2 4778888899999999999888877644466666655433
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=4.8e-20 Score=183.02 Aligned_cols=256 Identities=24% Similarity=0.335 Sum_probs=138.7
Q ss_pred CCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCC
Q 043214 425 CPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDY 503 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 503 (793)
+..+.+..|.+..+.... .+..+.+|.+..+... .+|+.+ +.+..+..|+.+++.+..+|..++.+.+|+.|+.+.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~--~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS--QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh--hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 344445555554333322 4555555555555544 555554 555555666666666666666666666666666666
Q ss_pred cccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecc
Q 043214 504 GVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEG 582 (793)
Q Consensus 504 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 582 (793)
+.+.. +++++.+..|+.|+..+|++..+|.+++++.+|..|++.+|.. +.+|+..+. ++.|++|+...|.+.. +|
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~-m~~L~~ld~~~N~L~t-lP- 199 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIA-MKRLKHLDCNSNLLET-LP- 199 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHH-HHHHHhcccchhhhhc-CC-
Confidence 65555 5566666666666666666666666666666666666655443 334444233 5566666544443321 11
Q ss_pred cccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCc--cC--cccccCCceEEEeecCCcccchh
Q 043214 583 LNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDE--WN--WSDQLQNSRILKLKLNNSTWLKD 658 (793)
Q Consensus 583 ~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~--~~~~~~~L~~L~l~~~~~~~~p~ 658 (793)
.+++.+.+|..|++..|.+..+|+.-.++.|..|++..... .+ ....++++..|+++.+...+.|.
T Consensus 200 ----------~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 200 ----------PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred ----------hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 35555555555555555555555433344444444432211 00 12245566666777777677776
Q ss_pred hHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCC
Q 043214 659 DVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 659 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
.+.. +.+|+.|+++++. ++.+|..+ +++ .|++|.+.+++
T Consensus 270 e~cl-LrsL~rLDlSNN~-is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICL-LRSLERLDLSNND-ISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HHHH-hhhhhhhcccCCc-cccCCccc--ccc-eeeehhhcCCc
Confidence 6643 4667777776654 33455555 566 66666666665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=3.8e-17 Score=178.93 Aligned_cols=330 Identities=22% Similarity=0.248 Sum_probs=194.0
Q ss_pred CCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCC
Q 043214 425 CPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDY 503 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 503 (793)
++.|++++|.+..+|..+ ..++|+.|.++.+.+. .+|.+. .++++|++|.|.+|.+..+|.++..+++|++|++++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh--hCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 666777777776666554 5667777777766555 555443 667777777777777777777777777777777777
Q ss_pred cccCC-CcccccCCcccEEEecCC-CCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeec
Q 043214 504 GVFGD-VSIIGELKTLEILSFQGS-NIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIE 581 (793)
Q Consensus 504 ~~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 581 (793)
|.+.. |.-+..+..+..++.++| .+..++... .+++++..+.....++.+ +..++. .|++.+|.+.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---- 191 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---- 191 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh----
Confidence 77666 666666777777777666 333443211 566666666555566655 455554 5666666543
Q ss_pred ccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccC--cccccCCceEEEeecCCcccchhh
Q 043214 582 GLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWN--WSDQLQNSRILKLKLNNSTWLKDD 659 (793)
Q Consensus 582 ~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~~~~~p~~ 659 (793)
...+..+.+|+.|....|.+..+.- .-++|+.|....++.-. ..+.+.+|+.++++.+....+|.|
T Consensus 192 ----------~~dls~~~~l~~l~c~rn~ls~l~~--~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w 259 (1081)
T KOG0618|consen 192 ----------VLDLSNLANLEVLHCERNQLSELEI--SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW 259 (1081)
T ss_pred ----------hhhhhhccchhhhhhhhcccceEEe--cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH
Confidence 1345555566666555555443221 12444444443333211 123445666666666666666666
Q ss_pred HHHhhcCCcEEEeccccC----------------------ccccccccccCCCCCCCceEeecCCCcceeccccC-----
Q 043214 660 VFMQMKGIEELYLDEMRG----------------------VKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVK----- 712 (793)
Q Consensus 660 ~~~~l~~L~~L~L~~~~~----------------------~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----- 712 (793)
+.. +.+|+.+....+.. ++.+|... +++.+|++|++..+. +..+|+.+.
T Consensus 260 i~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l--e~~~sL~tLdL~~N~-L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 260 IGA-CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL--EGLKSLRTLDLQSNN-LPSLPDNFLAVLNA 335 (1081)
T ss_pred HHh-cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc--cccceeeeeeehhcc-ccccchHHHhhhhH
Confidence 654 46666666555432 22334333 567788888887764 333322110
Q ss_pred ----------------ccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCc
Q 043214 713 ----------------HVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQ 776 (793)
Q Consensus 713 ----------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~ 776 (793)
......++.|+.|.+.+ +.|++-++ ....+|++|+.|+++++ +|..+|. ..+.+++.|+
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~--p~l~~~~hLKVLhLsyN-rL~~fpa-s~~~kle~Le 410 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCF--PVLVNFKHLKVLHLSYN-RLNSFPA-SKLRKLEELE 410 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccch--hhhccccceeeeeeccc-ccccCCH-HHHhchHHhH
Confidence 01223344556666655 45544221 12347888888888887 6777755 4567888888
Q ss_pred EEEeccccchhhhhh
Q 043214 777 TIEVIACKNMKEIFA 791 (793)
Q Consensus 777 ~L~i~~C~~l~~i~~ 791 (793)
+|++++. +|+.|+.
T Consensus 411 eL~LSGN-kL~~Lp~ 424 (1081)
T KOG0618|consen 411 ELNLSGN-KLTTLPD 424 (1081)
T ss_pred HHhcccc-hhhhhhH
Confidence 8888874 5665553
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=2.6e-16 Score=172.49 Aligned_cols=218 Identities=21% Similarity=0.270 Sum_probs=148.6
Q ss_pred CcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHh
Q 043214 516 KTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHEL 595 (793)
Q Consensus 516 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 595 (793)
.+|++++++.++++.+|..++.+.+|..+++.+|.. ..+|.. +....+|+.|.+..|.+.... ..+
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~r-i~~~~~L~~l~~~~nel~yip------------~~l 306 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLR-ISRITSLVSLSAAYNELEYIP------------PFL 306 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHH-HhhhhhHHHHHhhhhhhhhCC------------Ccc
Confidence 456666666666666676666777777777666544 555655 566666666666666554332 356
Q ss_pred cCCCCCcEEEEEeccCCccCccccc---------------------------ccccEEEEEec----CccCcccccCCce
Q 043214 596 KQLSYLTNLEIQIQDANVLPKGLLS---------------------------KKLKRYKIFIG----DEWNWSDQLQNSR 644 (793)
Q Consensus 596 ~~l~~L~~L~i~~~~~~~~~~~~~~---------------------------~~L~~L~l~~~----~~~~~~~~~~~L~ 644 (793)
..++.|++|++..|.+..+|+.... +.|+.|.+-++ ..|+.+..+.+|+
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 6788999999999999888875421 11112222111 1233466788899
Q ss_pred EEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccce
Q 043214 645 ILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALES 724 (793)
Q Consensus 645 ~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 724 (793)
.|+|+.|....+|..-...++.|+.|.|++|.. +.+|..+ ..++.|+.|...++. +..+| ....+|.|+.
T Consensus 387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tv--a~~~~L~tL~ahsN~-l~~fP------e~~~l~qL~~ 456 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTV--ANLGRLHTLRAHSNQ-LLSFP------ELAQLPQLKV 456 (1081)
T ss_pred eeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHH--HhhhhhHHHhhcCCc-eeech------hhhhcCcceE
Confidence 999999988889988877788999999999864 5677666 778999999887764 33333 2346789999
Q ss_pred eecccccccccccccccccccC-CCCCeeeeccCCCCC
Q 043214 725 LSLSNLINLEKICHGKLKAESF-CKLTTLKVKSCDKLS 761 (793)
Q Consensus 725 L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~C~~L~ 761 (793)
++++. ++|+++. .+...= |+|++|+++|++++.
T Consensus 457 lDlS~-N~L~~~~---l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 457 LDLSC-NNLSEVT---LPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred Eeccc-chhhhhh---hhhhCCCcccceeeccCCcccc
Confidence 99985 8888762 222222 799999999998744
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.57 E-value=2.4e-15 Score=174.34 Aligned_cols=327 Identities=23% Similarity=0.280 Sum_probs=217.4
Q ss_pred CcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCc--CCCCCh-hhhcccCCcEEEcCCcc-cCC-
Q 043214 434 KIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMH--LPSLPS-SLCLLSNLQTLCLDYGV-FGD- 508 (793)
Q Consensus 434 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~--~~~lp~-~i~~l~~L~~L~L~~~~-~~~- 508 (793)
.....|........|...+.++... .++.. ..++.|++|-+.++. +..++. .|..++.|++|||++|. +..
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~--~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIE--HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred CccccccccchhheeEEEEeccchh--hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 3344566666778888888777665 45553 356689999999986 566654 47889999999999885 555
Q ss_pred CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccC
Q 043214 509 VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRS 588 (793)
Q Consensus 509 ~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 588 (793)
|.+|+.|.+|++|+++++.+..+|.++++|.+|.+|++..+..+..+| ++...+.+|++|.+...... .+
T Consensus 588 P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~---------~~ 657 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS---------ND 657 (889)
T ss_pred ChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccc---------cc
Confidence 999999999999999999999999999999999999999988777765 44667999999998765421 44
Q ss_pred cccHHHhcCCCCCcEEEEEeccCCccCccccccccc----EEEEEecC---ccCcccccCCceEEEeecCCcccchh-h-
Q 043214 589 KASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLK----RYKIFIGD---EWNWSDQLQNSRILKLKLNNSTWLKD-D- 659 (793)
Q Consensus 589 ~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~----~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~p~-~- 659 (793)
...+.++..+.+|+.+.++......+-+.....+|. .+.+..+. .......+.+|+.|.+..+....... |
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccc
Confidence 557788888999998888755441111111222222 22221111 11134567777888877755542211 1
Q ss_pred ---HHH-hhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCcc-----CCccCccccee-eccc
Q 043214 660 ---VFM-QMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHV-----PRDAFRALESL-SLSN 729 (793)
Q Consensus 660 ---~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~~~~~~L~~L-~l~~ 729 (793)
... .++++.++.+.+|.....+.+. .-.|+|+.|++..|..++.++...... ....|++++.+ .+.+
T Consensus 738 ~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~ 814 (889)
T KOG4658|consen 738 ESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS 814 (889)
T ss_pred cccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec
Confidence 111 1456667777777766554432 245899999999888877665432211 12456666666 4666
Q ss_pred ccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccc-cchhhh
Q 043214 730 LINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIAC-KNMKEI 789 (793)
Q Consensus 730 ~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C-~~l~~i 789 (793)
.+.+..+.+.+.. +++|+.+.+..||++..+ |.+.++.+.+| +++..+
T Consensus 815 l~~l~~i~~~~l~---~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 815 LGGLPQLYWLPLS---FLKLEELIVEECPKLGKL---------PLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred CCCCceeEecccC---ccchhheehhcCcccccC---------ccccccceeccccceeec
Confidence 6666665443333 556888888888877654 45566666665 544443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.5e-17 Score=142.04 Aligned_cols=167 Identities=24% Similarity=0.369 Sum_probs=143.2
Q ss_pred cccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-Ccccc
Q 043214 435 IDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIG 513 (793)
Q Consensus 435 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~ 513 (793)
+..++....++++..|.++.+... .+|+.+ ..+.+|++|++.+|.++.+|.+++.++.||.|++.-|.+.. |..++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~--~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT--VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee--ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345566667888888888888777 778876 78999999999999999999999999999999999998777 89999
Q ss_pred cCCcccEEEecCCCCc--ccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCccc
Q 043214 514 ELKTLEILSFQGSNIE--EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKAS 591 (793)
Q Consensus 514 ~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 591 (793)
.++.|+.||+.+|++. .+|..+-.++-|+-|++++|.+ +.+|++ ++++++||.|.+.+|.+.. .
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll~------------l 165 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLLS------------L 165 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchhh------------C
Confidence 9999999999999776 7898888899999999999876 678888 8999999999998886542 2
Q ss_pred HHHhcCCCCCcEEEEEeccCCccCccc
Q 043214 592 LHELKQLSYLTNLEIQIQDANVLPKGL 618 (793)
Q Consensus 592 l~~l~~l~~L~~L~i~~~~~~~~~~~~ 618 (793)
.++++.++.|+.|+|.+|.+..+|+.+
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhh
Confidence 368899999999999999998888764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=2.7e-14 Score=162.03 Aligned_cols=253 Identities=19% Similarity=0.152 Sum_probs=144.2
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGV 505 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 505 (793)
..|+++++.+..+|... .++|+.|.+..|.+. .+|. .+++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt--~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC--CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 35666666666666644 246777777776655 5553 246778888888777777653 3567777777777
Q ss_pred cCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeeccccc
Q 043214 506 FGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNN 585 (793)
Q Consensus 506 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 585 (793)
+..++. ...+|+.|++++|+++.+|.. +++|+.|++++|.. ..+|.. ..+|+.|.+.+|.+.. +|.
T Consensus 274 L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls~N~L~~-LP~--- 339 (788)
T PRK15387 274 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL----PSELCKLWAYNNQLTS-LPT--- 339 (788)
T ss_pred hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC----cccccccccccCcccc-ccc---
Confidence 666322 125677777777777777752 46777888877654 345541 2356667777665532 110
Q ss_pred ccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhc
Q 043214 586 VRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMK 665 (793)
Q Consensus 586 ~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~ 665 (793)
...+|+.|++++|.+..+|.. +++|+.|++.++....+|.. ++
T Consensus 340 -----------lp~~Lq~LdLS~N~Ls~LP~l----------------------p~~L~~L~Ls~N~L~~LP~l----~~ 382 (788)
T PRK15387 340 -----------LPSGLQELSVSDNQLASLPTL----------------------PSELYKLWAYNNRLTSLPAL----PS 382 (788)
T ss_pred -----------cccccceEecCCCccCCCCCC----------------------CcccceehhhccccccCccc----cc
Confidence 113677777777777766642 22333444444444444421 24
Q ss_pred CCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccccccccccc
Q 043214 666 GIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAES 745 (793)
Q Consensus 666 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 745 (793)
+|+.|++++|... .+|. ..++|+.|++++|. +..+|. .+.+|+.|++++ ++++.+ +.....
T Consensus 383 ~L~~LdLs~N~Lt-~LP~-----l~s~L~~LdLS~N~-LssIP~--------l~~~L~~L~Ls~-NqLt~L---P~sl~~ 443 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPV-----LPSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYR-NQLTRL---PESLIH 443 (788)
T ss_pred ccceEEecCCccc-CCCC-----cccCCCEEEccCCc-CCCCCc--------chhhhhhhhhcc-Cccccc---ChHHhh
Confidence 5666666655432 2332 12456666666653 222221 123556666665 455555 223445
Q ss_pred CCCCCeeeeccCC
Q 043214 746 FCKLTTLKVKSCD 758 (793)
Q Consensus 746 ~~~L~~L~l~~C~ 758 (793)
+++|+.|++++|+
T Consensus 444 L~~L~~LdLs~N~ 456 (788)
T PRK15387 444 LSSETTVNLEGNP 456 (788)
T ss_pred ccCCCeEECCCCC
Confidence 6666666666663
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=4.3e-14 Score=160.41 Aligned_cols=254 Identities=17% Similarity=0.082 Sum_probs=149.5
Q ss_pred ceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCc
Q 043214 473 LRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLL 552 (793)
Q Consensus 473 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 552 (793)
-..|+++++.++.+|..+. .+|+.|++.+|+++.++. .+++|++|++++|+++.+|.. .++|++|++++|..
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L- 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL- 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCch-
Confidence 3445555555555555443 255555555555555222 134555555555555555532 24555555555432
Q ss_pred cccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecC
Q 043214 553 KVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGD 632 (793)
Q Consensus 553 ~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~ 632 (793)
..+|. .+.+|+.|++.+|.+... | . .+++|+.|++++|.+..+|.. ..+|+.|.+..+.
T Consensus 275 ~~Lp~----lp~~L~~L~Ls~N~Lt~L-P------------~--~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~ 333 (788)
T PRK15387 275 THLPA----LPSGLCKLWIFGNQLTSL-P------------V--LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQ 333 (788)
T ss_pred hhhhh----chhhcCEEECcCCccccc-c------------c--cccccceeECCCCccccCCCC--cccccccccccCc
Confidence 33332 123455555555544311 1 0 123455555555555554431 2344444444332
Q ss_pred ccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccC
Q 043214 633 EWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVK 712 (793)
Q Consensus 633 ~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 712 (793)
.-.....+.+|+.|++++|....+|.. .++|+.|.+++|.. ..+|.. .++|+.|++++|. +..+|.
T Consensus 334 L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L-~~LP~l-----~~~L~~LdLs~N~-Lt~LP~--- 399 (788)
T PRK15387 334 LTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRL-TSLPAL-----PSGLKELIVSGNR-LTSLPV--- 399 (788)
T ss_pred cccccccccccceEecCCCccCCCCCC----Ccccceehhhcccc-ccCccc-----ccccceEEecCCc-ccCCCC---
Confidence 211112235788999999888888753 47889999988754 345432 3689999999885 333321
Q ss_pred ccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 713 HVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 713 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
.+++|+.|++++ +.++.+|. ...+|+.|++++| +++.+|. .+.++++|+.|++++++
T Consensus 400 -----l~s~L~~LdLS~-N~LssIP~------l~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 -----LPSELKELMVSG-NRLTSLPM------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 456 (788)
T ss_pred -----cccCCCEEEccC-CcCCCCCc------chhhhhhhhhccC-cccccCh--HHhhccCCCeEECCCCC
Confidence 246899999999 67887742 2357899999988 6898875 35689999999998875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2.3e-13 Score=155.70 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=132.6
Q ss_pred cCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCC
Q 043214 424 RCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDY 503 (793)
Q Consensus 424 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 503 (793)
+...+.+.++.+..+|..+ .++++.|++.+|.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt--sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELK--SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC--cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 3455666666666666543 346777777766655 5665543 367777777777776666543 3677777777
Q ss_pred cccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecc
Q 043214 504 GVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEG 582 (793)
Q Consensus 504 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 582 (793)
|.+.. |..+. .+|++|++++|++..+|..+. ++|++|++++|.. ..+|.. + .++|+.|++++|.+... +.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-l--p~sL~~L~Ls~N~Lt~L-P~ 321 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-L--PSGITHLNVQSNSLTAL-PE 321 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-c--hhhHHHHHhcCCccccC-Cc
Confidence 76666 44443 467777777777776666443 4677777776644 345543 2 23566666666655421 10
Q ss_pred cccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcc-cccCCceEEEeecCCcccchhhHH
Q 043214 583 LNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWS-DQLQNSRILKLKLNNSTWLKDDVF 661 (793)
Q Consensus 583 ~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~p~~~~ 661 (793)
.+ .++|+.|++.+|.+..+|..+. ++|+.|.++.+..-... ..++.|+.|++++|....+|..+.
T Consensus 322 -----------~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 322 -----------TL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred -----------cc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhHH
Confidence 01 1456667777666666665432 44555544433211100 112455566666655555555443
Q ss_pred HhhcCCcEEEeccccCccccccccc--cCCCCCCCceEeecCC
Q 043214 662 MQMKGIEELYLDEMRGVKNIVYDLD--REGFPKLKHPQIQNNP 702 (793)
Q Consensus 662 ~~l~~L~~L~L~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 702 (793)
.+|+.|++++|... .+|..+. ...+|++..|.+.+++
T Consensus 388 ---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 ---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 34555666555432 3332220 1234555666665554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2e-13 Score=156.14 Aligned_cols=246 Identities=20% Similarity=0.197 Sum_probs=132.1
Q ss_pred CccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEEec
Q 043214 446 QLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQ 524 (793)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~ 524 (793)
+...|.+.+..+. .+|..+ .++|+.|++++|.++.+|..+. .+|++|++++|.+.. |..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt--sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT--TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC--cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 4456666665544 566543 2467777777777777776553 477777777777666 43332 367777777
Q ss_pred CCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEE
Q 043214 525 GSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNL 604 (793)
Q Consensus 525 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 604 (793)
+|++..+|..+. .+|+.|++++|.. ..+|.. + .++|+.|++++|.+... +. .+ .++|+.|
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~-l--~~sL~~L~Ls~N~Lt~L-P~-----------~l--p~sL~~L 309 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKI-SCLPEN-L--PEELRYLSVYDNSIRTL-PA-----------HL--PSGITHL 309 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCcc-Cccccc-c--CCCCcEEECCCCccccC-cc-----------cc--hhhHHHH
Confidence 777777776553 4677777776544 456654 2 24677777777755421 10 11 1346666
Q ss_pred EEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccc
Q 043214 605 EIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYD 684 (793)
Q Consensus 605 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~ 684 (793)
++++|.+..+|..+ +++|+.|.+.++....+|..+ +++|+.|++++|.. ..+|..
T Consensus 310 ~Ls~N~Lt~LP~~l---------------------~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L-~~LP~~ 364 (754)
T PRK15370 310 NVQSNSLTALPETL---------------------PPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQI-TVLPET 364 (754)
T ss_pred HhcCCccccCCccc---------------------cccceeccccCCccccCChhh---cCcccEEECCCCCC-CcCChh
Confidence 77776666655432 234444444444444444433 24566666655542 233322
Q ss_pred cccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccccc-ccccccCCCCCeeeeccCC
Q 043214 685 LDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHG-KLKAESFCKLTTLKVKSCD 758 (793)
Q Consensus 685 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~L~~L~l~~C~ 758 (793)
+ .++|+.|+|++|. +..+|.. ..++|+.|++++ +++..+|.. +.....+|++..|++.++|
T Consensus 365 l----p~~L~~LdLs~N~-Lt~LP~~-------l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 365 L----PPTITTLDVSRNA-LTNLPEN-------LPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred h----cCCcCEEECCCCc-CCCCCHh-------HHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2 2456666666553 2222221 112455566555 445444321 1111223555566665554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=3.7e-15 Score=131.43 Aligned_cols=158 Identities=22% Similarity=0.362 Sum_probs=136.2
Q ss_pred hhhhccCCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCc
Q 043214 419 KEALKRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQ 497 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 497 (793)
.-....++++.++.|++..+|+.+ .+.+|+.|+++++++. .+|.++ +.++.||.|+++-|.+..+|..|+.++-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhh-hhchhhhheecchhhhhcCccccCCCchhh
Confidence 344567888899999998888776 8999999999998877 788876 889999999999999999999999999999
Q ss_pred EEEcCCcccCC---CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 498 TLCLDYGVFGD---VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 498 ~L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
.|+|.+|++.. |..+..+..|+.|.++.|.++-+|..+++|++|+.|.+.+|.. -.+|.+ ++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcHH-HHHHHHHHHHhcccc
Confidence 99999998765 7888888899999999999999999999999999999998765 468887 899999999999998
Q ss_pred ccceeec
Q 043214 575 FVEWEIE 581 (793)
Q Consensus 575 ~~~~~~~ 581 (793)
.+....|
T Consensus 184 rl~vlpp 190 (264)
T KOG0617|consen 184 RLTVLPP 190 (264)
T ss_pred eeeecCh
Confidence 8765444
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-12 Score=130.02 Aligned_cols=233 Identities=20% Similarity=0.279 Sum_probs=122.3
Q ss_pred ccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCC-cccCC-C-cccccCCcccEEE
Q 043214 447 LKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDY-GVFGD-V-SIIGELKTLEILS 522 (793)
Q Consensus 447 L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~-~~~~~-~-~~i~~l~~L~~L~ 522 (793)
...+.+..|.++ .||+..|+.++.||.|||+.|.|+.+ |+.|..+.+|..|-+.+ |+|+. | ..|++|..|+.|.
T Consensus 69 tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 334444444444 55555556666666666666655532 45555555555554444 45555 2 3455555555555
Q ss_pred ecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccc------ceee----------cc---
Q 043214 523 FQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFV------EWEI----------EG--- 582 (793)
Q Consensus 523 l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~------~~~~----------~~--- 582 (793)
+.-|++.-++. .+..|++|..|.+.+|.. ..++...+..+.+++++++..|.+ .|.. .|
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 55555553332 355555555555555332 344443344555555554433321 1000 00
Q ss_pred -------------------------c-------ccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEe
Q 043214 583 -------------------------L-------NNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFI 630 (793)
Q Consensus 583 -------------------------~-------~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~ 630 (793)
+ ...........+..|++|++|++++|.+..+.+..
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a------------ 293 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA------------ 293 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh------------
Confidence 0 00011122345677888888888888777665543
Q ss_pred cCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCC
Q 043214 631 GDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 631 ~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
+.....++.|.|..|....+...++..+++|+.|.|++|....--|..+ ..+.+|..|++-.++
T Consensus 294 ------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 294 ------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNP 357 (498)
T ss_pred ------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--cccceeeeeehccCc
Confidence 2345556666666666666666666666666667766665544444444 455566666655444
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=2.2e-12 Score=129.02 Aligned_cols=105 Identities=22% Similarity=0.285 Sum_probs=91.2
Q ss_pred cceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecC-CCCcccChh-cccCCCCCEEec
Q 043214 472 ELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQG-SNIEEFPRE-IGQLTRLRLLNL 546 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~-~~l~~lp~~-i~~L~~L~~L~l 546 (793)
.-..++|..|.|+.+| ..|+.+++||.|+|+.|.|+. |..|.++++|..|-+.+ |+|+.+|.+ ++.|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3467899999999887 578999999999999999887 88999999999888887 699999986 889999999998
Q ss_pred CCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 547 AYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 547 ~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
.-|.. ..++...+..+++|..|.+.+|.+.
T Consensus 148 Nan~i-~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 148 NANHI-NCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred Chhhh-cchhHHHHHHhhhcchhcccchhhh
Confidence 87654 6677777999999999999988764
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=8.5e-11 Score=124.86 Aligned_cols=266 Identities=19% Similarity=0.101 Sum_probs=126.4
Q ss_pred hcCCCcceEEEecCCcCC-----CCChhhhcccCCcEEEcCCcccCC--------CcccccCCcccEEEecCCCCc-ccC
Q 043214 467 FIGMTELRVLDFVAMHLP-----SLPSSLCLLSNLQTLCLDYGVFGD--------VSIIGELKTLEILSFQGSNIE-EFP 532 (793)
Q Consensus 467 ~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--------~~~i~~l~~L~~L~l~~~~l~-~lp 532 (793)
|..+..|++|+++++.+. .++..+...++|++|+++++.+.. +..+..+++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 455555666666666653 244455555566666666665441 134455666777777666554 333
Q ss_pred hhcccCCC---CCEEecCCCcCcc----ccChhhhcCC-CCcceeeccccccceeecccccccCcccHHHhcCCCCCcEE
Q 043214 533 REIGQLTR---LRLLNLAYCNLLK----VIPSNVLSSL-SRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNL 604 (793)
Q Consensus 533 ~~i~~L~~---L~~L~l~~~~~~~----~~p~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 604 (793)
..+..+.+ |++|++++|.... .+... +..+ ++|++|++.+|.+..... ......+..+++|++|
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~-------~~~~~~~~~~~~L~~L 170 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASC-------EALAKALRANRDLKEL 170 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHH-------HHHHHHHHhCCCcCEE
Confidence 34444444 7777776665431 11111 3444 666777777666542211 1123445556667777
Q ss_pred EEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccc-----hhhHHHhhcCCcEEEeccccCcc
Q 043214 605 EIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWL-----KDDVFMQMKGIEELYLDEMRGVK 679 (793)
Q Consensus 605 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----p~~~~~~l~~L~~L~L~~~~~~~ 679 (793)
+++++.+........... ....++|+.|+++++..... +..+ ..+++|+.|++++|....
T Consensus 171 ~l~~n~l~~~~~~~l~~~--------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 171 NLANNGIGDAGIRALAEG--------------LKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ECcCCCCchHHHHHHHHH--------------HHhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEEecCCCcCch
Confidence 776665542100000000 01123444444444433211 1111 224667777777765332
Q ss_pred ccccccc---cCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccccc--ccccccC-CCCCeee
Q 043214 680 NIVYDLD---REGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHG--KLKAESF-CKLTTLK 753 (793)
Q Consensus 680 ~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~-~~L~~L~ 753 (793)
.....+. ....+.|++|++++|.....- ..........+++|+.|++++ +.+...... ......+ +.|++|+
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDG-AKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHH-HHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 1111110 012467888888777422000 000001223446788888877 445433100 1111233 5677777
Q ss_pred eccC
Q 043214 754 VKSC 757 (793)
Q Consensus 754 l~~C 757 (793)
|.+.
T Consensus 314 ~~~~ 317 (319)
T cd00116 314 VKDD 317 (319)
T ss_pred cCCC
Confidence 6654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=1.1e-10 Score=124.15 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=19.0
Q ss_pred cCCcEEEeccccCc----cccccccccCCCCCCCceEeecCC
Q 043214 665 KGIEELYLDEMRGV----KNIVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 665 ~~L~~L~L~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
++|++|.+.+|... ..+...+ ..+++|+++++++|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVL--AEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHH--hcCCCccEEECCCCC
Confidence 46666666666432 1112222 344667777776664
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1.6e-10 Score=121.22 Aligned_cols=173 Identities=25% Similarity=0.369 Sum_probs=78.8
Q ss_pred eEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcc
Q 043214 427 AISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGV 505 (793)
Q Consensus 427 ~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 505 (793)
.++++.|.+..+|... .+-.|..+.+..+.+. .+|..+ ..+..|.+|+|+.|.+..+|..++.| -|+.|.+++|+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIR--TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccce--ecchhh-hhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCc
Confidence 3444444444444333 3333444444444333 344333 44455555555555555555444443 24555555555
Q ss_pred cCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccc
Q 043214 506 FGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLN 584 (793)
Q Consensus 506 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 584 (793)
++. |+.++.+..|..||.+.|++..+|..++.|.+|+.|++..|.. ..+|++ +..| .|..|++++|.+....
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp~E-l~~L-pLi~lDfScNkis~iP---- 227 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLPEE-LCSL-PLIRLDFSCNKISYLP---- 227 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCCHH-HhCC-ceeeeecccCceeecc----
Confidence 444 4445544555555555555555555555555555555544333 334444 2322 2445555444433211
Q ss_pred cccCcccHHHhcCCCCCcEEEEEeccCCccCccc
Q 043214 585 NVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL 618 (793)
Q Consensus 585 ~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~ 618 (793)
-.+.+|++|++|.+.+|-+..-|..+
T Consensus 228 --------v~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 228 --------VDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred --------hhhhhhhhheeeeeccCCCCCChHHH
Confidence 24445555555555555544444433
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.2e-09 Score=100.13 Aligned_cols=129 Identities=21% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCCcceEEEecCCcCCCCChhhh-cccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChhc-ccCCCCCEEec
Q 043214 469 GMTELRVLDFVAMHLPSLPSSLC-LLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREI-GQLTRLRLLNL 546 (793)
Q Consensus 469 ~~~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l 546 (793)
+...++.|+|+++.++.+. .++ .+.+|+.|++++|.+..++.+..+++|++|++++|.|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445677777777766553 344 46677777777777777666777777777777777777766544 35777777777
Q ss_pred CCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEE
Q 043214 547 AYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEI 606 (793)
Q Consensus 547 ~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i 606 (793)
++|.....---..++.+++|++|++.+|++.... .--..-+..+++|+.|+-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~--------~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK--------NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST--------THHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchh--------hHHHHHHHHcChhheeCC
Confidence 7665422111011556677777777766654211 112233455666666653
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=8.4e-09 Score=96.30 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=32.5
Q ss_pred CCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCC-ccc-ccCCcccEEEecCCCCcccC--hhcccCCCCCEEe
Q 043214 470 MTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDV-SII-GELKTLEILSFQGSNIEEFP--REIGQLTRLRLLN 545 (793)
Q Consensus 470 ~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-~~i-~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~ 545 (793)
+.+|++|++++|.++.++ .+..+++|+.|++++|.+..+ +.+ ..+++|++|++++|+|..+- ..+..+++|++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 445555555555555443 244555555555555555553 223 23555555555555554332 2344556666666
Q ss_pred cCCCcCccc--cChhhhcCCCCcceeec
Q 043214 546 LAYCNLLKV--IPSNVLSSLSRLEELYM 571 (793)
Q Consensus 546 l~~~~~~~~--~p~~~i~~l~~L~~L~l 571 (793)
+.+|+.... -...++..+++|+.|+.
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCC
Confidence 665544321 11223556666666663
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=3.9e-10 Score=118.26 Aligned_cols=150 Identities=22% Similarity=0.347 Sum_probs=118.5
Q ss_pred hccCCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEE
Q 043214 422 LKRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLC 500 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 500 (793)
...+..+.+..|.+..+|... .+..|.+++++.++++ .+|..+ ..--|++|.+++|.++.+|..++.+.+|..|+
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~l--C~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGL--CDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhh--hcCcceeEEEecCccccCCcccccchhHHHhh
Confidence 344555566666676666655 7788888888888877 677765 24568899999999999998888888899999
Q ss_pred cCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 501 LDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 501 L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
.+.|.+.. |+.++.+.+|+.|+++.|++..+|..+..| .|..||++.|+ +..+|-. +.+++.|++|-+..|.+..
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeeeeccCCCCC
Confidence 99988877 888999999999999999888898888844 48888887654 4678877 8889999999988887754
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.2e-09 Score=103.78 Aligned_cols=135 Identities=21% Similarity=0.230 Sum_probs=108.0
Q ss_pred CCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCC
Q 043214 470 MTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYC 549 (793)
Q Consensus 470 ~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 549 (793)
-+.|..+||++|.++.+-.++.-++.+|.|+++.|.+....++..+++|+.||+++|.+.++-..-.+|-+.++|.+++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 46788899999999988888888899999999999988888899999999999999988776544457788899999886
Q ss_pred cCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcc
Q 043214 550 NLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKG 617 (793)
Q Consensus 550 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~ 617 (793)
.. ..+.. ++++-+|..|++.+|.+.. ......+++++.|+.|.+.+|.+..+++.
T Consensus 363 ~i-E~LSG--L~KLYSLvnLDl~~N~Ie~----------ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 363 KI-ETLSG--LRKLYSLVNLDLSSNQIEE----------LDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hH-hhhhh--hHhhhhheeccccccchhh----------HHHhcccccccHHHHHhhcCCCccccchH
Confidence 43 44443 7888899999999887632 22345778899999999998887766654
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.1e-09 Score=106.79 Aligned_cols=213 Identities=17% Similarity=0.144 Sum_probs=119.8
Q ss_pred cCCcccEEEecCCCCcccCh--hcccCCCCCEEecCCCcCccccC-hhhhcCCCCcceeeccccccceeecccccccCcc
Q 043214 514 ELKTLEILSFQGSNIEEFPR--EIGQLTRLRLLNLAYCNLLKVIP-SNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKA 590 (793)
Q Consensus 514 ~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 590 (793)
++.+|+...+.++.+...+. ....|++++.|+++.|-+..-.| ..++..|++|+.|+++.|.+......
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-------- 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-------- 190 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--------
Confidence 46666777776666665543 45566667777766653322111 11244566666666666654322110
Q ss_pred cHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEE
Q 043214 591 SLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEEL 670 (793)
Q Consensus 591 ~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L 670 (793)
..-..+++|+.|.++.|++.. .+ .......+|+|..|+|.+|........-...+..|+.|
T Consensus 191 --~~~~~l~~lK~L~l~~CGls~-k~----------------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 191 --NTTLLLSHLKQLVLNSCGLSW-KD----------------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred --cchhhhhhhheEEeccCCCCH-HH----------------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 000134445555555444431 00 00013457777888887764222211112335789999
Q ss_pred EeccccCccccccccccCCCCCCCceEeecCCCccee--ccccCccCCccCcccceeecccccccccccccccccccCCC
Q 043214 671 YLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYV--IDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCK 748 (793)
Q Consensus 671 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 748 (793)
+|+++.... ++.....+.||.|..|+++.|. +..+ ++.........||+|+.|++.. +++.+|+. .-....+++
T Consensus 252 dLs~N~li~-~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~s-l~~l~~l~n 327 (505)
T KOG3207|consen 252 DLSNNNLID-FDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRS-LNHLRTLEN 327 (505)
T ss_pred cccCCcccc-cccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeeccc-Cccccccc-cchhhccch
Confidence 999987664 3322234789999999998874 2222 2222223456899999999998 77877753 234456778
Q ss_pred CCeeeeccC
Q 043214 749 LTTLKVKSC 757 (793)
Q Consensus 749 L~~L~l~~C 757 (793)
|+.|.+.+.
T Consensus 328 lk~l~~~~n 336 (505)
T KOG3207|consen 328 LKHLRITLN 336 (505)
T ss_pred hhhhhcccc
Confidence 888876544
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1.6e-09 Score=109.85 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=86.2
Q ss_pred ccCCceEEEeecCCc-ccchh-hHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCC
Q 043214 639 QLQNSRILKLKLNNS-TWLKD-DVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPR 716 (793)
Q Consensus 639 ~~~~L~~L~l~~~~~-~~~p~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 716 (793)
.+..|+.|..++... ...+- .+....++|+.|.+..|+..++..-.....+.+.|+.+++..|.... +....-..
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~---d~tL~sls 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT---DGTLASLS 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh---hhhHhhhc
Confidence 344555555544322 12222 23344577888888887765554332233567788888887775432 11111134
Q ss_pred ccCcccceeecccccccccccc--cccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccccchh
Q 043214 717 DAFRALESLSLSNLINLEKICH--GKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACKNMK 787 (793)
Q Consensus 717 ~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 787 (793)
..+|.|++|.+++|..+++-.. ......++..|+.+.+++||.+++- ....+..+++|+.+++.+|..+.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhh
Confidence 4677888888888776655421 1222356777888888888877764 33455677888888888887664
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=8.7e-07 Score=108.31 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=137.0
Q ss_pred cccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh---ce------------------ec---ccc--
Q 043214 124 AFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK---IS------------------FL---MRS-- 177 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---fq------------------~~---~~~-- 177 (793)
.++-|..-.+.+-+ ....+++.|.|++|.||||++....+.... +. +. ...
T Consensus 15 ~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~ 91 (903)
T PRK04841 15 NTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQATNGHCS 91 (903)
T ss_pred ccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccc
Confidence 34455543333321 245789999999999999999998764322 10 10 000
Q ss_pred ---------ccCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccC--cc-hhcCCCCCCCCCcEEEEeecCCCCCC-----
Q 043214 178 ---------CLQSESRRARRLCERLKK-EKKILVILDNIWASLD--FE-KVGIPFGDNHKGCKVLMTARNPDISG----- 239 (793)
Q Consensus 178 ---------~~~~~~~~~~~l~~~l~~-~kr~LlVLDdv~~~~~--~~-~l~~~~~~~~~gs~IivTTR~~~~~~----- 239 (793)
...........+...+.. +.+++|||||+...+. .. .+..-+....++.++|||||......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~ 171 (903)
T PRK04841 92 KSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLR 171 (903)
T ss_pred hhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHH
Confidence 001111223334444433 5789999999976532 12 22111222345678889999853110
Q ss_pred --C----------CCCChh-------------hHHHHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHHHcCCCCCC
Q 043214 240 --D----------YAENED-------------LQSIAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQELRRPSGRS 294 (793)
Q Consensus 240 --~----------~~~~~~-------------~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~l~~~~~~~ 294 (793)
+ .....+ -.+...++.+.|+|.|+++..++..+...... -......+...
T Consensus 172 ~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~---- 246 (903)
T PRK04841 172 VRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGI---- 246 (903)
T ss_pred hcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCC----
Confidence 0 001111 12345679999999999999988777543210 00111111000
Q ss_pred CCCCchhhhhhHHH-HhhcCCchhhHHHHHHhccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHcc
Q 043214 295 FTGVPAEAYSTIEL-SYNHLEGEELKSTFLLCSLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKTSC 373 (793)
Q Consensus 295 ~~~~~~~i~~~l~~-sy~~L~~~~lk~cfl~~s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~~s 373 (793)
....+...+.- .|..||++ .+..++..|+++. ++.+.+- .+... . + ....+++|...+
T Consensus 247 ---~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~---~~~~l~~------~l~~~-~---~----~~~~L~~l~~~~ 305 (903)
T PRK04841 247 ---NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRS---MNDALIV------RVTGE-E---N----GQMRLEELERQG 305 (903)
T ss_pred ---CchhHHHHHHHHHHhcCCHH-HHHHHHHhccccc---CCHHHHH------HHcCC-C---c----HHHHHHHHHHCC
Confidence 02334444333 37899998 8999999999873 3433221 11111 1 1 134678888888
Q ss_pred cccc-C-CCCcceehhHHHHHHHHHHH
Q 043214 374 LLLD-G-HTSEEFSMHDVVRDVAISIA 398 (793)
Q Consensus 374 ll~~-~-~~~~~~~mhdlv~~l~~~~~ 398 (793)
++.. . +....|.+|++++++.....
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 8653 2 23457889999999987654
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=4.2e-09 Score=106.84 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=80.2
Q ss_pred hhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCcc--CCccCcccceeecccccccccccccc
Q 043214 663 QMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHV--PRDAFRALESLSLSNLINLEKICHGK 740 (793)
Q Consensus 663 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~ 740 (793)
..+.|+.+.+..|....+..-.-...++|.|+.|.+++|..+..- +.... ...+...|+.|.+.+|+.+++-. .
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~--L 419 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITDAT--L 419 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh--hhhhhhhccccccccceeeecCCCCchHHH--H
Confidence 356788888877766554311112257899999999988765432 11111 33566789999999999887642 2
Q ss_pred cccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEe
Q 043214 741 LKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEV 780 (793)
Q Consensus 741 ~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i 780 (793)
.....+++|+.+++.+|..++.-+...+.+++|+++....
T Consensus 420 e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 2345688999999999999998888888889999887654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=2.2e-08 Score=97.02 Aligned_cols=125 Identities=24% Similarity=0.316 Sum_probs=76.3
Q ss_pred ccCCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEc
Q 043214 423 KRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCL 501 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 501 (793)
.-++.+++++|.+..+...+ -.|++|.|+++.|.+. .+.. +..+.+|..|||++|.+..+-..-.+|-|.+.|.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~--~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR--TVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee--eehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 44566677777666665555 4566666666666554 2322 35566666666666666555444445566666666
Q ss_pred CCcccCCCcccccCCcccEEEecCCCCccc--ChhcccCCCCCEEecCCCcC
Q 043214 502 DYGVFGDVSIIGELKTLEILSFQGSNIEEF--PREIGQLTRLRLLNLAYCNL 551 (793)
Q Consensus 502 ~~~~~~~~~~i~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~ 551 (793)
..|.+....+++++.+|..||+++|+|..+ -.+|++|+.|.++.+.+|..
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 666666666666666666666666666644 23466666666666666543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.6e-07 Score=102.69 Aligned_cols=155 Identities=26% Similarity=0.404 Sum_probs=72.0
Q ss_pred CCccEEEccccCccccccChhhhcCCC-cceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEE
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMT-ELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILS 522 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~ 522 (793)
+.+..|.+.++... .+++.. ..+. +|+.|+++++.+..+|..++.+++|+.|++++|++.. +...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n~i~--~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT--DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc--cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 44444554444443 344322 2232 4555555555555555445555555555555555555 33333555555555
Q ss_pred ecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 523 FQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 523 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
++++++..+|..+..+..|+.|.+++|..... +.. ++.++++..+.+..+.+... ...++.+++++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~-~~~~~~l~~l~l~~n~~~~~------------~~~~~~l~~l~ 258 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIEL-LSS-LSNLKNLSGLELSNNKLEDL------------PESIGNLSNLE 258 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceec-chh-hhhcccccccccCCceeeec------------cchhccccccc
Confidence 55555555555444444455555554432222 211 44444444444433332210 13344555555
Q ss_pred EEEEEeccCCccCc
Q 043214 603 NLEIQIQDANVLPK 616 (793)
Q Consensus 603 ~L~i~~~~~~~~~~ 616 (793)
.|++++|.+..++.
T Consensus 259 ~L~~s~n~i~~i~~ 272 (394)
T COG4886 259 TLDLSNNQISSISS 272 (394)
T ss_pred eecccccccccccc
Confidence 55555555554443
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.7e-07 Score=102.49 Aligned_cols=177 Identities=24% Similarity=0.307 Sum_probs=147.0
Q ss_pred ccCCeEEecCCCcccccccCCCC--CccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEE
Q 043214 423 KRCPAISLHNCKIDELLEGLECP--QLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLC 500 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 500 (793)
..+..+++.++.+..++...... +|+.|++..+... .+|.. ...++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh--hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 56888999999999998887554 8999999999876 66544 3889999999999999999999888999999999
Q ss_pred cCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccccee
Q 043214 501 LDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWE 579 (793)
Q Consensus 501 L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 579 (793)
++++.+.. |..+..+.+|++|.++++.+...|..+.++.++..+.+.++.. ..++.. ++.+++|+.|++.+|.+...
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~-~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPES-IGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccch-hccccccceecccccccccc
Confidence 99999999 5666778889999999998778888899999999999777654 333444 78999999999998877422
Q ss_pred ecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcc
Q 043214 580 IEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKG 617 (793)
Q Consensus 580 ~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~ 617 (793)
..++.+.+++.|+++++.+...+..
T Consensus 271 -------------~~~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 271 -------------SSLGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -------------ccccccCccCEEeccCccccccchh
Confidence 2378889999999998877655443
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.5e-08 Score=100.06 Aligned_cols=179 Identities=22% Similarity=0.267 Sum_probs=79.3
Q ss_pred hccCCeEEecCCCccccccc---C-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC--CCChhhhcccC
Q 043214 422 LKRCPAISLHNCKIDELLEG---L-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP--SLPSSLCLLSN 495 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~~---~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~i~~l~~ 495 (793)
..+++.|+++.|-+..+... . ++|+|+.|+++.|.+.. ...+..-..+++|+.|.++.|++. .+-.....+++
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 34455555555444222211 1 45555555555554332 111111123455555555555554 22222334455
Q ss_pred CcEEEcCCcc-cCC-CcccccCCcccEEEecCCCCcccC--hhcccCCCCCEEecCCCcCcc-ccChh----hhcCCCCc
Q 043214 496 LQTLCLDYGV-FGD-VSIIGELKTLEILSFQGSNIEEFP--REIGQLTRLRLLNLAYCNLLK-VIPSN----VLSSLSRL 566 (793)
Q Consensus 496 L~~L~L~~~~-~~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~-~~p~~----~i~~l~~L 566 (793)
|..|+|.+|. +.. -.....+..|+.|||++|++..++ ..++.|+.|+.|+++.|.... .+|+. ....+++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 5555555553 111 222333455566666665555444 235555666666555543321 11110 01344555
Q ss_pred ceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccC
Q 043214 567 EELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDA 611 (793)
Q Consensus 567 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~ 611 (793)
+.|++..|.+.. ...+..+..+++|+.|.+.++.+
T Consensus 304 ~~L~i~~N~I~~----------w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 304 EYLNISENNIRD----------WRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred eeeecccCcccc----------ccccchhhccchhhhhhcccccc
Confidence 556555555421 11234445555555555555444
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=6.2e-08 Score=96.43 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=46.3
Q ss_pred hcCCcEEEeccccCccc----cccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccc--
Q 043214 664 MKGIEELYLDEMRGVKN----IVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKIC-- 737 (793)
Q Consensus 664 l~~L~~L~L~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-- 737 (793)
+++|+.|+|.+|..... +...+ ..+|+|+.|++.+|.--..-.......-...+|+|++|.+.++ .++.=.
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~ 288 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAAL 288 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHH
Confidence 56666666666543322 12222 4567777777777742110000000002234778888887774 332210
Q ss_pred ccccccccCCCCCeeeeccCC
Q 043214 738 HGKLKAESFCKLTTLKVKSCD 758 (793)
Q Consensus 738 ~~~~~~~~~~~L~~L~l~~C~ 758 (793)
....+....|.|++|+|++|.
T Consensus 289 ~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHhcchhhHHhcCCccc
Confidence 012234457888888888873
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9.9e-09 Score=99.44 Aligned_cols=182 Identities=16% Similarity=0.069 Sum_probs=83.5
Q ss_pred cccEEEecCCCCc--ccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHH
Q 043214 517 TLEILSFQGSNIE--EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHE 594 (793)
Q Consensus 517 ~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 594 (793)
.||+||++...|+ .+..-+..+.+|+.|.+.++.....+-.. +.+-.+|+.|+++.|.--.. ...---
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~---------n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE---------NALQLL 255 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch---------hHHHHH
Confidence 3666666666555 33333455566666666665444443333 44555566666555431100 001112
Q ss_pred hcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccc---hhhHHHhhcCCcEEE
Q 043214 595 LKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWL---KDDVFMQMKGIEELY 671 (793)
Q Consensus 595 l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~---p~~~~~~l~~L~~L~ 671 (793)
+.+++.|..|+++++....-.-... ...--++|..|+++|+...-. -..+...+++|.+|+
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~----------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVA----------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHH----------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 3445555555555554321000000 011123445555555321111 112233456677777
Q ss_pred eccccCcccc-ccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccc
Q 043214 672 LDEMRGVKNI-VYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNL 730 (793)
Q Consensus 672 L~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 730 (793)
|++|..+++. ...+ .+|+.|++|.++.|..+- |.. .......|+|.+|++.+|
T Consensus 320 LSD~v~l~~~~~~~~--~kf~~L~~lSlsRCY~i~--p~~--~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEF--FKFNYLQHLSLSRCYDII--PET--LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHH--HhcchheeeehhhhcCCC--hHH--eeeeccCcceEEEEeccc
Confidence 7666655542 2222 456666666666665431 111 113445566666666655
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=5.9e-07 Score=103.07 Aligned_cols=101 Identities=25% Similarity=0.381 Sum_probs=60.6
Q ss_pred ceEEEecCCcCC-CCChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCCCCc-ccChhcccCCCCCEEecCC
Q 043214 473 LRVLDFVAMHLP-SLPSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIE-EFPREIGQLTRLRLLNLAY 548 (793)
Q Consensus 473 Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~ 548 (793)
++.|+|+++.+. .+|..++.+++|++|+|++|.+.. |..++.+++|++|++++|++. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666665 556666666666666666666554 445666666666666666655 5566666666666666666
Q ss_pred CcCccccChhhhcC-CCCcceeecccc
Q 043214 549 CNLLKVIPSNVLSS-LSRLEELYMGYT 574 (793)
Q Consensus 549 ~~~~~~~p~~~i~~-l~~L~~L~l~~~ 574 (793)
|...+.+|.. ++. +.++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 6666666654 332 234445555544
No 42
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.32 E-value=1.1e-05 Score=83.24 Aligned_cols=131 Identities=16% Similarity=0.219 Sum_probs=74.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhhh--c---e------------------eccccccCChHHHHHHHHH----HHh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAKK--I---S------------------FLMRSCLQSESRRARRLCE----RLK 194 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--f---q------------------~~~~~~~~~~~~~~~~l~~----~l~ 194 (793)
....++.|+|.+|+||||+++.+++.... + . ++..............+.+ ...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999999987542 1 0 1111111222222333333 333
Q ss_pred cCCeEEEEEeCCCccc--CcchhcC---CCCCCCCCcEEEEeecCC--------C-------------------------
Q 043214 195 KEKKILVILDNIWASL--DFEKVGI---PFGDNHKGCKVLMTARNP--------D------------------------- 236 (793)
Q Consensus 195 ~~kr~LlVLDdv~~~~--~~~~l~~---~~~~~~~gs~IivTTR~~--------~------------------------- 236 (793)
.+++++||+||++... .++.+.. ...+......|++|.... .
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 5688999999999863 3444422 111122233445554311 0
Q ss_pred ------CCCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHHH
Q 043214 237 ------ISGDYAENEDLQSIAKDVAKACGCLPIAIVTIARAL 272 (793)
Q Consensus 237 ------~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 272 (793)
..+......--.+..+.|++.++|.|..|..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 000000111124567789999999999998888776
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.7e-06 Score=97.61 Aligned_cols=109 Identities=24% Similarity=0.408 Sum_probs=93.2
Q ss_pred CccEEEccccCccccccChhhhcCCCcceEEEecCCcCC-CCChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEE
Q 043214 446 QLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP-SLPSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILS 522 (793)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~ 522 (793)
.++.|.+.++.+.. .+|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..++++++|++|+
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccc-cCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 47788888888765 777764 89999999999999998 899999999999999999999886 78899999999999
Q ss_pred ecCCCCc-ccChhcccC-CCCCEEecCCCcCccccC
Q 043214 523 FQGSNIE-EFPREIGQL-TRLRLLNLAYCNLLKVIP 556 (793)
Q Consensus 523 l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~~~p 556 (793)
+++|++. .+|..++.+ .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999888 889888764 577889988876555444
No 44
>PF13173 AAA_14: AAA domain
Probab=98.23 E-value=1.1e-06 Score=78.82 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=61.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh--h--c--eeccccccC-ChHHHHHHHHHHHhcCCeEEEEEeCCCcccCcchhc
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK--K--I--SFLMRSCLQ-SESRRARRLCERLKKEKKILVILDNIWASLDFEKVG 216 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~--f--q~~~~~~~~-~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~~~~l~ 216 (793)
-+++.|.|..|+|||||+++++++.. . + .+....... ...+..+.+.+.... ++.+|+||+|....+|....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKP-GKKYIFIDEIQYLPDWEDAL 80 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhcc-CCcEEEEehhhhhccHHHHH
Confidence 36899999999999999999998765 2 1 111110000 000122333333333 56889999999999998876
Q ss_pred CCCCCCCCCcEEEEeecCCC
Q 043214 217 IPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 217 ~~~~~~~~gs~IivTTR~~~ 236 (793)
..+.+..+..+|++|+.+..
T Consensus 81 k~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 81 KFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred HHHHHhccCceEEEEccchH
Confidence 66666666789999998553
No 45
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.23 E-value=0.00012 Score=79.98 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=60.3
Q ss_pred cccccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhhhh----c---e------------------
Q 043214 122 YEAFESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----I---S------------------ 172 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----f---q------------------ 172 (793)
+..+.||+++++++...+. ......+.|+|.+|+|||++++.++++... + .
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3568899999999988874 334566789999999999999999987632 1 0
Q ss_pred -ecc-c--cccCChHHHHHHHHHHHhc-CCeEEEEEeCCCcc
Q 043214 173 -FLM-R--SCLQSESRRARRLCERLKK-EKKILVILDNIWAS 209 (793)
Q Consensus 173 -~~~-~--~~~~~~~~~~~~l~~~l~~-~kr~LlVLDdv~~~ 209 (793)
+.. . ....+..+....+.+.+.. ++.++||||+++..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 110 0 0111234445566666653 45689999999875
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=5.8e-08 Score=94.24 Aligned_cols=173 Identities=23% Similarity=0.229 Sum_probs=122.4
Q ss_pred ccCCeEEecCCCcc--cccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCc-CC--CCChhhhcccCC
Q 043214 423 KRCPAISLHNCKID--ELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMH-LP--SLPSSLCLLSNL 496 (793)
Q Consensus 423 ~~~~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~--~lp~~i~~l~~L 496 (793)
.++++++++...+. .+.... .|.+|+.|.+.+..... .+...+ .+-.+|+.|++++++ ++ .+.--+.+|+.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHH-hccccceeeccccccccchhHHHHHHHhhhhH
Confidence 35788888877662 333322 78999999999887664 555554 778899999999985 44 233456789999
Q ss_pred cEEEcCCcccCCC------cccccCCcccEEEecCC--CCc--ccChhcccCCCCCEEecCCCcCccccChhhhcCCCCc
Q 043214 497 QTLCLDYGVFGDV------SIIGELKTLEILSFQGS--NIE--EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRL 566 (793)
Q Consensus 497 ~~L~L~~~~~~~~------~~i~~l~~L~~L~l~~~--~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L 566 (793)
..|+|++|.+..+ ..++ .+|..|+++|| ++. .+..-..++++|.+|++++|..++.--...+.+++.|
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 9999999986552 2333 57888999987 232 3333356789999999999876554222236789999
Q ss_pred ceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEec
Q 043214 567 EELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQ 609 (793)
Q Consensus 567 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~ 609 (793)
++|.++.|... ....+-++...+.|.+|++.++
T Consensus 341 ~~lSlsRCY~i----------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYDI----------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcCC----------ChHHeeeeccCcceEEEEeccc
Confidence 99999988642 1234557888888999988765
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=2.2e-06 Score=65.44 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.8
Q ss_pred ceEEEecCCcCC
Q 043214 473 LRVLDFVAMHLP 484 (793)
Q Consensus 473 Lr~L~l~~~~~~ 484 (793)
|++|++++|.+.
T Consensus 3 L~~L~l~~n~l~ 14 (61)
T PF13855_consen 3 LESLDLSNNKLT 14 (61)
T ss_dssp ESEEEETSSTES
T ss_pred CcEEECCCCCCC
Confidence 333444444333
No 48
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.13 E-value=6.2e-06 Score=83.03 Aligned_cols=45 Identities=33% Similarity=0.377 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 125 FESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
|+||++++++|.+++..+..+.+.|+|..|+|||+|++.+.+..+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 689999999999988876678999999999999999999988763
No 49
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.12 E-value=1.1e-05 Score=74.48 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=65.4
Q ss_pred cccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-----ceeccc--cccCChHHHH-----HHHHHHH
Q 043214 126 ESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-----ISFLMR--SCLQSESRRA-----RRLCERL 193 (793)
Q Consensus 126 ~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----fq~~~~--~~~~~~~~~~-----~~l~~~l 193 (793)
.|++..++.+...+.......+.|+|.+|+||||+|+.+++.... +-+... .......... .......
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELA 80 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhh
Confidence 367888889988887666778999999999999999999987632 111100 0000000000 1111111
Q ss_pred hcCCeEEEEEeCCCcc-----cCcchhcCCCCC---CCCCcEEEEeecCCC
Q 043214 194 KKEKKILVILDNIWAS-----LDFEKVGIPFGD---NHKGCKVLMTARNPD 236 (793)
Q Consensus 194 ~~~kr~LlVLDdv~~~-----~~~~~l~~~~~~---~~~gs~IivTTR~~~ 236 (793)
...+..+||+||++.. ..+..+...+.. ...+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 2236789999999964 122222222211 136788999988553
No 50
>PF05729 NACHT: NACHT domain
Probab=98.11 E-value=4.6e-06 Score=78.90 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=53.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-------ce---------eccccccCCh------------HHHHHHHHHHHhcC
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-------IS---------FLMRSCLQSE------------SRRARRLCERLKKE 196 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-------fq---------~~~~~~~~~~------------~~~~~~l~~~l~~~ 196 (793)
+++.|+|.+|+||||+++.++..... +. .......... ......+.......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 58899999999999999999876544 11 0000000000 00111223344456
Q ss_pred CeEEEEEeCCCcccC---------cch-hcCCCCC-CCCCcEEEEeecCC
Q 043214 197 KKILVILDNIWASLD---------FEK-VGIPFGD-NHKGCKVLMTARNP 235 (793)
Q Consensus 197 kr~LlVLDdv~~~~~---------~~~-l~~~~~~-~~~gs~IivTTR~~ 235 (793)
+++++|||++++... +.. +..-++. .-++.+||||||..
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 899999999988633 111 2111222 34689999999954
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.3e-06 Score=65.38 Aligned_cols=60 Identities=30% Similarity=0.525 Sum_probs=49.2
Q ss_pred CCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCccc
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVF 506 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~ 506 (793)
|+|+.|.+.++.+. .+|...|.++++|++|++++|.+..+| ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 56788888888776 888888899999999999999988765 4678888888888888753
No 52
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.08 E-value=3.7e-05 Score=86.01 Aligned_cols=243 Identities=19% Similarity=0.214 Sum_probs=128.0
Q ss_pred HHHHHHhCC-CCceEEEEEecCCChHHHHHHHHHhhhhh------------------c--------e-ecc---------
Q 043214 133 NDVLNALNN-PNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------------I--------S-FLM--------- 175 (793)
Q Consensus 133 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------------f--------q-~~~--------- 175 (793)
.++++.|.. .+.+.+.|.-++|.|||||+.+....... | | ...
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHH
Confidence 456666663 47899999999999999999998652221 2 0 000
Q ss_pred --ccccCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccC------cchhcCCCCCCCCCcEEEEeecCCCCCCCC--CCC
Q 043214 176 --RSCLQSESRRARRLCERLKK-EKKILVILDNIWASLD------FEKVGIPFGDNHKGCKVLMTARNPDISGDY--AEN 244 (793)
Q Consensus 176 --~~~~~~~~~~~~~l~~~l~~-~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gs~IivTTR~~~~~~~~--~~~ 244 (793)
+....+.......+...+.+ .+.+.+||||..-..+ .+-+... ..++-..|||||++...+-. ...
T Consensus 105 ~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEeccCCCCcccceeeh
Confidence 01111222334444444432 3578999999754421 2223333 34577899999998721100 000
Q ss_pred hhhH-----------HHHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHH--HcCCCCCC-------CCCCchhhhh
Q 043214 245 EDLQ-----------SIAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQE--LRRPSGRS-------FTGVPAEAYS 304 (793)
Q Consensus 245 ~~~~-----------~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~--l~~~~~~~-------~~~~~~~i~~ 304 (793)
+.+- +=+.+...-.+|+|+---.+..+... .+-|-..++- |....... ..|..+-+..
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~--teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~d 259 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDR--TEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSD 259 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhh--cccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHH
Confidence 1111 11233344444455444333333221 1223333221 11100000 0011111111
Q ss_pred -hHHHHhhcCCchhhHHHHHHhccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHcccccc--CCCC
Q 043214 305 -TIELSYNHLEGEELKSTFLLCSLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKTSCLLLD--GHTS 381 (793)
Q Consensus 305 -~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~~sll~~--~~~~ 381 (793)
...--++.||++ ++...+-||+++.- -+.|+..-.. ++.+.+.+++|..++++.. .+..
T Consensus 260 YL~eeVld~Lp~~-l~~FLl~~svl~~f----~~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~~ 321 (894)
T COG2909 260 YLVEEVLDRLPPE-LRDFLLQTSVLSRF----NDELCNALTG-------------EENGQAMLEELERRGLFLQRLDDEG 321 (894)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHhHHHh----hHHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCCC
Confidence 122345789998 99999999999871 1233322111 1224457899999998862 3567
Q ss_pred cceehhHHHHHHHHHHH
Q 043214 382 EEFSMHDVVRDVAISIA 398 (793)
Q Consensus 382 ~~~~mhdlv~~l~~~~~ 398 (793)
..|+.|.++.++.+.--
T Consensus 322 ~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 322 QWFRYHHLFAEFLRQRL 338 (894)
T ss_pred ceeehhHHHHHHHHhhh
Confidence 78999999999887543
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.08 E-value=1.6e-05 Score=84.19 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=40.9
Q ss_pred CcccccccHHHHHHHHHHhC-----CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 121 CYEAFESRMSTLNDVLNALN-----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+..|+|++..++.+...+. ......+.|+|++|+||||||+.+.+....
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 35678999999988877664 234567889999999999999999998655
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=2e-06 Score=98.28 Aligned_cols=148 Identities=18% Similarity=0.257 Sum_probs=104.6
Q ss_pred hccCCeEEecCCCc--ccccccC--CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCc
Q 043214 422 LKRCPAISLHNCKI--DELLEGL--ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQ 497 (793)
Q Consensus 422 ~~~~~~l~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 497 (793)
..++++|++++... ..++... .+|.|++|.+.+..+..+. ...++.++++|+.||+++++++.+ ..+++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 35677888877544 3333322 6899999999887665322 234567899999999999999887 7899999999
Q ss_pred EEEcCCcccCC---CcccccCCcccEEEecCCCCcccCh-------hcccCCCCCEEecCCCcCccccChhhhcCCCCcc
Q 043214 498 TLCLDYGVFGD---VSIIGELKTLEILSFQGSNIEEFPR-------EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLE 567 (793)
Q Consensus 498 ~L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~-------~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~ 567 (793)
.|.+++-.+.. +..+.+|++|++||++......-+. .-..||+|+.||.+++.....+-...+..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99998877665 5788899999999999864332221 1234889999998887655554444344444555
Q ss_pred eeec
Q 043214 568 ELYM 571 (793)
Q Consensus 568 ~L~l 571 (793)
.+..
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 5443
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.00 E-value=3.4e-05 Score=79.16 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=75.2
Q ss_pred HHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-ce-ecccccc-CChHHHHHHHHHHHhcCCeEEEEEeCCCcccC
Q 043214 135 VLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-IS-FLMRSCL-QSESRRARRLCERLKKEKKILVILDNIWASLD 211 (793)
Q Consensus 135 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq-~~~~~~~-~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~ 211 (793)
|.+.+..+.+.-.-.||++|+||||||+.+...... |. ++-.... .+.....+.-++....|+|.+|++|.|..-..
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 334455677888889999999999999999987665 42 3222211 11222333333344446899999999976532
Q ss_pred --cchhcCCCCCCCCCcEEEEeecCCC--C-------------CCCCCCChhhHHHHHH-HHHHhCCCc
Q 043214 212 --FEKVGIPFGDNHKGCKVLMTARNPD--I-------------SGDYAENEDLQSIAKD-VAKACGCLP 262 (793)
Q Consensus 212 --~~~l~~~~~~~~~gs~IivTTR~~~--~-------------~~~~~~~~~~~~~~~~-i~~~c~GlP 262 (793)
=+.+ +|.-.+|.-|+|-+..++ . .-..-...+++.+..+ +.....|++
T Consensus 119 ~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~ 184 (436)
T COG2256 119 AQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLG 184 (436)
T ss_pred hhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCC
Confidence 2222 334567877777544443 1 0112234455555555 677777877
No 56
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.00 E-value=0.00032 Score=73.68 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=41.0
Q ss_pred cccccccHHHHHHHHHHhC-----CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 122 YEAFESRMSTLNDVLNALN-----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+..|+|++..++.+..++. ......+.++|++|+|||+||+.+.+....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999888876 334567889999999999999999987654
No 57
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.99 E-value=0.0014 Score=70.98 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=39.7
Q ss_pred cccccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 122 YEAFESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+..++||++++++|..++. +.....+.|+|++|+|||++++.+++..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999876 3345679999999999999999998754
No 58
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.97 E-value=5.5e-05 Score=82.65 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=64.8
Q ss_pred cccccccHHHHHH---HHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecccccc-CChHHHHHHHHHHHhc
Q 043214 122 YEAFESRMSTLND---VLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMRSCL-QSESRRARRLCERLKK 195 (793)
Q Consensus 122 ~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~~~~-~~~~~~~~~l~~~l~~ 195 (793)
...++|++..+.. +.+++.......+.++|.+|+||||||+.+++.... | .+...... .......+........
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~ 90 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSA 90 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhc
Confidence 3457788777655 777777777778899999999999999999987654 3 12211111 1111222222222233
Q ss_pred CCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEe
Q 043214 196 EKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMT 231 (793)
Q Consensus 196 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivT 231 (793)
+++.+|++|+++... +.+.+...+ ..|..+++.
T Consensus 91 g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~ 125 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIG 125 (413)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEE
Confidence 477899999998763 344443333 235555553
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=3.8e-05 Score=80.83 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 515 LKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 515 l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
+.++..|++++|.++.+|. -..+|++|.+++|..+..+|.. + ..+|++|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 3445555555555555541 1224555555555555544432 2 234555555544
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=3.5e-07 Score=99.11 Aligned_cols=176 Identities=23% Similarity=0.244 Sum_probs=107.5
Q ss_pred hhhccCCeEEecCCCcccccccCC-CCCccEEEccccCccc--------cccChhhhcCCCcceEEEecCCcCCCCChhh
Q 043214 420 EALKRCPAISLHNCKIDELLEGLE-CPQLKLLHMATEDLSV--------QQIPNNFFIGMTELRVLDFVAMHLPSLPSSL 490 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i 490 (793)
-....+|+|.+.+|++........ ...|+.|+....--.. +.+.++. .-..|.+.+.++|.+..+-.++
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHH
Confidence 345788999999988865433332 2345555543221000 0111110 1234566677777777666777
Q ss_pred hcccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCccee
Q 043214 491 CLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEEL 569 (793)
Q Consensus 491 ~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L 569 (793)
.-++.|+.|+|+.|++.....+..+++|++|||++|.+..+|.- ...+ +|+.|++++|.. ..+-. +.+|++|+.|
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL-TTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH-Hhhhh--HHhhhhhhcc
Confidence 77777888888888777766777777888888888777777652 2222 377777777544 33332 6677777777
Q ss_pred eccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccC
Q 043214 570 YMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDA 611 (793)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~ 611 (793)
++++|.+... ..+..|..|..|+.|.+.+|.+
T Consensus 260 DlsyNll~~h----------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLSEH----------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhhcc----------hhhhHHHHHHHHHHHhhcCCcc
Confidence 7777765432 2345566666777777776654
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=6.2e-06 Score=82.50 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=7.0
Q ss_pred CCCCCceEeecCC
Q 043214 690 FPKLKHPQIQNNP 702 (793)
Q Consensus 690 l~~L~~L~l~~~~ 702 (793)
.|+|+.|.+.+|.
T Consensus 269 ~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 269 APSLEVLELAGNE 281 (382)
T ss_pred CCCCceeccCcch
Confidence 5555555555553
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=2.3e-05 Score=54.76 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=19.1
Q ss_pred cceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC
Q 043214 472 ELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD 508 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 508 (793)
+|++|++++|.++.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555555555555555555554443
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=97.79 E-value=0.00025 Score=74.68 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=66.0
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--cee-ccccccCChHHHHHHHHHHH------
Q 043214 123 EAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISF-LMRSCLQSESRRARRLCERL------ 193 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~-~~~~~~~~~~~~~~~l~~~l------ 193 (793)
..++|.++.++.|..++..+...-+-++|.+|+||||+|+.+.+..-. |.. ...... +.......+++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~-sd~~~~~~vr~~i~~~~~~ 91 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA-SDDRGIDVVRNKIKMFAQK 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc-cccccHHHHHHHHHHHHhc
Confidence 456788888888888777777777889999999999999999887522 210 000110 0011111122211
Q ss_pred ----hcCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCC
Q 043214 194 ----KKEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 194 ----~~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
..++.-++|||++.... .-+.+...+....+.+++|++|...
T Consensus 92 ~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 92 KVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred cccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence 11345689999998763 2233333332234567788877544
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=8.7e-05 Score=78.18 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=40.6
Q ss_pred cCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcc-cCC-CcccccCCcccEEEecCC-CCcccChh
Q 043214 468 IGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGV-FGD-VSIIGELKTLEILSFQGS-NIEEFPRE 534 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~-~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~ 534 (793)
..++.++.|++++|.++.+|. -..+|+.|.+++|. +.. |..+ ..+|++|++++| .+..+|..
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 346777888888887777772 12358888887764 444 3333 257788888877 67677753
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=7.4e-06 Score=79.94 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=32.8
Q ss_pred hhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCc-cCCccCcccceeeccccccccc
Q 043214 663 QMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKH-VPRDAFRALESLSLSNLINLEK 735 (793)
Q Consensus 663 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~ 735 (793)
.+||+..+.+..|..-+ ...+-....+|.+-.|++..+. + +++.. ....+||+|..|.+.+.|-+..
T Consensus 197 ~Fpnv~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~~~-i----dswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGANN-I----DSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccchheeeecCcccc-hhhcccCCCCCcchhhhhcccc-c----ccHHHHHHHcCCchhheeeccCCccccc
Confidence 35666666666554321 1111112445666666665543 1 22221 2455677777777666554433
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=3.2e-06 Score=92.71 Aligned_cols=128 Identities=27% Similarity=0.414 Sum_probs=93.7
Q ss_pred CCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEe
Q 043214 444 CPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSF 523 (793)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l 523 (793)
+..++.+.+..+.+. .+-. .+..++.|..|++.+|.+..+...+..+.+|++|++++|.+..+..+..+..|+.|++
T Consensus 71 l~~l~~l~l~~n~i~--~~~~-~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA--KILN-HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhh--hhhc-ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 444555555444332 2112 1367888999999999888777667888999999999999888888888888999999
Q ss_pred cCCCCcccChhcccCCCCCEEecCCCcCccccCh-hhhcCCCCcceeeccccccc
Q 043214 524 QGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPS-NVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 524 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~ 577 (793)
.+|.|..++ ++..+++|+.+++++|.... +.. . ...+.+|+.+.+.+|.+.
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~-ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVD-IENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhh-hhhhh-hhhccchHHHhccCCchh
Confidence 999888775 36668889999998876643 333 1 357788888888877653
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.71 E-value=7e-06 Score=90.05 Aligned_cols=167 Identities=22% Similarity=0.265 Sum_probs=111.3
Q ss_pred EecCCCccc-ccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccC
Q 043214 429 SLHNCKIDE-LLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFG 507 (793)
Q Consensus 429 ~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 507 (793)
++..+.+.. ......+.++..|.+..+.+. .+... +..+.+|++|++++|.|..+. .+..+..|+.|++.+|.+.
T Consensus 78 ~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 78 NLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ccchhhhhhhhcccccccceeeeeccccchh--hcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcch
Confidence 344444433 222346788888888888765 44432 367889999999999888765 3667777999999999988
Q ss_pred CCcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccc
Q 043214 508 DVSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNV 586 (793)
Q Consensus 508 ~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 586 (793)
.+..+..+.+|+.+++++|.+..+... ...+.+|+.+.+.+|.....-. +..+..+..+++..|.+...
T Consensus 154 ~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~l~~n~i~~~------- 223 (414)
T KOG0531|consen 154 DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG---LDLLKKLVLLSLLDNKISKL------- 223 (414)
T ss_pred hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc---hHHHHHHHHhhcccccceec-------
Confidence 888888899999999999988877654 5788888888888865533211 33444444445555544311
Q ss_pred cCcccHHHhcCCC--CCcEEEEEeccCCccC
Q 043214 587 RSKASLHELKQLS--YLTNLEIQIQDANVLP 615 (793)
Q Consensus 587 ~~~~~l~~l~~l~--~L~~L~i~~~~~~~~~ 615 (793)
..+..+. +|+.+++..+.+...+
T Consensus 224 ------~~l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 224 ------EGLNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred ------cCcccchhHHHHHHhcccCcccccc
Confidence 1222222 3777888877776553
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.69 E-value=1.5e-05 Score=76.83 Aligned_cols=136 Identities=21% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCcceEEEecCCcCC-----CCChhhhcccCCcEEEcCCcccCC------------CcccccCCcccEEEecCCCCc-c
Q 043214 469 GMTELRVLDFVAMHLP-----SLPSSLCLLSNLQTLCLDYGVFGD------------VSIIGELKTLEILSFQGSNIE-E 530 (793)
Q Consensus 469 ~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~------------~~~i~~l~~L~~L~l~~~~l~-~ 530 (793)
-+..+..++|+||.|. .+...|.+-.+|+..+++.-.... .+.+-++++|++.+++.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3666777777777765 244555566677777776543211 134556778888888887555 4
Q ss_pred cChh----cccCCCCCEEecCCCcCccccChhh-------------hcCCCCcceeeccccccceeecccccccCcccHH
Q 043214 531 FPRE----IGQLTRLRLLNLAYCNLLKVIPSNV-------------LSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLH 593 (793)
Q Consensus 531 lp~~----i~~L~~L~~L~l~~~~~~~~~p~~~-------------i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 593 (793)
.|.. |.+-+.|.||.+++|.. +.+..+- +.+-+.|++.....|.+... .......
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-------s~~~~a~ 179 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-------SKELSAA 179 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-------cHHHHHH
Confidence 4443 45567788888877643 2222110 23455666666666554211 1111223
Q ss_pred HhcCCCCCcEEEEEeccCC
Q 043214 594 ELKQLSYLTNLEIQIQDAN 612 (793)
Q Consensus 594 ~l~~l~~L~~L~i~~~~~~ 612 (793)
.|.+..+|+.+.|..|.+.
T Consensus 180 ~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 180 LLESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHHhhcCceeEEeeecCcC
Confidence 4455567777777777664
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=97.66 E-value=0.0014 Score=73.31 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=65.0
Q ss_pred cccccccHHHHHHHHHHhCC----CCceEEEEEecCCChHHHHHHHHHhhhhh--ceeccccccCChHHHHHHHHHHH--
Q 043214 122 YEAFESRMSTLNDVLNALNN----PNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRSCLQSESRRARRLCERL-- 193 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~~~~~~~~~~~~l~~~l-- 193 (793)
...++|++..++.+.+|+.. ...+.+-|+|.+|+||||+|+++++.... ..+... +... ......+....
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas-d~r~-~~~i~~~i~~~~~ 90 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS-DQRT-ADVIERVAGEAAT 90 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc-cccc-HHHHHHHHHHhhc
Confidence 34578999999999888762 22678999999999999999999987643 111110 0011 11111111111
Q ss_pred ----hcCCeEEEEEeCCCcccC------cchhcCCCCCCCCCcEEEEeecCC
Q 043214 194 ----KKEKKILVILDNIWASLD------FEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 194 ----~~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
.+.++-+||+|+++.... ++.+...+. ..+..||+|+.+.
T Consensus 91 ~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~ 140 (482)
T PRK04195 91 SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDP 140 (482)
T ss_pred cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCc
Confidence 112567999999987532 344433332 2334577776543
No 70
>PTZ00202 tuzin; Provisional
Probab=97.64 E-value=0.0013 Score=69.03 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=41.4
Q ss_pred CcccccccHHHHHHHHHHhCC---CCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 121 CYEAFESRMSTLNDVLNALNN---PNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+...|+||+.+...+...|.+ ...+++.|+|++|.|||||++.+......
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~ 312 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGM 312 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 356899999999999988862 23469999999999999999999876544
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.60 E-value=0.00072 Score=71.46 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=67.2
Q ss_pred cccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh-c-eeccccccCChHHHHHHHHHHHh----
Q 043214 122 YEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMRSCLQSESRRARRLCERLK---- 194 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~~~~~~~~~~~~~l~~~l~---- 194 (793)
...++|.+...+.+..++..+.. .++-++|.+|+||||+|+.+++.... | .+.... .........+.+...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~~~~i~~~l~~~~~~~~~ 97 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CRIDFVRNRLTRFASTVSL 97 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--ccHHHHHHHHHHHHHhhcc
Confidence 34578999999999998876554 56777999999999999999886533 2 121111 111111111222211
Q ss_pred cCCeEEEEEeCCCccc---CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 195 KEKKILVILDNIWASL---DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 195 ~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.+.+-+||+||+.... ..+.+...+.....++++|+||....
T Consensus 98 ~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 98 TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 1234578899997651 12223222333345778999987544
No 72
>PRK06893 DNA replication initiation factor; Validated
Probab=97.58 E-value=0.0002 Score=71.35 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=48.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh--ceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcc---cCcch-hcC
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRSCLQSESRRARRLCERLKKEKKILVILDNIWAS---LDFEK-VGI 217 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~---~~~~~-l~~ 217 (793)
.+.+.+||.+|+|||+||+++++.... .... -............+.+.+. +.-+|||||+|.. .+|+. +..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~~ 115 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAI-YIPLSKSQYFSPAVLENLE--QQDLVCLDDLQAVIGNEEWELAIFD 115 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE-EeeHHHhhhhhHHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHH
Confidence 357899999999999999999987532 0000 0000000111123333333 2348999999974 34542 222
Q ss_pred CCCC-CCCCcEEEEeecCC
Q 043214 218 PFGD-NHKGCKVLMTARNP 235 (793)
Q Consensus 218 ~~~~-~~~gs~IivTTR~~ 235 (793)
.+.. ...|+.|||+|.+.
T Consensus 116 l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 116 LFNRIKEQGKTLLLISADC 134 (229)
T ss_pred HHHHHHHcCCcEEEEeCCC
Confidence 2221 22466676665544
No 73
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=7.9e-05 Score=52.00 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=17.3
Q ss_pred cccEEEecCCCCcccChhcccCCCCCEEecCCCc
Q 043214 517 TLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCN 550 (793)
Q Consensus 517 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 550 (793)
+|++|++++|+|+.+|..+++|++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555555555555555555543
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.57 E-value=0.00071 Score=78.10 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=63.9
Q ss_pred cccccccHHHHH---HHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-ce-ecccccc-CChHHHHHHHHHHHh-
Q 043214 122 YEAFESRMSTLN---DVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-IS-FLMRSCL-QSESRRARRLCERLK- 194 (793)
Q Consensus 122 ~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq-~~~~~~~-~~~~~~~~~l~~~l~- 194 (793)
...|+|++..+. .+.+.+..+.+..+-++|++|+||||||+.+++.... |. +...... .+..+......+.+.
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~ 106 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLER 106 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhh
Confidence 445778877663 4556666677778899999999999999999987654 31 1111000 011111222222222
Q ss_pred cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeec
Q 043214 195 KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 195 ~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR 233 (793)
.+++.+||||||+.. .+.+.+...+ ..|+.+++++.
T Consensus 107 ~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aT 144 (725)
T PRK13341 107 HGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGAT 144 (725)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEec
Confidence 135679999999765 3445553322 34665665433
No 75
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.57 E-value=0.0009 Score=79.22 Aligned_cols=89 Identities=10% Similarity=0.121 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHccC-------ChHHHHHHHHHHcCCCCCCCCCCchhhhhhHHHHhhcCCchhh
Q 043214 246 DLQSIAKDVAKACGCLPIAIVTIARALRNK-------SVFEWKNALQELRRPSGRSFTGVPAEAYSTIELSYNHLEGEEL 318 (793)
Q Consensus 246 ~~~~~~~~i~~~c~GlPLai~~~g~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~l 318 (793)
...+....|+++..|.|+-+.-+-..+... +...|..-...+.... ..+.+...+..-.+.||.. -
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~------~~~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA------TTDAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch------hhHHHHHHHHHHHhcCCHH-H
Confidence 344567899999999999998888887642 4455554333322211 1233566688888999988 7
Q ss_pred HHHHHHhccccccccccHHHHHHHH
Q 043214 319 KSTFLLCSLMVHIQSATIQYLLSYG 343 (793)
Q Consensus 319 k~cfl~~s~fp~~~~~~~~~Li~~w 343 (793)
+...-..|++.. .|+.+.|-..+
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l~ 333 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHHH
Confidence 898889999887 77777776554
No 76
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.56 E-value=2.8e-06 Score=92.38 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=69.9
Q ss_pred ccCCeEEecCCCcccccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChh-hhcccCCcEEE
Q 043214 423 KRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSS-LCLLSNLQTLC 500 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~ 500 (793)
..+...++++|.+..+.... -++.+++|+++.|.+. ... .+..+++|+.|||++|.+..+|.- ...+ +|..|+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~--~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT--KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh--hhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 34555566666654444443 3566677777666554 222 346666777777777766665531 1222 266666
Q ss_pred cCCcccCCCcccccCCcccEEEecCCCCc---ccChhcccCCCCCEEecCCCc
Q 043214 501 LDYGVFGDVSIIGELKTLEILSFQGSNIE---EFPREIGQLTRLRLLNLAYCN 550 (793)
Q Consensus 501 L~~~~~~~~~~i~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~ 550 (793)
+++|-++...++.+|++|+.||+++|-+. +|- -++.|..|+.|.|.+|.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCc
Confidence 66666666666666666666666666443 221 24556666666666654
No 77
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=5.6e-05 Score=86.63 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=64.2
Q ss_pred CCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC--CCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEE
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP--SLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILS 522 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~ 522 (793)
.+|+.|++.|........|..+...+|.|+.|.+.+-.+. ..-.-..++++|+.||++++++..+.++++|+||++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 4677777766544333444555556777777777776553 22233345667777777777777777777777777777
Q ss_pred ecCCCCcccC--hhcccCCCCCEEecCCC
Q 043214 523 FQGSNIEEFP--REIGQLTRLRLLNLAYC 549 (793)
Q Consensus 523 l~~~~l~~lp--~~i~~L~~L~~L~l~~~ 549 (793)
+++=.+..-+ ..+.+|++|+.||++..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 6665544322 24556777777777654
No 78
>PRK08727 hypothetical protein; Validated
Probab=97.53 E-value=0.00062 Score=68.01 Aligned_cols=102 Identities=25% Similarity=0.247 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--cee-ccccccCChHHHHHHHHHHHhcCCeEEEEEeCCC
Q 043214 131 TLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISF-LMRSCLQSESRRARRLCERLKKEKKILVILDNIW 207 (793)
Q Consensus 131 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~-~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~ 207 (793)
.+..+.....+.....+.|+|..|+|||.||+++++.... ... .... ...........+.+. +--+||+||+.
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~~l~--~~dlLiIDDi~ 103 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL--QAAAGRLRDALEALE--GRSLVALDGLE 103 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH--HHhhhhHHHHHHHHh--cCCEEEEeCcc
Confidence 3333333333333356999999999999999999876543 110 0000 001111223333443 34699999997
Q ss_pred ccc---CcchhcCCCCC--CCCCcEEEEeecCCC
Q 043214 208 ASL---DFEKVGIPFGD--NHKGCKVLMTARNPD 236 (793)
Q Consensus 208 ~~~---~~~~l~~~~~~--~~~gs~IivTTR~~~ 236 (793)
... .|+.....+.+ ..+|..||+||+...
T Consensus 104 ~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p 137 (233)
T PRK08727 104 SIAGQREDEVALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred cccCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 542 23321111111 234667999998643
No 79
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.51 E-value=0.00012 Score=73.27 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-ceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCC
Q 043214 128 RMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-ISFLMRSCLQSESRRARRLCERLKKEKKILVILDNI 206 (793)
Q Consensus 128 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv 206 (793)
....++.+.+++.......+.|+|..|+|||+||+.+++.... ..-...............+.+.+.+ .-+|||||+
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~lLvIDdi 99 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQ--ADLVCLDDV 99 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhccc--CCEEEEeCh
Confidence 4456677777765556678999999999999999999987542 0000000000000111223333332 348999999
Q ss_pred Cccc---Ccc-hhcCCCCC-CCCCcEEEEeecC
Q 043214 207 WASL---DFE-KVGIPFGD-NHKGCKVLMTARN 234 (793)
Q Consensus 207 ~~~~---~~~-~l~~~~~~-~~~gs~IivTTR~ 234 (793)
.... .|. .+...+.. ...+.+||+||+.
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 8753 232 23222211 1234579998874
No 80
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=4.5e-05 Score=74.60 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=52.5
Q ss_pred cCCCcceEEEecCCcCC---CCChhhhcccCCcEEEcCCcccCC-Cccc-ccCCcccEEEecCCCCc--ccChhcccCCC
Q 043214 468 IGMTELRVLDFVAMHLP---SLPSSLCLLSNLQTLCLDYGVFGD-VSII-GELKTLEILSFQGSNIE--EFPREIGQLTR 540 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~---~lp~~i~~l~~L~~L~L~~~~~~~-~~~i-~~l~~L~~L~l~~~~l~--~lp~~i~~L~~ 540 (793)
..+.+++.|||.+|.+. .+..-+.+|++|++|+|+.|.+.. +.++ ..+.+|++|-+.++.+. ..-.....+|+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45667777777777665 234445667777777777777655 4555 36677777777776443 44445666677
Q ss_pred CCEEecCCC
Q 043214 541 LRLLNLAYC 549 (793)
Q Consensus 541 L~~L~l~~~ 549 (793)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777766665
No 81
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.50 E-value=0.0058 Score=69.95 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=41.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+..++|++..+..+.+.+.......+.|+|.+|+||||+|+.+++..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 456788999999988888776667789999999999999999998765
No 82
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.00071 Score=76.28 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=73.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------cee-----cccc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------ISF-----LMRS 177 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq~-----~~~~ 177 (793)
.+..++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+.+..-- +.- ...+
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 3566889999999999998866654 5579999999999999988765421 000 0001
Q ss_pred cc--CChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 178 CL--QSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 178 ~~--~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+. ....+.++.+.+... .++.=++|||++.... .++.+...+..-....++|+||++..
T Consensus 94 DAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 94 DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred cccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 11 111122333333322 2344578899998874 36666555544445778888888776
No 83
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.49 E-value=0.00012 Score=75.72 Aligned_cols=242 Identities=18% Similarity=0.209 Sum_probs=137.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh-ce----------ecc------------ccccCChHHHHHHHHHHHhcCCeE
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK-IS----------FLM------------RSCLQSESRRARRLCERLKKEKKI 199 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq----------~~~------------~~~~~~~~~~~~~l~~~l~~~kr~ 199 (793)
..+-+.++|.|||||||++-.+.. ... |. +++ ....+.-+.....+..++.. +|.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~-rr~ 90 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGD-RRA 90 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhh-hhH
Confidence 457899999999999999998887 332 21 110 01111112233355556665 899
Q ss_pred EEEEeCCCccc-CcchhcCCCCCCCCCcEEEEeecCCCCCC-----------------------------CCCCChhhHH
Q 043214 200 LVILDNIWASL-DFEKVGIPFGDNHKGCKVLMTARNPDISG-----------------------------DYAENEDLQS 249 (793)
Q Consensus 200 LlVLDdv~~~~-~~~~l~~~~~~~~~gs~IivTTR~~~~~~-----------------------------~~~~~~~~~~ 249 (793)
++|+||.-+.. +-..+...+-.+.+.-.|+.|+|...... .......-..
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a 170 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAA 170 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCchH
Confidence 99999987652 22222222223344556888888776110 0011112234
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHH----HcCCCCCCCCCCchhhhhhHHHHhhcCCchhhHHHHHHh
Q 043214 250 IAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQE----LRRPSGRSFTGVPAEAYSTIELSYNHLEGEELKSTFLLC 325 (793)
Q Consensus 250 ~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~ 325 (793)
.+..|.+..+|.|++|...++..+.-...+-...++. +... ......-.......+.+||.-|... -+--|--+
T Consensus 171 ~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~~~~~rL 248 (414)
T COG3903 171 AVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ERALFGRL 248 (414)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HHHHhcch
Confidence 5778999999999999999999987755544444432 2221 1111111455678899999999987 47778888
Q ss_pred ccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHccccccC--CCCcceehhHHHHHHHHHH
Q 043214 326 SLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKTSCLLLDG--HTSEEFSMHDVVRDVAISI 397 (793)
Q Consensus 326 s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~~sll~~~--~~~~~~~mhdlv~~l~~~~ 397 (793)
+.|...+. .+ ...|.+-|-.- ..........+..+++.++.... .....++.-+-.+.++..+
T Consensus 249 a~~~g~f~--~~--l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 249 AVFVGGFD--LG--LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred hhhhhhhc--cc--HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88888333 33 23344433211 01111222344557777776432 2233455555555555544
No 84
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.46 E-value=0.00013 Score=70.44 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=32.8
Q ss_pred cccccHHHHHHHHHHhC---CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 124 AFESRMSTLNDVLNALN---NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|+++++.....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999983 456789999999999999999998886544
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0013 Score=73.25 Aligned_cols=115 Identities=14% Similarity=0.262 Sum_probs=69.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh-----------------c------e-ecc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK-----------------I------S-FLM 175 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-----------------f------q-~~~ 175 (793)
.+..++|.+..++.+...+..+.+ ..+-++|+.|+||||+|+.+++...- + . +..
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 356688999999999888876555 45789999999999999999875421 0 0 000
Q ss_pred ccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 176 RSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 176 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
........+..+.+.+.+. .+++-++|+|++... ..++.+...+......+.+|++|.+.
T Consensus 94 daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 94 DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 0001111122233333322 235669999999765 34555555554434566666666443
No 86
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0015 Score=68.67 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=73.2
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh---------c-eeccccccCChHHHHHHHH
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK---------I-SFLMRSCLQSESRRARRLC 190 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---------f-q~~~~~~~~~~~~~~~~l~ 190 (793)
+..++|.+..++.+.+++..+.++ ..-++|+.|+||||+|+.+++..-. | .+..........+.+..+.
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~ 82 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII 82 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH
Confidence 456788888889999988866554 6689999999999999999885421 1 1111011111122344444
Q ss_pred HHHh-----cCCeEEEEEeCCC--cccCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 191 ERLK-----KEKKILVILDNIW--ASLDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 191 ~~l~-----~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+.+. +++| ++|+||+. +...++.+...+..-.+++.+|++|.+.+
T Consensus 83 ~~~~~~p~~~~~k-v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 83 EEVNKKPYEGDKK-VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHhcCcccCCce-EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 4332 3344 45556554 44568888777766667899999987665
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.42 E-value=0.00091 Score=71.47 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=40.3
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+..++|++..++.+.+++..+..+.+-++|..|+||||+|+.+.+..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999998887776778899999999999999987764
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.36 E-value=0.00068 Score=65.11 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=49.0
Q ss_pred CcccccccHHHHHHHHHHhC-----CCCceEEEEEecCCChHHHHHHHHHhhhhh-ceeccccccCChHHHHHHHHHHHh
Q 043214 121 CYEAFESRMSTLNDVLNALN-----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-ISFLMRSCLQSESRRARRLCERLK 194 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq~~~~~~~~~~~~~~~~l~~~l~ 194 (793)
....|+|.+.-++.+.-.+. ++.+.-+-+||++|.||||||.-+.+.... |........+...+. ..+...+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl-~~il~~l~ 100 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDL-AAILTNLK 100 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHH-HHHHHT--
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHH-HHHHHhcC
Confidence 46778898887766544332 356788999999999999999999998876 542111111111222 23333343
Q ss_pred cCCeEEEEEeCCCcc
Q 043214 195 KEKKILVILDNIWAS 209 (793)
Q Consensus 195 ~~kr~LlVLDdv~~~ 209 (793)
++-+|++|.+...
T Consensus 101 --~~~ILFIDEIHRl 113 (233)
T PF05496_consen 101 --EGDILFIDEIHRL 113 (233)
T ss_dssp --TT-EEEECTCCC-
T ss_pred --CCcEEEEechhhc
Confidence 4568888999765
No 89
>PRK09087 hypothetical protein; Validated
Probab=97.34 E-value=0.0017 Score=64.29 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=46.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhhceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCccc----CcchhcCCC
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSESRRARRLCERLKKEKKILVILDNIWASL----DFEKVGIPF 219 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~----~~~~l~~~~ 219 (793)
-+.+.|||..|+|||+|++.+.+......+ +...........+.. -+|++||+.... .+-++...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i-------~~~~~~~~~~~~~~~---~~l~iDDi~~~~~~~~~lf~l~n~~ 113 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLI-------HPNEIGSDAANAAAE---GPVLIEDIDAGGFDETGLFHLINSV 113 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEe-------cHHHcchHHHHhhhc---CeEEEECCCCCCCCHHHHHHHHHHH
Confidence 457899999999999999998876443000 000111122222222 378889996532 121221111
Q ss_pred CCCCCCcEEEEeecCCC
Q 043214 220 GDNHKGCKVLMTARNPD 236 (793)
Q Consensus 220 ~~~~~gs~IivTTR~~~ 236 (793)
...|..||+|++...
T Consensus 114 --~~~g~~ilits~~~p 128 (226)
T PRK09087 114 --RQAGTSLLMTSRLWP 128 (226)
T ss_pred --HhCCCeEEEECCCCh
Confidence 234677999988543
No 90
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.33 E-value=1.9e-05 Score=68.17 Aligned_cols=106 Identities=16% Similarity=0.341 Sum_probs=52.1
Q ss_pred CeEEecCCCccccccc----CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEc
Q 043214 426 PAISLHNCKIDELLEG----LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCL 501 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 501 (793)
..+++++|.+..+++. ....+|....+++|.+. .+|..+-.+++....|++++|.+..+|..+..++.||.|++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3344555544333322 13334444555555444 45555444445555555555555555555555555555555
Q ss_pred CCcccCC-CcccccCCcccEEEecCCCCcccCh
Q 043214 502 DYGVFGD-VSIIGELKTLEILSFQGSNIEEFPR 533 (793)
Q Consensus 502 ~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~ 533 (793)
+.|.+.. |.-|..|.+|-.|+..++.+.++|-
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 5555444 4444445555555555554444443
No 91
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0012 Score=71.58 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=70.2
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------ce--eccc---cc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------IS--FLMR---SC 178 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq--~~~~---~~ 178 (793)
+..++|.+..+..|..++..+.+. .+-++|..|+||||+|+.+++...- |. .... .+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEId 96 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEID 96 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeec
Confidence 456788888888888888877665 5899999999999999999875421 00 0000 01
Q ss_pred --cCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 179 --LQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 179 --~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
.....+.++.+.+.+. .+++-++|+|++... ..++.+...+........+|.+|...
T Consensus 97 aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~ 161 (484)
T PRK14956 97 AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEF 161 (484)
T ss_pred hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCCh
Confidence 0111223334444332 345668999999876 45666655553333455555565543
No 92
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.31 E-value=0.00035 Score=75.13 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=56.0
Q ss_pred cccccccHHHHHHHHHHhC----C---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc-ccc---cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN----N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM-RSC---LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~-~~~---~~~~ 182 (793)
+..+.|+++.++++.+.+. . ...+-+.++|.+|+|||++|+++++.... | .+.. ... ....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~ 200 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEG 200 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHH
Confidence 4467899999888887653 1 22456899999999999999999987665 2 2110 000 0011
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
......+.+........+|+|||++..
T Consensus 201 ~~~i~~~f~~a~~~~p~il~iDEiD~l 227 (364)
T TIGR01242 201 ARLVREIFELAKEKAPSIIFIDEIDAI 227 (364)
T ss_pred HHHHHHHHHHHHhcCCcEEEhhhhhhh
Confidence 122333444444445689999999754
No 93
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.012 Score=65.85 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=72.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh----------------------ce-----
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK----------------------IS----- 172 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~----------------------fq----- 172 (793)
.+..++|.+..++.|.+.+..+.+. .+-++|..|+||||+|+.+.+..-- |.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 3556889999999999988876654 5689999999999999998764421 00
Q ss_pred --eccccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 173 --FLMRSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 173 --~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+..+-......+.++.+.+.+. .+++-++|+|++... ..++.+...+..-....++|++|.+..
T Consensus 94 DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 94 DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 0000001111233334444432 345568999999877 346666555544345667777776554
No 94
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.28 E-value=0.0018 Score=68.53 Aligned_cols=114 Identities=9% Similarity=0.062 Sum_probs=68.2
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--ce---ecccc-ccCChHHHHHHHHHHHh-
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--IS---FLMRS-CLQSESRRARRLCERLK- 194 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq---~~~~~-~~~~~~~~~~~l~~~l~- 194 (793)
+..++|+++.++.+..++.......+-++|..|.||||+|+.+.+.... +. +.... +..........+.+...
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFART 95 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhc
Confidence 3457899999999999988777777899999999999999999887532 11 10000 11111111122222221
Q ss_pred ---c-CCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCC
Q 043214 195 ---K-EKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 195 ---~-~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
. ..+-+|++|++.... ..+.+...+....+.+++|+++...
T Consensus 96 ~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 96 APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 1 235689999987652 2334433333334456788877543
No 95
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.27 E-value=0.00073 Score=60.87 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=55.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh--------h---c------------------eecccccc-CChHHHHHHHHHHH
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK--------K---I------------------SFLMRSCL-QSESRRARRLCERL 193 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~--------~---f------------------q~~~~~~~-~~~~~~~~~l~~~l 193 (793)
-+.+.|+|.+|+|||++++.+.+... . + ++...... .+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46889999999999999999988653 1 1 01222222 34556667888888
Q ss_pred hcCCeEEEEEeCCCcc-c--CcchhcCCCCCCCCCcEEEEeec
Q 043214 194 KKEKKILVILDNIWAS-L--DFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 194 ~~~kr~LlVLDdv~~~-~--~~~~l~~~~~~~~~gs~IivTTR 233 (793)
...+..+||+||+... . .++.+.... +..+.+||+..+
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~ 124 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGT 124 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEES
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEEC
Confidence 7766679999999875 2 233342222 255667777665
No 96
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.0005 Score=61.98 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=40.8
Q ss_pred EEEEecCCChHHHHHHHHHhhhhh-c-eecccc----ccCChHHHHHHHHHHHhcCC-eEEEEEeCCCcc
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMRS----CLQSESRRARRLCERLKKEK-KILVILDNIWAS 209 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~~----~~~~~~~~~~~l~~~l~~~k-r~LlVLDdv~~~ 209 (793)
|-|+|.+|.||||+|+.+++.... | .+.... ...+.......+.+...... +.+|++||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 569999999999999999998765 2 221111 11122333444444444333 799999999765
No 97
>PHA00729 NTP-binding motif containing protein
Probab=97.26 E-value=0.00088 Score=65.04 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=43.8
Q ss_pred HHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh----c-------eeccccccCChHHHHHHHHHHHhcCCeE-EE
Q 043214 134 DVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----I-------SFLMRSCLQSESRRARRLCERLKKEKKI-LV 201 (793)
Q Consensus 134 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----f-------q~~~~~~~~~~~~~~~~l~~~l~~~kr~-Ll 201 (793)
++++.+...+...|.|+|.+|+||||||.++.+..-. + +-.....-.+.+.....+.+...+..++ +|
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlL 86 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLI 86 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEE
Confidence 3444455566678999999999999999999886431 0 0000001122344455555544432333 79
Q ss_pred EEeCC
Q 043214 202 ILDNI 206 (793)
Q Consensus 202 VLDdv 206 (793)
|+||+
T Consensus 87 IIDd~ 91 (226)
T PHA00729 87 IFDDA 91 (226)
T ss_pred EEeCC
Confidence 99993
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.25 E-value=0.0018 Score=64.76 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--cee-ccccccCChHHHHHHHHHHHhcCCeEEEEEeCC
Q 043214 130 STLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISF-LMRSCLQSESRRARRLCERLKKEKKILVILDNI 206 (793)
Q Consensus 130 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~-~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv 206 (793)
..+..+.++........+.|+|+.|+|||+||+++++.... .++ ...... .......+.+.+.. --+|++||+
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~--~~~~~~~~~~~~~~--~dlliiDdi 106 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK--RAWFVPEVLEGMEQ--LSLVCIDNI 106 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH--HhhhhHHHHHHhhh--CCEEEEeCh
Confidence 34455555544445568999999999999999999886542 000 000000 00111233333332 248999999
Q ss_pred Ccc---cCcchh-cCCCCC-CCCC-cEEEEeecCCC
Q 043214 207 WAS---LDFEKV-GIPFGD-NHKG-CKVLMTARNPD 236 (793)
Q Consensus 207 ~~~---~~~~~l-~~~~~~-~~~g-s~IivTTR~~~ 236 (793)
... .+|+.- ...+.. ...| .++|+||+...
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 764 344321 111111 1133 37999998553
No 99
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0016 Score=69.79 Aligned_cols=115 Identities=12% Similarity=0.254 Sum_probs=72.5
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------c------eec-cc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------I------SFL-MR 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------f------q~~-~~ 176 (793)
+..++|.+..++.+.+.+..+.+. .+-++|..|+||||+|+.+.+.... + .+. ..
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 556889999898888888765554 6789999999999999999876531 0 000 00
Q ss_pred cccCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 177 SCLQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 177 ~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.......+..+.+.+.+. .+++-++|+|++.... .++.+...+.......++|++|.+..
T Consensus 95 ~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 95 AASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred ccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 000111233344444432 2345589999998774 46666555544445677888775443
No 100
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0016 Score=72.35 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=70.7
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh---c----------------------eecc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK---I----------------------SFLM 175 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---f----------------------q~~~ 175 (793)
+..++|.+..++.|..++..+.+. .+-++|++|+||||+|+.+++.... + .+..
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 456789888888888888866654 5699999999999999999876531 0 0111
Q ss_pred ccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 176 RSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 176 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
......+.++.+.+.+. .+++-+||+|+++.. ..++.+...+....+...+|++|...
T Consensus 93 --~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 93 --ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred --cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 11111233344444432 135568999999866 34666655554444455666666544
No 101
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.17 E-value=0.012 Score=67.30 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=38.2
Q ss_pred ccccccHHHHHHHHHHhC----CCC-ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 123 EAFESRMSTLNDVLNALN----NPN-VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~----~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+.+|++++++|...|. ... ..++-|+|.+|.|||+.++.|.+...
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999988776 223 35778999999999999999987653
No 102
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.0005 Score=63.90 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=65.3
Q ss_pred cCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChhccc-CCCCCEEecCCCcCc--cccChhhhcCCCCcceee
Q 043214 494 SNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQ-LTRLRLLNLAYCNLL--KVIPSNVLSSLSRLEELY 570 (793)
Q Consensus 494 ~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~-L~~L~~L~l~~~~~~--~~~p~~~i~~l~~L~~L~ 570 (793)
.+...++|++|.+.....+..++.|.+|.+.+|.|+.+-+.+.. +++|..|.+.+|+.. +.+-+ +..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceee
Confidence 35666777777777777777778888888888877777555554 466888877776542 23333 55677777777
Q ss_pred ccccccceeecccccccCcccHHHhcCCCCCcEEEEEe
Q 043214 571 MGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQI 608 (793)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~ 608 (793)
+-+|.....-. --.--+..+++|+.|+...
T Consensus 120 ll~Npv~~k~~--------YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKN--------YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccC--------ceeEEEEecCcceEeehhh
Confidence 76665432110 0112245566777776653
No 103
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0036 Score=69.95 Aligned_cols=116 Identities=13% Similarity=0.248 Sum_probs=72.2
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh-----------------ce------e-cc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK-----------------IS------F-LM 175 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq------~-~~ 175 (793)
.+..++|.+...+.|.+++..+.+ ..+-++|..|+||||+|+.+.+..-- +. + ..
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 356688999999999998886654 47799999999999999998775421 00 0 00
Q ss_pred ccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 176 RSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 176 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
........+.++.+.+... .+++=++|+|+|... ...+.+...+....++.++|++|.+..
T Consensus 93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 0001111222333433331 235568999999876 345555444433345668888886544
No 104
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.12 E-value=0.0013 Score=66.54 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=57.3
Q ss_pred HHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh----c-eecccccc-CChHHHHHHHHHH-HhcCCeEEEEEeCCC
Q 043214 135 VLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----I-SFLMRSCL-QSESRRARRLCER-LKKEKKILVILDNIW 207 (793)
Q Consensus 135 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----f-q~~~~~~~-~~~~~~~~~l~~~-l~~~kr~LlVLDdv~ 207 (793)
|...+.++.+.-+.+||.+|.||||||+.+.+..+. | .++..... .+..+..++-++. ...+||-.|++|.|.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiH 232 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIH 232 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhh
Confidence 334455788889999999999999999999987665 2 12211111 1111222222221 123588999999997
Q ss_pred cccCcc-hhcCCCCCCCCCcEEEE--eecCC
Q 043214 208 ASLDFE-KVGIPFGDNHKGCKVLM--TARNP 235 (793)
Q Consensus 208 ~~~~~~-~l~~~~~~~~~gs~Iiv--TTR~~ 235 (793)
.-..-+ ++. +|.-.+|+-++| ||-+.
T Consensus 233 RFNksQQD~f--LP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 233 RFNKSQQDTF--LPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhhhhhhcc--cceeccCceEEEecccCCC
Confidence 653221 222 344556775555 44433
No 105
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0078 Score=66.83 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=38.5
Q ss_pred ccccHHHHHHHHHHhC------CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 125 FESRMSTLNDVLNALN------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
-+|-++.+++|++.|- .-.-++++.||++|+|||+|++.|++....
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R 376 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR 376 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC
Confidence 4588888999999875 223469999999999999999999998765
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.10 E-value=0.0013 Score=78.26 Aligned_cols=89 Identities=17% Similarity=0.284 Sum_probs=62.2
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------ceeccc--c----ccCC
Q 043214 120 WCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------ISFLMR--S----CLQS 181 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------fq~~~~--~----~~~~ 181 (793)
....+++||+++++.+++.|......-+.++|.+|+|||++|..++..... +.+... . ....
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 345789999999999999998544455679999999999999999887542 111110 0 0112
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.++....+.+.+...++.+|++|++..
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~ 282 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHT 282 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHH
Confidence 234555666666555679999999964
No 107
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.08 E-value=0.0016 Score=76.47 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=62.0
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------ceecc--cc----ccCCh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------ISFLM--RS----CLQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------fq~~~--~~----~~~~~ 182 (793)
...+++||+.+++++++.|......=+.++|.+|+|||++|+.+.+.... |.+.. -. .....
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 45688999999999999887555556679999999999999999887522 12110 00 11122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
......+.+.+...++.+|++|++...
T Consensus 260 e~~l~~i~~~~~~~~~~ILfiDEih~l 286 (731)
T TIGR02639 260 EERLKAVVSEIEKEPNAILFIDEIHTI 286 (731)
T ss_pred HHHHHHHHHHHhccCCeEEEEecHHHH
Confidence 345566666665446799999998743
No 108
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.0014 Score=60.96 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=44.1
Q ss_pred hcCCCcceEEEecCCcCCCCChhhhc-ccCCcEEEcCCcccCC---CcccccCCcccEEEecCCCCcccCh----hcccC
Q 043214 467 FIGMTELRVLDFVAMHLPSLPSSLCL-LSNLQTLCLDYGVFGD---VSIIGELKTLEILSFQGSNIEEFPR----EIGQL 538 (793)
Q Consensus 467 ~~~~~~Lr~L~l~~~~~~~lp~~i~~-l~~L~~L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~----~i~~L 538 (793)
|..++.|.+|.+++|.|+.+-+.+.. +++|..|.|.+|.+.. +..+..++.|++|.+-+|.++..+. -+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 34555555555555555544333322 3446666665555443 3444555666666666665553332 25566
Q ss_pred CCCCEEecCC
Q 043214 539 TRLRLLNLAY 548 (793)
Q Consensus 539 ~~L~~L~l~~ 548 (793)
++|+.||+.+
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 7777776654
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.0031 Score=72.81 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=72.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCceE-EEEEecCCChHHHHHHHHHhhhhh--c-------------eec-------ccc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNM-IGVYGMAGVGKTKLVKEAPRLAKK--I-------------SFL-------MRS 177 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~--f-------------q~~-------~~~ 177 (793)
.+..++|.+..++.|.+.+..+.+.- +-++|..|+||||+|+.+++..-. . ++. ...
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 35668899999999988888766664 589999999999999999876421 0 000 001
Q ss_pred ccC--ChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 178 CLQ--SESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 178 ~~~--~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+.. ...+.++.+.+.+. .+++-++|||++... ...+.|...+-.-....++|++|.+..
T Consensus 94 dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 94 DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 111 11222344444332 346679999999876 345555444433334567777766555
No 110
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.0015 Score=61.69 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=40.0
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh--ce-----eccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK--IS-----FLMRSCLQSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~--fq-----~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.|.|+|++|+||||||+.+.+.... +. ........+.++....+.+.+.+ .+ .|+|+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--wIidg~~~~ 69 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLK-HD--WIIDGNYSW 69 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhC-CC--EEEcCcchh
Confidence 5899999999999999999876433 11 11122233345566666666765 44 688887543
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0049 Score=67.86 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=38.6
Q ss_pred cccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+..++|.+...+.+...+..+.+ ..+-++|.+|+||||+|+.+.+..
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688988888888887776666 468899999999999999998754
No 112
>PRK06620 hypothetical protein; Validated
Probab=97.01 E-value=0.0015 Score=64.09 Aligned_cols=78 Identities=21% Similarity=0.114 Sum_probs=45.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhhceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC--cchhcCCCCCC
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSESRRARRLCERLKKEKKILVILDNIWASLD--FEKVGIPFGDN 222 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~--~~~l~~~~~~~ 222 (793)
+.+-|||.+|+|||+|++++.+....+-+. ..... .+... +.-+|++||+....+ +-.+...+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~-------~~~~~---~~~~~--~~d~lliDdi~~~~~~~lf~l~N~~--~ 110 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK-------DIFFN---EEILE--KYNAFIIEDIENWQEPALLHIFNII--N 110 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc-------hhhhc---hhHHh--cCCEEEEeccccchHHHHHHHHHHH--H
Confidence 678999999999999999988765430000 00000 01222 235788999974321 11111111 2
Q ss_pred CCCcEEEEeecCCC
Q 043214 223 HKGCKVLMTARNPD 236 (793)
Q Consensus 223 ~~gs~IivTTR~~~ 236 (793)
.+|..||+|++...
T Consensus 111 e~g~~ilits~~~p 124 (214)
T PRK06620 111 EKQKYLLLTSSDKS 124 (214)
T ss_pred hcCCEEEEEcCCCc
Confidence 45778999998554
No 113
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.01 E-value=0.00014 Score=82.06 Aligned_cols=111 Identities=20% Similarity=0.156 Sum_probs=66.3
Q ss_pred cccCCcEEEcCCcc-cCC---CcccccCCcccEEEecCC--CCccc----ChhcccCCCCCEEecCCCcCccccChhhh-
Q 043214 492 LLSNLQTLCLDYGV-FGD---VSIIGELKTLEILSFQGS--NIEEF----PREIGQLTRLRLLNLAYCNLLKVIPSNVL- 560 (793)
Q Consensus 492 ~l~~L~~L~L~~~~-~~~---~~~i~~l~~L~~L~l~~~--~l~~l----p~~i~~L~~L~~L~l~~~~~~~~~p~~~i- 560 (793)
.+++|+.|.+.+|. +.. -+.....++|+.|++++| .+... +.....+.+|++|+++.|......--..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36788888888874 443 255567888999998873 22211 12334567888888888764332221112
Q ss_pred cCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccC
Q 043214 561 SSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDA 611 (793)
Q Consensus 561 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~ 611 (793)
..+++|++|.+..|... .......-...+++|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~l---------t~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNL---------TDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCcc---------chhHHHHHHHhcCcccEEeeecCcc
Confidence 23778888887666531 1112223345577788888885543
No 114
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.0023 Score=72.19 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=69.7
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------c------ee-cc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------I------SF-LM 175 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------f------q~-~~ 175 (793)
.+..++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+.+..-- + ++ ..
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3566889999999999988866654 6799999999999999998775311 0 00 00
Q ss_pred ccccCChHHHHHHHHHHH----hcCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 176 RSCLQSESRRARRLCERL----KKEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 176 ~~~~~~~~~~~~~l~~~l----~~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
........+.++.+.+.. ..+++-++|+|++.... ..+.+...+..-....++|++|.+..
T Consensus 94 daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 000111122233333322 11355689999997653 23444444433334567887776544
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.0093 Score=64.82 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=71.2
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-------------------------ceecc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-------------------------ISFLM 175 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-------------------------fq~~~ 175 (793)
+..++|.+..++.|..++..+.+. .+-++|+.|+||||+|+.+.+...- |..+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 556889888888888888876665 4889999999999999998775421 00000
Q ss_pred --c---cc--cCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeec
Q 043214 176 --R---SC--LQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 176 --~---~~--~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR 233 (793)
. ++ .....+.+..+.+.+. .+++-++|+|++.... .++.+...+.+..+.+.+|++|.
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 0 01 1111233444555552 1345688999998663 56666666554455677777664
No 116
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.95 E-value=0.0088 Score=66.83 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=39.6
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+..++|++..++.+.+.+..+.+. .+-++|+.|+||||+|+.+.+..
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 556889999999999988765544 68899999999999999998764
No 117
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.95 E-value=0.0042 Score=58.98 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=38.5
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 123 EAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..++|.++.++.+--...++++.-+.|.||+|+||||=+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3477888888887776778899999999999999999888877754
No 118
>PRK08118 topology modulation protein; Reviewed
Probab=96.94 E-value=0.002 Score=60.58 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+.|.|+|++|+||||||+.+++....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998654
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.88 E-value=0.0032 Score=74.92 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=60.8
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------c--eeccccc----cCCh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------I--SFLMRSC----LQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------f--q~~~~~~----~~~~ 182 (793)
...+++||+.++.++++.|....-.-+.++|.+|+||||+|+.+...... + +++.-.. ....
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~ 255 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 255 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh
Confidence 45679999999999999887555556679999999999999999887521 1 1111111 1122
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLK-KEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~-~~kr~LlVLDdv~~~ 209 (793)
.+..+.+.+.+. .+++.+|++|++...
T Consensus 256 e~~lk~~~~~~~~~~~~~ILfIDEih~l 283 (857)
T PRK10865 256 EERLKGVLNDLAKQEGNVILFIDELHTM 283 (857)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecHHHh
Confidence 334555555543 246799999999754
No 120
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0048 Score=68.26 Aligned_cols=112 Identities=14% Similarity=0.217 Sum_probs=69.5
Q ss_pred cccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh---------ce----------ec-------
Q 043214 122 YEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK---------IS----------FL------- 174 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---------fq----------~~------- 174 (793)
+..++|.+..+..+...+..+.+ ..+-++|..|+||||+|+.+++..-. +. +.
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 45677888888888776665543 57889999999999999999876421 00 00
Q ss_pred --cccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeec
Q 043214 175 --MRSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 175 --~~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR 233 (793)
.+.......+..+.+.+... .+++-++|+|+++.. ..++.+...+....+.+.+|++|.
T Consensus 100 ~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 100 IEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred EEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 00001111222333333332 235678999999876 457777666654455667776664
No 121
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.005 Score=67.52 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=69.5
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------c------e-eccc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------I------S-FLMR 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------f------q-~~~~ 176 (793)
+..++|.+..++.+.+.+..+.+. .+-++|..|+||||+|+.+.+..-- + . +..+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 556789888888888887766665 7899999999999999998764310 0 0 0001
Q ss_pred cccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeec
Q 043214 177 SCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 177 ~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR 233 (793)
.......+..+.+.+... .+++=++|+|++... ...+.+...+..-.+..++|++|.
T Consensus 92 aas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 92 AASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred cccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 111111233334444332 134557999999765 335555555544445678887774
No 122
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.011 Score=58.19 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=52.9
Q ss_pred cccccccHHHHHHHHHHhC-----CCCceEEEEEecCCChHHHHHHHHHhhhhh-ceeccccccCChHHHHHHHHHHHhc
Q 043214 122 YEAFESRMSTLNDVLNALN-----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-ISFLMRSCLQSESRRARRLCERLKK 195 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq~~~~~~~~~~~~~~~~l~~~l~~ 195 (793)
+..|+|.++.++++-=++. +..+--+-++|++|.||||||.-+++.... ++.......+. ......+...|..
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-~gDlaaiLt~Le~ 103 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-PGDLAAILTNLEE 103 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-hhhHHHHHhcCCc
Confidence 4567888877776655444 556779999999999999999999998766 33211111111 1222233333433
Q ss_pred CCeEEEEEeCCCcc
Q 043214 196 EKKILVILDNIWAS 209 (793)
Q Consensus 196 ~kr~LlVLDdv~~~ 209 (793)
.=.+++|.+...
T Consensus 104 --~DVLFIDEIHrl 115 (332)
T COG2255 104 --GDVLFIDEIHRL 115 (332)
T ss_pred --CCeEEEehhhhc
Confidence 345677887653
No 123
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.85 E-value=0.00016 Score=62.62 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=44.9
Q ss_pred cCCCcceEEEecCCcCCCCChhhhccc-CCcEEEcCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEe
Q 043214 468 IGMTELRVLDFVAMHLPSLPSSLCLLS-NLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLN 545 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 545 (793)
.+..+|...++++|.+.+.|+.+.... -+..|++.+|.+.+ |..+..++.|+.|+++.|.+...|.-+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 344555566666666666665554332 45555555555555 5555555555555555555555555555555555555
Q ss_pred cCCC
Q 043214 546 LAYC 549 (793)
Q Consensus 546 l~~~ 549 (793)
..++
T Consensus 130 s~~n 133 (177)
T KOG4579|consen 130 SPEN 133 (177)
T ss_pred CCCC
Confidence 5443
No 124
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.02 Score=60.81 Aligned_cols=86 Identities=27% Similarity=0.323 Sum_probs=61.4
Q ss_pred cccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhhhh----c--------------e--------e
Q 043214 124 AFESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----I--------------S--------F 173 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----f--------------q--------~ 173 (793)
.+.+|+.+++++...|. ++.+.-+-|+|..|.|||+.++.+.+..+. . | +
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37899999999887765 344445999999999999999999987654 1 1 1
Q ss_pred -ccccccCChHHHHHHHHHHHhc-CCeEEEEEeCCCcc
Q 043214 174 -LMRSCLQSESRRARRLCERLKK-EKKILVILDNIWAS 209 (793)
Q Consensus 174 -~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVLDdv~~~ 209 (793)
.......+..+..+.+.+.+.. ++.+.||||+++..
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 1122223444555666666643 57899999999876
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.82 E-value=0.0022 Score=65.40 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...-+.++|.+|.||||+|+.+++...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999987653
No 126
>PRK08181 transposase; Validated
Probab=96.82 E-value=0.0032 Score=63.79 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 137 NALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 137 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+|+. ...-+.++|.+|+|||.||.++.+...
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 4554 234589999999999999999987653
No 127
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.81 E-value=0.0011 Score=58.85 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
||+|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999988643
No 128
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.028 Score=60.63 Aligned_cols=114 Identities=16% Similarity=0.278 Sum_probs=67.6
Q ss_pred cccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh-----------ceec-cccccCChHHHHHH
Q 043214 122 YEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK-----------ISFL-MRSCLQSESRRARR 188 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-----------fq~~-~~~~~~~~~~~~~~ 188 (793)
+..++|.+...+.+.+.+..+.+ ..+-++|..|+||||+|+.+.+.... |.+. .........+....
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 95 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRN 95 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHH
Confidence 55678999999999999886655 48889999999999999999776432 1110 00001111122333
Q ss_pred HHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCC
Q 043214 189 LCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 189 l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
+.+... .+++-+||+|++.... .++.+...+......+.+|++|...
T Consensus 96 l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 96 LIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred HHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 333221 1244579999987552 3555543333223345666666433
No 129
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0019 Score=67.55 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=23.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
-+..+|+|.+|+||||||++||+....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 367899999999999999999997654
No 130
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.80 E-value=0.0022 Score=69.27 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=56.7
Q ss_pred cccccccHHHHHHHHHHhC----C---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-c---ccCCh
Q 043214 122 YEAFESRMSTLNDVLNALN----N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-S---CLQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~---~~~~~ 182 (793)
+..+.|+++.++++.+.+. . ..++-|-++|.+|.|||++|+++++.... | .+... . .....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~ 209 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEG 209 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccch
Confidence 3456799998888887653 1 24567899999999999999999987655 2 21110 0 00111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
......+.+........+|+|||++..
T Consensus 210 ~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 210 ARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 223344444444445689999999753
No 131
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.012 Score=65.61 Aligned_cols=115 Identities=15% Similarity=0.297 Sum_probs=71.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh---c--------------e-------ecc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK---I--------------S-------FLM 175 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---f--------------q-------~~~ 175 (793)
.+..++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+.+..-- + . +..
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3566889999999999999876665 5689999999999999998875421 0 0 000
Q ss_pred ccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 176 RSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 176 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
........+..+.+.+.+. .++.=++|+|+|... ...+.+...+..-.+.+++|++|.+.
T Consensus 94 daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 94 DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 0001111222333444332 245568899999876 34555544444334567777776543
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=96.79 E-value=0.006 Score=60.98 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=49.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh--ceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcc---cCcch-hcCC
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRSCLQSESRRARRLCERLKKEKKILVILDNIWAS---LDFEK-VGIP 218 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~---~~~~~-l~~~ 218 (793)
..+.|+|..|+|||.||+++.+.... -.+. -....+.......+.+.+.+ - =+||+||+... ..|+. +...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~-y~~~~~~~~~~~~~~~~~~~-~-d~LiiDDi~~~~~~~~~~~~Lf~l 122 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAV-YLPLAELLDRGPELLDNLEQ-Y-ELVCLDDLDVIAGKADWEEALFHL 122 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE-EeeHHHHHhhhHHHHHhhhh-C-CEEEEechhhhcCChHHHHHHHHH
Confidence 57899999999999999999876432 0000 00000000112334444443 1 26889999743 34543 2222
Q ss_pred CCC-CCCCcEEEEeecCCC
Q 043214 219 FGD-NHKGCKVLMTARNPD 236 (793)
Q Consensus 219 ~~~-~~~gs~IivTTR~~~ 236 (793)
+.. ..+|.+||+||+...
T Consensus 123 ~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 123 FNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred HHHHHhcCCEEEEeCCCCH
Confidence 211 234678999988654
No 133
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.79 E-value=0.02 Score=61.54 Aligned_cols=114 Identities=14% Similarity=0.225 Sum_probs=69.0
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----c------------------eec-cc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----I------------------SFL-MR 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----f------------------q~~-~~ 176 (793)
+..++|.+..++.+.+++..+.+. .+-++|..|+||||+|+.+.+.... + .+. ..
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 456789999999999988766544 6789999999999999998766421 1 000 00
Q ss_pred cccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 177 SCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 177 ~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
.......+....+.+.+. .+++=+||+|++... ...+.+...+....+.+.+|++|.+.
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 93 AASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred ccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 000111222334444432 124458899998765 33555544443334466777777543
No 134
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.0075 Score=64.19 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=71.4
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhh--------------------h-------c--
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAK--------------------K-------I-- 171 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~--------------------~-------f-- 171 (793)
...++|.+...+.+.+.+..+.+. .+-++|+.|+||||+|..+.+..- . +
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 345789999999999988877665 588999999999999988765331 0 1
Q ss_pred -------eeccccccC-------ChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEe
Q 043214 172 -------SFLMRSCLQ-------SESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMT 231 (793)
Q Consensus 172 -------q~~~~~~~~-------~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivT 231 (793)
.+....... -..+.++.+.+++. .+++-++|+||+.... ..+.+...+..-.+++.+|++
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~ 177 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLV 177 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 011100010 11233445555543 2456789999998763 344443333333346678888
Q ss_pred ecCCC
Q 043214 232 ARNPD 236 (793)
Q Consensus 232 TR~~~ 236 (793)
|.+..
T Consensus 178 t~~~~ 182 (365)
T PRK07471 178 SHAPA 182 (365)
T ss_pred ECCch
Confidence 87765
No 135
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.72 E-value=0.0041 Score=67.22 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--ceeccccccCChHHHHHHHHHHHh--cCCeEEEEE
Q 043214 128 RMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRSCLQSESRRARRLCERLK--KEKKILVIL 203 (793)
Q Consensus 128 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~~~~~~~~~~~~l~~~l~--~~kr~LlVL 203 (793)
|..-..++.+.+..... ++.|+|+-++||||+++.+...... +.+.......+..+..+.+..... ..++.+++|
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifL 100 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFL 100 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEE
Confidence 34445666666554333 9999999999999999777665432 111111111111122222222221 115689999
Q ss_pred eCCCcccCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 204 DNIWASLDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 204 Ddv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
|.|.....|+.....+.+.++. +|++|+-+..
T Consensus 101 DEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ 132 (398)
T COG1373 101 DEIQNVPDWERALKYLYDRGNL-DVLITGSSSS 132 (398)
T ss_pred ecccCchhHHHHHHHHHccccc-eEEEECCchh
Confidence 9999999999987888777777 8999987665
No 136
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.71 E-value=0.0042 Score=56.48 Aligned_cols=68 Identities=29% Similarity=0.243 Sum_probs=42.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-----ceeccc------------------cccCChHHHHHHHHHHHhcCCeEEE
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-----ISFLMR------------------SCLQSESRRARRLCERLKKEKKILV 201 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-----fq~~~~------------------~~~~~~~~~~~~l~~~l~~~kr~Ll 201 (793)
..+.|+|.+|+||||+|+.+.+.... +-+... ............+.+.....+..+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 57899999999999999999876543 111100 0111223334455555554234899
Q ss_pred EEeCCCcccCc
Q 043214 202 ILDNIWASLDF 212 (793)
Q Consensus 202 VLDdv~~~~~~ 212 (793)
++|++......
T Consensus 83 iiDei~~~~~~ 93 (148)
T smart00382 83 ILDEITSLLDA 93 (148)
T ss_pred EEECCcccCCH
Confidence 99999987543
No 137
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.00034 Score=67.74 Aligned_cols=251 Identities=15% Similarity=0.102 Sum_probs=138.3
Q ss_pred hhhcccCCcEEEcCCcccCC--C----cccccCCcccEEEecCCC---Cc-ccCh-------hcccCCCCCEEecCCCcC
Q 043214 489 SLCLLSNLQTLCLDYGVFGD--V----SIIGELKTLEILSFQGSN---IE-EFPR-------EIGQLTRLRLLNLAYCNL 551 (793)
Q Consensus 489 ~i~~l~~L~~L~L~~~~~~~--~----~~i~~l~~L~~L~l~~~~---l~-~lp~-------~i~~L~~L~~L~l~~~~~ 551 (793)
.+..+..+..++|++|.+.. . ..|.+-.+|+..+++.-. .. ++|. .+-++++|+..++++|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 44557889999999998765 2 456667888888887632 22 4444 345778999999999887
Q ss_pred ccccChh---hhcCCCCcceeeccccccceeecccccccCc------ccHHHhcCCCCCcEEEEEeccCCccCccccccc
Q 043214 552 LKVIPSN---VLSSLSRLEELYMGYTFVEWEIEGLNNVRSK------ASLHELKQLSYLTNLEIQIQDANVLPKGLLSKK 622 (793)
Q Consensus 552 ~~~~p~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~ 622 (793)
....|+. .+++-+.|.+|.+.+|.+.. +.| ..-+ +..+...+-+.|+...+..|++...+....-..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG---~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP-IAG---GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCc-cch---hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 6666654 25777889999888776521 111 0001 112233455677777777676665554331111
Q ss_pred ccEEEEEecCccCcccccCCceEEEeecCCcccchhh--H---HHhhcCCcEEEeccccCcccccccc--ccCCCCCCCc
Q 043214 623 LKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDD--V---FMQMKGIEELYLDEMRGVKNIVYDL--DREGFPKLKH 695 (793)
Q Consensus 623 L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~--~---~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~ 695 (793)
+..+.+|+.+++..|.+..-.-. + ...+.+|+.|+|.+|.....-...+ .....+.|+.
T Consensus 181 --------------l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 181 --------------LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred --------------HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 11234556666655444321100 0 1235777777777765432211111 1134567788
Q ss_pred eEeecCCCcceeccc-cCccCCccCcccceeecccccc----cccccccccccccCCCCCeeeeccC
Q 043214 696 PQIQNNPYFLYVIDS-VKHVPRDAFRALESLSLSNLIN----LEKICHGKLKAESFCKLTTLKVKSC 757 (793)
Q Consensus 696 L~l~~~~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~L~~L~l~~C 757 (793)
|.+.+|---..-.+. ...+....+|+|..|...+... +..+.-..+..+++|-|..|.+.++
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 887777422111110 1112344567777777665211 1111111345567777777777766
No 138
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.016 Score=62.37 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=68.1
Q ss_pred cccccccHHHHHHHHHHhCCCC----------ceEEEEEecCCChHHHHHHHHHhhhhh----------------c----
Q 043214 122 YEAFESRMSTLNDVLNALNNPN----------VNMIGVYGMAGVGKTKLVKEAPRLAKK----------------I---- 171 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~----------------f---- 171 (793)
+..++|.+..++.+.+.+..+. ..-+-++|+.|+||||+|+.+.+..-- |
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4567888888888888887542 346889999999999999998764210 1
Q ss_pred ----eeccccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 172 ----SFLMRSCLQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 172 ----q~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.+..........+.++.+.+... .+++-++|+|++.... ..+.+...+..-.++..+|++|.+..
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~ 158 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPE 158 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChH
Confidence 00000001111223344444442 1344578889998763 33444344433345677777777654
No 139
>PRK09183 transposase/IS protein; Provisional
Probab=96.68 E-value=0.0042 Score=63.00 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+.|+|.+|+|||+||.++.+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999997654
No 140
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.67 E-value=0.0022 Score=64.17 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=24.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..-+.++|+|.+|+|||||++++|+....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34578999999999999999999987643
No 141
>PRK06526 transposase; Provisional
Probab=96.67 E-value=0.0051 Score=61.96 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..-+.|+|.+|+|||+||.++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 45689999999999999999977644
No 142
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0083 Score=67.81 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=69.8
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh----------------------ceec---
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK----------------------ISFL--- 174 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~----------------------fq~~--- 174 (793)
.+..++|.+..++.|.+++..+.+ ..+-++|..|+||||+|+.+.+..-- +.-+
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 356688988888888888886665 46689999999999999998654310 0000
Q ss_pred --ccccc--CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 175 --MRSCL--QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 175 --~~~~~--~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
...+. ....+.++.+.+... .++.=++|||+|... ..++.+...+..-....++|++|.+.
T Consensus 94 D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 94 DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 00010 111222333434332 234458899999876 34666655554434456777776543
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.65 E-value=0.0058 Score=72.55 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=62.0
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------c--eecccc----ccCC
Q 043214 120 WCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------I--SFLMRS----CLQS 181 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------f--q~~~~~----~~~~ 181 (793)
....+++||+.++.++++.|......-+.++|.+|+||||+|+.+.+.... + +++.-. ....
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence 345789999999999999888655556679999999999999999987632 1 111111 1111
Q ss_pred hHHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 043214 182 ESRRARRLCERLK-KEKKILVILDNIWAS 209 (793)
Q Consensus 182 ~~~~~~~l~~~l~-~~kr~LlVLDdv~~~ 209 (793)
.....+.+.+.+. .+++..|++|++...
T Consensus 264 ~e~~lk~ii~e~~~~~~~~ILfIDEih~l 292 (852)
T TIGR03345 264 FENRLKSVIDEVKASPQPIILFIDEAHTL 292 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeChHHh
Confidence 2244555555554 346899999998764
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.65 E-value=0.058 Score=64.69 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=36.3
Q ss_pred ccccccHHHHHHHHHHhCC---------CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 123 EAFESRMSTLNDVLNALNN---------PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..++|.+..++.+.+.+.. ....++.++|..|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578888888888877751 124578899999999999999998754
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.64 E-value=0.0062 Score=72.82 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=60.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------c--eecccc----ccCCh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------I--SFLMRS----CLQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------f--q~~~~~----~~~~~ 182 (793)
...+++||+.++.+++..|....-.-+.++|.+|+|||++|..+.++... + +++.-. .....
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~ 250 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEF 250 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhH
Confidence 45679999999999999887555556668999999999999998876532 1 111110 01112
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLK-KEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~-~~kr~LlVLDdv~~~ 209 (793)
......+.+.+. .+++.+|++|++...
T Consensus 251 e~~l~~~l~~~~~~~~~~ILfIDEih~l 278 (852)
T TIGR03346 251 EERLKAVLNEVTKSEGQIILFIDELHTL 278 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeccHHHh
Confidence 234455555553 236799999999754
No 146
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.012 Score=66.67 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=70.9
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh---c------------eec-------ccc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK---I------------SFL-------MRS 177 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---f------------q~~-------~~~ 177 (793)
.+..++|.+..++.|.+.+..+.+. .+-++|..|+||||+|+.+.+..-- + ++. ...
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 3567889999999888888876654 4679999999999999998775422 0 000 001
Q ss_pred cc--CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 178 CL--QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 178 ~~--~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+. ....+..+.+.+.+. .+++-++|+|++... ...+.+...+..-....++|++|.+..
T Consensus 94 daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 94 DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 11 111223344444432 246668999999876 345555444433334556666666554
No 147
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.02 Score=60.68 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=38.8
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...++|.+...+.+...+..+.+. .+-|+|..|+||||+|..+.+..
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 456789999999999988866544 68999999999999999887653
No 148
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.014 Score=68.61 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=71.6
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------ceec----c---c
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------ISFL----M---R 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq~~----~---~ 176 (793)
+..++|.+..++.|...+..+.+. .+-++|..|+||||+|+.+.+...- +..+ . .
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 556889999899999988876665 4789999999999999999776531 0000 0 0
Q ss_pred ccc--CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 177 SCL--QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 177 ~~~--~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
++. ....+.++.+++.+. .+++=++|||++... ...+.|...+..-...+.+|++|.+.+
T Consensus 94 idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 94 IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 111 111233334444332 224447889999876 345566555544445667777765443
No 149
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.58 E-value=0.0024 Score=63.06 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=50.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh----ce---ec-cccc----cCChHHHHHHHHHHHhcCCeEEEEEeCCCccc-
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK----IS---FL-MRSC----LQSESRRARRLCERLKKEKKILVILDNIWASL- 210 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq---~~-~~~~----~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~- 210 (793)
...+-|+|..|.|||.|.+++++.... .+ +. ..+. ..-.......+++.+.. -=+|++||+....
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~--~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRS--ADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCT--SSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhc--CCEEEEecchhhcC
Confidence 456889999999999999999987653 11 00 0000 00000122345555543 3489999997752
Q ss_pred --Ccch-hcCCCCC-CCCCcEEEEeecCCC
Q 043214 211 --DFEK-VGIPFGD-NHKGCKVLMTARNPD 236 (793)
Q Consensus 211 --~~~~-l~~~~~~-~~~gs~IivTTR~~~ 236 (793)
.|+. +...+.. ...|.+||+|++...
T Consensus 112 ~~~~q~~lf~l~n~~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 112 KQRTQEELFHLFNRLIESGKQLILTSDRPP 141 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEESS-T
T ss_pred chHHHHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence 2322 1111111 235778999997543
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.54 E-value=0.083 Score=63.16 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=53.7
Q ss_pred ccccccHHHHHHHHHHhC-------C--CCceEEEEEecCCChHHHHHHHHHhhhh----h---ceeccccccCCh----
Q 043214 123 EAFESRMSTLNDVLNALN-------N--PNVNMIGVYGMAGVGKTKLVKEAPRLAK----K---ISFLMRSCLQSE---- 182 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~---fq~~~~~~~~~~---- 182 (793)
..++|-+..++.+.+.+. + ....++-++|+.|+|||+||+.+.+..- . |..+.-......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 457788888888877664 1 1234677999999999999999987541 1 211110000000
Q ss_pred --------HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 --------SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 --------~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.+....+.+.+.....-+|+||++...
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 011234566666534458999999876
No 151
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.042 Score=60.98 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=55.9
Q ss_pred cccccHHHHHHHHHHhC------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc--ccccC-------Ch-HHH
Q 043214 124 AFESRMSTLNDVLNALN------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM--RSCLQ-------SE-SRR 185 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~--~~~~~-------~~-~~~ 185 (793)
.-+|.++-+++|++++- +.+-.+++.+|++|+|||++|+.|+..... | .++. -.+.. +. ...
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAM 491 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAM 491 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccC
Confidence 44688888999999875 345579999999999999999999987765 3 2222 11110 00 001
Q ss_pred HHHHHHHHhc--CCeEEEEEeCCCcc
Q 043214 186 ARRLCERLKK--EKKILVILDNIWAS 209 (793)
Q Consensus 186 ~~~l~~~l~~--~kr~LlVLDdv~~~ 209 (793)
-.++.+.|+. -.+=|+.||.|+..
T Consensus 492 PGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 492 PGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred ChHHHHHHHhhCCCCceEEeehhhhh
Confidence 1344455542 13568999999754
No 152
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.50 E-value=0.032 Score=63.40 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=39.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+..++|.+..++.+.+.+..+.+. .+-++|..|+||||+|+.+.+..
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889998888888888766664 48899999999999999887654
No 153
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.49 E-value=0.0055 Score=60.96 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=70.0
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh---cee-------ccccccCChHH---HHHH
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK---ISF-------LMRSCLQSESR---RARR 188 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---fq~-------~~~~~~~~~~~---~~~~ 188 (793)
+..+.|-+..++.+.+.+......+.-.+|++|.|||+-|.++....-. |.- +......-..+ ...+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fak 114 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAK 114 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHH
Confidence 4567788888888888887778889999999999999999888765322 210 00000000000 0111
Q ss_pred HHHHHh-----cCCe-EEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 189 LCERLK-----KEKK-ILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 189 l~~~l~-----~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
+..... .-+. =.+|||+++.. +.|..+...+.+...-+|.|+.|-..
T Consensus 115 l~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 115 LTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred HhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 111110 0122 36899999987 67988877766666667755554433
No 154
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.016 Score=65.12 Aligned_cols=115 Identities=16% Similarity=0.272 Sum_probs=70.3
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------ce-------eccc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------IS-------FLMR 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq-------~~~~ 176 (793)
+..++|.+..++.+..++..+.+. .+-++|..|+||||+|+.+.+..-- +. +...
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 456789999899998888876665 5689999999999999998765421 00 0000
Q ss_pred cccCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 177 SCLQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 177 ~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.......+..+.+.+... .+++-++|+|++.... ..+.+...+..-...+.+|++|.+..
T Consensus 95 ~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 95 AASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred ccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 001111222334444332 2356689999998763 35555444433344667777765443
No 155
>PRK08116 hypothetical protein; Validated
Probab=96.45 E-value=0.0023 Score=65.15 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=48.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh------ce--------eccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcc-
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK------IS--------FLMRSCLQSESRRARRLCERLKKEKKILVILDNIWAS- 209 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~------fq--------~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~- 209 (793)
.-+.++|..|+|||.||.++++.... |- +...+.... ......+.+.+.+ - =||||||+...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~l~~-~-dlLviDDlg~e~ 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRSLVN-A-DLLILDDLGAER 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHHhcC-C-CEEEEecccCCC
Confidence 35889999999999999999997643 10 000001000 1112234444543 2 28999999533
Q ss_pred -cCcch--hcCCCCC-CCCCcEEEEeec
Q 043214 210 -LDFEK--VGIPFGD-NHKGCKVLMTAR 233 (793)
Q Consensus 210 -~~~~~--l~~~~~~-~~~gs~IivTTR 233 (793)
.+|.. +...+.. ..+|..+||||.
T Consensus 192 ~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 192 DTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 34432 2111111 234667999996
No 156
>CHL00181 cbbX CbbX; Provisional
Probab=96.45 E-value=0.014 Score=60.07 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+.++|.+|.||||+|+.+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998764
No 157
>PRK06696 uridine kinase; Validated
Probab=96.43 E-value=0.0041 Score=61.75 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHhC---CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 127 SRMSTLNDVLNALN---NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 127 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|.+.+++|.+.+. .+...+|+|.|.+|.||||||+.+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35666777777664 4567899999999999999999987754
No 158
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.037 Score=62.42 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=70.0
Q ss_pred cccccccHHHHHHHHHHhCCCCceE-EEEEecCCChHHHHHHHHHhhhhh-----c----------eec------c---c
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNM-IGVYGMAGVGKTKLVKEAPRLAKK-----I----------SFL------M---R 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~-----f----------q~~------~---~ 176 (793)
+..++|.+..++.|..++..+.+.- +-++|..|+||||+|+.+.+..-- . .+. . .
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvie 91 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVE 91 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEE
Confidence 5567899998999999988776664 689999999999999998865431 0 000 0 0
Q ss_pred ccc--CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 177 SCL--QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 177 ~~~--~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
.+. ....+.++.+.+.+. .+++=++|+|++... ...+.|...+..-.....+|++|.+.
T Consensus 92 idaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 92 LDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred eccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 111 111233334444332 234458899999765 34555555554444566666666433
No 159
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.42 E-value=0.0042 Score=64.68 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=39.3
Q ss_pred cccccHHHHHHHHHHhC------CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 124 AFESRMSTLNDVLNALN------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.++|.++.++++++++. ...-+++.++|.+|.||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57899999999999886 234579999999999999999999886544
No 160
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.39 E-value=0.033 Score=57.41 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-+.++|.+|.||||+|+.+++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999988876543
No 161
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.38 E-value=0.018 Score=55.60 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=57.7
Q ss_pred HHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh---c----------------------eeccccccCChHHHHH
Q 043214 134 DVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK---I----------------------SFLMRSCLQSESRRAR 187 (793)
Q Consensus 134 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~---f----------------------q~~~~~~~~~~~~~~~ 187 (793)
.+.+.+..+.+ ..+-++|..|+||||+|+.+.+..-. . -.-.........+.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 34455555555 57899999999999999998776421 0 0000000011123333
Q ss_pred HHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeec
Q 043214 188 RLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 188 ~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR 233 (793)
.+.+.+. .+.+-++|+||+.... .++.+...+....+.+.+|++|+
T Consensus 83 ~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 83 ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 3344432 1355689999997652 35556555544445667777776
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.35 E-value=0.14 Score=61.37 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=35.2
Q ss_pred ccccccHHHHHHHHHHhC-------C--CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 123 EAFESRMSTLNDVLNALN-------N--PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..++|.+..++.+...+. + ....++.++|..|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356788888777777664 1 123578999999999999999998754
No 163
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.32 E-value=0.0089 Score=69.59 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=59.0
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------ceecc--ccc----cCCh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------ISFLM--RSC----LQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------fq~~~--~~~----~~~~ 182 (793)
...+++||++++.++++.|......-+-++|.+|+|||++|+.+++.... |.+.. ... ....
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~ 263 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhH
Confidence 45789999999999999887543344568999999999999999876422 11100 000 1122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.+.+...+..+|++|++..
T Consensus 264 e~rl~~l~~~l~~~~~~ILfIDEIh~ 289 (758)
T PRK11034 264 EKRFKALLKQLEQDTNSILFIDEIHT 289 (758)
T ss_pred HHHHHHHHHHHHhcCCCEEEeccHHH
Confidence 33445555555544668999999974
No 164
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00029 Score=68.45 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=39.0
Q ss_pred cCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccCh-hhhcCCCCcceeecc
Q 043214 494 SNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPS-NVLSSLSRLEELYMG 572 (793)
Q Consensus 494 ~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~ 572 (793)
.+.+.|++-+|.+.++....+++.|++|.|+-|+|+.|.+ +..+++|+.|+|..|.+ ..+.. ..+.++++|++|.+.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhc
Confidence 3444455555555555445555555555555555555532 45555555555555432 11111 113455555555555
Q ss_pred ccc
Q 043214 573 YTF 575 (793)
Q Consensus 573 ~~~ 575 (793)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 544
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.024 Score=57.79 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=60.8
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-ee-ccccc---cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SF-LMRSC---LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~-~~~~~---~~~~ 182 (793)
|..+.|-++.+++|.+... =+.++=|-+||++|.|||-||++|+|+-.. | .+ +..+- ...-
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEG 229 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEG 229 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccc
Confidence 5567788988888888765 135677889999999999999999998766 4 11 10000 0111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+++.-+.+....|++|.++.
T Consensus 230 aRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEEechhh
Confidence 34455666666677889999999863
No 166
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.0035 Score=56.24 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
--|+|.||+|+||||+++.+.+..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 46899999999999999999987765
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.26 E-value=0.01 Score=64.00 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=55.4
Q ss_pred cccccccHHHHHHHHHHhC----C---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccCC
Q 043214 122 YEAFESRMSTLNDVLNALN----N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQS 181 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~~ 181 (793)
+..+.|.+..++++.+.+. . ...+-|.++|.+|.|||+||+++++.... | .+. ..... .
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g-e 222 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG-E 222 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc-h
Confidence 4457788887777766543 1 23567899999999999999999987655 2 111 01111 1
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.......+.+........+|+||+++.
T Consensus 223 ~~~~lr~lf~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 223 GPRMVRDVFRLARENAPSIIFIDEVDS 249 (398)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECHhh
Confidence 122334445554445679999999864
No 168
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.03 Score=63.05 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=68.1
Q ss_pred cccccccHHHHHHHHHHhCCCC-ceEEEEEecCCChHHHHHHHHHhhhhh--------c----------e-ec---cccc
Q 043214 122 YEAFESRMSTLNDVLNALNNPN-VNMIGVYGMAGVGKTKLVKEAPRLAKK--------I----------S-FL---MRSC 178 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~--------f----------q-~~---~~~~ 178 (793)
+..++|.+..++.|.+.+..+. ...+-++|..|+||||+|+.+.+..-- + . .. ...+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 4557788887788888777655 457788999999999999998775421 0 0 00 0011
Q ss_pred c--CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 179 L--QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 179 ~--~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
. ....+.++.+.+.+. .+++-+||+|++... ...+.|...+..-.....+|++|....
T Consensus 95 ~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 95 GASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred cccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 0 111223334444332 235668999999876 335555444433234556666665443
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.24 E-value=0.022 Score=55.68 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=54.5
Q ss_pred cccccccHHHHHHHHH----HhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-----ceeccccccCChHHHHHHHHHH
Q 043214 122 YEAFESRMSTLNDVLN----ALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-----ISFLMRSCLQSESRRARRLCER 192 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----fq~~~~~~~~~~~~~~~~l~~~ 192 (793)
...++|-+..++.+++ ++......-+-+||..|.|||++++++.+.... +|+. ...-.....+.+.
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~-----k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS-----KEDLGDLPELLDL 100 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC-----HHHhccHHHHHHH
Confidence 3446677777666654 444555567788999999999999999887655 1211 1111223455555
Q ss_pred Hh-cCCeEEEEEeCCCcc
Q 043214 193 LK-KEKKILVILDNIWAS 209 (793)
Q Consensus 193 l~-~~kr~LlVLDdv~~~ 209 (793)
+. ...||+|++||..=.
T Consensus 101 l~~~~~kFIlf~DDLsFe 118 (249)
T PF05673_consen 101 LRDRPYKFILFCDDLSFE 118 (249)
T ss_pred HhcCCCCEEEEecCCCCC
Confidence 54 236899999998644
No 170
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.027 Score=62.59 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=68.7
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----c----------------eec-cccc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----I----------------SFL-MRSC 178 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----f----------------q~~-~~~~ 178 (793)
+..++|.+...+.+...+..+.+. ++-++|..|.||||+|+.+.+..-. . ... ...+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 456789888888898888866665 5689999999999999988765410 0 000 0001
Q ss_pred cCC--hHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 179 LQS--ESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 179 ~~~--~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
..+ ..+.+..+.+... .+++=++|+|++... ...+.+...+..-.+.+++|++|.+..
T Consensus 93 aas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~ 158 (535)
T PRK08451 93 AASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPL 158 (535)
T ss_pred cccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChh
Confidence 111 1122222222221 135568899999776 334555444433345677777776543
No 171
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.19 E-value=0.01 Score=58.51 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.-.++|+|..|.|||||+..+......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 347889999999999999998766544
No 172
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.12 E-value=0.0059 Score=60.20 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|.|-||+||||++..+...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~ 23 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAA 23 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999998887664
No 173
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.11 E-value=0.017 Score=68.14 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=53.9
Q ss_pred ccccccHHHHHHHHHHhC-------C--CCceEEEEEecCCChHHHHHHHHHhhhhh----ceeccccccCC--------
Q 043214 123 EAFESRMSTLNDVLNALN-------N--PNVNMIGVYGMAGVGKTKLVKEAPRLAKK----ISFLMRSCLQS-------- 181 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq~~~~~~~~~-------- 181 (793)
..++|.+..++.+.+.+. + ....++-++|+.|+|||+||+.+++.... |+.+.......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 346677777777777654 1 12457899999999999999999886643 22111000000
Q ss_pred ----hHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 182 ----ESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 182 ----~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
-.+....+.+.+.....-+|+||++...
T Consensus 534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 0111234555665545569999999876
No 174
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.037 Score=53.67 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=57.1
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-e-eccccc---cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-S-FLMRSC---LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q-~~~~~~---~~~~ 182 (793)
+..+.|-.+.++++.+... -+.+.-|-.+|++|.|||-+|++|+|+-.. | . ++...- ...-
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgeg 255 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhh
Confidence 3456677777888777543 134567889999999999999999998766 4 1 111110 0111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCC
Q 043214 183 SRRARRLCERLKKEKKILVILDNIW 207 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~ 207 (793)
.....++++--+.+|-++|++|.++
T Consensus 256 armvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 256 ARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHHHHhcccceEEEEeeccc
Confidence 2344556666667788999999985
No 175
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.10 E-value=0.0069 Score=62.61 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|+|-||+||||+|..+...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999999887664
No 176
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.10 E-value=0.068 Score=57.62 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|.++|..|+||||+|.+++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998877643
No 177
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.017 Score=62.81 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=61.2
Q ss_pred cccccccHHHHHHHHHHhC---C---------CCceEEEEEecCCChHHHHHHHHHhhhhh--ceecccc----ccCChH
Q 043214 122 YEAFESRMSTLNDVLNALN---N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRS----CLQSES 183 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~----~~~~~~ 183 (793)
+..+.|.+..+.++.+.+. . ...+=|-++|++|-|||.||+++++.... |++.... -....+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE 268 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE 268 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccH
Confidence 4567788888777766554 1 23567889999999999999999999887 4433221 011224
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 184 RRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 184 ~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
+.+.++++.-.+.-.+++++|+++-
T Consensus 269 kkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 269 KKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred HHHHHHHHHHhccCCeEEEeecccc
Confidence 5566666666666789999999974
No 178
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.01 E-value=0.0084 Score=62.30 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=22.8
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
+.+.+||++.|-||+||||.|..+..
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 56789999999999999999887655
No 179
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.048 Score=60.03 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=68.6
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh------------------ceecc-----c
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK------------------ISFLM-----R 176 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~------------------fq~~~-----~ 176 (793)
.+..++|.+..++.+.+.+..+.+ ..+-++|..|+||||+|+.+.+..-. +..+. .
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 356688999999999988886665 46789999999999999998765421 00000 0
Q ss_pred ccc--CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecC
Q 043214 177 SCL--QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARN 234 (793)
Q Consensus 177 ~~~--~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~ 234 (793)
.+. ....+.+..+.+.+. .+++-++|+|++... ...+.+...+........+|++|..
T Consensus 95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~ 160 (451)
T PRK06305 95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160 (451)
T ss_pred eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCC
Confidence 010 111123333444332 135567899998765 2344454444333346667777643
No 180
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.074 Score=60.09 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=69.9
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh------c---------ee--c--cc---cc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK------I---------SF--L--MR---SC 178 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~------f---------q~--~--~~---~~ 178 (793)
+..++|.+..++.+..++..+.+. .+-++|..|+||||+|+.+.+..-. + ++ + .. .+
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~id 94 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEID 94 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEec
Confidence 556889999999999988866555 5889999999999999999875421 0 00 0 00 11
Q ss_pred cC--ChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecC
Q 043214 179 LQ--SESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARN 234 (793)
Q Consensus 179 ~~--~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~ 234 (793)
.. ...+.+..+.+.+. .+++=++|+|++.... .++.+...+..-.+...+|++|..
T Consensus 95 gas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 95 GASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred CcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 11 11223333443322 2345578999997763 466665555443456666666643
No 181
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.99 E-value=0.0069 Score=62.48 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+.|+|+|-||+||||+|..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 47899999999999998887653
No 182
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.0043 Score=60.47 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=41.4
Q ss_pred ccCCcEEEcCCcccCCCcccccCCcccEEEecCC--CCc-ccChhcccCCCCCEEecCCCcC--ccccChhhhcCCCCcc
Q 043214 493 LSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGS--NIE-EFPREIGQLTRLRLLNLAYCNL--LKVIPSNVLSSLSRLE 567 (793)
Q Consensus 493 l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~--~~~~p~~~i~~l~~L~ 567 (793)
+..|++|++.++.++....+..|++|++|.++.| .+. .++....++++|++|++++|+. +..+++ +..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 3444555555555544555555556666666665 333 4444444556666666666543 123333 34555555
Q ss_pred eeeccccc
Q 043214 568 ELYMGYTF 575 (793)
Q Consensus 568 ~L~l~~~~ 575 (793)
.|+++.|.
T Consensus 120 ~Ldl~n~~ 127 (260)
T KOG2739|consen 120 SLDLFNCS 127 (260)
T ss_pred hhhcccCC
Confidence 55555553
No 183
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.97 E-value=0.0037 Score=60.89 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=27.4
Q ss_pred CCCcceEEEecCC--cCC-CCChhhhcccCCcEEEcCCcccCC---CcccccCCcccEEEecCCCCc
Q 043214 469 GMTELRVLDFVAM--HLP-SLPSSLCLLSNLQTLCLDYGVFGD---VSIIGELKTLEILSFQGSNIE 529 (793)
Q Consensus 469 ~~~~Lr~L~l~~~--~~~-~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~ 529 (793)
.+++|+.|.++.| ++. .++.....+++|++|++++|.+.. +..+..+.+|..|++..|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3444444555444 222 233333344555555555554433 233334444555555555333
No 184
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.96 E-value=0.023 Score=63.57 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+.|+|..|.|||.|++++.+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998754
No 185
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.96 E-value=0.0029 Score=60.11 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=21.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..-+.++|..|+|||.||.++.+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 35699999999999999999987654
No 186
>PRK06547 hypothetical protein; Provisional
Probab=95.95 E-value=0.01 Score=55.90 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 134 DVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 134 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+...+......+|+|.|.+|.||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567788999999999999999999987643
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.05 Score=62.37 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=56.1
Q ss_pred ccccccHHHHHHHHHHhC---------CCCceEEEEEecCCChHHHHHHHHHhhhh----h---ceeccccccCChH---
Q 043214 123 EAFESRMSTLNDVLNALN---------NPNVNMIGVYGMAGVGKTKLVKEAPRLAK----K---ISFLMRSCLQSES--- 183 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~---fq~~~~~~~~~~~--- 183 (793)
..++|-+..++.+.+.+. ...+++.-.+|+.|+|||-||+++....- . |.++.-....+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHh
Confidence 357899999888888765 23457888999999999999999876432 1 3211111111110
Q ss_pred ---------HHHHHHHHHHhcCCeE-EEEEeCCCcc
Q 043214 184 ---------RRARRLCERLKKEKKI-LVILDNIWAS 209 (793)
Q Consensus 184 ---------~~~~~l~~~l~~~kr~-LlVLDdv~~~ 209 (793)
+....+-+.+++ |.| .|.||+|...
T Consensus 571 GaPPGYVGyeeGG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 571 GAPPGYVGYEEGGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred CCCCCCceeccccchhHhhhc-CCCeEEEechhhhc
Confidence 113456667776 556 8889999876
No 188
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.95 E-value=0.016 Score=60.13 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=43.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhhh-c-e-----eccccccCChHHHHHHHHHHH-----hcCCeEEEEEeCCCc
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-S-----FLMRSCLQSESRRARRLCERL-----KKEKKILVILDNIWA 208 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q-----~~~~~~~~~~~~~~~~l~~~l-----~~~kr~LlVLDdv~~ 208 (793)
.-+..++|||.+|.|||.+|+++++.... | . +...+..+++ ..+.++.+.- ..++.+.|++||++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsE-k~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPG-KLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHH-HHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 45679999999999999999999998766 2 2 2222222222 2222322221 134789999999874
No 189
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.036 Score=62.87 Aligned_cols=113 Identities=15% Similarity=0.249 Sum_probs=69.6
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh----------------------ce-----
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK----------------------IS----- 172 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~----------------------fq----- 172 (793)
.+..++|.+..++.|.+.+..+.+. -+-++|..|+||||+|+.+.+..-- |.
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 3566889999999999988866654 6889999999999999998775321 00
Q ss_pred -e-ccccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeec
Q 043214 173 -F-LMRSCLQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 173 -~-~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR 233 (793)
+ ..........+.++.+.+.+. .+++=++|+|++.... ..+.+...+..-.+.+.+|++|.
T Consensus 102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 0 000001111223334444432 1234468999997663 35555555544445677777664
No 190
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.91 E-value=0.034 Score=61.13 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-+.|+|..|+|||.||+++++...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4589999999999999999998754
No 191
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.096 Score=59.95 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=69.6
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh------c----------ee----ccc---c
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK------I----------SF----LMR---S 177 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~------f----------q~----~~~---~ 177 (793)
+..++|.+..++.|..++..+.+. .+-++|..|+||||+|+.+.+.... . .+ ..+ .
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i 94 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM 94 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE
Confidence 456789999899998888766554 5689999999999999999865421 0 00 000 0
Q ss_pred c--cCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 178 C--LQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 178 ~--~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
+ .....+.++.+.+.+. .+++-++|+|++... ...+.+...+......+.+|++|.+.
T Consensus 95 ~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 95 DAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1 1111223344444432 135568999999765 34555554443334566777776543
No 192
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.066 Score=61.36 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=68.6
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh------ce--------ec--cc---ccc--
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK------IS--------FL--MR---SCL-- 179 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~------fq--------~~--~~---~~~-- 179 (793)
+..++|.+..++.+...+..+.+. .+-++|+.|+||||+|+.+.+..-- +. .+ .. .+.
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas 96 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS 96 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence 456789999899999988866654 5679999999999999998764311 00 00 00 010
Q ss_pred CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 180 QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 180 ~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
....+.++.+.+.+. .+++-++|+|++... ..++.+...+..-.....+|++|...
T Consensus 97 n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 97 NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 011233444555443 235558899999765 34556554443333455556555433
No 193
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.85 E-value=0.014 Score=69.45 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=53.9
Q ss_pred ccccccHHHHHHHHHHhC---------CCCceEEEEEecCCChHHHHHHHHHhhhh----h---ceecccccc-------
Q 043214 123 EAFESRMSTLNDVLNALN---------NPNVNMIGVYGMAGVGKTKLVKEAPRLAK----K---ISFLMRSCL------- 179 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~---fq~~~~~~~------- 179 (793)
..++|.+..++.+.+.+. .....++.++|+.|+|||.||+++.+..- . |.++.....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 457788888888887764 12345899999999999999998876541 1 111100000
Q ss_pred -----CChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 180 -----QSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 180 -----~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.-..+....+.+.++....-+|+||++...
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 000011123455565556679999999765
No 194
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.073 Score=60.61 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=68.8
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------ceecc-----cc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------ISFLM-----RS 177 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq~~~-----~~ 177 (793)
.+..++|.+..++.+.+.+..+.+. .+-++|..|+||||+|+.+.+..-- |.-+. ..
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 3566889998889999888876664 5689999999999999998765321 10000 01
Q ss_pred c--cCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeec
Q 043214 178 C--LQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 178 ~--~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR 233 (793)
+ .....+.++.+.+.+. .+++=++|+|+|.... ..+.+...+..-.....+|++|.
T Consensus 94 d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 94 DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 1 1111233445555443 1244478899997653 34555444433334566766664
No 195
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.84 E-value=0.0028 Score=71.43 Aligned_cols=146 Identities=19% Similarity=0.098 Sum_probs=82.5
Q ss_pred ccCCceEEEeecCCcccc--hhhHHHhhcCCcEEEeccc-cCccccc--cccccCCCCCCCceEeecCCCcceeccccCc
Q 043214 639 QLQNSRILKLKLNNSTWL--KDDVFMQMKGIEELYLDEM-RGVKNIV--YDLDREGFPKLKHPQIQNNPYFLYVIDSVKH 713 (793)
Q Consensus 639 ~~~~L~~L~l~~~~~~~~--p~~~~~~l~~L~~L~L~~~-~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 713 (793)
.+++|+.|.+.+.....- -..+...+++|+.|++.+| ......+ .......+++|+.|++..|..+.... ..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~---l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG---LS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh---HH
Confidence 367777777766433322 1223344688888888773 3222222 11122456888888888876533210 00
Q ss_pred cCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccc---cchhh
Q 043214 714 VPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIAC---KNMKE 788 (793)
Q Consensus 714 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C---~~l~~ 788 (793)
.....+|+|+.|.+.+|..+++-.- ..-...+++|++|+|++|..+++..-.....++++|+.+.+..+ +.++.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHH
Confidence 1122367888888888876544311 11224577888888888888755322234556777777665444 44554
No 196
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.81 E-value=0.0095 Score=61.36 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|+|-||+||||+|..+...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~ 24 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAG 24 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHH
Confidence 58999999999999998886653
No 197
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.80 E-value=0.0094 Score=61.36 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|+|-||+||||+|..+...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~ 24 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAA 24 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999998887653
No 198
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.78 E-value=0.013 Score=61.76 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=23.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-+.++|+|.+|.|||||++++++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 35789999999999999999999743
No 199
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.77 E-value=0.0084 Score=58.11 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=21.9
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
||+|.|.+|.||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999988665
No 200
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.76 E-value=0.18 Score=53.25 Aligned_cols=119 Identities=21% Similarity=0.310 Sum_probs=68.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccCc-CCCcchhhhhhHhhhhhcCcccccccH
Q 043214 54 RVDDAKRNGEDIEQKVEKWLSDVDKIMDAAGQ---IIEDEERAKNSRCFRGL-CPNLTTCYQFSKKAAKEWCYEAFESRM 129 (793)
Q Consensus 54 ~l~~~~~~~~~~~~~~~~wl~~l~~~~~~~ed---~ld~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~gr~ 129 (793)
.++....+.....+.++.-++++|-+.-+|+- ++.+|....+.+..... ...+.....+.+.+
T Consensus 12 ~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV------------- 78 (451)
T COG0541 12 ALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIV------------- 78 (451)
T ss_pred HHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHH-------------
Confidence 33433444344456777778888777766653 33333322211111111 11222223333333
Q ss_pred HHHHHHHHHhC---------CCCceEEEEEecCCChHHHHHHHHHhhhhhceeccccccCChHHHHHHHHHHHhcCCeEE
Q 043214 130 STLNDVLNALN---------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSESRRARRLCERLKKEKKIL 200 (793)
Q Consensus 130 ~~~~~l~~~l~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~~~~~~~l~~~l~~~kr~L 200 (793)
.++|++.|. ...+.||-.+|.-|.||||-|.++++..+. .+++++
T Consensus 79 --~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk------------------------~~~kvl 132 (451)
T COG0541 79 --YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK------------------------KGKKVL 132 (451)
T ss_pred --HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH------------------------cCCceE
Confidence 345555554 134689999999999999998887764332 258899
Q ss_pred EEEeCCCcccC
Q 043214 201 VILDNIWASLD 211 (793)
Q Consensus 201 lVLDdv~~~~~ 211 (793)
+|==|++....
T Consensus 133 lVaaD~~RpAA 143 (451)
T COG0541 133 LVAADTYRPAA 143 (451)
T ss_pred EEecccCChHH
Confidence 99999998843
No 201
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.75 E-value=0.014 Score=58.20 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=24.6
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.....+|+|.|..|.|||||++.+.....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35678999999999999999998877543
No 202
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.73 E-value=0.035 Score=60.74 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+.|+|..|+|||.||+++++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~ 161 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL 161 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999998764
No 203
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.73 E-value=0.0083 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.4
Q ss_pred EEEEecCCChHHHHHHHHHhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~ 168 (793)
|+|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998884
No 204
>PRK07667 uridine kinase; Provisional
Probab=95.72 E-value=0.014 Score=56.39 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=27.7
Q ss_pred HHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 133 NDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 133 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+.+.+.+. ..+..+|+|-|.+|.||||+|+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555554 3445799999999999999999987754
No 205
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.72 E-value=0.019 Score=66.86 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=53.9
Q ss_pred cccccHHHHHHHHHHhC---------CCCceEEEEEecCCChHHHHHHHHHhhhhh----ceeccccccCChH-------
Q 043214 124 AFESRMSTLNDVLNALN---------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----ISFLMRSCLQSES------- 183 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq~~~~~~~~~~~------- 183 (793)
.++|-++.++.+.+.+. ......+-++|+.|+|||++|+.+...... |+.+.........
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 46788888887777665 112457899999999999999999886643 2211110000000
Q ss_pred -----HHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 184 -----RRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 184 -----~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
+....+.+.+.....-+|+||++...
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 11123445555445569999999876
No 206
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.71 E-value=0.1 Score=56.74 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+.+|.++|.+|+||||.|..++....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999877543
No 207
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.028 Score=60.10 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=59.3
Q ss_pred cccccccHH---HHHHHHHHhCCC---------CceEEEEEecCCChHHHHHHHHHhhhhh--ce-eccccccCCh---H
Q 043214 122 YEAFESRMS---TLNDVLNALNNP---------NVNMIGVYGMAGVGKTKLVKEAPRLAKK--IS-FLMRSCLQSE---S 183 (793)
Q Consensus 122 ~~~~~gr~~---~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq-~~~~~~~~~~---~ 183 (793)
+..+-|-|+ ++++|+++|.+. =++=|-++|++|.|||-||++|+-...+ |. .+.+++..-. .
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGA 382 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGA 382 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccH
Confidence 344455554 678888888742 2467889999999999999999988777 32 3333333222 3
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 184 RRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 184 ~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.+.+.+++.-+..-.+.|.+|.++..
T Consensus 383 rRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 383 RRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhh
Confidence 34455555555556799999998654
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.67 E-value=0.0074 Score=54.81 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhhh----ceeccccccCChHHHHHHHHHHHhcCCeEE
Q 043214 127 SRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----ISFLMRSCLQSESRRARRLCERLKKEKKIL 200 (793)
Q Consensus 127 gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq~~~~~~~~~~~~~~~~l~~~l~~~kr~L 200 (793)
|+...++++.+.+. ...-.-|-|+|-.|.||+++|+.++..... |....... .. ..+.+.. +.--
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-~~-----~~~l~~a---~~gt 72 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-LP-----AELLEQA---KGGT 72 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-TC-----HHHHHHC---TTSE
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-Cc-----HHHHHHc---CCCE
Confidence 55556666666554 223356789999999999999999986543 22111000 11 2222222 3355
Q ss_pred EEEeCCCcccC--cchhcCCCC-CCCCCcEEEEeecC
Q 043214 201 VILDNIWASLD--FEKVGIPFG-DNHKGCKVLMTARN 234 (793)
Q Consensus 201 lVLDdv~~~~~--~~~l~~~~~-~~~~gs~IivTTR~ 234 (793)
|+|+|+..... -..+...+. ......|+|.||+.
T Consensus 73 L~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 73 LYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp EEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred EEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 78999987632 222222221 12457799999983
No 209
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.66 E-value=0.02 Score=63.14 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=37.1
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+..+.|.+..++++.+.+. -...+-+-++|++|.|||++|+++++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 4556788888888777653 12345689999999999999999999753
No 210
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.62 E-value=0.013 Score=60.19 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHHHh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~ 166 (793)
+|++.|-||+||||+|..+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 688889999999999888665
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.60 E-value=0.021 Score=64.23 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=51.1
Q ss_pred cccccccHHHHHHHHHHh---CC---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-cc---cCChH
Q 043214 122 YEAFESRMSTLNDVLNAL---NN---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-SC---LQSES 183 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~~---~~~~~ 183 (793)
+..+.|-+..++++.+.+ .. ...+-+-++|++|.|||+||+++++.... | .+... +. .....
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~ 133 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGA 133 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccH
Confidence 445667666555544433 21 22345889999999999999999987654 2 21110 00 00112
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 184 RRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 184 ~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.....+.+........+|+|||++.
T Consensus 134 ~~l~~~f~~a~~~~p~Il~iDEid~ 158 (495)
T TIGR01241 134 SRVRDLFEQAKKNAPCIIFIDEIDA 158 (495)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhh
Confidence 2334444444444568999999965
No 212
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.59 E-value=0.014 Score=63.30 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=54.6
Q ss_pred cccccccHHHHHHHHHHhC----C---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc-ccc---cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN----N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM-RSC---LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~-~~~---~~~~ 182 (793)
+..+.|.+..++++.+.+. . ....-+.++|.+|.|||++|+++++.... | .+.. ... ....
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~ 261 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG 261 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchH
Confidence 3456788888877777653 1 23456889999999999999999997655 3 2110 000 0011
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.+....+...+|+||+++.
T Consensus 262 ~~~vr~lF~~A~~~~P~ILfIDEID~ 287 (438)
T PTZ00361 262 PKLVRELFRVAEENAPSIVFIDEIDA 287 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEeHHHHHH
Confidence 22234444444445678999999853
No 213
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.56 E-value=0.086 Score=60.30 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=69.7
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh------------------ce------ec-c
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK------------------IS------FL-M 175 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~------------------fq------~~-~ 175 (793)
+..++|.+..++.+...+..+.+. .+-++|..|+||||+|+.+.+..-- |. +. .
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l 95 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL 95 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence 456889999999999998876665 5789999999999999988775420 10 00 0
Q ss_pred ccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 176 RSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 176 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
........+.+..+.+.+. .+++=++|+|++... ..++.+...+..-...+.+|++|..+.
T Consensus 96 d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~ 162 (614)
T PRK14971 96 DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162 (614)
T ss_pred cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCch
Confidence 0011111223333333332 123447899998776 345566555544345667666664433
No 214
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.55 E-value=0.011 Score=58.00 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988753
No 215
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.16 Score=57.59 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=68.8
Q ss_pred CcccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------ceec--cc---c
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------ISFL--MR---S 177 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq~~--~~---~ 177 (793)
.+..++|.+...+.+.+++..+.+. .+-++|..|.||||+|+.+.+..-. +.-+ .+ .
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ei 93 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEI 93 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEe
Confidence 3567889999999999888765544 5678999999999999998765421 0000 00 0
Q ss_pred c--cCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 178 C--LQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 178 ~--~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
+ .....+.++.+.+... .+++=++|+|++... ..++.+...+..-.....+|++|...
T Consensus 94 daas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 94 DAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 0 1111233444555432 235568899999865 34555544443323345556555433
No 216
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.53 E-value=0.011 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|+|.|..|.||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988763
No 217
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.51 E-value=0.05 Score=59.71 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-+.|+|..|+|||+||+++.+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998764
No 218
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.47 E-value=0.019 Score=63.11 Aligned_cols=49 Identities=16% Similarity=0.370 Sum_probs=41.6
Q ss_pred cccccccHHHHHHHHHHhC------CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 122 YEAFESRMSTLNDVLNALN------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+..++|.++.++++++.+. +..-+++.++|++|+||||||+.+.+-.+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4567899999999999883 456679999999999999999999886554
No 219
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.09 Score=58.37 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=67.1
Q ss_pred cccccccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------ce------e-ccc
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------IS------F-LMR 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq------~-~~~ 176 (793)
+..++|.+...+.+.+++..+.+. .+-++|..|+||||+|+.+....-. +. + ...
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 456789998899998888866554 4678999999999999998775421 00 0 000
Q ss_pred cccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeec
Q 043214 177 SCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 177 ~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR 233 (793)
.......+..+.+.+... .+++=++|+|++... ...+.+...+....+...+|++|.
T Consensus 95 aas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 95 AASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred CccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 001111222344444442 235669999999765 234555444433334556666553
No 220
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.0013 Score=64.07 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=67.8
Q ss_pred CCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC---CcccccCCcccE
Q 043214 444 CPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD---VSIIGELKTLEI 520 (793)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~---~~~i~~l~~L~~ 520 (793)
+.+.+.|++.++.+. .| ++..+|+.|++|.|+-|.|+++. .+..|.+|+.|.|+.|.+.+ +.-+.++++|++
T Consensus 18 l~~vkKLNcwg~~L~--DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--DI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc--HH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345566666666555 22 34578999999999999888774 47788999999999888776 455667888888
Q ss_pred EEecCCCCc-ccCh-----hcccCCCCCEEe
Q 043214 521 LSFQGSNIE-EFPR-----EIGQLTRLRLLN 545 (793)
Q Consensus 521 L~l~~~~l~-~lp~-----~i~~L~~L~~L~ 545 (793)
|.|..|.-. .-+. -+..|++|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888776322 2222 355677777775
No 221
>PRK08233 hypothetical protein; Provisional
Probab=95.44 E-value=0.012 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|+|.|.+|.||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998755
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.44 E-value=0.017 Score=59.97 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHhCC----CCceEEEEEecCCChHHHHHHHHHhhhhh------ce-ec---cccccCChHHHHHHHHHH
Q 043214 127 SRMSTLNDVLNALNN----PNVNMIGVYGMAGVGKTKLVKEAPRLAKK------IS-FL---MRSCLQSESRRARRLCER 192 (793)
Q Consensus 127 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------fq-~~---~~~~~~~~~~~~~~l~~~ 192 (793)
+|....+...+++.. ....-+-++|..|+|||.||.++++.... |- +. ......-.+.......+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~ 214 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA 214 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344444445555541 23457899999999999999999998643 10 00 000000000011233333
Q ss_pred HhcCCeEEEEEeCCCcc--cCcch--hcCCC-CCC-CCCcEEEEeec
Q 043214 193 LKKEKKILVILDNIWAS--LDFEK--VGIPF-GDN-HKGCKVLMTAR 233 (793)
Q Consensus 193 l~~~kr~LlVLDdv~~~--~~~~~--l~~~~-~~~-~~gs~IivTTR 233 (793)
+. +-=||||||+... ..|.. +...+ ... .++-.+|+||-
T Consensus 215 l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 215 VK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 43 3458999999754 44643 32222 111 24556888886
No 223
>CHL00176 ftsH cell division protein; Validated
Probab=95.41 E-value=0.037 Score=63.33 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=52.4
Q ss_pred CcccccccHHHHHHHH---HHhCCC---------CceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-cc---cCCh
Q 043214 121 CYEAFESRMSTLNDVL---NALNNP---------NVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-SC---LQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~---~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~~---~~~~ 182 (793)
.+..+.|.++.++++. +.+... -.+-|-++|.+|.|||+||+++++.... | .+... +. ....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~ 260 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG 260 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh
Confidence 3455677766554444 444321 2356899999999999999999887654 2 21110 00 0011
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.+.......++|+|||++.
T Consensus 261 ~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 261 AARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchh
Confidence 12334444444455779999999964
No 224
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.39 E-value=0.019 Score=59.09 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|.|-||+||||+|..+...
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~ 25 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAA 25 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999998887663
No 225
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.087 Score=60.28 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=68.1
Q ss_pred cccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh-------------------ce------e-c
Q 043214 122 YEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK-------------------IS------F-L 174 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------fq------~-~ 174 (793)
+..++|.+..++.|..++..+.+ ..+-++|..|+||||+|+.+++..-- +. + .
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 45678988888888888876543 56789999999999999999876421 00 0 0
Q ss_pred cccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 175 MRSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
.........+.++.+.+... .+++=++|+|++... ..++.+...+..-.....+|++|.+.
T Consensus 95 i~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 95 IDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred EeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 00011111223334443332 134458899999876 34555655543333445566665443
No 226
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.39 E-value=0.046 Score=62.12 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=38.4
Q ss_pred cccccccHHHHHHHHHHhCC-----CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLNDVLNALNN-----PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...++|.+..++++..++.. ...+++.|+|.+|.||||+++.+.....
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34577888888888888763 2335799999999999999999987654
No 227
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.015 Score=55.98 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=24.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+.+|||.|.+|.||||+|+.+++.+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999887653
No 228
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.38 E-value=0.017 Score=59.58 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=19.4
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
++|+|+|-||+||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999887665
No 229
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.36 E-value=0.015 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|.+|.||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999988754
No 230
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=95.35 E-value=0.021 Score=59.30 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=20.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
..++|+|.|-||+||||.|..+..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~ 26 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLA 26 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHH
Confidence 457899999999999999877654
No 231
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=0.15 Score=54.16 Aligned_cols=51 Identities=20% Similarity=0.140 Sum_probs=43.9
Q ss_pred cCcccccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 120 WCYEAFESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.....+.||+.++..+.+|+. .+..+-+-|.|-+|.|||.+...++.+...
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~ 201 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK 201 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh
Confidence 566788999999999998876 456678999999999999999999988765
No 232
>PRK06762 hypothetical protein; Provisional
Probab=95.28 E-value=0.015 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|.|.|++|.||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 233
>PRK03839 putative kinase; Provisional
Probab=95.25 E-value=0.015 Score=55.70 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.4
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.|.|+|++|.||||+|+.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987654
No 234
>PTZ00301 uridine kinase; Provisional
Probab=95.24 E-value=0.015 Score=56.66 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|||.|.+|.||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 3689999999999999999887643
No 235
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.23 E-value=0.079 Score=54.62 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=39.1
Q ss_pred ccccccHHHHHHHHHHhCCCC---ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 123 EAFESRMSTLNDVLNALNNPN---VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+.+.+|+..+..+...+.+.. ++.|-|+|-.|.|||.+.+++++...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n 55 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN 55 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC
Confidence 457789999999999887433 45668999999999999999998763
No 236
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.13 Score=56.38 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.+|+|+|.+|+||||++.++...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999887654
No 237
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.21 E-value=0.036 Score=56.31 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..|.|.|.+|.||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999886554
No 238
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.0044 Score=57.85 Aligned_cols=68 Identities=15% Similarity=0.040 Sum_probs=31.6
Q ss_pred CCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCC
Q 043214 688 EGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKL 760 (793)
Q Consensus 688 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L 760 (793)
..+++++.|++.+|..+....- ..-.+.+|+|+.|+|++|+.+++-. ......+++|+.|.|.+-|..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L---~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCL---ERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHH---HHhcccccchheeeccCCCeechhH--HHHHHHhhhhHHHHhcCchhh
Confidence 4455555556666554422100 0011245555555555555555431 223344555555555554443
No 239
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.17 E-value=0.062 Score=59.61 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-+.|+|..|.|||+||+++.+...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~ 173 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL 173 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998764
No 240
>PRK12377 putative replication protein; Provisional
Probab=95.15 E-value=0.034 Score=55.66 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+...+.++|..|+|||.||.++.+....
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999987654
No 241
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.14 E-value=0.019 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
||.++|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986543
No 242
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.14 E-value=0.025 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|.|-||+||||+|..+...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~ 24 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAA 24 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHH
Confidence 57888999999999999887663
No 243
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.05 Score=60.90 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=64.4
Q ss_pred CcccccccHHHHHHHHHHhC---------CCC---ceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc----ccccCCh
Q 043214 121 CYEAFESRMSTLNDVLNALN---------NPN---VNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM----RSCLQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~---------~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~----~~~~~~~ 182 (793)
.|..+.|-++.+.+|++.+. ..+ .+=|-.+|++|.|||-+||+|+-...- | .+.. .+.....
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence 46778899999999998765 222 347889999999999999999987665 3 1110 1112233
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
++..++++++-+.-+.+.|.+|.++..
T Consensus 750 E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 750 EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHHHHHhhccCCeEEEecccccc
Confidence 455677777777778999999998753
No 244
>PRK04040 adenylate kinase; Provisional
Probab=95.09 E-value=0.02 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=23.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+|+|+|++|.||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999988763
No 245
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.07 E-value=0.026 Score=58.46 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|+|-||+||||+|..+...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~ 23 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHM 23 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999887663
No 246
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.03 E-value=0.21 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..++|+|+|.+|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999887654
No 247
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.01 E-value=0.083 Score=62.75 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=36.9
Q ss_pred cccccHHHHHHHHHHhC------CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 124 AFESRMSTLNDVLNALN------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.++|.+..++.+.+++. .....++.++|.+|+|||++|+.+.+....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 36688888888877653 123458999999999999999999987654
No 248
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.00 E-value=0.46 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|++++|..|+||||++.++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999887643
No 249
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.98 E-value=0.11 Score=57.10 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-+.|+|..|.|||.|++++.+...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~ 166 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIE 166 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHH
Confidence 4588999999999999999998543
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.17 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.++.++|..|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998764
No 251
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.082 Score=60.63 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=61.2
Q ss_pred CcccccccHHHHHHHHHHhC---CCCceEEEEEecCCChHHHHHHHHHhhhhh------ce----eccc--------ccc
Q 043214 121 CYEAFESRMSTLNDVLNALN---NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------IS----FLMR--------SCL 179 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------fq----~~~~--------~~~ 179 (793)
...+++||++++.++++.|. .+++ ..+|-+|+|||++|--++.+.-. .+ ++.+ ...
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP---vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyR 244 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP---VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYR 244 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC---eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccccc
Confidence 46788999999999999987 2333 37899999999998777765433 11 1111 112
Q ss_pred CChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 180 QSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 180 ~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
...+++.+.+.+.+...+++.|++|.+.+.
T Consensus 245 GeFEeRlk~vl~ev~~~~~vILFIDEiHti 274 (786)
T COG0542 245 GEFEERLKAVLKEVEKSKNVILFIDEIHTI 274 (786)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 345677788888887656899999998764
No 252
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.95 E-value=0.021 Score=55.04 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++.+|.|+|.+|+||||+|+.+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998654
No 253
>PRK00625 shikimate kinase; Provisional
Probab=94.94 E-value=0.02 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.|.++||+|+||||+|+.+.+....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999886543
No 254
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.93 E-value=0.032 Score=58.03 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+++-+.|-||+||||+|.+..-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~ 24 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA 24 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH
Confidence 68899999999999999886543
No 255
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.90 E-value=0.031 Score=57.38 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
||+|.|-||+||||+|..+...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~ 23 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVA 23 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 6889999999999998887664
No 256
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.90 E-value=1.8 Score=44.12 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=24.2
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+.+.+.|.|.|++.+|||||.+.+-..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~A 191 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTA 191 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcC
Confidence 568899999999999999999999763
No 257
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.021 Score=54.13 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..+|+|-||=|+||||||+.+.++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999998763
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.89 E-value=0.046 Score=64.69 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=56.1
Q ss_pred CcccccccHHHHHHHHHHhC----C---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc-----ccccC
Q 043214 121 CYEAFESRMSTLNDVLNALN----N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM-----RSCLQ 180 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~-----~~~~~ 180 (793)
.+..+.|.+..++++.+.+. . ...+-|.++|.+|.||||||+++++.... | .+.. ....
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g- 254 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYG- 254 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccccc-
Confidence 34557899888888777653 1 23457889999999999999999987654 2 2111 1111
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 181 SESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 181 ~~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
........+.+........+|+|||+..
T Consensus 255 ~~~~~l~~lf~~a~~~~p~il~iDEid~ 282 (733)
T TIGR01243 255 ESEERLREIFKEAEENAPSIIFIDEIDA 282 (733)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1123344455544444568999999864
No 259
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.025 Score=53.48 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.0
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhhce
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKKIS 172 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~fq 172 (793)
.|.|.|.+|.||||+|+.+.+....++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 478999999999999999999855433
No 260
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.79 E-value=0.17 Score=53.93 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=50.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhhceeccccccCCh------------HHHHHHHHHHHhcCCeEEEEEeCCCccc-
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSE------------SRRARRLCERLKKEKKILVILDNIWASL- 210 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~------------~~~~~~l~~~l~~~kr~LlVLDdv~~~~- 210 (793)
-..+-|||..|.|||-|++++.+...........-..+. ....+..++.. . -=++++||++-..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~--~dlllIDDiq~l~g 189 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-S--LDLLLIDDIQFLAG 189 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-c--cCeeeechHhHhcC
Confidence 568999999999999999999997655110000000000 12223334343 2 1389999997642
Q ss_pred --Ccch-hcCCCCC-CCCCcEEEEeecCCC
Q 043214 211 --DFEK-VGIPFGD-NHKGCKVLMTARNPD 236 (793)
Q Consensus 211 --~~~~-l~~~~~~-~~~gs~IivTTR~~~ 236 (793)
.|+. +...|.. ...|-.||+|++...
T Consensus 190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 190 KERTQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred ChhHHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 2222 2122211 223448999997665
No 261
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.77 E-value=0.031 Score=51.13 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..||-|.|.+|.||||||+++.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999987654
No 262
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.2 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..++|.++|..|+||||.+..++...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998887643
No 263
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.75 E-value=0.012 Score=34.00 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=11.1
Q ss_pred cccEEEecCCCCcccChhcc
Q 043214 517 TLEILSFQGSNIEEFPREIG 536 (793)
Q Consensus 517 ~L~~L~l~~~~l~~lp~~i~ 536 (793)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35556666665555555443
No 264
>PRK10867 signal recognition particle protein; Provisional
Probab=94.75 E-value=0.43 Score=51.91 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+.+|.++|.+|+||||.|..++...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346899999999999999988776543
No 265
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.75 E-value=0.11 Score=47.10 Aligned_cols=103 Identities=13% Similarity=0.228 Sum_probs=64.2
Q ss_pred hhHHHH-HHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 043214 2 VEIVIS-VAAKISEYLVAPMILPFTYLCNYKSNFENLKNEIGKLRVARESVLHRVDDAKRNGEDIEQKVEKWLSDVDKIM 80 (793)
Q Consensus 2 a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~wl~~l~~~~ 80 (793)
||++.| ++|.+++.+...+.+.......+.. -+++|..+++.|..++++.+......+..-+.-++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~-------~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKS-------ILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 566655 6777788777777766555555555 45555555555556665555433333333366678888899
Q ss_pred HHHHHHHHHHHHHhccccccCcCCCcchhhhhhHhhhhh
Q 043214 81 DAAGQIIEDEERAKNSRCFRGLCPNLTTCYQFSKKAAKE 119 (793)
Q Consensus 81 ~~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 119 (793)
.+++++++.+..-.++ ++...++.+++|+++
T Consensus 76 ~~g~~LV~k~sk~~r~--------n~~kk~~y~~Ki~~l 106 (147)
T PF05659_consen 76 EKGKELVEKCSKVRRW--------NLYKKPRYARKIEEL 106 (147)
T ss_pred HHHHHHHHHhccccHH--------HHHhhHhHHHHHHHH
Confidence 9999999887754432 223345566777665
No 266
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.73 E-value=0.035 Score=56.84 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
...+.+|||.|..|+||||+|+.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999987654
No 267
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.73 E-value=0.08 Score=53.74 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=59.9
Q ss_pred HHHHHHhC-CCCceEEEEEecCCChHHHHHHHHHhhhhh------c----------------------e--eccccccCC
Q 043214 133 NDVLNALN-NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------I----------------------S--FLMRSCLQS 181 (793)
Q Consensus 133 ~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------f----------------------q--~~~~~~~~~ 181 (793)
+.++..+. ..+..-++|+|..|.|||||.+.+...... | | +....+..+
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~ 178 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLD 178 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccc
Confidence 33444443 445678999999999999999999765543 1 0 000001111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecC
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARN 234 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 234 (793)
....+..+...+.....=++++|.+...+.+..+...+ ..|..||+||.+
T Consensus 179 ~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~ 228 (270)
T TIGR02858 179 GCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHG 228 (270)
T ss_pred cchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEech
Confidence 11123344445543356789999998776666664443 247789999973
No 268
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.65 E-value=0.2 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-+++.++|.+|+||||++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999998887654
No 269
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.64 E-value=0.05 Score=53.73 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=24.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-----ceeccc
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-----ISFLMR 176 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-----fq~~~~ 176 (793)
+.|+|+|-|||||+|.+..+...... +|++-+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCD 37 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCD 37 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEeccc
Confidence 47999999999999999887654433 565544
No 270
>PRK13768 GTPase; Provisional
Probab=94.59 E-value=0.041 Score=55.69 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.++.|+|.||+||||++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 58899999999999998886653
No 271
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.57 E-value=0.14 Score=47.75 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=65.5
Q ss_pred ccHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh------------------------ce-eccccc-c
Q 043214 127 SRMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK------------------------IS-FLMRSC-L 179 (793)
Q Consensus 127 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~------------------------fq-~~~~~~-~ 179 (793)
|.++..+.+.+.+..+.+. .+-++|..|+||+|+|..+.+..-. |. +..... .
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4455667777777766665 6899999999999999988664311 00 111111 0
Q ss_pred CChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 180 QSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 180 ~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.-..+.+..+.+.+. .+++=.+|+||+... ...+.+...+..-..++++|++|++..
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 112344445555543 123457899999886 445665555544457889999998654
No 272
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.56 E-value=0.032 Score=53.10 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|.+.|+.|.||||+|+.+++...
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999998764
No 273
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.55 E-value=0.044 Score=58.93 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 124 AFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++.+..++.+...|... ..|.++|++|+|||++|+++++...
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567788889999888743 5778899999999999999987653
No 274
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.54 E-value=0.025 Score=53.92 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+|+|.|.+|.||||+|+.+.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 275
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.53 E-value=0.024 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|||.|..|.||||+|+.+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987754
No 276
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.51 E-value=0.032 Score=52.97 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
...|.++|++|.||||+|+.+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999887543
No 277
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.055 Score=50.79 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+.|-+.|.+|+||||+|+++.+..+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 45778999999999999999887665
No 278
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.48 E-value=0.038 Score=51.64 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+++|+|..|.|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999887554
No 279
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.47 E-value=0.056 Score=52.01 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEEEecCCChHHHHHHHHHh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.|+|.|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999887444
No 280
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.44 E-value=0.04 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
++|+|+|..|+|||||++.+.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4899999999999999999887554
No 281
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.44 E-value=0.1 Score=57.78 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=52.1
Q ss_pred ccccccHHHHHHHHHHh---C-------CCCceEEEEEecCCChHHHHHHHHHhhhhh--ceecc-----ccccCChHHH
Q 043214 123 EAFESRMSTLNDVLNAL---N-------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLM-----RSCLQSESRR 185 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~-----~~~~~~~~~~ 185 (793)
..+.|.+..++.+.+.. . -...+-|-++|.+|.|||.+|+++.+.... |.+.. ..-.+ ....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe-se~~ 306 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE-SESR 306 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh-HHHH
Confidence 44667665554444321 1 123467889999999999999999998765 32211 11111 2233
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCc
Q 043214 186 ARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 186 ~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
..++.+......+++|++|+++.
T Consensus 307 l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 307 MRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred HHHHHHHHHhcCCcEEEehhhhh
Confidence 44455444445789999999974
No 282
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.41 E-value=0.026 Score=54.94 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+|+|.|..|.||||||+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999887663
No 283
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.41 E-value=0.028 Score=48.32 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=20.3
Q ss_pred EEEEecCCChHHHHHHHHHhhhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
|-|+|.+|+|||++|+.+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999998876543
No 284
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.39 E-value=0.047 Score=56.48 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.5
Q ss_pred EEEEecCCChHHHHHHHHHhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~ 167 (793)
|+|+|-||+||||+|..+...
T Consensus 3 ia~~gKGGVGKTTta~nLA~~ 23 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIA 23 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999998887654
No 285
>PRK06217 hypothetical protein; Validated
Probab=94.37 E-value=0.03 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..|.|.|++|.||||+|+++.+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987643
No 286
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.37 E-value=0.12 Score=52.17 Aligned_cols=27 Identities=41% Similarity=0.516 Sum_probs=23.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-+.++|+|-+|.||||||+.+++..+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~ 94 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA 94 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH
Confidence 346899999999999999999998765
No 287
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.31 E-value=0.029 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
||.|+|++|+||||+|+.+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987654
No 288
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.30 E-value=0.095 Score=55.28 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..++|+++|.+|+||||++.++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999988653
No 289
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.30 E-value=0.054 Score=56.18 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.+++-+.|.||+||||+|.+..-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~ 24 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV 24 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH
Confidence 47899999999999999988443
No 290
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.26 E-value=0.035 Score=53.01 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.++.|+|+.|+||||+|+.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987754
No 291
>PRK10536 hypothetical protein; Provisional
Probab=94.25 E-value=0.068 Score=53.04 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=37.8
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 120 WCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.++.++.+|......++.++.+. .++.+.|.+|.|||+||.++..+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 44566778888888888888754 49999999999999999997763
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=94.24 E-value=0.36 Score=50.63 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|.++|+.|+||||++..++...
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999888877643
No 293
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.033 Score=50.92 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHH
Q 043214 146 MIGVYGMAGVGKTKLVKEAP 165 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~ 165 (793)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 294
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.16 Score=50.48 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=63.0
Q ss_pred CcccccccHHHHHHHHHHhC----------CC--CceEEEEEecCCChHHHHHHHHHhhhhh--ceeccc-----cccCC
Q 043214 121 CYEAFESRMSTLNDVLNALN----------NP--NVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMR-----SCLQS 181 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~-----~~~~~ 181 (793)
.|..+.|-+..++.|.+... .. .-+-|-++|++|.||+.||++|+-.... |.++.. +- ..
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm-GE 209 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM-GE 209 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh-cc
Confidence 46778888888888887653 22 2578899999999999999999987666 442211 11 12
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.+.....+++.-+..|.-.|++|.|+.
T Consensus 210 SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 210 SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 345667777777777899999999864
No 295
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.22 E-value=0.047 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+.||.++|..|+||||.+.+++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4799999999999999988876643
No 296
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.21 E-value=0.068 Score=56.13 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=39.9
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++..++|.+..+..++-.+.+....-+.|.|..|.|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 456788999998888776666667778899999999999999997644
No 297
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.21 E-value=0.048 Score=51.84 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|.|+|++|.||||+|+++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998765
No 298
>PRK13947 shikimate kinase; Provisional
Probab=94.13 E-value=0.038 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.9
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
-|.|+||+|.||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999887544
No 299
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.11 E-value=0.077 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
...++|.++|.+|+||||.+..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999998887764
No 300
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.10 E-value=0.32 Score=47.02 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=64.5
Q ss_pred ccccHHHHHHHHH----HhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--ceeccccccCChHHHHHHHHHHHh-cCC
Q 043214 125 FESRMSTLNDVLN----ALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRSCLQSESRRARRLCERLK-KEK 197 (793)
Q Consensus 125 ~~gr~~~~~~l~~----~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~~~~~~~~~~~~l~~~l~-~~k 197 (793)
++|-+...+.+++ ++.+-..--|-+||-.|.||++|+|++.+.+.. .. -.+.+.. +......+.+.|+ ...
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr-LVEV~k~-dl~~Lp~l~~~Lr~~~~ 139 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR-LVEVDKE-DLATLPDLVELLRARPE 139 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe-EEEEcHH-HHhhHHHHHHHHhcCCc
Confidence 4455555555543 343434456789999999999999999998765 11 0011111 1122345556664 247
Q ss_pred eEEEEEeCCCccc---CcchhcCCCCC---CCCCcEEEEeecCCC
Q 043214 198 KILVILDNIWASL---DFEKVGIPFGD---NHKGCKVLMTARNPD 236 (793)
Q Consensus 198 r~LlVLDdv~~~~---~~~~l~~~~~~---~~~gs~IivTTR~~~ 236 (793)
||.|..||..-++ ....++..+.. ..+.-.++..|.++.
T Consensus 140 kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 140 KFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred eEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 8999999997552 35555555522 224444555666554
No 301
>PRK13949 shikimate kinase; Provisional
Probab=94.10 E-value=0.038 Score=52.05 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+.|.|+|+.|.||||+|+.+.+....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999886543
No 302
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.10 E-value=0.038 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|+|.|..|.||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887643
No 303
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.08 E-value=0.2 Score=58.05 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=40.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-cc---cCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-SC---LQSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~~---~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
+-|.++|.+|.||||+|+.+.+.... | .++.. +. ..........+.+.........|++|+++..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l 256 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhh
Confidence 34899999999999999999887655 2 22110 00 0111122333444444446789999998654
No 304
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.058 Score=51.59 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=25.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-----ceeccccc
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-----ISFLMRSC 178 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-----fq~~~~~~ 178 (793)
+.|+|+|-|||||+|.++.+...... +|++-+..
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPK 40 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPK 40 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCC
Confidence 57999999999999998887655443 55554433
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.08 E-value=0.05 Score=53.29 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.9
Q ss_pred HhCCCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 138 ALNNPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 138 ~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+...++++|+++|..|.|||||..++.+.
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999887764
No 306
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.06 E-value=0.037 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+|.|.|..|.||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 307
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.00 E-value=0.035 Score=48.47 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=17.5
Q ss_pred EEEEecCCChHHHHHHHHHhhhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
|-|+|.+|+||||+|+++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 568999999999999999886554
No 308
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.99 E-value=0.13 Score=50.01 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=56.7
Q ss_pred CcccccccHHHHHH---HHHHhCCC------CceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc-cccc---CChHHH
Q 043214 121 CYEAFESRMSTLND---VLNALNNP------NVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM-RSCL---QSESRR 185 (793)
Q Consensus 121 ~~~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~-~~~~---~~~~~~ 185 (793)
.+..++|.++.+.+ |++.|.+. .++-|-.+|.+|.|||-+|+++.|..+. | .+.. ..-. .+-..+
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~ 198 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARR 198 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHH
Confidence 45667888876543 55666632 5788999999999999999999998877 3 1110 0111 122233
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCc
Q 043214 186 ARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 186 ~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
++++.++-..--.+.+.+|..+-
T Consensus 199 Ihely~rA~~~aPcivFiDE~DA 221 (368)
T COG1223 199 IHELYERARKAAPCIVFIDELDA 221 (368)
T ss_pred HHHHHHHHHhcCCeEEEehhhhh
Confidence 44444444444579999998753
No 309
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.081 Score=58.76 Aligned_cols=63 Identities=25% Similarity=0.158 Sum_probs=39.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh----ce--e-ccccccCChHHHHHHHH----HHHhcCCeEEEEEeCCCc
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK----IS--F-LMRSCLQSESRRARRLC----ERLKKEKKILVILDNIWA 208 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~----fq--~-~~~~~~~~~~~~~~~l~----~~l~~~kr~LlVLDdv~~ 208 (793)
+-|-|.|..|+|||+||+++++.+.. |+ + ....+....+..++.+. +.+.- ..-+|||||++-
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~-~PSiIvLDdld~ 505 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY-APSIIVLDDLDC 505 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhh-CCcEEEEcchhh
Confidence 56889999999999999999997765 32 1 11122222222222222 23333 467999999853
No 310
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.95 E-value=0.15 Score=60.41 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=54.8
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccCC
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQS 181 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~~ 181 (793)
+..+.|.+..++.+.+.+. -...+-|-++|.+|.|||++|+++++.... | .+. ...-.+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGe- 530 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE- 530 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCc-
Confidence 4456677766666655442 123456889999999999999999997655 3 211 111111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.......+.+.........|++|+++.
T Consensus 531 se~~i~~~f~~A~~~~p~iifiDEid~ 557 (733)
T TIGR01243 531 SEKAIREIFRKARQAAPAIIFFDEIDA 557 (733)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEChhh
Confidence 233445555555555679999999864
No 311
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.92 E-value=0.04 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999988764
No 312
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.089 Score=53.09 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=24.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+..-+.++|.+|+|||.||.++.+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~ 131 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK 131 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5667899999999999999999987654
No 313
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.90 E-value=0.094 Score=52.34 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+.++|.+|+|||+||.++.+...
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998764
No 314
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.87 E-value=0.074 Score=59.31 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=38.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh--ceeccccccCChHHHHHHHHHHHh-------cCCeEEEEEeCCCcc
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRSCLQSESRRARRLCERLK-------KEKKILVILDNIWAS 209 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~~~~~~~~~~~~l~~~l~-------~~kr~LlVLDdv~~~ 209 (793)
-++.-+.|.+|+||||||.-|+++.-- ..+.. .+..+....-+.|...+. +++...||+|.++..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA-SDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA-SDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecc-cccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 468999999999999999999885321 00000 111111222222322222 256778999999865
No 315
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.84 E-value=0.42 Score=56.41 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=38.2
Q ss_pred cccccHHHHHHHHHHhC------CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 124 AFESRMSTLNDVLNALN------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..+|.+..+++|++++. .....++.++|.+|+||||+|+.+......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~ 375 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR 375 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46788888999988775 124568999999999999999999976544
No 316
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=0.35 Score=50.83 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=52.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-----------------ce---------eccccc-cCChHHHHHHHHHHHh---
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-----------------IS---------FLMRSC-LQSESRRARRLCERLK--- 194 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq---------~~~~~~-~~~~~~~~~~l~~~l~--- 194 (793)
..+-++|+.|+||||+|+.+.+..-- |. +..... ..-..+.++.+.+.+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 35789999999999999998765321 10 111100 1112234444555443
Q ss_pred --cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 195 --KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 195 --~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+++|+. |+|++... ...+.+...+..-..++.+|+||.+..
T Consensus 103 ~~~~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 103 QLGGRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred ccCCCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 334555 67999876 334444444433235677888888776
No 317
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.78 E-value=0.023 Score=32.82 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=12.5
Q ss_pred cceEEEecCCcCCCCChhhhc
Q 043214 472 ELRVLDFVAMHLPSLPSSLCL 492 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp~~i~~ 492 (793)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 318
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.77 E-value=0.064 Score=52.13 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|+|++|.||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999987754
No 319
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.75 E-value=0.14 Score=47.05 Aligned_cols=91 Identities=26% Similarity=0.249 Sum_probs=52.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-------ceeccc--------------------------cccCChHH-------
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-------ISFLMR--------------------------SCLQSESR------- 184 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-------fq~~~~--------------------------~~~~~~~~------- 184 (793)
..|-|++-.|-||||+|-...-+... +|+... +...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 46778888999999999876554332 231100 01111111
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCccc-----CcchhcCCCCCCCCCcEEEEeecCC
Q 043214 185 RARRLCERLKKEKKILVILDNIWASL-----DFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 185 ~~~~l~~~l~~~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
..+..++.+..++-=|||||++-... ..+.+...+....++.-||+|.|+.
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12334444555444599999997662 2344444443444567899999954
No 320
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.73 E-value=0.047 Score=52.21 Aligned_cols=24 Identities=38% Similarity=0.456 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++|+|+|..|.||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998854
No 321
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.73 E-value=0.052 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEecCCChHHHHHHHHHhhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
|.++|++|.||||+|+.+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987653
No 322
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.72 E-value=0.054 Score=50.76 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEecCCChHHHHHHHHHhhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
|.|.|.+|+|||||++.+.+..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998774
No 323
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.13 Score=58.54 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=57.7
Q ss_pred CcccccccHHHH---HHHHHHhCC---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc-cc---ccCCh
Q 043214 121 CYEAFESRMSTL---NDVLNALNN---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM-RS---CLQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~---~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~-~~---~~~~~ 182 (793)
.+..+.|-++.+ +++++.|.+ .-++=+-++|++|.|||-|||+++-...+ | .++- ++ -....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~ 388 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG 388 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc
Confidence 355667776655 555556652 23567889999999999999999988776 3 2111 10 01111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
..+.+.+...-+......|.+|+++..
T Consensus 389 asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 389 ASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred hHHHHHHHHHhhccCCeEEEecccccc
Confidence 445566666666667789999998643
No 324
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.70 E-value=0.098 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+++|.+|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999987643
No 325
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.68 E-value=0.052 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
|++|+|+.|+|||||+.++....+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999998876543
No 326
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=0.17 Score=48.53 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=59.1
Q ss_pred HHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh----c----------------------e--eccccccCChHHHH
Q 043214 135 VLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----I----------------------S--FLMRSCLQSESRRA 186 (793)
Q Consensus 135 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----f----------------------q--~~~~~~~~~~~~~~ 186 (793)
+++.+.++...-.-|.|.+|+|||||.+.+.+-... | | .+...+.-+.....
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHH
Confidence 555555566666789999999999999998875543 3 0 11111111111222
Q ss_pred HHHHHHHhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeec
Q 043214 187 RRLCERLKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 187 ~~l~~~l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR 233 (793)
+-+...+.+--.=.+|.|.+-+.++-.++..++ ..|-++|.|..
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 333334433345678999999887776665553 56777777765
No 327
>PRK14530 adenylate kinase; Provisional
Probab=93.66 E-value=0.054 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.|.|+|++|.||||+|+.+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
No 328
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.65 E-value=0.055 Score=51.43 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++|.+.|++|.||||+|+.+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999987764
No 329
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.63 E-value=0.082 Score=55.54 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=42.2
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 120 WCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-++..++|-++.+..|+..+.+..+.-|-|.|..|.||||+|+.+|+-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35677889999888888877777777777999999999999999987543
No 330
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.13 Score=56.25 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=46.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhhh-c-ee-----ccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SF-----LMRSCLQSESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~-----~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
..++=|-+||++|-|||-||++|+|.... | .+ .... ....+....+++++-+..-.+.|++|.++.
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY-VGESErAVR~vFqRAR~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY-VGESERAVRQVFQRARASAPCVIFFDEIDA 615 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH-hhhHHHHHHHHHHHhhcCCCeEEEecchhh
Confidence 34567889999999999999999998776 4 11 1111 112233455666666666789999999864
No 331
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.60 E-value=0.061 Score=50.83 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...|.|+|+.|.||||+|+.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999988643
No 332
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.59 E-value=0.064 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEecCCChHHHHHHHHHhhhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
|-++|.+|+|||+||+.+++....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 579999999999999999987654
No 333
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=93.58 E-value=0.072 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++|+|.|-||+||||+|..+....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L 26 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY 26 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 689999999999999999877643
No 334
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.53 E-value=0.12 Score=45.95 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+|.+.|.-|.||||+++.+.+..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998864
No 335
>PRK13975 thymidylate kinase; Provisional
Probab=93.52 E-value=0.063 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999987653
No 336
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.51 E-value=0.064 Score=52.51 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=23.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
....|.++||+|.||||..+.++.....
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 4568899999999999999999876543
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.44 E-value=0.11 Score=52.75 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 134 DVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 134 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+..+++...++.+|.|+|.+|.|||||+..+.+...
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344455567899999999999999999988877643
No 338
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.44 E-value=0.13 Score=49.84 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=49.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh------c--e----e--cc--cc----c-cCChHHHHHHHHHHHhcCCeEEEEE
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK------I--S----F--LM--RS----C-LQSESRRARRLCERLKKEKKILVIL 203 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~------f--q----~--~~--~~----~-~~~~~~~~~~l~~~l~~~kr~LlVL 203 (793)
.+|.|+|..|.||||+++.+.+.... + . . .. .. . ........+.+...+.. ..=.+++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~-~pd~ii~ 80 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ-DPDVILV 80 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC-CcCEEEE
Confidence 47899999999999999987654431 1 0 0 00 00 0 00112234455555654 3458999
Q ss_pred eCCCcccCcchhcCCCCCCCCCcEEEEeec
Q 043214 204 DNIWASLDFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 204 Ddv~~~~~~~~l~~~~~~~~~gs~IivTTR 233 (793)
|.+.+.+.+..+... ...|..|+.|+.
T Consensus 81 gEird~e~~~~~l~~---a~~G~~v~~t~H 107 (198)
T cd01131 81 GEMRDLETIRLALTA---AETGHLVMSTLH 107 (198)
T ss_pred cCCCCHHHHHHHHHH---HHcCCEEEEEec
Confidence 999876554443222 234556777775
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.41 E-value=0.062 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.7
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+|.|-|.+|.||||+|+.+.++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 789999999999999999988754
No 340
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.39 E-value=0.095 Score=56.99 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=38.0
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...++||++.++.+...+..+ .-|-|+|.+|+|||++|+.+.....
T Consensus 19 ~~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 346889999999988877644 4578999999999999999988543
No 341
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.38 E-value=0.06 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+|+|+|..|+||||||+.+.....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999988654
No 342
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.37 E-value=0.073 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|.|.|.+|+||||+|+.+.++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 343
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.36 E-value=0.13 Score=50.88 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 131 TLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 131 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...++++.+. ..+..+|||.|.+|.||+||.-++-....
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 4556666655 45678999999999999999988766543
No 344
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.35 E-value=0.13 Score=52.51 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 133 NDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 133 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+++.+...+ +-+-++|..|.|||++++...+...
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC
Confidence 44555554443 4558999999999999999876543
No 345
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.34 E-value=0.068 Score=48.47 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..|+.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999988876655
No 346
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=1.3 Score=43.00 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=53.5
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-e-ecccccc---CCh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-S-FLMRSCL---QSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q-~~~~~~~---~~~ 182 (793)
+..+.|.+-.++++.+... -+.++-|-.+|++|.|||-||++|+|+-.. | . ++..+-. ..-
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 4456677777777766543 245678889999999999999999997665 3 1 1111100 001
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+++.-+.+-.-.|.+|.|+.
T Consensus 234 prmvrdvfrlakenapsiifideida 259 (408)
T KOG0727|consen 234 PRMVRDVFRLAKENAPSIIFIDEIDA 259 (408)
T ss_pred cHHHHHHHHHHhccCCcEEEeehhhh
Confidence 12333444444444567888888864
No 347
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.33 E-value=0.061 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.++.|+|+.|.|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997753
No 348
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.31 E-value=0.058 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|+|+|+.|+|||||++.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 349
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.26 E-value=0.11 Score=51.69 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=26.7
Q ss_pred HHHHHHhC-CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 133 NDVLNALN-NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 133 ~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+.++.. ......+.|+|..|+|||+||+++++..
T Consensus 30 ~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 30 ARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444433 2344678999999999999999999875
No 350
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.16 E-value=0.19 Score=43.82 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHhC-------CCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 125 FESRMSTLNDVLNALN-------NPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|-.-..+.+++.+. ...+-|++..|..|+|||.+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4565555555554443 235669999999999999998888775
No 351
>PRK05439 pantothenate kinase; Provisional
Probab=93.13 E-value=0.13 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
...-+|||.|.+|+||||+|+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999887653
No 352
>PRK13946 shikimate kinase; Provisional
Probab=93.13 E-value=0.07 Score=51.16 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=23.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+.|.++|+.|.||||+|+.+.+....
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 57999999999999999999987543
No 353
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.13 Score=51.50 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=41.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh-ce--eccccccCChHHHHHHHHHH---HhcCCeEEEEEeCCCc
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK-IS--FLMRSCLQSESRRARRLCER---LKKEKKILVILDNIWA 208 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq--~~~~~~~~~~~~~~~~l~~~---l~~~kr~LlVLDdv~~ 208 (793)
.+..++|||.+|-|||-+|++|+..... |= ++......-..+.++.|++. .+..-.+.|.+||++-
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhh
Confidence 3568999999999999999999987765 31 11111111112233344443 3344569999999853
No 354
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.13 E-value=0.07 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
||.|+|.+|.||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987754
No 355
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.10 E-value=0.3 Score=51.60 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=65.0
Q ss_pred ccc-cHHHHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh-----------------c--------eecccc
Q 043214 125 FES-RMSTLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK-----------------I--------SFLMRS 177 (793)
Q Consensus 125 ~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~-----------------f--------q~~~~~ 177 (793)
++| .+..++.+.+.+..+.+. ..-++|..|+||||+|+.+.+..-- + ......
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 445 555667777777666554 5699999999999999998665311 0 000000
Q ss_pred ccCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 178 CLQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 178 ~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
......+.+..+.+.+. .+++=.+|+|++.... ..+.+...+..-.+++.+|++|.+..
T Consensus 87 ~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 87 GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 11111233444444443 1233468899987663 34455444443345777888887554
No 356
>PHA02774 E1; Provisional
Probab=93.08 E-value=0.14 Score=56.62 Aligned_cols=140 Identities=15% Similarity=0.187 Sum_probs=71.7
Q ss_pred HHHHHHHhCCC-CceEEEEEecCCChHHHHHHHHHhhhhh----ceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCC
Q 043214 132 LNDVLNALNNP-NVNMIGVYGMAGVGKTKLVKEAPRLAKK----ISFLMRSCLQSESRRARRLCERLKKEKKILVILDNI 206 (793)
Q Consensus 132 ~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv 206 (793)
+..+..++... .-.-+.|+|++|.|||.+|-.+.+-... | +... + +-..+-+.+ .+ ++||||+
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~f-vN~~----s-----~FwLqpl~d-~k-i~vlDD~ 488 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF-VNSK----S-----HFWLQPLAD-AK-IALLDDA 488 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEE-EECc----c-----ccccchhcc-CC-EEEEecC
Confidence 45555555422 2348999999999999999999886542 1 1100 0 111223333 43 6999999
Q ss_pred CcccCcchh----cCCCCCCC--------------CCcEEEEeecCCCCCCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 043214 207 WASLDFEKV----GIPFGDNH--------------KGCKVLMTARNPDISGDYAENEDLQSIAKDVAKACGCLPIAIVTI 268 (793)
Q Consensus 207 ~~~~~~~~l----~~~~~~~~--------------~gs~IivTTR~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 268 (793)
-.. .|+.+ +..+ ++. ..-.+||||-... ...+.++.+-.+|..-.-..|.-+..=
T Consensus 489 t~~-~w~y~d~~Lrn~L-dG~~v~lD~Khk~~~q~k~pPlIITSN~d~-----~~~~~~~yL~sRi~~f~F~n~~P~d~~ 561 (613)
T PHA02774 489 THP-CWDYIDTYLRNAL-DGNPVSIDCKHKAPVQIKCPPLLITSNIDV-----KAEDRYKYLHSRITVFEFPNPFPLDEN 561 (613)
T ss_pred cch-HHHHHHHHHHHHc-CCCcceeeecccCcccccCCCEEEecCCCc-----ccchhhHHhhhhEEEEECCCCCCcCCC
Confidence 333 34322 2222 111 1246889986222 112233333333332222222222211
Q ss_pred HHHHccCChHHHHHHHHHHcCC
Q 043214 269 ARALRNKSVFEWKNALQELRRP 290 (793)
Q Consensus 269 g~~l~~~~~~~w~~~l~~l~~~ 290 (793)
|.-+...+...|+.+..+++..
T Consensus 562 G~P~f~ltd~~WKsFF~rlw~~ 583 (613)
T PHA02774 562 GNPVFELTDANWKSFFERLWSQ 583 (613)
T ss_pred CCEeeeeCchhHHHHHHHHHHH
Confidence 2222344678999998886543
No 357
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.07 E-value=0.22 Score=52.46 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=27.3
Q ss_pred HHHHHHhCC-CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 133 NDVLNALNN-PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 133 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.++++.+.. +.-+.+.|+|.+|.|||||++.+.+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 446666652 344678999999999999999987743
No 358
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.06 E-value=0.35 Score=51.18 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=67.9
Q ss_pred ccccHHHHHHHHHHhC-CCCceE-EEEEecCCChHHHHHHHHHhhhhh-----------------c---------eeccc
Q 043214 125 FESRMSTLNDVLNALN-NPNVNM-IGVYGMAGVGKTKLVKEAPRLAKK-----------------I---------SFLMR 176 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~-----------------f---------q~~~~ 176 (793)
+++-+....++..+.. .++..- +-++|+.|+||||+|.++.+..-. + .+...
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4556666777777776 344555 999999999999999999886542 0 01111
Q ss_pred cccC--ChHHHHHHHHHHHhc----CCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 177 SCLQ--SESRRARRLCERLKK----EKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 177 ~~~~--~~~~~~~~l~~~l~~----~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.... ...+.++.+.+.... +++=++++|+++... .-+.+...+......+++|++|....
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 1111 123334444444321 456799999998763 33444333333456778888887554
No 359
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.06 E-value=0.17 Score=57.33 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=35.6
Q ss_pred CcccccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 121 CYEAFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+..+.|.+..+.|.+.-. .....+|.|+|+.|.||||+|+.++....
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 34555677776665555443 34456999999999999999999987653
No 360
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.06 E-value=0.076 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.4
Q ss_pred EEEEecCCChHHHHHHHHHhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~ 167 (793)
|+|.|..|.|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 899999999999999998875
No 361
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.04 E-value=0.084 Score=44.83 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.7
Q ss_pred ceEEEEEecCCChHHHHHHHHH
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAP 165 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~ 165 (793)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999875
No 362
>PRK14527 adenylate kinase; Provisional
Probab=93.04 E-value=0.09 Score=50.78 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
....+|.|+|.+|.||||+|+.+.+...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987553
No 363
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.03 E-value=0.08 Score=46.45 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHHhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~ 167 (793)
|.|+|..|+|||||.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999998764
No 364
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.02 E-value=0.65 Score=47.23 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhC---CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 129 MSTLNDVLNALN---NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 129 ~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+.++++.+.+. .....-+.|||-+|+|||++++++.+...
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC
Confidence 344555655555 34556789999999999999999887554
No 365
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.99 E-value=0.67 Score=48.93 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..++++++|..|+||||++..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999887653
No 366
>PRK13948 shikimate kinase; Provisional
Probab=92.97 E-value=0.094 Score=49.86 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..+.|.++||.|.||||+++.+.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999886543
No 367
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.97 E-value=0.064 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEecCCChHHHHHHHHHhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~ 168 (793)
|.|+|..|.||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999987753
No 368
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.97 E-value=0.091 Score=48.38 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+|++|+|+.|.|||||+..+-...+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~ 28 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA 28 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHh
Confidence 469999999999999998887765544
No 369
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.94 E-value=0.084 Score=44.20 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999877643
No 370
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.011 Score=55.21 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=39.7
Q ss_pred CccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccccch
Q 043214 716 RDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACKNM 786 (793)
Q Consensus 716 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 786 (793)
...+++++.|.+.+|..+.+|+-.... +-.|+|+.|+|++||++++-. ...+..+++|+.|.+.+-+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhh
Confidence 345566666666666666666422211 245677777777777766542 234455666666666655544
No 371
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=92.89 E-value=0.21 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.173 Sum_probs=20.6
Q ss_pred CCceEEEEEe-cCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
...+||+|.. -||+||||+|..+...
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~ 130 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQD 130 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 3567898887 4789999999887663
No 372
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.27 Score=48.75 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=53.9
Q ss_pred cccccccHHHHHHHHHHhC----C---------CCceEEEEEecCCChHHHHHHHHHhhhhh-ce--ecccc---ccCCh
Q 043214 122 YEAFESRMSTLNDVLNALN----N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-IS--FLMRS---CLQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq--~~~~~---~~~~~ 182 (793)
|..+.|-+..+++|.+... . ..+.=|-++|.+|.|||-||++|+|.-.. |- ++... ...+-
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdG 263 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccc
Confidence 5667788888888888764 1 23566779999999999999999997665 41 11000 00111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCC
Q 043214 183 SRRARRLCERLKKEKKILVILDNIW 207 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~ 207 (793)
....+++++.-...-.-.+++|.++
T Consensus 264 pklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 264 PKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred hHHHHHHHHHHHhcCCceEEeehhh
Confidence 2334445544443345667777764
No 373
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.85 E-value=0.21 Score=50.96 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHHHhCC-CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 135 VLNALNN-PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 135 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+...+.. ..+-+|.|.|..|+||||+|+.+++..
T Consensus 82 ~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 82 LWRRIRKSKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333443 345689999999999999999999865
No 374
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.82 E-value=0.14 Score=47.08 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 130 STLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 130 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+.++++.+.+.+ +++.++|..|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 346677777764 79999999999999999998875
No 375
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.82 E-value=1.1 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.-.+|+++|..|+||||+++.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999887653
No 376
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.80 E-value=0.35 Score=43.02 Aligned_cols=103 Identities=17% Similarity=0.323 Sum_probs=34.8
Q ss_pred hhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCC
Q 043214 464 NNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLT 539 (793)
Q Consensus 464 ~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~ 539 (793)
...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +.. -..+..+.+|+.+.+.. .+..++.. +..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 33344444444444442 222222 22334444444444432 222 12334444455555533 33333322 33355
Q ss_pred CCCEEecCCCcCccccChhhhcCCCCcceeecc
Q 043214 540 RLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMG 572 (793)
Q Consensus 540 ~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~ 572 (793)
+|+.+.+..+ ...++...+.+. +|+.+.+.
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 5555555431 233443334444 55555443
No 377
>PRK04182 cytidylate kinase; Provisional
Probab=92.80 E-value=0.086 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+|.|.|+.|.||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999987643
No 378
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.79 E-value=0.28 Score=53.14 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+-|-++|.+|+|||++|+.+.+....
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 56899999999999999999876654
No 379
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.78 E-value=0.39 Score=42.66 Aligned_cols=115 Identities=17% Similarity=0.319 Sum_probs=59.6
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCccc
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLE 519 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~ 519 (793)
.+++|+.+.+.. ... .++...|..++.|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+.. ...+..+.+|+
T Consensus 10 ~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 566788887764 233 677777888888999988775 55554 3566777888888865 3332 35566788999
Q ss_pred EEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCc
Q 043214 520 ILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRL 566 (793)
Q Consensus 520 ~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L 566 (793)
.+++..+ +..++. .+.+. +|+.+.+.. ....++...+.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 9998664 665544 35565 888888764 3345566656666555
No 380
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.76 E-value=0.073 Score=28.47 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=7.0
Q ss_pred cccEEEecCCCCcccC
Q 043214 517 TLEILSFQGSNIEEFP 532 (793)
Q Consensus 517 ~L~~L~l~~~~l~~lp 532 (793)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 381
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.68 E-value=0.097 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
..+|||+|+.|.||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998766
No 382
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.67 E-value=0.091 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.518 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.++||+|..|.||||||+.+.--
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 358999999999999999998653
No 383
>PLN02200 adenylate kinase family protein
Probab=92.65 E-value=0.11 Score=51.89 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+.+|.|.|++|.||||+|+.+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 384
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.29 Score=55.18 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=44.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
..+.+-++|++|.|||.||+++++.... | .+. .++-.+ .......+++.-.......|++|.++..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGe-sek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGE-SEKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccch-HHHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 4568999999999999999999996655 3 211 111111 2333444554444447899999999654
No 385
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=92.63 E-value=0.16 Score=43.35 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=17.6
Q ss_pred EEEEEe-cCCChHHHHHHHHHhh
Q 043214 146 MIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
+|+++| .||+||||+|..+...
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~ 23 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAA 23 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHH
Confidence 467777 7889999999887664
No 386
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.62 E-value=0.12 Score=47.94 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+++|+|..|.|||||+..+......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999998876543
No 387
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.21 Score=55.71 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=57.9
Q ss_pred cCcccccccHHHHHH---HHHHhCCC---------CceEEEEEecCCChHHHHHHHHHhhhhh--ceecc-ccc---cCC
Q 043214 120 WCYEAFESRMSTLND---VLNALNNP---------NVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLM-RSC---LQS 181 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~---l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~-~~~---~~~ 181 (793)
..+..+.|.++.+++ +++.|.+. -++=+..+|++|.|||.||+++.....+ |..+. ++- ..-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCC
Confidence 456677888876655 55555532 2457899999999999999999998877 33211 111 111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
-..+.+.+.+.-++.-.+.|++|.++..
T Consensus 227 GAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 227 GASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred CcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 1334555555544445799999998653
No 388
>PRK04296 thymidine kinase; Provisional
Probab=92.55 E-value=0.24 Score=47.70 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=57.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-------ce---------------eccccc---cCChHHHHHHHHHHHhcCCeE
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-------IS---------------FLMRSC---LQSESRRARRLCERLKKEKKI 199 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-------fq---------------~~~~~~---~~~~~~~~~~l~~~l~~~kr~ 199 (793)
.++.|+|..|.||||+|..+..+... |. ++.... .....+....+.+ ..++.-
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~d 80 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKID 80 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCC
Confidence 47789999999999999888766532 21 010000 0111222333333 233445
Q ss_pred EEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCCCCCCC-CCChhhHHHHH
Q 043214 200 LVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPDISGDY-AENEDLQSIAK 252 (793)
Q Consensus 200 LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~~~~~~-~~~~~~~~~~~ 252 (793)
+||+|.+.-. ++..++...+ ...|-.||+|.++.+..+.. ...+.+..++.
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD 134 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDFRGEPFEGSPYLLALAD 134 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcccccCcCchHHHHHHhcC
Confidence 8999999543 2222222221 34578899999987754433 23345555543
No 389
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.28 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
+.|+|||+.|+||+||.+.+.-
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhc
Confidence 6899999999999999998754
No 390
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.52 E-value=0.095 Score=47.41 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++|+|..|.|||||.+.+.....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 5899999999999999999887544
No 391
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.52 E-value=0.11 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
++|+|+|.+|+|||||+..+....+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~ 27 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSG 27 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999988775543
No 392
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.51 E-value=0.34 Score=44.62 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.....||=+.|.+|.||||+|.++++....
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 345679999999999999999999886544
No 393
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.51 E-value=0.1 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEecCCChHHHHHHHHHhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~ 167 (793)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 394
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.48 E-value=0.1 Score=49.31 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..|.|+|+.|.||||+|+.+.+....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999986543
No 395
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.46 E-value=0.1 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|.|.|..|.||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999997754
No 396
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.42 E-value=0.17 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=19.5
Q ss_pred eEEEEEec-CCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGM-AGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~-gGiGKTtLa~~v~~~~ 168 (793)
++|+|+|. ||+||||++..+....
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL 26 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWAL 26 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHH
Confidence 58999995 6699999998876643
No 397
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.41 E-value=0.11 Score=49.34 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++|+|..|.||||+++.+.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999988543
No 398
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.41 E-value=0.097 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.-|-|.|.+|.||||+|..+....
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh
Confidence 457899999999999999998643
No 399
>PRK13695 putative NTPase; Provisional
Probab=92.39 E-value=0.11 Score=49.35 Aligned_cols=24 Identities=50% Similarity=0.690 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.|+|+|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988654
No 400
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.35 E-value=0.12 Score=48.07 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+.|.|++|+|||||+++++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999987
No 401
>PLN02348 phosphoribulokinase
Probab=92.33 E-value=0.13 Score=54.32 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=24.6
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+..-+|||.|.+|.||||+|+.+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998865
No 402
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.29 E-value=1.1 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+||+++|..|+||||.+.++....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999988876433
No 403
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.27 E-value=0.12 Score=49.41 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|.|+|++|+|||||++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
No 404
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.22 E-value=0.11 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.|.|+|++|+||||+|+.+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999887543
No 405
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.29 Score=54.24 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=56.3
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-ee-----ccccccC
Q 043214 121 CYEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SF-----LMRSCLQ 180 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~-----~~~~~~~ 180 (793)
.|..+.|-++-+.+|-+.+. -+.++-|-.+|++|-||||+|+++.+.... | ++ ..++-.+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc
Confidence 45566677766655554433 145678999999999999999999998766 4 32 2222222
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 181 SESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 181 ~~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
+ +..+..++++-+.--...|.||.++.
T Consensus 512 S-Er~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 512 S-ERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred h-HHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 2 23344555554433568999998854
No 406
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.20 E-value=0.11 Score=48.00 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+-|.++||.|.||||+.+++.+...-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 35789999999999999999886544
No 407
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.20 E-value=0.099 Score=52.19 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=17.5
Q ss_pred EEecCCChHHHHHHHHHhhhh
Q 043214 149 VYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 149 I~G~gGiGKTtLa~~v~~~~~ 169 (793)
|+|++|.||||+++.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999887544
No 408
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.5 Score=50.92 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=47.0
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh-c-e--eccccccCChHHHHHHHHH----HHhcCCeEEEEEeCCCcccCcch
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-S--FLMRSCLQSESRRARRLCE----RLKKEKKILVILDNIWASLDFEK 214 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q--~~~~~~~~~~~~~~~~l~~----~l~~~kr~LlVLDdv~~~~~~~~ 214 (793)
.+..+-+.|.+|.|||+||..++....- | . ...+.-..++......+.+ ..+. .--.||+||+....+|-.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS-~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS-PLSIIVVDDIERLLDYVP 615 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC-cceEEEEcchhhhhcccc
Confidence 4567889999999999999999876543 3 1 1112223344433333333 3343 556899999988877755
Q ss_pred hc
Q 043214 215 VG 216 (793)
Q Consensus 215 l~ 216 (793)
++
T Consensus 616 IG 617 (744)
T KOG0741|consen 616 IG 617 (744)
T ss_pred cC
Confidence 43
No 409
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.25 Score=49.78 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=41.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-----c---e---------ecccccc--CChHHHHHHHHHHHhcC-CeEEEEEe
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-----I---S---------FLMRSCL--QSESRRARRLCERLKKE-KKILVILD 204 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-----f---q---------~~~~~~~--~~~~~~~~~l~~~l~~~-kr~LlVLD 204 (793)
++|-++|++|.|||+|.|++++.... + | ++.++.. .......++|.+.+... .=+++.+|
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 79999999999999999999998765 2 1 1122221 12345556666666542 34566778
Q ss_pred CCC
Q 043214 205 NIW 207 (793)
Q Consensus 205 dv~ 207 (793)
.|.
T Consensus 258 EVE 260 (423)
T KOG0744|consen 258 EVE 260 (423)
T ss_pred HHH
Confidence 774
No 410
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.19 E-value=0.11 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.|.++|++|.||||+|+.+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987654
No 411
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.17 E-value=0.18 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=19.9
Q ss_pred eEEEEEe-cCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYG-MAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G-~gGiGKTtLa~~v~~~~ 168 (793)
++|+|++ -||+||||+|..+....
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~l 26 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASAL 26 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHH
Confidence 5788887 89999999999877643
No 412
>PRK15453 phosphoribulokinase; Provisional
Probab=92.13 E-value=0.15 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|.|-+|.||||+|+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999887644
No 413
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.09 E-value=0.17 Score=53.05 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=36.4
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+..++|.+..++.+.-.+.+.+..-+-+.|.+|.||||+|+.+.+-.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45678998888877754443445568999999999999999987654
No 414
>PRK10037 cell division protein; Provisional
Probab=92.08 E-value=0.17 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=17.6
Q ss_pred eEEEEEe-cCCChHHHHHHHHHhh
Q 043214 145 NMIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
.+|++.+ -||+||||+|..+...
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~ 25 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWS 25 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHH
Confidence 3666665 6889999999887663
No 415
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.07 E-value=0.14 Score=44.63 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEecCCChHHHHHHHHHhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~ 168 (793)
|.+.|.||+||||++..+.+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999887754
No 416
>PRK06761 hypothetical protein; Provisional
Probab=92.06 E-value=0.12 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+|.|.|.+|.||||+|+.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 57999999999999999999987654
No 417
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.06 E-value=0.12 Score=55.93 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.7
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..-++.|+|+|..|.||||||+++.+..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998764
No 418
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.06 E-value=2.4 Score=44.35 Aligned_cols=105 Identities=9% Similarity=0.070 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh-----------------ce---------eccccccCChHH
Q 043214 132 LNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK-----------------IS---------FLMRSCLQSESR 184 (793)
Q Consensus 132 ~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-----------------fq---------~~~~~~~~~~~~ 184 (793)
.+.+.+.+..+.+ -.+-+.|+.|+||+++|+.+.+..-- |. +.......-..+
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id 90 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVD 90 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHH
Confidence 4555666655544 36779999999999999998764310 10 111011111233
Q ss_pred HHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 185 RARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 185 ~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.++.+.+.+. .+++=.+|+|++.... ..+.+...+..-.++..+|++|.+..
T Consensus 91 ~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~ 148 (325)
T PRK06871 91 QVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSA 148 (325)
T ss_pred HHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence 4445555543 2344567899998773 34444444433345667777777665
No 419
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.05 E-value=0.1 Score=49.70 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHHh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~ 166 (793)
+|+|+|+.|.||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 420
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.02 E-value=0.2 Score=46.93 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHHhC---CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 125 FESRMSTLNDVLNALN---NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
++|.+..+.++++.+. ..+ .-|-|+|-.|.||+.+|+.+++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 3566666777666554 334 4455999999999999999998543
No 421
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.00 E-value=0.22 Score=51.94 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=28.4
Q ss_pred HHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 132 LNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 132 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..++++.+. .....+|+|+|.+|.|||||+..+....
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554 3567899999999999999999977643
No 422
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.99 E-value=0.14 Score=50.12 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
...+.|.|+|.+|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999998764
No 423
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.98 E-value=1.2 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998777654
No 424
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.98 E-value=0.25 Score=51.64 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=28.8
Q ss_pred HHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 132 LNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 132 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+++.+. .+...+|+|.|.+|+|||||+..+....+
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555554 45678999999999999999998766544
No 425
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.97 E-value=0.13 Score=47.27 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+|++.|.+|+||||+++.+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999887664
No 426
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.96 E-value=0.11 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.|+++|.+|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998764
No 427
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.92 E-value=0.14 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988653
No 428
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.92 E-value=0.11 Score=51.51 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.-|+|+|.+|+|||||+..+.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 578999999999999999988754
No 429
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.82 E-value=0.13 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.1
Q ss_pred EEEEecCCChHHHHHHHHHhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~ 168 (793)
|.|.|++|.||||+|+.+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 430
>PLN02796 D-glycerate 3-kinase
Probab=91.77 E-value=0.16 Score=52.84 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=23.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+-+|+|.|..|.||||||+.+.....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 456899999999999999999887543
No 431
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=91.72 E-value=0.19 Score=56.76 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=37.5
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+..++|.+..++.+...+......-+-|+|..|+||||+|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557888888888887766555566789999999999999999864
No 432
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.72 E-value=0.16 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++.++|++|.||||+++.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999998877643
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.71 E-value=0.61 Score=54.99 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=81.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh-hh----------------c-eecccccc-CC-------hHHHHHHHHHHHhc-
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA-KK----------------I-SFLMRSCL-QS-------ESRRARRLCERLKK- 195 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----------------f-q~~~~~~~-~~-------~~~~~~~l~~~l~~- 195 (793)
+..++.|+|..|.||||+.+.+.-.. .. | |+...... ++ .......+...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 34799999999999999999986541 11 1 11111111 11 01111222222221
Q ss_pred CCeEEEEEeCCCcccCc---c----hhcCCCCCCCCCcEEEEeecCCCC----------------CCC--CCCChh----
Q 043214 196 EKKILVILDNIWASLDF---E----KVGIPFGDNHKGCKVLMTARNPDI----------------SGD--YAENED---- 246 (793)
Q Consensus 196 ~kr~LlVLDdv~~~~~~---~----~l~~~~~~~~~gs~IivTTR~~~~----------------~~~--~~~~~~---- 246 (793)
.++-|+++|......+. . .+...+ ...|+.+|+||..... +.. ..+...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~G 478 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLKG 478 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECCC
Confidence 25789999998765332 1 122222 2357889999997650 000 000000
Q ss_pred --hHHHHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHHHcC
Q 043214 247 --LQSIAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQELRR 289 (793)
Q Consensus 247 --~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~l~~ 289 (793)
-...|-.|++++ |+|-.+.--|..+.+........+++.+..
T Consensus 479 ~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 479 IPGESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 124677888876 799998888888876655566666666543
No 434
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.69 E-value=0.4 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.5
Q ss_pred CceEEEEEecCCChHHHHHHHHH
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAP 165 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~ 165 (793)
...+|.|.|+.|.||||+|+.+.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999999985
No 435
>PRK14532 adenylate kinase; Provisional
Probab=91.66 E-value=0.13 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred EEEEecCCChHHHHHHHHHhhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
|.|.|++|.||||+|+.+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 77899999999999999987653
No 436
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=91.64 E-value=0.57 Score=52.88 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=38.7
Q ss_pred CcccccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 121 CYEAFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
....++|+...++++.+.+. ...-.-|-|+|-.|.|||++|+.+++...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 44568899988888887776 23345788999999999999999988643
No 437
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=91.62 E-value=0.17 Score=49.38 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+....|+|+|.+|+|||||.+.+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 45679999999999999999988774
No 438
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.60 E-value=1 Score=47.03 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCCce-EEEEEecCCChHHHHHHHHHhhhhh--------------c--------e-ecccccc-------
Q 043214 131 TLNDVLNALNNPNVN-MIGVYGMAGVGKTKLVKEAPRLAKK--------------I--------S-FLMRSCL------- 179 (793)
Q Consensus 131 ~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------f--------q-~~~~~~~------- 179 (793)
..+.+...+..+.+. .+-++|..|+||+|+|..+.+..-- | . +....+.
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~ 91 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRT 91 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccc
Confidence 355666666666555 5889999999999999887653210 1 1 1100110
Q ss_pred CChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 180 QSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 180 ~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.-..+.++.+.+.+. .+++=++|+|++.... .-+.+...+..-.+++.+|++|.+..
T Consensus 92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 011233444444443 2345588999998763 23333333322235677888887665
No 439
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.55 E-value=0.16 Score=56.36 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=23.5
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+++.+|+|.|..|.||||||+.+...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 356789999999999999999998763
No 440
>CHL00175 minD septum-site determining protein; Validated
Probab=91.51 E-value=0.25 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=19.6
Q ss_pred ceEEEEEe-cCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
.+||+|+| .||+||||+|..+...
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~ 39 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMS 39 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHH
Confidence 46888877 8999999999887653
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.47 E-value=0.15 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
-.|++|+|+.|.|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35999999999999999998865
No 442
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.44 E-value=0.25 Score=49.57 Aligned_cols=37 Identities=32% Similarity=0.604 Sum_probs=28.6
Q ss_pred HHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 133 NDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 133 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++..+. .++..||||.|.||+||+||.-++-..+.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~ 76 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR 76 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH
Confidence 45555554 56778999999999999999887766543
No 443
>PRK14531 adenylate kinase; Provisional
Probab=91.44 E-value=0.17 Score=48.48 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+.|.|+|++|.||||+|+.+.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987653
No 444
>PRK08356 hypothetical protein; Provisional
Probab=91.43 E-value=0.17 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred ceEEEEEecCCChHHHHHHHHH
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAP 165 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~ 165 (793)
..+|+|.|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999994
No 445
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=91.43 E-value=0.33 Score=46.37 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=43.3
Q ss_pred hhhhhHhhhhhcCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 109 CYQFSKKAAKEWCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 109 ~~~~~~~i~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+++++.-++....++.....++-.....+.|..++-..+|+.|.||.||+|++..+.+.
T Consensus 84 ~~~va~~~~~qv~~~D~s~~de~y~~~~e~L~~n~~~l~glag~pGtgkst~~a~v~~a 142 (323)
T KOG2702|consen 84 PNKVAEMIENQVLFKDHSEDDEFYPVKYEALTSNNEELTGLAGRPGTGKSTRIAAVDNA 142 (323)
T ss_pred hhHHHHHHHhcccccCcchhhhhhHHHHHHhcccchheeeeecCCCCcchhHHHHHHhh
Confidence 45555555443344444455555667778888777889999999999999999999874
No 446
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.38 E-value=0.16 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+.|.++|..|.|||||++++-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999997644
No 447
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=91.36 E-value=0.3 Score=51.08 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
...++|.|+|-||+||||+|..+...
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~ 54 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYM 54 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998876653
No 448
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.31 E-value=0.15 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+....
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998643
No 449
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=91.30 E-value=0.68 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.|+|+|.+|+|||||...+.+.
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36889999999999999999875
No 450
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.30 E-value=0.16 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|+|.|-.|.||||+|+++.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887654
No 451
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=91.30 E-value=0.34 Score=44.92 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.2
Q ss_pred eEEEEEe-cCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYG-MAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G-~gGiGKTtLa~~v~~~~~ 169 (793)
++|++|| .||+||||+|..+.....
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la 26 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALA 26 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 5899999 778999999999877543
No 452
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=91.30 E-value=0.58 Score=45.77 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCceEEEEEe-cCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
...++|+|+| .||+||||+|..+...
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~ 59 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAIS 59 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 3578999996 8899999998887663
No 453
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=91.29 E-value=0.25 Score=47.01 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=16.6
Q ss_pred EEEE-ecCCChHHHHHHHHHhhh
Q 043214 147 IGVY-GMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 147 i~I~-G~gGiGKTtLa~~v~~~~ 168 (793)
|+|. +.||+||||+|..+....
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l 24 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTAL 24 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 3444 589999999999876643
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.28 E-value=0.16 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987643
No 455
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=91.28 E-value=0.42 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=23.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-+.++|+|..|+|||||++.+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 346889999999999999999987554
No 456
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.27 E-value=0.63 Score=45.46 Aligned_cols=26 Identities=42% Similarity=0.661 Sum_probs=22.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+.++|.|.+|.|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 68999999999999999998876553
No 457
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=91.22 E-value=3.1 Score=46.88 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=39.3
Q ss_pred cccccccHHHHHHHHHHhC----C-CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLNDVLNALN----N-PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+.+|+.+..+|-..+. + +.-+.+-|.|.+|.|||..+..|-+...
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq 447 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQ 447 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHH
Confidence 4456789999999988776 3 4455899999999999999999988554
No 458
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.21 E-value=0.18 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|+|.|+.|.||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987654
No 459
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.84 Score=44.52 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=54.4
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c------eeccccccC
Q 043214 121 CYEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I------SFLMRSCLQ 180 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f------q~~~~~~~~ 180 (793)
.|..+.|-+..++++++.+. -..+.-+-.+|++|.|||-+|++.+..-.. | |+-..+. .
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfI-G 247 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI-G 247 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhh-c
Confidence 36678899999999988764 123457789999999999999998776544 4 2111110 0
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCC
Q 043214 181 SESRRARRLCERLKKEKKILVILDNIW 207 (793)
Q Consensus 181 ~~~~~~~~l~~~l~~~kr~LlVLDdv~ 207 (793)
+-......-+..-+.+....|++|.++
T Consensus 248 dGAkLVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 248 DGAKLVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred chHHHHHHHHHHhhccCCeEEEEechh
Confidence 111222222222345567889999875
No 460
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.14 E-value=0.18 Score=47.82 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=22.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|..|.|||||++.+..-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35999999999999999999986543
No 461
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.13 E-value=0.16 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+....
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999998754
No 462
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.12 E-value=0.27 Score=51.38 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-..|.++||.|.||||+++.+.+...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987643
No 463
>PHA02518 ParA-like protein; Provisional
Probab=91.11 E-value=0.29 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.6
Q ss_pred EEEEEe-cCCChHHHHHHHHHhh
Q 043214 146 MIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
+|+|++ -||+||||+|..+...
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~ 24 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASW 24 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHH
Confidence 677875 6779999999887653
No 464
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.08 E-value=0.16 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+....
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987643
No 465
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.05 E-value=0.21 Score=48.43 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987654
No 466
>PRK02496 adk adenylate kinase; Provisional
Probab=91.02 E-value=0.21 Score=47.93 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|.|+|++|.||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 467
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.01 E-value=0.18 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEecCCChHHHHHHHHHhhhhh
Q 043214 149 VYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 149 I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
|+|.+|+||||+|+.+.+...-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 7899999999999999987643
No 468
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.00 E-value=0.16 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.|+|+|.+|+|||||++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 469
>PLN02165 adenylate isopentenyltransferase
Probab=90.99 E-value=0.18 Score=52.24 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=24.7
Q ss_pred CCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 140 NNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 140 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
....-.+|+|+|+.|+||||||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 334456999999999999999999988743
No 470
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.99 E-value=0.17 Score=47.86 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.4
Q ss_pred ceEEEEEecCCChHHHHHHHHH
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAP 165 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~ 165 (793)
-.+++|+|..|.|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999998764
No 471
>PRK12338 hypothetical protein; Provisional
Probab=90.91 E-value=0.21 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+.+|.|.|.+|+||||+|+.+....
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5799999999999999999998864
No 472
>PRK01184 hypothetical protein; Provisional
Probab=90.90 E-value=0.17 Score=48.44 Aligned_cols=19 Identities=47% Similarity=0.779 Sum_probs=17.1
Q ss_pred eEEEEEecCCChHHHHHHH
Q 043214 145 NMIGVYGMAGVGKTKLVKE 163 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~ 163 (793)
.+|+|+|++|.||||+|+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999873
No 473
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.90 E-value=0.49 Score=52.76 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=40.5
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhhhhhceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.....+|.++|.+|.||||+|+.++.......++.+.. ...........+.|..++. +|+|+..-.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-g~~~~~~~~a~~~L~~G~s--VVIDaTn~~ 431 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-GSTQNCLTACERALDQGKR--CAIDNTNPD 431 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-HHHHHHHHHHHHHHhCCCc--EEEECCCCC
Confidence 34678999999999999999999887432100111100 0112233445566766554 688998654
No 474
>PRK14528 adenylate kinase; Provisional
Probab=90.89 E-value=0.21 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+.|.|.|.+|.||||+|+.+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999987654
No 475
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.89 E-value=0.17 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-|.++|.+|+|||||+..+.+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 476
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=90.85 E-value=0.18 Score=50.33 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|+.|.|||||.+.++.-.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46999999999999999999988544
No 477
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.84 E-value=0.18 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+....
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 478
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.83 E-value=0.2 Score=49.45 Aligned_cols=26 Identities=27% Similarity=0.639 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.. .+++|+|..|.|||||++.+....
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999988653
No 479
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=90.80 E-value=0.42 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-..++|+|..|.|||||++.+.+..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC
Confidence 3689999999999999999998654
No 480
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.79 E-value=0.2 Score=49.37 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=21.5
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.|.|.|++|.||||+|+.+......
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999876543
No 481
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.76 E-value=0.18 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.2
Q ss_pred EEEEecCCChHHHHHHHHHhhhh
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
|.|.|++|.||||+|+.+.+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987543
No 482
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=90.70 E-value=0.25 Score=47.28 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|.|.|.+|.||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999988754
No 483
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.67 E-value=0.19 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.|+|+|.+|+|||||++++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
No 484
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.67 E-value=0.2 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..+|+++|..|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998653
No 485
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.64 E-value=0.23 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|+|.|..|.||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999988754
No 486
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=90.61 E-value=0.31 Score=51.98 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+-|-++|++|+||||+|+.+......
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468899999999999999999987665
No 487
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=90.61 E-value=0.42 Score=48.14 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-+.++|.|-.|+|||||+..+.+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 346889999999999999998887653
No 488
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.61 E-value=0.2 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|.++|.+|.||||+|+.+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998876
No 489
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.61 E-value=0.17 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|+|.|..|.|||||++.+....
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999887643
No 490
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=90.57 E-value=0.35 Score=46.77 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
++-+++.|.|.+|.||||+++.+.+....
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 44478899999999999999998765543
No 491
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.54 E-value=0.2 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998764
No 492
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.54 E-value=0.59 Score=48.56 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=20.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-+++-|+|.+|+||||||.++....
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3699999999999999998865543
No 493
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=90.53 E-value=0.22 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..||+|+|..|.|||||+..+....+.
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 469999999999999999999876653
No 494
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.52 E-value=0.2 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+....
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999988643
No 495
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=90.52 E-value=0.95 Score=45.47 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=55.0
Q ss_pred ccccHHHHHHHHHHhC----C---CCceEEEEEecCCChHHHHHHHHHhhhhh----------ceeccccccCC-----h
Q 043214 125 FESRMSTLNDVLNALN----N---PNVNMIGVYGMAGVGKTKLVKEAPRLAKK----------ISFLMRSCLQS-----E 182 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----------fq~~~~~~~~~-----~ 182 (793)
+.|-.-..+-++..+. + ..+-|++.+|..|.||.-.|+.+.+..-. |--...+...+ .
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 5566666666666554 2 34569999999999999999998875432 11111111111 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
++....+++.+..-+|-|.|+|+|+..
T Consensus 164 ~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 164 EELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHhcCCceEEechhhhc
Confidence 344555666665557899999999987
No 496
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=90.49 E-value=0.2 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+|+|+||.|.||||.|+.+-..
T Consensus 2 iI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhc
Confidence 7999999999999999998543
No 497
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.46 E-value=0.19 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++.|+|.+|.||||+|+.+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999987654
No 498
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.43 E-value=0.2 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+....
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998644
No 499
>PRK08149 ATP synthase SpaL; Validated
Probab=90.43 E-value=0.49 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=22.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-+.++|+|..|.|||||++.+.+...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC
Confidence 46899999999999999999986443
No 500
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=90.43 E-value=0.27 Score=48.41 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
++|+|+|..|+||||++..+....+.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~ 27 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKE 27 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHh
Confidence 68999999999999999988776543
Done!