Query 043214
Match_columns 793
No_of_seqs 380 out of 4194
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.7E-38 3.3E-42 353.2 10.5 254 126-402 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-31 2.9E-35 328.9 24.8 260 121-401 122-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.1E-30 3.8E-35 297.5 15.9 237 125-394 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-27 4.5E-32 274.7 20.9 256 121-397 122-448 (591)
5 4fmz_A Internalin; leucine ric 99.9 6E-25 2E-29 235.2 24.0 305 419-784 40-344 (347)
6 4ecn_A Leucine-rich repeat pro 99.9 1.8E-25 6.3E-30 262.3 21.6 309 444-784 490-838 (876)
7 4eco_A Uncharacterized protein 99.9 3E-25 1E-29 256.3 20.0 315 443-784 204-577 (636)
8 4ecn_A Leucine-rich repeat pro 99.9 5.4E-25 1.8E-29 258.3 22.2 323 441-790 444-822 (876)
9 1o6v_A Internalin A; bacterial 99.9 2.7E-24 9.3E-29 239.5 26.9 320 420-784 65-386 (466)
10 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-24 4.4E-29 251.2 24.5 347 420-784 29-508 (606)
11 1o6v_A Internalin A; bacterial 99.9 4.1E-24 1.4E-28 238.1 27.7 320 420-784 43-364 (466)
12 3t6q_A CD180 antigen; protein- 99.9 2.9E-24 1E-28 248.1 26.9 278 420-702 30-387 (606)
13 3v47_A TOLL-like receptor 5B a 99.9 1.2E-24 4.2E-29 242.0 22.0 347 421-784 28-406 (455)
14 3o6n_A APL1; leucine-rich repe 99.9 3.3E-24 1.1E-28 233.3 24.5 304 442-784 42-350 (390)
15 2z63_A TOLL-like receptor 4, v 99.9 1.6E-24 5.4E-29 248.6 22.9 156 420-578 25-191 (570)
16 2z81_A CD282 antigen, TOLL-lik 99.9 4.8E-24 1.6E-28 243.3 26.2 349 422-784 25-508 (549)
17 3rgz_A Protein brassinosteroid 99.9 1.2E-24 4.2E-29 257.2 21.5 335 423-786 178-551 (768)
18 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-24 2.8E-28 239.5 27.0 130 423-558 21-159 (520)
19 4eco_A Uncharacterized protein 99.9 1.3E-24 4.6E-29 250.9 20.2 332 420-783 203-597 (636)
20 3rgz_A Protein brassinosteroid 99.9 3.1E-24 1.1E-28 253.8 23.4 337 423-784 294-715 (768)
21 3oja_B Anopheles plasmodium-re 99.9 6.7E-24 2.3E-28 243.7 24.3 304 442-784 48-356 (597)
22 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-23 4E-28 243.1 26.2 152 425-580 13-169 (606)
23 3t6q_A CD180 antigen; protein- 99.9 1.6E-23 5.5E-28 241.9 25.6 275 490-784 274-558 (606)
24 2z81_A CD282 antigen, TOLL-lik 99.9 1E-23 3.4E-28 240.6 22.8 350 428-789 10-466 (549)
25 2id5_A Lingo-1, leucine rich r 99.9 7.2E-23 2.4E-27 229.1 27.5 308 426-758 14-331 (477)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.2E-23 1.5E-27 235.7 25.1 142 426-576 34-181 (562)
27 4fmz_A Internalin; leucine ric 99.9 6.8E-23 2.3E-27 219.2 25.1 284 417-758 60-344 (347)
28 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-22 3.6E-27 243.2 27.4 156 421-578 22-188 (844)
29 3v47_A TOLL-like receptor 5B a 99.9 5.3E-23 1.8E-27 228.8 23.1 324 420-764 51-412 (455)
30 3o6n_A APL1; leucine-rich repe 99.9 5.9E-23 2E-27 223.3 21.4 303 421-762 43-353 (390)
31 3bz5_A Internalin-J, INLJ; leu 99.9 2.6E-22 8.8E-27 221.7 26.0 303 419-763 38-354 (457)
32 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-22 8.9E-27 235.1 26.1 355 421-784 23-441 (680)
33 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-22 7.5E-27 235.7 25.2 345 419-784 45-465 (680)
34 2id5_A Lingo-1, leucine rich r 99.9 4.5E-22 1.5E-26 222.6 26.0 306 448-784 14-331 (477)
35 2z63_A TOLL-like receptor 4, v 99.9 1.3E-22 4.5E-27 232.6 21.8 336 426-784 10-432 (570)
36 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-22 7.6E-27 240.4 23.8 327 427-783 8-391 (844)
37 3oja_B Anopheles plasmodium-re 99.9 2.3E-22 7.8E-27 230.9 21.7 300 421-758 49-356 (597)
38 1xku_A Decorin; proteoglycan, 99.9 1.3E-21 4.4E-26 207.6 22.8 290 446-783 32-329 (330)
39 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-22 1.1E-26 212.3 17.4 290 446-784 34-331 (332)
40 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-21 6.4E-26 220.2 24.3 143 426-576 3-150 (520)
41 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-21 9.4E-26 224.7 25.8 348 420-782 49-576 (635)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-21 9.7E-26 220.6 20.8 342 421-784 50-508 (562)
43 4fcg_A Uncharacterized protein 99.9 3.7E-21 1.3E-25 203.2 18.7 230 469-755 79-309 (328)
44 4g8a_A TOLL-like receptor 4; l 99.9 3.7E-20 1.3E-24 215.1 27.6 149 427-579 35-188 (635)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-20 4.1E-25 200.2 20.7 293 423-758 33-331 (332)
46 1jl5_A Outer protein YOPM; leu 99.9 3E-20 1E-24 205.0 24.4 281 422-762 90-371 (454)
47 1xku_A Decorin; proteoglycan, 99.9 3.8E-20 1.3E-24 196.2 24.2 292 423-757 31-329 (330)
48 3bz5_A Internalin-J, INLJ; leu 99.9 5.2E-20 1.8E-24 203.2 26.0 320 418-781 59-407 (457)
49 1jl5_A Outer protein YOPM; leu 99.8 9.6E-20 3.3E-24 200.9 26.3 298 423-784 71-368 (454)
50 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-20 5.1E-25 197.3 14.7 154 445-612 50-210 (313)
51 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-20 5.1E-25 197.3 14.5 176 423-613 50-235 (313)
52 4fcg_A Uncharacterized protein 99.8 8.8E-20 3E-24 192.6 19.0 230 493-782 80-310 (328)
53 2z66_A Variable lymphocyte rec 99.8 8.7E-20 3E-24 191.2 16.3 242 426-702 10-259 (306)
54 2z80_A TOLL-like receptor 2, v 99.8 1.2E-19 4.1E-24 194.2 17.2 251 472-759 53-313 (353)
55 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 8E-24 192.0 19.0 258 428-702 36-312 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.8 1E-18 3.5E-23 198.6 24.0 255 423-757 40-294 (622)
57 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-18 4E-23 198.1 24.3 258 445-786 40-297 (622)
58 3zyj_A Leucine-rich repeat-con 99.8 3.4E-19 1.1E-23 196.8 18.5 242 425-702 45-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.8 5.4E-19 1.9E-23 195.8 19.0 242 425-702 56-301 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.8 7E-20 2.4E-24 192.7 6.8 268 443-762 32-301 (317)
61 3zyi_A Leucine-rich repeat-con 99.8 3.9E-18 1.3E-22 188.9 19.7 241 447-730 56-300 (452)
62 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-20 1.1E-24 206.6 1.7 348 421-784 26-438 (461)
63 1ozn_A Reticulon 4 receptor; N 99.8 4.6E-18 1.6E-22 176.1 17.0 219 426-677 14-237 (285)
64 3zyj_A Leucine-rich repeat-con 99.8 6E-18 2.1E-22 186.7 18.9 241 447-730 45-289 (440)
65 1ozn_A Reticulon 4 receptor; N 99.8 6.8E-18 2.3E-22 174.8 17.2 180 422-615 31-217 (285)
66 2z66_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 178.9 14.8 218 448-702 10-234 (306)
67 1z7x_W Ribonuclease inhibitor; 99.8 5.5E-20 1.9E-24 204.8 -0.8 348 422-784 2-409 (461)
68 3o53_A Protein LRIM1, AGAP0063 99.7 8.5E-19 2.9E-23 184.4 7.7 262 450-763 15-278 (317)
69 3ogk_B Coronatine-insensitive 99.7 1.7E-18 5.7E-23 199.4 9.0 297 468-784 189-524 (592)
70 2z62_A TOLL-like receptor 4, v 99.7 1.3E-16 4.5E-21 164.2 18.7 175 430-616 14-194 (276)
71 1wwl_A Monocyte differentiatio 99.7 3.8E-18 1.3E-22 179.0 6.8 243 445-757 43-306 (312)
72 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.1E-22 183.6 13.3 239 443-730 32-272 (487)
73 2p1m_B Transport inhibitor res 99.7 9.6E-18 3.3E-22 193.1 8.3 340 422-785 104-518 (594)
74 1wwl_A Monocyte differentiatio 99.7 5.2E-18 1.8E-22 178.0 5.0 247 422-702 42-307 (312)
75 3oja_A Leucine-rich immune mol 99.7 2.2E-17 7.7E-22 183.8 9.1 235 421-699 32-270 (487)
76 3ogk_B Coronatine-insensitive 99.7 5.6E-17 1.9E-21 186.6 12.7 342 421-782 162-547 (592)
77 2o6q_A Variable lymphocyte rec 99.7 7.8E-16 2.7E-20 157.7 18.8 180 423-617 16-199 (270)
78 2o6q_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 158.9 17.1 124 447-576 18-145 (270)
79 1p9a_G Platelet glycoprotein I 99.7 5.5E-16 1.9E-20 160.3 17.1 183 421-619 8-192 (290)
80 1h6u_A Internalin H; cell adhe 99.7 7.3E-16 2.5E-20 161.0 18.1 189 419-629 37-225 (308)
81 1h6u_A Internalin H; cell adhe 99.7 5.3E-16 1.8E-20 162.1 15.9 153 441-615 37-189 (308)
82 1p9a_G Platelet glycoprotein I 99.7 4E-16 1.4E-20 161.3 14.8 198 443-676 8-206 (290)
83 3rfs_A Internalin B, repeat mo 99.7 2.2E-16 7.5E-21 162.0 11.8 156 443-615 39-197 (272)
84 3rfs_A Internalin B, repeat mo 99.7 5.5E-16 1.9E-20 159.0 13.7 136 468-616 38-174 (272)
85 2xwt_C Thyrotropin receptor; s 99.7 3.4E-16 1.1E-20 157.3 11.8 138 435-577 23-169 (239)
86 2z62_A TOLL-like receptor 4, v 99.6 1.8E-15 6.1E-20 155.7 15.6 183 421-618 26-219 (276)
87 2xwt_C Thyrotropin receptor; s 99.6 8.2E-16 2.8E-20 154.5 12.6 192 421-628 29-233 (239)
88 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.2E-20 166.2 10.1 95 656-765 214-310 (336)
89 4ay9_X Follicle-stimulating ho 99.6 4E-15 1.4E-19 158.6 17.4 101 474-576 12-116 (350)
90 1h6t_A Internalin B; cell adhe 99.6 6.4E-15 2.2E-19 152.4 17.3 176 419-616 42-217 (291)
91 2p1m_B Transport inhibitor res 99.6 3E-16 1E-20 180.5 7.6 357 421-785 64-493 (594)
92 3m19_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 148.0 16.8 176 423-613 14-193 (251)
93 4glp_A Monocyte differentiatio 99.6 1.5E-15 5.1E-20 159.1 7.5 229 443-703 62-306 (310)
94 1h6t_A Internalin B; cell adhe 99.6 1E-14 3.4E-19 150.9 12.4 181 428-630 29-209 (291)
95 1m9s_A Internalin B; cell inva 99.6 2E-14 6.8E-19 163.2 15.8 176 419-616 39-214 (605)
96 2ast_B S-phase kinase-associat 99.6 2.9E-15 1E-19 159.0 8.3 61 664-736 246-308 (336)
97 4ay9_X Follicle-stimulating ho 99.6 3E-14 1E-18 151.8 15.2 236 448-729 12-255 (350)
98 2ca6_A RAN GTPase-activating p 99.5 9.4E-16 3.2E-20 166.1 1.8 138 468-612 29-200 (386)
99 2ca6_A RAN GTPase-activating p 99.5 3.6E-15 1.2E-19 161.4 6.1 239 422-679 31-317 (386)
100 4glp_A Monocyte differentiatio 99.5 2.3E-14 7.8E-19 150.0 11.2 228 470-733 63-306 (310)
101 3goz_A Leucine-rich repeat-con 99.5 1.1E-14 3.9E-19 155.9 8.0 213 468-702 19-264 (362)
102 1m9s_A Internalin B; cell inva 99.5 2.1E-14 7.1E-19 163.0 10.5 187 424-632 22-208 (605)
103 4ezg_A Putative uncharacterize 99.5 7.6E-14 2.6E-18 135.4 12.6 150 443-612 42-194 (197)
104 3m19_A Variable lymphocyte rec 99.5 2E-13 7E-18 138.0 16.0 156 421-579 33-194 (251)
105 3e6j_A Variable lymphocyte rec 99.5 2.3E-13 8E-18 135.3 16.1 151 424-578 20-173 (229)
106 1xeu_A Internalin C; cellular 99.5 5.8E-14 2E-18 142.8 11.2 173 421-616 17-189 (263)
107 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.8E-18 134.2 12.2 151 419-577 40-194 (197)
108 3cvr_A Invasion plasmid antige 99.5 1.6E-13 5.3E-18 154.0 14.8 134 424-577 60-193 (571)
109 3goz_A Leucine-rich repeat-con 99.5 1.7E-14 5.8E-19 154.5 5.2 243 430-702 5-295 (362)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-13 1.2E-17 132.9 14.0 150 425-578 13-167 (220)
111 2v9t_B SLIT homolog 2 protein 99.5 5E-13 1.7E-17 131.9 14.1 148 426-577 14-165 (220)
112 3cvr_A Invasion plasmid antige 99.4 1.1E-12 3.7E-17 147.2 17.1 192 445-685 59-250 (571)
113 2o6s_A Variable lymphocyte rec 99.4 4.5E-13 1.5E-17 131.2 11.4 170 426-617 10-184 (208)
114 2o6s_A Variable lymphocyte rec 99.4 2.3E-12 7.7E-17 126.2 15.7 150 422-581 27-182 (208)
115 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.9E-17 133.2 13.8 151 419-579 37-187 (263)
116 2v9t_B SLIT homolog 2 protein 99.4 9.7E-13 3.3E-17 129.8 11.5 147 448-611 14-164 (220)
117 2xot_A Amphoterin-induced prot 99.4 9.7E-13 3.3E-17 140.6 11.7 171 426-611 21-201 (361)
118 2ell_A Acidic leucine-rich nuc 99.4 1.5E-12 5.1E-17 122.6 10.8 139 470-617 23-165 (168)
119 2v70_A SLIT-2, SLIT homolog 2 99.4 2.4E-12 8.2E-17 127.0 12.6 148 448-612 14-166 (220)
120 3e6j_A Variable lymphocyte rec 99.4 2.9E-12 9.8E-17 127.3 12.8 148 447-612 21-172 (229)
121 2xot_A Amphoterin-induced prot 99.4 2.2E-12 7.6E-17 137.9 11.7 156 420-578 36-203 (361)
122 1dce_A Protein (RAB geranylger 99.3 3.5E-14 1.2E-18 160.2 -4.7 183 422-618 348-552 (567)
123 2ell_A Acidic leucine-rich nuc 99.3 7.2E-12 2.5E-16 117.9 10.2 129 445-576 24-159 (168)
124 3qfl_A MLA10; coiled-coil, (CC 99.3 3.1E-12 1.1E-16 110.0 6.9 77 11-94 5-82 (115)
125 1w8a_A SLIT protein; signaling 99.3 1.6E-11 5.3E-16 118.3 11.2 105 472-577 30-139 (192)
126 2je0_A Acidic leucine-rich nuc 99.3 4.8E-12 1.6E-16 116.5 7.0 106 470-577 16-126 (149)
127 2je0_A Acidic leucine-rich nuc 99.3 1.5E-11 5.3E-16 113.1 10.3 102 468-571 39-147 (149)
128 2wfh_A SLIT homolog 2 protein 99.3 3.4E-11 1.1E-15 115.9 12.7 123 449-577 14-139 (193)
129 4b8c_D Glucose-repressible alc 99.3 2.6E-12 9E-17 149.6 5.8 156 423-581 173-333 (727)
130 4b8c_D Glucose-repressible alc 99.2 8.6E-12 2.9E-16 145.3 9.8 135 443-581 222-358 (727)
131 1a9n_A U2A', U2A'; complex (nu 99.2 4.8E-12 1.6E-16 120.1 6.3 134 468-611 16-152 (176)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 5E-16 116.8 9.6 135 438-577 12-153 (176)
133 1w8a_A SLIT protein; signaling 99.2 6.5E-11 2.2E-15 113.9 11.9 129 425-556 10-143 (192)
134 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 110.4 12.8 105 472-577 29-137 (177)
135 2wfh_A SLIT homolog 2 protein 99.2 1.8E-10 6E-15 110.9 13.0 124 425-552 12-139 (193)
136 1dce_A Protein (RAB geranylger 99.2 8.9E-11 3.1E-15 132.4 12.0 102 473-577 443-546 (567)
137 1ds9_A Outer arm dynein; leuci 99.1 3.5E-12 1.2E-16 123.7 -1.2 140 461-605 39-180 (198)
138 2o6r_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 107.6 12.4 129 425-556 9-141 (177)
139 1ds9_A Outer arm dynein; leuci 99.1 6.2E-12 2.1E-16 121.9 -2.2 132 435-570 37-180 (198)
140 3sb4_A Hypothetical leucine ri 99.1 3.7E-10 1.3E-14 118.9 11.3 280 470-780 24-328 (329)
141 3g39_A Variable lymphocyte rec 99.0 1.9E-09 6.4E-14 101.3 10.5 102 473-577 11-115 (170)
142 2r9u_A Variable lymphocyte rec 99.0 1.9E-09 6.7E-14 101.6 10.7 101 474-577 15-118 (174)
143 2r9u_A Variable lymphocyte rec 98.9 5.3E-09 1.8E-13 98.5 10.4 100 448-552 15-118 (174)
144 3g39_A Variable lymphocyte rec 98.9 5.6E-09 1.9E-13 98.0 10.0 100 448-552 12-115 (170)
145 2qen_A Walker-type ATPase; unk 98.9 2.5E-08 8.6E-13 105.8 15.2 241 122-394 11-348 (350)
146 4fdw_A Leucine rich hypothetic 98.8 1.9E-07 6.5E-12 100.4 21.8 122 444-574 112-236 (401)
147 3sb4_A Hypothetical leucine ri 98.8 6.1E-09 2.1E-13 109.6 9.7 158 444-618 100-316 (329)
148 2fna_A Conserved hypothetical 98.8 6.4E-08 2.2E-12 102.9 17.0 242 122-393 12-355 (357)
149 1w5s_A Origin recognition comp 98.8 1.9E-08 6.4E-13 109.5 12.1 237 123-377 22-370 (412)
150 4fdw_A Leucine rich hypothetic 98.7 2.1E-07 7.1E-12 100.1 16.6 235 445-729 135-379 (401)
151 3un9_A NLR family member X1; l 98.6 5.1E-09 1.8E-13 111.5 1.6 134 471-612 101-252 (372)
152 1njg_A DNA polymerase III subu 98.6 4.8E-08 1.6E-12 97.7 8.6 116 121-236 21-167 (250)
153 2chg_A Replication factor C sm 98.6 1.3E-07 4.5E-12 93.0 9.2 114 122-236 16-143 (226)
154 2ifg_A High affinity nerve gro 98.5 1.5E-07 5.1E-12 99.7 9.6 88 461-550 23-114 (347)
155 3un9_A NLR family member X1; l 98.5 1.6E-08 5.5E-13 107.7 1.3 157 420-578 69-253 (372)
156 4fs7_A Uncharacterized protein 98.5 3.1E-06 1E-10 91.2 18.6 299 443-780 69-373 (394)
157 2ifg_A High affinity nerve gro 98.5 2.2E-07 7.7E-12 98.3 9.0 97 477-576 14-115 (347)
158 2ra8_A Uncharacterized protein 98.4 2.2E-07 7.5E-12 98.0 6.0 161 443-612 137-320 (362)
159 2qby_B CDC6 homolog 3, cell di 98.4 2E-05 6.7E-10 84.5 21.5 112 123-235 20-174 (384)
160 4fs7_A Uncharacterized protein 98.3 2.7E-05 9.2E-10 83.7 19.6 313 423-778 71-393 (394)
161 2v1u_A Cell division control p 98.3 2.2E-05 7.6E-10 84.2 18.8 114 122-235 18-177 (387)
162 1sxj_B Activator 1 37 kDa subu 98.3 3.1E-06 1.1E-10 88.4 11.2 113 122-236 20-148 (323)
163 2ra8_A Uncharacterized protein 98.2 6E-07 2.1E-11 94.7 4.7 177 594-784 134-318 (362)
164 2qby_A CDC6 homolog 1, cell di 98.2 1.4E-05 4.8E-10 85.7 15.5 114 122-235 19-173 (386)
165 3e4g_A ATP synthase subunit S, 98.2 5E-07 1.7E-11 83.5 3.2 91 666-762 62-154 (176)
166 3e4g_A ATP synthase subunit S, 98.2 4.9E-07 1.7E-11 83.5 3.1 92 691-788 61-154 (176)
167 1jbk_A CLPB protein; beta barr 98.1 4.4E-06 1.5E-10 79.7 7.9 49 120-168 19-67 (195)
168 1iqp_A RFCS; clamp loader, ext 98.1 3.4E-06 1.2E-10 88.3 7.0 114 122-236 24-151 (327)
169 1fnn_A CDC6P, cell division co 98.0 5E-05 1.7E-09 81.5 14.6 113 123-235 17-169 (389)
170 1hqc_A RUVB; extended AAA-ATPa 98.0 6.6E-06 2.3E-10 86.0 7.2 84 121-209 10-102 (324)
171 4gt6_A Cell surface protein; l 97.8 0.0035 1.2E-07 67.0 24.7 123 443-573 61-191 (394)
172 2p65_A Hypothetical protein PF 97.8 2.9E-05 9.9E-10 73.5 7.4 49 120-168 19-67 (187)
173 2chq_A Replication factor C sm 97.8 0.00013 4.6E-09 75.7 13.1 115 122-236 16-143 (319)
174 1d2n_A N-ethylmaleimide-sensit 97.8 0.00017 5.9E-09 72.9 13.0 86 124-209 34-136 (272)
175 3h4m_A Proteasome-activating n 97.8 2.8E-05 9.7E-10 79.4 6.9 89 121-209 15-122 (285)
176 1io0_A Tropomodulin; LRR prote 97.7 1.7E-05 6E-10 75.0 4.1 109 467-576 32-163 (185)
177 1jr3_A DNA polymerase III subu 97.6 4.9E-05 1.7E-09 81.1 6.5 115 122-236 15-160 (373)
178 3rw6_A Nuclear RNA export fact 97.6 1.8E-05 6.2E-10 78.9 2.8 60 469-528 168-232 (267)
179 3d8b_A Fidgetin-like protein 1 97.6 0.00064 2.2E-08 71.6 14.5 88 121-208 82-187 (357)
180 3rw6_A Nuclear RNA export fact 97.6 8.4E-05 2.9E-09 74.0 6.9 80 491-571 167-258 (267)
181 4gt6_A Cell surface protein; l 97.6 0.0064 2.2E-07 65.0 22.0 143 425-572 66-213 (394)
182 3eie_A Vacuolar protein sortin 97.5 0.00031 1.1E-08 73.0 10.6 89 121-209 16-122 (322)
183 1io0_A Tropomodulin; LRR prote 97.5 3.5E-05 1.2E-09 73.0 3.0 118 487-612 29-164 (185)
184 3pvs_A Replication-associated 97.5 0.00042 1.4E-08 75.0 11.7 89 121-209 24-118 (447)
185 1sxj_E Activator 1 40 kDa subu 97.5 0.00028 9.5E-09 74.5 10.2 46 122-167 13-59 (354)
186 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.0012 4.2E-08 68.3 14.8 88 121-209 10-117 (322)
187 3n70_A Transport activator; si 97.5 3.8E-05 1.3E-09 69.4 2.5 105 124-233 2-114 (145)
188 1sxj_D Activator 1 41 kDa subu 97.5 0.00018 6E-09 76.0 7.9 48 121-168 35-82 (353)
189 3syl_A Protein CBBX; photosynt 97.4 0.00016 5.5E-09 74.7 5.9 46 124-169 32-92 (309)
190 3vfd_A Spastin; ATPase, microt 97.3 0.0019 6.4E-08 69.0 13.5 89 121-209 113-219 (389)
191 3ec2_A DNA replication protein 97.3 0.00016 5.5E-09 68.0 4.4 40 130-169 21-63 (180)
192 2qp9_X Vacuolar protein sortin 97.3 0.0018 6.3E-08 67.9 12.8 88 121-209 49-155 (355)
193 3u61_B DNA polymerase accessor 97.2 0.00041 1.4E-08 72.2 7.2 114 121-236 24-147 (324)
194 3te6_A Regulatory protein SIR3 97.2 0.00059 2E-08 69.7 8.1 45 125-169 22-70 (318)
195 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00084 2.9E-08 67.3 8.8 88 122-209 5-110 (262)
196 3b9p_A CG5977-PA, isoform A; A 97.2 0.0012 4E-08 67.7 9.9 89 121-209 19-125 (297)
197 2zan_A Vacuolar protein sortin 97.1 0.0042 1.4E-07 67.4 13.8 88 121-209 132-239 (444)
198 3pxg_A Negative regulator of g 97.1 0.0013 4.3E-08 72.0 9.3 108 122-233 179-299 (468)
199 1sxj_C Activator 1 40 kDa subu 97.1 0.0017 5.8E-08 67.9 9.9 113 122-235 24-150 (340)
200 3co5_A Putative two-component 97.0 0.00019 6.6E-09 64.5 1.7 104 124-234 5-115 (143)
201 2r62_A Cell division protease 97.0 0.00086 2.9E-08 67.5 6.4 26 145-170 45-70 (268)
202 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0033 1.1E-07 73.5 11.9 89 121-209 184-290 (758)
203 3cf0_A Transitional endoplasmi 96.9 0.0012 4.1E-08 67.7 7.1 86 122-208 14-119 (301)
204 2z4s_A Chromosomal replication 96.8 0.0013 4.5E-08 71.2 6.7 113 122-235 104-237 (440)
205 3pfi_A Holliday junction ATP-d 96.8 0.0021 7.2E-08 67.2 8.2 84 121-209 27-118 (338)
206 4b4t_J 26S protease regulatory 96.8 0.0037 1.3E-07 65.6 9.3 87 122-208 147-252 (405)
207 1sxj_A Activator 1 95 kDa subu 96.7 0.0019 6.4E-08 71.7 7.4 49 121-169 37-102 (516)
208 4fcw_A Chaperone protein CLPB; 96.7 0.0019 6.6E-08 66.5 7.1 45 124-168 18-71 (311)
209 3pxi_A Negative regulator of g 96.7 0.0034 1.2E-07 73.3 9.4 109 121-234 178-300 (758)
210 4h09_A Hypothetical leucine ri 96.7 0.076 2.6E-06 56.1 19.2 102 639-754 238-340 (379)
211 1qvr_A CLPB protein; coiled co 96.6 0.0027 9.1E-08 75.2 8.1 90 120-209 167-275 (854)
212 4b4t_M 26S protease regulatory 96.6 0.004 1.4E-07 66.3 8.6 88 121-208 179-285 (434)
213 4b4t_L 26S protease subunit RP 96.6 0.0056 1.9E-07 65.3 9.7 87 122-208 180-285 (437)
214 3uk6_A RUVB-like 2; hexameric 96.6 0.0039 1.3E-07 66.0 8.6 48 122-169 43-95 (368)
215 1lv7_A FTSH; alpha/beta domain 96.6 0.0041 1.4E-07 62.0 8.1 86 122-208 11-115 (257)
216 4b4t_H 26S protease regulatory 96.6 0.0057 1.9E-07 65.1 9.2 87 122-208 208-313 (467)
217 4b4t_I 26S protease regulatory 96.6 0.0057 1.9E-07 64.4 9.0 88 121-208 180-286 (437)
218 4b4t_K 26S protease regulatory 96.6 0.0059 2E-07 65.0 9.3 88 121-208 170-276 (428)
219 1l8q_A Chromosomal replication 96.5 0.0023 7.8E-08 66.5 5.4 39 131-169 22-62 (324)
220 4h09_A Hypothetical leucine ri 96.4 0.27 9.2E-06 51.8 21.5 88 637-736 259-347 (379)
221 2x8a_A Nuclear valosin-contain 96.4 0.012 4E-07 59.2 10.1 62 147-208 47-114 (274)
222 3pxi_A Negative regulator of g 96.3 0.016 5.5E-07 67.6 11.8 85 123-209 491-591 (758)
223 2ce7_A Cell division protein F 96.3 0.014 4.7E-07 63.2 10.3 87 122-208 15-119 (476)
224 3t15_A Ribulose bisphosphate c 96.3 0.0051 1.7E-07 62.6 6.5 65 143-208 35-110 (293)
225 3fwy_A Light-independent proto 96.2 0.0039 1.3E-07 63.9 5.3 26 142-167 46-71 (314)
226 3hu3_A Transitional endoplasmi 96.2 0.008 2.7E-07 65.6 8.0 86 121-207 202-307 (489)
227 1a5t_A Delta prime, HOLB; zinc 96.2 0.019 6.6E-07 59.5 10.7 108 129-236 8-149 (334)
228 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.011 3.6E-07 59.9 7.8 62 145-208 124-193 (331)
229 3dm5_A SRP54, signal recogniti 96.0 0.08 2.7E-06 56.4 14.1 26 143-168 99-124 (443)
230 1ixz_A ATP-dependent metallopr 96.0 0.018 6.3E-07 57.1 8.8 62 147-208 52-119 (254)
231 1qvr_A CLPB protein; coiled co 95.9 0.024 8.3E-07 66.9 11.1 46 123-168 558-612 (854)
232 2xxa_A Signal recognition part 95.9 0.052 1.8E-06 58.1 12.6 27 142-168 98-124 (433)
233 2gno_A DNA polymerase III, gam 95.9 0.015 5E-07 59.4 7.9 107 129-236 3-123 (305)
234 1iy2_A ATP-dependent metallopr 95.9 0.021 7.1E-07 57.6 9.0 62 147-208 76-143 (278)
235 3cf2_A TER ATPase, transitiona 95.7 0.015 5.1E-07 66.9 7.4 87 122-209 203-309 (806)
236 2c9o_A RUVB-like 1; hexameric 95.6 0.017 5.7E-07 62.9 7.5 88 122-209 36-138 (456)
237 3bos_A Putative DNA replicatio 95.6 0.011 3.8E-07 57.9 5.6 48 122-169 27-77 (242)
238 1rz3_A Hypothetical protein rb 95.6 0.011 3.7E-07 56.4 5.3 41 128-168 3-46 (201)
239 2dhr_A FTSH; AAA+ protein, hex 95.4 0.033 1.1E-06 60.7 8.8 88 121-208 29-134 (499)
240 3c8u_A Fructokinase; YP_612366 95.2 0.019 6.3E-07 55.1 5.5 40 130-169 6-47 (208)
241 3kl4_A SRP54, signal recogniti 95.2 0.054 1.8E-06 57.7 9.4 26 143-168 96-121 (433)
242 3kb2_A SPBC2 prophage-derived 95.1 0.012 4.1E-07 54.3 3.4 25 145-169 2-26 (173)
243 1r6b_X CLPA protein; AAA+, N-t 95.0 0.026 9E-07 65.9 6.9 87 123-209 458-569 (758)
244 2w58_A DNAI, primosome compone 94.9 0.017 5.8E-07 55.0 4.2 39 131-169 37-79 (202)
245 1qhx_A CPT, protein (chloramph 94.9 0.013 4.5E-07 54.5 3.3 24 145-168 4-27 (178)
246 1in4_A RUVB, holliday junction 94.9 0.023 7.7E-07 59.0 5.3 49 121-169 23-76 (334)
247 3e70_C DPA, signal recognition 94.9 0.11 3.7E-06 53.4 10.2 27 142-168 127-153 (328)
248 3lw7_A Adenylate kinase relate 94.9 0.012 4.2E-07 54.4 3.0 20 145-164 2-21 (179)
249 3vaa_A Shikimate kinase, SK; s 94.8 0.015 5.1E-07 55.3 3.4 27 143-169 24-50 (199)
250 1ypw_A Transitional endoplasmi 94.8 0.019 6.6E-07 67.0 4.9 87 122-208 203-308 (806)
251 1zp6_A Hypothetical protein AT 94.8 0.016 5.4E-07 54.6 3.4 24 144-167 9-32 (191)
252 2bjv_A PSP operon transcriptio 94.8 0.018 6.2E-07 57.6 4.0 48 122-169 5-54 (265)
253 3end_A Light-independent proto 94.6 0.029 9.9E-07 57.5 5.3 27 141-167 38-64 (307)
254 2ga8_A Hypothetical 39.9 kDa p 94.5 0.035 1.2E-06 57.0 5.5 41 130-170 6-50 (359)
255 3trf_A Shikimate kinase, SK; a 94.5 0.02 6.7E-07 53.6 3.4 26 144-169 5-30 (185)
256 1kag_A SKI, shikimate kinase I 94.5 0.015 5.2E-07 53.7 2.6 24 145-168 5-28 (173)
257 1ly1_A Polynucleotide kinase; 94.5 0.02 6.9E-07 53.2 3.4 22 145-166 3-24 (181)
258 1odf_A YGR205W, hypothetical 3 94.5 0.037 1.3E-06 55.9 5.6 27 142-168 29-55 (290)
259 1ofh_A ATP-dependent HSL prote 94.5 0.025 8.5E-07 58.0 4.4 47 124-170 16-76 (310)
260 2yvu_A Probable adenylyl-sulfa 94.5 0.026 8.8E-07 52.9 4.2 28 142-169 11-38 (186)
261 2kjq_A DNAA-related protein; s 94.5 0.028 9.6E-07 50.5 4.2 27 143-169 35-61 (149)
262 1kgd_A CASK, peripheral plasma 94.5 0.019 6.6E-07 53.5 3.2 24 145-168 6-29 (180)
263 1zuh_A Shikimate kinase; alpha 94.4 0.021 7.3E-07 52.4 3.4 27 143-169 6-32 (168)
264 3uie_A Adenylyl-sulfate kinase 94.4 0.023 8E-07 54.0 3.7 27 142-168 23-49 (200)
265 1nks_A Adenylate kinase; therm 94.4 0.025 8.4E-07 53.3 3.8 25 145-169 2-26 (194)
266 1j8m_F SRP54, signal recogniti 94.3 0.25 8.7E-06 49.9 11.4 24 144-167 98-121 (297)
267 1knq_A Gluconate kinase; ALFA/ 94.3 0.026 8.9E-07 52.2 3.6 25 144-168 8-32 (175)
268 3t61_A Gluconokinase; PSI-biol 94.3 0.019 6.6E-07 54.7 2.8 26 144-169 18-43 (202)
269 2rhm_A Putative kinase; P-loop 94.2 0.031 1.1E-06 52.6 4.1 25 144-168 5-29 (193)
270 4eun_A Thermoresistant glucoki 94.2 0.025 8.4E-07 53.8 3.4 27 142-168 27-53 (200)
271 2hf9_A Probable hydrogenase ni 94.2 0.036 1.2E-06 53.8 4.6 36 133-168 27-62 (226)
272 3iij_A Coilin-interacting nucl 94.2 0.022 7.4E-07 53.1 2.8 26 144-169 11-36 (180)
273 1xjc_A MOBB protein homolog; s 94.1 0.029 1E-06 51.2 3.5 27 143-169 3-29 (169)
274 2bdt_A BH3686; alpha-beta prot 94.1 0.027 9.3E-07 52.9 3.5 22 145-166 3-24 (189)
275 2jaq_A Deoxyguanosine kinase; 94.1 0.027 9.3E-07 53.6 3.4 25 146-170 2-26 (205)
276 1kht_A Adenylate kinase; phosp 94.1 0.028 9.4E-07 52.9 3.4 25 145-169 4-28 (192)
277 1uf9_A TT1252 protein; P-loop, 94.1 0.032 1.1E-06 53.0 3.9 26 142-167 6-31 (203)
278 2afh_E Nitrogenase iron protei 94.1 0.047 1.6E-06 55.3 5.4 24 144-167 2-25 (289)
279 2if2_A Dephospho-COA kinase; a 94.0 0.028 9.6E-07 53.5 3.4 22 145-166 2-23 (204)
280 2ze6_A Isopentenyl transferase 94.0 0.03 1E-06 55.5 3.7 25 145-169 2-26 (253)
281 1via_A Shikimate kinase; struc 94.0 0.024 8.3E-07 52.5 2.8 25 145-169 5-29 (175)
282 2wsm_A Hydrogenase expression/ 94.0 0.031 1.1E-06 53.9 3.6 37 132-168 18-54 (221)
283 1cp2_A CP2, nitrogenase iron p 93.9 0.049 1.7E-06 54.4 5.2 23 145-167 2-24 (269)
284 4gp7_A Metallophosphoesterase; 93.9 0.026 8.9E-07 52.1 2.8 23 144-166 9-31 (171)
285 1ukz_A Uridylate kinase; trans 93.9 0.038 1.3E-06 52.6 4.0 27 142-168 13-39 (203)
286 1cke_A CK, MSSA, protein (cyti 93.9 0.031 1.1E-06 54.2 3.5 24 145-168 6-29 (227)
287 2qt1_A Nicotinamide riboside k 93.9 0.035 1.2E-06 53.0 3.8 26 143-168 20-45 (207)
288 2c95_A Adenylate kinase 1; tra 93.9 0.036 1.2E-06 52.3 3.8 27 143-169 8-34 (196)
289 2ffh_A Protein (FFH); SRP54, s 93.9 0.46 1.6E-05 50.4 12.6 26 143-168 97-122 (425)
290 3tr0_A Guanylate kinase, GMP k 93.9 0.029 1E-06 53.4 3.2 24 145-168 8-31 (205)
291 1y63_A LMAJ004144AAA protein; 93.9 0.031 1.1E-06 52.2 3.3 25 143-167 9-33 (184)
292 3asz_A Uridine kinase; cytidin 93.8 0.036 1.2E-06 53.1 3.8 27 143-169 5-31 (211)
293 1ye8_A Protein THEP1, hypothet 93.8 0.036 1.2E-06 51.5 3.6 24 146-169 2-25 (178)
294 1uj2_A Uridine-cytidine kinase 93.8 0.034 1.2E-06 55.0 3.7 27 142-168 20-46 (252)
295 2bbw_A Adenylate kinase 4, AK4 93.8 0.034 1.2E-06 54.8 3.6 26 143-168 26-51 (246)
296 2orw_A Thymidine kinase; TMTK, 93.8 0.013 4.5E-07 54.8 0.5 89 145-236 4-114 (184)
297 2iyv_A Shikimate kinase, SK; t 93.8 0.027 9.1E-07 52.7 2.6 24 145-168 3-26 (184)
298 2qor_A Guanylate kinase; phosp 93.8 0.029 9.8E-07 53.5 2.9 26 143-168 11-36 (204)
299 1tev_A UMP-CMP kinase; ploop, 93.7 0.038 1.3E-06 52.0 3.7 25 144-168 3-27 (196)
300 3cm0_A Adenylate kinase; ATP-b 93.7 0.039 1.3E-06 51.6 3.6 24 145-168 5-28 (186)
301 1gvn_B Zeta; postsegregational 93.6 0.056 1.9E-06 54.5 4.9 26 143-168 32-57 (287)
302 2j41_A Guanylate kinase; GMP, 93.6 0.034 1.2E-06 53.0 3.2 25 144-168 6-30 (207)
303 3tau_A Guanylate kinase, GMP k 93.6 0.034 1.2E-06 53.2 3.2 27 143-169 7-33 (208)
304 1sky_E F1-ATPase, F1-ATP synth 93.6 0.12 4E-06 55.3 7.4 25 145-169 152-176 (473)
305 3a00_A Guanylate kinase, GMP k 93.6 0.029 1E-06 52.6 2.6 25 145-169 2-26 (186)
306 2bwj_A Adenylate kinase 5; pho 93.6 0.039 1.3E-06 52.2 3.5 25 145-169 13-37 (199)
307 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.041 1.4E-06 54.7 3.7 25 144-168 4-28 (260)
308 1jjv_A Dephospho-COA kinase; P 93.5 0.035 1.2E-06 52.9 3.1 22 145-166 3-24 (206)
309 1ojl_A Transcriptional regulat 93.5 0.049 1.7E-06 55.6 4.3 45 124-168 3-49 (304)
310 2plr_A DTMP kinase, probable t 93.5 0.044 1.5E-06 52.4 3.7 24 145-168 5-28 (213)
311 2pt5_A Shikimate kinase, SK; a 93.5 0.042 1.4E-06 50.3 3.4 24 146-169 2-25 (168)
312 1e6c_A Shikimate kinase; phosp 93.4 0.035 1.2E-06 51.2 2.8 24 145-168 3-26 (173)
313 1zu4_A FTSY; GTPase, signal re 93.4 0.07 2.4E-06 54.6 5.3 26 143-168 104-129 (320)
314 1qf9_A UMP/CMP kinase, protein 93.4 0.048 1.6E-06 51.2 3.8 25 144-168 6-30 (194)
315 2grj_A Dephospho-COA kinase; T 93.4 0.046 1.6E-06 51.4 3.5 25 143-167 11-35 (192)
316 2cdn_A Adenylate kinase; phosp 93.4 0.044 1.5E-06 52.0 3.5 26 143-168 19-44 (201)
317 2vli_A Antibiotic resistance p 93.4 0.034 1.1E-06 51.9 2.6 25 144-168 5-29 (183)
318 2p5t_B PEZT; postsegregational 93.3 0.059 2E-06 53.3 4.4 27 143-169 31-57 (253)
319 1lvg_A Guanylate kinase, GMP k 93.3 0.035 1.2E-06 52.6 2.6 24 145-168 5-28 (198)
320 2pbr_A DTMP kinase, thymidylat 93.3 0.047 1.6E-06 51.4 3.5 23 146-168 2-24 (195)
321 2r44_A Uncharacterized protein 93.2 0.051 1.7E-06 56.3 3.8 46 123-170 27-72 (331)
322 2f1r_A Molybdopterin-guanine d 93.2 0.04 1.4E-06 50.7 2.7 26 145-170 3-28 (171)
323 4e22_A Cytidylate kinase; P-lo 93.2 0.046 1.6E-06 54.1 3.3 26 143-168 26-51 (252)
324 3ney_A 55 kDa erythrocyte memb 93.1 0.049 1.7E-06 51.2 3.3 27 143-169 18-44 (197)
325 1g8p_A Magnesium-chelatase 38 93.1 0.044 1.5E-06 57.2 3.3 49 121-169 22-70 (350)
326 3aez_A Pantothenate kinase; tr 93.1 0.058 2E-06 55.1 4.1 27 142-168 88-114 (312)
327 1rj9_A FTSY, signal recognitio 93.1 0.056 1.9E-06 54.9 3.9 26 143-168 101-126 (304)
328 3cf2_A TER ATPase, transitiona 93.0 0.1 3.4E-06 60.1 6.3 86 122-208 476-581 (806)
329 3tqc_A Pantothenate kinase; bi 93.0 0.078 2.7E-06 54.1 4.8 27 142-168 90-116 (321)
330 1htw_A HI0065; nucleotide-bind 93.0 0.055 1.9E-06 49.0 3.3 27 142-168 31-57 (158)
331 1aky_A Adenylate kinase; ATP:A 93.0 0.055 1.9E-06 52.2 3.6 26 144-169 4-29 (220)
332 1gtv_A TMK, thymidylate kinase 93.0 0.035 1.2E-06 53.3 2.1 24 146-169 2-25 (214)
333 2j37_W Signal recognition part 93.0 0.17 5.7E-06 55.1 7.7 43 143-209 100-142 (504)
334 3hws_A ATP-dependent CLP prote 93.0 0.088 3E-06 55.3 5.4 46 125-170 17-77 (363)
335 1nn5_A Similar to deoxythymidy 93.0 0.062 2.1E-06 51.5 3.9 26 144-169 9-34 (215)
336 1znw_A Guanylate kinase, GMP k 92.9 0.049 1.7E-06 52.0 3.1 25 144-168 20-44 (207)
337 3tlx_A Adenylate kinase 2; str 92.9 0.1 3.5E-06 51.2 5.5 28 142-169 27-54 (243)
338 2i3b_A HCR-ntpase, human cance 92.9 0.048 1.6E-06 51.1 2.8 24 145-168 2-25 (189)
339 3umf_A Adenylate kinase; rossm 92.9 0.066 2.3E-06 51.3 3.9 29 142-170 27-55 (217)
340 2jeo_A Uridine-cytidine kinase 92.9 0.062 2.1E-06 52.9 3.8 25 143-167 24-48 (245)
341 2wwf_A Thymidilate kinase, put 92.9 0.059 2E-06 51.5 3.6 25 144-168 10-34 (212)
342 1zd8_A GTP:AMP phosphotransfer 92.8 0.058 2E-06 52.4 3.5 25 144-168 7-31 (227)
343 3fb4_A Adenylate kinase; psych 92.8 0.059 2E-06 51.8 3.5 24 146-169 2-25 (216)
344 1zak_A Adenylate kinase; ATP:A 92.8 0.057 2E-06 52.2 3.3 26 144-169 5-30 (222)
345 1ex7_A Guanylate kinase; subst 92.8 0.05 1.7E-06 50.7 2.7 25 145-169 2-26 (186)
346 3nbx_X ATPase RAVA; AAA+ ATPas 92.7 0.076 2.6E-06 57.9 4.5 45 123-169 22-66 (500)
347 1np6_A Molybdopterin-guanine d 92.7 0.068 2.3E-06 49.2 3.5 26 144-169 6-31 (174)
348 1m7g_A Adenylylsulfate kinase; 92.7 0.068 2.3E-06 51.2 3.7 27 143-169 24-50 (211)
349 3nwj_A ATSK2; P loop, shikimat 92.7 0.052 1.8E-06 53.4 2.8 25 145-169 49-73 (250)
350 3jvv_A Twitching mobility prot 92.6 0.071 2.4E-06 55.4 4.0 88 143-234 122-230 (356)
351 2pez_A Bifunctional 3'-phospho 92.6 0.066 2.3E-06 49.7 3.4 25 144-168 5-29 (179)
352 3io3_A DEHA2D07832P; chaperone 92.6 0.1 3.5E-06 54.1 5.2 30 139-168 13-42 (348)
353 1z6g_A Guanylate kinase; struc 92.6 0.049 1.7E-06 52.5 2.6 25 144-168 23-47 (218)
354 2z0h_A DTMP kinase, thymidylat 92.6 0.066 2.3E-06 50.5 3.5 23 146-168 2-24 (197)
355 2px0_A Flagellar biosynthesis 92.6 0.074 2.5E-06 53.8 4.0 26 143-168 104-129 (296)
356 3kjh_A CO dehydrogenase/acetyl 92.6 0.087 3E-06 51.9 4.4 23 146-168 2-24 (254)
357 2f6r_A COA synthase, bifunctio 92.5 0.076 2.6E-06 53.4 3.9 24 143-166 74-97 (281)
358 3dl0_A Adenylate kinase; phosp 92.4 0.064 2.2E-06 51.5 3.2 23 146-168 2-24 (216)
359 3b9q_A Chloroplast SRP recepto 92.4 0.081 2.8E-06 53.7 4.0 26 143-168 99-124 (302)
360 1vht_A Dephospho-COA kinase; s 92.4 0.08 2.7E-06 50.9 3.8 23 144-166 4-26 (218)
361 1um8_A ATP-dependent CLP prote 92.4 0.11 3.9E-06 54.7 5.3 27 144-170 72-98 (376)
362 1s96_A Guanylate kinase, GMP k 92.3 0.069 2.4E-06 51.4 3.2 26 144-169 16-41 (219)
363 4dzz_A Plasmid partitioning pr 92.3 0.1 3.6E-06 49.5 4.5 23 145-167 2-25 (206)
364 3ea0_A ATPase, para family; al 92.3 0.14 4.7E-06 50.2 5.4 26 143-168 3-29 (245)
365 2v54_A DTMP kinase, thymidylat 92.2 0.074 2.5E-06 50.5 3.3 25 144-168 4-28 (204)
366 3ake_A Cytidylate kinase; CMP 92.2 0.078 2.7E-06 50.5 3.5 23 146-168 4-26 (208)
367 3hr8_A Protein RECA; alpha and 92.2 0.25 8.4E-06 51.2 7.4 24 145-168 62-85 (356)
368 3r20_A Cytidylate kinase; stru 92.2 0.082 2.8E-06 51.2 3.5 26 144-169 9-34 (233)
369 3d3q_A TRNA delta(2)-isopenten 92.1 0.081 2.8E-06 54.2 3.5 25 145-169 8-32 (340)
370 2onk_A Molybdate/tungstate ABC 92.1 0.077 2.6E-06 51.8 3.2 26 142-168 23-48 (240)
371 3be4_A Adenylate kinase; malar 92.0 0.089 3E-06 50.6 3.6 25 145-169 6-30 (217)
372 3p32_A Probable GTPase RV1496/ 92.0 0.16 5.6E-06 52.9 5.9 37 132-168 65-103 (355)
373 3iqw_A Tail-anchored protein t 92.0 0.13 4.3E-06 53.0 4.9 29 140-168 12-40 (334)
374 4a74_A DNA repair and recombin 92.0 0.086 2.9E-06 51.1 3.5 22 145-166 26-47 (231)
375 3fkq_A NTRC-like two-domain pr 92.0 0.13 4.5E-06 54.1 5.1 26 142-167 141-167 (373)
376 1vma_A Cell division protein F 91.9 0.1 3.4E-06 53.0 4.0 26 143-168 103-128 (306)
377 1sq5_A Pantothenate kinase; P- 91.9 0.097 3.3E-06 53.4 3.9 27 142-168 78-104 (308)
378 1e4v_A Adenylate kinase; trans 91.9 0.093 3.2E-06 50.3 3.6 23 146-168 2-24 (214)
379 2pcj_A ABC transporter, lipopr 91.9 0.075 2.5E-06 51.4 2.9 24 145-168 31-54 (224)
380 2ehv_A Hypothetical protein PH 91.8 0.079 2.7E-06 52.2 3.1 22 145-166 31-52 (251)
381 2xb4_A Adenylate kinase; ATP-b 91.8 0.094 3.2E-06 50.7 3.4 23 146-168 2-24 (223)
382 3b85_A Phosphate starvation-in 91.7 0.074 2.5E-06 50.7 2.6 23 145-167 23-45 (208)
383 2og2_A Putative signal recogni 91.7 0.11 3.7E-06 53.9 4.0 26 143-168 156-181 (359)
384 3tif_A Uncharacterized ABC tra 91.5 0.089 3E-06 51.3 3.0 26 144-169 31-56 (235)
385 3lnc_A Guanylate kinase, GMP k 91.5 0.063 2.2E-06 52.2 1.9 24 145-168 28-52 (231)
386 1ak2_A Adenylate kinase isoenz 91.5 0.11 3.9E-06 50.5 3.7 27 144-170 16-42 (233)
387 2qgz_A Helicase loader, putati 91.4 0.16 5.5E-06 51.7 4.9 40 130-169 135-177 (308)
388 2cbz_A Multidrug resistance-as 91.4 0.088 3E-06 51.4 2.8 24 145-168 32-55 (237)
389 3sr0_A Adenylate kinase; phosp 91.4 0.11 3.9E-06 49.2 3.5 25 146-170 2-26 (206)
390 3bfv_A CAPA1, CAPB2, membrane 91.3 0.29 9.8E-06 48.8 6.5 27 141-167 79-106 (271)
391 3rfe_A Platelet glycoprotein I 91.2 0.3 1E-05 42.4 5.7 34 472-505 32-66 (130)
392 1g8f_A Sulfate adenylyltransfe 91.2 0.21 7.1E-06 54.3 5.7 48 122-169 371-420 (511)
393 1pgv_A TMD-1, tropomodulin TMD 91.2 0.16 5.5E-06 47.5 4.2 62 468-529 38-111 (197)
394 3gfo_A Cobalt import ATP-bindi 91.2 0.094 3.2E-06 52.3 2.8 25 145-169 35-59 (275)
395 2d2e_A SUFC protein; ABC-ATPas 91.2 0.1 3.5E-06 51.4 3.1 23 145-167 30-52 (250)
396 1oix_A RAS-related protein RAB 91.2 0.12 4.1E-06 48.5 3.4 24 144-167 29-52 (191)
397 3crm_A TRNA delta(2)-isopenten 91.2 0.12 4E-06 52.6 3.5 25 145-169 6-30 (323)
398 1ji0_A ABC transporter; ATP bi 91.1 0.096 3.3E-06 51.2 2.8 25 145-169 33-57 (240)
399 1yrb_A ATP(GTP)binding protein 91.1 0.13 4.6E-06 50.9 3.9 24 143-166 13-36 (262)
400 1b0u_A Histidine permease; ABC 91.1 0.097 3.3E-06 52.0 2.8 26 144-169 32-57 (262)
401 2olj_A Amino acid ABC transpor 91.1 0.096 3.3E-06 51.9 2.7 25 144-168 50-74 (263)
402 3cio_A ETK, tyrosine-protein k 91.1 0.31 1E-05 49.4 6.6 27 141-167 101-128 (299)
403 1tue_A Replication protein E1; 91.1 0.098 3.3E-06 49.0 2.6 39 132-170 45-84 (212)
404 1sgw_A Putative ABC transporte 91.1 0.083 2.8E-06 50.5 2.2 24 145-168 36-59 (214)
405 1mv5_A LMRA, multidrug resista 91.0 0.11 3.7E-06 51.0 3.0 25 144-168 28-52 (243)
406 2pze_A Cystic fibrosis transme 91.0 0.1 3.4E-06 50.7 2.7 24 145-168 35-58 (229)
407 1g5t_A COB(I)alamin adenosyltr 91.0 0.17 5.8E-06 47.1 4.2 50 187-236 110-164 (196)
408 1a7j_A Phosphoribulokinase; tr 91.0 0.083 2.8E-06 53.4 2.1 26 143-168 4-29 (290)
409 3rfe_A Platelet glycoprotein I 90.9 0.34 1.2E-05 42.0 5.8 33 517-549 32-65 (130)
410 1g6h_A High-affinity branched- 90.9 0.1 3.6E-06 51.6 2.8 24 145-168 34-57 (257)
411 2yhs_A FTSY, cell division pro 90.9 0.14 4.9E-06 55.0 4.0 26 143-168 292-317 (503)
412 2oze_A ORF delta'; para, walke 90.9 0.16 5.5E-06 51.5 4.3 24 144-167 34-60 (298)
413 4g1u_C Hemin import ATP-bindin 90.9 0.1 3.6E-06 51.8 2.8 24 145-168 38-61 (266)
414 2zu0_C Probable ATP-dependent 90.9 0.12 4E-06 51.5 3.1 24 144-167 46-69 (267)
415 1wcv_1 SOJ, segregation protei 90.9 0.15 5.2E-06 50.4 4.0 26 143-168 5-31 (257)
416 1byi_A Dethiobiotin synthase; 90.8 0.23 7.8E-06 47.9 5.1 24 145-168 2-26 (224)
417 2ff7_A Alpha-hemolysin translo 90.8 0.11 3.7E-06 51.1 2.8 25 145-169 36-60 (247)
418 2cvh_A DNA repair and recombin 90.7 0.12 4.1E-06 49.7 3.0 22 145-166 21-42 (220)
419 1vpl_A ABC transporter, ATP-bi 90.7 0.11 3.8E-06 51.2 2.8 25 144-168 41-65 (256)
420 3a8t_A Adenylate isopentenyltr 90.7 0.12 4.2E-06 52.7 3.1 25 145-169 41-65 (339)
421 3pg5_A Uncharacterized protein 90.7 0.14 4.6E-06 53.7 3.6 23 145-167 2-25 (361)
422 3exa_A TRNA delta(2)-isopenten 90.7 0.14 4.7E-06 51.6 3.4 26 144-169 3-28 (322)
423 2dyk_A GTP-binding protein; GT 90.7 0.14 4.9E-06 46.0 3.4 23 145-167 2-24 (161)
424 2ghi_A Transport protein; mult 90.7 0.11 3.8E-06 51.4 2.8 23 145-167 47-69 (260)
425 1q3t_A Cytidylate kinase; nucl 90.6 0.16 5.3E-06 49.6 3.7 26 143-168 15-40 (236)
426 2qi9_C Vitamin B12 import ATP- 90.5 0.12 4.1E-06 50.8 2.8 24 145-168 27-50 (249)
427 2ixe_A Antigen peptide transpo 90.5 0.12 4E-06 51.7 2.8 26 144-169 45-70 (271)
428 1ltq_A Polynucleotide kinase; 90.5 0.14 4.8E-06 52.0 3.4 23 145-167 3-25 (301)
429 1ls1_A Signal recognition part 90.5 0.17 5.7E-06 51.2 3.9 26 143-168 97-122 (295)
430 2nq2_C Hypothetical ABC transp 90.4 0.12 4.1E-06 50.9 2.7 24 145-168 32-55 (253)
431 3zvl_A Bifunctional polynucleo 90.4 0.14 4.8E-06 54.7 3.4 63 142-207 256-318 (416)
432 2yz2_A Putative ABC transporte 90.4 0.12 4.2E-06 51.3 2.8 24 145-168 34-57 (266)
433 2wji_A Ferrous iron transport 90.4 0.14 4.7E-06 46.7 2.9 22 145-166 4-25 (165)
434 2eyu_A Twitching motility prot 90.3 0.17 5.8E-06 50.1 3.7 26 143-168 24-49 (261)
435 3cr8_A Sulfate adenylyltranfer 90.3 0.31 1.1E-05 53.7 6.1 45 125-169 348-394 (552)
436 2w0m_A SSO2452; RECA, SSPF, un 90.3 0.14 4.8E-06 49.6 3.1 24 145-168 24-47 (235)
437 2ihy_A ABC transporter, ATP-bi 90.2 0.13 4.4E-06 51.5 2.8 25 145-169 48-72 (279)
438 3m6a_A ATP-dependent protease 90.2 0.24 8.3E-06 54.9 5.3 46 125-170 83-134 (543)
439 3sop_A Neuronal-specific septi 90.2 0.16 5.3E-06 50.7 3.4 24 146-169 4-27 (270)
440 3k1j_A LON protease, ATP-depen 90.2 0.18 6.2E-06 56.8 4.3 46 122-169 40-85 (604)
441 3ez2_A Plasmid partition prote 90.2 0.38 1.3E-05 51.1 6.6 38 130-167 87-132 (398)
442 4eaq_A DTMP kinase, thymidylat 90.2 0.18 6.1E-06 48.9 3.7 27 143-169 25-51 (229)
443 2e87_A Hypothetical protein PH 90.2 2.7 9.4E-05 43.5 13.1 26 142-167 165-190 (357)
444 3la6_A Tyrosine-protein kinase 90.2 0.43 1.5E-05 47.9 6.6 28 141-168 89-117 (286)
445 2f9l_A RAB11B, member RAS onco 90.2 0.16 5.3E-06 48.0 3.2 24 144-167 5-28 (199)
446 2v9p_A Replication protein E1; 90.1 0.15 5E-06 51.6 3.1 26 143-168 125-150 (305)
447 3zq6_A Putative arsenical pump 90.1 0.27 9.3E-06 50.5 5.2 23 145-167 15-37 (324)
448 1ypw_A Transitional endoplasmi 90.1 0.079 2.7E-06 61.8 1.2 86 122-208 476-581 (806)
449 2v3c_C SRP54, signal recogniti 90.0 0.13 4.3E-06 55.1 2.7 26 143-168 98-123 (432)
450 1u94_A RECA protein, recombina 90.0 0.39 1.3E-05 49.9 6.3 24 145-168 64-87 (356)
451 2woj_A ATPase GET3; tail-ancho 90.0 0.28 9.6E-06 51.0 5.2 26 143-168 17-42 (354)
452 2vp4_A Deoxynucleoside kinase; 89.9 0.13 4.4E-06 50.0 2.4 25 143-167 19-43 (230)
453 2ce2_X GTPase HRAS; signaling 89.9 0.16 5.6E-06 45.7 3.1 22 146-167 5-26 (166)
454 4akg_A Glutathione S-transfera 89.8 0.78 2.7E-05 59.9 10.1 24 145-168 1268-1291(2695)
455 3foz_A TRNA delta(2)-isopenten 89.8 0.19 6.5E-06 50.5 3.5 27 143-169 9-35 (316)
456 1g41_A Heat shock protein HSLU 89.8 0.18 6.2E-06 53.7 3.6 46 125-170 17-76 (444)
457 3ug7_A Arsenical pump-driving 89.7 0.29 9.8E-06 50.9 5.1 24 144-167 26-49 (349)
458 1nlf_A Regulatory protein REPA 89.7 0.16 5.6E-06 50.9 3.1 22 145-166 31-52 (279)
459 1n0w_A DNA repair protein RAD5 89.7 0.16 5.5E-06 49.6 3.0 23 145-167 25-47 (243)
460 2zej_A Dardarin, leucine-rich 89.7 0.15 5.2E-06 47.3 2.7 22 146-167 4-25 (184)
461 1cr0_A DNA primase/helicase; R 89.6 0.17 5.8E-06 51.3 3.2 25 144-168 35-59 (296)
462 1nij_A Hypothetical protein YJ 89.6 0.17 5.7E-06 51.9 3.1 25 143-167 3-27 (318)
463 2wjg_A FEOB, ferrous iron tran 89.6 0.18 6.1E-06 46.9 3.1 23 145-167 8-30 (188)
464 2ocp_A DGK, deoxyguanosine kin 89.5 0.22 7.6E-06 48.7 3.9 25 144-168 2-26 (241)
465 2ged_A SR-beta, signal recogni 89.5 0.35 1.2E-05 45.1 5.1 25 143-167 47-71 (193)
466 2xj4_A MIPZ; replication, cell 89.4 0.27 9.1E-06 49.5 4.5 23 145-167 5-28 (286)
467 1svm_A Large T antigen; AAA+ f 89.4 0.18 6.2E-06 52.7 3.2 28 142-169 167-194 (377)
468 2pjz_A Hypothetical protein ST 89.4 0.17 5.7E-06 50.2 2.8 23 145-167 31-53 (263)
469 1z2a_A RAS-related protein RAB 89.4 0.19 6.4E-06 45.6 3.0 23 145-167 6-28 (168)
470 3con_A GTPase NRAS; structural 89.3 0.18 6.2E-06 47.0 2.9 23 145-167 22-44 (190)
471 3nh6_A ATP-binding cassette SU 89.3 0.15 5.1E-06 51.7 2.4 26 144-169 80-105 (306)
472 1g3q_A MIND ATPase, cell divis 89.2 0.35 1.2E-05 47.0 5.1 23 145-167 3-26 (237)
473 2bbs_A Cystic fibrosis transme 89.1 0.18 6.3E-06 50.6 2.9 25 144-168 64-88 (290)
474 1f6b_A SAR1; gtpases, N-termin 89.0 0.33 1.1E-05 45.6 4.6 32 135-166 15-47 (198)
475 3eph_A TRNA isopentenyltransfe 89.0 0.24 8.3E-06 51.7 3.8 25 145-169 3-27 (409)
476 2qmh_A HPR kinase/phosphorylas 88.8 0.23 7.8E-06 46.3 3.1 23 145-167 35-57 (205)
477 2gj8_A MNME, tRNA modification 88.8 0.23 8E-06 45.5 3.2 23 145-167 5-27 (172)
478 1pgv_A TMD-1, tropomodulin TMD 88.8 0.33 1.1E-05 45.3 4.3 82 444-526 40-136 (197)
479 3gmt_A Adenylate kinase; ssgci 88.8 0.25 8.5E-06 47.5 3.4 25 145-169 9-33 (230)
480 3kta_A Chromosome segregation 88.8 0.24 8.1E-06 45.9 3.3 23 145-167 27-49 (182)
481 2woo_A ATPase GET3; tail-ancho 88.8 0.37 1.3E-05 49.5 5.1 27 142-168 17-43 (329)
482 1u8z_A RAS-related protein RAL 88.7 0.21 7.3E-06 45.1 2.9 23 145-167 5-27 (168)
483 1fzq_A ADP-ribosylation factor 88.7 0.35 1.2E-05 44.7 4.4 26 142-167 14-39 (181)
484 3t1o_A Gliding protein MGLA; G 88.7 0.21 7.3E-06 46.7 3.0 24 145-168 15-38 (198)
485 1svi_A GTP-binding protein YSX 88.7 0.26 8.8E-06 46.1 3.5 26 142-167 21-46 (195)
486 1m7b_A RND3/RHOE small GTP-bin 88.6 0.23 7.7E-06 46.1 3.1 23 145-167 8-30 (184)
487 1c1y_A RAS-related protein RAP 88.5 0.23 7.9E-06 44.9 3.0 22 146-167 5-26 (167)
488 1moz_A ARL1, ADP-ribosylation 88.5 0.29 1E-05 45.1 3.8 32 135-166 8-40 (183)
489 2nzj_A GTP-binding protein REM 88.4 0.21 7.2E-06 45.6 2.7 24 144-167 4-27 (175)
490 3tui_C Methionine import ATP-b 88.4 0.23 7.8E-06 51.4 3.1 26 144-169 54-79 (366)
491 1tq4_A IIGP1, interferon-induc 88.4 0.28 9.7E-06 51.9 3.9 26 143-168 68-93 (413)
492 3q72_A GTP-binding protein RAD 88.4 0.23 7.8E-06 44.9 2.9 21 146-166 4-24 (166)
493 2lkc_A Translation initiation 88.4 0.28 9.7E-06 44.9 3.5 26 142-167 6-31 (178)
494 1z08_A RAS-related protein RAB 88.3 0.23 8E-06 45.0 2.9 23 145-167 7-29 (170)
495 2erx_A GTP-binding protein DI- 88.2 0.24 8E-06 45.1 2.8 22 145-166 4-25 (172)
496 1z0j_A RAB-22, RAS-related pro 88.2 0.24 8.2E-06 44.9 2.9 23 145-167 7-29 (170)
497 1ek0_A Protein (GTP-binding pr 88.1 0.25 8.4E-06 44.8 2.9 22 146-167 5-26 (170)
498 1nrj_B SR-beta, signal recogni 88.1 0.28 9.6E-06 46.9 3.4 26 142-167 10-35 (218)
499 1kao_A RAP2A; GTP-binding prot 88.1 0.26 8.8E-06 44.5 3.0 23 145-167 4-26 (167)
500 2p67_A LAO/AO transport system 88.0 0.56 1.9E-05 48.5 5.8 28 141-168 53-80 (341)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.7e-38 Score=353.16 Aligned_cols=254 Identities=15% Similarity=0.151 Sum_probs=186.8
Q ss_pred cccHHHHHHHHHHhCC---CCceEEEEEecCCChHHHHHHHHHh----hhhh-ce------ecccc--------------
Q 043214 126 ESRMSTLNDVLNALNN---PNVNMIGVYGMAGVGKTKLVKEAPR----LAKK-IS------FLMRS-------------- 177 (793)
Q Consensus 126 ~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~----~~~~-fq------~~~~~-------------- 177 (793)
+||+.++++|.++|.. .+++||+|||||||||||||+++|+ ..+. |+ ++...
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 5999999999999973 3689999999999999999999997 2222 52 11100
Q ss_pred -------------ccCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecCCCC-------
Q 043214 178 -------------CLQSESRRARRLCERLKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARNPDI------- 237 (793)
Q Consensus 178 -------------~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~------- 237 (793)
...+.......+++.|.++|||||||||||+..++ .+. ..+||+||||||++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 00112334677888888634999999999998765 221 1279999999998651
Q ss_pred ---------------------CCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHH-HcCCCCCCC
Q 043214 238 ---------------------SGDYAENEDLQSIAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQE-LRRPSGRSF 295 (793)
Q Consensus 238 ---------------------~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~-l~~~~~~~~ 295 (793)
+......+++++++++|+++|+|+||||+++|+.|+.++ .+|...+.. +....
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~---- 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG---- 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC----
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc----
Confidence 111122367888999999999999999999999998764 233333332 21111
Q ss_pred CCCchhhhhhHHHHhhcCCchhhHHHHH-----------HhccccccccccHHHHHHHHhhc--cCCCCc---ccHHHHH
Q 043214 296 TGVPAEAYSTIELSYNHLEGEELKSTFL-----------LCSLMVHIQSATIQYLLSYGMGL--GLFGGI---DRIEEAW 359 (793)
Q Consensus 296 ~~~~~~i~~~l~~sy~~L~~~~lk~cfl-----------~~s~fp~~~~~~~~~Li~~w~ae--g~i~~~---~~~e~~~ 359 (793)
...+.+++.+||++||.+ +|.||+ |||+||+++.++ +++|+|+ ||+... .+.++++
T Consensus 360 ---~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 360 ---LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp ---SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred ---HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 356788999999999998 999999 999999999998 8899999 999742 2344443
Q ss_pred HHHHHHHHHHHHccccccCC--CCcceehhHHHHHHHHHHHhccc
Q 043214 360 NRVYMLVNKLKTSCLLLDGH--TSEEFSMHDVVRDVAISIAFRDQ 402 (793)
Q Consensus 360 ~~~~~~~~~L~~~sll~~~~--~~~~~~mhdlv~~l~~~~~~~~~ 402 (793)
+ ++++|+++||++... ...+|+|||++|++|++++.+++
T Consensus 432 ~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 D----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp H----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred H----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 3 799999999998653 34689999999999998887664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=8.5e-31 Score=328.94 Aligned_cols=260 Identities=20% Similarity=0.274 Sum_probs=199.0
Q ss_pred CcccccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhhh----ce-----ec--c------------
Q 043214 121 CYEAFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----IS-----FL--M------------ 175 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq-----~~--~------------ 175 (793)
+...|+||++++++|.++|. ++++++|+|+||||+||||||+++|++.+. |. +. .
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 34569999999999999985 467899999999999999999999987432 31 00 0
Q ss_pred -------c-----cccCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecCCCCCCC--
Q 043214 176 -------R-----SCLQSESRRARRLCERLKK-EKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARNPDISGD-- 240 (793)
Q Consensus 176 -------~-----~~~~~~~~~~~~l~~~l~~-~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~~~~-- 240 (793)
. ............++..+.+ +|||||||||||+..+|+.+ ++|||||||||++.....
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 0 0012234455556666654 24999999999998877765 579999999999963210
Q ss_pred -------------------------CCCChhhHHHHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHHHcCCCCCCC
Q 043214 241 -------------------------YAENEDLQSIAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQELRRPSGRSF 295 (793)
Q Consensus 241 -------------------------~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~l~~~~~~~~ 295 (793)
....+.+.+.+++|+++|+|+||||+++|+.|+.+. ..|...++.+.......+
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~ 353 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRI 353 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCS
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhc
Confidence 011233446789999999999999999999999775 479999988865443221
Q ss_pred ----CCCchhhhhhHHHHhhcCCchhhHHHHHHhccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHH
Q 043214 296 ----TGVPAEAYSTIELSYNHLEGEELKSTFLLCSLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKT 371 (793)
Q Consensus 296 ----~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~ 371 (793)
....+.+..++.+||+.||++ .|.||+|||+||+++.|+.+.++.+|.+++ + ...+++++|++
T Consensus 354 ~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~----~~~~~l~~L~~ 420 (1249)
T 3sfz_A 354 RKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------E----EVEDILQEFVN 420 (1249)
T ss_dssp SCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------H----HHHHHHHHHHh
Confidence 111356899999999999998 899999999999999999999999997653 2 23457999999
Q ss_pred ccccccCC--CCcceehhHHHHHHHHHHHhcc
Q 043214 372 SCLLLDGH--TSEEFSMHDVVRDVAISIAFRD 401 (793)
Q Consensus 372 ~sll~~~~--~~~~~~mhdlv~~l~~~~~~~~ 401 (793)
+||++... ...+|+||+++|++++..+.++
T Consensus 421 ~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 421 KSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99998543 2336999999999999886654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.1e-30 Score=297.49 Aligned_cols=237 Identities=19% Similarity=0.178 Sum_probs=177.5
Q ss_pred ccccHHHHHHHHHHhCC-CCceEEEEEecCCChHHHHHHHHHhhhhh---ce-------eccc-----------------
Q 043214 125 FESRMSTLNDVLNALNN-PNVNMIGVYGMAGVGKTKLVKEAPRLAKK---IS-------FLMR----------------- 176 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---fq-------~~~~----------------- 176 (793)
.+||+.++++|.++|.. ++.++|+|+||||+||||||+++|++.+. |+ ++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999874 56899999999999999999999986422 42 0000
Q ss_pred ---cccC---------ChHHHHHHHHHHHh--cCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecCCCCCC---
Q 043214 177 ---SCLQ---------SESRRARRLCERLK--KEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARNPDISG--- 239 (793)
Q Consensus 177 ---~~~~---------~~~~~~~~l~~~l~--~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~~~--- 239 (793)
.... +.......+++.+. .+||+||||||||+..+|+.+. +|||||||||++....
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 0000 01223445555551 3589999999999988888762 6999999999887210
Q ss_pred -------C------CCCChhhHHH-H--------HHHHHHhCCCchHHHHHHHHHccC--ChHHHHHHHHHHcCCCCCCC
Q 043214 240 -------D------YAENEDLQSI-A--------KDVAKACGCLPIAIVTIARALRNK--SVFEWKNALQELRRPSGRSF 295 (793)
Q Consensus 240 -------~------~~~~~~~~~~-~--------~~i~~~c~GlPLai~~~g~~l~~~--~~~~w~~~l~~l~~~~~~~~ 295 (793)
. .-...+-.++ . ....+.|+|+||||+++|+.|+.+ +.++|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~------------ 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV------------ 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC------------
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC------------
Confidence 0 0011111111 0 112345999999999999999977 67888753
Q ss_pred CCCchhhhhhHHHHhhcCCchhh-HHHHHHhccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHccc
Q 043214 296 TGVPAEAYSTIELSYNHLEGEEL-KSTFLLCSLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKTSCL 374 (793)
Q Consensus 296 ~~~~~~i~~~l~~sy~~L~~~~l-k~cfl~~s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~~sl 374 (793)
....+..++.+||+.||++ . |.||+|||+||+++.|+.+.++.+|+++|. ++ ...++++|+++||
T Consensus 351 --~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L~eLvdRSL 416 (1221)
T 1vt4_I 351 --NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVVNKLHKYSL 416 (1221)
T ss_dssp --SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHHHHHHTSSS
T ss_pred --ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH----HHHHHHHHHhhCC
Confidence 1567999999999999998 7 999999999999999999999999999871 12 3458999999999
Q ss_pred cccCCCCcceehhHHHHHHH
Q 043214 375 LLDGHTSEEFSMHDVVRDVA 394 (793)
Q Consensus 375 l~~~~~~~~~~mhdlv~~l~ 394 (793)
++..+...+|+|||++++++
T Consensus 417 Lq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 417 VEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSBCSSSSEEBCCCHHHHHH
T ss_pred EEEeCCCCEEEehHHHHHHh
Confidence 98765667899999998865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=274.68 Aligned_cols=256 Identities=20% Similarity=0.274 Sum_probs=191.6
Q ss_pred CcccccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh---h-ce-------ecc------------
Q 043214 121 CYEAFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK---K-IS-------FLM------------ 175 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~-fq-------~~~------------ 175 (793)
....|+||+.++++|.+++. .++.++|+|+||||+||||||+++|++.. . |+ +..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 34579999999999999997 45689999999999999999999998642 2 31 000
Q ss_pred ------------ccccCChHHHHHHHHHHHhcC-CeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecCCCCCCC--
Q 043214 176 ------------RSCLQSESRRARRLCERLKKE-KKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARNPDISGD-- 240 (793)
Q Consensus 176 ------------~~~~~~~~~~~~~l~~~l~~~-kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~~~~~-- 240 (793)
.....+.......+.+.+.+. +++||||||||+..+++.+ ++||+||||||+......
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 001122334455666666542 6899999999987665543 568999999998761110
Q ss_pred -C------------------------CCChhhHHHHHHHHHHhCCCchHHHHHHHHHccCChHHHHHHHHHHcCCCCCCC
Q 043214 241 -Y------------------------AENEDLQSIAKDVAKACGCLPIAIVTIARALRNKSVFEWKNALQELRRPSGRSF 295 (793)
Q Consensus 241 -~------------------------~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~w~~~l~~l~~~~~~~~ 295 (793)
. .......+.+++|+++|+|+||||+.+|+.++... ..|...++.+.......+
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~ 353 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRI 353 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCS
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHh
Confidence 0 01112245688999999999999999999998763 479988888765432211
Q ss_pred ----CCCchhhhhhHHHHhhcCCchhhHHHHHHhccccccccccHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHH
Q 043214 296 ----TGVPAEAYSTIELSYNHLEGEELKSTFLLCSLMVHIQSATIQYLLSYGMGLGLFGGIDRIEEAWNRVYMLVNKLKT 371 (793)
Q Consensus 296 ----~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~~~~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~L~~ 371 (793)
......+..++..||+.||++ .|.||++||+||+++.|+.+.+...|.+++ ++ ...++++|++
T Consensus 354 ~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~----~~~~l~~L~~ 420 (591)
T 1z6t_A 354 RKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE----VEDILQEFVN 420 (591)
T ss_dssp SCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH----HHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------HH----HHHHHHHHHh
Confidence 122457899999999999998 899999999999999999999999996542 22 3457899999
Q ss_pred ccccccC--CCCcceehhHHHHHHHHHH
Q 043214 372 SCLLLDG--HTSEEFSMHDVVRDVAISI 397 (793)
Q Consensus 372 ~sll~~~--~~~~~~~mhdlv~~l~~~~ 397 (793)
+|+++.. +....|.||+++++++...
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999743 2345799999999999876
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6e-25 Score=235.19 Aligned_cols=305 Identities=17% Similarity=0.196 Sum_probs=225.6
Q ss_pred hhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 419 KEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
....++++++++.++.+..++....+++|+.|+++++.+. .++. +..+++|++|++++|.+..+| .+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~--~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT--DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccc--cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 4567788888888888877777667888888888887665 5555 678888888888888877765 4778888888
Q ss_pred EEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 499 LCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 499 L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
|++++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++|... .++. ++.+++|++|++++|.+..
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCC
T ss_pred EECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCcccc
Confidence 888888877755578888888888888844433344778888888888887653 3443 6778888888888776532
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchh
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD 658 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~ 658 (793)
. ..+..+++|+.|+++++.+...+. ...+++|+.|+++++....++.
T Consensus 192 ~-------------~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 192 I-------------SPLASLTSLHYFTAYVNQITDITP--------------------VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp C-------------GGGGGCTTCCEEECCSSCCCCCGG--------------------GGGCTTCCEEECCSSCCCCCGG
T ss_pred c-------------ccccCCCccceeecccCCCCCCch--------------------hhcCCcCCEEEccCCccCCCcc
Confidence 1 236677788888888777665543 2346778888888887777776
Q ss_pred hHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccc
Q 043214 659 DVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICH 738 (793)
Q Consensus 659 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 738 (793)
...+++|+.|++++|... .+ ..+ ..+++|+.|++++|. +..+ .....+++|+.|++++| .+....
T Consensus 239 --~~~l~~L~~L~l~~n~l~-~~-~~~--~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~L~~n-~l~~~~- 303 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQIS-DI-NAV--KDLTKLKMLNVGSNQ-ISDI------SVLNNLSQLNSLFLNNN-QLGNED- 303 (347)
T ss_dssp --GTTCTTCCEEECCSSCCC-CC-GGG--TTCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSS-CCCGGG-
T ss_pred --hhcCCCCCEEECCCCccC-CC-hhH--hcCCCcCEEEccCCc-cCCC------hhhcCCCCCCEEECcCC-cCCCcC-
Confidence 345799999999998653 33 234 789999999999984 3332 13467899999999995 455443
Q ss_pred cccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 739 GKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 739 ~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
+...+.+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 304 -~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 304 -MEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp -HHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred -hhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 2334578999999999995 888766 5679999999999985
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.8e-25 Score=262.29 Aligned_cols=309 Identities=12% Similarity=0.152 Sum_probs=132.4
Q ss_pred CCCccEEEccccCccccccChhhhcCCCcceEEEecCCc-CCC--CChhhhccc-------CCcEEEcCCcccCC-Cc--
Q 043214 444 CPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMH-LPS--LPSSLCLLS-------NLQTLCLDYGVFGD-VS-- 510 (793)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~~--lp~~i~~l~-------~L~~L~L~~~~~~~-~~-- 510 (793)
+++|+.|.+++|.+.. .+|.. |.++++|++|++++|. +.. +|..++.+. +|++|++++|.+.. |.
T Consensus 490 L~~L~~L~Ls~N~l~~-~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMT-QLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTTCC-SCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred CCCCCEEECcCCCCCc-cChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 4445555554444332 33322 2444555555555544 432 444444433 45555555544444 33
Q ss_pred ccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCC-cceeeccccccceeecccccccCc
Q 043214 511 IIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSR-LEELYMGYTFVEWEIEGLNNVRSK 589 (793)
Q Consensus 511 ~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~ 589 (793)
.++++++|++|++++|.+..+| .++.+++|++|++++|... .+|.. ++.+++ |++|++++|.+. .+|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp-------- 635 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLK-YIP-------- 635 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCC-SCC--------
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHH-HhhccccCCEEECcCCCCC-cCc--------
Confidence 3444555555555554444444 4444455555555444433 44443 444444 555555444433 221
Q ss_pred ccHHHhcCC--CCCcEEEEEeccCCccCccc-------ccccccEEEEEecCccCc----ccccCCceEEEeecCCcccc
Q 043214 590 ASLHELKQL--SYLTNLEIQIQDANVLPKGL-------LSKKLKRYKIFIGDEWNW----SDQLQNSRILKLKLNNSTWL 656 (793)
Q Consensus 590 ~~l~~l~~l--~~L~~L~i~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~ 656 (793)
..+..+ ++|+.|++++|.+...++.+ ..++|+.|.++.+..... ...+++|+.|+++++....+
T Consensus 636 ---~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 636 ---NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp ---SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred ---hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 111222 22445555544442221111 112444444443332111 11334455555555444444
Q ss_pred hhhHHHhh-------cCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccc
Q 043214 657 KDDVFMQM-------KGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSN 729 (793)
Q Consensus 657 p~~~~~~l-------~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 729 (793)
|.++.... ++|+.|+|++|... .+|..+....+++|+.|+|++|... .+|. ....+++|+.|+|++
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~-----~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPT-----QPLNSSQLKAFGIRH 785 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS-SCCC-----GGGGCTTCCEEECCC
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC-ccch-----hhhcCCCCCEEECCC
Confidence 44433211 14555555554332 3443331114555555555554321 1211 123455555555544
Q ss_pred cc-----cc-ccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 730 LI-----NL-EKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 730 ~~-----~l-~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
++ ++ ..+ +...+.+++|+.|+|++| ++..+|.. -.++|+.|+|++|+
T Consensus 786 N~~ls~N~l~~~i---p~~l~~L~~L~~L~Ls~N-~L~~Ip~~----l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 786 QRDAEGNRILRQW---PTGITTCPSLIQLQIGSN-DIRKVDEK----LTPQLYILDIADNP 838 (876)
T ss_dssp CBCTTCCBCCCCC---CTTGGGCSSCCEEECCSS-CCCBCCSC----CCSSSCEEECCSCT
T ss_pred CCCcccccccccC---hHHHhcCCCCCEEECCCC-CCCccCHh----hcCCCCEEECCCCC
Confidence 21 11 112 223345566666666665 34555442 13566666666654
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=3e-25 Score=256.30 Aligned_cols=315 Identities=14% Similarity=0.167 Sum_probs=200.6
Q ss_pred CCCCccEEEccccCccccc-----------------cChhhhc--CCCcceEEEecCCcCC-CCChhhhcccCCcEEEcC
Q 043214 443 ECPQLKLLHMATEDLSVQQ-----------------IPNNFFI--GMTELRVLDFVAMHLP-SLPSSLCLLSNLQTLCLD 502 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~-----------------~~~~~~~--~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~ 502 (793)
.+++|+.|+++++.+.. . +|..+ . ++++|++|++++|.+. .+|..++++++|++|+++
T Consensus 204 ~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred cccCCCEEECcCCcccc-ccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 56777777777776552 2 56554 4 6777777777777655 567777777777777777
Q ss_pred Ccc-cCC---CcccccC------CcccEEEecCCCCcccCh--hcccCCCCCEEecCCCcCccccChhhhcCCCCcceee
Q 043214 503 YGV-FGD---VSIIGEL------KTLEILSFQGSNIEEFPR--EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELY 570 (793)
Q Consensus 503 ~~~-~~~---~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~ 570 (793)
+|. +.. |..++.+ ++|++|++++|+++.+|. .++++++|++|++++|...+.+| . ++.+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 776 552 5555555 777777777777777776 67777777777777776655666 3 67777777777
Q ss_pred ccccccceeecccccccCcccHHHhcCCCC-CcEEEEEeccCCccCccccc---ccccEEEEEecCccC----ccc----
Q 043214 571 MGYTFVEWEIEGLNNVRSKASLHELKQLSY-LTNLEIQIQDANVLPKGLLS---KKLKRYKIFIGDEWN----WSD---- 638 (793)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~-L~~L~i~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~---- 638 (793)
+++|.+. .++ ..+..+++ |+.|++++|.+..+|..+.. ++|+.|.++.+.... .+.
T Consensus 360 L~~N~l~-~lp-----------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 360 LAYNQIT-EIP-----------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp CCSSEEE-ECC-----------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCccc-ccc-----------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 7777655 332 35778888 99999999988888876543 367888887655322 222
Q ss_pred ---ccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCcccccccccc------CCCCCCCceEeecCCCcceecc
Q 043214 639 ---QLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDR------EGFPKLKHPQIQNNPYFLYVID 709 (793)
Q Consensus 639 ---~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~l~~~~~ 709 (793)
.+++|+.|+++++....+|..++..+++|+.|+|++|... .+|..... .++++|+.|++++|.. ..++.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC-CccCh
Confidence 4568888888888888888887776788888888887654 44433211 1122777777777643 23332
Q ss_pred ccCccCCccCcccceeecccccccccccccccccccCCCCCeeeecc------CCCCCcccchHHhcCCCCCcEEEeccc
Q 043214 710 SVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKS------CDKLSFIFSFSVARSLPQLQTIEVIAC 783 (793)
Q Consensus 710 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~------C~~L~~l~~~~~~~~l~~L~~L~i~~C 783 (793)
.. ....+++|+.|++++ +.++.+ +.....+++|+.|++++ |.-...+|. .+.++++|++|++++|
T Consensus 506 ~~---~~~~l~~L~~L~Ls~-N~l~~i---p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 506 DF---RATTLPYLVGIDLSY-NSFSKF---PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSN 576 (636)
T ss_dssp GG---STTTCTTCCEEECCS-SCCSSC---CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSS
T ss_pred hh---hhccCCCcCEEECCC-CCCCCc---ChhhhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCC
Confidence 21 112566777777776 455554 33344566666666643 221223332 3345666666666655
Q ss_pred c
Q 043214 784 K 784 (793)
Q Consensus 784 ~ 784 (793)
.
T Consensus 577 ~ 577 (636)
T 4eco_A 577 D 577 (636)
T ss_dssp C
T ss_pred c
Confidence 3
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=5.4e-25 Score=258.32 Aligned_cols=323 Identities=13% Similarity=0.169 Sum_probs=195.3
Q ss_pred cCCCCCccEEEccccCcccc----------------ccChhh-hcCCCcceEEEecCCcCC-CCChhhhcccCCcEEEcC
Q 043214 441 GLECPQLKLLHMATEDLSVQ----------------QIPNNF-FIGMTELRVLDFVAMHLP-SLPSSLCLLSNLQTLCLD 502 (793)
Q Consensus 441 ~~~~~~L~~L~l~~~~~~~~----------------~~~~~~-~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~ 502 (793)
...+++|+.|+++++.+... .+|+.+ |.++++|++|++++|.+. .+|..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 33566666666666655520 166654 336777777777777654 667777777777777777
Q ss_pred Ccc-cCC---CcccccCC-------cccEEEecCCCCcccCh--hcccCCCCCEEecCCCcCccccChhhhcCCCCccee
Q 043214 503 YGV-FGD---VSIIGELK-------TLEILSFQGSNIEEFPR--EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEEL 569 (793)
Q Consensus 503 ~~~-~~~---~~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L 569 (793)
+|. +.. |..++++. +|++|++++|++..+|. .++++++|++|++++|... .+| . ++.+++|++|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEE
Confidence 776 542 44444444 77777777777777777 6777777777777776654 666 3 6777777777
Q ss_pred eccccccceeecccccccCcccHHHhcCCCC-CcEEEEEeccCCccCccccc---ccccEEEEEecCccCccc-------
Q 043214 570 YMGYTFVEWEIEGLNNVRSKASLHELKQLSY-LTNLEIQIQDANVLPKGLLS---KKLKRYKIFIGDEWNWSD------- 638 (793)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~-L~~L~i~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~------- 638 (793)
++++|.+. .++ ..+..+++ |+.|++++|.+..+|..+.. ++|+.|.++.+......+
T Consensus 601 ~Ls~N~l~-~lp-----------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 601 KLDYNQIE-EIP-----------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp ECCSSCCS-CCC-----------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred ECcCCccc-cch-----------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 77777665 333 24666666 77777777777666655432 236666666554321111
Q ss_pred --ccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCcccccccccc------CCCCCCCceEeecCCCcceeccc
Q 043214 639 --QLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDR------EGFPKLKHPQIQNNPYFLYVIDS 710 (793)
Q Consensus 639 --~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~l~~~~~~ 710 (793)
..++|+.|+++++....+|.+++..+++|+.|+|++|... .+|..... .++++|+.|+|++|. +..++..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchHH
Confidence 2336777777777777777776655677777777776543 44433211 122377777777763 3333321
Q ss_pred cCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCC-----CC-CcccchHHhcCCCCCcEEEecccc
Q 043214 711 VKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCD-----KL-SFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 711 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~-----~L-~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
. ....+++|+.|+|++ +.++.+ +.....+++|+.|++++|+ ++ ..+|. .+.++++|+.|++++|.
T Consensus 747 l---~~~~l~~L~~L~Ls~-N~L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 747 F---RATTLPYLSNMDVSY-NCFSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND 817 (876)
T ss_dssp G---STTTCTTCCEEECCS-SCCSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC
T ss_pred h---hhccCCCcCEEEeCC-CCCCcc---chhhhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCC
Confidence 1 112567777777776 455555 3344567777777776532 22 23332 34567777777777764
Q ss_pred chhhhh
Q 043214 785 NMKEIF 790 (793)
Q Consensus 785 ~l~~i~ 790 (793)
- .+|+
T Consensus 818 L-~~Ip 822 (876)
T 4ecn_A 818 I-RKVD 822 (876)
T ss_dssp C-CBCC
T ss_pred C-CccC
Confidence 3 4444
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.7e-24 Score=239.52 Aligned_cols=320 Identities=18% Similarity=0.206 Sum_probs=195.1
Q ss_pred hhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEE
Q 043214 420 EALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTL 499 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 499 (793)
....++++|++++|.+..++....+++|+.|.+.++.+. .+++ +..+++|++|++++|.+..+|. +..+++|++|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccc--cChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 344555555555555555544445555555555555443 3333 4555555555555555555543 5555555555
Q ss_pred EcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccccee
Q 043214 500 CLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWE 579 (793)
Q Consensus 500 ~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 579 (793)
++++|.+..++.++.+++|++|+++ +.+..++. +.++++|++|++++|.. ..++. +..+++|++|++++|.+...
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-SDISV--LAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECCSSCCCCC
T ss_pred ECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-CCChh--hccCCCCCEEEecCCccccc
Confidence 5555555554445555555555554 23333332 55666666666666553 33332 55666666666666654321
Q ss_pred ecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccC--cccccCCceEEEeecCCcccch
Q 043214 580 IEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWN--WSDQLQNSRILKLKLNNSTWLK 657 (793)
Q Consensus 580 ~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~L~~L~l~~~~~~~~p 657 (793)
..++.+++|+.|++++|.+..++....+++|+.|.+..+.... ....+++|+.|+++++....+|
T Consensus 215 -------------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 215 -------------TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp -------------GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred -------------ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccc
Confidence 1256677777888777777666554455777777776654322 2456677888888877776666
Q ss_pred hhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccc
Q 043214 658 DDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKIC 737 (793)
Q Consensus 658 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 737 (793)
. ...+++|+.|++++|.... .+. + ..+++|+.|++++|... .++ ....+++|+.|++++| .++.++
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~-~~~-~--~~l~~L~~L~L~~n~l~-~~~------~~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLED-ISP-I--SNLKNLTYLTLYFNNIS-DIS------PVSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSC-CGG-G--GGCTTCSEEECCSSCCS-CCG------GGGGCTTCCEEECCSS-CCCCCG
T ss_pred c--ccCCCccCeEEcCCCcccC-chh-h--cCCCCCCEEECcCCcCC-Cch------hhccCccCCEeECCCC-ccCCch
Confidence 5 3346788888888776433 322 3 67788888888887532 221 2457788888888884 566552
Q ss_pred ccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 738 HGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 738 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
....+++|+.|++++| ++.+.++ +..+++|+.|++++|+
T Consensus 348 ----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 348 ----SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp ----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred ----hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 3457888999999888 5666655 5678899999988874
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.3e-24 Score=251.17 Aligned_cols=347 Identities=19% Similarity=0.176 Sum_probs=225.7
Q ss_pred hhhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCC
Q 043214 420 EALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNL 496 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L 496 (793)
..+.+++++++++|.+..++. +..+++|+.|+++++.+. .+++..|.++++|++|++++|.+..+ |..++++++|
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 455889999999999988776 348999999999999877 67666779999999999999999876 7889999999
Q ss_pred cEEEcCCcccCC--CcccccCCcccEEEecCCCCc--ccChhcccCCCCCEEecCCCcCccccChhhhcCCC--------
Q 043214 497 QTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIE--EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLS-------- 564 (793)
Q Consensus 497 ~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~-------- 564 (793)
++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|......|.. ++.++
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccce
Confidence 999999999877 467999999999999999887 57999999999999999998764433322 33333
Q ss_pred -------------------Ccceeeccccccceee-c----cc-------------------------------------
Q 043214 565 -------------------RLEELYMGYTFVEWEI-E----GL------------------------------------- 583 (793)
Q Consensus 565 -------------------~L~~L~l~~~~~~~~~-~----~~------------------------------------- 583 (793)
+|++|++++|.+.+.. + .+
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 3444444444321000 0 00
Q ss_pred ----cccc-C---------------------cccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccC--
Q 043214 584 ----NNVR-S---------------------KASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWN-- 635 (793)
Q Consensus 584 ----~~~~-~---------------------~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 635 (793)
.... . ...+..+..+++|+.|++++|.+..+|.. .+++|+.|.+..+....
T Consensus 266 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp EEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC
T ss_pred eeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch
Confidence 0000 0 00011234445666666666666666643 55667777766553211
Q ss_pred cccccCCceEEEeecCCcccc---hhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeec------------
Q 043214 636 WSDQLQNSRILKLKLNNSTWL---KDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQN------------ 700 (793)
Q Consensus 636 ~~~~~~~L~~L~l~~~~~~~~---p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~------------ 700 (793)
....+++|+.|+++++..... |..+ ..+++|+.|++++|.. ...+..+ ..+++|+.|++++
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l-~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGA-IIMSANF--MGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHH-HCCSCCCEEECCSCSE-EEECCCC--TTCTTCCEEECTTSEEESTTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhh-ccCCcccEeECCCCcc-ccchhhc--cCCCCCCeeECCCCccCCccChhhh
Confidence 233556677777766655444 3333 3356666666666542 2233333 4445555555444
Q ss_pred -------------CCCcceeccccCccCCccCcccceeeccccccccc-ccccccccccCCCCCeeeeccCCCCCcccch
Q 043214 701 -------------NPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEK-ICHGKLKAESFCKLTTLKVKSCDKLSFIFSF 766 (793)
Q Consensus 701 -------------~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~ 766 (793)
|......+ .....+++|+.|+++++ .+.. .. +...+.+++|+.|++++| +++.+++.
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 491 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFD-----GIFLGLTSLNTLKMAGN-SFKDNTL--SNVFANTTNLTFLDLSKC-QLEQISWG 491 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCT-----TTTTTCTTCCEEECTTC-EEGGGEE--CSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred hccccCCEEECcCCCCCccch-----hhhcCCCCCCEEECCCC-cCCCcch--HHhhccCCCCCEEECCCC-cCCccChh
Confidence 43211111 12345677777777774 3433 11 334567888889999888 67766553
Q ss_pred HHhcCCCCCcEEEecccc
Q 043214 767 SVARSLPQLQTIEVIACK 784 (793)
Q Consensus 767 ~~~~~l~~L~~L~i~~C~ 784 (793)
.+..+++|++|++++|.
T Consensus 492 -~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 492 -VFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp -TTTTCTTCCEEECCSSC
T ss_pred -hhcccccCCEEECCCCc
Confidence 45778899999998883
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.1e-24 Score=238.09 Aligned_cols=320 Identities=19% Similarity=0.194 Sum_probs=262.9
Q ss_pred hhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEE
Q 043214 420 EALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTL 499 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 499 (793)
....+++.+++.++.+..++....+++|+.|+++++.+. .+++ +..+++|++|++++|.+..++. +..+++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT--DITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC--Cchh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 446789999999999988888778999999999999876 5665 6899999999999999998887 9999999999
Q ss_pred EcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccccee
Q 043214 500 CLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWE 579 (793)
Q Consensus 500 ~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 579 (793)
++++|.+...+.+.++++|++|++++|.+..+|. ++.+++|++|++++ .. ..+++ ++.+++|++|++++|.+..
T Consensus 118 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~-~~~~~--~~~l~~L~~L~l~~n~l~~- 191 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QV-TDLKP--LANLTTLERLDISSNKVSD- 191 (466)
T ss_dssp ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SC-CCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-cc-cCchh--hccCCCCCEEECcCCcCCC-
Confidence 9999999886569999999999999999888874 89999999999964 33 34444 7899999999999987642
Q ss_pred ecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCcc--CcccccCCceEEEeecCCcccch
Q 043214 580 IEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEW--NWSDQLQNSRILKLKLNNSTWLK 657 (793)
Q Consensus 580 ~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~L~~L~l~~~~~~~~p 657 (793)
+..+..+++|+.|++++|.+...+..-.+++|+.|.+..+..- .....+++|+.|+++++.....+
T Consensus 192 ------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 192 ------------ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp ------------CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred ------------ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch
Confidence 1357889999999999999887766556789999999876532 24667889999999998887777
Q ss_pred hhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccc
Q 043214 658 DDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKIC 737 (793)
Q Consensus 658 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 737 (793)
+ ...+++|+.|++++|.... .+. + ..+++|+.|++++|.. +.++ ....+++|+.|++++| .+..+.
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~-~~~-~--~~l~~L~~L~L~~n~l-~~~~------~~~~l~~L~~L~L~~n-~l~~~~ 325 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISN-ISP-L--AGLTALTNLELNENQL-EDIS------PISNLKNLTYLTLYFN-NISDIS 325 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCC-CGG-G--TTCTTCSEEECCSSCC-SCCG------GGGGCTTCSEEECCSS-CCSCCG
T ss_pred h--hhcCCCCCEEECCCCccCc-ccc-c--cCCCccCeEEcCCCcc-cCch------hhcCCCCCCEEECcCC-cCCCch
Confidence 6 3457999999999986543 333 4 7899999999999853 2221 2568899999999995 566653
Q ss_pred ccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 738 HGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 738 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
..+.+++|+.|++++| +++.++ .+.++++|+.|++++|.
T Consensus 326 ----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 326 ----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC
T ss_pred ----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc
Confidence 2568999999999999 678774 46789999999999885
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2.9e-24 Score=248.13 Aligned_cols=278 Identities=16% Similarity=0.117 Sum_probs=194.8
Q ss_pred hhhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCC-CChhhhcccCC
Q 043214 420 EALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPS-LPSSLCLLSNL 496 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~i~~l~~L 496 (793)
..+..++++++++|.+..+++ +..+++|++|+++++.+. .+++..|.++++|++|++++|.+.. .|..++.+++|
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 456789999999999988754 348999999999999876 5666667999999999999999885 47789999999
Q ss_pred cEEEcCCcccCC--CcccccCCcccEEEecCCCCcccC-hhcccCCCCCEEecCCCcCccccChhhhcCCCCcc--eeec
Q 043214 497 QTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFP-REIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLE--ELYM 571 (793)
Q Consensus 497 ~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~--~L~l 571 (793)
++|++++|.+.. +..++++++|++|++++|.+..++ +.+..+++|++|++++|... .+++..++.+++|+ +|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEec
Confidence 999999999888 578899999999999999988762 33445999999999998765 44444488899998 8888
Q ss_pred cccccceeecccccc----------------------------------------------------------------c
Q 043214 572 GYTFVEWEIEGLNNV----------------------------------------------------------------R 587 (793)
Q Consensus 572 ~~~~~~~~~~~~~~~----------------------------------------------------------------~ 587 (793)
.+|.+....++.-.. .
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 888766543321100 0
Q ss_pred CcccHHHhcCCCCCcEEEEEeccCCccCccc-ccccccEEEEEecCccC----cccccCCceEEEeecCCcc-cchhhHH
Q 043214 588 SKASLHELKQLSYLTNLEIQIQDANVLPKGL-LSKKLKRYKIFIGDEWN----WSDQLQNSRILKLKLNNST-WLKDDVF 661 (793)
Q Consensus 588 ~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~-~~p~~~~ 661 (793)
.......++.+++|+.|++++|.+..+|..+ .+++|+.|.+..+.... ....+++|+.|+++++... .+|....
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 0011122566778888888888887777665 34677777776554221 3445666777777665443 3444333
Q ss_pred HhhcCCcEEEeccccCcccc--ccccccCCCCCCCceEeecCC
Q 043214 662 MQMKGIEELYLDEMRGVKNI--VYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 662 ~~l~~L~~L~L~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 702 (793)
..+++|+.|++++|...... +..+ ..+++|+.|++++|.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNE 387 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCS
T ss_pred hccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCc
Confidence 34566666666666543322 2223 556666666666654
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.2e-24 Score=242.05 Aligned_cols=347 Identities=18% Similarity=0.158 Sum_probs=259.9
Q ss_pred hhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCc
Q 043214 421 ALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQ 497 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~ 497 (793)
.+.++++|++++|.+..+++ ...+++|++|+++++.... .+++..|.++++|++|++++|.+..+ |..++++++|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC-EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc-eECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 56889999999999977643 3489999999999987754 67777789999999999999999854 78899999999
Q ss_pred EEEcCCcccCC--Ccc--cccCCcccEEEecCCCCccc-Chh-cccCCCCCEEecCCCcCccccChhhhcCC--CCccee
Q 043214 498 TLCLDYGVFGD--VSI--IGELKTLEILSFQGSNIEEF-PRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSL--SRLEEL 569 (793)
Q Consensus 498 ~L~L~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l--~~L~~L 569 (793)
+|++++|.+.. +.. ++.+++|++|++++|.+..+ |.. +.++++|++|++++|......|.. +..+ .+|+.|
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L 185 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLL 185 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhcccccccccc
Confidence 99999999886 444 88999999999999999876 544 789999999999998876655544 5555 689999
Q ss_pred eccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccC-ccc----ccccccEEEEEecCccC---------
Q 043214 570 YMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLP-KGL----LSKKLKRYKIFIGDEWN--------- 635 (793)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~-~~~----~~~~L~~L~l~~~~~~~--------- 635 (793)
++.+|.+....+.. ........+..+++|+.|++++|.+.... ..+ ..++|+.|.+..+....
T Consensus 186 ~l~~n~l~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 186 RLSSITLQDMNEYW---LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp ECTTCBCTTCSTTC---TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred ccccCcccccchhh---ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 99988765432210 00111123456688999999998875422 221 22677888776542111
Q ss_pred ------c-ccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceec
Q 043214 636 ------W-SDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVI 708 (793)
Q Consensus 636 ------~-~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 708 (793)
+ ....++|+.|+++++.....++.....+++|+.|++++|......+..+ ..+++|++|++++|.. ..++
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l-~~~~ 339 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFL-GSID 339 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCC-CEEC
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCcc-CCcC
Confidence 0 1123689999999988877655545567999999999998766556566 7899999999999854 3332
Q ss_pred cccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 709 DSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 709 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
. .....+++|+.|++++ +.++.+. +.....+++|++|++++| +++.+|+. .+..+++|+.|++++++
T Consensus 340 ~----~~~~~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 S----RMFENLDKLEVLDLSY-NHIRALG--DQSFLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp G----GGGTTCTTCCEEECCS-SCCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred h----hHhcCcccCCEEECCC-CcccccC--hhhccccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCC
Confidence 1 1345789999999999 5676663 334567999999999998 78888763 45789999999997653
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=3.3e-24 Score=233.26 Aligned_cols=304 Identities=14% Similarity=0.196 Sum_probs=213.2
Q ss_pred CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCcc
Q 043214 442 LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTL 518 (793)
Q Consensus 442 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L 518 (793)
..+++++.|.+.++.+. .+|..+|..+++|++|++++|.+..+| ..+..+++|++|++++|.+.. +..++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCchh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 35677777777776655 677777777778888888877777554 467777788888888777766 3456777788
Q ss_pred cEEEecCCCCcccChhc-ccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcC
Q 043214 519 EILSFQGSNIEEFPREI-GQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQ 597 (793)
Q Consensus 519 ~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 597 (793)
++|++++|.++.+|..+ .++++|++|++++|.... +++..++.+++|++|++++|.+... .+..
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~ 184 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV--------------DLSL 184 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC--------------CGGG
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc--------------cccc
Confidence 88888877777777663 677788888887776543 4433467777888888777765421 2455
Q ss_pred CCCCcEEEEEeccCCccCcccccccccEEEEEecCccCc-ccccCCceEEEeecCCcccchhhHHHhhcCCcEEEecccc
Q 043214 598 LSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNW-SDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 598 l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 676 (793)
+++|+.|++++|.+..++. .++|+.|.+..+..-.. ...+++|+.|+++++.....+ ++. .+++|+.|++++|.
T Consensus 185 l~~L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~-~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLL-NYPGLVEVDLSYNE 259 (390)
T ss_dssp CTTCSEEECCSSCCSEEEC---CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGG-GCTTCSEEECCSSC
T ss_pred ccccceeecccccccccCC---CCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHc-CCCCccEEECCCCc
Confidence 6777777777776654432 24566666655432211 223568888999888776654 443 46899999999987
Q ss_pred CccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeecc
Q 043214 677 GVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKS 756 (793)
Q Consensus 677 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 756 (793)
.....+..+ ..+++|+.|++++|. ++.++. ....+|+|+.|+++++ .++.++ ...+.+++|+.|++++
T Consensus 260 l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~---~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 260 LEKIMYHPF--VKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSHN-HLLHVE---RNQPQFDRLENLYLDH 327 (390)
T ss_dssp CCEEESGGG--TTCSSCCEEECCSSC-CCEEEC-----SSSCCTTCCEEECCSS-CCCCCG---GGHHHHTTCSEEECCS
T ss_pred CCCcChhHc--cccccCCEEECCCCc-CcccCc-----ccCCCCCCCEEECCCC-cceecC---ccccccCcCCEEECCC
Confidence 665556666 788999999999875 444432 2356889999999984 677663 3456789999999999
Q ss_pred CCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 757 CDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 757 C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
| .++.++ +..+++|+.|++++++
T Consensus 328 N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 328 N-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp S-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred C-ccceeC----chhhccCCEEEcCCCC
Confidence 8 477774 3668999999997753
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=248.57 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=126.4
Q ss_pred hhhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCC
Q 043214 420 EALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNL 496 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L 496 (793)
..+.+++++++++|.+..++. +..+++|+.|+++++.+. .+++..|.++++|++|++++|.+..+| ..++++++|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 345789999999999987764 348999999999998776 677777899999999999999988655 688999999
Q ss_pred cEEEcCCcccCC-C-cccccCCcccEEEecCCCCcc--cChhcccCCCCCEEecCCCcCccccChhhhcCCCCc----ce
Q 043214 497 QTLCLDYGVFGD-V-SIIGELKTLEILSFQGSNIEE--FPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRL----EE 568 (793)
Q Consensus 497 ~~L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L----~~ 568 (793)
++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|.... +++..++.+++| ++
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhh
Confidence 999999999887 3 358999999999999998874 78899999999999999987644 443336666666 67
Q ss_pred eeccccccce
Q 043214 569 LYMGYTFVEW 578 (793)
Q Consensus 569 L~l~~~~~~~ 578 (793)
|++.+|.+..
T Consensus 182 L~l~~n~l~~ 191 (570)
T 2z63_A 182 LDLSLNPMNF 191 (570)
T ss_dssp EECTTCCCCE
T ss_pred cccCCCCcee
Confidence 7777665543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=4.8e-24 Score=243.30 Aligned_cols=349 Identities=18% Similarity=0.171 Sum_probs=228.8
Q ss_pred hccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChh-hhcccCCcE
Q 043214 422 LKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSS-LCLLSNLQT 498 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~ 498 (793)
+..++++++++|.+..+++ +..+++|++|+++++.+. .+++..|..+++|++|++++|.+..+|.. ++++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 4678888888888876643 347888888888888776 56655668888888888888888876654 888888888
Q ss_pred EEcCCcccCC---CcccccCCcccEEEecCCC-CcccC-hhcccCCCCCEEecCCCcCccccChhhhcC-----------
Q 043214 499 LCLDYGVFGD---VSIIGELKTLEILSFQGSN-IEEFP-REIGQLTRLRLLNLAYCNLLKVIPSNVLSS----------- 562 (793)
Q Consensus 499 L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~----------- 562 (793)
|++++|.+.. +..++++++|++|++++|. +..+| ..+..+++|++|++++|......|.. ++.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEeccc
Confidence 8888887764 4678888888888888886 56666 35778888888888877765555544 444
Q ss_pred -------------CCCcceeeccccccceee----cc---cccc---------cCcc----cHHH---------------
Q 043214 563 -------------LSRLEELYMGYTFVEWEI----EG---LNNV---------RSKA----SLHE--------------- 594 (793)
Q Consensus 563 -------------l~~L~~L~l~~~~~~~~~----~~---~~~~---------~~~~----~l~~--------------- 594 (793)
+++|++|++++|.+.... +- .... .... ....
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 455555665555443310 00 0000 0000 0000
Q ss_pred --------------------------------------------hcCCCCCcEEEEEeccCCccCccc--ccccccEEEE
Q 043214 595 --------------------------------------------LKQLSYLTNLEIQIQDANVLPKGL--LSKKLKRYKI 628 (793)
Q Consensus 595 --------------------------------------------l~~l~~L~~L~i~~~~~~~~~~~~--~~~~L~~L~l 628 (793)
.....+|+.|++++|.+..+|..+ .+++|+.|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence 011235566666666666666655 2577888887
Q ss_pred EecCccC-------cccccCCceEEEeecCCcccchh--hHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEee
Q 043214 629 FIGDEWN-------WSDQLQNSRILKLKLNNSTWLKD--DVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQ 699 (793)
Q Consensus 629 ~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~p~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~ 699 (793)
+.+.... +...+++|+.|+++++....+|. .....+++|+.|++++|.. +.+|..+ ..+++|++|+++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~--~~~~~L~~L~Ls 418 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSC--QWPEKMRFLNLS 418 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-CCCCSCC--CCCTTCCEEECT
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-ccCChhh--cccccccEEECC
Confidence 7665322 24566788888888887777664 3345578899999988854 3566655 667888888888
Q ss_pred cCCCcceeccccC-------------ccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccch
Q 043214 700 NNPYFLYVIDSVK-------------HVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSF 766 (793)
Q Consensus 700 ~~~~l~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~ 766 (793)
+|. ++.++.... ......+++|+.|++++ ++++.++. ...+++|+.|++++| +++.+++.
T Consensus 419 ~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~-N~l~~ip~----~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 419 STG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR-NKLKTLPD----ASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp TSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS-SCCSSCCC----GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred CCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCC-CccCcCCC----cccCccCCEEecCCC-ccCCcCHH
Confidence 775 322222110 00113567788888887 46766642 246788888888888 67777653
Q ss_pred HHhcCCCCCcEEEecccc
Q 043214 767 SVARSLPQLQTIEVIACK 784 (793)
Q Consensus 767 ~~~~~l~~L~~L~i~~C~ 784 (793)
.+..+++|+.|++++|+
T Consensus 492 -~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 492 -IFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp -GGGGCTTCCEEECCSSC
T ss_pred -HHhcCcccCEEEecCCC
Confidence 45778888888886665
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.2e-24 Score=257.20 Aligned_cols=335 Identities=18% Similarity=0.156 Sum_probs=181.8
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC-CCChhhhcccCCcEEEc
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP-SLPSSLCLLSNLQTLCL 501 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L 501 (793)
.+++++++++|.+....+...+++|+.|+++++.+.. .+|. +..+++|++|++++|.+. .+|..++.+++|++|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST-GIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCS-CCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCC-CCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 4555666665555444444556666666666665542 3333 456666666666666655 44556666666666666
Q ss_pred CCcccCC-CcccccCCcccEEEecCCCCc-ccChhcccC-CCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 502 DYGVFGD-VSIIGELKTLEILSFQGSNIE-EFPREIGQL-TRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 502 ~~~~~~~-~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
++|.+.. ++.. .+++|++|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++.+++|++|++++|.+.+
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC
Confidence 6665544 2222 5556666666665555 555555443 56666666665555455544 5566666666666655543
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCC-ccCcccc----------------------------cccccEEEEE
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDAN-VLPKGLL----------------------------SKKLKRYKIF 629 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~-~~~~~~~----------------------------~~~L~~L~l~ 629 (793)
.++. ..+..+++|+.|++++|.+. .+|..+. .++|+.|.+.
T Consensus 333 ~ip~----------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 333 ELPM----------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp ECCH----------HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred cCCH----------HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 3331 22555555555555555443 3333321 2334444443
Q ss_pred ecCc----cCcccccCCceEEEeecCCcc-cchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCc
Q 043214 630 IGDE----WNWSDQLQNSRILKLKLNNST-WLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYF 704 (793)
Q Consensus 630 ~~~~----~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 704 (793)
.+.. ...+..+++|+.|+++++... ..|..+. .+++|+.|++++|......|..+ ..+++|+.|++++|...
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLT 479 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCccc
Confidence 3321 112344555566666555443 2333332 24566666666665544555544 55666666666666433
Q ss_pred ceeccccCccCCccCcccceeecccccccc-cccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccc
Q 043214 705 LYVIDSVKHVPRDAFRALESLSLSNLINLE-KICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIAC 783 (793)
Q Consensus 705 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 783 (793)
..++. ....+++|+.|+++++ .+. .+ +...+.+++|+.|++++|.-...+|. .+.++++|+.|++++|
T Consensus 480 ~~~p~-----~l~~l~~L~~L~L~~N-~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 480 GEIPS-----GLSNCTNLNWISLSNN-RLTGEI---PKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SCCCG-----GGGGCTTCCEEECCSS-CCCSCC---CGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSS
T ss_pred CcCCH-----HHhcCCCCCEEEccCC-ccCCcC---ChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCC
Confidence 22221 2345677777777774 343 33 33455678888888888743334433 4567888888888877
Q ss_pred cch
Q 043214 784 KNM 786 (793)
Q Consensus 784 ~~l 786 (793)
+-.
T Consensus 549 ~l~ 551 (768)
T 3rgz_A 549 LFN 551 (768)
T ss_dssp EEE
T ss_pred ccC
Confidence 543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.3e-24 Score=239.50 Aligned_cols=130 Identities=19% Similarity=0.288 Sum_probs=73.2
Q ss_pred ccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEE
Q 043214 423 KRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLC 500 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 500 (793)
.+++++++++|.+..+++ +..+++|++|+++++.+. .+++..|..+++|++|++++|.+..+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC--CcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 556666666666655442 235566666666666554 34334445666666666666666655554 566666666
Q ss_pred cCCcccCC---CcccccCCcccEEEecCCCCcccChhcccCCCC--CEEecCCCcC--ccccChh
Q 043214 501 LDYGVFGD---VSIIGELKTLEILSFQGSNIEEFPREIGQLTRL--RLLNLAYCNL--LKVIPSN 558 (793)
Q Consensus 501 L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~ 558 (793)
+++|.+.. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence 66665543 3456666666666666665554 234555555 6666666554 3444443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.3e-24 Score=250.91 Aligned_cols=332 Identities=14% Similarity=0.180 Sum_probs=191.4
Q ss_pred hhhccCCeEEecCCCccc------------------ccccC---CCCCccEEEccccCccccccChhhhcCCCcceEEEe
Q 043214 420 EALKRCPAISLHNCKIDE------------------LLEGL---ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDF 478 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l 478 (793)
....+++.|++++|.+.. +|... .+++|+.|.+.+|.+.. .+|.. |.++++|++|++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SCCTT-TTTCSSCCEEEC
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cChHH-HhcCCCCCEEEC
Confidence 456678888888888866 66654 47888888888877664 66654 477888888888
Q ss_pred cCCc-CC--CCChhhhcc------cCCcEEEcCCcccCC-Cc--ccccCCcccEEEecCCCCc-ccChhcccCCCCCEEe
Q 043214 479 VAMH-LP--SLPSSLCLL------SNLQTLCLDYGVFGD-VS--IIGELKTLEILSFQGSNIE-EFPREIGQLTRLRLLN 545 (793)
Q Consensus 479 ~~~~-~~--~lp~~i~~l------~~L~~L~L~~~~~~~-~~--~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~ 545 (793)
++|. +. .+|..++.+ ++|++|++++|.+.. |. .++++++|++|++++|.+. .+| .++.+++|++|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 8887 76 377777776 788888888888777 55 6888888888888888887 788 778888888888
Q ss_pred cCCCcCccccChhhhcCCCC-cceeeccccccceeecccccccCcccHHHhcC--CCCCcEEEEEeccCCcc-Cccc---
Q 043214 546 LAYCNLLKVIPSNVLSSLSR-LEELYMGYTFVEWEIEGLNNVRSKASLHELKQ--LSYLTNLEIQIQDANVL-PKGL--- 618 (793)
Q Consensus 546 l~~~~~~~~~p~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~--l~~L~~L~i~~~~~~~~-~~~~--- 618 (793)
+++|... .+|.. ++.+++ |++|++++|.+. .+|. .+.. +++|+.|++++|.+... |..+
T Consensus 360 L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~-----------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 360 LAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLK-YIPN-----------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCSSEEE-ECCTT-SEEECTTCCEEECCSSCCS-SCCS-----------CCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCCccc-cccHh-hhhhcccCcEEEccCCcCc-ccch-----------hhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 8887654 67766 777777 888888887765 3331 1222 22455555555554321 1111
Q ss_pred -----ccccccEEEEEecCccCc----ccccCCceEEEeecCCcccchhhHHHhhc-------CCcEEEeccccCccccc
Q 043214 619 -----LSKKLKRYKIFIGDEWNW----SDQLQNSRILKLKLNNSTWLKDDVFMQMK-------GIEELYLDEMRGVKNIV 682 (793)
Q Consensus 619 -----~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~p~~~~~~l~-------~L~~L~L~~~~~~~~~~ 682 (793)
..++|+.|.++.+..-.. ...+++|+.|+++++....+|......+. +|+.|+|++|... .+|
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 123445555444332111 12244555555555555555544332211 5555555555433 344
Q ss_pred cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccc-----c-cccccccccccccCCCCCeeeecc
Q 043214 683 YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLI-----N-LEKICHGKLKAESFCKLTTLKVKS 756 (793)
Q Consensus 683 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~-l~~~~~~~~~~~~~~~L~~L~l~~ 756 (793)
..+....+++|+.|++++|.... +|. ....+++|+.|+++++. + ...+ +...+.+++|++|++++
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~-----~~~~l~~L~~L~Ls~N~~ls~N~l~~~~---p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPT-----QPLNSSTLKGFGIRNQRDAQGNRTLREW---PEGITLCPSLTQLQIGS 575 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCC-----GGGGCSSCCEEECCSCBCTTCCBCCCCC---CTTGGGCSSCCEEECCS
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cCh-----hhhcCCCCCEEECCCCcccccCcccccC---hHHHhcCCCCCEEECCC
Confidence 43311145555555555553221 221 12244555555553211 1 1122 22333455555555555
Q ss_pred CCCCCcccchHHhcCCCCCcEEEeccc
Q 043214 757 CDKLSFIFSFSVARSLPQLQTIEVIAC 783 (793)
Q Consensus 757 C~~L~~l~~~~~~~~l~~L~~L~i~~C 783 (793)
| +++.+|.. -.++|+.|++++|
T Consensus 576 N-~l~~ip~~----~~~~L~~L~Ls~N 597 (636)
T 4eco_A 576 N-DIRKVNEK----ITPNISVLDIKDN 597 (636)
T ss_dssp S-CCCBCCSC----CCTTCCEEECCSC
T ss_pred C-cCCccCHh----HhCcCCEEECcCC
Confidence 5 33444431 1245555555554
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.1e-24 Score=253.77 Aligned_cols=337 Identities=23% Similarity=0.273 Sum_probs=187.4
Q ss_pred ccCCeEEecCCCcc-cccccC-CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC-CCChhhhccc-CCcE
Q 043214 423 KRCPAISLHNCKID-ELLEGL-ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP-SLPSSLCLLS-NLQT 498 (793)
Q Consensus 423 ~~~~~l~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~-~L~~ 498 (793)
.+++++++++|.+. .+|... .+++|+.|++.++.+.. .+|...+..+++|++|++++|.+. .+|..+..+. +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE-ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC-cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 44555555555553 222222 45556666665555443 455554556666666666666555 5555555555 5666
Q ss_pred EEcCCcccCC--Cccccc--CCcccEEEecCCCCc-ccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccc
Q 043214 499 LCLDYGVFGD--VSIIGE--LKTLEILSFQGSNIE-EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGY 573 (793)
Q Consensus 499 L~L~~~~~~~--~~~i~~--l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 573 (793)
|++++|.+.. |+.++. +++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++.+++|++|++.+
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWL 451 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCC
Confidence 6666665543 444444 556666666666555 55666666666666666666555555554 56666666666666
Q ss_pred cccceeecccccccCcccHHHhcCCCCCcEEEEEeccCC-ccCccc-ccccccEEEEEecCcc----CcccccCCceEEE
Q 043214 574 TFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDAN-VLPKGL-LSKKLKRYKIFIGDEW----NWSDQLQNSRILK 647 (793)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~----~~~~~~~~L~~L~ 647 (793)
|.+.+.++ ..+..+++|+.|++++|.+. .+|..+ .+++|+.|.+..+... .++..+++|+.|+
T Consensus 452 n~l~~~~p-----------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 452 NMLEGEIP-----------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp SCCCSCCC-----------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CcccCcCC-----------HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 65554433 34556666666666666654 334333 2356666666554422 2344556666666
Q ss_pred eecCCcc-cchhhHHHhhcCCcEEEeccccCccccccccc----------------------------------------
Q 043214 648 LKLNNST-WLKDDVFMQMKGIEELYLDEMRGVKNIVYDLD---------------------------------------- 686 (793)
Q Consensus 648 l~~~~~~-~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~---------------------------------------- 686 (793)
++++... .+|..+. .+++|+.|++++|.....+|..+.
T Consensus 521 L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 521 LSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp CCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred CCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 6666554 3444443 356666666666544333322110
Q ss_pred ----------------------------cCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccc-ccc
Q 043214 687 ----------------------------REGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLE-KIC 737 (793)
Q Consensus 687 ----------------------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~ 737 (793)
.+.+++|+.|++++|.....+|. ..+.+++|+.|++++ +.++ .+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-----~l~~l~~L~~L~Ls~-N~l~g~i- 672 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-----EIGSMPYLFILNLGH-NDISGSI- 672 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-----GGGGCTTCCEEECCS-SCCCSCC-
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-----HHhccccCCEEeCcC-CccCCCC-
Confidence 12345566666666653333332 234566777777776 3444 34
Q ss_pred ccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 738 HGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 738 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
+...+.+++|+.|++++| +++...|. .+..+++|+.|++++|.
T Consensus 673 --p~~l~~L~~L~~LdLs~N-~l~g~ip~-~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 673 --PDEVGDLRGLNILDLSSN-KLDGRIPQ-AMSALTMLTEIDLSNNN 715 (768)
T ss_dssp --CGGGGGCTTCCEEECCSS-CCEECCCG-GGGGCCCCSEEECCSSE
T ss_pred --ChHHhCCCCCCEEECCCC-cccCcCCh-HHhCCCCCCEEECcCCc
Confidence 344566777777777777 45533332 34667777777777764
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.7e-24 Score=243.67 Aligned_cols=304 Identities=14% Similarity=0.189 Sum_probs=220.3
Q ss_pred CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCcc
Q 043214 442 LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTL 518 (793)
Q Consensus 442 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L 518 (793)
..+++++.+.+.++.+. .+|+.+|..+++|++|++++|.+..+| ..++.+++|++|+|++|.+.. +..++++++|
T Consensus 48 l~l~~l~~l~l~~~~l~--~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCCCC--CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 35677888888777665 778887888888888888888887554 478888888888888888777 3456888888
Q ss_pred cEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcC
Q 043214 519 EILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQ 597 (793)
Q Consensus 519 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 597 (793)
++|++++|.+..+|.. ++++++|++|++++|......| ..++.+++|++|++++|.+... .++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~--------------~~~~ 190 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV--------------DLSL 190 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBC--------------CGGG
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCc--------------Chhh
Confidence 8888888888888776 4788888888888876654434 3477888888888888766432 2455
Q ss_pred CCCCcEEEEEeccCCccCcccccccccEEEEEecCccCc-ccccCCceEEEeecCCcccchhhHHHhhcCCcEEEecccc
Q 043214 598 LSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNW-SDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 598 l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 676 (793)
+++|+.|++++|.+..++. ..+|+.|.++.+..-.. ...+++|+.|+++++..... .++. .+++|+.|+|++|.
T Consensus 191 l~~L~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~-~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 191 IPSLFHANVSYNLLSTLAI---PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLL-NYPGLVEVDLSYNE 265 (597)
T ss_dssp CTTCSEEECCSSCCSEEEC---CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGG-GCTTCSEEECCSSC
T ss_pred hhhhhhhhcccCccccccC---CchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhc-cCCCCCEEECCCCc
Confidence 6778888888776655432 35677777765542221 22346788899888776664 3443 46899999999987
Q ss_pred CccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeecc
Q 043214 677 GVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKS 756 (793)
Q Consensus 677 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 756 (793)
.....|..+ ..+++|+.|+|++|. +..++. ....+|+|+.|+|++ +.+..++ ...+.+++|+.|++++
T Consensus 266 l~~~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~-----~~~~l~~L~~L~Ls~-N~l~~i~---~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 266 LEKIMYHPF--VKMQRLERLYISNNR-LVALNL-----YGQPIPTLKVLDLSH-NHLLHVE---RNQPQFDRLENLYLDH 333 (597)
T ss_dssp CCEEESGGG--TTCSSCCEEECTTSC-CCEEEC-----SSSCCTTCCEEECCS-SCCCCCG---GGHHHHTTCSEEECCS
T ss_pred cCCCCHHHh--cCccCCCEEECCCCC-CCCCCc-----ccccCCCCcEEECCC-CCCCccC---cccccCCCCCEEECCC
Confidence 766666666 788999999998875 444432 235688999999998 4676663 3456789999999999
Q ss_pred CCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 757 CDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 757 C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
| .+..++ +..+++|+.|++++++
T Consensus 334 N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 334 N-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp S-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred C-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 8 467664 3568899999997754
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.2e-23 Score=243.06 Aligned_cols=152 Identities=19% Similarity=0.256 Sum_probs=133.1
Q ss_pred CCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCC
Q 043214 425 CPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDY 503 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 503 (793)
-+.++.+++.+..+|... .++++.|+++++.+. .+++..|.++++|++|++++|.+..+ |..++++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCCcC--EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 456788888888888765 489999999999887 67776789999999999999999966 66899999999999999
Q ss_pred cccCC--CcccccCCcccEEEecCCCCcccC-hhcccCCCCCEEecCCCcCcc-ccChhhhcCCCCcceeecccccccee
Q 043214 504 GVFGD--VSIIGELKTLEILSFQGSNIEEFP-REIGQLTRLRLLNLAYCNLLK-VIPSNVLSSLSRLEELYMGYTFVEWE 579 (793)
Q Consensus 504 ~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~ 579 (793)
|.+.. |..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 99887 678999999999999999999877 679999999999999998765 56876 89999999999999987654
Q ss_pred e
Q 043214 580 I 580 (793)
Q Consensus 580 ~ 580 (793)
.
T Consensus 169 ~ 169 (606)
T 3vq2_A 169 T 169 (606)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.6e-23 Score=241.92 Aligned_cols=275 Identities=16% Similarity=0.113 Sum_probs=129.1
Q ss_pred hhcccCCcEEEcCCcccCC-CcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhcCCCCcc
Q 043214 490 LCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLE 567 (793)
Q Consensus 490 i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~ 567 (793)
++.+++|++|++++|.+.. |..++.+++|++|++++|.+..+ |..+..+++|++|++++|.....+|...++.+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 3334444444444444433 33344444444444444444332 223444444444444444333333333334444444
Q ss_pred eeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc--ccccccEEEEEecCcc-----Cccccc
Q 043214 568 ELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL--LSKKLKRYKIFIGDEW-----NWSDQL 640 (793)
Q Consensus 568 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~--~~~~L~~L~l~~~~~~-----~~~~~~ 640 (793)
+|++++|.+..... ....+..+++|+.|++++|.+...+... .+++|+.|.+..+... .....+
T Consensus 354 ~L~l~~n~l~~~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 354 ELDLSHDDIETSDC---------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp EEECCSSCCCEEEE---------STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred EEECCCCccccccC---------cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 44444443332210 0124555566666666655554433222 2355666655443311 123445
Q ss_pred CCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCcccc-ccccccCCCCCCCceEeecCCCcceeccccCccCCccC
Q 043214 641 QNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNI-VYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAF 719 (793)
Q Consensus 641 ~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 719 (793)
++|+.|+++++.....++.....+++|++|++++|...... +.......+++|+.|++++|......+. ....+
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l 499 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-----AFTSL 499 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-----TTTTC
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-----hhccc
Confidence 56666666665554443333333566666666666543311 1111114566666666666642221111 23456
Q ss_pred cccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 720 RALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 720 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
++|+.|++++ +.++... +.....+++| .|++++| +++.+++. .+..+++|+.|++++|+
T Consensus 500 ~~L~~L~Ls~-N~l~~~~--~~~l~~l~~L-~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 500 KMMNHVDLSH-NRLTSSS--IEALSHLKGI-YLNLASN-HISIILPS-LLPILSQQRTINLRQNP 558 (606)
T ss_dssp TTCCEEECCS-SCCCGGG--GGGGTTCCSC-EEECCSS-CCCCCCGG-GHHHHHTSSEEECTTCC
T ss_pred cCCCEEECCC-CccCcCC--hhHhCccccc-EEECcCC-cccccCHh-hcccCCCCCEEeCCCCC
Confidence 6677777766 3444432 2233456666 6666666 45555542 33556777777776543
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1e-23 Score=240.64 Aligned_cols=350 Identities=16% Similarity=0.163 Sum_probs=237.0
Q ss_pred EEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCccc
Q 043214 428 ISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVF 506 (793)
Q Consensus 428 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~ 506 (793)
.+.+++.+..+|... .++|+.|+++++.+. .+++..|..+++|++|++++|.+..+| ..++.+++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 455667777888755 489999999999877 565556799999999999999999654 7899999999999999998
Q ss_pred CC-Cc-ccccCCcccEEEecCCCCcc--cChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecc
Q 043214 507 GD-VS-IIGELKTLEILSFQGSNIEE--FPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEG 582 (793)
Q Consensus 507 ~~-~~-~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 582 (793)
.. ++ .++++++|++|++++|.+.. .|..++++++|++|++++|.....+|+..++.+++|++|++.+|.+....+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 88 44 49999999999999999984 5678999999999999999877888866689999999999999988764431
Q ss_pred c-cc-----------ccCcccH-HHhcCCCCCcEEEEEeccCCccC---ccc--ccccccEEE-----------------
Q 043214 583 L-NN-----------VRSKASL-HELKQLSYLTNLEIQIQDANVLP---KGL--LSKKLKRYK----------------- 627 (793)
Q Consensus 583 ~-~~-----------~~~~~~l-~~l~~l~~L~~L~i~~~~~~~~~---~~~--~~~~L~~L~----------------- 627 (793)
. .. ....... ..+..+++|+.|++++|.+..++ ..+ ..++|+.|.
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 0 00 0000011 11245788888988888776542 110 123333333
Q ss_pred -----------EEecCcc------------------------------Cc---------ccccCCceEEEeecCCcccch
Q 043214 628 -----------IFIGDEW------------------------------NW---------SDQLQNSRILKLKLNNSTWLK 657 (793)
Q Consensus 628 -----------l~~~~~~------------------------------~~---------~~~~~~L~~L~l~~~~~~~~p 657 (793)
+..+... .+ ....++|+.|.+.++....+|
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip 326 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence 3222100 00 011246777888887777788
Q ss_pred hhHHHhhcCCcEEEeccccCccccccc-cccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccc
Q 043214 658 DDVFMQMKGIEELYLDEMRGVKNIVYD-LDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKI 736 (793)
Q Consensus 658 ~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 736 (793)
.+++..+++|+.|++++|......+.. ...+.+++|+.|++++|. ++.++.. ......+++|+.|++++ ++++.+
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~~~l~~L~~L~Ls~-N~l~~l 402 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT--GEILLTLKNLTSLDISR-NTFHPM 402 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH--HHHGGGCTTCCEEECTT-CCCCCC
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccc--hhhhhcCCCCCEEECCC-CCCccC
Confidence 887666899999999998766544321 112678888888888875 3222110 01234677888888877 366665
Q ss_pred cccccccccCCCCCeeeeccCCCCCcccchH----------------HhcCCCCCcEEEeccccchhhh
Q 043214 737 CHGKLKAESFCKLTTLKVKSCDKLSFIFSFS----------------VARSLPQLQTIEVIACKNMKEI 789 (793)
Q Consensus 737 ~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~----------------~~~~l~~L~~L~i~~C~~l~~i 789 (793)
+ .....+++|+.|++++| +++.+|... ....+++|++|++++| ++++|
T Consensus 403 p---~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i 466 (549)
T 2z81_A 403 P---DSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL 466 (549)
T ss_dssp C---SCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC
T ss_pred C---hhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC
Confidence 3 23345566666666666 344443210 0124677777777766 34433
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=7.2e-23 Score=229.09 Aligned_cols=308 Identities=18% Similarity=0.118 Sum_probs=208.6
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYG 504 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 504 (793)
+.+..+++.+..+|... .++++.|+++++.+. .+++..|..+++|++|++++|.+..+ |..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccc--eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 35555666666666543 457788888777766 55555567788888888888877754 667778888888888888
Q ss_pred ccCC-C-cccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeec
Q 043214 505 VFGD-V-SIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIE 581 (793)
Q Consensus 505 ~~~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 581 (793)
.+.. + ..+.++++|++|++++|.+..+ |..+..+++|++|++++|......| ..++.+++|++|++.+|.+....
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~- 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIP- 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCC-
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccC-
Confidence 7776 3 3467788888888888877754 4567778888888887776544333 33777888888888777654322
Q ss_pred ccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc--ccccccEEEEEecCccCc----ccccCCceEEEeecCCccc
Q 043214 582 GLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL--LSKKLKRYKIFIGDEWNW----SDQLQNSRILKLKLNNSTW 655 (793)
Q Consensus 582 ~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~ 655 (793)
...+..+++|+.|++.+|.+..++... .+++|+.|.+..+..... .....+|+.|+++++....
T Consensus 169 ----------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 169 ----------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp ----------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred ----------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 245677788888888877776655433 236677777766543221 2223478888888888778
Q ss_pred chhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccc
Q 043214 656 LKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEK 735 (793)
Q Consensus 656 ~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 735 (793)
+|......+++|+.|+|++|......+..+ ..+++|+.|++++|... .++. .....+++|+.|+|++ +.++.
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~----~~~~~l~~L~~L~L~~-N~l~~ 310 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLA-VVEP----YAFRGLNYLRVLNVSG-NQLTT 310 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSC--TTCTTCCEEECCSSCCS-EECT----TTBTTCTTCCEEECCS-SCCSC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhc--cccccCCEEECCCCccc-eECH----HHhcCcccCCEEECCC-CcCce
Confidence 887666667888888888876544334444 67888888888887532 2211 1345678888888887 56776
Q ss_pred ccccccccccCCCCCeeeeccCC
Q 043214 736 ICHGKLKAESFCKLTTLKVKSCD 758 (793)
Q Consensus 736 ~~~~~~~~~~~~~L~~L~l~~C~ 758 (793)
++.. ....+++|+.|++++++
T Consensus 311 ~~~~--~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 311 LEES--VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCGG--GBSCGGGCCEEECCSSC
T ss_pred eCHh--HcCCCcccCEEEccCCC
Confidence 6422 23467888888888875
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=4.2e-23 Score=235.72 Aligned_cols=142 Identities=19% Similarity=0.299 Sum_probs=79.1
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYG 504 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 504 (793)
++++++++.+..+|... .++++.|+++++.+. .+++..|..+++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 55666666665555533 256666666666554 45544456666666666666666543 455666666666666666
Q ss_pred ccCC-CcccccCCcccEEEecCCCCcccC--hhcccCCCCCEEecCCCcCccccChhhhcCCCCc--ceeecccccc
Q 043214 505 VFGD-VSIIGELKTLEILSFQGSNIEEFP--REIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRL--EELYMGYTFV 576 (793)
Q Consensus 505 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L--~~L~l~~~~~ 576 (793)
.+.. |.. .+++|++|++++|.+..+| ..++++++|++|++++|..... . +..+++| ++|++++|.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecccc
Confidence 6555 333 5666666666666665443 4566666666666666544321 1 2333333 5555555544
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=6.8e-23 Score=219.16 Aligned_cols=284 Identities=19% Similarity=0.215 Sum_probs=225.8
Q ss_pred cchhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCC
Q 043214 417 SDKEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNL 496 (793)
Q Consensus 417 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L 496 (793)
+......+++++++++|.+..++....+++|++|++.++.+. .++. +..+++|++|++++|.+..+|. +..+++|
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~--~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT--DISA--LQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCccc--CchH--HcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 445667899999999999988888779999999999999776 5543 6899999999999999998887 8999999
Q ss_pred cEEEcCCcc-cCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccc
Q 043214 497 QTLCLDYGV-FGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTF 575 (793)
Q Consensus 497 ~~L~L~~~~-~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~ 575 (793)
++|++++|. ...++.+..+++|++|++++|.+..++. +..+++|++|++++|.. ..++. +..+++|+.|++.+|.
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG--GGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc--ccCCCccceeecccCC
Confidence 999999995 4447889999999999999999998876 89999999999999876 45555 7899999999999987
Q ss_pred cceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCccc
Q 043214 576 VEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTW 655 (793)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 655 (793)
+... ..+..+++|+.|++++|.+..++.. ..+++|+.|+++++....
T Consensus 211 l~~~-------------~~~~~~~~L~~L~l~~n~l~~~~~~--------------------~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 211 ITDI-------------TPVANMTRLNSLKIGNNKITDLSPL--------------------ANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCCC-------------GGGGGCTTCCEEECCSSCCCCCGGG--------------------TTCTTCCEEECCSSCCCC
T ss_pred CCCC-------------chhhcCCcCCEEEccCCccCCCcch--------------------hcCCCCCEEECCCCccCC
Confidence 6432 2278899999999999988876652 235666777777766665
Q ss_pred chhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccc
Q 043214 656 LKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEK 735 (793)
Q Consensus 656 ~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 735 (793)
++. + ..+++|+.|++++|... ..+ .+ ..+++|+.|++++|......+ .....+++|+.|++++| .++.
T Consensus 258 ~~~-~-~~l~~L~~L~l~~n~l~-~~~-~~--~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n-~l~~ 325 (347)
T 4fmz_A 258 INA-V-KDLTKLKMLNVGSNQIS-DIS-VL--NNLSQLNSLFLNNNQLGNEDM-----EVIGGLTNLTTLFLSQN-HITD 325 (347)
T ss_dssp CGG-G-TTCTTCCEEECCSSCCC-CCG-GG--GGCTTCSEEECCSSCCCGGGH-----HHHHTCTTCSEEECCSS-SCCC
T ss_pred Chh-H-hcCCCcCEEEccCCccC-CCh-hh--cCCCCCCEEECcCCcCCCcCh-----hHhhccccCCEEEccCC-cccc
Confidence 542 2 34689999999988543 333 33 678999999999986432221 12356889999999985 4666
Q ss_pred ccccccccccCCCCCeeeeccCC
Q 043214 736 ICHGKLKAESFCKLTTLKVKSCD 758 (793)
Q Consensus 736 ~~~~~~~~~~~~~L~~L~l~~C~ 758 (793)
++ + ...+++|++|++++|+
T Consensus 326 ~~--~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IR--P--LASLSKMDSADFANQV 344 (347)
T ss_dssp CG--G--GGGCTTCSEESSSCC-
T ss_pred cc--C--hhhhhccceeehhhhc
Confidence 53 2 5679999999999985
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=243.25 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=129.6
Q ss_pred hhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCc
Q 043214 421 ALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQ 497 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~ 497 (793)
.+.++++|++++|.+..++. +..+++|+.|+++++.... .+++..|.++++|++|++++|.+..+ |..++++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 67899999999999977643 3489999999999986543 77677789999999999999999854 88999999999
Q ss_pred EEEcCCcccCC--Ccc--cccCCcccEEEecCCCCccc--ChhcccCCCCCEEecCCCcCccccChhhhcCC--CCccee
Q 043214 498 TLCLDYGVFGD--VSI--IGELKTLEILSFQGSNIEEF--PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSL--SRLEEL 569 (793)
Q Consensus 498 ~L~L~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l--~~L~~L 569 (793)
+|+|++|.+.. |.. ++++++|++|++++|.+..+ |..++++++|++|++++|......|.. ++.+ ++|+.|
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceE
Confidence 99999999876 544 89999999999999998865 356999999999999998876655654 5555 677777
Q ss_pred eccccccce
Q 043214 570 YMGYTFVEW 578 (793)
Q Consensus 570 ~l~~~~~~~ 578 (793)
++..|.+..
T Consensus 180 ~L~~n~l~~ 188 (844)
T 3j0a_A 180 SLAANSLYS 188 (844)
T ss_dssp EECCSBSCC
T ss_pred ECCCCcccc
Confidence 777776544
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=5.3e-23 Score=228.80 Aligned_cols=324 Identities=13% Similarity=0.104 Sum_probs=240.5
Q ss_pred hhhccCCeEEecCCCcc-cccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCC-CChh--hhcc
Q 043214 420 EALKRCPAISLHNCKID-ELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPS-LPSS--LCLL 493 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~-~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~--i~~l 493 (793)
....++++|++++|.+. .++. +..+++|++|+++++.+. .+++..|.++++|++|++++|.+.. .|.. +..+
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL--QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC--EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC--ccChhhccCcccCCEEeCCCCCCCccccCcccccCc
Confidence 45678999999999884 5543 348999999999999876 5555567999999999999999885 4444 8899
Q ss_pred cCCcEEEcCCcccCC--Ccc-cccCCcccEEEecCCCCccc-ChhcccC--CCCCEEecCCCcCccccChhh--------
Q 043214 494 SNLQTLCLDYGVFGD--VSI-IGELKTLEILSFQGSNIEEF-PREIGQL--TRLRLLNLAYCNLLKVIPSNV-------- 559 (793)
Q Consensus 494 ~~L~~L~L~~~~~~~--~~~-i~~l~~L~~L~l~~~~l~~l-p~~i~~L--~~L~~L~l~~~~~~~~~p~~~-------- 559 (793)
++|++|++++|.+.. |.. ++++++|++|++++|.+..+ |..+..+ .+|+.|++++|.... ++...
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc-cchhhcccccccc
Confidence 999999999999887 344 89999999999999998855 5567666 789999999987644 33221
Q ss_pred hcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccC--------------cccccccccE
Q 043214 560 LSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLP--------------KGLLSKKLKR 625 (793)
Q Consensus 560 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~--------------~~~~~~~L~~ 625 (793)
+..+++|++|++++|.+....+. .+......++|+.|+++++...... .....++|+.
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~--------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAK--------RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHH--------HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred ccccceeeeEecCCCcccccchh--------hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 23668999999999987654331 2233344578888888866432110 0112257888
Q ss_pred EEEEecCcc----CcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecC
Q 043214 626 YKIFIGDEW----NWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNN 701 (793)
Q Consensus 626 L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 701 (793)
|.+..+... .+...+++|+.|+++++.....++.....+++|+.|++++|......+..+ ..+++|++|++++|
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYN 357 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG--TTCTTCCEEECCSS
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh--cCcccCCEEECCCC
Confidence 888766532 245678899999999998888765444557999999999997755555666 78999999999998
Q ss_pred CCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCccc
Q 043214 702 PYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIF 764 (793)
Q Consensus 702 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 764 (793)
.. ..++. .....+++|++|++++ +.++.++. .....+++|+.|++++|+---+.|
T Consensus 358 ~l-~~~~~----~~~~~l~~L~~L~L~~-N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 358 HI-RALGD----QSFLGLPNLKELALDT-NQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CC-CEECT----TTTTTCTTCCEEECCS-SCCSCCCT--TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cc-cccCh----hhccccccccEEECCC-CccccCCH--hHhccCCcccEEEccCCCcccCCC
Confidence 64 33311 2345789999999999 67887752 233678999999999986433333
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5.9e-23 Score=223.32 Aligned_cols=303 Identities=19% Similarity=0.231 Sum_probs=246.0
Q ss_pred hhccCCeEEecCCCcccccccC--CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCc
Q 043214 421 ALKRCPAISLHNCKIDELLEGL--ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQ 497 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~ 497 (793)
...+++++++.++.+..+|... .+++|+.|++.++.+. .++...|..+++|++|++++|.+..+| ..++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4578999999999999998853 7999999999999876 677767899999999999999999765 5689999999
Q ss_pred EEEcCCcccCC-Ccc-cccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 498 TLCLDYGVFGD-VSI-IGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 498 ~L~L~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
+|++++|.+.. |+. ++++++|++|++++|.+..++. .+..+++|++|++++|... .++ ++.+++|++|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeecccc
Confidence 99999999988 544 6899999999999999997754 5899999999999998764 344 568899999999988
Q ss_pred ccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCc--cCcccccCCceEEEeecCC
Q 043214 575 FVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDE--WNWSDQLQNSRILKLKLNN 652 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~L~~L~l~~~~ 652 (793)
.+.. +...++|+.|++++|.+..++... .++|+.|.+..+.. ..+...+++|+.|+++++.
T Consensus 197 ~l~~----------------~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 197 LLST----------------LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp CCSE----------------EECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred cccc----------------cCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcccHHHcCCCCccEEECCCCc
Confidence 7642 344568999999999988876654 47899999877653 2356778999999999998
Q ss_pred cccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccc
Q 043214 653 STWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLIN 732 (793)
Q Consensus 653 ~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 732 (793)
....++.....+++|+.|++++|.. +.++... ..+|+|+.|++++|. +..++.. ...+++|+.|++++ +.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~-----~~~l~~L~~L~L~~-N~ 329 (390)
T 3o6n_A 260 LEKIMYHPFVKMQRLERLYISNNRL-VALNLYG--QPIPTLKVLDLSHNH-LLHVERN-----QPQFDRLENLYLDH-NS 329 (390)
T ss_dssp CCEEESGGGTTCSSCCEEECCSSCC-CEEECSS--SCCTTCCEEECCSSC-CCCCGGG-----HHHHTTCSEEECCS-SC
T ss_pred CCCcChhHccccccCCEEECCCCcC-cccCccc--CCCCCCCEEECCCCc-ceecCcc-----ccccCcCCEEECCC-Cc
Confidence 8777554445579999999999865 4455544 679999999999985 4444322 35789999999999 55
Q ss_pred cccccccccccccCCCCCeeeeccCCCCCc
Q 043214 733 LEKICHGKLKAESFCKLTTLKVKSCDKLSF 762 (793)
Q Consensus 733 l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 762 (793)
++.+ ....+++|+.|++++|+ +..
T Consensus 330 i~~~-----~~~~~~~L~~L~l~~N~-~~~ 353 (390)
T 3o6n_A 330 IVTL-----KLSTHHTLKNLTLSHND-WDC 353 (390)
T ss_dssp CCCC-----CCCTTCCCSEEECCSSC-EEH
T ss_pred ccee-----CchhhccCCEEEcCCCC-ccc
Confidence 7665 35679999999999985 444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.6e-22 Score=221.70 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=221.2
Q ss_pred hhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 419 KEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
.....+++++++++|.+..+|....+++|+.|+++++.+. .++ +..+++|++|++++|.+..+| ++.+++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~--~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT--TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCS--CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCC--eEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 4567889999999999988887778999999999999877 454 588999999999999999876 889999999
Q ss_pred EEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 499 LCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 499 L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
|++++|.+..++ ++.+++|++|++++|.++.+| ++.+++|++|++++|...+.++ ++.+++|++|++++|.+..
T Consensus 111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 999999988854 899999999999999999885 7899999999999997777774 6789999999999987643
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCc-ccccCCceEEEeecCCcccch
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNW-SDQLQNSRILKLKLNNSTWLK 657 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~p 657 (793)
. .+..+++|+.|++++|.+..++ ...+++|+.|.++.+..-.. ...+++|+.|+++++....+|
T Consensus 185 l--------------~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 185 L--------------DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp C--------------CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC
T ss_pred e--------------ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC
Confidence 1 1677889999999999887764 22347777777766542221 445677888888877766665
Q ss_pred hhHHHhhcCCcE----------EEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCc---cCCccCcccce
Q 043214 658 DDVFMQMKGIEE----------LYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKH---VPRDAFRALES 724 (793)
Q Consensus 658 ~~~~~~l~~L~~----------L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---~~~~~~~~L~~ 724 (793)
... +++|+. |++++|.....+| .+.+++|+.|++++|..++.++..... .....+++|+.
T Consensus 250 ~~~---l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 250 VST---LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp CTT---CTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred HHH---CCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 322 344444 4444444333332 256777777777777766666532111 13344566666
Q ss_pred eecccccccccccccccccccCCCCCeeeeccCCCCCcc
Q 043214 725 LSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFI 763 (793)
Q Consensus 725 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l 763 (793)
|++++ ++++.+ ..+.+++|+.|+++++ +++++
T Consensus 323 L~L~~-N~l~~l-----~l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 323 LYLNN-TELTEL-----DVSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp EECTT-CCCSCC-----CCTTCTTCSEEECCSS-CCCBC
T ss_pred EECCC-Cccccc-----ccccCCcCcEEECCCC-CCCCc
Confidence 66665 445443 2456777777777766 45544
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2.6e-22 Score=235.05 Aligned_cols=355 Identities=16% Similarity=0.102 Sum_probs=242.9
Q ss_pred hhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCc
Q 043214 421 ALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQ 497 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~ 497 (793)
.+.++++|++++|.+..++. +..+++|++|+++++.+. .+++..|.++++|++|++++|.+..+|. .++++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 45789999999999988776 348899999999998876 6666677999999999999999998886 599999999
Q ss_pred EEEcCCcccCC--CcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhc--CCCCcceeecc
Q 043214 498 TLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLS--SLSRLEELYMG 572 (793)
Q Consensus 498 ~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~--~l~~L~~L~l~ 572 (793)
+|++++|.+.. +..++++++|++|++++|.+... |..++++++|++|++++|.... +++..++ .+++|++|+++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECT
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECC
Confidence 99999999887 36799999999999999988855 5568899999999999987644 4443343 56899999999
Q ss_pred ccccceeecccccc-cC------------cccHH---HhcCCCCCcEEEEEeccCCccCcccc--c--ccccEEEEEecC
Q 043214 573 YTFVEWEIEGLNNV-RS------------KASLH---ELKQLSYLTNLEIQIQDANVLPKGLL--S--KKLKRYKIFIGD 632 (793)
Q Consensus 573 ~~~~~~~~~~~~~~-~~------------~~~l~---~l~~l~~L~~L~i~~~~~~~~~~~~~--~--~~L~~L~l~~~~ 632 (793)
+|.+....++.-.. .. ..... ..-..++|+.|+++++.+...+...+ + ++|+.|.++.+.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 99776544320000 00 00000 00123678888888887765543322 1 348888887654
Q ss_pred cc----CcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCcc-----cccc--ccccCCCCCCCceEeecC
Q 043214 633 EW----NWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVK-----NIVY--DLDREGFPKLKHPQIQNN 701 (793)
Q Consensus 633 ~~----~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~-----~~~~--~~~~~~l~~L~~L~l~~~ 701 (793)
.. ..+..+++|+.|+++++.....++.....+++|+.|++.++.... .+|. ......+++|++|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 22 235667889999998887776655444557899999998764322 1221 011267899999999888
Q ss_pred CCcceeccccCccCCccCcccceeeccccc-cccccccc------------------------ccccccCCCCCeeeecc
Q 043214 702 PYFLYVIDSVKHVPRDAFRALESLSLSNLI-NLEKICHG------------------------KLKAESFCKLTTLKVKS 756 (793)
Q Consensus 702 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~------------------------~~~~~~~~~L~~L~l~~ 756 (793)
.... ++ ......+++|++|+++++. .+..++.. +.....+++|+.|++++
T Consensus 340 ~l~~-~~----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 340 DIPG-IK----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp CBCC-CC----TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccCC-CC----hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 5322 21 1134577888998887642 11111100 11234567777777777
Q ss_pred CCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 757 CDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 757 C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
|.--..+|+ ..+..+++|++|++++|.
T Consensus 415 N~l~~~~~~-~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 415 NEIGQELTG-QEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp SCCEEECCS-GGGTTCTTCCEEECCSCS
T ss_pred CcCccccCc-ccccCcccccEEecCCCC
Confidence 742223433 344667777777777764
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=2.2e-22 Score=235.67 Aligned_cols=345 Identities=18% Similarity=0.185 Sum_probs=244.7
Q ss_pred hhhhccCCeEEecCCCccccccc--CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccC
Q 043214 419 KEALKRCPAISLHNCKIDELLEG--LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSN 495 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~ 495 (793)
.....+++++++++|.+..+++. ..+++|+.|+++++.+. .+|+..|.++++|++|++++|.+..+| ..++++++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS--QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC--ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 34567899999999988776543 37899999999998776 788877899999999999999998776 67899999
Q ss_pred CcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-c--ccCCCCCEEecCCCcCccccChhhhcCCCCcceee
Q 043214 496 LQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-I--GQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELY 570 (793)
Q Consensus 496 L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~ 570 (793)
|++|++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|++|++++|......| ..++.+++|+.|.
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhh
Confidence 9999999998877 56788999999999999999877664 3 356899999999987654444 3366665555555
Q ss_pred cc---------------------------ccccceeecccccccCcccHHHhcCC--CCCcEEEEEeccCCccCccc--c
Q 043214 571 MG---------------------------YTFVEWEIEGLNNVRSKASLHELKQL--SYLTNLEIQIQDANVLPKGL--L 619 (793)
Q Consensus 571 l~---------------------------~~~~~~~~~~~~~~~~~~~l~~l~~l--~~L~~L~i~~~~~~~~~~~~--~ 619 (793)
+. +|.+....+ ..+..+ ++|+.|++++|.+..++... .
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-----------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 270 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-----------TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-----------TTTGGGGGSCCCEEECTTSCCCEECTTTTTT
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-----------hHhhccCcCCCCEEECCCCCcCccCcccccC
Confidence 44 443332222 234444 34999999999887765433 3
Q ss_pred cccccEEEEEecCcc----CcccccCCceEEEeecCCcc------cch---hhHHHhhcCCcEEEeccccCccccccccc
Q 043214 620 SKKLKRYKIFIGDEW----NWSDQLQNSRILKLKLNNST------WLK---DDVFMQMKGIEELYLDEMRGVKNIVYDLD 686 (793)
Q Consensus 620 ~~~L~~L~l~~~~~~----~~~~~~~~L~~L~l~~~~~~------~~p---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 686 (793)
+++|+.|.+..+... ..+..+++|+.|++.++... .+| ......+++|++|++++|......+..+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 349 (680)
T 1ziw_A 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF- 349 (680)
T ss_dssp CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-
T ss_pred cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh-
Confidence 588999998766432 24567889999999764322 222 2223457899999999987655445555
Q ss_pred cCCCCCCCceEeecCCC-cceeccc----------------------cCccCCccCcccceeecccccccc-cccccccc
Q 043214 687 REGFPKLKHPQIQNNPY-FLYVIDS----------------------VKHVPRDAFRALESLSLSNLINLE-KICHGKLK 742 (793)
Q Consensus 687 ~~~l~~L~~L~l~~~~~-l~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~ 742 (793)
..+++|++|++++|.. +..++.. ........+++|+.|+++++ .+. .++ ...
T Consensus 350 -~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~ 425 (680)
T 1ziw_A 350 -TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELT--GQE 425 (680)
T ss_dssp -TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCEEECC--SGG
T ss_pred -ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC-cCccccC--ccc
Confidence 7789999999987641 1111110 00113346778888888884 443 332 123
Q ss_pred cccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 743 AESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 743 ~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
...+++|+.|++++| ++..+++. .+..+++|+.|++++|.
T Consensus 426 ~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 426 WRGLENIFEIYLSYN-KYLQLTRN-SFALVPSLQRLMLRRVA 465 (680)
T ss_dssp GTTCTTCCEEECCSC-SEEECCTT-TTTTCTTCCEEECTTSC
T ss_pred ccCcccccEEecCCC-CcceeChh-hhhcCcccccchhcccc
Confidence 457899999999999 46666553 45679999999998764
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.5e-22 Score=222.59 Aligned_cols=306 Identities=14% Similarity=0.178 Sum_probs=242.8
Q ss_pred cEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEec
Q 043214 448 KLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQ 524 (793)
Q Consensus 448 ~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~ 524 (793)
+.+...+..+. .+|..+ .+++++|++++|.+..+ |..+.++++|++|+|++|.+.. |..++++++|++|+++
T Consensus 14 ~~v~c~~~~l~--~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV--AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS--SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC--cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 45666666555 777754 46899999999999966 5789999999999999999887 6789999999999999
Q ss_pred CCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcE
Q 043214 525 GSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTN 603 (793)
Q Consensus 525 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 603 (793)
+|.+..+|.. +.++++|++|++++|......|. .+..+++|++|++++|.+....+ ..+..+++|+.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~ 156 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISH-----------RAFSGLNSLEQ 156 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECT-----------TSSTTCTTCCE
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeCh-----------hhccCCCCCCE
Confidence 9999999875 68999999999999887655554 48999999999999998765443 36788999999
Q ss_pred EEEEeccCCccCccc--ccccccEEEEEecCccC----cccccCCceEEEeecCCc-ccchhhHHHhhcCCcEEEecccc
Q 043214 604 LEIQIQDANVLPKGL--LSKKLKRYKIFIGDEWN----WSDQLQNSRILKLKLNNS-TWLKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 604 L~i~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~-~~~p~~~~~~l~~L~~L~L~~~~ 676 (793)
|++++|.+..++... .+++|+.|.+..+..-. .+..+++|+.|+++++.. ..+|..... ..+|+.|++++|.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~ 235 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCN 235 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCc
Confidence 999999998887643 45899999998765322 356788999999998543 345555544 3599999999986
Q ss_pred Cccccc-cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeec
Q 043214 677 GVKNIV-YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVK 755 (793)
Q Consensus 677 ~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 755 (793)
.. .++ ..+ ..+++|+.|+|++|. +..++. .....+++|+.|++++ +.++.+. +.....+++|+.|+++
T Consensus 236 l~-~~~~~~~--~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~-n~l~~~~--~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 236 LT-AVPYLAV--RHLVYLRFLNLSYNP-ISTIEG----SMLHELLRLQEIQLVG-GQLAVVE--PYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CC-SCCHHHH--TTCTTCCEEECCSSC-CCEECT----TSCTTCTTCCEEECCS-SCCSEEC--TTTBTTCTTCCEEECC
T ss_pred cc-ccCHHHh--cCccccCeeECCCCc-CCccCh----hhccccccCCEEECCC-CccceEC--HHHhcCcccCCEEECC
Confidence 54 444 344 789999999999986 334422 2346789999999998 5677664 3345678999999999
Q ss_pred cCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 756 SCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 756 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
+| +++.+++ ..+..+++|+.|++++++
T Consensus 305 ~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 305 GN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred CC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 99 7888876 355789999999997654
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=232.57 Aligned_cols=336 Identities=20% Similarity=0.209 Sum_probs=214.0
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYG 504 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 504 (793)
+.++..+..+..+|... .++++.|+++++.+. .+++..|.++++|++|++++|.+..++ ..+.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccC--ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 44555566667777643 468999999999877 677767899999999999999998664 67899999999999999
Q ss_pred ccCC--CcccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCcc-ccChhhhcCCCCcceeeccccccceee
Q 043214 505 VFGD--VSIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLK-VIPSNVLSSLSRLEELYMGYTFVEWEI 580 (793)
Q Consensus 505 ~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~ 580 (793)
.+.. +..++++++|++|++++|+++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEEC
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceec
Confidence 9887 4789999999999999999998876 58999999999999987755 46776 899999999999999876543
Q ss_pred cccccccCcccHHHhcCCCCC-cEEEEEeccCCccCcccc-cccccEEEEEe----------------------------
Q 043214 581 EGLNNVRSKASLHELKQLSYL-TNLEIQIQDANVLPKGLL-SKKLKRYKIFI---------------------------- 630 (793)
Q Consensus 581 ~~~~~~~~~~~l~~l~~l~~L-~~L~i~~~~~~~~~~~~~-~~~L~~L~l~~---------------------------- 630 (793)
+. .+..+.+++.+ +.|+++.|.+..++...+ ..+|+.|.+..
T Consensus 166 ~~--------~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 166 CT--------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp GG--------GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred HH--------HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 31 12222222211 344544444433332211 11222222221
Q ss_pred -----------------------------cC-----ccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEecccc
Q 043214 631 -----------------------------GD-----EWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 631 -----------------------------~~-----~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 676 (793)
++ .......+++|+.|++.++....+|.++.. + +|++|++.+|.
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-~-~L~~L~l~~n~ 315 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-F-GWQHLELVNCK 315 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC-C-CCSEEEEESCB
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc-C-CccEEeeccCc
Confidence 10 111234456666666666655566655543 2 56666666554
Q ss_pred Cccccccc------------------cccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccc
Q 043214 677 GVKNIVYD------------------LDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICH 738 (793)
Q Consensus 677 ~~~~~~~~------------------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 738 (793)
.. .++.. +....+++|+.|++++|... .... .......+++|+.|++++ +.+..++
T Consensus 316 ~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~~~~~~~~L~~L~l~~-n~l~~~~- 389 (570)
T 2z63_A 316 FG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS-FKGC--CSQSDFGTTSLKYLDLSF-NGVITMS- 389 (570)
T ss_dssp CS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCB-EEEE--EEHHHHTCSCCCEEECCS-CSEEEEE-
T ss_pred cc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccC-cccc--ccccccccCccCEEECCC-Ccccccc-
Confidence 32 22210 00123445555555444311 1100 000123456666666666 3444442
Q ss_pred cccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 739 GKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 739 ~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
.....+++|++|++++| .+...++...+.++++|+.|++++|.
T Consensus 390 --~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 390 --SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp --EEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred --ccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc
Confidence 12456788888888887 45555443456778888888888874
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=240.42 Aligned_cols=327 Identities=15% Similarity=0.102 Sum_probs=215.8
Q ss_pred eEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC-CC-ChhhhcccCCcEEEcCCc
Q 043214 427 AISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP-SL-PSSLCLLSNLQTLCLDYG 504 (793)
Q Consensus 427 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~~~ 504 (793)
.++.+++++..+|. ..++++.|+++++.+. .+++..|..+++|++|++++|... .+ |..++++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45667788888888 6789999999999877 565556799999999999999544 55 788999999999999999
Q ss_pred ccCC--CcccccCCcccEEEecCCCCcc-cChh--cccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccccee
Q 043214 505 VFGD--VSIIGELKTLEILSFQGSNIEE-FPRE--IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWE 579 (793)
Q Consensus 505 ~~~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~ 579 (793)
.+.. |..++++++|++|++++|.+.. +|.. ++++++|++|++++|......|+..++++++|++|++++|.+...
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 9887 7889999999999999999884 5665 899999999999999886655544589999999999999987654
Q ss_pred ecccccccCcccHHHhcCCCCCcEEEEEeccCCcc-Cccc-------ccccccEEEEEecCcc-----------------
Q 043214 580 IEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVL-PKGL-------LSKKLKRYKIFIGDEW----------------- 634 (793)
Q Consensus 580 ~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~-~~~~-------~~~~L~~L~l~~~~~~----------------- 634 (793)
.+. .+..+.. ++|+.|+++.|.+... +..+ ...+|+.|.++.+...
T Consensus 164 ~~~--------~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 164 CEH--------ELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp CSG--------GGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CHH--------HcccccC-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 331 1122211 5566666665544321 1110 0012444444333100
Q ss_pred -----------------------Cccc--ccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCC
Q 043214 635 -----------------------NWSD--QLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREG 689 (793)
Q Consensus 635 -----------------------~~~~--~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 689 (793)
.... .+++|+.|+++++....+++.....+++|+.|+|++|......+..+ ..
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~ 312 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--YG 312 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--TT
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh--cC
Confidence 0000 12566777777666555544444446777777777766544444444 56
Q ss_pred CCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHh
Q 043214 690 FPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVA 769 (793)
Q Consensus 690 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~ 769 (793)
+++|++|++++|... .+ .......+++|+.|++++ +.+..++. .....+++|+.|++++| .++.++.
T Consensus 313 l~~L~~L~Ls~N~l~-~~----~~~~~~~l~~L~~L~L~~-N~i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~i~~---- 379 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLG-EL----YSSNFYGLPKVAYIDLQK-NHIAIIQD--QTFKFLEKLQTLDLRDN-ALTTIHF---- 379 (844)
T ss_dssp CSSCCEEEEESCCCS-CC----CSCSCSSCTTCCEEECCS-CCCCCCCS--SCSCSCCCCCEEEEETC-CSCCCSS----
T ss_pred CCCCCEEECCCCCCC-cc----CHHHhcCCCCCCEEECCC-CCCCccCh--hhhcCCCCCCEEECCCC-CCCcccC----
Confidence 777777777776422 11 111344566777777776 35555532 22345677777777766 4554432
Q ss_pred cCCCCCcEEEeccc
Q 043214 770 RSLPQLQTIEVIAC 783 (793)
Q Consensus 770 ~~l~~L~~L~i~~C 783 (793)
+++|+.|++++|
T Consensus 380 --~~~L~~L~l~~N 391 (844)
T 3j0a_A 380 --IPSIPDIFLSGN 391 (844)
T ss_dssp --CCSCSEEEEESC
T ss_pred --CCCcchhccCCC
Confidence 556666666554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.3e-22 Score=230.95 Aligned_cols=300 Identities=20% Similarity=0.238 Sum_probs=244.5
Q ss_pred hhccCCeEEecCCCcccccccC--CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCc
Q 043214 421 ALKRCPAISLHNCKIDELLEGL--ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQ 497 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~ 497 (793)
...+++.+++.++.+..+|... .+++|+.|++.++.+. .+++..|..+++|++|++++|.+..+|. .++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3568899999999998888754 7899999999999877 6777667999999999999999997664 579999999
Q ss_pred EEEcCCcccCC-Ccc-cccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 498 TLCLDYGVFGD-VSI-IGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 498 ~L~L~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
+|+|++|.+.. |+. ++++++|++|++++|.+..+|+ .++.+++|++|++++|... .++ ++.+++|++|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhcccC
Confidence 99999999988 554 6899999999999999997755 6899999999999998764 445 567899999999988
Q ss_pred ccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCc--cCcccccCCceEEEeecCC
Q 043214 575 FVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDE--WNWSDQLQNSRILKLKLNN 652 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~L~~L~l~~~~ 652 (793)
.+.. +....+|+.|++++|.+..++... .++|+.|.+..+.. ..+...+++|+.|+++++.
T Consensus 203 ~l~~----------------l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 203 LLST----------------LAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp CCSE----------------EECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred cccc----------------ccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc
Confidence 7642 344568999999999988777654 37899999877653 3357788999999999998
Q ss_pred cccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccc
Q 043214 653 STWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLIN 732 (793)
Q Consensus 653 ~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 732 (793)
....++..+..+++|+.|+|++|... .++... ..+|+|+.|+|++|.. ..++.. ...+++|+.|++++ +.
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~Ls~N~l-~~i~~~-----~~~l~~L~~L~L~~-N~ 335 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG--QPIPTLKVLDLSHNHL-LHVERN-----QPQFDRLENLYLDH-NS 335 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTSCCC-EEECSS--SCCTTCCEEECCSSCC-CCCGGG-----HHHHTTCSEEECCS-SC
T ss_pred cCCCCHHHhcCccCCCEEECCCCCCC-CCCccc--ccCCCCcEEECCCCCC-CccCcc-----cccCCCCCEEECCC-CC
Confidence 87775544455799999999998654 455554 6799999999999863 344332 35789999999999 45
Q ss_pred cccccccccccccCCCCCeeeeccCC
Q 043214 733 LEKICHGKLKAESFCKLTTLKVKSCD 758 (793)
Q Consensus 733 l~~~~~~~~~~~~~~~L~~L~l~~C~ 758 (793)
+..+ ....+++|+.|++++|+
T Consensus 336 l~~~-----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 336 IVTL-----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCC-----CCCTTCCCSEEECCSSC
T ss_pred CCCc-----ChhhcCCCCEEEeeCCC
Confidence 6655 35678999999999986
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.3e-21 Score=207.58 Aligned_cols=290 Identities=16% Similarity=0.192 Sum_probs=197.6
Q ss_pred CccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcccCC--CcccccCCcccEEE
Q 043214 446 QLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILS 522 (793)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~ 522 (793)
+++.+.+.++... .+|..+ .+.|++|++++|.++.+|. .+..+++|++|++++|.+.. |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc--ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 4566666655544 555533 3577888888888876654 67888888888888888776 56788888888888
Q ss_pred ecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 523 FQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 523 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
+++|.++.+|..+. ++|++|++++|.. ..+++..++.+++|++|++++|.+... ......+..+++|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSS---------GIENGAFQGMKKLS 174 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGG---------GBCTTGGGGCTTCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcc-cccCHhHhcCCccccEEECCCCcCCcc---------CcChhhccCCCCcC
Confidence 88888888887654 7888888888765 445555578888888888888766421 11224677888888
Q ss_pred EEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccc
Q 043214 603 NLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIV 682 (793)
Q Consensus 603 ~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~ 682 (793)
.|++++|.+..+|..+ .++|+.|+++++.....+......+++|+.|++++|......+
T Consensus 175 ~L~l~~n~l~~l~~~~---------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 175 YIRIADTNITTIPQGL---------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp EEECCSSCCCSCCSSC---------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred EEECCCCccccCCccc---------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 8888888887776643 2456666666666555543333446888888888876544434
Q ss_pred cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccccccccc----ccCCCCCeeeeccCC
Q 043214 683 YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKA----ESFCKLTTLKVKSCD 758 (793)
Q Consensus 683 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~L~~L~l~~C~ 758 (793)
..+ ..+++|+.|++++|. +..++. ....+++|+.|++++ +.++.++...+.. ...++|+.|+++++|
T Consensus 234 ~~~--~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 234 GSL--ANTPHLRELHLNNNK-LVKVPG-----GLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTG--GGSTTCCEEECCSSC-CSSCCT-----TTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred hhc--cCCCCCCEEECCCCc-CccCCh-----hhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc
Confidence 344 678888888888874 334432 235678888888887 5677765333321 235788999999887
Q ss_pred CCC-cccchHHhcCCCCCcEEEeccc
Q 043214 759 KLS-FIFSFSVARSLPQLQTIEVIAC 783 (793)
Q Consensus 759 ~L~-~l~~~~~~~~l~~L~~L~i~~C 783 (793)
--. .+++ ..+..+++|+.++++++
T Consensus 305 ~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred ccccccCc-cccccccceeEEEeccc
Confidence 432 2333 35677899999998875
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.2e-22 Score=212.31 Aligned_cols=290 Identities=17% Similarity=0.182 Sum_probs=176.8
Q ss_pred CccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEE
Q 043214 446 QLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILS 522 (793)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~ 522 (793)
+++.+.+.++... .+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.+.. +..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc--ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4666666666554 555543 35677777777777655 3467777777777777777665 45677777777777
Q ss_pred ecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 523 FQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 523 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
+++|.+..+|..+. ++|++|++++|.. ..+|+..++.+++|++|++.+|.+... ......+..+ +|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-KLN 175 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-CCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-ccC
Confidence 77777777776554 6777777777655 345555467777777777777765321 0111234444 677
Q ss_pred EEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccc
Q 043214 603 NLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIV 682 (793)
Q Consensus 603 ~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~ 682 (793)
.|++++|.+..+|..+. ++|+.|+++++....++......+++|+.|++++|......+
T Consensus 176 ~L~l~~n~l~~l~~~~~---------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLP---------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CCBCCSSBCSSCCSSSC---------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred EEECcCCCCCccCcccc---------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 77777777766665431 344455555555444443322335677777777765544333
Q ss_pred cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccccccccc----ccCCCCCeeeeccCC
Q 043214 683 YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKA----ESFCKLTTLKVKSCD 758 (793)
Q Consensus 683 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~L~~L~l~~C~ 758 (793)
..+ ..+++|+.|++++|. +..+|.. ...+++|+.|++++ +.++.++...+.. ..+++|+.|+++++|
T Consensus 235 ~~~--~~l~~L~~L~L~~N~-l~~lp~~-----l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 235 GSL--SFLPTLRELHLDNNK-LSRVPAG-----LPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TGG--GGCTTCCEEECCSSC-CCBCCTT-----GGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hHh--hCCCCCCEEECCCCc-CeecChh-----hhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc
Confidence 344 567777888777764 3334322 34677788888877 5666664322221 125778888888887
Q ss_pred CCC-cccchHHhcCCCCCcEEEecccc
Q 043214 759 KLS-FIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 759 ~L~-~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
-.. .+++ ..+..+++|+.+++++|.
T Consensus 306 ~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 306 VPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ccccccCc-ccccccchhhhhhccccc
Confidence 432 3333 345778899999988875
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=220.18 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=124.9
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYG 504 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 504 (793)
++++++++.+..+|.... ++++.|+++++.+. .+++..|..+++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc--ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 678999999999987665 99999999999887 67777789999999999999999966 789999999999999999
Q ss_pred ccCCCcccccCCcccEEEecCCCCcc--cChhcccCCCCCEEecCCCcCccccChhhhcCCCCc--ceeecccccc
Q 043214 505 VFGDVSIIGELKTLEILSFQGSNIEE--FPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRL--EELYMGYTFV 576 (793)
Q Consensus 505 ~~~~~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L--~~L~l~~~~~ 576 (793)
.+..++.. .+++|++|++++|.+.. +|..++++++|++|++++|.... ..++.+++| ++|++.+|.+
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 99883333 89999999999999985 67899999999999999987644 226677888 9999999987
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=2.8e-21 Score=224.65 Aligned_cols=348 Identities=16% Similarity=0.170 Sum_probs=238.3
Q ss_pred hhhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCC
Q 043214 420 EALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNL 496 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L 496 (793)
..+.++++|++++|.+..+++ +..+++|++|++++|.+. .++++.|.++++|++|+|++|.++.+|. .|.++++|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~--~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC--CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 456789999999999998875 348999999999999887 7888888999999999999999998875 58999999
Q ss_pred cEEEcCCcccCC-C-cccccCCcccEEEecCCCCc--ccChhcccCCCCCEEecCCCcCccccChhhhcCCCCc------
Q 043214 497 QTLCLDYGVFGD-V-SIIGELKTLEILSFQGSNIE--EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRL------ 566 (793)
Q Consensus 497 ~~L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L------ 566 (793)
++|++++|.+.. + ..++++++|++|++++|.+. .+|..++.+++|++|++++|......|.. +..+.++
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhh
Confidence 999999999988 3 46899999999999999887 46788999999999999998654322221 2221111
Q ss_pred ---------------------ceeecccccccee----------------------------------------------
Q 043214 567 ---------------------EELYMGYTFVEWE---------------------------------------------- 579 (793)
Q Consensus 567 ---------------------~~L~l~~~~~~~~---------------------------------------------- 579 (793)
+.+.+..+.....
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 1111111100000
Q ss_pred -----------------------------------ecccccc-------------------------------cCcccHH
Q 043214 580 -----------------------------------IEGLNNV-------------------------------RSKASLH 593 (793)
Q Consensus 580 -----------------------------------~~~~~~~-------------------------------~~~~~l~ 593 (793)
+..+... .......
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 0000000 0000001
Q ss_pred HhcCCCCCcEEEEEeccCCccC---ccc-ccccccEEE-----------------------EEecC-----ccCcccccC
Q 043214 594 ELKQLSYLTNLEIQIQDANVLP---KGL-LSKKLKRYK-----------------------IFIGD-----EWNWSDQLQ 641 (793)
Q Consensus 594 ~l~~l~~L~~L~i~~~~~~~~~---~~~-~~~~L~~L~-----------------------l~~~~-----~~~~~~~~~ 641 (793)
....+++|+.|+++.|.+.... ... ...+|+.+. +..+. .......+.
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 1134678888888877653221 110 123333333 32111 111234556
Q ss_pred CceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccc-cccccccCCCCCCCceEeecCCCcceeccccCccCCccCc
Q 043214 642 NSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKN-IVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFR 720 (793)
Q Consensus 642 ~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 720 (793)
+++.++++.+.....++.....+++|+.|++++|..... .+..+ ..+++|++|+|++|. ++.++.. ....++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--~~l~~L~~L~Ls~N~-L~~l~~~----~f~~l~ 518 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQ-LEQLSPT----AFNSLS 518 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSC-CCEECTT----TTTTCT
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--hhccccCEEECCCCc-cCCcChH----HHcCCC
Confidence 677777777776666666666678999999998875554 34455 788999999999985 4444222 345789
Q ss_pred ccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCC-CCCcEEEecc
Q 043214 721 ALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSL-PQLQTIEVIA 782 (793)
Q Consensus 721 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l-~~L~~L~i~~ 782 (793)
+|+.|+|++ ++++.++ +...+.+++|+.|++++| +++.+++. .+.++ ++|+.|++++
T Consensus 519 ~L~~L~Ls~-N~l~~l~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 519 SLQVLNMSH-NNFFSLD--TFPYKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TCCEEECTT-SCCCBCC--CGGGTTCTTCCEEECTTS-CCCBCCSS-CTTCCCTTCCEEECTT
T ss_pred CCCEEECCC-CcCCCCC--hhHHhCCCCCCEEECCCC-cCCCCCHH-HHHhhhCcCCEEEeeC
Confidence 999999998 6788775 334567899999999998 68888764 34555 6899999954
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.8e-21 Score=220.61 Aligned_cols=342 Identities=16% Similarity=0.118 Sum_probs=238.6
Q ss_pred hhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 421 ALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
.+.+++++++++|.+..+++ +..+++|+.|+++++.+. .+++..|.++++|++|++++|.+..+|.. .+++|++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 125 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRH 125 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSE
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC--cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCE
Confidence 45789999999999988874 458999999999999877 67666779999999999999999999877 8999999
Q ss_pred EEcCCcccCC---CcccccCCcccEEEecCCCCcccChhcccCCCC--CEEecCCCcC--ccccChhhhc----------
Q 043214 499 LCLDYGVFGD---VSIIGELKTLEILSFQGSNIEEFPREIGQLTRL--RLLNLAYCNL--LKVIPSNVLS---------- 561 (793)
Q Consensus 499 L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~~i~---------- 561 (793)
|++++|.+.. |..++++++|++|++++|.+... .+..+++| ++|++++|.. ....|.. +.
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l~~~~l~l~ 202 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQIPNTTVLHLV 202 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEECCEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-ccccCcceEEEE
Confidence 9999999876 36899999999999999988753 45666666 9999888766 3333322 22
Q ss_pred ----------------CCCCcceeecccc---------------------------------------------------
Q 043214 562 ----------------SLSRLEELYMGYT--------------------------------------------------- 574 (793)
Q Consensus 562 ----------------~l~~L~~L~l~~~--------------------------------------------------- 574 (793)
.+++|+.|++.+|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 2334444444433
Q ss_pred ----ccceeecccc------ccc--------------CcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEe
Q 043214 575 ----FVEWEIEGLN------NVR--------------SKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFI 630 (793)
Q Consensus 575 ----~~~~~~~~~~------~~~--------------~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~ 630 (793)
.+.+.+|... ... ....+..+....+|+.|+++.+.+...+....+++|+.|.+..
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 2222111000 000 0000111111133445555544443322112346788888876
Q ss_pred cCc----cCcccccCCceEEEeecCCcccchhh--HHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCc
Q 043214 631 GDE----WNWSDQLQNSRILKLKLNNSTWLKDD--VFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYF 704 (793)
Q Consensus 631 ~~~----~~~~~~~~~L~~L~l~~~~~~~~p~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 704 (793)
+.. ......+++|+.|+++++....++.. ....+++|+.|++++|.....++... ...+++|+.|++++|...
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNMLT 441 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCCCTTCCEEECCSSCCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcCcccCCEEECCCCCCC
Confidence 542 22456788999999999888766532 23457999999999998765455431 267899999999998643
Q ss_pred ceeccccCccCCccC-cccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccc
Q 043214 705 LYVIDSVKHVPRDAF-RALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIAC 783 (793)
Q Consensus 705 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 783 (793)
..++ ..+ ++|+.|++++ +.++.++ .....+++|+.|++++| +++.+|+. .+..+++|+.|+++++
T Consensus 442 ~~~~--------~~l~~~L~~L~L~~-N~l~~ip---~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 442 GSVF--------RCLPPKVKVLDLHN-NRIMSIP---KDVTHLQALQELNVASN-QLKSVPDG-VFDRLTSLQYIWLHDN 507 (562)
T ss_dssp GGGG--------SSCCTTCSEEECCS-SCCCCCC---TTTTSSCCCSEEECCSS-CCCCCCTT-STTTCTTCCCEECCSC
T ss_pred cchh--------hhhcCcCCEEECCC-CcCcccC---hhhcCCCCCCEEECCCC-CCCCCCHH-HHhcCCCCCEEEecCC
Confidence 2221 233 6999999999 5888884 34447999999999999 78888764 4678999999999876
Q ss_pred c
Q 043214 784 K 784 (793)
Q Consensus 784 ~ 784 (793)
+
T Consensus 508 ~ 508 (562)
T 3a79_B 508 P 508 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.7e-21 Score=203.15 Aligned_cols=230 Identities=23% Similarity=0.307 Sum_probs=152.2
Q ss_pred CCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecC
Q 043214 469 GMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLA 547 (793)
Q Consensus 469 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 547 (793)
...+++.|+++++.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578999999999999999999999999999999999888 778999999999999999999999999999999999999
Q ss_pred CCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEE
Q 043214 548 YCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYK 627 (793)
Q Consensus 548 ~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~ 627 (793)
+|...+.+|.. ++. ..+. ..+..+++|+.|++++|.+..+|..+
T Consensus 159 ~n~~~~~~p~~-~~~------~~~~--------------------~~~~~l~~L~~L~L~~n~l~~lp~~l--------- 202 (328)
T 4fcg_A 159 ACPELTELPEP-LAS------TDAS--------------------GEHQGLVNLQSLRLEWTGIRSLPASI--------- 202 (328)
T ss_dssp EETTCCCCCSC-SEE------EC-C--------------------CCEEESTTCCEEEEEEECCCCCCGGG---------
T ss_pred CCCCccccChh-Hhh------ccch--------------------hhhccCCCCCEEECcCCCcCcchHhh---------
Confidence 99888888865 332 1100 13456677777777777776655442
Q ss_pred EEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCccee
Q 043214 628 IFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYV 707 (793)
Q Consensus 628 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 707 (793)
..+++|+.|+++++....+|..+. .+++|+.|++++|.....+|..+ +.+++|+.|++++|.....+
T Consensus 203 ----------~~l~~L~~L~L~~N~l~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 203 ----------ANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp ----------GGCTTCCEEEEESSCCCCCCGGGG-GCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCCBC
T ss_pred ----------cCCCCCCEEEccCCCCCcCchhhc-cCCCCCEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchhhc
Confidence 123444445555544444444432 24666666666666555555544 55566666666655544433
Q ss_pred ccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeec
Q 043214 708 IDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVK 755 (793)
Q Consensus 708 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 755 (793)
+.. ...+++|+.|+|++|+.+..+ +...+.+++|+.+.+.
T Consensus 270 p~~-----~~~l~~L~~L~L~~n~~~~~i---P~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 270 PLD-----IHRLTQLEKLDLRGCVNLSRL---PSLIAQLPANCIILVP 309 (328)
T ss_dssp CTT-----GGGCTTCCEEECTTCTTCCCC---CGGGGGSCTTCEEECC
T ss_pred chh-----hhcCCCCCEEeCCCCCchhhc---cHHHhhccCceEEeCC
Confidence 221 234445555555554444444 2233344444444443
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=3.7e-20 Score=215.12 Aligned_cols=149 Identities=22% Similarity=0.274 Sum_probs=126.0
Q ss_pred eEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcc
Q 043214 427 AISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGV 505 (793)
Q Consensus 427 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 505 (793)
.++-++.++..+|..+ .++++.|+++++.+. .+++..|.++++|++|+|++|.+..+|+ .|.+|++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3444455667777654 458999999999887 8888888999999999999999998764 68999999999999999
Q ss_pred cCC-C-cccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCcc-ccChhhhcCCCCcceeecccccccee
Q 043214 506 FGD-V-SIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLK-VIPSNVLSSLSRLEELYMGYTFVEWE 579 (793)
Q Consensus 506 ~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~ 579 (793)
+.. | ..+.++++|++|++++|+++.+|.. ++++++|++|++++|.... .+|.. ++.+++|++|++++|.+...
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccc
Confidence 988 4 5689999999999999999998864 8999999999999987654 34554 78999999999999877543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.2e-20 Score=200.20 Aligned_cols=293 Identities=14% Similarity=0.127 Sum_probs=218.9
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEc
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCL 501 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L 501 (793)
..++.++++++.+..+|... .++++.|++.++.+. .+++..|..+++|++|++++|.+..+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46788999999988888765 579999999999876 67666679999999999999999865 778999999999999
Q ss_pred CCcccCC-CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCcc-ccChhhhcCCCCcceeeccccccce
Q 043214 502 DYGVFGD-VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLK-VIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 502 ~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
++|.+.. |..+. ++|++|++++|.+..+|.. +..+++|++|++++|.... ..++..++.+ +|++|++++|.+..
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9999888 55555 8999999999999988765 8899999999999987642 2333336677 99999999998754
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchh
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD 658 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~ 658 (793)
... .+ .++|+.|++++|.+..++... ...+++|+.|+++++....++.
T Consensus 187 l~~------------~~--~~~L~~L~l~~n~i~~~~~~~------------------l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 187 IPK------------DL--PETLNELHLDHNKIQAIELED------------------LLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CCS------------SS--CSSCSCCBCCSSCCCCCCTTS------------------STTCTTCSCCBCCSSCCCCCCT
T ss_pred cCc------------cc--cCCCCEEECCCCcCCccCHHH------------------hcCCCCCCEEECCCCcCCcCCh
Confidence 211 11 268999999999887765332 2346777888888887777776
Q ss_pred hHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCcc--CCccCcccceeecccccccccc
Q 043214 659 DVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHV--PRDAFRALESLSLSNLINLEKI 736 (793)
Q Consensus 659 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~ 736 (793)
.....+++|+.|++++|... .+|..+ ..+++|+.|++++|. ++.++...... ....+++|+.|++.+++ +..+
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~ 309 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGL--PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYW 309 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTG--GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGG
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhh--hcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc-cccc
Confidence 44455799999999998654 677666 789999999999885 44443221111 12236889999999854 5433
Q ss_pred cccccccccCCCCCeeeeccCC
Q 043214 737 CHGKLKAESFCKLTTLKVKSCD 758 (793)
Q Consensus 737 ~~~~~~~~~~~~L~~L~l~~C~ 758 (793)
...+.....+++|+.|++++|.
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 2223344578899999998875
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=3e-20 Score=204.98 Aligned_cols=281 Identities=20% Similarity=0.183 Sum_probs=176.2
Q ss_pred hccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEc
Q 043214 422 LKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCL 501 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 501 (793)
+.+++.+++++|.+..+|.. .++|+.|+++++.+. .++. ..++|++|++++|.+..+| .++++++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~--~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK--ALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS--CCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccC--cccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 46778888888877776653 477888888777655 3332 1257788888888777777 4777888888888
Q ss_pred CCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeec
Q 043214 502 DYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIE 581 (793)
Q Consensus 502 ~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 581 (793)
++|.+..++.. ..+|++|++++|.++.+| .++.+++|++|++++|... .+|.. .++|++|++++|.+. .++
T Consensus 161 ~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 161 DNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp CSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC
T ss_pred CCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc
Confidence 88777663221 247788888877777777 5777788888888777653 35542 247777777777654 222
Q ss_pred ccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHH
Q 043214 582 GLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVF 661 (793)
Q Consensus 582 ~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~ 661 (793)
.++.+++|+.|++++|.+..+|.. .++|+.|.+..+..-.....+++|+.|+++++....+|..
T Consensus 232 ------------~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~-- 295 (454)
T 1jl5_A 232 ------------ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL-- 295 (454)
T ss_dssp ------------CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC--
T ss_pred ------------ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCc--
Confidence 356777777777777777766653 3677777776554333333346677777777666555421
Q ss_pred HhhcCCcEEEeccccCccccccccccCCC-CCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccc
Q 043214 662 MQMKGIEELYLDEMRGVKNIVYDLDREGF-PKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGK 740 (793)
Q Consensus 662 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 740 (793)
.++|+.|++++|.... ++ .+ ++|+.|++++|. +..++ ..+++|+.|++++ +.++.++.
T Consensus 296 --~~~L~~L~l~~N~l~~-i~------~~~~~L~~L~Ls~N~-l~~lp--------~~~~~L~~L~L~~-N~l~~lp~-- 354 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRS-LC------DLPPSLEELNVSNNK-LIELP--------ALPPRLERLIASF-NHLAEVPE-- 354 (454)
T ss_dssp --CTTCCEEECCSSCCSE-EC------CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCS-SCCSCCCC--
T ss_pred --CCcCCEEECcCCcCCc-cc------CCcCcCCEEECCCCc-ccccc--------ccCCcCCEEECCC-Cccccccc--
Confidence 2567777776664322 21 22 467777776654 22221 1246677777766 35555531
Q ss_pred cccccCCCCCeeeeccCCCCCc
Q 043214 741 LKAESFCKLTTLKVKSCDKLSF 762 (793)
Q Consensus 741 ~~~~~~~~L~~L~l~~C~~L~~ 762 (793)
.+++|+.|++++| +++.
T Consensus 355 ----~l~~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 355 ----LPQNLKQLHVEYN-PLRE 371 (454)
T ss_dssp ----CCTTCCEEECCSS-CCSS
T ss_pred ----hhhhccEEECCCC-CCCc
Confidence 3566777777666 3444
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.8e-20 Score=196.17 Aligned_cols=292 Identities=14% Similarity=0.165 Sum_probs=218.8
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEc
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCL 501 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L 501 (793)
.+++.+++.++.+..+|... .++++.|+++++.+. .++...|..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 46788899888888887654 478999999999877 67776779999999999999999876 788999999999999
Q ss_pred CCcccCC-CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCcc--ccChhhhcCCCCcceeeccccccc
Q 043214 502 DYGVFGD-VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLK--VIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 502 ~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
++|.+.. |..+. ++|++|++++|.+..+|.. +..+++|++|++++|.... ..+. .++.+++|++|++++|.+.
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCccc
Confidence 9999887 55554 7999999999999988764 7899999999999987642 3343 4889999999999998775
Q ss_pred eeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccch
Q 043214 578 WEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLK 657 (793)
Q Consensus 578 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p 657 (793)
.... .+ .++|+.|++++|.+..++... +..+++|+.|+++++.....+
T Consensus 185 ~l~~------------~~--~~~L~~L~l~~n~l~~~~~~~------------------~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 185 TIPQ------------GL--PPSLTELHLDGNKITKVDAAS------------------LKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp SCCS------------SC--CTTCSEEECTTSCCCEECTGG------------------GTTCTTCCEEECCSSCCCEEC
T ss_pred cCCc------------cc--cccCCEEECCCCcCCccCHHH------------------hcCCCCCCEEECCCCcCceeC
Confidence 3211 11 278999999998887654321 234677888888887777776
Q ss_pred hhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCcc--CCccCcccceeeccccccccc
Q 043214 658 DDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHV--PRDAFRALESLSLSNLINLEK 735 (793)
Q Consensus 658 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~ 735 (793)
......+++|+.|++++|... .+|..+ ..+++|++|++++|. ++.++...... ....++.|+.|++.+ +.+..
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~-N~~~~ 307 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGL--ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS-NPVQY 307 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTT--TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS-SSSCG
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhh--ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeec-Ccccc
Confidence 544445789999999998654 677666 789999999999885 44443322111 122457899999998 44555
Q ss_pred ccccccccccCCCCCeeeeccC
Q 043214 736 ICHGKLKAESFCKLTTLKVKSC 757 (793)
Q Consensus 736 ~~~~~~~~~~~~~L~~L~l~~C 757 (793)
+...+....++++|+.++++++
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC---
T ss_pred cccCccccccccceeEEEeccc
Confidence 4322334456788888888876
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=5.2e-20 Score=203.24 Aligned_cols=320 Identities=15% Similarity=0.102 Sum_probs=221.1
Q ss_pred chhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCc
Q 043214 418 DKEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQ 497 (793)
Q Consensus 418 ~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~ 497 (793)
......+++++++++|.+..++ ...+++|+.|+++++.+. .++ +..+++|++|++++|.+..+| ++.+++|+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~--~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~ 130 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLT--NLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCS--CCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCc--eee---cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence 3456788999999999998875 668899999999998876 444 588999999999999998876 88999999
Q ss_pred EEEcCCcccCCCcccccCCcccEEEecCC-CCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccc
Q 043214 498 TLCLDYGVFGDVSIIGELKTLEILSFQGS-NIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFV 576 (793)
Q Consensus 498 ~L~L~~~~~~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 576 (793)
+|++++|.+..+ .++.+++|++|++++| .+..+ .++.+++|++|++++|... .+| ++.+++|++|++++|.+
T Consensus 131 ~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 131 YLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEECCSSCC
T ss_pred EEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec---cccCCCCCEEECcCCcC
Confidence 999999998885 3888999999999998 56666 4788899999999988664 466 67889999999988876
Q ss_pred ceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccC-cccccCCceEEEeecCCcc-
Q 043214 577 EWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWN-WSDQLQNSRILKLKLNNST- 654 (793)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~L~~L~l~~~~~~- 654 (793)
... .++.+++|+.|++++|.+..+| ...+++|+.|.++.+..-. ....+++|+.|.+..+...
T Consensus 204 ~~~--------------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 204 TKL--------------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp SCC--------------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred Cee--------------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence 431 3677888899999988888877 3345788888887654322 1334556665555443222
Q ss_pred ----------cchhhHHHhhcCCcEEEeccccCcccccccc------ccCCCCCCCceEeecCCCcceeccccCccCCcc
Q 043214 655 ----------WLKDDVFMQMKGIEELYLDEMRGVKNIVYDL------DREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDA 718 (793)
Q Consensus 655 ----------~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 718 (793)
.+| ...+++|+.|++++|.....++... ....+++|+.|++++|.. +. .....
T Consensus 269 L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l-~~-------l~l~~ 337 (457)
T 3bz5_A 269 IDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL-TE-------LDVSH 337 (457)
T ss_dssp CCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC-SC-------CCCTT
T ss_pred EECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc-cc-------ccccc
Confidence 233 1346899999999998776655311 123455666666655532 11 13567
Q ss_pred Ccccceeecccccccccccccc---c------ccccCCCCCeeeeccCCCCCc-ccchHHhcCCCCCcEEEec
Q 043214 719 FRALESLSLSNLINLEKICHGK---L------KAESFCKLTTLKVKSCDKLSF-IFSFSVARSLPQLQTIEVI 781 (793)
Q Consensus 719 ~~~L~~L~l~~~~~l~~~~~~~---~------~~~~~~~L~~L~l~~C~~L~~-l~~~~~~~~l~~L~~L~i~ 781 (793)
+++|+.|++++ +.++.++... . ..+.+..|..++++++ +++. +|+ .+.....++......
T Consensus 338 l~~L~~L~l~~-N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N-~l~g~ip~-~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 338 NTKLKSLSCVN-AHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNN-SLTIAVSP-DLLDQFGNPMNIEPG 407 (457)
T ss_dssp CTTCSEEECCS-SCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTT-BEEEECCT-TCBCTTSCCCEEEES
T ss_pred CCcCcEEECCC-CCCCCccccccccccCCcEEecceeeecCccccccC-cEEEEcCh-hHhcccCceeeccCC
Confidence 89999999987 5665542100 0 0123345666666665 3443 333 333344455444443
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=9.6e-20 Score=200.93 Aligned_cols=298 Identities=17% Similarity=0.106 Sum_probs=237.2
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcC
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLD 502 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 502 (793)
.+++++++++|.+..+|.. .++|+.|+++++.+. .+|. .+++|++|++++|.+..+|... ++|++|+++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~--~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~ 139 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT--ELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVS 139 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS--SCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECC
T ss_pred cCCCEEEecCCccccCCCC--cCCCCEEEccCCcCC--cccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECc
Confidence 4678999999999888874 589999999998877 5664 3589999999999998877532 799999999
Q ss_pred CcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecc
Q 043214 503 YGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEG 582 (793)
Q Consensus 503 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 582 (793)
+|.+..++.++++++|++|++++|+++.+|..+ .+|++|++++|... .+|. ++.+++|++|++++|.+.. ++.
T Consensus 140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~-~l~~--~~~l~~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCC
T ss_pred CCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC-cCcc--ccCCCCCCEEECCCCcCCc-CCC
Confidence 999988558999999999999999999988754 59999999998764 4774 8999999999999998753 221
Q ss_pred cccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHH
Q 043214 583 LNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFM 662 (793)
Q Consensus 583 ~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~ 662 (793)
..++|+.|++++|.+..+|....+++|+.|.+..+..-.....+++|+.|+++++....+|..
T Consensus 213 --------------~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~--- 275 (454)
T 1jl5_A 213 --------------LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL--- 275 (454)
T ss_dssp --------------CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---
T ss_pred --------------CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---
Confidence 124899999999999988865466899999998765443334568999999999888887764
Q ss_pred hhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccc
Q 043214 663 QMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLK 742 (793)
Q Consensus 663 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 742 (793)
+++|+.|++++|... .++. ..++|+.|++++|. +..++ ...++|+.|++++ +.++.++.
T Consensus 276 -~~~L~~L~ls~N~l~-~l~~-----~~~~L~~L~l~~N~-l~~i~--------~~~~~L~~L~Ls~-N~l~~lp~---- 334 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFS-GLSE-----LPPNLYYLNASSNE-IRSLC--------DLPPSLEELNVSN-NKLIELPA---- 334 (454)
T ss_dssp -CTTCCEEECCSSCCS-EESC-----CCTTCCEEECCSSC-CSEEC--------CCCTTCCEEECCS-SCCSCCCC----
T ss_pred -cCcCCEEECcCCccC-cccC-----cCCcCCEEECcCCc-CCccc--------CCcCcCCEEECCC-Cccccccc----
Confidence 489999999998643 3332 13799999999885 33331 1225899999998 66776632
Q ss_pred cccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 743 AESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 743 ~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
.+++|+.|++++| +++.+|. .+++|+.|++++|.
T Consensus 335 --~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 335 --LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP 368 (454)
T ss_dssp --CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred --cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence 3699999999999 7888875 37999999999874
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.5e-20 Score=197.30 Aligned_cols=154 Identities=18% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCccEEEccccCcccc-ccChhhhcCCCcceEEEecC-CcCC-CCChhhhcccCCcEEEcCCcccCC--CcccccCCccc
Q 043214 445 PQLKLLHMATEDLSVQ-QIPNNFFIGMTELRVLDFVA-MHLP-SLPSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLE 519 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~Lr~L~l~~-~~~~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~ 519 (793)
.+++.|++.++.+... .+|.. +..+++|++|++++ +.+. .+|..++++++|++|++++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4556666665554410 23433 46677777777774 5554 566667777777777777776653 55677777777
Q ss_pred EEEecCCCCc-ccChhcccCCCCCEEecCCCcCccccChhhhcCCC-CcceeeccccccceeecccccccCcccHHHhcC
Q 043214 520 ILSFQGSNIE-EFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLS-RLEELYMGYTFVEWEIEGLNNVRSKASLHELKQ 597 (793)
Q Consensus 520 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 597 (793)
+|++++|.+. .+|..+..+++|++|++++|.....+|.. ++.++ +|++|++++|.+.+.++ ..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~-----------~~~~~ 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-----------PTFAN 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-----------GGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC-----------hHHhC
Confidence 7777777666 56666777777777777776665566655 56665 67777777666654443 23444
Q ss_pred CCCCcEEEEEeccCC
Q 043214 598 LSYLTNLEIQIQDAN 612 (793)
Q Consensus 598 l~~L~~L~i~~~~~~ 612 (793)
++ |+.|++++|.+.
T Consensus 197 l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLE 210 (313)
T ss_dssp CC-CSEEECCSSEEE
T ss_pred Cc-ccEEECcCCccc
Confidence 44 666666655543
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.5e-20 Score=197.30 Aligned_cols=176 Identities=18% Similarity=0.304 Sum_probs=152.7
Q ss_pred ccCCeEEecCCCcc---cccccC-CCCCccEEEccc-cCccccccChhhhcCCCcceEEEecCCcCC-CCChhhhcccCC
Q 043214 423 KRCPAISLHNCKID---ELLEGL-ECPQLKLLHMAT-EDLSVQQIPNNFFIGMTELRVLDFVAMHLP-SLPSSLCLLSNL 496 (793)
Q Consensus 423 ~~~~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L 496 (793)
.++++++++++.+. .+|... .+++|++|++.+ +.+.. .+|.. |..+++|++|++++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 57899999999986 466544 899999999995 66653 66665 589999999999999998 889999999999
Q ss_pred cEEEcCCcccCC--CcccccCCcccEEEecCCCCc-ccChhcccCC-CCCEEecCCCcCccccChhhhcCCCCcceeecc
Q 043214 497 QTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIE-EFPREIGQLT-RLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMG 572 (793)
Q Consensus 497 ~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~ 572 (793)
++|++++|.+.. |..++.+++|++|++++|.+. .+|..++.++ +|++|++++|.....+|.. ++.++ |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 999999999874 788999999999999999998 8999999998 9999999999887788876 78887 9999999
Q ss_pred ccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCc
Q 043214 573 YTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANV 613 (793)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~ 613 (793)
+|.+....+ ..+..+++|+.|++++|.+..
T Consensus 206 ~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 206 RNMLEGDAS-----------VLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSEEEECCG-----------GGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCC-----------HHHhcCCCCCEEECCCCceee
Confidence 998875544 467889999999999887753
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=8.8e-20 Score=192.58 Aligned_cols=230 Identities=20% Similarity=0.203 Sum_probs=176.7
Q ss_pred ccCCcEEEcCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeec
Q 043214 493 LSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYM 571 (793)
Q Consensus 493 l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l 571 (793)
..++++|+++++.+.. |+.++++++|++|++++|.+..+|..++++++|++|++++|... .+|.. ++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEEC
Confidence 4678888888888877 77788888888888888888888888888888888888887664 67765 677777777777
Q ss_pred cccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecC
Q 043214 572 GYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLN 651 (793)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~ 651 (793)
++|...+.++ ..+.. .. ....+..+++|+.|+++++
T Consensus 158 ~~n~~~~~~p----------------------------------~~~~~-----~~-----~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 158 RACPELTELP----------------------------------EPLAS-----TD-----ASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp EEETTCCCCC----------------------------------SCSEE-----EC------CCCEEESTTCCEEEEEEE
T ss_pred CCCCCccccC----------------------------------hhHhh-----cc-----chhhhccCCCCCEEECcCC
Confidence 7665544333 11100 00 0001234678888888888
Q ss_pred CcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccc
Q 043214 652 NSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLI 731 (793)
Q Consensus 652 ~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 731 (793)
....+|.++.. +++|++|++++|... .++..+ ..+++|++|++++|.....++. ....+++|+.|++++|+
T Consensus 194 ~l~~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~-----~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 194 GIRSLPASIAN-LQNLKSLKIRNSPLS-ALGPAI--HHLPKLEELDLRGCTALRNYPP-----IFGGRAPLKRLILKDCS 264 (328)
T ss_dssp CCCCCCGGGGG-CTTCCEEEEESSCCC-CCCGGG--GGCTTCCEEECTTCTTCCBCCC-----CTTCCCCCCEEECTTCT
T ss_pred CcCcchHhhcC-CCCCCEEEccCCCCC-cCchhh--ccCCCCCEEECcCCcchhhhHH-----HhcCCCCCCEEECCCCC
Confidence 88888887654 799999999998765 466656 7899999999999987766543 34678999999999988
Q ss_pred ccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEEEecc
Q 043214 732 NLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIA 782 (793)
Q Consensus 732 ~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 782 (793)
.+..+ +...+.+++|+.|+|++|+.+..+|. .+.++++|+.+++..
T Consensus 265 ~~~~~---p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 265 NLLTL---PLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp TCCBC---CTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred chhhc---chhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 88777 44567899999999999999998876 578899999998863
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=8.7e-20 Score=191.21 Aligned_cols=242 Identities=20% Similarity=0.209 Sum_probs=178.3
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC---ChhhhcccCCcEEEcC
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL---PSSLCLLSNLQTLCLD 502 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~L~ 502 (793)
+.++..++.+..+|... .++++.|.+.++.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777777777777644 468999999888776 78888788899999999999988754 6777788999999999
Q ss_pred CcccCC-CcccccCCcccEEEecCCCCcccCh--hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce-
Q 043214 503 YGVFGD-VSIIGELKTLEILSFQGSNIEEFPR--EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW- 578 (793)
Q Consensus 503 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~- 578 (793)
+|.+.. +..+..+++|++|++++|.+..+|. .+..+++|++|++++|......|. .++.+++|++|++++|.+..
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccc
Confidence 998877 6778889999999999998887764 688889999999998876555444 47888999999998887754
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchh
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKD 658 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~ 658 (793)
..+ ..+..+++|+.|++++|.+..++... +..+++|+.|+++++....++.
T Consensus 166 ~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~------------------~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 166 FLP-----------DIFTELRNLTFLDLSQCQLEQLSPTA------------------FNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp EEC-----------SCCTTCTTCCEEECTTSCCCEECTTT------------------TTTCTTCCEEECTTSCCSBCCS
T ss_pred cch-----------hHHhhCcCCCEEECCCCCcCCcCHHH------------------hcCCCCCCEEECCCCccCccCh
Confidence 222 35677888888888888776653321 2235566667776666665555
Q ss_pred hHHHhhcCCcEEEeccccCccccccccccCCCC-CCCceEeecCC
Q 043214 659 DVFMQMKGIEELYLDEMRGVKNIVYDLDREGFP-KLKHPQIQNNP 702 (793)
Q Consensus 659 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~ 702 (793)
.....+++|+.|++++|......+..+ ..+| +|+.|++++|+
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSC--CCCCTTCCEEECTTCC
T ss_pred hhccCcccCCEeECCCCCCcccCHHHH--HhhhccCCEEEccCCC
Confidence 434446777777777776555445444 5554 77777777765
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=194.21 Aligned_cols=251 Identities=20% Similarity=0.198 Sum_probs=131.2
Q ss_pred cceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecC
Q 043214 472 ELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLA 547 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~ 547 (793)
+|++|++++|.++.+|. .+.++++|++|++++|.+.. +..++++++|++|++++|.++.+|.. ++++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555554443 45555555555555555544 23455555555555555555555544 4555555555555
Q ss_pred CCcCccccCh-hhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEE
Q 043214 548 YCNLLKVIPS-NVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRY 626 (793)
Q Consensus 548 ~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L 626 (793)
+|.. ..+|. ..++.+++|++|++++|.....++ ...+..+++|+.|++++|.+...+..
T Consensus 133 ~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~--------- 192 (353)
T 2z80_A 133 GNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQ----------RKDFAGLTFLEELEIDASDLQSYEPK--------- 192 (353)
T ss_dssp TCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEEC----------TTTTTTCCEEEEEEEEETTCCEECTT---------
T ss_pred CCCC-cccCchhhhccCCCCcEEECCCCccccccC----------HHHccCCCCCCEEECCCCCcCccCHH---------
Confidence 5543 23443 224555555555555553111111 12345555666666665555443211
Q ss_pred EEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccc-cCCCCCCCceEeecCCCcc
Q 043214 627 KIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLD-REGFPKLKHPQIQNNPYFL 705 (793)
Q Consensus 627 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~ 705 (793)
....+++|+.|+++++....+|......+++|+.|++++|......+..+. ....+.++.+++.++..-.
T Consensus 193 ---------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 193 ---------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp ---------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred ---------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 112345555666666666666666655567888888887754432222111 1235567777777653211
Q ss_pred ----eeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCC
Q 043214 706 ----YVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDK 759 (793)
Q Consensus 706 ----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~ 759 (793)
.++. ....+++|+.|++++ +.++.++... .+.+++|++|++++|+-
T Consensus 264 ~~l~~l~~-----~l~~l~~L~~L~Ls~-N~l~~i~~~~--~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 264 ESLFQVMK-----LLNQISGLLELEFSR-NQLKSVPDGI--FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHHH-----HHHTCTTCCEEECCS-SCCCCCCTTT--TTTCTTCCEEECCSSCB
T ss_pred cchhhhHH-----HHhcccCCCEEECCC-CCCCccCHHH--HhcCCCCCEEEeeCCCc
Confidence 0110 124567777777777 4566663211 24677777777777753
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=192.00 Aligned_cols=258 Identities=16% Similarity=0.223 Sum_probs=150.1
Q ss_pred EEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCccc
Q 043214 428 ISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVF 506 (793)
Q Consensus 428 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 506 (793)
.+.+++.+..+|... .++|+.|+++++.+. .++...|.++++|++|++++|.+..+ |..+.++++|++|++++|.+
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 445555666666533 346777777776655 55555566777777777777776644 34567777777777777776
Q ss_pred CC-Ccc-cccCCcccEEEecCCCCcccCh--hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecc
Q 043214 507 GD-VSI-IGELKTLEILSFQGSNIEEFPR--EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEG 582 (793)
Q Consensus 507 ~~-~~~-i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 582 (793)
.. ++. ++++++|++|++++|.++.+|. .+..+++|++|++++|.....+++..++.+++|++|++++|.+....+
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP- 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-
Confidence 66 333 6677777777777777776665 466777777777777654555554446677777777777766554433
Q ss_pred cccccCcccHHHhcCCCCCcEEEEEeccCCccCcccc--cccccEEEEEecCccCc-------ccccCCceEEEeecCCc
Q 043214 583 LNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLL--SKKLKRYKIFIGDEWNW-------SDQLQNSRILKLKLNNS 653 (793)
Q Consensus 583 ~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-------~~~~~~L~~L~l~~~~~ 653 (793)
..+..+++|+.|++++|.+..++.... +++|+.|.++.+..-.. ....+.++.+.+..+..
T Consensus 192 ----------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 192 ----------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ----------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred ----------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 355666777777777776665554432 34555555544331110 11233444455444322
Q ss_pred c-----cchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCC
Q 043214 654 T-----WLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 654 ~-----~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
. .+|.++.. +++|+.|++++|... .+|..+ ...+++|++|++++|+
T Consensus 262 ~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~-~i~~~~-~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 262 TDESLFQVMKLLNQ-ISGLLELEFSRNQLK-SVPDGI-FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CHHHHHHHHHHHHT-CTTCCEEECCSSCCC-CCCTTT-TTTCTTCCEEECCSSC
T ss_pred cCcchhhhHHHHhc-ccCCCEEECCCCCCC-ccCHHH-HhcCCCCCEEEeeCCC
Confidence 2 23444432 466666666666433 333321 1456666666666654
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1e-18 Score=198.60 Aligned_cols=255 Identities=20% Similarity=0.168 Sum_probs=167.7
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcC
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLD 502 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 502 (793)
.+++.++++++.+..+|.... ++|+.|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~--~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT--SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS--CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC--CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 457889999999988887654 88999999988776 6765 57889999999999988887 67899999999
Q ss_pred CcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecc
Q 043214 503 YGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEG 582 (793)
Q Consensus 503 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~ 582 (793)
+|.+..++. .+.+|++|++++|+++.+|.. +++|++|++++|.. ..+|. .+++|+.|++.+|.+... +
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l~~l-~- 177 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTSL-P- 177 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCC-C-
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCCCCC-c-
Confidence 998888433 678899999999999888874 48899999998865 44564 356788888888876431 1
Q ss_pred cccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHH
Q 043214 583 LNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFM 662 (793)
Q Consensus 583 ~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~ 662 (793)
..+++|+.|++++|.+..+|.. .++|+. |.+.++....+|..
T Consensus 178 -------------~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~--------------------L~L~~N~l~~l~~~--- 219 (622)
T 3g06_A 178 -------------MLPSGLQELSVSDNQLASLPTL--PSELYK--------------------LWAYNNRLTSLPAL--- 219 (622)
T ss_dssp -------------CCCTTCCEEECCSSCCSCCCCC--CTTCCE--------------------EECCSSCCSSCCCC---
T ss_pred -------------ccCCCCcEEECCCCCCCCCCCc--cchhhE--------------------EECcCCcccccCCC---
Confidence 3467888888888888777653 234444 44444444444421
Q ss_pred hhcCCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccc
Q 043214 663 QMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLK 742 (793)
Q Consensus 663 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 742 (793)
+++|+.|++++|.. +.+| ..+++|+.|++++|. ++.++. .+++|+.|++++ ++++.++ ..
T Consensus 220 -~~~L~~L~Ls~N~L-~~lp-----~~l~~L~~L~Ls~N~-L~~lp~--------~~~~L~~L~Ls~-N~L~~lp---~~ 279 (622)
T 3g06_A 220 -PSGLKELIVSGNRL-TSLP-----VLPSELKELMVSGNR-LTSLPM--------LPSGLLSLSVYR-NQLTRLP---ES 279 (622)
T ss_dssp -CTTCCEEECCSSCC-SCCC-----CCCTTCCEEECCSSC-CSCCCC--------CCTTCCEEECCS-SCCCSCC---GG
T ss_pred -CCCCCEEEccCCcc-CcCC-----CCCCcCcEEECCCCC-CCcCCc--------ccccCcEEeCCC-CCCCcCC---HH
Confidence 24555555555432 2222 234555555555542 222211 334555555555 3444442 22
Q ss_pred cccCCCCCeeeeccC
Q 043214 743 AESFCKLTTLKVKSC 757 (793)
Q Consensus 743 ~~~~~~L~~L~l~~C 757 (793)
...+++|+.|++++|
T Consensus 280 l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 280 LIHLSSETTVNLEGN 294 (622)
T ss_dssp GGGSCTTCEEECCSC
T ss_pred HhhccccCEEEecCC
Confidence 344555555555555
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.2e-18 Score=198.07 Aligned_cols=258 Identities=18% Similarity=0.095 Sum_probs=198.8
Q ss_pred CCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEec
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQ 524 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~ 524 (793)
.+++.|++.++.+. .+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.+..++. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcC--ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECc
Confidence 35788888888776 7777553 788999999998888887 57889999999988887433 77889999999
Q ss_pred CCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEE
Q 043214 525 GSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNL 604 (793)
Q Consensus 525 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 604 (793)
+|+++.+|. .+++|++|++++|.. ..+|.. +++|++|++++|.+... + ..+++|+.|
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l-~~lp~~----l~~L~~L~Ls~N~l~~l-~--------------~~~~~L~~L 166 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQL-TSLPVL----PPGLQELSVSDNQLASL-P--------------ALPSELCKL 166 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCC-SCCCCC----CTTCCEEECCSSCCSCC-C--------------CCCTTCCEE
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCC-CcCCCC----CCCCCEEECcCCcCCCc-C--------------CccCCCCEE
Confidence 988888887 678889999988765 456753 47888898888876431 1 124678888
Q ss_pred EEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccc
Q 043214 605 EIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYD 684 (793)
Q Consensus 605 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~ 684 (793)
++++|.+..+|. .+++|+.|++++|....+|.. +++|+.|.+++|... .++
T Consensus 167 ~L~~N~l~~l~~----------------------~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~-~l~-- 217 (622)
T 3g06_A 167 WAYNNQLTSLPM----------------------LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLT-SLP-- 217 (622)
T ss_dssp ECCSSCCSCCCC----------------------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS-SCC--
T ss_pred ECCCCCCCCCcc----------------------cCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCccc-ccC--
Confidence 888888877662 256777888888777777753 489999999998643 444
Q ss_pred cccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCccc
Q 043214 685 LDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIF 764 (793)
Q Consensus 685 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 764 (793)
..+++|+.|++++|. ++.++ ..+++|+.|++++ ++++.++. .+++|+.|++++| +++.+|
T Consensus 218 ---~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~-N~L~~lp~------~~~~L~~L~Ls~N-~L~~lp 277 (622)
T 3g06_A 218 ---ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSG-NRLTSLPM------LPSGLLSLSVYRN-QLTRLP 277 (622)
T ss_dssp ---CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCS-SCCSCCCC------CCTTCCEEECCSS-CCCSCC
T ss_pred ---CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCC-CCCCcCCc------ccccCcEEeCCCC-CCCcCC
Confidence 345899999999984 44332 4668999999999 57887742 5799999999999 788887
Q ss_pred chHHhcCCCCCcEEEeccccch
Q 043214 765 SFSVARSLPQLQTIEVIACKNM 786 (793)
Q Consensus 765 ~~~~~~~l~~L~~L~i~~C~~l 786 (793)
+ .+.++++|+.|++++|+--
T Consensus 278 ~--~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 278 E--SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp G--GGGGSCTTCEEECCSCCCC
T ss_pred H--HHhhccccCEEEecCCCCC
Confidence 5 4688999999999998643
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=196.77 Aligned_cols=242 Identities=19% Similarity=0.239 Sum_probs=176.5
Q ss_pred CCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCC
Q 043214 425 CPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDY 503 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 503 (793)
.+.++..+..+..+|... .++++.|++.++.+. .++...|..+++|++|++++|.+..++ ..+.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCC--EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCC--eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 446666777777777654 378888888888776 666666788899999999998888654 6788888999999998
Q ss_pred cccCC-C-cccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceee
Q 043214 504 GVFGD-V-SIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEI 580 (793)
Q Consensus 504 ~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 580 (793)
|.+.. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..+|...+..+++|++|++++|.+.. +
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 88877 3 458888899999999888887765 577888999999988887788887768888899999988887642 1
Q ss_pred cccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhH
Q 043214 581 EGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDV 660 (793)
Q Consensus 581 ~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~ 660 (793)
..+..+++|+.|++++|.+..++... +..+++|+.|++.++....++...
T Consensus 201 ------------~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------~~~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 201 ------------PNLTPLIKLDELDLSGNHLSAIRPGS------------------FQGLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp ------------CCCTTCSSCCEEECTTSCCCEECTTT------------------TTTCTTCCEEECTTCCCCEECTTS
T ss_pred ------------cccCCCcccCEEECCCCccCccChhh------------------hccCccCCEEECCCCceeEEChhh
Confidence 24677888888888888877664332 223556666666666665555544
Q ss_pred HHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCC
Q 043214 661 FMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 661 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
+..+++|+.|+|++|......+..+ ..+++|+.|+|++|+
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHDLF--TPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTTTT--SSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCCCCccChhHh--ccccCCCEEEcCCCC
Confidence 4456777777777765443333333 566777777777665
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=5.4e-19 Score=195.83 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=178.7
Q ss_pred CCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCC
Q 043214 425 CPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDY 503 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 503 (793)
...++..+..+..+|... .++++.|+++++.+. .+++..|..+++|++|++++|.+..++ ..+.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCc--eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666667777777644 468899999888776 566666788999999999999888554 6788899999999999
Q ss_pred cccCC-C-cccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceee
Q 043214 504 GVFGD-V-SIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEI 580 (793)
Q Consensus 504 ~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 580 (793)
|.+.. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..+|...+..+++|++|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 98877 3 458889999999999998887776 5788899999999988888888877788889999999988876422
Q ss_pred cccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhH
Q 043214 581 EGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDV 660 (793)
Q Consensus 581 ~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~ 660 (793)
..+..+++|+.|++++|.+..++... +..+++|+.|+++++....++...
T Consensus 212 ------------~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------~~~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 212 ------------PNLTPLVGLEELEMSGNHFPEIRPGS------------------FHGLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp ------------CCCTTCTTCCEEECTTSCCSEECGGG------------------GTTCTTCCEEECTTSCCCEECTTT
T ss_pred ------------ccccccccccEEECcCCcCcccCccc------------------ccCccCCCEEEeCCCcCceECHHH
Confidence 24677888889999888887664432 223556666666666666555444
Q ss_pred HHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCC
Q 043214 661 FMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 661 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
+..+++|+.|+|++|......+..+ ..+++|+.|+|++|+
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPHDLF--TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTSS--TTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCCccChHHh--ccccCCCEEEccCCC
Confidence 4456777777777775443222333 567777777777765
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=7e-20 Score=192.71 Aligned_cols=268 Identities=17% Similarity=0.122 Sum_probs=172.7
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEE
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILS 522 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~ 522 (793)
.+++|+.|+++++.+. .+++..|..+++|++|++++|.+...++ +..+++|++|++++|.+... ...++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred cCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEE
Confidence 4557777777777665 5555556777777777777777765544 67777777777777766542 2336777777
Q ss_pred ecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHh-cCCCCC
Q 043214 523 FQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHEL-KQLSYL 601 (793)
Q Consensus 523 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L 601 (793)
+++|.+..+|. ..+++|++|++++|.... +++..++.+++|++|++++|.+....+ ..+ ..+++|
T Consensus 106 l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~l~~L 171 (317)
T 3o53_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNF-----------AELAASSDTL 171 (317)
T ss_dssp CCSSCCSEEEE--CCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEG-----------GGGGGGTTTC
T ss_pred CCCCccCCcCc--cccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccH-----------HHHhhccCcC
Confidence 77777776654 236777777777766544 333336677777777777776654332 233 356777
Q ss_pred cEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCcccc
Q 043214 602 TNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNI 681 (793)
Q Consensus 602 ~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~ 681 (793)
+.|++++|.+..++... .+++|+.|+++++....+|+.+. .+++|+.|++++|... .+
T Consensus 172 ~~L~L~~N~l~~~~~~~--------------------~l~~L~~L~Ls~N~l~~l~~~~~-~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQV--------------------VFAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp CEEECTTSCCCEEECCC--------------------CCTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCC-EE
T ss_pred CEEECCCCcCccccccc--------------------ccccCCEEECCCCcCCcchhhhc-ccCcccEEECcCCccc-ch
Confidence 77777777666554332 25677777777777777777644 4688999999888544 56
Q ss_pred ccccccCCCCCCCceEeecCCCc-ceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCC
Q 043214 682 VYDLDREGFPKLKHPQIQNNPYF-LYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKL 760 (793)
Q Consensus 682 ~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L 760 (793)
|..+ ..+++|+.|++++|+.. ..++ .....+++|+.|++.+++.++.. .......+.+....-.+|..+
T Consensus 230 ~~~~--~~l~~L~~L~l~~N~~~~~~~~-----~~~~~~~~L~~l~l~~~~~l~~~---~~~~~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 230 EKAL--RFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVKKLTGQ---NEEECTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp CTTC--CCCTTCCEEECTTCCCBHHHHH-----HHHHTCHHHHHHHHHHHHHHHSS---SSCCCSSTTCEEETTEEEBCC
T ss_pred hhHh--hcCCCCCEEEccCCCccCcCHH-----HHHhccccceEEECCCchhccCC---chhccCCCceecccceeeccC
Confidence 6655 67888999999888643 1111 12346778888888877766654 222233344444444456655
Q ss_pred Cc
Q 043214 761 SF 762 (793)
Q Consensus 761 ~~ 762 (793)
..
T Consensus 300 ~~ 301 (317)
T 3o53_A 300 PA 301 (317)
T ss_dssp TT
T ss_pred Ch
Confidence 43
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3.9e-18 Score=188.92 Aligned_cols=241 Identities=17% Similarity=0.217 Sum_probs=191.4
Q ss_pred ccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEe
Q 043214 447 LKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSF 523 (793)
Q Consensus 447 L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l 523 (793)
.+.+...+..+. .+|..+ .++|++|++++|.+..+ |..+.++++|++|+|++|.+.. +..+.++++|++|++
T Consensus 56 ~~~v~c~~~~l~--~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS--EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS--SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC--ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 456666666555 777654 37899999999999965 6789999999999999999887 578999999999999
Q ss_pred cCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 524 QGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 524 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
++|.++.+|.. +..+++|++|++++|.. ..+|...+..+++|++|++++|.....++. ..+..+++|+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------~~~~~l~~L~ 199 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISE----------GAFEGLFNLK 199 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECT----------TTTTTCTTCC
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccCh----------hhccCCCCCC
Confidence 99999988875 88899999999999876 567776689999999999998665444431 3578899999
Q ss_pred EEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccc
Q 043214 603 NLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIV 682 (793)
Q Consensus 603 ~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~ 682 (793)
.|++++|.+..+|.. ..+++|+.|+++++....+++..+..+++|+.|.+++|......+
T Consensus 200 ~L~L~~n~l~~~~~~--------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 200 YLNLGMCNIKDMPNL--------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp EEECTTSCCSSCCCC--------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred EEECCCCcccccccc--------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 999999988877642 346778888888888777765555567999999999987765555
Q ss_pred cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccc
Q 043214 683 YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNL 730 (793)
Q Consensus 683 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 730 (793)
..+ ..+++|+.|+|++|. +..++.. ....+++|+.|+|+++
T Consensus 260 ~~~--~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 260 NAF--DGLASLVELNLAHNN-LSSLPHD----LFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTT--TTCTTCCEEECCSSC-CSCCCTT----SSTTCTTCCEEECCSS
T ss_pred HHh--cCCCCCCEEECCCCc-CCccChH----HhccccCCCEEEccCC
Confidence 555 788999999999884 4444322 3456789999999874
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=3.3e-20 Score=206.64 Aligned_cols=348 Identities=16% Similarity=0.127 Sum_probs=208.9
Q ss_pred hhccCCeEEecCCCcc-----ccccc-CCCCCccEEEccccCccccccChhhhcCCC----cceEEEecCCcCC-----C
Q 043214 421 ALKRCPAISLHNCKID-----ELLEG-LECPQLKLLHMATEDLSVQQIPNNFFIGMT----ELRVLDFVAMHLP-----S 485 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~-----~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~Lr~L~l~~~~~~-----~ 485 (793)
..++++++++++|.+. .++.. ..+++|+.|+++++.+.. ..+..++..++ +|++|++++|.+. .
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh-HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4567888888888875 23333 267888888888876653 23334445555 6888999888877 3
Q ss_pred CChhhhcccCCcEEEcCCcccCC--Ccccc-----cCCcccEEEecCCCCcc-----cChhcccCCCCCEEecCCCcCcc
Q 043214 486 LPSSLCLLSNLQTLCLDYGVFGD--VSIIG-----ELKTLEILSFQGSNIEE-----FPREIGQLTRLRLLNLAYCNLLK 553 (793)
Q Consensus 486 lp~~i~~l~~L~~L~L~~~~~~~--~~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~ 553 (793)
+|..+..+++|++|++++|.+.. +..+. ..++|++|++++|.+.. ++..+..+++|++|++++|....
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 57778888889999998888654 33332 25678889998887773 45567778888999988887543
Q ss_pred ccChhh----hcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccC-----ccc--cccc
Q 043214 554 VIPSNV----LSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLP-----KGL--LSKK 622 (793)
Q Consensus 554 ~~p~~~----i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~-----~~~--~~~~ 622 (793)
..+..+ ....++|++|++++|.+.... .......+..+++|+.|++++|.+.... ..+ ..++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDN-------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHH-------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 322221 113668888888888664321 0112345677888888888888764421 221 2467
Q ss_pred ccEEEEEecCccC--------cccccCCceEEEeecCCcccchh-hHHH----hhcCCcEEEeccccCccc----ccccc
Q 043214 623 LKRYKIFIGDEWN--------WSDQLQNSRILKLKLNNSTWLKD-DVFM----QMKGIEELYLDEMRGVKN----IVYDL 685 (793)
Q Consensus 623 L~~L~l~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~p~-~~~~----~l~~L~~L~L~~~~~~~~----~~~~~ 685 (793)
|+.|.+..+..-. ....+++|+.|+++++.....+. .+.. ..++|++|++++|..... ++..+
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 337 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH
Confidence 7777776654211 12346778888887765543222 1221 125788888877764433 23333
Q ss_pred ccCCCCCCCceEeecCCCccee-ccccCccCCccCcccceeecccccccc-----cccccccccccCCCCCeeeeccCCC
Q 043214 686 DREGFPKLKHPQIQNNPYFLYV-IDSVKHVPRDAFRALESLSLSNLINLE-----KICHGKLKAESFCKLTTLKVKSCDK 759 (793)
Q Consensus 686 ~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~L~~L~l~~C~~ 759 (793)
..+++|++|++++|. +... +......-....++|++|++++| .++ .+ +.....+++|++|++++| .
T Consensus 338 --~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l---~~~l~~~~~L~~L~l~~N-~ 409 (461)
T 1z7x_W 338 --AQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSL---AATLLANHSLRELDLSNN-C 409 (461)
T ss_dssp --HHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH---HHHHHHCCCCCEEECCSS-S
T ss_pred --hhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHH---HHHHHhCCCccEEECCCC-C
Confidence 456788888887773 2211 00000000012567888888774 454 23 222345778888888877 4
Q ss_pred CCcccchHHh----cCCCCCcEEEecccc
Q 043214 760 LSFIFSFSVA----RSLPQLQTIEVIACK 784 (793)
Q Consensus 760 L~~l~~~~~~----~~l~~L~~L~i~~C~ 784 (793)
++........ ...++|+.|++.++.
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 5443221111 123457777765543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=4.6e-18 Score=176.07 Aligned_cols=219 Identities=17% Similarity=0.212 Sum_probs=126.3
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYG 504 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 504 (793)
+.++..++.+..+|... .++++.|.+.++.+. .++...|..+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555555555432 456666666666555 45555556666666666666666644 556666666666666666
Q ss_pred c-cCC--CcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceee
Q 043214 505 V-FGD--VSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEI 580 (793)
Q Consensus 505 ~-~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 580 (793)
. +.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|... .+|+..++.+++|++|++++|.+....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 5 544 35566666666666666666655 334566666666666665543 344443566666666666666554322
Q ss_pred cccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhH
Q 043214 581 EGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDV 660 (793)
Q Consensus 581 ~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~ 660 (793)
+ ..+..+++|+.|++++|.+..++... +..+++|+.|+++++....+|...
T Consensus 170 ~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~------------------~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 170 E-----------RAFRGLHSLDRLLLHQNRVAHVHPHA------------------FRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp T-----------TTTTTCTTCCEEECCSSCCCEECTTT------------------TTTCTTCCEEECCSSCCSCCCHHH
T ss_pred H-----------HHhcCccccCEEECCCCcccccCHhH------------------ccCcccccEeeCCCCcCCcCCHHH
Confidence 2 23555666666666666655442211 123455555666655555555444
Q ss_pred HHhhcCCcEEEeccccC
Q 043214 661 FMQMKGIEELYLDEMRG 677 (793)
Q Consensus 661 ~~~l~~L~~L~L~~~~~ 677 (793)
...+++|+.|++++|..
T Consensus 221 ~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPW 237 (285)
T ss_dssp HTTCTTCCEEECCSSCE
T ss_pred cccCcccCEEeccCCCc
Confidence 44456666666666544
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=6e-18 Score=186.70 Aligned_cols=241 Identities=17% Similarity=0.227 Sum_probs=189.8
Q ss_pred ccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEe
Q 043214 447 LKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSF 523 (793)
Q Consensus 447 L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l 523 (793)
.+.+...+..+. .+|..+ .+++++|++++|.+..++ ..+.++++|++|+|++|.+.. +..+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~--~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR--EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS--SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC--cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 456666666555 788755 378999999999999654 789999999999999999887 578999999999999
Q ss_pred cCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 524 QGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 524 ~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
++|+++.+|. .+..+++|++|++++|.. ..+|...+..+++|++|++.+|.....++. ..+..+++|+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------~~~~~l~~L~ 188 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISE----------GAFEGLSNLR 188 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECT----------TTTTTCSSCC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCc----------chhhcccccC
Confidence 9999998887 488999999999999876 566766689999999999998665444431 3578899999
Q ss_pred EEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccc
Q 043214 603 NLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIV 682 (793)
Q Consensus 603 ~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~ 682 (793)
.|++++|.+..+|.. ..+++|+.|+++++....+++..+..+++|+.|.|++|......+
T Consensus 189 ~L~L~~n~l~~~~~~--------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 189 YLNLAMCNLREIPNL--------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp EEECTTSCCSSCCCC--------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred eecCCCCcCcccccc--------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 999999988877642 246677888888887777755555567999999999987665555
Q ss_pred cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccc
Q 043214 683 YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNL 730 (793)
Q Consensus 683 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 730 (793)
..+ ..+++|+.|+|++|. ++.++.. ....+++|+.|+|++.
T Consensus 249 ~~~--~~l~~L~~L~L~~N~-l~~~~~~----~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 249 NAF--DNLQSLVEINLAHNN-LTLLPHD----LFTPLHHLERIHLHHN 289 (440)
T ss_dssp TSS--TTCTTCCEEECTTSC-CCCCCTT----TTSSCTTCCEEECCSS
T ss_pred hhh--cCCCCCCEEECCCCC-CCccChh----HhccccCCCEEEcCCC
Confidence 555 788999999999884 3333221 3456789999999874
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=6.8e-18 Score=174.75 Aligned_cols=180 Identities=24% Similarity=0.351 Sum_probs=90.5
Q ss_pred hccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCc-CCCC-ChhhhcccCCc
Q 043214 422 LKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMH-LPSL-PSSLCLLSNLQ 497 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~~l-p~~i~~l~~L~ 497 (793)
+.++++++++++.+..++. +..+++|+.|++.++.+. .+++..|..+++|++|++++|. +..+ |..+..+++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 3455555555555544443 224555555555555443 3333334555555555555554 4443 44455555555
Q ss_pred EEEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 498 TLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 498 ~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
+|++++|.+.. +..+.++++|++|++++|.+..+|.. ++.+++|++|++++|.. ..+|+..+..+++|++|++++|
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccCEEECCCC
Confidence 55555555544 23455555555555555555544433 45555555555555433 2334333455555555555555
Q ss_pred ccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccC
Q 043214 575 FVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLP 615 (793)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~ 615 (793)
.+....+ ..+..+++|+.|++++|.+..++
T Consensus 188 ~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 188 RVAHVHP-----------HAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CCCEECT-----------TTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccCH-----------hHccCcccccEeeCCCCcCCcCC
Confidence 5433322 23445555555555555554444
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=3.5e-18 Score=178.94 Aligned_cols=218 Identities=18% Similarity=0.165 Sum_probs=150.3
Q ss_pred cEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChh-hhcccCCcEEEcCCcccCC----CcccccCCcccEEE
Q 043214 448 KLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSS-LCLLSNLQTLCLDYGVFGD----VSIIGELKTLEILS 522 (793)
Q Consensus 448 ~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~~~~----~~~i~~l~~L~~L~ 522 (793)
+.+.+.+.... .+|..+ .++|++|++++|.+..+|.. +.++++|++|++++|.+.. +..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~--~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT--SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS--SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcc--cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 35666665554 677644 36899999999999988865 6889999999999998764 35667789999999
Q ss_pred ecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 523 FQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 523 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
+++|.+..+|..+..+++|++|++++|......+...+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~ 153 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----------GIFNGLSSLE 153 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-----------TTTTTCTTCC
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-----------hhcccCcCCC
Confidence 99999998988899999999999998876443332347889999999999887754433 3567788888
Q ss_pred EEEEEeccCCc--cCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccc
Q 043214 603 NLEIQIQDANV--LPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKN 680 (793)
Q Consensus 603 ~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~ 680 (793)
.|++++|.+.. +|.. ...+++|+.|+++++....+++.....+++|+.|++++|.....
T Consensus 154 ~L~l~~n~l~~~~~~~~-------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDI-------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp EEECTTCEEGGGEECSC-------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred EEECCCCccccccchhH-------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 88888776643 2322 22345566666666555555332223356666666666654332
Q ss_pred cccccccCCCCCCCceEeecCC
Q 043214 681 IVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 681 ~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
.+..+ ..+++|+.|++++|.
T Consensus 215 ~~~~~--~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 215 DTFPY--KCLNSLQVLDYSLNH 234 (306)
T ss_dssp CSGGG--TTCTTCCEEECTTSC
T ss_pred Chhhc--cCcccCCEeECCCCC
Confidence 22233 456666666666654
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=5.5e-20 Score=204.79 Aligned_cols=348 Identities=16% Similarity=0.066 Sum_probs=235.6
Q ss_pred hccCCeEEecCCCccccc--c-cCCCCCccEEEccccCcccc---ccChhhhcCCCcceEEEecCCcCCC-CChhh-hcc
Q 043214 422 LKRCPAISLHNCKIDELL--E-GLECPQLKLLHMATEDLSVQ---QIPNNFFIGMTELRVLDFVAMHLPS-LPSSL-CLL 493 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~i-~~l 493 (793)
+.++++++++++.+...+ . ...+++|+.|.+.++.+... .++ ..+..+++|++|++++|.+.. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 356788999998884433 2 23688999999999876521 223 345788999999999998763 22223 335
Q ss_pred c----CCcEEEcCCcccCC------CcccccCCcccEEEecCCCCccc-Chhcc-----cCCCCCEEecCCCcCccc---
Q 043214 494 S----NLQTLCLDYGVFGD------VSIIGELKTLEILSFQGSNIEEF-PREIG-----QLTRLRLLNLAYCNLLKV--- 554 (793)
Q Consensus 494 ~----~L~~L~L~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~l-p~~i~-----~L~~L~~L~l~~~~~~~~--- 554 (793)
. +|++|++++|.+.. +..+..+++|++|++++|.+... +..+. ..++|++|++++|.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 5 69999999998773 57788999999999999988732 22222 356899999999976543
Q ss_pred -cChhhhcCCCCcceeeccccccceeecccccccCcccHHHhc-CCCCCcEEEEEeccCCcc-----Cccc-ccccccEE
Q 043214 555 -IPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELK-QLSYLTNLEIQIQDANVL-----PKGL-LSKKLKRY 626 (793)
Q Consensus 555 -~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~~L~i~~~~~~~~-----~~~~-~~~~L~~L 626 (793)
++.. +..+++|++|++++|.+..... ......+. .+++|+.|++++|.+... +..+ ..++|+.|
T Consensus 161 ~l~~~-l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 161 PLASV-LRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp HHHHH-HHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHH-HhhCCCCCEEECcCCCcchHHH-------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 3433 6778999999999987643211 01112222 467999999999988653 3332 34889999
Q ss_pred EEEecCccC---------cccccCCceEEEeecCCccc-----chhhHHHhhcCCcEEEeccccCccccccccc---cCC
Q 043214 627 KIFIGDEWN---------WSDQLQNSRILKLKLNNSTW-----LKDDVFMQMKGIEELYLDEMRGVKNIVYDLD---REG 689 (793)
Q Consensus 627 ~l~~~~~~~---------~~~~~~~L~~L~l~~~~~~~-----~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~---~~~ 689 (793)
.++.+..-. +...+++|+.|+++++.... ++..+.. +++|++|++++|......+..+. ...
T Consensus 233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEP 311 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccC
Confidence 998765211 12357899999999987765 4555443 68999999999865433222221 123
Q ss_pred CCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccc---cccCCCCCeeeeccCCCCCc----
Q 043214 690 FPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLK---AESFCKLTTLKVKSCDKLSF---- 762 (793)
Q Consensus 690 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~~L~~L~l~~C~~L~~---- 762 (793)
.++|+.|++++|...... ..........+++|+.|+++++ .+.......+. ....++|++|++++| ++++
T Consensus 312 ~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~ 388 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAAC-CSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCS 388 (461)
T ss_dssp TCCCCEEECTTSCCBGGG-HHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHH
T ss_pred CccceeeEcCCCCCchHH-HHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHH
Confidence 479999999999632110 0000012345689999999985 56553210110 112679999999999 5763
Q ss_pred -ccchHHhcCCCCCcEEEecccc
Q 043214 763 -IFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 763 -l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
+|. .+..+++|++|++++|+
T Consensus 389 ~l~~--~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 389 SLAA--TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHH--HHHHCCCCCEEECCSSS
T ss_pred HHHH--HHHhCCCccEEECCCCC
Confidence 332 45679999999999984
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=8.5e-19 Score=184.40 Aligned_cols=262 Identities=15% Similarity=0.151 Sum_probs=167.7
Q ss_pred EEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCCCcccccCCcccEEEecCCCC
Q 043214 450 LHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNI 528 (793)
Q Consensus 450 L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l 528 (793)
..+..+.+. ..+..++..+++|++|++++|.+..++ ..+..+++|++|++++|.+.....+..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLK--QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHH--HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEE
T ss_pred eeccccchh--hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcc
Confidence 334444333 555667778889999999999998765 68899999999999999988744489999999999999988
Q ss_pred cccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEe
Q 043214 529 EEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQI 608 (793)
Q Consensus 529 ~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~ 608 (793)
+.+|. .++|++|++++|.... ++. ..+++|++|++++|.+....+ ..+..+++|+.|++++
T Consensus 93 ~~l~~----~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 93 QELLV----GPSIETLHAANNNISR-VSC---SRGQGKKNIYLANNKITMLRD-----------LDEGCRSRVQYLDLKL 153 (317)
T ss_dssp EEEEE----CTTCCEEECCSSCCSE-EEE---CCCSSCEEEECCSSCCCSGGG-----------BCTGGGSSEEEEECTT
T ss_pred ccccC----CCCcCEEECCCCccCC-cCc---cccCCCCEEECCCCCCCCccc-----------hhhhccCCCCEEECCC
Confidence 87663 4899999999887644 443 347789999998887754322 2456677888888887
Q ss_pred ccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccC
Q 043214 609 QDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDRE 688 (793)
Q Consensus 609 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 688 (793)
|.+..++.... ...+++|+.|+++++....+|.... +++|+.|++++|... .++..+ .
T Consensus 154 N~l~~~~~~~~-----------------~~~l~~L~~L~L~~N~l~~~~~~~~--l~~L~~L~Ls~N~l~-~l~~~~--~ 211 (317)
T 3o53_A 154 NEIDTVNFAEL-----------------AASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEF--Q 211 (317)
T ss_dssp SCCCEEEGGGG-----------------GGGTTTCCEEECTTSCCCEEECCCC--CTTCCEEECCSSCCC-EECGGG--G
T ss_pred CCCCcccHHHH-----------------hhccCcCCEEECCCCcCcccccccc--cccCCEEECCCCcCC-cchhhh--c
Confidence 77765432211 1124555566666555555543322 466777777666443 333334 5
Q ss_pred CCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccc-cccccccccccCCCCCeeeeccCCCCCcc
Q 043214 689 GFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLE-KICHGKLKAESFCKLTTLKVKSCDKLSFI 763 (793)
Q Consensus 689 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~L~~L~l~~C~~L~~l 763 (793)
.+++|+.|++++|. ++.++.. ...+++|+.|+++++ .+. ... +.....+++|+.|++.+|+.++..
T Consensus 212 ~l~~L~~L~L~~N~-l~~l~~~-----~~~l~~L~~L~l~~N-~~~~~~~--~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 212 SAAGVTWISLRNNK-LVLIEKA-----LRFSQNLEHFDLRGN-GFHCGTL--RDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp GGTTCSEEECTTSC-CCEECTT-----CCCCTTCCEEECTTC-CCBHHHH--HHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccCcccEEECcCCc-ccchhhH-----hhcCCCCCEEEccCC-CccCcCH--HHHHhccccceEEECCCchhccCC
Confidence 56667777766663 3334321 234566666666663 333 111 122334566666666665555544
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.7e-18 Score=199.35 Aligned_cols=297 Identities=16% Similarity=0.070 Sum_probs=121.9
Q ss_pred cCCCcceEEEecCCcCC-----CCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEEecCCCC----cccChhccc
Q 043214 468 IGMTELRVLDFVAMHLP-----SLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNI----EEFPREIGQ 537 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l----~~lp~~i~~ 537 (793)
..++.|+.|+++++.+. .++..+.++++|++|++++|.+.. +..+.++++|+.|+++.+.. ...+..+..
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 34445555555544443 122233444455555555544444 33444444555555443211 122233444
Q ss_pred CCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCc--cC
Q 043214 538 LTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANV--LP 615 (793)
Q Consensus 538 L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~--~~ 615 (793)
+++|+.|.++++ ....+|.. +..+++|++|++++|.+.... ....+..+++|+.|++. +.+.. ++
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~~----------~~~~~~~~~~L~~L~L~-~~~~~~~l~ 335 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETED----------HCTLIQKCPNLEVLETR-NVIGDRGLE 335 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHHH----------HHHHHTTCTTCCEEEEE-GGGHHHHHH
T ss_pred cccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHHH----------HHHHHHhCcCCCEEecc-CccCHHHHH
Confidence 444444444442 12233332 444555555555555432110 11223455555555555 21110 01
Q ss_pred cc-cccccccEEEEEe----------cCccC------cccccCCceEEEeecCCccc-chhhHHHhhcCCcEEEecc---
Q 043214 616 KG-LLSKKLKRYKIFI----------GDEWN------WSDQLQNSRILKLKLNNSTW-LKDDVFMQMKGIEELYLDE--- 674 (793)
Q Consensus 616 ~~-~~~~~L~~L~l~~----------~~~~~------~~~~~~~L~~L~l~~~~~~~-~p~~~~~~l~~L~~L~L~~--- 674 (793)
.. ..+++|++|.+.. +.... ....+++|+.|.+..+.... .+..+...+++|+.|.+.+
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 00 0134555555552 22111 12235556666654333221 2223333355666666653
Q ss_pred ccCccccc------cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCC
Q 043214 675 MRGVKNIV------YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCK 748 (793)
Q Consensus 675 ~~~~~~~~------~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 748 (793)
|..++..| ..+ ..+++|+.|+++.|... +.+.........+|+|+.|++++| .++.... +.....+++
T Consensus 416 ~n~l~~~p~~~~~~~~~--~~~~~L~~L~L~~~~~~--l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~~~~~ 489 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLL--IGCKKLRRFAFYLRQGG--LTDLGLSYIGQYSPNVRWMLLGYV-GESDEGL-MEFSRGCPN 489 (592)
T ss_dssp CSCCSSCCCHHHHHHHH--HHCTTCCEEEEECCGGG--CCHHHHHHHHHSCTTCCEEEECSC-CSSHHHH-HHHHTCCTT
T ss_pred CccccCchHHHHHHHHH--HhCCCCCEEEEecCCCC--ccHHHHHHHHHhCccceEeeccCC-CCCHHHH-HHHHhcCcc
Confidence 22222211 111 34566666666554320 000000001123455666666653 2332100 111234566
Q ss_pred CCeeeeccCCCCCcccchHHhcCCCCCcEEEecccc
Q 043214 749 LTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACK 784 (793)
Q Consensus 749 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 784 (793)
|++|+|++|+ +++......+..+++|+.|++++|.
T Consensus 490 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 490 LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 6666666664 4432222233456666666666665
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.3e-16 Score=164.19 Aligned_cols=175 Identities=22% Similarity=0.307 Sum_probs=119.5
Q ss_pred ecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC
Q 043214 430 LHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD 508 (793)
Q Consensus 430 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~ 508 (793)
..+..+..+|... .++++.|+++++.+. .++...|..+++|++|++++|.+..++ ..+..+++|++|++++|.+..
T Consensus 14 c~~~~l~~ip~~l-~~~l~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 14 CMELNFYKIPDNL-PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CTTSCCSSCCSSS-CTTCCEEECTTCCCC--EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCccccCCCC-CCCccEEECCCCccc--ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3344445555533 356788888777665 566555677888888888888777554 367778888888888887766
Q ss_pred --CcccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCcc-ccChhhhcCCCCcceeeccccccceeecccc
Q 043214 509 --VSIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLK-VIPSNVLSSLSRLEELYMGYTFVEWEIEGLN 584 (793)
Q Consensus 509 --~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 584 (793)
+..+.++++|++|++++|.+..++. .++.+++|++|++++|.... .+|.. ++.+++|++|++++|.+....+
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~--- 166 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC--- 166 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG---
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH---
Confidence 4567788888888888887776655 57788888888888876644 24554 7778888888888777654322
Q ss_pred cccCcccHHHhcCCCCCc-EEEEEeccCCccCc
Q 043214 585 NVRSKASLHELKQLSYLT-NLEIQIQDANVLPK 616 (793)
Q Consensus 585 ~~~~~~~l~~l~~l~~L~-~L~i~~~~~~~~~~ 616 (793)
..+..+..++.|. .|++++|.+..++.
T Consensus 167 -----~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 167 -----TDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp -----GGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred -----HHhhhhhhccccceeeecCCCcccccCc
Confidence 2344555555555 67777666665544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=3.8e-18 Score=178.99 Aligned_cols=243 Identities=15% Similarity=0.094 Sum_probs=140.4
Q ss_pred CCccEEEccccCccccccChhhhcCCCcceEEEecCCcCC--CCChhhh-------cccCCcEEEcCCcccCC--Cccc-
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLP--SLPSSLC-------LLSNLQTLCLDYGVFGD--VSII- 512 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~i~-------~l~~L~~L~L~~~~~~~--~~~i- 512 (793)
++|+.|.+.++.+ .+|..+... |+.|+++++.+. .+|..+. ++++|++|++++|.+.. |..+
T Consensus 43 ~~L~~l~l~~n~l---~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE---ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT---CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc---ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3455555555544 445544332 666677776664 3555554 56777777777777664 4544
Q ss_pred -ccCCcccEEEecCCCCcccChhcccC-----CCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccc
Q 043214 513 -GELKTLEILSFQGSNIEEFPREIGQL-----TRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNV 586 (793)
Q Consensus 513 -~~l~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 586 (793)
+.+++|++|++++|.+..+|..++.+ ++|++|++++|.... +++..++.+++|++|++++|.+.+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 190 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERG----- 190 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHH-----
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchH-----
Confidence 67777777777777777666666666 777777777766543 333336777777777777766432211
Q ss_pred cCcccHHHh--cCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhh
Q 043214 587 RSKASLHEL--KQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQM 664 (793)
Q Consensus 587 ~~~~~l~~l--~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l 664 (793)
....+ ..+++|+.|++++|.+..++ .++..+...+
T Consensus 191 ----~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------------------~~~~~~~~~l 227 (312)
T 1wwl_A 191 ----LISALCPLKFPTLQVLALRNAGMETPS---------------------------------------GVCSALAAAR 227 (312)
T ss_dssp ----HHHHSCTTSCTTCCEEECTTSCCCCHH---------------------------------------HHHHHHHHTT
T ss_pred ----HHHHHHhccCCCCCEEECCCCcCcchH---------------------------------------HHHHHHHhcC
Confidence 11222 45555555555554443211 2233344446
Q ss_pred cCCcEEEeccccCccccc-cccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccccccccccccccccc
Q 043214 665 KGIEELYLDEMRGVKNIV-YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKA 743 (793)
Q Consensus 665 ~~L~~L~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 743 (793)
++|+.|++++|......+ ..+ ..+++|+.|++++|. ++.+|.. .+++|+.|++++ +.++.++ . .
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~Ls~N~-l~~ip~~-------~~~~L~~L~Ls~-N~l~~~p---~-~ 292 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSC--DWPSQLNSLNLSFTG-LKQVPKG-------LPAKLSVLDLSY-NRLDRNP---S-P 292 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCC--CCCTTCCEEECTTSC-CSSCCSS-------CCSEEEEEECCS-SCCCSCC---C-T
T ss_pred CCCCEEECCCCcCCcccchhhh--hhcCCCCEEECCCCc-cChhhhh-------ccCCceEEECCC-CCCCCCh---h-H
Confidence 788888888776544332 222 446777777777764 2233221 126777777776 4566552 1 4
Q ss_pred ccCCCCCeeeeccC
Q 043214 744 ESFCKLTTLKVKSC 757 (793)
Q Consensus 744 ~~~~~L~~L~l~~C 757 (793)
..+++|+.|+++++
T Consensus 293 ~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 293 DELPQVGNLSLKGN 306 (312)
T ss_dssp TTSCEEEEEECTTC
T ss_pred hhCCCCCEEeccCC
Confidence 45677777777666
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.4e-17 Score=183.64 Aligned_cols=239 Identities=18% Similarity=0.138 Sum_probs=162.9
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEE
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILS 522 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~ 522 (793)
.+++|+.|+++++.+. .+++..|..+++|++|++++|.+...++ ++.+++|++|+|++|.+..++ ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCC--CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCC--CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEE
Confidence 3457777888777666 5655556788888888888887775554 777888888888888766522 237788888
Q ss_pred ecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhc-CCCCC
Q 043214 523 FQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELK-QLSYL 601 (793)
Q Consensus 523 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L 601 (793)
+++|.+..+|. ..+++|++|++++|......|.. ++.+++|++|++++|.+....+ ..+. .+++|
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-----------~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF-----------AELAASSDTL 171 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEG-----------GGGGGGTTTC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcCh-----------HHHhhhCCcc
Confidence 88888777655 35678888888887765544544 6778888888888887765444 2343 67788
Q ss_pred cEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCcccc
Q 043214 602 TNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNI 681 (793)
Q Consensus 602 ~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~ 681 (793)
+.|++++|.+..++... .+++|+.|+|+++....+|+.+. .+++|+.|+|++|... .+
T Consensus 172 ~~L~Ls~N~l~~~~~~~--------------------~l~~L~~L~Ls~N~l~~~~~~~~-~l~~L~~L~Ls~N~l~-~l 229 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQV--------------------VFAKLKTLDLSSNKLAFMGPEFQ-SAAGVTWISLRNNKLV-LI 229 (487)
T ss_dssp CEEECTTSCCCEEECCC--------------------CCTTCCEEECCSSCCCEECGGGG-GGTTCSEEECTTSCCC-EE
T ss_pred cEEecCCCccccccccc--------------------cCCCCCEEECCCCCCCCCCHhHc-CCCCccEEEecCCcCc-cc
Confidence 88888877776654332 25667777777777777776644 4688888888887654 46
Q ss_pred ccccccCCCCCCCceEeecCCCc-ceeccccCccCCccCcccceeecccc
Q 043214 682 VYDLDREGFPKLKHPQIQNNPYF-LYVIDSVKHVPRDAFRALESLSLSNL 730 (793)
Q Consensus 682 ~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~ 730 (793)
|..+ ..+++|+.|++++|+.. ..++. ....++.|+.|.+..+
T Consensus 230 p~~l--~~l~~L~~L~l~~N~l~c~~~~~-----~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 230 EKAL--RFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTV 272 (487)
T ss_dssp CTTC--CCCTTCCEEECTTCCBCHHHHHH-----HHTTCHHHHHHHHHHH
T ss_pred chhh--ccCCCCCEEEcCCCCCcCcchHH-----HHHhCCCCcEEecccc
Confidence 6555 67888888888887643 11111 2234566776666543
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=9.6e-18 Score=193.09 Aligned_cols=340 Identities=14% Similarity=0.082 Sum_probs=197.4
Q ss_pred hccCCeEEecCCCccc--ccccC-CCCCccEEEccccC-ccccccChhhhcCCCcceEEEecCCcCCC-----CChhhhc
Q 043214 422 LKRCPAISLHNCKIDE--LLEGL-ECPQLKLLHMATED-LSVQQIPNNFFIGMTELRVLDFVAMHLPS-----LPSSLCL 492 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-----lp~~i~~ 492 (793)
..+++++++.+|.+.. +.... .+++|+.|.+.+|. ... .....++..+++|++|++++|.+.. ++.....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4577888888776632 11111 47788888887763 221 2223344578888888888877552 2233335
Q ss_pred ccCCcEEEcCCcc--cCC--Cc-ccccCCcccEEEecCC-CCcccChhcccCCCCCEEecCCCcC---------------
Q 043214 493 LSNLQTLCLDYGV--FGD--VS-IIGELKTLEILSFQGS-NIEEFPREIGQLTRLRLLNLAYCNL--------------- 551 (793)
Q Consensus 493 l~~L~~L~L~~~~--~~~--~~-~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~--------------- 551 (793)
+++|++|++++|. +.. +. -+.++++|++|++++| .+..+|..+.++++|++|+++.|..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 6688888888776 211 11 2244688888888887 5566777777788888887654421
Q ss_pred ----cc-----------ccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCc--c
Q 043214 552 ----LK-----------VIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANV--L 614 (793)
Q Consensus 552 ----~~-----------~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~--~ 614 (793)
+. .+|.. +..+++|++|++++|.+... ....-+..+++|+.|++.++ +.. +
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~----------~l~~~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQSY----------DLVKLLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGG-HHHHTTCCEEECTTCCCCHH----------HHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred cCCCcccccCCcccchhhHHHH-HHhhCCCCEEEccCCCCCHH----------HHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence 00 11211 23456666666666653211 11123557788888888866 211 1
Q ss_pred Cccc-ccccccEEEEEecC--------ccC------cccccCCceEEEeecCCcccc-hhhHHHhhcCCcEEEec-----
Q 043214 615 PKGL-LSKKLKRYKIFIGD--------EWN------WSDQLQNSRILKLKLNNSTWL-KDDVFMQMKGIEELYLD----- 673 (793)
Q Consensus 615 ~~~~-~~~~L~~L~l~~~~--------~~~------~~~~~~~L~~L~l~~~~~~~~-p~~~~~~l~~L~~L~L~----- 673 (793)
+... .+++|+.|.+..+. ... ....+++|+.|.+..+..... +..+...+++|+.|.+.
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 1111 24778888875421 111 122467888886655444322 23344446888888888
Q ss_pred cccCccccc------cccccCCCCCCCceEeecCCCcceeccccCccCC-ccCcccceeecccccccccccccccccccC
Q 043214 674 EMRGVKNIV------YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPR-DAFRALESLSLSNLINLEKICHGKLKAESF 746 (793)
Q Consensus 674 ~~~~~~~~~------~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 746 (793)
+|..++..+ ..+ ..+++|+.|++++ .+... ..... ..+++|+.|++++|. ++.... ..-...+
T Consensus 411 ~~~~l~~~~~~~~~~~l~--~~~~~L~~L~L~~--~l~~~----~~~~l~~~~~~L~~L~L~~~~-i~~~~~-~~l~~~~ 480 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIV--EHCKDLRRLSLSG--LLTDK----VFEYIGTYAKKMEMLSVAFAG-DSDLGM-HHVLSGC 480 (594)
T ss_dssp CCCTTTCCCTHHHHHHHH--HHCTTCCEEECCS--SCCHH----HHHHHHHHCTTCCEEEEESCC-SSHHHH-HHHHHHC
T ss_pred CcccccCCchhhHHHHHH--hhCCCccEEeecC--cccHH----HHHHHHHhchhccEeeccCCC-CcHHHH-HHHHhcC
Confidence 444444221 112 5678888888865 22110 00011 137889999998864 433210 1111458
Q ss_pred CCCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccccc
Q 043214 747 CKLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACKN 785 (793)
Q Consensus 747 ~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 785 (793)
++|++|+|++|+. ++......+..+++|+.|++++|+.
T Consensus 481 ~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 481 DSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999999974 5443334556789999999999976
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=5.2e-18 Score=177.96 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=171.7
Q ss_pred hccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhh------cCCCcceEEEecCCcCC-CCChhh--hc
Q 043214 422 LKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFF------IGMTELRVLDFVAMHLP-SLPSSL--CL 492 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~Lr~L~l~~~~~~-~lp~~i--~~ 492 (793)
..+++.+.+.+|.+ .+|.... ..++.|++.++.+....++..+. ..+++|++|++++|.+. .+|..+ ..
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 45677888888887 5555331 12888888887774335666542 26899999999999998 678876 89
Q ss_pred ccCCcEEEcCCcccCC-CcccccC-----CcccEEEecCCCCcccC-hhcccCCCCCEEecCCCcCccc--cChhh-hcC
Q 043214 493 LSNLQTLCLDYGVFGD-VSIIGEL-----KTLEILSFQGSNIEEFP-REIGQLTRLRLLNLAYCNLLKV--IPSNV-LSS 562 (793)
Q Consensus 493 l~~L~~L~L~~~~~~~-~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~--~p~~~-i~~ 562 (793)
+++|++|++++|.+.. |..++.+ ++|++|++++|.+..+| ..++.+++|++|++++|...+. +|... ++.
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 9999999999999887 7777777 89999999999999776 6799999999999999986554 33331 278
Q ss_pred CCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCC
Q 043214 563 LSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQN 642 (793)
Q Consensus 563 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 642 (793)
+++|++|++++|.+..... ....-+..+++|+.|++++|.+...++... ...+++
T Consensus 200 l~~L~~L~L~~N~l~~~~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------------~~~l~~ 254 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSG--------VCSALAAARVQLQGLDLSHNSLRDAAGAPS-----------------CDWPSQ 254 (312)
T ss_dssp CTTCCEEECTTSCCCCHHH--------HHHHHHHTTCCCSEEECTTSCCCSSCCCSC-----------------CCCCTT
T ss_pred CCCCCEEECCCCcCcchHH--------HHHHHHhcCCCCCEEECCCCcCCcccchhh-----------------hhhcCC
Confidence 9999999999998752110 011234678999999999998876442110 112355
Q ss_pred ceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccccccCCCCCCCceEeecCC
Q 043214 643 SRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNP 702 (793)
Q Consensus 643 L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 702 (793)
|+.|+++++....+|.++. ++|++|++++|... ..|. + ..+++|+.|++++++
T Consensus 255 L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~-~~p~-~--~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD-RNPS-P--DELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCC-SCCC-T--TTSCEEEEEECTTCT
T ss_pred CCEEECCCCccChhhhhcc---CCceEEECCCCCCC-CChh-H--hhCCCCCEEeccCCC
Confidence 6666666665555555443 56666666665432 2232 3 455666666665553
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.2e-17 Score=183.83 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=186.3
Q ss_pred hhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 421 ALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
.+++++.|++++|.+..+++ +..+++|++|++++|.+. .+++ |..+++|++|++++|.+..+|. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--ETLD--LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE--EEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC--CCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 34589999999999987764 348999999999999876 3444 6899999999999999887664 389999
Q ss_pred EEcCCcccCCCcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 499 LCLDYGVFGDVSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 499 L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
|++++|.+...+. ..+++|++|++++|.+..+ |..++.+++|++|++++|......|....+.+++|++|++++|.+.
T Consensus 104 L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 104 LHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp EECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999999988222 3478999999999999976 5578999999999999998877777663448999999999999886
Q ss_pred eeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccch
Q 043214 578 WEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLK 657 (793)
Q Consensus 578 ~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p 657 (793)
... ....+++|+.|++++|.+..+|+.+ ..+++|+.|++++|....+|
T Consensus 183 ~~~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 183 DVK-------------GQVVFAKLKTLDLSSNKLAFMGPEF-------------------QSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp EEE-------------CCCCCTTCCEEECCSSCCCEECGGG-------------------GGGTTCSEEECTTSCCCEEC
T ss_pred ccc-------------ccccCCCCCEEECCCCCCCCCCHhH-------------------cCCCCccEEEecCCcCcccc
Confidence 542 2346899999999999998877653 23567777888887777777
Q ss_pred hhHHHhhcCCcEEEeccccCc-cccccccccCCCCCCCceEee
Q 043214 658 DDVFMQMKGIEELYLDEMRGV-KNIVYDLDREGFPKLKHPQIQ 699 (793)
Q Consensus 658 ~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~~~l~~L~~L~l~ 699 (793)
.++. .+++|+.|++++|... ...+..+ ..+++|+.|.+.
T Consensus 231 ~~l~-~l~~L~~L~l~~N~l~c~~~~~~~--~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KALR-FSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCC-CCTTCCEEECTTCCBCHHHHHHHH--TTCHHHHHHHHH
T ss_pred hhhc-cCCCCCEEEcCCCCCcCcchHHHH--HhCCCCcEEecc
Confidence 7654 3688899999888765 3444444 667777777765
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=5.6e-17 Score=186.58 Aligned_cols=342 Identities=13% Similarity=0.035 Sum_probs=233.4
Q ss_pred hhccCCeEEecCCCcccc-----ccc-CCCCCccEEEccccCcc---ccccChhhhcCCCcceEEEecCCcCCCCChhhh
Q 043214 421 ALKRCPAISLHNCKIDEL-----LEG-LECPQLKLLHMATEDLS---VQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLC 491 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l-----~~~-~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~ 491 (793)
..+++++|++.+|.+... +.. ..+++|+.|++.++.+. ...+ ..++..+++|+.|++++|.+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL-ETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH-HHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH-HHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 457899999999976332 122 26899999999888764 1122 2345789999999999999999999999
Q ss_pred cccCCcEEEcCCcccC----C-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCc
Q 043214 492 LLSNLQTLCLDYGVFG----D-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRL 566 (793)
Q Consensus 492 ~l~~L~~L~L~~~~~~----~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L 566 (793)
.+++|++|+++.+... . +..+..+++|+.|+++++....+|..+..+++|++|++++|......+...+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 9999999999864322 2 5678889999999999987778888889999999999999985443333446899999
Q ss_pred ceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEe-----------ccCCcc--Cc-ccccccccEEEEEecC
Q 043214 567 EELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQI-----------QDANVL--PK-GLLSKKLKRYKIFIGD 632 (793)
Q Consensus 567 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~-----------~~~~~~--~~-~~~~~~L~~L~l~~~~ 632 (793)
++|++..+..... ...-...+++|++|++.. +.+... +. ...+++|+.|.+....
T Consensus 321 ~~L~L~~~~~~~~-----------l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 321 EVLETRNVIGDRG-----------LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp CEEEEEGGGHHHH-----------HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred CEEeccCccCHHH-----------HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 9999983322111 112336788999999993 344321 11 1135899999995433
Q ss_pred ccC----cc-cccCCceEEEeec----CCcccchh-----hHHHhhcCCcEEEeccccC-cc-ccccccccCCCCCCCce
Q 043214 633 EWN----WS-DQLQNSRILKLKL----NNSTWLKD-----DVFMQMKGIEELYLDEMRG-VK-NIVYDLDREGFPKLKHP 696 (793)
Q Consensus 633 ~~~----~~-~~~~~L~~L~l~~----~~~~~~p~-----~~~~~l~~L~~L~L~~~~~-~~-~~~~~~~~~~l~~L~~L 696 (793)
.-. .. ..+++|+.|++.+ +.....|. .+...+++|+.|+++.|.+ +. ..+..+ ...+++|+.|
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L 468 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWM 468 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEe
Confidence 211 12 2478999999973 33333221 2234579999999987653 22 112222 2458999999
Q ss_pred EeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCc
Q 043214 697 QIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQ 776 (793)
Q Consensus 697 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~ 776 (793)
++++|..-... .......+++|++|+|++|+ ++.... +.....+++|++|++++|. ++..........+|.|.
T Consensus 469 ~L~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 469 LLGYVGESDEG----LMEFSRGCPNLQKLEMRGCC-FSERAI-AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN 541 (592)
T ss_dssp EECSCCSSHHH----HHHHHTCCTTCCEEEEESCC-CBHHHH-HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred eccCCCCCHHH----HHHHHhcCcccCeeeccCCC-CcHHHH-HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence 99988622100 00123467999999999986 543210 1123468999999999996 77654434556788887
Q ss_pred EEEecc
Q 043214 777 TIEVIA 782 (793)
Q Consensus 777 ~L~i~~ 782 (793)
...+..
T Consensus 542 ~~~~~~ 547 (592)
T 3ogk_B 542 IELIPS 547 (592)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 776654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=7.8e-16 Score=157.71 Aligned_cols=180 Identities=23% Similarity=0.391 Sum_probs=149.6
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChh-hhcccCCcEEEc
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSS-LCLLSNLQTLCL 501 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L 501 (793)
...+.++++++.+..+|... .++++.|++.++.+. .++...|..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35678999999888888754 378999999998877 67776778999999999999999988765 478999999999
Q ss_pred CCcccCC-C-cccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 502 DYGVFGD-V-SIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 502 ~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|+..++.+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcE
Confidence 9999888 3 4678899999999999999987654 68999999999999865 55676667899999999999987764
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcc
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKG 617 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~ 617 (793)
..+ ..+..+++|+.|++++|.+..++..
T Consensus 172 ~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 172 VPE-----------GAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCT-----------TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred eCh-----------hHhccCCCcCEEECCCCcCCcCCHH
Confidence 332 3577889999999999988877764
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.5e-16 Score=158.87 Aligned_cols=124 Identities=30% Similarity=0.450 Sum_probs=57.5
Q ss_pred ccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcccCC-Cc-ccccCCcccEEEe
Q 043214 447 LKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGVFGD-VS-IIGELKTLEILSF 523 (793)
Q Consensus 447 L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~-~~-~i~~l~~L~~L~l 523 (793)
.+++++.++.+. .+|..+ .+.|+.|++++|.+..+|. .+..+++|++|++++|.+.. ++ .+.++++|++|++
T Consensus 18 ~~~l~~~~~~l~--~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSSKKLT--AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTEEECTTSCCS--SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCEEEccCCCCC--ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 444555544443 344322 1345555555555554432 44555555555555555444 22 2344555555555
Q ss_pred cCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccccc
Q 043214 524 QGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFV 576 (793)
Q Consensus 524 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~ 576 (793)
++|.+..+|.. +..+++|++|++++|... .+|+..++.+++|++|++++|.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcC
Confidence 55555544432 344555555555554332 23333244455555555544443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5.5e-16 Score=160.27 Aligned_cols=183 Identities=21% Similarity=0.239 Sum_probs=154.8
Q ss_pred hhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEE
Q 043214 421 ALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLC 500 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 500 (793)
...+++.+++.++.+..+|... .++++.|+++++.+. .++...|..+++|++|++++|.+..+|.. +.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCS--EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCC--ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 3457888999999998888765 478999999999876 66666779999999999999999977764 7899999999
Q ss_pred cCCcccCC-CcccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 501 LDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 501 L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
+++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++|.. ..+|+..+..+++|++|++++|.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcCCc
Confidence 99999988 7778899999999999999998874 588999999999999876 46677767899999999999998764
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccc
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLL 619 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~ 619 (793)
..+ ..+..+++|+.|++++|.+..+|..++
T Consensus 163 l~~-----------~~~~~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 163 LPA-----------GLLNGLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp CCT-----------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCH-----------HHhcCcCCCCEEECCCCcCCccChhhc
Confidence 332 346788999999999999998887653
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=7.3e-16 Score=161.00 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=154.4
Q ss_pred hhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 419 KEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
.....+++++++.++.+..++....+++|+.|+++++.+. .+++ +..+++|++|++++|.+..+| .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~--~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT--DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC--CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 3456789999999999988887778999999999998776 5666 689999999999999998876 5889999999
Q ss_pred EEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 499 LCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 499 L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
|++++|.+..++.+..+++|++|++++|.+..+|. +..+++|++|++++|.. ..+++ +..+++|++|++++|.+..
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh--hcCCCCCCEEECCCCccCc
Confidence 99999998886669999999999999999998876 88999999999999866 44555 7899999999999887743
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEE
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIF 629 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~ 629 (793)
. ..+..+++|+.|++++|.+..++....+++|+.|.+.
T Consensus 188 ~-------------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 188 I-------------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225 (308)
T ss_dssp C-------------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred C-------------hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEcc
Confidence 2 2378889999999999988877643233444444443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=5.3e-16 Score=162.08 Aligned_cols=153 Identities=21% Similarity=0.268 Sum_probs=106.7
Q ss_pred cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccE
Q 043214 441 GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEI 520 (793)
Q Consensus 441 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~ 520 (793)
...+++|+.|.+.++.+. .++. +..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~--~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT--TIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCcc--Cchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCE
Confidence 335677778887777655 4543 4677778888888887777766 7777788888888777777667777777888
Q ss_pred EEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCC
Q 043214 521 LSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSY 600 (793)
Q Consensus 521 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 600 (793)
|++++|.++.+|. +..+++|++|++++|.. ..+++ ++.+++|++|++++|.+... ..+..+++
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~ 174 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQVSDL-------------TPLANLSK 174 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCC-------------GGGTTCTT
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCcCCCC-------------hhhcCCCC
Confidence 8887777777664 77777778887777655 33443 66777777777777765321 12666777
Q ss_pred CcEEEEEeccCCccC
Q 043214 601 LTNLEIQIQDANVLP 615 (793)
Q Consensus 601 L~~L~i~~~~~~~~~ 615 (793)
|+.|++++|.+..++
T Consensus 175 L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 175 LTTLKADDNKISDIS 189 (308)
T ss_dssp CCEEECCSSCCCCCG
T ss_pred CCEEECCCCccCcCh
Confidence 777777776665544
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=4e-16 Score=161.35 Aligned_cols=198 Identities=20% Similarity=0.276 Sum_probs=143.5
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCcccCCCcccccCCcccEE
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEIL 521 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L 521 (793)
.+++++.+.+.++.+. .+|..+ .+.+++|++++|.+..+ |..+..+++|++|++++|.+..++..+.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~--~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT--ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS--SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC--cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 4677888888887766 677654 36788899999988855 46788888999999998888874445788889999
Q ss_pred EecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCC
Q 043214 522 SFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYL 601 (793)
Q Consensus 522 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 601 (793)
++++|.+..+|..+..+++|++|++++|.. ..+|+..+..+++|++|++++|.+....+ ..+..+++|
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L 150 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPP-----------GLLTPTPKL 150 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCT-----------TTTTTCTTC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccCh-----------hhcccccCC
Confidence 999988888888888888999999988766 45555557888888888888887754333 245677888
Q ss_pred cEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEecccc
Q 043214 602 TNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 602 ~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 676 (793)
+.|++++|.+..+|...+ ..+++|+.|+++++....+|.+++. +++|+.|.|.+|.
T Consensus 151 ~~L~L~~N~l~~l~~~~~------------------~~l~~L~~L~L~~N~l~~ip~~~~~-~~~L~~l~L~~Np 206 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLL------------------NGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTSCCSCCCTTTT------------------TTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEECCSCC
T ss_pred CEEECCCCcCCccCHHHh------------------cCcCCCCEEECCCCcCCccChhhcc-cccCCeEEeCCCC
Confidence 888888887777665432 2245555556665555555555543 2456666665544
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=2.2e-16 Score=162.00 Aligned_cols=156 Identities=22% Similarity=0.345 Sum_probs=76.0
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-C-cccccCCcccE
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-V-SIIGELKTLEI 520 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~l~~L~~ 520 (793)
.+++|+.|.+.++... .++. +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. + ..++++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~--~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK--SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCC--CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcc--cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3444444444444332 2222 344555555555555555443 45555555555555555554 2 22455555555
Q ss_pred EEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCC
Q 043214 521 LSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLS 599 (793)
Q Consensus 521 L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 599 (793)
|++++|.+..+|.. ++.+++|++|++++|.. ..+|+..++.+++|++|++++|.+....+ ..++.++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~ 181 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPE-----------GVFDKLT 181 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCT
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCcCccCH-----------HHhcCCc
Confidence 55555555544443 45555555555555543 23343334555555555555554432211 1234455
Q ss_pred CCcEEEEEeccCCccC
Q 043214 600 YLTNLEIQIQDANVLP 615 (793)
Q Consensus 600 ~L~~L~i~~~~~~~~~ 615 (793)
+|+.|++++|.+..++
T Consensus 182 ~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVP 197 (272)
T ss_dssp TCCEEECCSSCCSCCC
T ss_pred cCCEEECCCCcCCccC
Confidence 5555555555544433
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=5.5e-16 Score=159.01 Aligned_cols=136 Identities=22% Similarity=0.334 Sum_probs=104.0
Q ss_pred cCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChh-cccCCCCCEEec
Q 043214 468 IGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNL 546 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 546 (793)
..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++.++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 56788888999888887766 4788888999999888888877888888899999988888877665 578888888888
Q ss_pred CCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCc
Q 043214 547 AYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPK 616 (793)
Q Consensus 547 ~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~ 616 (793)
++|... .+|+..++.+++|++|++++|.+....+ ..++.+++|+.|++++|.+..++.
T Consensus 117 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPK-----------GVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCC-ccCHHHhccCCCCCEEECCCCccCccCH-----------HHhccCccCCEEECCCCCcCccCH
Confidence 887764 4555547788888888888887653322 235677778888877776665544
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=3.4e-16 Score=157.34 Aligned_cols=138 Identities=18% Similarity=0.247 Sum_probs=76.8
Q ss_pred cccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCc-CCCCCh-hhhcccCCcEEEcCC-cccCC--C
Q 043214 435 IDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMH-LPSLPS-SLCLLSNLQTLCLDY-GVFGD--V 509 (793)
Q Consensus 435 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~~lp~-~i~~l~~L~~L~L~~-~~~~~--~ 509 (793)
+..+|. -.++++.|++.++.+. .+++..|..+++|++|++++|. ++.+|. .+..+++|++|++++ |.+.. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 444444 2335666666665554 4555455666666666666664 554443 455666666666665 55554 2
Q ss_pred cccccCCcccEEEecCCCCcccChhcccCCCCC---EEecCCCcCccccChhhhcCCCCcc-eeeccccccc
Q 043214 510 SIIGELKTLEILSFQGSNIEEFPREIGQLTRLR---LLNLAYCNLLKVIPSNVLSSLSRLE-ELYMGYTFVE 577 (793)
Q Consensus 510 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~~~~~p~~~i~~l~~L~-~L~l~~~~~~ 577 (793)
..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|+..+..+++|+ +|++++|.+.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 345566666666666666666654 55555555 6666665333445544455555555 5555555443
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.8e-15 Score=155.68 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=151.1
Q ss_pred hhccCCeEEecCCCcccccc--cCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCc
Q 043214 421 ALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQ 497 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~ 497 (793)
.+.+++++++++|.+..++. ...+++|+.|+++++.+. .++...|..+++|++|++++|.+..++ ..+..+++|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 45689999999999988775 348999999999999876 677777899999999999999998655 6789999999
Q ss_pred EEEcCCcccCC--CcccccCCcccEEEecCCCCcc--cChhcccCCCCCEEecCCCcCccccChhhhcCCCCcc----ee
Q 043214 498 TLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEE--FPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLE----EL 569 (793)
Q Consensus 498 ~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~----~L 569 (793)
+|++++|.+.. +..++.+++|++|++++|.+.. +|..+..+++|++|++++|.... ++...+..+++|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceee
Confidence 99999999888 3469999999999999999986 78899999999999999987644 4544466666666 89
Q ss_pred eccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc
Q 043214 570 YMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL 618 (793)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~ 618 (793)
++++|.+....+ ......+|+.|++++|.+..+|...
T Consensus 183 ~ls~n~l~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 183 DLSLNPMNFIQP------------GAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp ECCSSCCCEECT------------TSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred ecCCCcccccCc------------cccCCCcccEEECCCCceeecCHhH
Confidence 999998765433 2223347999999999998877653
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=8.2e-16 Score=154.48 Aligned_cols=192 Identities=13% Similarity=0.160 Sum_probs=160.6
Q ss_pred hhccCCeEEecCCCcccccc--cCCCCCccEEEccccC-ccccccChhhhcCCCcceEEEecC-CcCCCCC-hhhhcccC
Q 043214 421 ALKRCPAISLHNCKIDELLE--GLECPQLKLLHMATED-LSVQQIPNNFFIGMTELRVLDFVA-MHLPSLP-SSLCLLSN 495 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~Lr~L~l~~-~~~~~lp-~~i~~l~~ 495 (793)
.+.+++.+++++|.+..++. +..+++|+.|++.++. +. .+++..|.++++|++|++++ |.++.+| ..+..+++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 55689999999999988887 3489999999999996 66 78887789999999999998 8998776 56889999
Q ss_pred CcEEEcCCcccCCCcccccCCccc---EEEecCC-CCcccChh-cccCCCCC-EEecCCCcCccccChhhhcCCCCccee
Q 043214 496 LQTLCLDYGVFGDVSIIGELKTLE---ILSFQGS-NIEEFPRE-IGQLTRLR-LLNLAYCNLLKVIPSNVLSSLSRLEEL 569 (793)
Q Consensus 496 L~~L~L~~~~~~~~~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~~~~~p~~~i~~l~~L~~L 569 (793)
|++|++++|.+..++.++.+++|+ +|++++| .++.+|.. +..+++|+ +|++++|... .+|...+.. ++|++|
T Consensus 107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAV 184 (239)
T ss_dssp CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEE
T ss_pred CCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEE
Confidence 999999999998855588888888 9999999 99988875 88999999 9999998764 788774444 899999
Q ss_pred eccccc-cceeecccccccCcccHHHhcCC-CCCcEEEEEeccCCccCcccccccccEEEE
Q 043214 570 YMGYTF-VEWEIEGLNNVRSKASLHELKQL-SYLTNLEIQIQDANVLPKGLLSKKLKRYKI 628 (793)
Q Consensus 570 ~l~~~~-~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l 628 (793)
++.+|. +....+ ..+..+ ++|+.|++++|.+..+|.. .+++|+.|.+
T Consensus 185 ~L~~n~~l~~i~~-----------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 185 YLNKNKYLTVIDK-----------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp ECTTCTTCCEECT-----------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred EcCCCCCcccCCH-----------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 999995 653322 356778 8999999999999888876 4556666655
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.4e-16 Score=166.16 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=55.0
Q ss_pred chhhHHHhhcCCcEEEeccccCcc-ccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccc
Q 043214 656 LKDDVFMQMKGIEELYLDEMRGVK-NIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLE 734 (793)
Q Consensus 656 ~p~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 734 (793)
+|..+. .+++|+.|++++|..++ ..+..+ ..+++|+.|++++|..+. +.. ......+|+|+.|++++| +.
T Consensus 214 l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~~~~--~~~--~~~l~~~~~L~~L~l~~~--i~ 284 (336)
T 2ast_B 214 LSTLVR-RCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDII--PET--LLELGEIPTLKTLQVFGI--VP 284 (336)
T ss_dssp HHHHHH-HCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCC--GGG--GGGGGGCTTCCEEECTTS--SC
T ss_pred HHHHHh-hCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCCCCC--HHH--HHHHhcCCCCCEEeccCc--cC
Confidence 344333 36888888888887433 344444 677888888888886331 111 113456788888888886 32
Q ss_pred cccccccccccC-CCCCeeeeccCCCCCcccc
Q 043214 735 KICHGKLKAESF-CKLTTLKVKSCDKLSFIFS 765 (793)
Q Consensus 735 ~~~~~~~~~~~~-~~L~~L~l~~C~~L~~l~~ 765 (793)
.- . ...+ .+|+.|++++| +++...+
T Consensus 285 ~~---~--~~~l~~~l~~L~l~~n-~l~~~~~ 310 (336)
T 2ast_B 285 DG---T--LQLLKEALPHLQINCS-HFTTIAR 310 (336)
T ss_dssp TT---C--HHHHHHHSTTSEESCC-CSCCTTC
T ss_pred HH---H--HHHHHhhCcceEEecc-cCccccC
Confidence 21 1 1122 23556667544 6666544
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=4e-15 Score=158.60 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=49.2
Q ss_pred eEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-C-cccccCCcccEEEecCCCCc-ccChh-cccCCCCCEEecCCC
Q 043214 474 RVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-V-SIIGELKTLEILSFQGSNIE-EFPRE-IGQLTRLRLLNLAYC 549 (793)
Q Consensus 474 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~-~lp~~-i~~L~~L~~L~l~~~ 549 (793)
++++.+++.++.+|..+ ..++++|+|++|.++. + ..+.++++|++|++++|.+. .+|.. +.++++|.++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 44556666666666554 2455555555555555 2 23455555555555555442 33332 344555444333332
Q ss_pred cCccccChhhhcCCCCcceeecccccc
Q 043214 550 NLLKVIPSNVLSSLSRLEELYMGYTFV 576 (793)
Q Consensus 550 ~~~~~~p~~~i~~l~~L~~L~l~~~~~ 576 (793)
..+..+|++.+..+++|++|++.+|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred CcccccCchhhhhcccccccccccccc
Confidence 333444443344455555555444443
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=6.4e-15 Score=152.39 Aligned_cols=176 Identities=24% Similarity=0.296 Sum_probs=150.5
Q ss_pred hhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 419 KEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
.....+++.+++.+|.+..++....+++|+.|+++++.+. .+++ +..+++|++|++++|.+..+|. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT--DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC--CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 3467889999999999988887778999999999999876 5655 6899999999999999988765 899999999
Q ss_pred EEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 499 LCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 499 L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
|++++|.+..++.+..+++|++|++++|.++.+ ..+..+++|++|++++|... .+++ +..+++|++|++++|.+..
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc-cchh--hcCCCccCEEECCCCcCCC
Confidence 999999998888899999999999999999988 56899999999999998764 4554 7899999999999987742
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCc
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPK 616 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~ 616 (793)
+..+..+++|+.|++++|.+...|.
T Consensus 193 -------------l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 193 -------------LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -------------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred -------------ChhhccCCCCCEEECcCCcccCCcc
Confidence 1357889999999999988766543
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=3e-16 Score=180.53 Aligned_cols=357 Identities=16% Similarity=0.096 Sum_probs=215.5
Q ss_pred hhccCCeEEecCCCc-cccc---------------cc-CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCC-c
Q 043214 421 ALKRCPAISLHNCKI-DELL---------------EG-LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAM-H 482 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~-~~l~---------------~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~-~ 482 (793)
...+++.+++.++.. ..+. .. ..+++|+.|++.++.+.. ..+..+...+++|++|++++| .
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCC
Confidence 456789999988753 1111 01 157899999999887653 334444446899999999999 5
Q ss_pred CCC--CChhhhcccCCcEEEcCCcccCC--Ccccc----cCCcccEEEecCCC--Cc--ccChhcccCCCCCEEecCCCc
Q 043214 483 LPS--LPSSLCLLSNLQTLCLDYGVFGD--VSIIG----ELKTLEILSFQGSN--IE--EFPREIGQLTRLRLLNLAYCN 550 (793)
Q Consensus 483 ~~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i~----~l~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~ 550 (793)
+.. ++..+.++++|++|++++|.+.. +..+. .+++|++|++++|. +. .++.-+.++++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 543 56666689999999999998655 33333 67799999999986 32 333334568999999999996
Q ss_pred CccccChhhhcCCCCcceeeccccccc-------------------eeecccccccCcccHHHhcCCCCCcEEEEEeccC
Q 043214 551 LLKVIPSNVLSSLSRLEELYMGYTFVE-------------------WEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDA 611 (793)
Q Consensus 551 ~~~~~p~~~i~~l~~L~~L~l~~~~~~-------------------~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~ 611 (793)
....+|.. +..+++|++|++..+... ..+.++...........+..+++|++|+++++.+
T Consensus 223 ~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 223 PLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp CHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred cHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 66667665 789999999997655310 0000111111111111223566777777776664
Q ss_pred Ccc--Cccc-ccccccEEEEEecCccC----cccccCCceEEEeecC------Ccccc----hhhHHHhhcCCcEEEecc
Q 043214 612 NVL--PKGL-LSKKLKRYKIFIGDEWN----WSDQLQNSRILKLKLN------NSTWL----KDDVFMQMKGIEELYLDE 674 (793)
Q Consensus 612 ~~~--~~~~-~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~------~~~~~----p~~~~~~l~~L~~L~L~~ 674 (793)
... ...+ .+++|+.|.+..+.... ....+++|+.|++.++ ....+ ...+...+++|++|.+..
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 321 1101 34677777777652111 1224677788877431 11111 112233467788885544
Q ss_pred ccCccccccccccCCCCCCCceEee-----cCCCcceeccccC-ccCCccCcccceeecccccccccccccccccc-cCC
Q 043214 675 MRGVKNIVYDLDREGFPKLKHPQIQ-----NNPYFLYVIDSVK-HVPRDAFRALESLSLSNLINLEKICHGKLKAE-SFC 747 (793)
Q Consensus 675 ~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~ 747 (793)
+......+..+ ...+|+|+.|++. +|..+...+.... ......+++|+.|++++ ++.... ..... .++
T Consensus 382 ~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~--~~~l~~~~~ 456 (594)
T 2p1m_B 382 RQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV--FEYIGTYAK 456 (594)
T ss_dssp SCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH--HHHHHHHCT
T ss_pred CCcCHHHHHHH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH--HHHHHHhch
Confidence 33322222222 1347888888888 4555542211000 00134678899999865 443321 11112 478
Q ss_pred CCCeeeeccCCCCCcccchHHhcCCCCCcEEEeccccc
Q 043214 748 KLTTLKVKSCDKLSFIFSFSVARSLPQLQTIEVIACKN 785 (793)
Q Consensus 748 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 785 (793)
+|+.|++++|. +++.........+++|+.|++++|+.
T Consensus 457 ~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 457 KMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 99999999995 55543333346799999999999975
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=9e-15 Score=147.98 Aligned_cols=176 Identities=19% Similarity=0.326 Sum_probs=145.1
Q ss_pred ccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEc
Q 043214 423 KRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCL 501 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L 501 (793)
...++++++++.+..+|.... ++++.|++.++.+. .+++..|.++++|++|++++|.+..++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA--TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC--ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 356788899998888887654 78999999998877 666666789999999999999998665 45789999999999
Q ss_pred CCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 502 DYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 502 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
++|.+.. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|+..++.+++|++|++++|.+..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999888 35678999999999999999988876 57899999999999866 45666558899999999999998764
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCc
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANV 613 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~ 613 (793)
..+ ..+..+++|+.|++++|.+..
T Consensus 170 ~~~-----------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPH-----------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCT-----------TTTTTCTTCCEEECCSCCBCT
T ss_pred cCH-----------HHHhCCCCCCEEEeeCCceeC
Confidence 433 357788899999999887754
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=159.06 Aligned_cols=229 Identities=12% Similarity=0.097 Sum_probs=163.5
Q ss_pred CCCCccEEEccccCccccccChh-hhcCCCcceEEEecCCcCC-CCChhh--hcccCCcEEEcCCcccCC-C-----ccc
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNN-FFIGMTELRVLDFVAMHLP-SLPSSL--CLLSNLQTLCLDYGVFGD-V-----SII 512 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~-~lp~~i--~~l~~L~~L~L~~~~~~~-~-----~~i 512 (793)
....++.+.+.........+..- -+..+++|++|++++|.+. ..|..+ ..+++|++|++++|.+.. . ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 44556777776654432111110 0123566999999999887 566666 889999999999998876 2 334
Q ss_pred ccCCcccEEEecCCCCcccC-hhcccCCCCCEEecCCCcCccc--cC-hhhhcCCCCcceeeccccccceeecccccccC
Q 043214 513 GELKTLEILSFQGSNIEEFP-REIGQLTRLRLLNLAYCNLLKV--IP-SNVLSSLSRLEELYMGYTFVEWEIEGLNNVRS 588 (793)
Q Consensus 513 ~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~--~p-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 588 (793)
..+++|++|++++|.+..+| ..++.+++|++|++++|..... ++ ...++.+++|++|++++|.+.....
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------- 214 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------- 214 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-------
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-------
Confidence 57999999999999998665 5688999999999999876542 22 2224688999999999997742111
Q ss_pred cccHH-HhcCCCCCcEEEEEeccCCcc-CcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcC
Q 043214 589 KASLH-ELKQLSYLTNLEIQIQDANVL-PKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKG 666 (793)
Q Consensus 589 ~~~l~-~l~~l~~L~~L~i~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~ 666 (793)
... -++.+++|+.|++++|.+... |..+. ....+++|+.|+++++....+|.++. ++
T Consensus 215 --~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~----------------~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~ 273 (310)
T 4glp_A 215 --VCAALAAAGVQPHSLDLSHNSLRATVNPSAP----------------RCMWSSALNSLNLSFAGLEQVPKGLP---AK 273 (310)
T ss_dssp --HHHHHHHHTCCCSSEECTTSCCCCCCCSCCS----------------SCCCCTTCCCEECCSSCCCSCCSCCC---SC
T ss_pred --HHHHHHhcCCCCCEEECCCCCCCccchhhHH----------------hccCcCcCCEEECCCCCCCchhhhhc---CC
Confidence 112 247889999999999998766 44321 01123688888888888888887663 79
Q ss_pred CcEEEeccccCccccccccccCCCCCCCceEeecCCC
Q 043214 667 IEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPY 703 (793)
Q Consensus 667 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 703 (793)
|+.|+|++|... .++. + ..+++|+.|++++|+.
T Consensus 274 L~~L~Ls~N~l~-~~~~-~--~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 274 LRVLDLSSNRLN-RAPQ-P--DELPEVDNLTLDGNPF 306 (310)
T ss_dssp CSCEECCSCCCC-SCCC-T--TSCCCCSCEECSSTTT
T ss_pred CCEEECCCCcCC-CCch-h--hhCCCccEEECcCCCC
Confidence 999999998754 3332 3 6789999999999863
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1e-14 Score=150.92 Aligned_cols=181 Identities=22% Similarity=0.233 Sum_probs=145.9
Q ss_pred EEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccC
Q 043214 428 ISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFG 507 (793)
Q Consensus 428 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 507 (793)
+.+....+..+.....+++|+.|.+.++.+. .++. +..+++|++|++++|.+..++. +..+++|++|++++|.+.
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIK--SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred HHhcCCCcccccchhhcCcccEEEccCCCcc--cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC
Confidence 3444455555544557889999999998776 5654 5889999999999999998887 999999999999999999
Q ss_pred CCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeeccccccc
Q 043214 508 DVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVR 587 (793)
Q Consensus 508 ~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 587 (793)
.++.++.+++|++|++++|.+..+| .+..+++|++|++++|.... ++ . ++.+++|++|++++|.+...
T Consensus 104 ~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~N~l~~~-------- 171 (291)
T 1h6t_A 104 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-IT-V-LSRLTKLDTLSLEDNQISDI-------- 171 (291)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCCC--------
T ss_pred CChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-ch-h-hccCCCCCEEEccCCccccc--------
Confidence 9888999999999999999999875 68999999999999987644 44 3 88999999999999977532
Q ss_pred CcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEe
Q 043214 588 SKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFI 630 (793)
Q Consensus 588 ~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~ 630 (793)
..+..+++|+.|++++|.+..++....+++|+.|.+..
T Consensus 172 -----~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 172 -----VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp -----GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred -----hhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcC
Confidence 12788999999999999988776533334455554443
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2e-14 Score=163.19 Aligned_cols=176 Identities=24% Similarity=0.305 Sum_probs=152.5
Q ss_pred hhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 419 KEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
......++.|++.+|.+..++....+++|+.|+++++.+. .+++ +..+++|+.|+|++|.+..+| .+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~--~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT--DIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC--CCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC--CChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 4567789999999999998888779999999999999877 5665 689999999999999999877 6899999999
Q ss_pred EEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 499 LCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 499 L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
|+|++|.+..++.+..+++|+.|+|++|.+..+ ..+..+++|++|+|++|.... +++ +..+++|++|++++|.+..
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCC
Confidence 999999999988899999999999999999988 568999999999999987754 444 7899999999999997753
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCc
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPK 616 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~ 616 (793)
+..+..+++|+.|++++|.+...|.
T Consensus 190 -------------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 -------------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred -------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 1368889999999999888765543
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.9e-15 Score=158.98 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=36.6
Q ss_pred hcCCcEEEeccccCcccc-ccccccCCCCCCCceEeecCCCcceeccccCccCCccC-cccceeecccccccccc
Q 043214 664 MKGIEELYLDEMRGVKNI-VYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAF-RALESLSLSNLINLEKI 736 (793)
Q Consensus 664 l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~ 736 (793)
+++|++|++++|...... ...+ ..+++|+.|++++| + ++. ....+ .+|..|++++ +.++..
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~--i---~~~----~~~~l~~~l~~L~l~~-n~l~~~ 308 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI--V---PDG----TLQLLKEALPHLQINC-SHFTTI 308 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTS--S---CTT----CHHHHHHHSTTSEESC-CCSCCT
T ss_pred CCCCCEeeCCCCCCCCHHHHHHH--hcCCCCCEEeccCc--c---CHH----HHHHHHhhCcceEEec-ccCccc
Confidence 588888888888633221 1233 66889999999888 2 111 11122 2466677764 667665
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3e-14 Score=151.82 Aligned_cols=236 Identities=16% Similarity=0.152 Sum_probs=162.2
Q ss_pred cEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcccCC---CcccccCCcccE-EE
Q 043214 448 KLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGVFGD---VSIIGELKTLEI-LS 522 (793)
Q Consensus 448 ~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~---~~~i~~l~~L~~-L~ 522 (793)
+++...++.+. .+|.++ .++++.|+|++|.++.+|. .|.++++|++|+|++|.+.. +..+.++++|+. +.
T Consensus 12 ~~v~C~~~~Lt--~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC--SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC--ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56666666665 788765 3678999999999998885 57899999999999998755 245778888776 45
Q ss_pred ecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCC-CC
Q 043214 523 FQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQL-SY 600 (793)
Q Consensus 523 l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l-~~ 600 (793)
+.++++..+|. .+..+++|++|++++|.. ..+|+.......++..|++.++.....++. ..+..+ ..
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~----------~~f~~~~~~ 155 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIER----------NSFVGLSFE 155 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECT----------TSSTTSBSS
T ss_pred ccCCcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccc----------cchhhcchh
Confidence 55678888754 578899999999998765 445554345566677777765433222221 123333 35
Q ss_pred CcEEEEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeec-CCcccchhhHHHhhcCCcEEEeccccCcc
Q 043214 601 LTNLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKL-NNSTWLKDDVFMQMKGIEELYLDEMRGVK 679 (793)
Q Consensus 601 L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~-~~~~~~p~~~~~~l~~L~~L~L~~~~~~~ 679 (793)
++.|++++|.+..++...+ ...+|+.|.+.+ +....+|...+..+++|+.|++++|. ++
T Consensus 156 l~~L~L~~N~i~~i~~~~f-------------------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~ 215 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAF-------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IH 215 (350)
T ss_dssp CEEEECCSSCCCEECTTSS-------------------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CC
T ss_pred hhhhccccccccCCChhhc-------------------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cC
Confidence 7788888888877776542 123455666653 56667777666667888888888875 34
Q ss_pred ccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeeccc
Q 043214 680 NIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSN 729 (793)
Q Consensus 680 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 729 (793)
.+|. ..|.+|+.|.+.++..++.+| ....|++|+.+++.+
T Consensus 216 ~lp~----~~~~~L~~L~~l~~~~l~~lP------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 216 SLPS----YGLENLKKLRARSTYNLKKLP------TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCS----SSCTTCCEEECTTCTTCCCCC------CTTTCCSCCEEECSC
T ss_pred ccCh----hhhccchHhhhccCCCcCcCC------CchhCcChhhCcCCC
Confidence 4443 447788888887777776664 245678888888754
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=9.4e-16 Score=166.06 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=73.3
Q ss_pred cCCCcceEEEecCCcCCC-----CChhhhcccCCcEEEcCCcccCC-----Ccc-------cccCCcccEEEecCCCCcc
Q 043214 468 IGMTELRVLDFVAMHLPS-----LPSSLCLLSNLQTLCLDYGVFGD-----VSI-------IGELKTLEILSFQGSNIEE 530 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~-----~~~-------i~~l~~L~~L~l~~~~l~~ 530 (793)
..+++|++|++++|.+.. ++..+..+++|++|+|++|.+.. |.. +..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 556677777777776652 33345566677777776654332 222 2456666666666666654
Q ss_pred -----cChhcccCCCCCEEecCCCcCccccChh---hhcCC---------CCcceeeccccccceeecccccccCcccHH
Q 043214 531 -----FPREIGQLTRLRLLNLAYCNLLKVIPSN---VLSSL---------SRLEELYMGYTFVEWEIEGLNNVRSKASLH 593 (793)
Q Consensus 531 -----lp~~i~~L~~L~~L~l~~~~~~~~~p~~---~i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 593 (793)
+|..+..+++|++|++++|......+.. .+..+ ++|++|++++|.+.... ......
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~l~~ 181 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS-------MKEWAK 181 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG-------HHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH-------HHHHHH
Confidence 5556666666666666666543221111 02222 56666666665543110 001123
Q ss_pred HhcCCCCCcEEEEEeccCC
Q 043214 594 ELKQLSYLTNLEIQIQDAN 612 (793)
Q Consensus 594 ~l~~l~~L~~L~i~~~~~~ 612 (793)
.+..+++|+.|++++|.+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHCTTCCEEECCSSCCC
T ss_pred HHHhCCCcCEEECcCCCCC
Confidence 4555666666666555443
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=3.6e-15 Score=161.45 Aligned_cols=239 Identities=16% Similarity=0.096 Sum_probs=127.0
Q ss_pred hccCCeEEecCCCccc-----ccc-cCCCCCccEEEccccCcc--ccccChhh------hcCCCcceEEEecCCcCCC--
Q 043214 422 LKRCPAISLHNCKIDE-----LLE-GLECPQLKLLHMATEDLS--VQQIPNNF------FIGMTELRVLDFVAMHLPS-- 485 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~------~~~~~~Lr~L~l~~~~~~~-- 485 (793)
..++++|++++|.+.. ++. ...+++|+.|+++++... ...+|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3456677777766633 111 225667777777665322 01233332 3566777777777776664
Q ss_pred ---CChhhhcccCCcEEEcCCcccCC--Ccc----cccC---------CcccEEEecCCCCc--ccC---hhcccCCCCC
Q 043214 486 ---LPSSLCLLSNLQTLCLDYGVFGD--VSI----IGEL---------KTLEILSFQGSNIE--EFP---REIGQLTRLR 542 (793)
Q Consensus 486 ---lp~~i~~l~~L~~L~L~~~~~~~--~~~----i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~L~~L~ 542 (793)
+|..+..+++|++|+|++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 55666667777777777776543 222 2223 66777777776664 333 3455666777
Q ss_pred EEecCCCcCccc----cChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc
Q 043214 543 LLNLAYCNLLKV----IPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL 618 (793)
Q Consensus 543 ~L~l~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~ 618 (793)
+|++++|..... +.+..+..+++|++|++++|.+.... .......+..+++|+.|++++|.+.......
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------SSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------HHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 777776654311 11212556667777777666553110 0112235566666667666666554321100
Q ss_pred ccccccEEEEEecCccCcccccCCceEEEeecCCccc-----chhhHHHhhcCCcEEEeccccCcc
Q 043214 619 LSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTW-----LKDDVFMQMKGIEELYLDEMRGVK 679 (793)
Q Consensus 619 ~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~p~~~~~~l~~L~~L~L~~~~~~~ 679 (793)
....+ ....+++|+.|+++++.... +|..+...+++|+.|++++|....
T Consensus 264 l~~~l------------~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 264 VVDAF------------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHH------------HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHH------------hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 00000 00124556666666665555 565554445677777777665443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=150.01 Aligned_cols=228 Identities=14% Similarity=0.059 Sum_probs=138.3
Q ss_pred CCcceEEEecCCcCCC--CCh--hhhcccCCcEEEcCCcccCC--Cccc--ccCCcccEEEecCCCCcc-cC----hhcc
Q 043214 470 MTELRVLDFVAMHLPS--LPS--SLCLLSNLQTLCLDYGVFGD--VSII--GELKTLEILSFQGSNIEE-FP----REIG 536 (793)
Q Consensus 470 ~~~Lr~L~l~~~~~~~--lp~--~i~~l~~L~~L~L~~~~~~~--~~~i--~~l~~L~~L~l~~~~l~~-lp----~~i~ 536 (793)
...++.|.+.++.+.. +.. ....+.+|++|++++|.+.. |..+ +.+++|++|++++|.+.. .| ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3446677777766541 111 12235668888888887765 5555 778888888888887773 22 2345
Q ss_pred cCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCc
Q 043214 537 QLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPK 616 (793)
Q Consensus 537 ~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~ 616 (793)
.+++|++|++++|.... +|+..++.+++|++|++++|.+.+... ......++.+++|+.|++++|.+..++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERG-------LMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp BCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHH-------HHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred hccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchh-------hhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 67888888888877644 443347788888888888876532100 0000123567788888888887765443
Q ss_pred ccccccccEEEEEecCccCcccccCCceEEEeecCCcccc-hhhHHHh--hcCCcEEEeccccCccccccccccCCCCCC
Q 043214 617 GLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWL-KDDVFMQ--MKGIEELYLDEMRGVKNIVYDLDREGFPKL 693 (793)
Q Consensus 617 ~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 693 (793)
... .....+++|+.|+++++..... |..+... +++|++|++++|... .+|..+ +++|
T Consensus 215 ~~~---------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~----~~~L 274 (310)
T 4glp_A 215 VCA---------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL----PAKL 274 (310)
T ss_dssp HHH---------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC----CSCC
T ss_pred HHH---------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh----cCCC
Confidence 210 0012345666677776666554 4443322 268888888877654 555443 3788
Q ss_pred CceEeecCCCcceeccccCccCCccCcccceeeccccccc
Q 043214 694 KHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINL 733 (793)
Q Consensus 694 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 733 (793)
+.|++++|. ++.++ ....+++|+.|++++ +.+
T Consensus 275 ~~L~Ls~N~-l~~~~------~~~~l~~L~~L~L~~-N~l 306 (310)
T 4glp_A 275 RVLDLSSNR-LNRAP------QPDELPEVDNLTLDG-NPF 306 (310)
T ss_dssp SCEECCSCC-CCSCC------CTTSCCCCSCEECSS-TTT
T ss_pred CEEECCCCc-CCCCc------hhhhCCCccEEECcC-CCC
Confidence 888888775 22221 134668888888877 444
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=1.1e-14 Score=155.93 Aligned_cols=213 Identities=12% Similarity=0.095 Sum_probs=92.6
Q ss_pred cCCCcceEEEecCCcCCCCC-----hhhhccc-CCcEEEcCCcccCC--CcccccC-----CcccEEEecCCCCcccChh
Q 043214 468 IGMTELRVLDFVAMHLPSLP-----SSLCLLS-NLQTLCLDYGVFGD--VSIIGEL-----KTLEILSFQGSNIEEFPRE 534 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~~lp-----~~i~~l~-~L~~L~L~~~~~~~--~~~i~~l-----~~L~~L~l~~~~l~~lp~~ 534 (793)
...++|++|++++|.+...+ ..+..++ +|++|+|++|.+.. +..+..+ ++|++|++++|.+...+..
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 33344555555555554333 3344444 55555555555443 3333332 5555555555555433221
Q ss_pred -----cccC-CCCCEEecCCCcCccccChhhh----cC-CCCcceeeccccccceeecccccccCcccHHHhcCCC-CCc
Q 043214 535 -----IGQL-TRLRLLNLAYCNLLKVIPSNVL----SS-LSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLS-YLT 602 (793)
Q Consensus 535 -----i~~L-~~L~~L~l~~~~~~~~~p~~~i----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~ 602 (793)
+..+ ++|++|++++|.... .+...+ .. .++|++|++++|.+..... ......+..++ +|+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-------~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-------DELIQILAAIPANVN 170 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTSCTTCC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-------HHHHHHHhcCCcccc
Confidence 2223 455555555554322 222111 12 2355555555554432110 01112333333 555
Q ss_pred EEEEEeccCCccCcccccccccEEEEEecCccCccccc-CCceEEEeecCCccc-----chhhHHHhhcCCcEEEecccc
Q 043214 603 NLEIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQL-QNSRILKLKLNNSTW-----LKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 603 ~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~-----~p~~~~~~l~~L~~L~L~~~~ 676 (793)
.|++++|.+...+...... ..... ++|+.|+++++.... ++..+....++|++|+|++|.
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~--------------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAK--------------FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp EEECTTSCGGGSCHHHHHH--------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred EeeecCCCCchhhHHHHHH--------------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 5555555544332211000 00111 244445554444433 444444333567777777665
Q ss_pred Ccccccccc--ccCCCCCCCceEeecCC
Q 043214 677 GVKNIVYDL--DREGFPKLKHPQIQNNP 702 (793)
Q Consensus 677 ~~~~~~~~~--~~~~l~~L~~L~l~~~~ 702 (793)
.....+..+ ....+++|+.|++++|.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 433211110 11456777777777764
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=2.1e-14 Score=163.01 Aligned_cols=187 Identities=21% Similarity=0.225 Sum_probs=152.7
Q ss_pred cCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCC
Q 043214 424 RCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDY 503 (793)
Q Consensus 424 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 503 (793)
.+..+.+..+.+..+.....+++|+.|.+.++.+. .++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~--~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK--SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC--CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCC--CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 34444555555555555567899999999988876 5654 6889999999999999998887 99999999999999
Q ss_pred cccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeeccc
Q 043214 504 GVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGL 583 (793)
Q Consensus 504 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~ 583 (793)
|.+..++.+..+++|++|++++|.+..+| .+..+++|+.|++++|.... ++. ++.+++|+.|++++|.+...
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~--l~~l~~L~~L~Ls~N~l~~~---- 168 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITV--LSRLTKLDTLSLEDNQISDI---- 168 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG--GGSCTTCSEEECCSSCCCCC----
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-chh--hcccCCCCEEECcCCcCCCc----
Confidence 99999889999999999999999999875 58999999999999987644 443 89999999999999987532
Q ss_pred ccccCcccHHHhcCCCCCcEEEEEeccCCccCcccccccccEEEEEecC
Q 043214 584 NNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGD 632 (793)
Q Consensus 584 ~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~ 632 (793)
..+..+++|+.|++++|.+..++....+++|+.|.+..+.
T Consensus 169 ---------~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 169 ---------VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---------GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred ---------hhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 1278899999999999999887654455677777665443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=7.6e-14 Score=135.39 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=89.0
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC--CcccccCCcccE
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEI 520 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~ 520 (793)
.+++|+.|.+.++.+. .+|. +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~--~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT--DLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS--CCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc--ChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3556666666666554 4442 456666666666666555443 46666666666666666654 566666666666
Q ss_pred EEecCCCCcc-cChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCC
Q 043214 521 LSFQGSNIEE-FPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLS 599 (793)
Q Consensus 521 L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 599 (793)
|++++|.+.. .|..++.+++|++|++++|.....+|. ++.+++|++|++++|.+.. +..+..++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-------------~~~l~~l~ 181 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-------------YRGIEDFP 181 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-------------CTTGGGCS
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-------------hHHhccCC
Confidence 6666666653 455566666666666666654455552 5666666666666665432 11455566
Q ss_pred CCcEEEEEeccCC
Q 043214 600 YLTNLEIQIQDAN 612 (793)
Q Consensus 600 ~L~~L~i~~~~~~ 612 (793)
+|+.|++++|.+.
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 6666666665543
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=2e-13 Score=137.98 Aligned_cols=156 Identities=20% Similarity=0.316 Sum_probs=135.3
Q ss_pred hhccCCeEEecCCCccccccc--CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCc
Q 043214 421 ALKRCPAISLHNCKIDELLEG--LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQ 497 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~ 497 (793)
.+.+++.|++++|.+..++.. ..+++|+.|+++++.+. .+++..|..+++|++|++++|.+..+| ..+..+++|+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 457899999999999777653 48999999999999887 677777899999999999999999776 4578999999
Q ss_pred EEEcCCcccCC-C-cccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 498 TLCLDYGVFGD-V-SIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 498 ~L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
+|++++|.+.. + ..+..+++|++|++++|+++.+|. .++.+++|++|++++|... .+|+..+..+++|++|++.+|
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCC
Confidence 99999999988 4 347899999999999999998887 5889999999999998765 566555889999999999999
Q ss_pred cccee
Q 043214 575 FVEWE 579 (793)
Q Consensus 575 ~~~~~ 579 (793)
.+...
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 87543
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.3e-13 Score=135.25 Aligned_cols=151 Identities=21% Similarity=0.283 Sum_probs=124.8
Q ss_pred cCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcEEEcC
Q 043214 424 RCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLD 502 (793)
Q Consensus 424 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 502 (793)
..+.++.+++.+..+|... .++|+.|+++++.+. .+++..|..+++|++|++++|.+..+|. .+..+++|++|+|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4566888888888888755 488999999998877 5666667889999999999999988774 46889999999999
Q ss_pred CcccCC-C-cccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 503 YGVFGD-V-SIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 503 ~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
+|.+.. + ..+..+++|++|++++|+++.+|..+..+++|++|++++|.. ..+|+..+..+++|++|++.+|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999888 3 346889999999999999999999999999999999998765 45666657888999999998887654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=5.8e-14 Score=142.78 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=139.3
Q ss_pred hhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEE
Q 043214 421 ALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLC 500 (793)
Q Consensus 421 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~ 500 (793)
...++..+.+..+.+..++....+++|+.|.+.++.+. .++. +..+++|++|++++|.+..+|. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~--~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ--SLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC--CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc--cchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 34556666777777777776667889999999888766 5662 5789999999999999998887 88999999999
Q ss_pred cCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceee
Q 043214 501 LDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEI 580 (793)
Q Consensus 501 L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~ 580 (793)
+++|.+..++.+.. ++|++|++++|.++.+| .+..+++|++|++++|.. ..+|. ++.+++|++|++++|.+...
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCBC-
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcch-
Confidence 99999888555555 89999999999998876 588999999999999876 44553 78899999999998877532
Q ss_pred cccccccCcccHHHhcCCCCCcEEEEEeccCCccCc
Q 043214 581 EGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPK 616 (793)
Q Consensus 581 ~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~ 616 (793)
..+..+++|+.|++++|.+...|.
T Consensus 166 ------------~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 ------------GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ------------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ------------HHhccCCCCCEEeCCCCcccCCcc
Confidence 357788999999999888766553
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.1e-13 Score=134.25 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=130.2
Q ss_pred hhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCC-CChhhhcccCCc
Q 043214 419 KEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPS-LPSSLCLLSNLQ 497 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~i~~l~~L~ 497 (793)
.....+++++++++|.+..++....+++|+.|.+.++... .++ .+..+++|++|++++|.+.. .|..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3567889999999999998887679999999999998554 343 36889999999999999984 688899999999
Q ss_pred EEEcCCcccCC--CcccccCCcccEEEecCCC-CcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 498 TLCLDYGVFGD--VSIIGELKTLEILSFQGSN-IEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 498 ~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
+|++++|.+.. +..++.+++|++|++++|. +..+| .+..+++|++|++++|.. ..++. +..+++|++|++.+|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYRG--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCTT--GGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChHH--hccCCCCCEEEeeCc
Confidence 99999999887 7889999999999999997 88887 699999999999999876 44663 889999999999998
Q ss_pred ccc
Q 043214 575 FVE 577 (793)
Q Consensus 575 ~~~ 577 (793)
.+.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 764
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1.6e-13 Score=154.00 Aligned_cols=134 Identities=23% Similarity=0.341 Sum_probs=75.6
Q ss_pred cCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCC
Q 043214 424 RCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDY 503 (793)
Q Consensus 424 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 503 (793)
+++.|++++|.+..+|... +++|+.|++++|.+. .+| ..+++|++|++++|.++.+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~--~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI--SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS--CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc--ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 6777777777776666543 355666666666554 454 234566666666666665555 433 566666666
Q ss_pred cccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 504 GVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 504 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
|.+..++. .+++|++|++++|.++.+|. .+++|++|++++|... .+|. ++ ++|++|++++|.+.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCS
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCC
Confidence 65555222 45566666666666555554 3555666666655442 2444 22 55555555555443
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=1.7e-14 Score=154.54 Aligned_cols=243 Identities=14% Similarity=0.091 Sum_probs=150.1
Q ss_pred ecCCCcc-cccccCCC-CCccEEEccccCccccccCh----hhhcCCC-cceEEEecCCcCCCC-Chhhhcc-----cCC
Q 043214 430 LHNCKID-ELLEGLEC-PQLKLLHMATEDLSVQQIPN----NFFIGMT-ELRVLDFVAMHLPSL-PSSLCLL-----SNL 496 (793)
Q Consensus 430 l~~~~~~-~l~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~~~~~-~Lr~L~l~~~~~~~l-p~~i~~l-----~~L 496 (793)
++.+.+. .+|..... ++|+.|+++++.+. ..+. ..|..++ +|++|++++|.+... +..+..+ ++|
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4444543 23333333 44888888887765 4444 4567777 788888888888743 5556664 888
Q ss_pred cEEEcCCcccCC--Ccc----cccC-CcccEEEecCCCCcccChh-----ccc-CCCCCEEecCCCcCcc----ccChhh
Q 043214 497 QTLCLDYGVFGD--VSI----IGEL-KTLEILSFQGSNIEEFPRE-----IGQ-LTRLRLLNLAYCNLLK----VIPSNV 559 (793)
Q Consensus 497 ~~L~L~~~~~~~--~~~----i~~l-~~L~~L~l~~~~l~~lp~~-----i~~-L~~L~~L~l~~~~~~~----~~p~~~ 559 (793)
++|++++|.+.. +.. +..+ ++|++|++++|.+...+.. +.. .++|++|++++|.... .++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI- 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence 888888888765 333 3444 7888888888888765542 233 2588888888876643 23332
Q ss_pred hcCCC-CcceeeccccccceeecccccccCcccHHHhcCC-CCCcEEEEEeccCCc-----cCcccccccccEEEEEecC
Q 043214 560 LSSLS-RLEELYMGYTFVEWEIEGLNNVRSKASLHELKQL-SYLTNLEIQIQDANV-----LPKGLLSKKLKRYKIFIGD 632 (793)
Q Consensus 560 i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l-~~L~~L~i~~~~~~~-----~~~~~~~~~L~~L~l~~~~ 632 (793)
+..++ +|++|++++|.+....+ ......+..+ ++|+.|++++|.+.. ++..+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~------------- 221 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNC-------AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS------------- 221 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-------------
T ss_pred HhcCCccccEeeecCCCCchhhH-------HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-------------
Confidence 44554 88888888887654322 1122345555 488888888887765 222211
Q ss_pred ccCcccccCCceEEEeecCCcccchhh----HHHhhcCCcEEEeccccC-------ccccccccccCCCCCCCceEeecC
Q 043214 633 EWNWSDQLQNSRILKLKLNNSTWLKDD----VFMQMKGIEELYLDEMRG-------VKNIVYDLDREGFPKLKHPQIQNN 701 (793)
Q Consensus 633 ~~~~~~~~~~L~~L~l~~~~~~~~p~~----~~~~l~~L~~L~L~~~~~-------~~~~~~~~~~~~l~~L~~L~l~~~ 701 (793)
..+++|+.|+++++.....+.. ....+++|+.|++++|.. ...++..+ ..+++|+.|+++++
T Consensus 222 -----~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N 294 (362)
T 3goz_A 222 -----SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGK 294 (362)
T ss_dssp -----HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSC
T ss_pred -----cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCC
Confidence 1134666777776665554331 123357888888888761 12223333 45677777777776
Q ss_pred C
Q 043214 702 P 702 (793)
Q Consensus 702 ~ 702 (793)
.
T Consensus 295 ~ 295 (362)
T 3goz_A 295 E 295 (362)
T ss_dssp B
T ss_pred c
Confidence 4
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=3.6e-13 Score=132.90 Aligned_cols=150 Identities=16% Similarity=0.253 Sum_probs=117.5
Q ss_pred CCeEEecCCCcccccccCCCCCccEEEccccCcccccc-ChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcEEEcC
Q 043214 425 CPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQI-PNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLD 502 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 502 (793)
.+.++++++.+..+|... .+.++.|.++++.+. .+ +...|..+++|++|++++|.++.++. .+..+++|++|+|+
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC--EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCC--ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357888888888887644 456788888888776 44 44567888999999999998886654 78888999999999
Q ss_pred CcccCC--CcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 503 YGVFGD--VSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 503 ~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
+|.+.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|......|. .+..+++|++|++.+|.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCcCCcC
Confidence 988877 34588889999999999888866 56688888999999988776544444 47888888888888887654
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=5e-13 Score=131.91 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=109.4
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYG 504 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 504 (793)
+.++..++.+..+|.... ++++.|.+.++.+. .++...|..+++|++|++++|.+..+ |..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 467777777777776543 67888888887766 66666677888888888888888754 677888888888888888
Q ss_pred ccCC-Cc-ccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 505 VFGD-VS-IIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 505 ~~~~-~~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
.+.. ++ .+..+++|++|++++|.+..+ |..+..+++|++|++++|... .+|+..+..+++|++|++.+|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence 8777 33 357788888888888888766 445778888888888887653 445444777788888888777654
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=1.1e-12 Score=147.17 Aligned_cols=192 Identities=19% Similarity=0.262 Sum_probs=149.0
Q ss_pred CCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEec
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQ 524 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~ 524 (793)
.+++.|++.++.+. .+|..+ +++|++|++++|.++.+| ..+++|++|++++|.+..++.+++ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~--~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLS--SLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCS--CCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECC
T ss_pred CCccEEEeCCCCCC--ccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECC
Confidence 48899999988876 677765 378999999999999888 457899999999999888333665 99999999
Q ss_pred CCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEE
Q 043214 525 GSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNL 604 (793)
Q Consensus 525 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L 604 (793)
+|.++.+|. .+++|++|++++|... .+|. .+++|++|++++|.+.. ++ .+. ++|+.|
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp------------~l~--~~L~~L 185 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LP------------ELP--ESLEAL 185 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CC------------CCC--TTCCEE
T ss_pred CCcCCCCCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cc------------hhh--CCCCEE
Confidence 999999987 6899999999998764 4775 57899999999998754 33 122 789999
Q ss_pred EEEeccCCccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccccc
Q 043214 605 EIQIQDANVLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVYD 684 (793)
Q Consensus 605 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~~ 684 (793)
++++|.+..+|. +. .+| ....+.|+.|++++|....+|.++.. +++|+.|+|++|......|..
T Consensus 186 ~Ls~N~L~~lp~-~~-~~L-------------~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 186 DVSTNLLESLPA-VP-VRN-------------HHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp ECCSSCCSSCCC-CC----------------------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHHHHHH
T ss_pred ECcCCCCCchhh-HH-Hhh-------------hcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCcCHHH
Confidence 999999988877 32 121 11234458888888888889988876 789999999998876665554
Q ss_pred c
Q 043214 685 L 685 (793)
Q Consensus 685 ~ 685 (793)
+
T Consensus 250 l 250 (571)
T 3cvr_A 250 L 250 (571)
T ss_dssp H
T ss_pred H
Confidence 4
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=4.5e-13 Score=131.19 Aligned_cols=170 Identities=21% Similarity=0.305 Sum_probs=122.6
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChh-hhcccCCcEEEcCCc
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSS-LCLLSNLQTLCLDYG 504 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~ 504 (793)
+.+...++.+..+|... .++++.|++.++.+. .++...|..+++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45566666666666543 567888888888776 67777778888888888888888877654 577888888888888
Q ss_pred ccCC-C-cccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeec
Q 043214 505 VFGD-V-SIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIE 581 (793)
Q Consensus 505 ~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~ 581 (793)
.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|... .+|+..+..+++|++|++.+|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec---
Confidence 8777 3 3467888888888888888877765 678888888888887654 5565557788888888888876532
Q ss_pred ccccccCcccHHHhcCCCCCcEEEEEeccCC-ccCcc
Q 043214 582 GLNNVRSKASLHELKQLSYLTNLEIQIQDAN-VLPKG 617 (793)
Q Consensus 582 ~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~-~~~~~ 617 (793)
.+++|+.|.+..+.+. .+|..
T Consensus 163 ---------------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ---------------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---------------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ---------------CCCCHHHHHHHHHhCCceeecc
Confidence 3445666666655543 44443
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=2.3e-12 Score=126.18 Aligned_cols=150 Identities=20% Similarity=0.258 Sum_probs=82.5
Q ss_pred hccCCeEEecCCCccccccc--CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChh-hhcccCCcE
Q 043214 422 LKRCPAISLHNCKIDELLEG--LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSS-LCLLSNLQT 498 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~ 498 (793)
+.+++++++++|.+..++.. ..+++|+.|++.++.+. .++...|..+++|++|++++|.+..+|.. +..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 34556666666665555442 25566666666655554 45555555566666666666666555433 455666666
Q ss_pred EEcCCcccCC-C-cccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccc
Q 043214 499 LCLDYGVFGD-V-SIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTF 575 (793)
Q Consensus 499 L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~ 575 (793)
|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|+.|+++.|.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHHh
Confidence 6666665555 2 2245566666666666665555543 45566666666665533 2234455555555555
Q ss_pred cceeec
Q 043214 576 VEWEIE 581 (793)
Q Consensus 576 ~~~~~~ 581 (793)
+.+.+|
T Consensus 177 ~~g~ip 182 (208)
T 2o6s_A 177 HSGVVR 182 (208)
T ss_dssp CTTTBB
T ss_pred CCceee
Confidence 544443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.1e-12 Score=133.16 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=132.9
Q ss_pred hhhhccCCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 419 KEALKRCPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 419 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
.....+++.+++.+|.+..++....+++|+.|+++++.+. .+++ +..+++|++|++++|.+..+|.... .+|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~--~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS--DLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC--CCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC--CChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 4567889999999999998887778999999999999877 6666 7899999999999999998876443 99999
Q ss_pred EEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 499 LCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 499 L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
|++++|.+..++.++.+++|++|++++|+++.+| .+..+++|++|++++|..... + . +..+++|+.|++++|.+..
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~-~-l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G-G-LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T-T-STTCCCCCEEEEEEEEEEC
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H-H-hccCCCCCEEeCCCCcccC
Confidence 9999999999888999999999999999999987 689999999999999877554 3 2 8899999999999987754
Q ss_pred e
Q 043214 579 E 579 (793)
Q Consensus 579 ~ 579 (793)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=9.7e-13 Score=129.84 Aligned_cols=147 Identities=16% Similarity=0.258 Sum_probs=109.6
Q ss_pred cEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcccCC--CcccccCCcccEEEec
Q 043214 448 KLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQ 524 (793)
Q Consensus 448 ~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~ 524 (793)
+.+++.++.+. .+|..+ .+.|+.|++++|.+..+|. .+..+++|++|+|++|.+.. +..+.++++|++|+++
T Consensus 14 ~~v~c~~~~l~--~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT--EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS--SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC--cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45666666555 677644 3678888888888886654 67888888888888888776 5778888888888888
Q ss_pred CCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcE
Q 043214 525 GSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTN 603 (793)
Q Consensus 525 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~ 603 (793)
+|.++.+|.. +..+++|++|++++|.... +++..+..+++|++|++++|.+....+ ..+..+++|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~ 156 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAK-----------GTFSPLRAIQT 156 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECH-----------HHHhCCCCCCE
Confidence 8888888776 5778888888888876644 443447888888888888887754433 24667778888
Q ss_pred EEEEeccC
Q 043214 604 LEIQIQDA 611 (793)
Q Consensus 604 L~i~~~~~ 611 (793)
|++++|.+
T Consensus 157 L~L~~N~~ 164 (220)
T 2v9t_B 157 MHLAQNPF 164 (220)
T ss_dssp EECCSSCE
T ss_pred EEeCCCCc
Confidence 88877654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=9.7e-13 Score=140.64 Aligned_cols=171 Identities=18% Similarity=0.247 Sum_probs=112.2
Q ss_pred CeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhc-CCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCC
Q 043214 426 PAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFI-GMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDY 503 (793)
Q Consensus 426 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 503 (793)
+.++..++.+..+|... .+.++.|+++++.+. .++...|. .+++|++|++++|.+..+| ..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46677777777666543 345777777777665 56666565 7777777777777777554 4577777777777777
Q ss_pred cccCC--CcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccChhhh---cCCCCcceeeccccccc
Q 043214 504 GVFGD--VSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIPSNVL---SSLSRLEELYMGYTFVE 577 (793)
Q Consensus 504 ~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i---~~l~~L~~L~l~~~~~~ 577 (793)
|.+.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|.. ..+|...+ ..+++|++|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77766 34567777777777777777755 44577777777777777654 44665544 45777777777777664
Q ss_pred eeecccccccCcccHHHhcCCCC--CcEEEEEeccC
Q 043214 578 WEIEGLNNVRSKASLHELKQLSY--LTNLEIQIQDA 611 (793)
Q Consensus 578 ~~~~~~~~~~~~~~l~~l~~l~~--L~~L~i~~~~~ 611 (793)
... ...+..++. |+.|++.+|.+
T Consensus 177 ~l~-----------~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLP-----------LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCC-----------HHHHHHSCHHHHTTEECCSSCE
T ss_pred ccC-----------HHHhhhccHhhcceEEecCCCc
Confidence 321 134445554 35666666544
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.5e-12 Score=122.65 Aligned_cols=139 Identities=22% Similarity=0.121 Sum_probs=97.7
Q ss_pred CCcceEEEecCCcCC--CCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcc-cChhcccCCCCCEEec
Q 043214 470 MTELRVLDFVAMHLP--SLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEE-FPREIGQLTRLRLLNL 546 (793)
Q Consensus 470 ~~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 546 (793)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 466777777777776 6777777778888888888777666777778888888888887776 6666667888888888
Q ss_pred CCCcCccccCh-hhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCcc
Q 043214 547 AYCNLLKVIPS-NVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKG 617 (793)
Q Consensus 547 ~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~ 617 (793)
++|.. ..+|. ..++.+++|++|++++|.+....+ .....+..+++|+.|++..|....+|..
T Consensus 103 s~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 87755 33331 236778888888888776643211 0113567778888888888777766654
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=2.4e-12 Score=127.01 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=116.4
Q ss_pred cEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC--hhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEe
Q 043214 448 KLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP--SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSF 523 (793)
Q Consensus 448 ~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l 523 (793)
+.++++++.+. .+|..+ ...+++|++++|.+..++ ..+..+++|++|++++|.+.. +..+.++++|++|++
T Consensus 14 ~~l~~s~n~l~--~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN--KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS--SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc--cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 57788777665 677644 345689999999988663 347889999999999998887 347889999999999
Q ss_pred cCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 524 QGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 524 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
++|.++.+|.. +..+++|++|++++|......|. .+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~ 156 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAP-----------GAFDTLHSLS 156 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCT-----------TTTTTCTTCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECH-----------HHhcCCCCCC
Confidence 99999887765 78899999999999877554454 47889999999999888765444 3677788899
Q ss_pred EEEEEeccCC
Q 043214 603 NLEIQIQDAN 612 (793)
Q Consensus 603 ~L~i~~~~~~ 612 (793)
.|++++|.+.
T Consensus 157 ~L~L~~N~l~ 166 (220)
T 2v70_A 157 TLNLLANPFN 166 (220)
T ss_dssp EEECCSCCEE
T ss_pred EEEecCcCCc
Confidence 9988877654
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=2.9e-12 Score=127.35 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=118.4
Q ss_pred ccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCcccCC-C-cccccCCcccEEEe
Q 043214 447 LKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVFGD-V-SIIGELKTLEILSF 523 (793)
Q Consensus 447 L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~-~~i~~l~~L~~L~l 523 (793)
.+.+++.++.+. .+|..+ .++|++|++++|.+..+ |..+..+++|++|+|++|.+.. + ..+..+++|++|++
T Consensus 21 ~~~v~c~~~~l~--~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA--SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcC--ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 456777666655 777644 48899999999999866 6778899999999999999877 3 44688999999999
Q ss_pred cCCCCcccChh-cccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCc
Q 043214 524 QGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLT 602 (793)
Q Consensus 524 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 602 (793)
++|.++.+|.. +..+++|++|++++|.. ..+|.. +..+++|++|++++|.+....+ ..+..+++|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~ 162 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSIPH-----------GAFDRLSSLT 162 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCCT-----------TTTTTCTTCC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCccCH-----------HHHhCCCCCC
Confidence 99999988765 57899999999998876 478876 7889999999999887764322 3567788899
Q ss_pred EEEEEeccCC
Q 043214 603 NLEIQIQDAN 612 (793)
Q Consensus 603 ~L~i~~~~~~ 612 (793)
.|++.+|.+.
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 9998887664
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=2.2e-12 Score=137.86 Aligned_cols=156 Identities=24% Similarity=0.326 Sum_probs=133.8
Q ss_pred hhhccCCeEEecCCCcccccccC---CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCCh-hhhcccC
Q 043214 420 EALKRCPAISLHNCKIDELLEGL---ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPS-SLCLLSN 495 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~ 495 (793)
..+..++.|++++|.+..++... .+++|+.|+++++.+. .+++..|..+++|++|++++|.+..+|. .+..+.+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 34567899999999998887653 7899999999999887 7787778999999999999999997664 6899999
Q ss_pred CcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChhc----ccCCCCCEEecCCCcCccccChhhhcCCCC--cc
Q 043214 496 LQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPREI----GQLTRLRLLNLAYCNLLKVIPSNVLSSLSR--LE 567 (793)
Q Consensus 496 L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~--L~ 567 (793)
|++|+|++|.+.. +..+.++++|++|++++|.++.+|..+ ..+++|++|++++|.. ..+|...+..+++ |+
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCCHHHHHHSCHHHHT
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHHHhhhccHhhcc
Confidence 9999999999887 678999999999999999999999875 6799999999999876 5677666788887 48
Q ss_pred eeeccccccce
Q 043214 568 ELYMGYTFVEW 578 (793)
Q Consensus 568 ~L~l~~~~~~~ 578 (793)
.|++.+|.+..
T Consensus 193 ~l~l~~N~~~C 203 (361)
T 2xot_A 193 GLYLHNNPLEC 203 (361)
T ss_dssp TEECCSSCEEC
T ss_pred eEEecCCCccC
Confidence 89999987753
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=3.5e-14 Score=160.24 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=126.9
Q ss_pred hccCCeEEecCCCcccccccC-CCCCccEEEccccCc-----------cccccChhhhcCCCcceEEE-ecCCcCCCCCh
Q 043214 422 LKRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDL-----------SVQQIPNNFFIGMTELRVLD-FVAMHLPSLPS 488 (793)
Q Consensus 422 ~~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~-----------~~~~~~~~~~~~~~~Lr~L~-l~~~~~~~lp~ 488 (793)
..+++++++++|.+..+|..+ .+++|+.|++.++.. .....++..+..+++|+.|+ ++.+.+..++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 456667777777777777655 566777776644320 00123334456667777776 45443332221
Q ss_pred ------hhhc--ccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhh
Q 043214 489 ------SLCL--LSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVL 560 (793)
Q Consensus 489 ------~i~~--l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i 560 (793)
.+.. ...|++|++++|.+..++.++.+++|++|++++|.++.+|..++.+++|++|++++|... .+| . +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-c
Confidence 1111 125888999988888855588889999999999988888888889999999999887764 467 4 7
Q ss_pred cCCCCcceeeccccccceee-cccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc
Q 043214 561 SSLSRLEELYMGYTFVEWEI-EGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL 618 (793)
Q Consensus 561 ~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~ 618 (793)
+.+++|++|++++|.+.... | ..++.+++|+.|++++|.+...|+..
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p-----------~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAI-----------QPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTT-----------GGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCcEEECCCCCCCCCCCc-----------HHHhcCCCCCEEEecCCcCCCCccHH
Confidence 88999999999888776442 3 46788888999999988887776543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=7.2e-12 Score=117.95 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=76.8
Q ss_pred CCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-Cc-ccccCCcccEEE
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VS-IIGELKTLEILS 522 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~-~i~~l~~L~~L~ 522 (793)
++|+.|++.++.+....+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. ++ .+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 445555555554431244443 35566666666666666655 556666666666666666655 33 333466677777
Q ss_pred ecCCCCcccC--hhcccCCCCCEEecCCCcCccccCh---hhhcCCCCcceeecccccc
Q 043214 523 FQGSNIEEFP--REIGQLTRLRLLNLAYCNLLKVIPS---NVLSSLSRLEELYMGYTFV 576 (793)
Q Consensus 523 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~---~~i~~l~~L~~L~l~~~~~ 576 (793)
+++|.++.+| ..+..+++|++|++++|... .+|. ..+..+++|++|++.+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCCh
Confidence 7766666655 45666677777777666543 3343 2366677777777666654
No 124
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.29 E-value=3.1e-12 Score=110.00 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043214 11 KISEYLVAPMILPFTYLCNYKSNFENLKNEIGKLRVARESVLHRVDDAKRNG-EDIEQKVEKWLSDVDKIMDAAGQIIED 89 (793)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~-~~~~~~~~~wl~~l~~~~~~~ed~ld~ 89 (793)
.+++++.+.+.+ .+....++++++++|+++|++|++||.+|++++ +..++.++.|+++||+++||+||++|+
T Consensus 5 ~ll~KL~~ll~~-------E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~ 77 (115)
T 3qfl_A 5 NLIPKLGELLTE-------EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77 (115)
T ss_dssp SHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454443 456778999999999999999999999999874 346899999999999999999999999
Q ss_pred HHHHh
Q 043214 90 EERAK 94 (793)
Q Consensus 90 ~~~~~ 94 (793)
|.+..
T Consensus 78 f~~~~ 82 (115)
T 3qfl_A 78 FLVQV 82 (115)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.6e-11 Score=118.33 Aligned_cols=105 Identities=19% Similarity=0.209 Sum_probs=60.0
Q ss_pred cceEEEecCCcCCCCChh--hhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEec
Q 043214 472 ELRVLDFVAMHLPSLPSS--LCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNL 546 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp~~--i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 546 (793)
.|++|++++|.+..+|.. +..+++|++|+|++|.+.. |..+.++++|++|++++|+++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555566666655555432 5566666666666665555 34556666666666666666655433 556666666666
Q ss_pred CCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 547 AYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 547 ~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
++|......|.. ++.+++|++|++.+|.+.
T Consensus 110 ~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGS-FEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTS-STTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHH-hhcCCCCCEEEeCCCCcc
Confidence 665554433433 556666666666666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=4.8e-12 Score=116.49 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=64.8
Q ss_pred CCcceEEEecCCcCC--CCChhhhcccCCcEEEcCCcccCCCcccccCCcccEEEecCCCCcc-cChhcccCCCCCEEec
Q 043214 470 MTELRVLDFVAMHLP--SLPSSLCLLSNLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEE-FPREIGQLTRLRLLNL 546 (793)
Q Consensus 470 ~~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 546 (793)
.++|+.|++++|.+. .+|..+..+++|++|++++|.+.....++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 355666666666665 5666666666666666666666555556666666666666666665 5555555666666666
Q ss_pred CCCcCccccC--hhhhcCCCCcceeeccccccc
Q 043214 547 AYCNLLKVIP--SNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 547 ~~~~~~~~~p--~~~i~~l~~L~~L~l~~~~~~ 577 (793)
++|.... +| .. ++.+++|++|++++|.+.
T Consensus 96 s~N~i~~-~~~~~~-~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNKIKD-LSTIEP-LKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCS-HHHHGG-GGGCTTCCEEECTTCGGG
T ss_pred CCCcCCC-hHHHHH-HhhCCCCCEEeCcCCccc
Confidence 6665433 22 22 566666666666666553
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=1.5e-11 Score=113.06 Aligned_cols=102 Identities=24% Similarity=0.347 Sum_probs=49.9
Q ss_pred cCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-C-cccccCCcccEEEecCCCCcccC--hhcccCCCCCE
Q 043214 468 IGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-V-SIIGELKTLEILSFQGSNIEEFP--REIGQLTRLRL 543 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 543 (793)
..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 4445555555555555444 344455555555555555444 2 22333555555555555555433 44555555555
Q ss_pred EecCCCcCccccCh---hhhcCCCCcceeec
Q 043214 544 LNLAYCNLLKVIPS---NVLSSLSRLEELYM 571 (793)
Q Consensus 544 L~l~~~~~~~~~p~---~~i~~l~~L~~L~l 571 (793)
|++++|... .+|+ ..++.+++|++|++
T Consensus 118 L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFNCEVT-NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTCGGG-GSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcCCccc-chHHHHHHHHHHCCCcccccC
Confidence 555555432 2232 23455555555554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.4e-11 Score=115.95 Aligned_cols=123 Identities=19% Similarity=0.291 Sum_probs=89.8
Q ss_pred EEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCC
Q 043214 449 LLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGS 526 (793)
Q Consensus 449 ~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~ 526 (793)
.+++.++.+. .+|..+ .+.|++|++++|.+..+|..+..+++|++|++++|.+.. +..+.++++|++|++++|
T Consensus 14 ~l~~~~~~l~--~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK--VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS--SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC--cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3444444443 555433 256788888888888888888888888888888888777 355788888888888888
Q ss_pred CCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 527 NIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 527 ~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
.++.+|. .+..+++|++|++++|.. ..+|+..+..+++|+.|++.+|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCee
Confidence 8887765 477888888888888765 4566655777888888888877664
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=2.6e-12 Score=149.60 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=80.3
Q ss_pred ccCCeEEecCCCcccccccC-CCCCccEEEccccCc---cccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcE
Q 043214 423 KRCPAISLHNCKIDELLEGL-ECPQLKLLHMATEDL---SVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQT 498 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 498 (793)
..++++++..+.+...+... ...+|+.+.+..... .. .+++..|..++.|++|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 34566666666554433222 333333333322110 11 24445566777777777777777777777777777777
Q ss_pred EEcCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccc
Q 043214 499 LCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 499 L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
|+|++|.+.. |..++++++|++|+|++|.++.+|..+++|++|++|+|++|.. ..+|.. ++.+++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChh-hhcCCCccEEeCCCCccC
Confidence 7777777666 6667777777777777777777777777777777777777654 466766 677777777777777665
Q ss_pred eeec
Q 043214 578 WEIE 581 (793)
Q Consensus 578 ~~~~ 581 (793)
+.++
T Consensus 330 ~~~p 333 (727)
T 4b8c_D 330 KQFL 333 (727)
T ss_dssp SHHH
T ss_pred CCCh
Confidence 5433
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=8.6e-12 Score=145.27 Aligned_cols=135 Identities=22% Similarity=0.228 Sum_probs=117.4
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEE
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEIL 521 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L 521 (793)
.+++|+.|+++++.+. .+|..++ .+++|++|+|++|.+..+|..++.|++|++|+|++|.+.. |..++++++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~--~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF--NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS--CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC--CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 7899999999999877 8888875 8999999999999999999999999999999999999988 8899999999999
Q ss_pred EecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCC-cceeeccccccceeec
Q 043214 522 SFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSR-LEELYMGYTFVEWEIE 581 (793)
Q Consensus 522 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~-L~~L~l~~~~~~~~~~ 581 (793)
+|++|.++.+|..+++|++|++|+|++|.+.+.+|.. ++.+.. +..|++.+|.+.+.++
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCc
Confidence 9999999999999999999999999999887777764 444322 2346777777765544
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=4.8e-12 Score=120.13 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=72.6
Q ss_pred cCCCcceEEEecCCcCCCCChhhhccc-CCcEEEcCCcccCCCcccccCCcccEEEecCCCCcccChhc-ccCCCCCEEe
Q 043214 468 IGMTELRVLDFVAMHLPSLPSSLCLLS-NLQTLCLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPREI-GQLTRLRLLN 545 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~ 545 (793)
..+.+|+.|++++|.+..+|. +..+. +|++|++++|.+..++.++.+++|++|++++|.++.+|..+ ..+++|++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 345556666666666555543 33333 66666666666555555566666666666666666655443 5666666666
Q ss_pred cCCCcCccccCh-hhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccC
Q 043214 546 LAYCNLLKVIPS-NVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDA 611 (793)
Q Consensus 546 l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~ 611 (793)
+++|.. ..+|. ..++.+++|++|++++|.+... +. .....+..+++|+.|+++.+..
T Consensus 95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~-------~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNK-KH-------YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGS-TT-------HHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCc-Hh-------HHHHHHHHCCccceeCCCcCCH
Confidence 666544 34443 1255566666666666655321 10 0011355566666666665544
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1.4e-11 Score=116.78 Aligned_cols=135 Identities=15% Similarity=0.154 Sum_probs=112.9
Q ss_pred ccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-Cccc-ccC
Q 043214 438 LLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSII-GEL 515 (793)
Q Consensus 438 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i-~~l 515 (793)
.+....+++|+.|.+.++.+. .++. +....++|++|++++|.+..+ ..+..+++|++|++++|.+.. ++.+ +.+
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HHhcCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 344557899999999999877 5654 434445999999999999977 678999999999999999988 5554 899
Q ss_pred CcccEEEecCCCCcccCh--hcccCCCCCEEecCCCcCccccChh---hhcCCCCcceeeccccccc
Q 043214 516 KTLEILSFQGSNIEEFPR--EIGQLTRLRLLNLAYCNLLKVIPSN---VLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 516 ~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~---~i~~l~~L~~L~l~~~~~~ 577 (793)
++|++|++++|.+..+|. .+..+++|++|++++|... .+|.. .++.+++|+.|++..|...
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999999999987 7899999999999998764 56653 4789999999999887653
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=6.5e-11 Score=113.94 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=110.9
Q ss_pred CCeEEecCCCcccccccCCCCCccEEEccccCccccccCh-hhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcC
Q 043214 425 CPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPN-NFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLD 502 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 502 (793)
.+.++++++.+..+|... .++++.|.+.++.+. .++. ..|..+++|++|++++|.++.+ |..+..+++|++|+|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCC-CCCCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 368899999998888755 349999999999876 5655 4579999999999999999976 7889999999999999
Q ss_pred CcccCC--CcccccCCcccEEEecCCCCccc-ChhcccCCCCCEEecCCCcCccccC
Q 043214 503 YGVFGD--VSIIGELKTLEILSFQGSNIEEF-PREIGQLTRLRLLNLAYCNLLKVIP 556 (793)
Q Consensus 503 ~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p 556 (793)
+|.+.. +..+.++++|++|++++|+++.+ |..+..+++|++|++++|......+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999988 45589999999999999999965 6779999999999999987765444
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.3e-10 Score=110.37 Aligned_cols=105 Identities=23% Similarity=0.402 Sum_probs=50.8
Q ss_pred cceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcccCC-C-cccccCCcccEEEecCCCCcccChh-cccCCCCCEEecC
Q 043214 472 ELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGVFGD-V-SIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLA 547 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~ 547 (793)
+|+.|++++|.+..+|. .+..+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44445555544444332 23444555555555554444 2 2234555555555555555544443 3455555555555
Q ss_pred CCcCccccChhhhcCCCCcceeeccccccc
Q 043214 548 YCNLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 548 ~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
+|.. ..+|+..+..+++|++|++++|.+.
T Consensus 109 ~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCC-SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcc-eEeCHHHhcCCcccCEEEecCCCee
Confidence 5433 2344443445555555555555544
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.8e-10 Score=110.88 Aligned_cols=124 Identities=21% Similarity=0.337 Sum_probs=108.4
Q ss_pred CCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCC
Q 043214 425 CPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDY 503 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 503 (793)
-+.++++++.+..+|... .++++.|.+.++.+. .+|. .|..+++|++|++++|.++.++ ..|..+++|++|+|++
T Consensus 12 ~~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~--~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT--LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC--SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc--hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 357888888888888754 478999999999887 7874 5699999999999999999776 5699999999999999
Q ss_pred cccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCc
Q 043214 504 GVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLL 552 (793)
Q Consensus 504 ~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 552 (793)
|.+.. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99888 45799999999999999999999875 788999999999998653
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=8.9e-11 Score=132.36 Aligned_cols=102 Identities=25% Similarity=0.228 Sum_probs=49.5
Q ss_pred ceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcC
Q 043214 473 LRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNL 551 (793)
Q Consensus 473 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 551 (793)
|++|++++|.++.+|. ++.+++|++|+|++|.+.. |..++++++|++|++++|.++.+| .++.+++|++|++++|..
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 4445555554444443 4455555555555554444 444555555555555555555444 455555555555555443
Q ss_pred cccc-ChhhhcCCCCcceeeccccccc
Q 043214 552 LKVI-PSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 552 ~~~~-p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
.... |.. ++.+++|++|++++|.+.
T Consensus 521 ~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 521 QQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred CCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 3222 333 445555555555555443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=3.5e-12 Score=123.70 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=96.3
Q ss_pred ccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC-CcccccCCcccEEEecCCCCcccChhcccCC
Q 043214 461 QIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPREIGQLT 539 (793)
Q Consensus 461 ~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~ 539 (793)
.+|. .+..+++|++|++++|.+..+| .+..+++|++|++++|.+.. |..+..+++|++|++++|.++.+| .+..++
T Consensus 39 ~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 4444 3577888888888888888777 78888888888888888777 556666788888888888888776 577888
Q ss_pred CCCEEecCCCcCccccCh-hhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEE
Q 043214 540 RLRLLNLAYCNLLKVIPS-NVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLE 605 (793)
Q Consensus 540 ~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~ 605 (793)
+|++|++++|... .+|. ..+..+++|++|++.+|.+....+... .........+..+++|+.|+
T Consensus 116 ~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-THHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccccccc-chHHHHHHHHHhCCCcEEEC
Confidence 8888888887653 3332 236788888888888887654432100 00111123467777888775
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=3.2e-10 Score=107.56 Aligned_cols=129 Identities=19% Similarity=0.296 Sum_probs=99.3
Q ss_pred CCeEEecCCCcccccccCCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChh-hhcccCCcEEEcCC
Q 043214 425 CPAISLHNCKIDELLEGLECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSS-LCLLSNLQTLCLDY 503 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~ 503 (793)
.+.+++.++.+..+|... .++|+.|.+.++.+. .++...|..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777777777543 478888888888766 67777778888888888888888877654 57888888888888
Q ss_pred cccCC-C-cccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCcCccccC
Q 043214 504 GVFGD-V-SIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCNLLKVIP 556 (793)
Q Consensus 504 ~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p 556 (793)
|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|......|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88877 3 3467888888888888888888776 4678888888888887655443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=6.2e-12 Score=121.91 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=111.8
Q ss_pred ccccccc-CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCCCcccc
Q 043214 435 IDELLEG-LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGDVSIIG 513 (793)
Q Consensus 435 ~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~ 513 (793)
+..++.. ..+++|+.|+++++.+. .+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.+..++.++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~--~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIE--KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEES--CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCc--ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccc
Confidence 3444433 37899999999998876 577 468899999999999999999998999999999999999999966899
Q ss_pred cCCcccEEEecCCCCcccCh--hcccCCCCCEEecCCCcCccccCh---------hhhcCCCCcceee
Q 043214 514 ELKTLEILSFQGSNIEEFPR--EIGQLTRLRLLNLAYCNLLKVIPS---------NVLSSLSRLEELY 570 (793)
Q Consensus 514 ~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~---------~~i~~l~~L~~L~ 570 (793)
.+++|++|++++|.+..+|. .+..+++|++|++++|......|. ..+..+++|++|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999999998765 688999999999999977555442 2467899999997
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=3.7e-10 Score=118.95 Aligned_cols=280 Identities=10% Similarity=-0.000 Sum_probs=162.5
Q ss_pred CCcceEEEecCCcCCCCChhhhc-ccCCcEEEcCCcccCC-CcccccCCcccEEEecCCCCcccCh-hccc--------C
Q 043214 470 MTELRVLDFVAMHLPSLPSSLCL-LSNLQTLCLDYGVFGD-VSIIGELKTLEILSFQGSNIEEFPR-EIGQ--------L 538 (793)
Q Consensus 470 ~~~Lr~L~l~~~~~~~lp~~i~~-l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~--------L 538 (793)
+.+++.|.++++--..-...+.. +++|++|+|++|.+.. ...-+.++.+..+.+..+ .+|. .+.. +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 45678888877521111123333 7889999999998773 111122333455555444 3443 3556 8
Q ss_pred CCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEec----cCCcc
Q 043214 539 TRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQ----DANVL 614 (793)
Q Consensus 539 ~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~----~~~~~ 614 (793)
++|+.|.+.+ .+..++...+..+++|+++.+..+.+....+ ..+..+.++..+..... ....+
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-----------~aF~~~~~l~~l~~~~~~~~~~~~~i 167 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP-----------EALADSVTAIFIPLGSSDAYRFKNRW 167 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECT-----------TSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccch-----------hhhcCCCceEEecCcchhhhhccccc
Confidence 9999999987 4577888888899999999998887653222 23334444443332221 11111
Q ss_pred Ccccc--ccccc-EEEEEecCccC-----cccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccc-ccc
Q 043214 615 PKGLL--SKKLK-RYKIFIGDEWN-----WSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIV-YDL 685 (793)
Q Consensus 615 ~~~~~--~~~L~-~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~-~~~ 685 (793)
....+ +..|+ .+.+....... ....+.++..+.+.+.....-...+...+++|+.|+|.++.. +.++ ..+
T Consensus 168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i-~~I~~~aF 246 (329)
T 3sb4_A 168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA-TTIPDFTF 246 (329)
T ss_dssp TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC-CEECTTTT
T ss_pred cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc-ceecHhhh
Confidence 11111 12222 11121111000 011244555666655432222233334478999999988754 3444 334
Q ss_pred ccCCCCCCCceEeecCCCcceeccccCccCCccCcccc-eeecccccccccccccccccccCCCCCeeeeccCCCCCccc
Q 043214 686 DREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALE-SLSLSNLINLEKICHGKLKAESFCKLTTLKVKSCDKLSFIF 764 (793)
Q Consensus 686 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 764 (793)
.++++|+.|++.++ ++.++.. ....+++|+ .+.+.+ +++.+.... ...+++|+.|++.+. +++.++
T Consensus 247 --~~~~~L~~l~l~~n--i~~I~~~----aF~~~~~L~~~l~l~~--~l~~I~~~a--F~~c~~L~~l~l~~n-~i~~I~ 313 (329)
T 3sb4_A 247 --AQKKYLLKIKLPHN--LKTIGQR----VFSNCGRLAGTLELPA--SVTAIEFGA--FMGCDNLRYVLATGD-KITTLG 313 (329)
T ss_dssp --TTCTTCCEEECCTT--CCEECTT----TTTTCTTCCEEEEECT--TCCEECTTT--TTTCTTEEEEEECSS-CCCEEC
T ss_pred --hCCCCCCEEECCcc--cceehHH----HhhCChhccEEEEEcc--cceEEchhh--hhCCccCCEEEeCCC-ccCccc
Confidence 77889999999875 6666443 345677888 899876 677775333 346889999998766 688886
Q ss_pred chHHhcCCCCCcEEEe
Q 043214 765 SFSVARSLPQLQTIEV 780 (793)
Q Consensus 765 ~~~~~~~l~~L~~L~i 780 (793)
+. .+.++++|+.++.
T Consensus 314 ~~-aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 314 DE-LFGNGVPSKLIYK 328 (329)
T ss_dssp TT-TTCTTCCCCEEEC
T ss_pred hh-hhcCCcchhhhcc
Confidence 53 4577888888763
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=1.9e-09 Score=101.31 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=69.9
Q ss_pred ceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCC
Q 043214 473 LRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYC 549 (793)
Q Consensus 473 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 549 (793)
.++++++++.++.+|..+. .+|++|+|++|.+.. +..+.++++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777776552 677777777777666 34577777777777777777777665 467777777777776
Q ss_pred cCccccChhhhcCCCCcceeeccccccc
Q 043214 550 NLLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 550 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
.. ..+|+..+..+++|++|++++|.+.
T Consensus 89 ~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QL-KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cc-CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 54 3455544667777777777776654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=1.9e-09 Score=101.55 Aligned_cols=101 Identities=23% Similarity=0.398 Sum_probs=61.7
Q ss_pred eEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChh-cccCCCCCEEecCCCc
Q 043214 474 RVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYCN 550 (793)
Q Consensus 474 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 550 (793)
+.++++++.+..+|..+. .+|++|+|++|.+.. +..++++++|++|++++|+++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665543 566666666666655 34566666666666666666666654 3566666666666654
Q ss_pred CccccChhhhcCCCCcceeeccccccc
Q 043214 551 LLKVIPSNVLSSLSRLEELYMGYTFVE 577 (793)
Q Consensus 551 ~~~~~p~~~i~~l~~L~~L~l~~~~~~ 577 (793)
. ..+|+..+..+++|++|++.+|.+.
T Consensus 93 l-~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 L-KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-ceeCHHHhccccCCCEEEeCCCCcc
Confidence 4 3445444566666666666666553
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=5.3e-09 Score=98.52 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=72.5
Q ss_pred cEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCcccCC-Ccc-cccCCcccEEEec
Q 043214 448 KLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVFGD-VSI-IGELKTLEILSFQ 524 (793)
Q Consensus 448 ~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~~~-i~~l~~L~~L~l~ 524 (793)
+.+++.++.+. .+|..+ .++|++|++++|.+..+ |..+..+++|++|+|++|.+.. |+. +.++++|++|+++
T Consensus 15 ~~l~~~~n~l~--~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA--SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC--ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 44555555544 566544 26778888888887766 5567788888888888888777 433 5778888888888
Q ss_pred CCCCcccChh-cccCCCCCEEecCCCcCc
Q 043214 525 GSNIEEFPRE-IGQLTRLRLLNLAYCNLL 552 (793)
Q Consensus 525 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 552 (793)
+|+++.+|.. +..+++|++|++++|...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888888775 778888888888887653
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=5.6e-09 Score=98.02 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=71.3
Q ss_pred cEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEEEcCCcccCC-Cc-ccccCCcccEEEec
Q 043214 448 KLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTLCLDYGVFGD-VS-IIGELKTLEILSFQ 524 (793)
Q Consensus 448 ~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~~-~i~~l~~L~~L~l~ 524 (793)
+.++++++.+. .+|..+ .+.|++|++++|.+..+ |..+..+++|++|+|++|.+.. ++ .+..+++|++|+++
T Consensus 12 ~~l~~s~n~l~--~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLA--SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC--ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 34455554444 455443 36677788888877766 5567788888888888888777 33 45788888888888
Q ss_pred CCCCcccChh-cccCCCCCEEecCCCcCc
Q 043214 525 GSNIEEFPRE-IGQLTRLRLLNLAYCNLL 552 (793)
Q Consensus 525 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 552 (793)
+|+++.+|.. +..+++|++|++++|...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888877764 778888888888887653
No 145
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.85 E-value=2.5e-08 Score=105.83 Aligned_cols=241 Identities=15% Similarity=0.104 Sum_probs=132.0
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--ce-----------------------ecc-
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--IS-----------------------FLM- 175 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq-----------------------~~~- 175 (793)
...++||+.+++.+.+++..+ +++.|+|++|+|||||++++++.... +. +..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 88 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPF 88 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHHHHH
Confidence 346899999999999988653 79999999999999999999875321 00 000
Q ss_pred --------------ccc----cCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC---------cchhcCCCCCCCCCcEE
Q 043214 176 --------------RSC----LQSESRRARRLCERLKKEKKILVILDNIWASLD---------FEKVGIPFGDNHKGCKV 228 (793)
Q Consensus 176 --------------~~~----~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~---------~~~l~~~~~~~~~gs~I 228 (793)
... ..........+.+.....++++|||||++.... +..+.... +..++.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~ 167 (350)
T 2qen_A 89 QKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLPNLKI 167 (350)
T ss_dssp HHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCTTEEE
T ss_pred HhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcCCeEE
Confidence 000 011222333344433322379999999987543 22222111 11247789
Q ss_pred EEeecCCC--------------CCCCCC--------CChh----------------hHHHHHHHHHHhCCCchHHHHHHH
Q 043214 229 LMTARNPD--------------ISGDYA--------ENED----------------LQSIAKDVAKACGCLPIAIVTIAR 270 (793)
Q Consensus 229 ivTTR~~~--------------~~~~~~--------~~~~----------------~~~~~~~i~~~c~GlPLai~~~g~ 270 (793)
|+|++... ..+... ...+ -.+.+..++..|+|.|+++..++.
T Consensus 168 il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~ 247 (350)
T 2qen_A 168 ILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGV 247 (350)
T ss_dssp EEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99976531 000000 0001 123466789999999999999887
Q ss_pred HHcc-CChHHHH-HHHHHHcCCCCCCCCCCchhhhhhHHHHhhcC---CchhhHHHHHHhccccccccccHHHHHHHHhh
Q 043214 271 ALRN-KSVFEWK-NALQELRRPSGRSFTGVPAEAYSTIELSYNHL---EGEELKSTFLLCSLMVHIQSATIQYLLSYGMG 345 (793)
Q Consensus 271 ~l~~-~~~~~w~-~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~lk~cfl~~s~fp~~~~~~~~~Li~~w~a 345 (793)
.+.. .+...+. ...+ .+...+.-.+..+ ++. .+..+..+|. . ..+...+.....+
T Consensus 248 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~l~~~~~~-~~~~l~~la~--g--~~~~~~l~~~~~~ 307 (350)
T 2qen_A 248 EYLRNGDFGRAMKRTLE---------------VAKGLIMGELEELRRRSPR-YVDILRAIAL--G--YNRWSLIRDYLAV 307 (350)
T ss_dssp HHHHHCCHHHHHHHHHH---------------HHHHHHHHHHHHHHHHCHH-HHHHHHHHHT--T--CCSHHHHHHHHHH
T ss_pred HHhccccHhHHHHHHHH---------------HHHHHHHHHHHHHHhCChh-HHHHHHHHHh--C--CCCHHHHHHHHHH
Confidence 6532 2322221 1111 1111111112222 555 6888888887 2 2455555443322
Q ss_pred ccCCCCcccHHHHHHHHHHHHHHHHHccccccCCCCcceeh-hHHHHHHH
Q 043214 346 LGLFGGIDRIEEAWNRVYMLVNKLKTSCLLLDGHTSEEFSM-HDVVRDVA 394 (793)
Q Consensus 346 eg~i~~~~~~e~~~~~~~~~~~~L~~~sll~~~~~~~~~~m-hdlv~~l~ 394 (793)
. .. ..+..+ ...+++.|.+.+++...+ +.|.+ |.+++.+.
T Consensus 308 ~-~~--~~~~~~----~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 308 K-GT--KIPEPR----LYALLENLKKMNWIVEED--NTYKIADPVVATVL 348 (350)
T ss_dssp T-TC--CCCHHH----HHHHHHHHHHTTSEEEET--TEEEESSHHHHHHH
T ss_pred H-hC--CCCHHH----HHHHHHHHHhCCCEEecC--CEEEEecHHHHHHH
Confidence 1 00 111122 234788899999997542 34554 56666543
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=1.9e-07 Score=100.36 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCcccE
Q 043214 444 CPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEI 520 (793)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~ 520 (793)
+..++.+.+... .. .++...|.++ +|+.+.+..+ ++.++ ..|.+ .+|+.+.+.. .+.. ...+.++.+|+.
T Consensus 112 ~~~l~~i~ip~~-i~--~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK--SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC--EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC--EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 455666666542 22 5666667775 6888888765 55444 34444 4688888876 3443 466788888999
Q ss_pred EEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecccc
Q 043214 521 LSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYT 574 (793)
Q Consensus 521 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~ 574 (793)
+++..++++.+|...-...+|+.+.+..+ +..++...+..+++|+.+.+..+
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred eecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence 99888888888876555788888888743 56777777888888888887654
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=6.1e-09 Score=109.56 Aligned_cols=158 Identities=19% Similarity=0.146 Sum_probs=89.4
Q ss_pred CCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCccc----CCC--cccc---
Q 043214 444 CPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVF----GDV--SIIG--- 513 (793)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~----~~~--~~i~--- 513 (793)
|++|+.+.+.. ... .+++..|.+|++|+.|++.++.+..++ ..|..+.++.++.+..... ..+ ..+.
T Consensus 100 ~~~L~~l~L~~-~i~--~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK--NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCC--EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-ccc--chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 67777777766 444 667777777777777777777665433 3445555555554433110 000 0000
Q ss_pred -----------------------------------------------cCCcccEEEecCCCCcccChh-cccCCCCCEEe
Q 043214 514 -----------------------------------------------ELKTLEILSFQGSNIEEFPRE-IGQLTRLRLLN 545 (793)
Q Consensus 514 -----------------------------------------------~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 545 (793)
.+++|+.+++.+|+++.+|.. +..+++|+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 155666666666666666553 56666666666
Q ss_pred cCCCcCccccChhhhcCCCCcc-eeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc
Q 043214 546 LAYCNLLKVIPSNVLSSLSRLE-ELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL 618 (793)
Q Consensus 546 l~~~~~~~~~p~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~ 618 (793)
+.++ +..++...+..+++|+ .+.+.. .+.. ++ -..+..+++|+.|.+..+.+..++...
T Consensus 257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~----------~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 257 LPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTA-IE----------FGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEEEECT-TCCE-EC----------TTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred CCcc--cceehHHHhhCChhccEEEEEcc-cceE-Ec----------hhhhhCCccCCEEEeCCCccCccchhh
Confidence 6654 4556666666666666 666654 2211 11 135566666666666666666555543
No 148
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=6.4e-08 Score=102.95 Aligned_cols=242 Identities=13% Similarity=0.097 Sum_probs=131.5
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh----ceecccc--ccCC--------------
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----ISFLMRS--CLQS-------------- 181 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq~~~~~--~~~~-------------- 181 (793)
...++||+.+++.+.+ +.. +++.|+|++|+|||||++++.+.... +...... ...+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 87 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINK 87 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHH
Confidence 3568999999999999 765 69999999999999999999886533 1111000 0000
Q ss_pred --------------------------------hHHHHHHHHHHHhc-C-CeEEEEEeCCCccc-----CcchhcCCCCCC
Q 043214 182 --------------------------------ESRRARRLCERLKK-E-KKILVILDNIWASL-----DFEKVGIPFGDN 222 (793)
Q Consensus 182 --------------------------------~~~~~~~l~~~l~~-~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~ 222 (793)
.......+.+.+.. . ++++|||||++... +|..+...+.+.
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~ 167 (357)
T 2fna_A 88 LVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDN 167 (357)
T ss_dssp HHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHH
T ss_pred HhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHc
Confidence 00112334444432 1 38999999997742 232221222122
Q ss_pred CCCcEEEEeecCCC--------------CCCCC--------CCChhhHHH--------------HHHHHHHhCCCchHHH
Q 043214 223 HKGCKVLMTARNPD--------------ISGDY--------AENEDLQSI--------------AKDVAKACGCLPIAIV 266 (793)
Q Consensus 223 ~~gs~IivTTR~~~--------------~~~~~--------~~~~~~~~~--------------~~~i~~~c~GlPLai~ 266 (793)
.++.++|+|+|... ..+.. -...+..++ ...|+..|+|.|+++.
T Consensus 168 ~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~~l~ 247 (357)
T 2fna_A 168 LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLT 247 (357)
T ss_dssp CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHHHHH
T ss_pred CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHHH
Confidence 24678999998642 00000 001111111 1578999999999999
Q ss_pred HHHHHHcc-CChHHHHH-HHHHHcCCCCCCCCCCchhhhhhHH-HHhh--cCCchhhHHHHHHhccccccccccHHHHHH
Q 043214 267 TIARALRN-KSVFEWKN-ALQELRRPSGRSFTGVPAEAYSTIE-LSYN--HLEGEELKSTFLLCSLMVHIQSATIQYLLS 341 (793)
Q Consensus 267 ~~g~~l~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~lk~cfl~~s~fp~~~~~~~~~Li~ 341 (793)
.++..+.. .+...|.. +.+.. ...+...+. +.+. .+++. .+..+..+|. . . +...+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~--g--~-~~~~l~~ 310 (357)
T 2fna_A 248 YFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSK--C--G-KWSDVKR 310 (357)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT--C--B-CHHHHHH
T ss_pred HHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHc--C--C-CHHHHHH
Confidence 99887653 23333321 11110 011111121 1111 56666 7888888887 2 2 4444432
Q ss_pred HHh-hccCCCCcccHHHHHHHHHHHHHHHHHccccccCCCCccee-hhHHHHHH
Q 043214 342 YGM-GLGLFGGIDRIEEAWNRVYMLVNKLKTSCLLLDGHTSEEFS-MHDVVRDV 393 (793)
Q Consensus 342 ~w~-aeg~i~~~~~~e~~~~~~~~~~~~L~~~sll~~~~~~~~~~-mhdlv~~l 393 (793)
..- ..|. .-+.. ....+++.|.+.+++...+ +.|. .|+++++.
T Consensus 311 ~~~~~~g~---~~~~~----~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 311 ALELEEGI---EISDS----EIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHCS---CCCHH----HHHHHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred HHHHhcCC---CCCHH----HHHHHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 210 1120 00111 2334788899999987643 4455 46777764
No 149
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.79 E-value=1.9e-08 Score=109.52 Aligned_cols=237 Identities=13% Similarity=0.031 Sum_probs=127.4
Q ss_pred ccccccHHHHHHHHHHh-C----C--CCceEEEE--EecCCChHHHHHHHHHhhhhh--------c---eec--------
Q 043214 123 EAFESRMSTLNDVLNAL-N----N--PNVNMIGV--YGMAGVGKTKLVKEAPRLAKK--------I---SFL-------- 174 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~--------f---q~~-------- 174 (793)
..++||+.+++++.+++ . . ...+.+.| +|++|+||||||+++++.... + .+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999888 3 2 24456666 999999999999999986531 1 011
Q ss_pred -----------ccc--ccCChHHHHHHHHHHHh-cCCeEEEEEeCCCcccC--------cchhcCCCCC-C--C--CCcE
Q 043214 175 -----------MRS--CLQSESRRARRLCERLK-KEKKILVILDNIWASLD--------FEKVGIPFGD-N--H--KGCK 227 (793)
Q Consensus 175 -----------~~~--~~~~~~~~~~~l~~~l~-~~kr~LlVLDdv~~~~~--------~~~l~~~~~~-~--~--~gs~ 227 (793)
... ...+.......+.+.+. .+++++|||||++.... +..+...+.. . + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 000 01122334455555554 24789999999987532 2222121111 1 2 3445
Q ss_pred EEEeecCCC--------------CCC-----CCCCChh------------------hHHHHHHHHHHhC------CCchH
Q 043214 228 VLMTARNPD--------------ISG-----DYAENED------------------LQSIAKDVAKACG------CLPIA 264 (793)
Q Consensus 228 IivTTR~~~--------------~~~-----~~~~~~~------------------~~~~~~~i~~~c~------GlPLa 264 (793)
||+||+... ... ..-...+ -.+....|++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 888886432 000 0000011 1234567889999 99976
Q ss_pred HHHHHHHH-c-----cC---ChHHHHHHHHHHcCCCCCCCCCCchhhhhhHHHHhhcCCchhhHHHHHHhcccc--cccc
Q 043214 265 IVTIARAL-R-----NK---SVFEWKNALQELRRPSGRSFTGVPAEAYSTIELSYNHLEGEELKSTFLLCSLMV--HIQS 333 (793)
Q Consensus 265 i~~~g~~l-~-----~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~lk~cfl~~s~fp--~~~~ 333 (793)
+..+.... . +. +.+.+..+...... ...+.-++..||.+ .+.++..++.+. .+..
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCC
Confidence 55544321 1 11 33444444333110 11223345778887 688888788654 2235
Q ss_pred ccHHHHHHHHh--h-ccCCCCcccHHHHHHHHHHHHHHHHHcccccc
Q 043214 334 ATIQYLLSYGM--G-LGLFGGIDRIEEAWNRVYMLVNKLKTSCLLLD 377 (793)
Q Consensus 334 ~~~~~Li~~w~--a-eg~i~~~~~~e~~~~~~~~~~~~L~~~sll~~ 377 (793)
++...+...+. + .-.-...-+.. ....+++.|...+++..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYT----QYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHH----HHHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHhCCCEEe
Confidence 56665554442 2 11100111111 23347888999999864
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=2.1e-07 Score=100.07 Aligned_cols=235 Identities=11% Similarity=0.102 Sum_probs=155.8
Q ss_pred CCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccCC-CcccccCCcccEEE
Q 043214 445 PQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFGD-VSIIGELKTLEILS 522 (793)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~ 522 (793)
.+|+.+.+..+ .. .++...|.++ .|+.+.+.. .+..++ ..|.+|.+|+.+++..+.+.. +.......+|+.+.
T Consensus 135 ~~L~~i~l~~~-i~--~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEG-LK--SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTT-CC--EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred CCccEEEeCCC-cc--EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence 47888888654 33 6777777775 688888876 555544 568889999999999888777 43333368899999
Q ss_pred ecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCC
Q 043214 523 FQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYL 601 (793)
Q Consensus 523 l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L 601 (793)
+.. +++.++. .+.++++|+.+.+..+ +..++...+.. .+|+.+.+..+ +. .++ -..+..+++|
T Consensus 210 lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~-~I~----------~~aF~~c~~L 273 (401)
T 4fdw_A 210 LPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT-NIA----------SRAFYYCPEL 273 (401)
T ss_dssp CCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC-EEC----------TTTTTTCTTC
T ss_pred eCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc-EEC----------hhHhhCCCCC
Confidence 974 4776655 4778899999999763 56777776666 78999888433 21 111 1467888999
Q ss_pred cEEEEEeccCC-----ccCcccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEecccc
Q 043214 602 TNLEIQIQDAN-----VLPKGLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 602 ~~L~i~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 676 (793)
+.+.+..+... .++... +..+++|+.+.+.. ....++...+..+++|+.+.|..+
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~a------------------F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYC------------------LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTT------------------TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred CEEEeCCccccCCcccEECHHH------------------hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence 99999876554 233322 23456666666653 355566666666788999988654
Q ss_pred Cccccc-cccccCCCCCCCceEeecCCCcceeccccCccCCccCc-ccceeeccc
Q 043214 677 GVKNIV-YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFR-ALESLSLSN 729 (793)
Q Consensus 677 ~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~~ 729 (793)
++.+. ..+ .++ +|+.+.+.++.- ..++. ....+++ +++.|.+-.
T Consensus 334 -l~~I~~~aF--~~~-~L~~l~l~~n~~-~~l~~----~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 334 -VTQINFSAF--NNT-GIKEVKVEGTTP-PQVFE----KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -CCEECTTSS--SSS-CCCEEEECCSSC-CBCCC----SSCCCSCTTCCEEEECG
T ss_pred -ccEEcHHhC--CCC-CCCEEEEcCCCC-ccccc----ccccCCCCCccEEEeCH
Confidence 33433 233 566 899999988742 22211 1233443 677887764
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=5.1e-09 Score=111.52 Aligned_cols=134 Identities=15% Similarity=0.178 Sum_probs=58.8
Q ss_pred CcceEEEecCCcCCC--CChhhhcccCCcEEEcCCcccCC--Cccc-----ccCCcccEEEecCCCCcc-----cChhcc
Q 043214 471 TELRVLDFVAMHLPS--LPSSLCLLSNLQTLCLDYGVFGD--VSII-----GELKTLEILSFQGSNIEE-----FPREIG 536 (793)
Q Consensus 471 ~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~ 536 (793)
++|+.|+|++|.+.. +..-...+.+|++|+|++|.+.. ...+ ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554431 11112233445555555555443 1222 123455555555555542 333344
Q ss_pred cCCCCCEEecCCCcCccc----cChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCC
Q 043214 537 QLTRLRLLNLAYCNLLKV----IPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDAN 612 (793)
Q Consensus 537 ~L~~L~~L~l~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~ 612 (793)
.+++|++|++++|..... ++.. +...++|++|++++|.+.... .......+...++|+.|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g-------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA-------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 555555555555543211 1221 344455555555555443211 0112233444555666666555543
No 152
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.64 E-value=4.8e-08 Score=97.72 Aligned_cols=116 Identities=14% Similarity=0.234 Sum_probs=74.3
Q ss_pred CcccccccHHHHHHHHHHhCCCC-ceEEEEEecCCChHHHHHHHHHhhhhh-c----------------------e-ecc
Q 043214 121 CYEAFESRMSTLNDVLNALNNPN-VNMIGVYGMAGVGKTKLVKEAPRLAKK-I----------------------S-FLM 175 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-f----------------------q-~~~ 175 (793)
.+..++||+..++.+..++..+. ...+.|+|.+|+||||||+.+++.... + + +..
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 35568999999999999887433 358999999999999999999886532 0 0 000
Q ss_pred ccccCChHHHHHHHHHHHh----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 176 RSCLQSESRRARRLCERLK----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 176 ~~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.............+.+.+. .+++.+||+||++.. ..++.+...+.....+.++|+||+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0011111222333333322 235799999999774 345555444433456788999997654
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.57 E-value=1.3e-07 Score=93.01 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=74.9
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh--c-----eeccccccCChHHHHHHHHHHHh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--I-----SFLMRSCLQSESRRARRLCERLK 194 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--f-----q~~~~~~~~~~~~~~~~l~~~l~ 194 (793)
+..++||+..++.+.+++.......+.|+|.+|+||||+|+.+++.... + .+... ...........+.....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS-DERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT-CTTCHHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc-cccChHHHHHHHHHHhc
Confidence 4568899999999999998666556999999999999999999886532 1 12111 11122222233333332
Q ss_pred -----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 195 -----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 195 -----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.+++.+||+||++... ..+.+...+.....+.++|+||+...
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 95 TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 2468999999998762 33444333333456788999988654
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.5e-07 Score=99.74 Aligned_cols=88 Identities=19% Similarity=0.106 Sum_probs=42.2
Q ss_pred ccChhhhcCCCcceEEEecC-CcCCCCC-hhhhcccCCcEEEcCCcccCC--CcccccCCcccEEEecCCCCcccChhcc
Q 043214 461 QIPNNFFIGMTELRVLDFVA-MHLPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGELKTLEILSFQGSNIEEFPREIG 536 (793)
Q Consensus 461 ~~~~~~~~~~~~Lr~L~l~~-~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~ 536 (793)
.+|. +..+++|+.|+|++ |.+..+| ..|+.|.+|++|+|++|.+.. +..|.++++|++|+|++|++..+|..+.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 4444 34455555555553 5555443 344555555555555555444 2334555555555555555555544333
Q ss_pred cCCCCCEEecCCCc
Q 043214 537 QLTRLRLLNLAYCN 550 (793)
Q Consensus 537 ~L~~L~~L~l~~~~ 550 (793)
....|++|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 22225555555443
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=1.6e-08 Score=107.67 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=114.8
Q ss_pred hhhccCCeEEecCCCcccc-----cccC--CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-----C
Q 043214 420 EALKRCPAISLHNCKIDEL-----LEGL--ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-----P 487 (793)
Q Consensus 420 ~~~~~~~~l~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-----p 487 (793)
.....++.+++++|.+... .... .+++|+.|++++|.+.. .-...++..+++|+.|++++|.+... .
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 3456788999999988432 2221 34799999999997653 22233445567899999999998732 2
Q ss_pred hhh-hcccCCcEEEcCCcccCC--C----cccccCCcccEEEecCCCCcc-----cChhcccCCCCCEEecCCCcCccc-
Q 043214 488 SSL-CLLSNLQTLCLDYGVFGD--V----SIIGELKTLEILSFQGSNIEE-----FPREIGQLTRLRLLNLAYCNLLKV- 554 (793)
Q Consensus 488 ~~i-~~l~~L~~L~L~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~- 554 (793)
..+ ...++|++|+|++|.+.. . ..+...++|++|++++|.+.. ++..+...++|++|++++|.....
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 222 246789999999998765 2 345778999999999999873 456677889999999999976432
Q ss_pred ---cChhhhcCCCCcceeeccccccce
Q 043214 555 ---IPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 555 ---~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
++.. +...++|++|++++|.+..
T Consensus 228 ~~~l~~~-L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ALALARA-AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHH-HHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHH-HHhCCCCCEEeccCCCCCH
Confidence 2322 5567899999999998753
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=3.1e-06 Score=91.20 Aligned_cols=299 Identities=12% Similarity=0.131 Sum_probs=130.1
Q ss_pred CCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEEcCCcccC-CCcccccCCcccE
Q 043214 443 ECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLCLDYGVFG-DVSIIGELKTLEI 520 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~-~~~~i~~l~~L~~ 520 (793)
.|.+|+.+.+... .. .+.+..|.+|.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+-.. ....+.+...+..
T Consensus 69 ~c~~L~~i~lp~~-i~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR--EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECCTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeCCC-cc--CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 6777888777532 22 666777778888888877644 34332 34556666666555432100 0122222222111
Q ss_pred EEecCCCCcccC-hhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccceeecccccccCcccHHHhcCCC
Q 043214 521 LSFQGSNIEEFP-REIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEWEIEGLNNVRSKASLHELKQLS 599 (793)
Q Consensus 521 L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 599 (793)
.... .+..+. ..+.++.+|+.+.+..+ ...++...+..+.+|+.+.+..+.. .+. -..+..+.
T Consensus 145 ~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~--~I~----------~~~F~~~~ 208 (394)
T 4fs7_A 145 TIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLK--IIR----------DYCFAECI 208 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCC--EEC----------TTTTTTCT
T ss_pred ccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCce--EeC----------chhhcccc
Confidence 1111 111121 23455566666666532 2345555455566666665543311 111 01233333
Q ss_pred CCcEEEEEeccCCccCcccccccccEEEEEecC---ccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEecccc
Q 043214 600 YLTNLEIQIQDANVLPKGLLSKKLKRYKIFIGD---EWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMR 676 (793)
Q Consensus 600 ~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~ 676 (793)
.|+.+.+..+....-.......+|+.+.+.... .......+..++.+.+..+ ...++...+..+++++.+.+....
T Consensus 209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE
T ss_pred ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee
Confidence 333333221111000000111334444332110 0011233445555555432 122222233334555555443321
Q ss_pred CccccccccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccccCCCCCeeeecc
Q 043214 677 GVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKVKS 756 (793)
Q Consensus 677 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 756 (793)
. ....+ ..+.+|+.+.+.+. ++.+++. ....+.+|+.+.|.+ +++.+....| ..+.+|+.+.+..
T Consensus 288 i---~~~~F--~~~~~L~~i~l~~~--i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~aF--~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 288 V---PEKTF--YGCSSLTEVKLLDS--VKFIGEE----AFESCTSLVSIDLPY--LVEEIGKRSF--RGCTSLSNINFPL 352 (394)
T ss_dssp E---CTTTT--TTCTTCCEEEECTT--CCEECTT----TTTTCTTCCEECCCT--TCCEECTTTT--TTCTTCCEECCCT
T ss_pred e---ccccc--cccccccccccccc--cceechh----hhcCCCCCCEEEeCC--cccEEhHHhc--cCCCCCCEEEECc
Confidence 0 00112 44566666666432 4444221 233455666666642 3555532222 2456666666643
Q ss_pred CCCCCcccchHHhcCCCCCcEEEe
Q 043214 757 CDKLSFIFSFSVARSLPQLQTIEV 780 (793)
Q Consensus 757 C~~L~~l~~~~~~~~l~~L~~L~i 780 (793)
+++.++. .-+.+|++|+++++
T Consensus 353 --~l~~I~~-~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 353 --SLRKIGA-NAFQGCINLKKVEL 373 (394)
T ss_dssp --TCCEECT-TTBTTCTTCCEEEE
T ss_pred --cccEehH-HHhhCCCCCCEEEE
Confidence 2555543 23456677777766
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=2.2e-07 Score=98.34 Aligned_cols=97 Identities=23% Similarity=0.201 Sum_probs=42.1
Q ss_pred EecCC-cCCCCChhhhcccCCcEEEcCC-cccCC-C-cccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcC
Q 043214 477 DFVAM-HLPSLPSSLCLLSNLQTLCLDY-GVFGD-V-SIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNL 551 (793)
Q Consensus 477 ~l~~~-~~~~lp~~i~~l~~L~~L~L~~-~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 551 (793)
+.+++ .++.+|. +..+.+|++|+|++ |.+.. + ..++++.+|++|+|++|+++.+|+ .+.+|++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 34443 4444444 44444444444443 44444 2 334444444444444444444332 234444444444444433
Q ss_pred ccccChhhhcCCCCcceeecccccc
Q 043214 552 LKVIPSNVLSSLSRLEELYMGYTFV 576 (793)
Q Consensus 552 ~~~~p~~~i~~l~~L~~L~l~~~~~ 576 (793)
..+|+..+..++ |+.|++.+|.+
T Consensus 93 -~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 93 -ESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp -SCCCSTTTCSCC-CCEEECCSSCC
T ss_pred -ceeCHHHcccCC-ceEEEeeCCCc
Confidence 233333222222 44444444443
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=2.2e-07 Score=98.02 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=97.7
Q ss_pred CCCCccEEEccccCcc---c----cccChhhhcCCCcceEEEecCCcCCCCChhhhcccCCcEEEcCCcccCC--Ccccc
Q 043214 443 ECPQLKLLHMATEDLS---V----QQIPNNFFIGMTELRVLDFVAMHLPSLPSSLCLLSNLQTLCLDYGVFGD--VSIIG 513 (793)
Q Consensus 443 ~~~~L~~L~l~~~~~~---~----~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~ 513 (793)
.+++|+.|.+...... . ..-...++..+++|+.|+++++.-..+|. + .+++|+.|+|..|.+.. ...++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 4677888877543211 0 01123456778899999998874234444 3 37889999998887654 44444
Q ss_pred --cCCcccEEEecCC--C------CcccChhc--ccCCCCCEEecCCCcCccccChhhh--cCCCCcceeecccccccee
Q 043214 514 --ELKTLEILSFQGS--N------IEEFPREI--GQLTRLRLLNLAYCNLLKVIPSNVL--SSLSRLEELYMGYTFVEWE 579 (793)
Q Consensus 514 --~l~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~~~~~p~~~i--~~l~~L~~L~l~~~~~~~~ 579 (793)
.+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+..+. ..+++|++|+++.|.+...
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 6888888888531 1 22222222 3578899998888766543332211 2577888888887765432
Q ss_pred ecccccccCcccHHHhcCCCCCcEEEEEeccCC
Q 043214 580 IEGLNNVRSKASLHELKQLSYLTNLEIQIQDAN 612 (793)
Q Consensus 580 ~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~ 612 (793)
.. ......+.++++|+.|+++.|.+.
T Consensus 295 G~-------~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 295 GA-------RLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HH-------HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HH-------HHHHhhcccCCcceEEECCCCcCC
Confidence 11 112234456788888888877654
No 159
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.39 E-value=2e-05 Score=84.53 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=71.3
Q ss_pred ccccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhh-----------hh--ceeccc---------
Q 043214 123 EAFESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLA-----------KK--ISFLMR--------- 176 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~-----------~~--fq~~~~--------- 176 (793)
..++||+++++++.+++. ....+.+.|+|++|+||||||+.+++.. .. +.+...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999998887664 4456799999999999999999999864 22 111100
Q ss_pred --------------cccCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC--cchh-cCCCCCCCCCcEEEEeecCC
Q 043214 177 --------------SCLQSESRRARRLCERLKKEKKILVILDNIWASLD--FEKV-GIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 177 --------------~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~~~--~~~l-~~~~~~~~~gs~IivTTR~~ 235 (793)
....+.......+.+.+.. ++.+|||||++.... +..+ ...+.....+.+||+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 0011123345556666665 445999999987532 1111 11111111678899999876
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=2.7e-05 Score=83.74 Aligned_cols=313 Identities=14% Similarity=0.113 Sum_probs=180.7
Q ss_pred ccCCeEEecCCCccccccc--CCCCCccEEEccccCccccccChhhhcCCCcceEEEecCCcCCCC-ChhhhcccCCcEE
Q 043214 423 KRCPAISLHNCKIDELLEG--LECPQLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMHLPSL-PSSLCLLSNLQTL 499 (793)
Q Consensus 423 ~~~~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L 499 (793)
.+++.+.+.. .+..+... ..|++|+.+.+..+ .. .++...|.++..|+.+.+..+ +..+ ...+..+..+...
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK--MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce--EccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 4566666653 35555443 37899999999654 22 677788899999988776544 2222 2334444443333
Q ss_pred EcCCcccCCCcccccCCcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccccccce
Q 043214 500 CLDYGVFGDVSIIGELKTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGYTFVEW 578 (793)
Q Consensus 500 ~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~ 578 (793)
............+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++...+..+..|+.+.+..+...
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~- 221 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYY- 221 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred cCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceE-
Confidence 333322222456778888999988654 444544 4677888888888753 45667666788888888876544321
Q ss_pred eecccccccCcccHHHhcCCCCCcEEEEEeccCCccCccc--ccccccEEEEEecC---ccCcccccCCceEEEeecCCc
Q 043214 579 EIEGLNNVRSKASLHELKQLSYLTNLEIQIQDANVLPKGL--LSKKLKRYKIFIGD---EWNWSDQLQNSRILKLKLNNS 653 (793)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~~~~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~ 653 (793)
+. .......+|+.+.+.. ....++... .+..++.+.+.... .......+..++.+.....
T Consensus 222 -i~-----------~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~-- 286 (394)
T 4fs7_A 222 -LG-----------DFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV-- 286 (394)
T ss_dssp -EC-----------TTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS--
T ss_pred -ee-----------hhhcccCCCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCce--
Confidence 10 1122335666666542 222222222 23556665553221 1112344556666655332
Q ss_pred ccchhhHHHhhcCCcEEEeccccCcccccc-ccccCCCCCCCceEeecCCCcceeccccCccCCccCcccceeecccccc
Q 043214 654 TWLKDDVFMQMKGIEELYLDEMRGVKNIVY-DLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLIN 732 (793)
Q Consensus 654 ~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 732 (793)
.++...+..+.+|+.+.+.+. ++.++. .+ .++.+|+.+.|.+ .++.+.+. ....+.+|+.+.|.. +
T Consensus 287 -~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF--~~c~~L~~i~lp~--~v~~I~~~----aF~~c~~L~~i~lp~--~ 353 (394)
T 4fs7_A 287 -IVPEKTFYGCSSLTEVKLLDS--VKFIGEEAF--ESCTSLVSIDLPY--LVEEIGKR----SFRGCTSLSNINFPL--S 353 (394)
T ss_dssp -EECTTTTTTCTTCCEEEECTT--CCEECTTTT--TTCTTCCEECCCT--TCCEECTT----TTTTCTTCCEECCCT--T
T ss_pred -eeccccccccccccccccccc--cceechhhh--cCCCCCCEEEeCC--cccEEhHH----hccCCCCCCEEEECc--c
Confidence 244444555789999988653 333332 23 6788999998864 35555332 345678899999864 4
Q ss_pred cccccccccccccCCCCCeeeeccCCCCCcccchHHhcCCCCCcEE
Q 043214 733 LEKICHGKLKAESFCKLTTLKVKSCDKLSFIFSFSVARSLPQLQTI 778 (793)
Q Consensus 733 l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L 778 (793)
++.+.... ...+++|+++++... ++.+. ..+.++++|+.+
T Consensus 354 l~~I~~~a--F~~C~~L~~i~lp~~--~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 354 LRKIGANA--FQGCINLKKVELPKR--LEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp CCEECTTT--BTTCTTCCEEEEEGG--GGGGG--GGBCTTCEEEEE
T ss_pred ccEehHHH--hhCCCCCCEEEECCC--CEEhh--heecCCCCCcEE
Confidence 66665333 346788999988643 33332 124556666554
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.28 E-value=2.2e-05 Score=84.16 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=71.3
Q ss_pred cccccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhhh---------h-c-eeccc----------
Q 043214 122 YEAFESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLAK---------K-I-SFLMR---------- 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------~-f-q~~~~---------- 176 (793)
+..++||+.+++++..++. ......+.|+|++|+||||+|+.+++... . | .+...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3568999999999999884 34567899999999999999999998652 1 1 11100
Q ss_pred -----------cccCChHHHHHHHHHHHh-cCCeEEEEEeCCCcccCc----chh---cCCCCCC--CCCcEEEEeecCC
Q 043214 177 -----------SCLQSESRRARRLCERLK-KEKKILVILDNIWASLDF----EKV---GIPFGDN--HKGCKVLMTARNP 235 (793)
Q Consensus 177 -----------~~~~~~~~~~~~l~~~l~-~~kr~LlVLDdv~~~~~~----~~l---~~~~~~~--~~gs~IivTTR~~ 235 (793)
....+..+....+.+.+. .+++.+|||||++..... +.+ ....... ..+..+|.||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 011123334555666664 346899999999875321 222 1111111 3456788888766
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=3.1e-06 Score=88.43 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=74.0
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------c-eeccccccCChHHHHHHHHHHHh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------I-SFLMRSCLQSESRRARRLCERLK 194 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------f-q~~~~~~~~~~~~~~~~l~~~l~ 194 (793)
+..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.... + .+... +... ......+.+.+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~-~~~~-~~~i~~~~~~~~ 97 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS-DDRG-IDVVRNQIKHFA 97 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT-SCCS-HHHHHTHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc-cccC-hHHHHHHHHHHH
Confidence 4568899999999999988766666999999999999999999987522 1 11111 1112 222222333322
Q ss_pred -------cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 195 -------KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 195 -------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.+++.+||+||++.. ..++.+...+.....++++|+||+...
T Consensus 98 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 98 QKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred hccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 346899999999875 234444333333345788999887654
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=6e-07 Score=94.66 Aligned_cols=177 Identities=13% Similarity=0.006 Sum_probs=87.5
Q ss_pred HhcCCCCCcEEEEEeccCCccCc-ccccccccEEEEEecCccCcccccCCceEEEeecCCcccchhhHHHhhcCCcEEEe
Q 043214 594 ELKQLSYLTNLEIQIQDANVLPK-GLLSKKLKRYKIFIGDEWNWSDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYL 672 (793)
Q Consensus 594 ~l~~l~~L~~L~i~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L 672 (793)
.+..+++|+.|.|.........- ++. .+....+...+|+|++|.|+++....++. + . +++|++|.|
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~----------~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~-~~~L~~L~L 200 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIE----------QVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-P-RPNLKSLEI 200 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCB----------CCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-B-CTTCSEEEE
T ss_pred hhhhcchhhheeecCcchhhccccccc----------ccCHHHHHhcCCCCcEEEEeCCCCceecc-c-c-CCCCcEEEE
Confidence 34567799999886543221000 000 00000123455667777776653334443 1 1 467777777
Q ss_pred ccccCccccccccccCCCCCCCceEeecCCCc--ce--eccccCccCCccCcccceeecccccccccccccccccccCCC
Q 043214 673 DEMRGVKNIVYDLDREGFPKLKHPQIQNNPYF--LY--VIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAESFCK 748 (793)
Q Consensus 673 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 748 (793)
..|....+....+....+|+|+.|+|+.+.+. .. +.+-........||+|+.|.+.+|.--..........+.+|+
T Consensus 201 ~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~ 280 (362)
T 2ra8_A 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280 (362)
T ss_dssp ECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG
T ss_pred ecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC
Confidence 76654333333332235778888777532111 00 000000112245778888888765322111111122345778
Q ss_pred CCeeeeccCCCCCcccch---HHhcCCCCCcEEEecccc
Q 043214 749 LTTLKVKSCDKLSFIFSF---SVARSLPQLQTIEVIACK 784 (793)
Q Consensus 749 L~~L~l~~C~~L~~l~~~---~~~~~l~~L~~L~i~~C~ 784 (793)
|++|+|+.| .+.+.... .+++++++|+.|++++|.
T Consensus 281 L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 281 LETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 888888665 45552111 123456778888887774
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.22 E-value=1.4e-05 Score=85.65 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=71.7
Q ss_pred cccccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhhh------h--ce-----------------
Q 043214 122 YEAFESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLAK------K--IS----------------- 172 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~--fq----------------- 172 (793)
+..++||+.+++.+.+++. ......+.|+|++|+||||||+.+++... . +.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999887 44567899999999999999999998652 1 10
Q ss_pred --eccc--cccCChHHHHHHHHHHHhc-CCeEEEEEeCCCccc------CcchhcCCCCC-CCCCcEEEEeecCC
Q 043214 173 --FLMR--SCLQSESRRARRLCERLKK-EKKILVILDNIWASL------DFEKVGIPFGD-NHKGCKVLMTARNP 235 (793)
Q Consensus 173 --~~~~--~~~~~~~~~~~~l~~~l~~-~kr~LlVLDdv~~~~------~~~~l~~~~~~-~~~gs~IivTTR~~ 235 (793)
++.. ....+..+....+.+.+.. +++.+||||+++... .+..+...+.. ...+..+|+||+..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 0000 0111233445556666653 348999999998742 12222111111 23355678888765
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=5e-07 Score=83.46 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=49.9
Q ss_pred CCcEEEeccccCccccccccccCCCCCCCceEeecCCCcceeccccCccCCc--cCcccceeeccccccccccccccccc
Q 043214 666 GIEELYLDEMRGVKNIVYDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRD--AFRALESLSLSNLINLEKICHGKLKA 743 (793)
Q Consensus 666 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~ 743 (793)
+|++|++++|.....-...+ ..+++|+.|+|++|..++.- +....... ..++|++|+|++|+++++-. ....
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~--gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM--EGLQYVEKIRLCKCHYIEDG--CLERLSQLENLQKSMLEMEIISCGNVTDKG--IIAL 135 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG--TTCSCCCEEEEESCTTCCHH--HHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHG
T ss_pred eEeEEeCcCCCccHHHHHHh--cCCCCCCEEEeCCCCccCHH--HHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHH
Confidence 57777777776322223333 56777777777777655321 00000110 12467777777776666532 1123
Q ss_pred ccCCCCCeeeeccCCCCCc
Q 043214 744 ESFCKLTTLKVKSCDKLSF 762 (793)
Q Consensus 744 ~~~~~L~~L~l~~C~~L~~ 762 (793)
..+++|++|+|++|+++++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 3567777777777776665
No 166
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=4.9e-07 Score=83.48 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCCCceEeecCCCcceeccccCccCCccCcccceeecccccccccccccccccc--cCCCCCeeeeccCCCCCcccchHH
Q 043214 691 PKLKHPQIQNNPYFLYVIDSVKHVPRDAFRALESLSLSNLINLEKICHGKLKAE--SFCKLTTLKVKSCDKLSFIFSFSV 768 (793)
Q Consensus 691 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~C~~L~~l~~~~~ 768 (793)
.+|+.|++++|. +.. ........+++|++|+|++|..+++..-...... ..++|++|+|++|+++++-.- ..
T Consensus 61 ~~L~~LDLs~~~-Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IA 134 (176)
T ss_dssp CCEEEEEEESCC-CCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HH
T ss_pred ceEeEEeCcCCC-ccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HH
Confidence 479999999997 322 1122446899999999999998887531111111 135899999999999998533 23
Q ss_pred hcCCCCCcEEEeccccchhh
Q 043214 769 ARSLPQLQTIEVIACKNMKE 788 (793)
Q Consensus 769 ~~~l~~L~~L~i~~C~~l~~ 788 (793)
+.++++|++|+|++|+.+++
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 56799999999999998875
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.12 E-value=4.4e-06 Score=79.74 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=43.3
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 120 WCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+..++||++.++++.+.+.......+.|+|.+|+||||+|+.+++..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999987666778999999999999999998875
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=3.4e-06 Score=88.28 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=72.6
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------c-eeccccccCChHHHHHHHHHHHh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------I-SFLMRSCLQSESRRARRLCERLK 194 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------f-q~~~~~~~~~~~~~~~~l~~~l~ 194 (793)
+..++|++..++.+.+++..+....+.|+|.+|+||||+|+.+++.... | .+.... ..........+.+...
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 102 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-ERGINVIREKVKEFAR 102 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC-HHHHHTTHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc-cCchHHHHHHHHHHHh
Confidence 5678999999999999888666666999999999999999999987532 1 111100 0000111112222221
Q ss_pred -----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 195 -----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 195 -----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.+++.+||+||++.. ..++.+...+.....++++|+||....
T Consensus 103 ~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 103 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred hCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 146789999999875 334444333333345788999987654
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.02 E-value=5e-05 Score=81.47 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=71.0
Q ss_pred ccccccHHHHHHHHHHhCC----CCce--EEEEEecCCChHHHHHHHHHhhhhh-----c-eec----------------
Q 043214 123 EAFESRMSTLNDVLNALNN----PNVN--MIGVYGMAGVGKTKLVKEAPRLAKK-----I-SFL---------------- 174 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~-----f-q~~---------------- 174 (793)
..++||+.+++.+.+++.. .... .+.|+|.+|+||||||+.+++.... + .+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 5689999999999888762 3334 8999999999999999999887632 1 111
Q ss_pred ---ccc--ccCChHHHHHHHHHHHh-cCCeEEEEEeCCCccc--CcchhcCCCCC-CC---CCcEEEEeecCC
Q 043214 175 ---MRS--CLQSESRRARRLCERLK-KEKKILVILDNIWASL--DFEKVGIPFGD-NH---KGCKVLMTARNP 235 (793)
Q Consensus 175 ---~~~--~~~~~~~~~~~l~~~l~-~~kr~LlVLDdv~~~~--~~~~l~~~~~~-~~---~gs~IivTTR~~ 235 (793)
... ...........+.+.+. .+++.+|||||++... ....+...+.. .. .+..||+||+..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 000 01122333444555543 2467999999998752 23333222211 11 466788888766
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.00 E-value=6.6e-06 Score=85.97 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=55.8
Q ss_pred CcccccccHHHHHHHHHHhC-----CCCceEEEEEecCCChHHHHHHHHHhhhhh-ce-eccccccCChHHHHHHHHHHH
Q 043214 121 CYEAFESRMSTLNDVLNALN-----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-IS-FLMRSCLQSESRRARRLCERL 193 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq-~~~~~~~~~~~~~~~~l~~~l 193 (793)
.+..++|++..++.+...+. ......+.|+|.+|+||||+|+++++.... |. +... .... ...+...+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~-~~~~----~~~l~~~l 84 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP-AIEK----PGDLAAIL 84 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTT-TCCS----HHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc-ccCC----hHHHHHHH
Confidence 35678999988888877765 234467889999999999999999987644 21 1111 1111 12333344
Q ss_pred hc--CCeEEEEEeCCCcc
Q 043214 194 KK--EKKILVILDNIWAS 209 (793)
Q Consensus 194 ~~--~kr~LlVLDdv~~~ 209 (793)
.. .+..+|+|||+...
T Consensus 85 ~~~~~~~~~l~lDEi~~l 102 (324)
T 1hqc_A 85 ANSLEEGDILFIDEIHRL 102 (324)
T ss_dssp TTTCCTTCEEEETTTTSC
T ss_pred HHhccCCCEEEEECCccc
Confidence 32 35679999999875
No 171
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=0.0035 Score=67.03 Aligned_cols=123 Identities=11% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCC-CccEEEccccCccccccChhhhcCCCcceEEEecCCc---CCCCC-hhhhcccCCcEEEcCCcccCC--CcccccC
Q 043214 443 ECP-QLKLLHMATEDLSVQQIPNNFFIGMTELRVLDFVAMH---LPSLP-SSLCLLSNLQTLCLDYGVFGD--VSIIGEL 515 (793)
Q Consensus 443 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~---~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l 515 (793)
.++ .|+++.+... .. .|.+..|.++.+|+.+.+..+. ++.++ ..|..+.+|+.+.+..+ +.. ...+..+
T Consensus 61 ~~~~~L~sI~iP~s-vt--~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-VT--EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TCCSCCCEEEECTT-CC--EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred CCCCcCEEEEECCC-ee--EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 343 4777777543 22 6777778888888888887653 44333 34666777777666543 222 3455667
Q ss_pred CcccEEEecCCCCcccCh-hcccCCCCCEEecCCCcCccccChhhhcCCCCcceeeccc
Q 043214 516 KTLEILSFQGSNIEEFPR-EIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMGY 573 (793)
Q Consensus 516 ~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~ 573 (793)
.+|+.+.+... +..++. .+..+.+|+.+.+..+ +..+....+ ...+|+.+.+..
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF-~~~~l~~i~ip~ 191 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAF-TGTALTQIHIPA 191 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCCCSEEEECT
T ss_pred cccccccccce-eeeecccceecccccccccccce--eeEeccccc-cccceeEEEECC
Confidence 77777777543 344433 3566777777777642 345555433 335677766543
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.81 E-value=2.9e-05 Score=73.48 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=43.1
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 120 WCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+..++||+.+++.+.+.+.......+.|+|.+|+||||+|+.+++..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999987666778999999999999999998875
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.81 E-value=0.00013 Score=75.65 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=72.9
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------c-eecccc--ccCChHHHHHHHHHH
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------I-SFLMRS--CLQSESRRARRLCER 192 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------f-q~~~~~--~~~~~~~~~~~l~~~ 192 (793)
+..++|++..++.+.+++..+....+-++|.+|+||||+|+.+++.... | .+.... ...............
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhc
Confidence 4568899999999999888766666999999999999999999887421 1 221111 111111111221111
Q ss_pred --HhcCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 193 --LKKEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 193 --l~~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+..+++-+||+||+... ...+.+...+.....+.++|+||....
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 11246789999999875 234445444444456788888886554
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.79 E-value=0.00017 Score=72.93 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=51.6
Q ss_pred cccccHHHHHHHHH-------HhC---CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eec--cccccCChH---HHH
Q 043214 124 AFESRMSTLNDVLN-------ALN---NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL--MRSCLQSES---RRA 186 (793)
Q Consensus 124 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~--~~~~~~~~~---~~~ 186 (793)
.++|....+++++. .+. .....-+-|+|.+|+|||++|+++++.... | .+. ......... ...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 113 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAM 113 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHH
Confidence 45666665555444 332 345678999999999999999999987544 2 221 111111222 222
Q ss_pred HHHHHHHhcCCeEEEEEeCCCcc
Q 043214 187 RRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 187 ~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
..+.+.....+..+|+|||+...
T Consensus 114 ~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 114 KKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp HHHHHHHHTSSEEEEEECCHHHH
T ss_pred HHHHHHHHhcCCcEEEEEChhhh
Confidence 33333333346789999998653
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.77 E-value=2.8e-05 Score=79.44 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=58.9
Q ss_pred CcccccccHHHHHHHHHHhCC-------------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc-cc-c--cCC
Q 043214 121 CYEAFESRMSTLNDVLNALNN-------------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM-RS-C--LQS 181 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~-~~-~--~~~ 181 (793)
.+..++|.+..++++.+.+.. ....-+-|+|.+|+||||||+++++.... | .+.. .. . ...
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 94 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGE 94 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccch
Confidence 356788999988888877631 34567999999999999999999987655 2 1111 11 1 111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.......+.+.....+..+|+|||+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAI 122 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECHHHh
Confidence 1233444455554446689999999753
No 176
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=1.7e-05 Score=75.04 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred hcCCCcceEEEecCC-cCC-----CCChhhhcccCCcEEEcCCcccCC--C----cccccCCcccEEEecCCCCcc----
Q 043214 467 FIGMTELRVLDFVAM-HLP-----SLPSSLCLLSNLQTLCLDYGVFGD--V----SIIGELKTLEILSFQGSNIEE---- 530 (793)
Q Consensus 467 ~~~~~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~~---- 530 (793)
+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.. . ..+...++|++|++++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666777777766 554 233444555666667766666544 1 223344566666666666552
Q ss_pred -cChhcccCCCCCEEec--CCCcCccc----cChhhhcCCCCcceeecccccc
Q 043214 531 -FPREIGQLTRLRLLNL--AYCNLLKV----IPSNVLSSLSRLEELYMGYTFV 576 (793)
Q Consensus 531 -lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~ 576 (793)
+...+...+.|++|++ ++|..... +.. .+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 3444555556666666 44443221 111 133345555555555543
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.63 E-value=4.9e-05 Score=81.06 Aligned_cols=115 Identities=15% Similarity=0.250 Sum_probs=70.7
Q ss_pred cccccccHHHHHHHHHHhCCCC-ceEEEEEecCCChHHHHHHHHHhhhhh---c--------------------e-eccc
Q 043214 122 YEAFESRMSTLNDVLNALNNPN-VNMIGVYGMAGVGKTKLVKEAPRLAKK---I--------------------S-FLMR 176 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~---f--------------------q-~~~~ 176 (793)
+..++||+..++.+.+.+..+. ...+.|+|.+|+||||+|+.+.+.... + . +...
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 4568999999999998887444 357889999999999999999876532 0 0 0000
Q ss_pred cccCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 177 SCLQSESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 177 ~~~~~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
.......+....+.+.+. .+++.+||+||+.... .++.+...+.....+..+|++|....
T Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 95 AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp TTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred ccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000011112334444443 2357899999997652 34444333333345677888876554
No 178
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.63 E-value=1.8e-05 Score=78.90 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCCcceEEEecCCcCCCCC---hhhhcccCCcEEEcCCcccCCCcccccCC--cccEEEecCCCC
Q 043214 469 GMTELRVLDFVAMHLPSLP---SSLCLLSNLQTLCLDYGVFGDVSIIGELK--TLEILSFQGSNI 528 (793)
Q Consensus 469 ~~~~Lr~L~l~~~~~~~lp---~~i~~l~~L~~L~L~~~~~~~~~~i~~l~--~L~~L~l~~~~l 528 (793)
.+++|+.|+|++|.+..++ ..+..+++|++|+|++|.+..+..+..+. +|++|++.+|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcC
Confidence 3445555555555544322 33344444444444444444432233222 444444444433
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.60 E-value=0.00064 Score=71.62 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=57.9
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc--ccc--CCh
Q 043214 121 CYEAFESRMSTLNDVLNALN------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR--SCL--QSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~--~~~--~~~ 182 (793)
.+..++|.+..++.+.+.+. ....+.|.|+|.+|+|||+||+++++.... | .+... ... ...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~ 161 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEG 161 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchH
Confidence 45678899998888887663 124568899999999999999999987654 2 22111 000 111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.......+..+|+||++..
T Consensus 162 ~~~~~~~~~~a~~~~~~vl~iDEid~ 187 (357)
T 3d8b_A 162 EKMVRALFAVARCQQPAVIFIDEIDS 187 (357)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCchh
Confidence 23334444444444678999999954
No 180
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=8.4e-05 Score=74.04 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=64.7
Q ss_pred hcccCCcEEEcCCcccCCCc----ccccCCcccEEEecCCCCcccChhcccCC--CCCEEecCCCcCccccCh------h
Q 043214 491 CLLSNLQTLCLDYGVFGDVS----IIGELKTLEILSFQGSNIEEFPREIGQLT--RLRLLNLAYCNLLKVIPS------N 558 (793)
Q Consensus 491 ~~l~~L~~L~L~~~~~~~~~----~i~~l~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------~ 558 (793)
.++++|+.|+|++|.+..++ .+..+++|++|+|++|++..+ ..+..+. +|++|++++|.....+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56889999999999988743 445899999999999999877 3455565 999999999988776662 3
Q ss_pred hhcCCCCcceeec
Q 043214 559 VLSSLSRLEELYM 571 (793)
Q Consensus 559 ~i~~l~~L~~L~l 571 (793)
++..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4778999999973
No 181
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.0064 Score=64.99 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=92.2
Q ss_pred CCeEEecCCCcccccc--cCCCCCccEEEccccC-ccccccChhhhcCCCcceEEEecCCcCCCCC-hhhhcccCCcEEE
Q 043214 425 CPAISLHNCKIDELLE--GLECPQLKLLHMATED-LSVQQIPNNFFIGMTELRVLDFVAMHLPSLP-SSLCLLSNLQTLC 500 (793)
Q Consensus 425 ~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~ 500 (793)
++.+.+.. .+..+.. +..|.+|+.+.+..+. .....+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 55565543 2444433 3378999999997653 2233777888899999988777654 33333 4567889999999
Q ss_pred cCCcccC-CCcccccCCcccEEEecCCCCcccChhcccCCCCCEEecCCCcCccccChhhhcCCCCcceeecc
Q 043214 501 LDYGVFG-DVSIIGELKTLEILSFQGSNIEEFPREIGQLTRLRLLNLAYCNLLKVIPSNVLSSLSRLEELYMG 572 (793)
Q Consensus 501 L~~~~~~-~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~ 572 (793)
+...-.. ....+..+.+|+.+.+..+ +..+....-...+|+.+.+... ...+....+..+.+|......
T Consensus 144 lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 144 IPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceeccc
Confidence 9754211 1456677889999988654 5555544334467888887653 234444446677777776644
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.53 E-value=0.00031 Score=72.97 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=59.6
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc----cccCCh
Q 043214 121 CYEAFESRMSTLNDVLNALN------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR----SCLQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~----~~~~~~ 182 (793)
.+..++|.+..++.+.+.+. .....-|-++|.+|.|||+||+++++.... | .+... ......
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~ 95 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 95 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchH
Confidence 35678899998888888762 112357899999999999999999987655 2 21110 001122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
......+.+.....+..+|+||++...
T Consensus 96 ~~~~~~~f~~a~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDAL 122 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCeEEEechhhhh
Confidence 334445555555446789999999854
No 183
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=3.5e-05 Score=72.95 Aligned_cols=118 Identities=12% Similarity=0.065 Sum_probs=86.0
Q ss_pred ChhhhcccCCcEEEcCCc-ccCC--C----cccccCCcccEEEecCCCCcc-----cChhcccCCCCCEEecCCCcCccc
Q 043214 487 PSSLCLLSNLQTLCLDYG-VFGD--V----SIIGELKTLEILSFQGSNIEE-----FPREIGQLTRLRLLNLAYCNLLKV 554 (793)
Q Consensus 487 p~~i~~l~~L~~L~L~~~-~~~~--~----~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~ 554 (793)
...+...++|++|+|++| .+.. . ..+...++|++|++++|.+.. +...+...+.|++|++++|.....
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667889999999999 7765 2 456667899999999998872 455566778999999999876432
Q ss_pred ----cChhhhcCCCCcceeec--cccccceeecccccccCcccHHHhcCCCCCcEEEEEeccCC
Q 043214 555 ----IPSNVLSSLSRLEELYM--GYTFVEWEIEGLNNVRSKASLHELKQLSYLTNLEIQIQDAN 612 (793)
Q Consensus 555 ----~p~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~~L~i~~~~~~ 612 (793)
+... +...++|++|++ .+|.+.... .......+...++|+.|++++|.+.
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g-------~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNNV-------EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH-------HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHHH-------HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333 667788999999 777764321 1223456677789999999888764
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.51 E-value=0.00042 Score=75.02 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=58.8
Q ss_pred CcccccccHHHH---HHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecccccc-CChHHHHHHHHHHHh
Q 043214 121 CYEAFESRMSTL---NDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMRSCL-QSESRRARRLCERLK 194 (793)
Q Consensus 121 ~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~~~~-~~~~~~~~~l~~~l~ 194 (793)
.+..++|.+..+ ..+...+..+.+..+-|+|.+|+||||+|+.+.+.... | .+...... ....+..........
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~ 103 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRN 103 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence 456788988877 66777777667788999999999999999999987655 3 22211111 111112222222222
Q ss_pred cCCeEEEEEeCCCcc
Q 043214 195 KEKKILVILDNIWAS 209 (793)
Q Consensus 195 ~~kr~LlVLDdv~~~ 209 (793)
.+++.+|+||++...
T Consensus 104 ~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 104 AGRRTILFVDEVHRF 118 (447)
T ss_dssp TTCCEEEEEETTTCC
T ss_pred cCCCcEEEEeChhhh
Confidence 347799999999875
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.00028 Score=74.53 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=38.7
Q ss_pred cccccccHHHHHHHHHHh-CCCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 122 YEAFESRMSTLNDVLNAL-NNPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+..++|++...+.+.+++ ..+....+.|+|..|+||||+|+.+.+.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999888 6555555999999999999999998874
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.51 E-value=0.0012 Score=68.27 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=58.4
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEecCCChHHHHHHHHHhhh-hh-c-eecc-----ccccC
Q 043214 121 CYEAFESRMSTLNDVLNALN------------NPNVNMIGVYGMAGVGKTKLVKEAPRLA-KK-I-SFLM-----RSCLQ 180 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~-f-q~~~-----~~~~~ 180 (793)
.+..+.|.+..++.+.+.+. ....+-|-++|.+|.|||+||+++++.. .. | .+.. ....
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g- 88 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG- 88 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhh-
Confidence 35667888887777776552 1233678999999999999999999977 33 2 2211 1111
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 181 SESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 181 ~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
........+.+.....+..+|+||++...
T Consensus 89 ~~~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 89 ESEKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp SCHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 22344555555555457789999999865
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.48 E-value=3.8e-05 Score=69.44 Aligned_cols=105 Identities=9% Similarity=0.065 Sum_probs=58.3
Q ss_pred cccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhhh----ceeccccccCChHHHHHHHHHHHhcCC
Q 043214 124 AFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK----ISFLMRSCLQSESRRARRLCERLKKEK 197 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----fq~~~~~~~~~~~~~~~~l~~~l~~~k 197 (793)
.++|+...++++.+.+. ...-.-|-|+|.+|.|||++|+.+++.... |-+........ .....+.+.- +
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~a---~ 76 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA--PQLNDFIALA---Q 76 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTS--SCHHHHHHHH---T
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcc--hhhhcHHHHc---C
Confidence 46788888888887764 222234679999999999999999986422 32111111010 1111111222 2
Q ss_pred eEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeec
Q 043214 198 KILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 198 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR 233 (793)
.-.|+||++.... ....+...+.......+||.||.
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 2478999998762 11222222222334567888886
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00018 Score=75.99 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=41.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+..++|+++.++.+..++..+....+.|+|.+|+||||+|+.+.+..
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356688999999999999887655558999999999999999998874
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.36 E-value=0.00016 Score=74.72 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=34.2
Q ss_pred cccccHHHHHHHHHHhC---------------CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 124 AFESRMSTLNDVLNALN---------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.++|.+..++.+.+.+. ......+-|+|.+|+|||++|+.+++...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 36777777766665442 23345789999999999999999887653
No 190
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.30 E-value=0.0019 Score=69.00 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=58.3
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecccc--c--cCCh
Q 043214 121 CYEAFESRMSTLNDVLNALN------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMRS--C--LQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~~--~--~~~~ 182 (793)
.+..++|.+..++.+.+.+. .....-|-|+|.+|+|||+||+++++.... | .+.... . ....
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~ 192 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEG 192 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------C
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchH
Confidence 35678999999999888772 122468899999999999999999887654 2 221110 0 0111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
......+.+.....+..+|+||++...
T Consensus 193 ~~~~~~~~~~a~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 193 EKLVRALFAVARELQPSIIFIDQVDSL 219 (389)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEETGGGG
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 233444454444445689999999754
No 191
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.28 E-value=0.00016 Score=67.98 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCC---CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 130 STLNDVLNALNN---PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 130 ~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..++.+.+++.+ ..-..+.|+|.+|.||||||+.+++...
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444444432 2346899999999999999999998764
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.26 E-value=0.0018 Score=67.95 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=56.8
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccCC
Q 043214 121 CYEAFESRMSTLNDVLNALN------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQS 181 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~~ 181 (793)
.+..++|.+..++.+.+.+. ....+-|-++|.+|+|||+||+++++.... | .+. ......
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~- 127 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE- 127 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcch-
Confidence 45667888888887777652 112345889999999999999999997765 2 211 111111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.......+.+.....+..+|+||++...
T Consensus 128 ~~~~~~~~f~~a~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 128 SEKLVKQLFAMARENKPSIIFIDQVDAL 155 (355)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 1233444555444446799999999864
No 193
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.23 E-value=0.00041 Score=72.21 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=71.1
Q ss_pred CcccccccHHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh--ceeccccccCChHHHHHHHHHHHhc--
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLMRSCLQSESRRARRLCERLKK-- 195 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~~~~~~~~~~~~~~l~~~l~~-- 195 (793)
.+..++|++..++.+.+++..+.. .++-+.|.+|+||||+|+++.+.... +.+.... .........+.+....
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~--~~~~~i~~~~~~~~~~~~ 101 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD--CKIDFVRGPLTNFASAAS 101 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT--CCHHHHHTHHHHHHHBCC
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc--cCHHHHHHHHHHHHhhcc
Confidence 356788999999999999885544 56777888999999999999987644 2222111 1122222223333321
Q ss_pred --CCeEEEEEeCCCccc---CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 196 --EKKILVILDNIWASL---DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 196 --~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
+++-+||+||+.... ..+.+...+.....+.+||+||....
T Consensus 102 ~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 102 FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 267899999998754 22333222211224568888887654
No 194
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00059 Score=69.68 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=38.9
Q ss_pred ccccHHHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 125 FESRMSTLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+.+|+++++++...|. ++....+-|+|.+|.|||++|+.|.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999998887765 56778899999999999999999998764
No 195
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.18 E-value=0.00084 Score=67.33 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=52.3
Q ss_pred cccccccHHHHHHHHHHhC---C---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-c-c--cCChH
Q 043214 122 YEAFESRMSTLNDVLNALN---N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-S-C--LQSES 183 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~-~--~~~~~ 183 (793)
+..++|.+..++.+.+.+. . ...+-+-|+|.+|+|||++|+++++.... | .+... . . .....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGA 84 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhH
Confidence 4567788877666655432 1 23456789999999999999999987654 2 21111 0 0 01112
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 184 RRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 184 ~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.....+.+........+|+|||+...
T Consensus 85 ~~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 85 ARVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECC---
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcchh
Confidence 23334444444345789999999864
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.17 E-value=0.0012 Score=67.71 Aligned_cols=89 Identities=11% Similarity=0.163 Sum_probs=59.1
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecccc----ccCCh
Q 043214 121 CYEAFESRMSTLNDVLNALN------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMRS----CLQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~~----~~~~~ 182 (793)
.+..++|.+..++.+.+.+. ......+.|+|.+|+||||+|+++++.... | .+.... .....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~ 98 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDG 98 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchH
Confidence 35678899998888887763 123468899999999999999999987654 2 221110 01122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
......+.......+..+|+||++...
T Consensus 99 ~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 99 EKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 333444444444446789999999764
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.10 E-value=0.0042 Score=67.37 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=57.1
Q ss_pred CcccccccHHHHHHHHHHhC------------CCCceEEEEEecCCChHHHHHHHHHhhh-hh-c-eeccc-----cccC
Q 043214 121 CYEAFESRMSTLNDVLNALN------------NPNVNMIGVYGMAGVGKTKLVKEAPRLA-KK-I-SFLMR-----SCLQ 180 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~-f-q~~~~-----~~~~ 180 (793)
.+..++|.+..++.+.+.+. ....+-|-++|.+|+|||+||+++++.. .. | .+... ....
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~ 211 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcch
Confidence 35678899998888887663 1234678999999999999999999976 32 2 21111 1011
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 181 SESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 181 ~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
. ......+.+.....+..+|+||++...
T Consensus 212 ~-~~~~~~~f~~a~~~~~~vl~iDEid~l 239 (444)
T 2zan_A 212 S-EKLVKNLFQLARENKPSIIFIDEIDSL 239 (444)
T ss_dssp C-CCTHHHHHHHHHHSCSEEEEESCTTTT
T ss_pred H-HHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 1 112334444444446789999999864
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.06 E-value=0.0013 Score=72.01 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=61.7
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------ceeccccc-cCChHHHHHH
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------ISFLMRSC-LQSESRRARR 188 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------fq~~~~~~-~~~~~~~~~~ 188 (793)
...++||+.+++.+++.+......-+-++|.+|+|||++|+.+.+.... +.+..... ..........
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~ 258 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHH
Confidence 5679999999999999987544456689999999999999999987522 11111100 0011123344
Q ss_pred HHHHHhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeec
Q 043214 189 LCERLKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTAR 233 (793)
Q Consensus 189 l~~~l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR 233 (793)
+.+.+...+..+|++| ...+..+.+...+. . ..-++|.+|.
T Consensus 259 ~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~-~-g~v~vI~at~ 299 (468)
T 3pxg_A 259 VMDEIRQAGNIILFID--AAIDASNILKPSLA-R-GELQCIGATT 299 (468)
T ss_dssp HHHHHHTCCCCEEEEC--C--------CCCTT-S-SSCEEEEECC
T ss_pred HHHHHHhcCCeEEEEe--CchhHHHHHHHhhc-C-CCEEEEecCC
Confidence 5555554467899999 22222233433332 1 2345665554
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.0017 Score=67.95 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=66.7
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------c-eeccccccCChHHHHHHHHHHHh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------I-SFLMRSCLQSESRRARRLCERLK 194 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------f-q~~~~~~~~~~~~~~~~l~~~l~ 194 (793)
+..++|.+..++.+...+..+++..+.++|..|+||||+|+.+.+.... + .+.... ........+.+.....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~-~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD-DRGIDVVRNQIKDFAS 102 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS-CCSHHHHHTHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc-cccHHHHHHHHHHHHh
Confidence 4567788888888888888776666999999999999999999886532 1 111111 1111221122222221
Q ss_pred -----cCCeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCC
Q 043214 195 -----KEKKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNP 235 (793)
Q Consensus 195 -----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 235 (793)
.+.+-++|+|++... ...+.+...+.......++|++|...
T Consensus 103 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 103 TRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp BCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred hcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 123578999999764 22333322222223456777777544
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.99 E-value=0.00019 Score=64.48 Aligned_cols=104 Identities=7% Similarity=0.014 Sum_probs=55.9
Q ss_pred cccccHHHHHHHHHHhC---CCCceEEEEEecCCChHHHHHHHHHhhhhhceeccccccCCh-HHHHHHHHHHHhcCCeE
Q 043214 124 AFESRMSTLNDVLNALN---NPNVNMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSE-SRRARRLCERLKKEKKI 199 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~-~~~~~~l~~~l~~~kr~ 199 (793)
.++|++..++++.+.+. ..+ .-|-|+|..|.|||++|+.+++....|- ..+.... ......+.+.- +.-
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~-~~vll~G~~GtGKt~lA~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~a---~~~ 77 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRT-SPVFLTGEAGSPFETVARYFHKNGTPWV---SPARVEYLIDMPMELLQKA---EGG 77 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCS-SCEEEEEETTCCHHHHHGGGCCTTSCEE---CCSSTTHHHHCHHHHHHHT---TTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCC-CcEEEECCCCccHHHHHHHHHHhCCCeE---EechhhCChHhhhhHHHhC---CCC
Confidence 46788888777777654 222 3467999999999999999987543210 0011111 11112222221 235
Q ss_pred EEEEeCCCccc--CcchhcCCCCC-CCCCcEEEEeecC
Q 043214 200 LVILDNIWASL--DFEKVGIPFGD-NHKGCKVLMTARN 234 (793)
Q Consensus 200 LlVLDdv~~~~--~~~~l~~~~~~-~~~gs~IivTTR~ 234 (793)
.|+||++.... ....+...+.. ...+.+||.||..
T Consensus 78 ~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 78 VLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred eEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 78999998762 11222111111 1345678888863
No 201
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.96 E-value=0.00086 Score=67.54 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+-+.|+|.+|+|||+||+++++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34779999999999999999987654
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.93 E-value=0.0033 Score=73.54 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=63.5
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------ceec--c----ccccCCh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------ISFL--M----RSCLQSE 182 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------fq~~--~----~~~~~~~ 182 (793)
.+..++||+.+++.+++.+......-+.++|.+|+||||+|+.+.+.... |.+. . .......
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH
Confidence 45678999999999999998655667789999999999999999887532 1110 0 0111223
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
......+.+.+...+..+|++||+...
T Consensus 264 e~~l~~~~~~~~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 264 EKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_dssp HHHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEechHHH
Confidence 445566666665546799999999754
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.93 E-value=0.0012 Score=67.73 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=54.5
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccCC
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQS 181 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~~ 181 (793)
+..+.|.+..++.+.+.+. -.....|.|+|.+|.||||||+++++.... | .+. .......
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~ 93 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 93 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch
Confidence 4567788877777766543 134567999999999999999999987654 2 111 0000111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.+.....+..+|+||++..
T Consensus 94 -~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 94 -EANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp -TTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred -HHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 11233344444334678999999974
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.82 E-value=0.0013 Score=71.18 Aligned_cols=113 Identities=17% Similarity=0.311 Sum_probs=58.8
Q ss_pred ccccc-cc--HHHHHHHHHHhCCCC-ceEEEEEecCCChHHHHHHHHHhhhhh-c------eeccccccCChH-----HH
Q 043214 122 YEAFE-SR--MSTLNDVLNALNNPN-VNMIGVYGMAGVGKTKLVKEAPRLAKK-I------SFLMRSCLQSES-----RR 185 (793)
Q Consensus 122 ~~~~~-gr--~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-f------q~~~~~~~~~~~-----~~ 185 (793)
+..|+ |. ......+........ ...+.|+|.+|+||||||+++++.... + .+....-..... ..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 183 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGK 183 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTC
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHccc
Confidence 34454 43 233444444443322 668999999999999999999987632 1 111000000000 00
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCcccC---c-chhcCCCCC-CCCCcEEEEeecCC
Q 043214 186 ARRLCERLKKEKKILVILDNIWASLD---F-EKVGIPFGD-NHKGCKVLMTARNP 235 (793)
Q Consensus 186 ~~~l~~~l~~~kr~LlVLDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTTR~~ 235 (793)
...+.+.+.. +.-+|+|||+..... . +.+...+.. ...|..||+||...
T Consensus 184 ~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 184 LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 1122333331 457999999976532 1 222222111 23577899998753
No 205
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.82 E-value=0.0021 Score=67.16 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=55.8
Q ss_pred CcccccccHHHHHHHHHHhC-----CCCceEEEEEecCCChHHHHHHHHHhhhhh-ce-eccccccCChHHHHHHHHHHH
Q 043214 121 CYEAFESRMSTLNDVLNALN-----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-IS-FLMRSCLQSESRRARRLCERL 193 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-fq-~~~~~~~~~~~~~~~~l~~~l 193 (793)
.+..++|++..++.+..++. ......|-|+|.+|+|||++|+++.+.... |- +..... ... ..+...+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~--~~~---~~~~~~~ 101 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI--EKS---GDLAAIL 101 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC--CSH---HHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc--cch---hHHHHHH
Confidence 45678999999888888775 234567899999999999999999887554 31 111111 111 1222222
Q ss_pred h-cCCeEEEEEeCCCcc
Q 043214 194 K-KEKKILVILDNIWAS 209 (793)
Q Consensus 194 ~-~~kr~LlVLDdv~~~ 209 (793)
. ..+..+|+||++...
T Consensus 102 ~~~~~~~vl~lDEi~~l 118 (338)
T 3pfi_A 102 TNLSEGDILFIDEIHRL 118 (338)
T ss_dssp HTCCTTCEEEEETGGGC
T ss_pred HhccCCCEEEEechhhc
Confidence 2 135679999999875
No 206
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0037 Score=65.57 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=59.9
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-cc---cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-SC---LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~~---~~~~ 182 (793)
|..+.|-++.+++|.+.+. -...+-|-++|++|.|||.||+++++.... | .+... .. ....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchH
Confidence 5677888888887776553 123567889999999999999999998776 3 32211 11 1112
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
....+.+++.-.....+.|++|+++.
T Consensus 227 e~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 227 SRMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred HHHHHHHHHHHHHhCCceEeeecchh
Confidence 34455666665555789999999975
No 207
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.0019 Score=71.71 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=41.1
Q ss_pred CcccccccHHHHHHHHHHhCC-----------------CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 121 CYEAFESRMSTLNDVLNALNN-----------------PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+..++|++..++++.+++.. ...+.+-|+|.+|+||||+|+.+++...
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356789999999999998863 1346899999999999999999998764
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.74 E-value=0.0019 Score=66.52 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=35.3
Q ss_pred cccccHHHHHHHHHHhCC---------CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 124 AFESRMSTLNDVLNALNN---------PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.++|.+..++.+...+.. .....+.++|.+|+||||+|+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 467888887777766642 123589999999999999999998865
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.69 E-value=0.0034 Score=73.30 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=63.3
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------ceecc--ccccCChHHHH
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------ISFLM--RSCLQSESRRA 186 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------fq~~~--~~~~~~~~~~~ 186 (793)
....++||+.+++.+.+.+......-+-++|.+|+|||++|+.+.+.... +.+.. ... .......
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~-G~~e~~l 256 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR-GEFEDRL 256 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccccccc-chHHHHH
Confidence 35679999999999999987555556789999999999999999987522 11111 000 0111233
Q ss_pred HHHHHHHhcCCeEEEEEeCCCcccCcchhcCCCCCCCCCcEEEEeecC
Q 043214 187 RRLCERLKKEKKILVILDNIWASLDFEKVGIPFGDNHKGCKVLMTARN 234 (793)
Q Consensus 187 ~~l~~~l~~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 234 (793)
..+.+.....++.+|++| ...+..+.+...+. ...-++|.||..
T Consensus 257 ~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~ 300 (758)
T 3pxi_A 257 KKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTL 300 (758)
T ss_dssp HHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCT
T ss_pred HHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCCh
Confidence 445555554567899999 22222233333332 223456666653
No 210
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.67 E-value=0.076 Score=56.10 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=49.4
Q ss_pred ccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCcccccc-ccccCCCCCCCceEeecCCCcceeccccCccCCc
Q 043214 639 QLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIVY-DLDREGFPKLKHPQIQNNPYFLYVIDSVKHVPRD 717 (793)
Q Consensus 639 ~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 717 (793)
.+..|+.+.+..+ ...++...+..+.+|+.+.+... +..++. .+ .++++|+.+.+.++ .++.+++. ...
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF--~~c~~L~~i~l~~~-~i~~I~~~----aF~ 307 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLC--SGCSNLTKVVMDNS-AIETLEPR----VFM 307 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTT--TTCTTCCEEEECCT-TCCEECTT----TTT
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccc--cccccccccccccc-ccceehhh----hhc
Confidence 4455566555432 33344444444566676666432 222221 22 45667777776543 23444222 233
Q ss_pred cCcccceeecccccccccccccccccccCCCCCeeee
Q 043214 718 AFRALESLSLSNLINLEKICHGKLKAESFCKLTTLKV 754 (793)
Q Consensus 718 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 754 (793)
.+++|+.+.|.+ +++.+....| ..+.+|+.+.|
T Consensus 308 ~c~~L~~i~lp~--~l~~I~~~aF--~~C~~L~~i~i 340 (379)
T 4h09_A 308 DCVKLSSVTLPT--ALKTIQVYAF--KNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEECCT--TCCEECTTTT--TTCTTCCCCCC
T ss_pred CCCCCCEEEcCc--cccEEHHHHh--hCCCCCCEEEE
Confidence 456677777642 3444432222 24555666655
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.64 E-value=0.0027 Score=75.19 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=59.1
Q ss_pred cCcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh------------ceeccc--c----ccCC
Q 043214 120 WCYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK------------ISFLMR--S----CLQS 181 (793)
Q Consensus 120 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------fq~~~~--~----~~~~ 181 (793)
.....++||+.++..+++.+......-+.++|.+|+||||+|+.+.+.... +.+... . ....
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~ 246 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------C
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchH
Confidence 346678999999999999887655556789999999999999999987521 111110 0 0112
Q ss_pred hHHHHHHHHHHHhc-CCeEEEEEeCCCcc
Q 043214 182 ESRRARRLCERLKK-EKKILVILDNIWAS 209 (793)
Q Consensus 182 ~~~~~~~l~~~l~~-~kr~LlVLDdv~~~ 209 (793)
.......+.+.+.. +++.+|++|++...
T Consensus 247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l 275 (854)
T 1qvr_A 247 FEERLKAVIQEVVQSQGEVILFIDELHTV 275 (854)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 22334555555543 36799999999764
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.004 Score=66.29 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=59.6
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecccc--c--cCC
Q 043214 121 CYEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMRS--C--LQS 181 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~~--~--~~~ 181 (793)
.|..+.|-++.+++|.+.+. -...+-|-++|++|.|||+||+++++.... | .+.... . ...
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence 36678899988888877543 124568899999999999999999998776 3 222110 0 111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.....+.+++.-.....+.|++|+++.
T Consensus 259 se~~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 259 GAKLVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECTHH
T ss_pred HHHHHHHHHHHHHhcCCeEEeecchhh
Confidence 233445555554444679999999864
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0056 Score=65.26 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=59.2
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc--cc--cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR--SC--LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~--~~--~~~~ 182 (793)
|..+.|-++.+++|.+.+. -..++-|-++|++|.|||+||+++++.... | .+... .. ....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ges 259 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHH
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHH
Confidence 5667888888877776553 124578899999999999999999998776 3 22211 11 1112
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......++..-.....++|++|+++.
T Consensus 260 e~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 260 ARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred HHHHHHHHHHHHhcCCceeeeecccc
Confidence 33445555555555789999999974
No 214
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.62 E-value=0.0039 Score=66.01 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=37.1
Q ss_pred cccccccHHHHHH---HHHHhCCCCc--eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLND---VLNALNNPNV--NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+..++|++..++. +.+.+..... ..+-|+|.+|+|||++|+.+.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678899887665 4455544433 5899999999999999999998764
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.60 E-value=0.0041 Score=62.03 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=52.1
Q ss_pred cccccccHHHHHHHHHH---hCC---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eecc-----ccccCCh
Q 043214 122 YEAFESRMSTLNDVLNA---LNN---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLM-----RSCLQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~-----~~~~~~~ 182 (793)
+..++|.+..++++.+. +.. ....-+.|+|.+|.||||||+++++.... | .+.. ......
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~- 89 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG- 89 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCC-
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhh-
Confidence 45677877766655443 221 12345889999999999999999987654 2 2111 111111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.+........++++|++..
T Consensus 90 ~~~~~~~~~~a~~~~~~il~iDeid~ 115 (257)
T 1lv7_A 90 ASRVRDMFEQAKKAAPCIIFIDEIDA 115 (257)
T ss_dssp HHHHHHHHHHHHTTCSEEEEETTHHH
T ss_pred HHHHHHHHHHHHHcCCeeehhhhhhh
Confidence 23334444444444568999999853
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0057 Score=65.07 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=59.7
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-cc---cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-SC---LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~~---~~~~ 182 (793)
|..+.|-++.+++|.+.+. -...+-|-++|++|.|||+||+++++.... | .+... .. ....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHH
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHH
Confidence 4567888888888776543 234678899999999999999999998776 3 22211 11 1112
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
....+.+++.-.....+.|++|+++.
T Consensus 288 ek~ir~lF~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 288 ARMVRELFEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCTT
T ss_pred HHHHHHHHHHHHhcCCceEeeccccc
Confidence 34455566555555789999999974
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0057 Score=64.39 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=60.0
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-c---ccCC
Q 043214 121 CYEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-S---CLQS 181 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~---~~~~ 181 (793)
.|..+.|-++.+++|.+.+. -...+=|-++|++|.|||.||+++++.... | .+... . ....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCch
Confidence 35677888888877776543 123578999999999999999999998776 3 22211 1 1112
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.......+++.-.....+.|++|+++.
T Consensus 260 sek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 260 GPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 234455566655555789999999874
No 218
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0059 Score=64.96 Aligned_cols=88 Identities=18% Similarity=0.223 Sum_probs=59.7
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc--cc--cCC
Q 043214 121 CYEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR--SC--LQS 181 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~--~~--~~~ 181 (793)
.+..+.|-++.+++|.+.+. -...+-|-++|++|.|||+||+++++.... | .+... .. ...
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccch
Confidence 35677898888888777553 124567899999999999999999998776 3 22211 11 111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.......+++.-.....+.|++|+++.
T Consensus 250 ~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 250 GPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred hHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 234455566555555779999999863
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.48 E-value=0.0023 Score=66.46 Aligned_cols=39 Identities=41% Similarity=0.451 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCC--CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 131 TLNDVLNALNNP--NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 131 ~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
....+....... ....+.|+|.+|+||||||+.+++...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 344444444432 346789999999999999999998763
No 220
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.43 E-value=0.27 Score=51.80 Aligned_cols=88 Identities=9% Similarity=0.047 Sum_probs=54.4
Q ss_pred ccccCCceEEEeecCCcccchhhHHHhhcCCcEEEeccccCccccc-cccccCCCCCCCceEeecCCCcceeccccCccC
Q 043214 637 SDQLQNSRILKLKLNNSTWLKDDVFMQMKGIEELYLDEMRGVKNIV-YDLDREGFPKLKHPQIQNNPYFLYVIDSVKHVP 715 (793)
Q Consensus 637 ~~~~~~L~~L~l~~~~~~~~p~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 715 (793)
...+.+|+.+.+.. ....++...+..+++|+.+.+.++.. +.++ ..+ .++.+|+.+.|.. .++.+.+. .
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i-~~I~~~aF--~~c~~L~~i~lp~--~l~~I~~~----a 328 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAI-ETLEPRVF--MDCVKLSSVTLPT--ALKTIQVY----A 328 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTC-CEECTTTT--TTCTTCCEEECCT--TCCEECTT----T
T ss_pred cceeehhccccccc-cceecccccccccccccccccccccc-ceehhhhh--cCCCCCCEEEcCc--cccEEHHH----H
Confidence 34566777777754 34456666666678999999876432 2332 334 6788999998864 35555332 3
Q ss_pred CccCcccceeecccccccccc
Q 043214 716 RDAFRALESLSLSNLINLEKI 736 (793)
Q Consensus 716 ~~~~~~L~~L~l~~~~~l~~~ 736 (793)
...+++|+.+.|-. +++.+
T Consensus 329 F~~C~~L~~i~ip~--~v~~I 347 (379)
T 4h09_A 329 FKNCKALSTISYPK--SITLI 347 (379)
T ss_dssp TTTCTTCCCCCCCT--TCCEE
T ss_pred hhCCCCCCEEEECC--ccCEE
Confidence 34566788777753 35555
No 221
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.42 E-value=0.012 Score=59.19 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=39.0
Q ss_pred EEEEecCCChHHHHHHHHHhhhhh--ceecc-ccccCC---hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAKK--ISFLM-RSCLQS---ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~~--fq~~~-~~~~~~---~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
+.++|.+|.||||||+.++..... +.+.. ...... .......+.+........++++|++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 999999999999999999987654 22211 111111 122334444444333568999999964
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.28 E-value=0.016 Score=67.58 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=51.2
Q ss_pred ccccccHHHHHHHHHHhCC---------CCceEEEEEecCCChHHHHHHHHHhhhhh----c-ee--ccccccCChHHHH
Q 043214 123 EAFESRMSTLNDVLNALNN---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK----I-SF--LMRSCLQSESRRA 186 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----f-q~--~~~~~~~~~~~~~ 186 (793)
..++|.+..++.+.+.+.. .....+-++|.+|+|||++|+++.+.... | .+ +.-....... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--G 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc--c
Confidence 3578999888877776651 12337999999999999999999887521 2 11 1111111000 1
Q ss_pred HHHHHHHhcCCeEEEEEeCCCcc
Q 043214 187 RRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 187 ~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
..+.+.+.....-.|+||++...
T Consensus 569 ~~l~~~~~~~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 569 GQLTEKVRRKPYSVVLLDAIEKA 591 (758)
T ss_dssp --CHHHHHHCSSSEEEEECGGGS
T ss_pred chhhHHHHhCCCeEEEEeCcccc
Confidence 22333333334458999999765
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.28 E-value=0.014 Score=63.25 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=52.7
Q ss_pred cccccccHHHHHHHHHHh---CC---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-ccc---CChH
Q 043214 122 YEAFESRMSTLNDVLNAL---NN---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-SCL---QSES 183 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~~~---~~~~ 183 (793)
+..+.|.++.++++.+.+ .. .-.+-|.|+|.+|.||||||+++++.... | .+... +.. ....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~ 94 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA 94 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccH
Confidence 456778777665555433 21 11235789999999999999999987655 2 22111 100 0112
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 184 RRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 184 ~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
.....+.+....+...+|+||++..
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred HHHHHHHHHHHhcCCCEEEEechhh
Confidence 2333444444444678999999965
No 224
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.26 E-value=0.0051 Score=62.61 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=39.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccCChHHHHHHHHHHH----hcCCeEEEEEeCCCc
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQSESRRARRLCERL----KKEKKILVILDNIWA 208 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~~~~~~~~~l~~~l----~~~kr~LlVLDdv~~ 208 (793)
.+..+.++|.+|+|||+||+++++.... | .+. ..... ........+.+.. +..+..+|+||+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g-~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAG-EPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC----HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCc-hhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4568889999999999999999998754 2 211 11111 1112222222222 344678999999954
No 225
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.21 E-value=0.0039 Score=63.85 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++.+||+|.|-|||||||.|..+.--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 46799999999999999998876553
No 226
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.20 E-value=0.008 Score=65.65 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=56.6
Q ss_pred CcccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccC
Q 043214 121 CYEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQ 180 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~ 180 (793)
.+..++|.+..++++.+.+. .....-|-|+|.+|.|||++|+++.+.... | .+. .....
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g- 280 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG- 280 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTT-
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcc-
Confidence 45678899998888877664 233457899999999999999999887654 2 111 11111
Q ss_pred ChHHHHHHHHHHHhcCCeEEEEEeCCC
Q 043214 181 SESRRARRLCERLKKEKKILVILDNIW 207 (793)
Q Consensus 181 ~~~~~~~~l~~~l~~~kr~LlVLDdv~ 207 (793)
........+.+....++..+|+||++.
T Consensus 281 ~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 281 ESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred hhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 112233344444444567899999994
No 227
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.20 E-value=0.019 Score=59.54 Aligned_cols=108 Identities=9% Similarity=0.128 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCCCc-eEEEEEecCCChHHHHHHHHHhhhhh-c----------------------eec-cccc---cC
Q 043214 129 MSTLNDVLNALNNPNV-NMIGVYGMAGVGKTKLVKEAPRLAKK-I----------------------SFL-MRSC---LQ 180 (793)
Q Consensus 129 ~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-f----------------------q~~-~~~~---~~ 180 (793)
.+..+.+.+.+..+.+ ..+-++|..|+||||+|+.+.+.... . .+. .... ..
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 87 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCC
Confidence 4556667776665554 47999999999999999998875421 0 000 0000 11
Q ss_pred ChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 181 SESRRARRLCERLK----KEKKILVILDNIWASL--DFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 181 ~~~~~~~~l~~~l~----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
...+..+.+.+.+. .+++-++|+|++.... ..+.+...+....++..+|++|.+..
T Consensus 88 ~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 88 LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 12233445555543 2356789999998763 23444333333345678888887664
No 228
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.12 E-value=0.011 Score=59.88 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=41.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh--h-c-ee--ccc--cccCChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK--K-I-SF--LMR--SCLQSESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~--~-f-q~--~~~--~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
+++-|+|++|+||||||.++..... . | .. ... ....+.....+.+.+.+.+ .+ +||+|++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~-~~-LLVIDsI~a 193 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ-HR-VIVIDSLKN 193 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH-CS-EEEEECCTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh-CC-EEEEecccc
Confidence 5778999999999999999876521 1 2 22 111 1112344556667777776 45 999999865
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.97 E-value=0.08 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...||.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998877643
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.96 E-value=0.018 Score=57.07 Aligned_cols=62 Identities=29% Similarity=0.341 Sum_probs=37.4
Q ss_pred EEEEecCCChHHHHHHHHHhhhhh--ceecc-ccc---cCChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAKK--ISFLM-RSC---LQSESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~~--fq~~~-~~~---~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
+.|+|..|.||||||+.+.+.... +.+.. ... ..........+.+........++++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~ 119 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhh
Confidence 899999999999999999987654 11110 000 001112233344444322458999999953
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.93 E-value=0.024 Score=66.94 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=36.2
Q ss_pred ccccccHHHHHHHHHHhCC---------CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 123 EAFESRMSTLNDVLNALNN---------PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..++|.+..++.+...+.. .....+.|+|..|+|||++|+.+.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578998888877766541 123589999999999999999998865
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.93 E-value=0.052 Score=58.07 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...++|.++|.+|+||||+|..+....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998877643
No 233
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.015 Score=59.38 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh-------c-eeccccccCChHHHHHHHHHHHhc----C
Q 043214 129 MSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-------I-SFLMRSCLQSESRRARRLCERLKK----E 196 (793)
Q Consensus 129 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------f-q~~~~~~~~~~~~~~~~l~~~l~~----~ 196 (793)
++.++.+.+.+..+.....-++|..|.||||+|+.+.+.... | .+... ......+..+.+.+.... +
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~-~~~~~id~ir~li~~~~~~p~~~ 81 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE-GENIGIDDIRTIKDFLNYSPELY 81 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS-SSCBCHHHHHHHHHHHTSCCSSS
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC-cCCCCHHHHHHHHHHHhhccccC
Confidence 444566666666566779999999999999999999875211 1 12111 111222334445555531 3
Q ss_pred CeEEEEEeCCCcc--cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 197 KKILVILDNIWAS--LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 197 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
++=++|+|++... ...+.+...+..-.+.+.+|++|.+..
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChH
Confidence 4568899999876 234445444433345778888876543
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.90 E-value=0.021 Score=57.59 Aligned_cols=62 Identities=29% Similarity=0.341 Sum_probs=37.5
Q ss_pred EEEEecCCChHHHHHHHHHhhhhh--ceecc-ccc---cCChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 147 IGVYGMAGVGKTKLVKEAPRLAKK--ISFLM-RSC---LQSESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 147 i~I~G~gGiGKTtLa~~v~~~~~~--fq~~~-~~~---~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
+.|+|..|.||||||+.+.+.... +.+.. ... ..........+.+........++|+|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~ 143 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 143 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHh
Confidence 899999999999999999987654 11110 000 000112233344444333458999999953
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.66 E-value=0.015 Score=66.92 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=56.5
Q ss_pred cccccccHHHHHHHHHHhC----C---------CCceEEEEEecCCChHHHHHHHHHhhhhh--ceec-----cccccCC
Q 043214 122 YEAFESRMSTLNDVLNALN----N---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFL-----MRSCLQS 181 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~-----~~~~~~~ 181 (793)
+..+.|-++.+++|.+.+. . ..++-|-++|.+|.|||+||+++++.... |.+. ..... .
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g-e 281 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG-E 281 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT-H
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch-H
Confidence 4556777776666665432 1 24568999999999999999999998765 3221 11111 1
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
.......+.+.-......+|+||+++..
T Consensus 282 se~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 2233455555555556899999999753
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.64 E-value=0.017 Score=62.90 Aligned_cols=88 Identities=9% Similarity=-0.006 Sum_probs=52.8
Q ss_pred cccccccHHHHHHHHHH---hCCC--CceEEEEEecCCChHHHHHHHHHhhhh--h-c-eeccc--c-ccCChHHHHHHH
Q 043214 122 YEAFESRMSTLNDVLNA---LNNP--NVNMIGVYGMAGVGKTKLVKEAPRLAK--K-I-SFLMR--S-CLQSESRRARRL 189 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~---l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~--~-f-q~~~~--~-~~~~~~~~~~~l 189 (793)
+..++|.++.++.+..+ +..+ ..+-+-++|.+|.|||++|+++.+... . | .+... . ......+.....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN 115 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHH
Confidence 46688998887655443 3332 235788999999999999999999875 2 2 21111 0 011112223333
Q ss_pred HHHH---hcCCeEEEEEeCCCcc
Q 043214 190 CERL---KKEKKILVILDNIWAS 209 (793)
Q Consensus 190 ~~~l---~~~kr~LlVLDdv~~~ 209 (793)
.+.. ...+..+|++|+++..
T Consensus 116 f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 116 FRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp HHHTEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHhhhhcCCcEEEEechhhc
Confidence 3332 2235689999999654
No 237
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.64 E-value=0.011 Score=57.94 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=35.1
Q ss_pred ccccccc---HHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESR---MSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+..++++ ...++.+..+........+.|+|.+|+||||||+.+++...
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445552 34556666665555667899999999999999999988765
No 238
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.63 E-value=0.011 Score=56.40 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHhCC---CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 128 RMSTLNDVLNALNN---PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 128 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
|++.++++.+.+.. ....+|+|.|..|.||||+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55566777776653 345799999999999999999987754
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.44 E-value=0.033 Score=60.72 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=50.9
Q ss_pred CcccccccHHHHHHHHHH---hCCC---------CceEEEEEecCCChHHHHHHHHHhhhhh--ceecc-ccccCChHHH
Q 043214 121 CYEAFESRMSTLNDVLNA---LNNP---------NVNMIGVYGMAGVGKTKLVKEAPRLAKK--ISFLM-RSCLQSESRR 185 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq~~~-~~~~~~~~~~ 185 (793)
.+..+.|.++.++++.+. +... -.+-+.|+|.+|.||||||+++++.... +.+.. .+........
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~ 108 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhH
Confidence 456678887766555543 3211 1234899999999999999999987654 22221 1111111122
Q ss_pred HHHHHHHHhc---CCeEEEEEeCCCc
Q 043214 186 ARRLCERLKK---EKKILVILDNIWA 208 (793)
Q Consensus 186 ~~~l~~~l~~---~kr~LlVLDdv~~ 208 (793)
...+...+.. ....++++|++..
T Consensus 109 ~~~v~~lfq~a~~~~p~il~IDEId~ 134 (499)
T 2dhr_A 109 AARVRDLFETAKRHAPCIVFIDEIDA 134 (499)
T ss_dssp HHHHHHHTTTSSSSSSCEEEEECGGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEehHHH
Confidence 2333333332 1247999999964
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.24 E-value=0.019 Score=55.07 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCC--CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 130 STLNDVLNALNN--PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 130 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+..++|.+.+.. ....+|+|+|..|.|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666652 4567999999999999999999877543
No 241
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.21 E-value=0.054 Score=57.67 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|.++|.+|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999887644
No 242
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.06 E-value=0.012 Score=54.34 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987643
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.01 E-value=0.026 Score=65.88 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=54.2
Q ss_pred ccccccHHHHHHHHHHhCC---------CCceEEEEEecCCChHHHHHHHHHhhhhh-c---eeccc---------ccc-
Q 043214 123 EAFESRMSTLNDVLNALNN---------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I---SFLMR---------SCL- 179 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f---q~~~~---------~~~- 179 (793)
..++|.+..++.+...+.. .....+-++|.+|+|||++|+.+.+.... | ..+.. +..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 4577888888777766541 12347999999999999999999987643 2 11110 000
Q ss_pred --CChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 180 --QSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 180 --~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
....+....+.+.+.....-.|+||++...
T Consensus 538 ~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred CCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 000111223444554445679999999875
No 244
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.94 E-value=0.017 Score=54.99 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCC----CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 131 TLNDVLNALNNP----NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 131 ~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.++.+.+++... ....+.|+|.+|+||||||+++++...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455555421 226889999999999999999998764
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.92 E-value=0.013 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|.|.|++|.||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999988754
No 246
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.88 E-value=0.023 Score=59.04 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=36.5
Q ss_pred CcccccccHHHHHHHHHHhC-----CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 121 CYEAFESRMSTLNDVLNALN-----NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
....++|.+..++.+-..+. ......+.++|.+|.||||||+.+.+...
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34556787766666655543 23446899999999999999999998763
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.88 E-value=0.11 Score=53.39 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+++|+|..|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999987644
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.86 E-value=0.012 Score=54.39 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.9
Q ss_pred eEEEEEecCCChHHHHHHHH
Q 043214 145 NMIGVYGMAGVGKTKLVKEA 164 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v 164 (793)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.81 E-value=0.015 Score=55.29 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=23.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|.|+|+.|.||||+|+.+.+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987643
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.78 E-value=0.019 Score=67.00 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=54.3
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh-c-eeccc-c-c--cCCh
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFLMR-S-C--LQSE 182 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~~~-~-~--~~~~ 182 (793)
+..++|.+..++++.+++. -.....|.|+|.+|.||||||+.+.+.... | .+... . . ....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~ 282 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhH
Confidence 4567888777777766553 123457999999999999999999887654 2 11110 0 0 1111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 183 SRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 183 ~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.+........++++|++..
T Consensus 283 ~~~l~~vf~~a~~~~p~il~iDEid~ 308 (806)
T 1ypw_A 283 ESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEESGGG
T ss_pred HHHHHHHHHHHHhcCCcEEEeccHHH
Confidence 23334444444333568999999954
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.76 E-value=0.016 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.+|+|+|+.|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998774
No 252
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.76 E-value=0.018 Score=57.56 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=33.1
Q ss_pred cccccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+..++|++..+.++.+.+. .....-|-|+|..|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4567888888877776554 12234677999999999999999998653
No 253
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.62 E-value=0.029 Score=57.47 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=22.1
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
....++|+|+|-||+||||+|..+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH
Confidence 446789999999999999999887664
No 254
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.55 E-value=0.035 Score=57.05 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=30.5
Q ss_pred HHHHHHHHHhC----CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 130 STLNDVLNALN----NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 130 ~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
...+++++.+. .+....|.|+|+.|.||||+++.++.....
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33445555443 556678999999999999999999886554
No 255
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.52 E-value=0.02 Score=53.65 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...|.|+|+.|.||||+|+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987543
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.51 E-value=0.015 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|+|+|+.|.||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 257
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.51 E-value=0.02 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.+|.|.|++|.||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 258
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.50 E-value=0.037 Score=55.87 Aligned_cols=27 Identities=19% Similarity=-0.002 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|+|..|.||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999987654
No 259
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.50 E-value=0.025 Score=57.96 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=35.9
Q ss_pred cccccHHHHHHHHHHhCC--------------CCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 124 AFESRMSTLNDVLNALNN--------------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.++|++..++.+...+.. ....-+-++|.+|+|||++|+.+.+....
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467888887777765532 22456789999999999999999987654
No 260
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.49 E-value=0.026 Score=52.90 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
....+|.|.|+.|.||||+|+.+.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999887654
No 261
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.49 E-value=0.028 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-..++|+|..|.|||||++.+++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998663
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.47 E-value=0.019 Score=53.51 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 263
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.43 E-value=0.021 Score=52.45 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..++|+|.|+.|.||||+|+.+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999987643
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.40 E-value=0.023 Score=53.98 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|+|+.|.||||+|+.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999987754
No 265
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.39 E-value=0.025 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999988654
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.33 E-value=0.25 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..+|+++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999987764
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.29 E-value=0.026 Score=52.25 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999987643
No 268
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.28 E-value=0.019 Score=54.66 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+|+|.|+.|.||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 269
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.22 E-value=0.031 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|.|.|+.|.||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.22 E-value=0.025 Score=53.81 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|+|+.|.||||+|+.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998754
No 271
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.21 E-value=0.036 Score=53.75 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 133 NDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 133 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334444444567899999999999999999887653
No 272
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.16 E-value=0.022 Score=53.09 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=22.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+|.|+|++|.||||+|+.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987654
No 273
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.15 E-value=0.029 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+.+++|+|..|.|||||+..+....+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 457999999999999999998877543
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.11 E-value=0.027 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 275
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.09 E-value=0.027 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.9
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999886543
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.09 E-value=0.028 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988654
No 277
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.09 E-value=0.032 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+...+|+|+|+.|.||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 278
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.08 E-value=0.047 Score=55.30 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.++|+|.|-||+||||+|..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 478899999999999999887764
No 279
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.03 E-value=0.028 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.+|+|+|+.|.||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999877
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.02 E-value=0.03 Score=55.45 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|.|+|+.|.||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5799999999999999999987643
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.00 E-value=0.024 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|.|.|++|.||||+|+.+.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 282
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.96 E-value=0.031 Score=53.95 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 132 LNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 132 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 18 ~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 18 AEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444434567899999999999999999887653
No 283
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.95 E-value=0.049 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
++|+|.|-||+||||+|..+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 68888999999999999887764
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.94 E-value=0.026 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999998654
No 285
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.87 E-value=0.038 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|.|+.|.||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999998654
No 286
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.87 E-value=0.031 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|+|+|+.|.||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 287
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.87 E-value=0.035 Score=53.00 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|..|.||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999987743
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.87 E-value=0.036 Score=52.27 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|.|.|+.|.||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987543
No 289
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.86 E-value=0.46 Score=50.43 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|.+|+||||++..+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887644
No 290
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.86 E-value=0.029 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999988753
No 291
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.85 E-value=0.031 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
...+|+|+|+.|.||||+|+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 292
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.85 E-value=0.036 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|+|+|..|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456999999999999999999887543
No 293
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.84 E-value=0.036 Score=51.47 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.++|+|..|.|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 294
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.83 E-value=0.034 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|.|+.|.||||+|+.+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999987753
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.81 E-value=0.034 Score=54.84 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|+.|.|||||++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998654
No 296
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.80 E-value=0.013 Score=54.83 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=47.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh-------ceec--ccccc---CC---------hHHHHHHHHHHHhcCCeEEEEE
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK-------ISFL--MRSCL---QS---------ESRRARRLCERLKKEKKILVIL 203 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~-------fq~~--~~~~~---~~---------~~~~~~~l~~~l~~~kr~LlVL 203 (793)
.++.|+|..|.||||+|..+..+... |+.. ..... .+ .......+.+.+.+ +.-+|++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~-~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEE-DTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCT-TEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcC-CCCEEEE
Confidence 47889999999999999655544321 2211 00000 00 00001122222222 4569999
Q ss_pred eCCCcc-cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 204 DNIWAS-LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 204 Ddv~~~-~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
|.+... ..|.+....+.+ .|..|++|.+..+
T Consensus 83 DE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDLT 114 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHH--TTCEEEEEEESBC
T ss_pred ECcccCCHHHHHHHHHHHH--CCCCEEEEeeccc
Confidence 999775 344433222212 2778999988654
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.76 E-value=0.027 Score=52.69 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|.|.|++|.||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998754
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.76 E-value=0.029 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|.|+|+.|+||||+++.+.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998765
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.72 E-value=0.038 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|+|.|+.|.||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999987754
No 300
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.68 E-value=0.039 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|++.|+.|.||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 301
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.64 E-value=0.056 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|.|.|++|.||||+|+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 302
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.63 E-value=0.034 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|+|+|+.|.||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999997754
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.62 E-value=0.034 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987654
No 304
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.61 E-value=0.12 Score=55.33 Aligned_cols=25 Identities=44% Similarity=0.632 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+.++|+|..|+||||||+.+.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 4789999999999999998876543
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.60 E-value=0.029 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
++++|+|..|.|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999887543
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.60 E-value=0.039 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|+|.|+.|.||||+|+.+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987643
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.56 E-value=0.041 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|.|.|++|.||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.53 E-value=0.035 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 309
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.52 E-value=0.049 Score=55.57 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=35.0
Q ss_pred cccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 124 AFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 124 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.++|+...+.++.+.+. .....-|-|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 47788888888777665 2233456799999999999999999854
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.47 E-value=0.044 Score=52.41 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|.|.|+.|.||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998754
No 311
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.46 E-value=0.042 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.|.|.|+.|.||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988543
No 312
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.45 E-value=0.035 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+|.|.|+.|.||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 313
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.44 E-value=0.07 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|.+|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887643
No 314
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.42 E-value=0.048 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|+|.|+.|.||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 315
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.40 E-value=0.046 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.-.+|+|+|+.|.||||+|+.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998775
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.38 E-value=0.044 Score=52.04 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|.|.|+.|.||||+|+.+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998754
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.36 E-value=0.034 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=17.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|.|.|+.|.||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999987654
No 318
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.32 E-value=0.059 Score=53.33 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|.|+|++|.||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999987653
No 319
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.28 E-value=0.035 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
++++|+|..|.|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999987754
No 320
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.25 E-value=0.047 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|+|.|+.|.||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988754
No 321
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.17 E-value=0.051 Score=56.29 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=36.6
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 123 EAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
..++|++..++.+...+..+ .-+-++|.+|+|||+||+.+.+....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45778888888887776543 35789999999999999999886543
No 322
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.17 E-value=0.04 Score=50.68 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=22.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
.+++|+|..|.|||||++.+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999998775443
No 323
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.16 E-value=0.046 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|+.|.||||+++.+.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998654
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.14 E-value=0.049 Score=51.16 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 446899999999999999999987654
No 325
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.12 E-value=0.044 Score=57.23 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=34.9
Q ss_pred CcccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 121 CYEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 121 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+..++|.+..++.+..........-+-|+|.+|+|||++|+.+.+...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3556888887665544333332333488999999999999999998653
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.11 E-value=0.058 Score=55.05 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|+|..|.|||||++.+....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999987754
No 327
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.06 E-value=0.056 Score=54.89 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|.+|+||||+++.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999987644
No 328
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.04 E-value=0.1 Score=60.11 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=58.0
Q ss_pred cccccccHHHHHHHHHHhC-------------CCCceEEEEEecCCChHHHHHHHHHhhhhh--ce-----eccccccCC
Q 043214 122 YEAFESRMSTLNDVLNALN-------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK--IS-----FLMRSCLQS 181 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--fq-----~~~~~~~~~ 181 (793)
+..+.|.++.++++.+.+. -...+-|-++|++|.|||.+|+++++.... |. +...+-.++
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGes 555 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSC
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchH
Confidence 4456677777777666543 012345789999999999999999998776 32 112222233
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
+.....+++.-+......|++|+++.
T Consensus 556 -e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 556 -EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -HHHHHHHHHHHHHcCCceeechhhhH
Confidence 34566677766655789999999864
No 329
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.03 E-value=0.078 Score=54.10 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+.+|||.|..|.||||+|+.+....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356699999999999999999987654
No 330
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.01 E-value=0.055 Score=48.99 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..-.+++|+|..|.|||||++.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999998754
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.01 E-value=0.055 Score=52.19 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...|.|.|+.|.||||+|+.+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999987653
No 332
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.00 E-value=0.035 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.2
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+|+|.|..|.||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999877553
No 333
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.00 E-value=0.17 Score=55.11 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=31.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhhceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSESRRARRLCERLKKEKKILVILDNIWAS 209 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~~~ 209 (793)
...+|+|+|.+|+||||++.++...... .++|+++|=.|....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~------------------------~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR------------------------KGWKTCLICADTFRA 142 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH------------------------TTCCEEEEEECCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------------------------CCCeEEEEeccccch
Confidence 4679999999999999999887653321 257888887777554
No 334
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.97 E-value=0.088 Score=55.28 Aligned_cols=46 Identities=22% Similarity=0.165 Sum_probs=35.1
Q ss_pred ccccHHHHHHHHHHhC-------------C--CCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 125 FESRMSTLNDVLNALN-------------N--PNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
++|.+..++.+...+. . .....|.++|.+|+|||++|+++++....
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5777777777776661 1 13457899999999999999999987654
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.96 E-value=0.062 Score=51.48 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+|+|.|+.|.||||+|+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987654
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.95 E-value=0.049 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999987643
No 337
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.93 E-value=0.1 Score=51.16 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
....+|+|.|+.|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987653
No 338
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.92 E-value=0.048 Score=51.13 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999987743
No 339
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.92 E-value=0.066 Score=51.26 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
...+||.|.|++|.||||.|+.+.+....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 35689999999999999999999887643
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.89 E-value=0.062 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
...+|+|.|..|.|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998764
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.89 E-value=0.059 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.132 Sum_probs=22.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|+|.|+.|.||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988754
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.84 E-value=0.058 Score=52.37 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...|.|.|+.|.||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.80 E-value=0.059 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999977653
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.77 E-value=0.057 Score=52.18 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...|.|.|+.|.||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987654
No 345
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.76 E-value=0.05 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+.|.|+|++|+|||||++.+.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987654
No 346
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.70 E-value=0.076 Score=57.89 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=36.7
Q ss_pred ccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 123 EAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 123 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..++|++..++.+...+..+ .-|-++|.+|+|||+||+.+.+...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45789998888887766533 3678999999999999999998653
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.69 E-value=0.068 Score=49.21 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+++|+|..|.|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999877543
No 348
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.68 E-value=0.068 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|.|.|+.|.||||+|+.+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999987654
No 349
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.66 E-value=0.052 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|+|+|+.|.||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999987544
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.65 E-value=0.071 Score=55.43 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=53.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhhh------c--------eec-------cccccCChHHHHHHHHHHHhcCCeEEE
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAKK------I--------SFL-------MRSCLQSESRRARRLCERLKKEKKILV 201 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~------f--------q~~-------~~~~~~~~~~~~~~l~~~l~~~kr~Ll 201 (793)
.-.+++|+|..|.|||||.+.+...... + ... ..............+...|.. +.=+|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~-~Pdvi 200 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRE-DPDII 200 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTS-CCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhh-CcCEE
Confidence 3359999999999999999998664332 1 000 000001112234466677765 55678
Q ss_pred EEeCCCcccCcchhcCCCCCCCCCcEEEEeecC
Q 043214 202 ILDNIWASLDFEKVGIPFGDNHKGCKVLMTARN 234 (793)
Q Consensus 202 VLDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~ 234 (793)
++|...+.+.++.+... ...|.-||+||..
T Consensus 201 llDEp~d~e~~~~~~~~---~~~G~~vl~t~H~ 230 (356)
T 3jvv_A 201 LVGEMRDLETIRLALTA---AETGHLVFGTLHT 230 (356)
T ss_dssp EESCCCSHHHHHHHHHH---HHTTCEEEEEESC
T ss_pred ecCCCCCHHHHHHHHHH---HhcCCEEEEEEcc
Confidence 89999876555544332 2346668888873
No 351
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.64 E-value=0.066 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+|+|.|+.|.||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987753
No 352
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.64 E-value=0.1 Score=54.05 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=24.2
Q ss_pred hCCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 139 LNNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 139 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+.+...+++.+.|.||+||||+|..+....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334566899999999999999999877643
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.63 E-value=0.049 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999987643
No 354
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.62 E-value=0.066 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|+|.|+.|.||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987754
No 355
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.61 E-value=0.074 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|.+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887643
No 356
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.57 E-value=0.087 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|+|.|-||+||||+|..+....
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 36779999999999999877643
No 357
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.49 E-value=0.076 Score=53.41 Aligned_cols=24 Identities=21% Similarity=0.573 Sum_probs=21.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
...+|+|.|+.|.||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 358
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.45 E-value=0.064 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997754
No 359
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.41 E-value=0.081 Score=53.70 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+++|+|..|+||||+++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999987754
No 360
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.38 E-value=0.08 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 361
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.36 E-value=0.11 Score=54.70 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
...+-++|.+|+|||++|+.+.+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889999999999999999987643
No 362
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.33 E-value=0.069 Score=51.39 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|..|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46999999999999999999987543
No 363
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.32 E-value=0.1 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.3
Q ss_pred eEEEEE-ecCCChHHHHHHHHHhh
Q 043214 145 NMIGVY-GMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~-G~gGiGKTtLa~~v~~~ 167 (793)
++|+|+ +-||+||||+|..+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~ 25 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA 25 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH
Confidence 688888 67889999999887664
No 364
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.29 E-value=0.14 Score=50.24 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=20.8
Q ss_pred CceEEEEEe-cCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYG-MAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G-~gGiGKTtLa~~v~~~~ 168 (793)
..++|+|+| -||+||||+|..+....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l 29 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL 29 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH
Confidence 457898886 58899999998877643
No 365
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.23 E-value=0.074 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+|+|.|+.|.||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998865
No 366
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.22 E-value=0.078 Score=50.46 Aligned_cols=23 Identities=13% Similarity=0.340 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+|+|.|+.|.||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 367
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.22 E-value=0.25 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+++.|+|.+|+||||||.++....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999999987654
No 368
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.15 E-value=0.082 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+|+|.|+.|.||||+|+.+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987643
No 369
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.11 E-value=0.081 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|+|.|+.|+||||||+.+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988654
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.10 E-value=0.077 Score=51.84 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.. .+++|+|..|.|||||.+.+.--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 799999999999999999987643
No 371
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.04 E-value=0.089 Score=50.61 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..|.|.|+.|.||||+|+.+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987653
No 372
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.02 E-value=0.16 Score=52.94 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 132 LNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 132 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..++++.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 4577899999999999999999986543
No 373
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.01 E-value=0.13 Score=53.04 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 140 NNPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 140 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+...+++.+.|-||+||||+|..+....
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 34456788899999999999999877643
No 374
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.97 E-value=0.086 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.+++|+|..|.|||||++.+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999999876
No 375
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.97 E-value=0.13 Score=54.07 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCceEEEEEe-cCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
...++|+|+| -||+||||+|..+...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH
Confidence 4678999996 8999999999887663
No 376
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.94 E-value=0.1 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|.+|+||||++..++...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 45799999999999999999987643
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.92 E-value=0.097 Score=53.43 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....+|+|+|..|.|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999987754
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.92 E-value=0.093 Score=50.31 Aligned_cols=23 Identities=17% Similarity=0.008 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|.|.|+.|.||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 379
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.90 E-value=0.075 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+..-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987644
No 380
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.84 E-value=0.079 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.+++|+|..|.|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999999998874
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.77 E-value=0.094 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHHhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 382
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.73 E-value=0.074 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+++|+|..|.|||||++.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.67 E-value=0.11 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+++|+|..|+||||+++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34699999999999999999987754
No 384
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.53 E-value=0.089 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|..|.|||||++.+.--.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35899999999999999999876443
No 385
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.53 E-value=0.063 Score=52.24 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=15.9
Q ss_pred eEEEEEecCCChHHHHHHHHH-hhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAP-RLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~-~~~ 168 (793)
.+++|+|..|.|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999988 543
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.50 E-value=0.11 Score=50.48 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=23.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
...|.|.|+.|.||||+|+.+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999886543
No 387
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.40 E-value=0.16 Score=51.75 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCC---CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 130 STLNDVLNALNN---PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 130 ~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..++.+.+++.. .....+.|+|..|+|||+||+++++...
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344445555542 1246888999999999999999998765
No 388
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.38 E-value=0.088 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987643
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.36 E-value=0.11 Score=49.24 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred EEEEEecCCChHHHHHHHHHhhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+|.|.|++|.||||.|+.+.+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6889999999999999999887644
No 390
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.32 E-value=0.29 Score=48.81 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCCceEEEEEec-CCChHHHHHHHHHhh
Q 043214 141 NPNVNMIGVYGM-AGVGKTKLVKEAPRL 167 (793)
Q Consensus 141 ~~~~~vi~I~G~-gGiGKTtLa~~v~~~ 167 (793)
+...++|.|+|. ||+||||+|..+...
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~ 106 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVA 106 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHH
Confidence 456789999975 889999999887764
No 391
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.23 E-value=0.3 Score=42.44 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=19.5
Q ss_pred cceEEEecCCcCCCCCh-hhhcccCCcEEEcCCcc
Q 043214 472 ELRVLDFVAMHLPSLPS-SLCLLSNLQTLCLDYGV 505 (793)
Q Consensus 472 ~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 505 (793)
+|+.|+|++|.++.+|. .+..+.+|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45566666666665543 34555666666666654
No 392
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.20 E-value=0.21 Score=54.35 Aligned_cols=48 Identities=8% Similarity=-0.141 Sum_probs=35.2
Q ss_pred cccccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+....|.+..+.+.+... .....+|.+.|+.|.||||+|+++.+...
T Consensus 371 ~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 371 IPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred CCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3445567666566666542 33557999999999999999999988754
No 393
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.20 E-value=0.16 Score=47.51 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=29.6
Q ss_pred cCCCcceEEEecCC-cCC-----CCChhhhcccCCcEEEcCCcccCC--C----cccccCCcccEEEecCCCCc
Q 043214 468 IGMTELRVLDFVAM-HLP-----SLPSSLCLLSNLQTLCLDYGVFGD--V----SIIGELKTLEILSFQGSNIE 529 (793)
Q Consensus 468 ~~~~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~ 529 (793)
..-+.|+.|+|+++ .+. .+...+..-.+|+.|+|++|.+.+ - ..+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44455666666553 443 123333444456666666555543 1 12223344555555555554
No 394
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.19 E-value=0.094 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++|+|..|.|||||++.+.--.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5899999999999999999876443
No 395
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.18 E-value=0.1 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+++|+|..|.|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998874
No 396
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.18 E-value=0.12 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 458899999999999999998764
No 397
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.17 E-value=0.12 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|.|+|+.|+||||||+.+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999988754
No 398
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.13 E-value=0.096 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++|+|..|.|||||.+.+.--.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999986543
No 399
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.13 E-value=0.13 Score=50.94 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=20.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 457899999999999999988765
No 400
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.13 E-value=0.097 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|..|.|||||++.+.--.+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999876443
No 401
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.10 E-value=0.096 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+.--.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3689999999999999999987644
No 402
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.09 E-value=0.31 Score=49.41 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCCceEEEEEec-CCChHHHHHHHHHhh
Q 043214 141 NPNVNMIGVYGM-AGVGKTKLVKEAPRL 167 (793)
Q Consensus 141 ~~~~~vi~I~G~-gGiGKTtLa~~v~~~ 167 (793)
+...++|.|+|. ||+||||+|..+...
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~ 128 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAV 128 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHH
Confidence 456789999996 889999999887764
No 403
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.09 E-value=0.098 Score=49.03 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=27.4
Q ss_pred HHHHHHHhCC-CCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 132 LNDVLNALNN-PNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 132 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
+..+..++.. ..-.-+.|+|++|.||||+|.++.+....
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444432 11237999999999999999999887653
No 404
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.06 E-value=0.083 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+..-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987643
No 405
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.03 E-value=0.11 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+..-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3699999999999999999987643
No 406
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.03 E-value=0.1 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987643
No 407
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.03 E-value=0.17 Score=47.14 Aligned_cols=50 Identities=20% Similarity=0.148 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCeEEEEEeCCCcc-----cCcchhcCCCCCCCCCcEEEEeecCCC
Q 043214 187 RRLCERLKKEKKILVILDNIWAS-----LDFEKVGIPFGDNHKGCKVLMTARNPD 236 (793)
Q Consensus 187 ~~l~~~l~~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gs~IivTTR~~~ 236 (793)
...++.+..++-=|||||++... ...+++...+...-....||+|+|...
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 34555555545459999999654 222333222222334567999999653
No 408
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.96 E-value=0.083 Score=53.35 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=19.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|.|..|.||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987643
No 409
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.93 E-value=0.34 Score=42.04 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=16.8
Q ss_pred cccEEEecCCCCcccChh-cccCCCCCEEecCCC
Q 043214 517 TLEILSFQGSNIEEFPRE-IGQLTRLRLLNLAYC 549 (793)
Q Consensus 517 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 549 (793)
+|++|+|++|+|+.+|.+ +..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 345555555555555443 344555555555554
No 410
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.92 E-value=0.1 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||.+.+..-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987644
No 411
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.90 E-value=0.14 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|..|.|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999987644
No 412
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.88 E-value=0.16 Score=51.52 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=19.6
Q ss_pred ceEEEEEe---cCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYG---MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G---~gGiGKTtLa~~v~~~ 167 (793)
.++|+|++ -||+||||+|..+...
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~ 60 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYL 60 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHH
Confidence 45778886 8999999999887663
No 413
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.88 E-value=0.1 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+..-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999987644
No 414
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.88 E-value=0.12 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.+++|+|..|.|||||++.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 415
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.86 E-value=0.15 Score=50.44 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=21.1
Q ss_pred CceEEEEE-ecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVY-GMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~-G~gGiGKTtLa~~v~~~~ 168 (793)
..++|+|+ +-||+||||+|..+....
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~l 31 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYL 31 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHH
Confidence 45789998 578899999999877643
No 416
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.82 E-value=0.23 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.123 Sum_probs=19.6
Q ss_pred eEEEEEec-CCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGM-AGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~-gGiGKTtLa~~v~~~~ 168 (793)
++|+|.|. ||+||||+|..+....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~l 26 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAA 26 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 57889995 8899999998877643
No 417
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.80 E-value=0.11 Score=51.11 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++|+|..|.|||||++.+..-.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999877543
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.74 E-value=0.12 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.++.|+|.+|.||||||..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999998765
No 419
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.74 E-value=0.11 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||.+.+.--.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987643
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.71 E-value=0.12 Score=52.65 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|.|+|+.|+||||||..+++...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5899999999999999999998765
No 421
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=90.71 E-value=0.14 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.2
Q ss_pred eEEEEE-ecCCChHHHHHHHHHhh
Q 043214 145 NMIGVY-GMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~-G~gGiGKTtLa~~v~~~ 167 (793)
++|+|+ |-||+||||+|..+...
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~ 25 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHY 25 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHH
Confidence 678888 68999999999887663
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.71 E-value=0.14 Score=51.60 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+|.|+|+.|+||||||..+++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35899999999999999999987654
No 423
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.69 E-value=0.14 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 424
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.66 E-value=0.11 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+++|+|..|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998764
No 425
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.58 E-value=0.16 Score=49.60 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|+.|.||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 426
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.55 E-value=0.12 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||.+.+..-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987643
No 427
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.54 E-value=0.12 Score=51.66 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|..|.|||||++.+..-.+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987543
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.50 E-value=0.14 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+|.|.|++|.||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 429
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.48 E-value=0.17 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+++|+|.+|+||||++..++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999987643
No 430
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.42 E-value=0.12 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||.+.+..-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987643
No 431
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.41 E-value=0.14 Score=54.73 Aligned_cols=63 Identities=25% Similarity=0.308 Sum_probs=38.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhhhceeccccccCChHHHHHHHHHHHhcCCeEEEEEeCCC
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAKKISFLMRSCLQSESRRARRLCERLKKEKKILVILDNIW 207 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~fq~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVLDdv~ 207 (793)
....+|.|+|++|.||||+|+.+.+.....-+..+ ...........+.+.+..++ -+|+|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D-~~~~~~~~~~~~~~~l~~g~--~vIiD~~~ 318 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD-TLGSWQRCVSSCQAALRQGK--RVVIDNTN 318 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG-GSCSHHHHHHHHHHHHHTTC--CEEEESCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc-hHHHHHHHHHHHHHHHhcCC--cEEEeCCC
Confidence 35679999999999999999999876533111110 01122334445555565543 35688764
No 432
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.37 E-value=0.12 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|..|.|||||++.+.--.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987644
No 433
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.37 E-value=0.14 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999865
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.30 E-value=0.17 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.-.+++|+|..|.|||||++.+....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44699999999999999999987643
No 435
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.27 E-value=0.31 Score=53.74 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHHhC--CCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 125 FESRMSTLNDVLNALN--NPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+.+....+..... -..-.+|+|+|+.|.|||||++.+.....
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3455444444444331 12447999999999999999999988654
No 436
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.27 E-value=0.14 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.+++|+|.+|.|||||++.+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999987543
No 437
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.25 E-value=0.13 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+++|+|..|.|||||++.+..-.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999999887543
No 438
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.21 E-value=0.24 Score=54.88 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.6
Q ss_pred ccccHHHHHHHHHHhC------CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 125 FESRMSTLNDVLNALN------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
++|-+...+.+.+.+. .....++.++|.+|+||||||+.++.....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4565555554443322 224568999999999999999999987654
No 439
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.21 E-value=0.16 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.3
Q ss_pred EEEEEecCCChHHHHHHHHHhhhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.++|+|..|.|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987543
No 440
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.21 E-value=0.18 Score=56.81 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=37.5
Q ss_pred cccccccHHHHHHHHHHhCCCCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 122 YEAFESRMSTLNDVLNALNNPNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
+..++|.+..++.+...+..+ ..+.|+|..|.||||||+.+.....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 346788888888777776654 5889999999999999999988653
No 441
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.20 E-value=0.38 Score=51.09 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=27.1
Q ss_pred HHHHHHHHHhC-------CCCceEEEEE-ecCCChHHHHHHHHHhh
Q 043214 130 STLNDVLNALN-------NPNVNMIGVY-GMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 130 ~~~~~l~~~l~-------~~~~~vi~I~-G~gGiGKTtLa~~v~~~ 167 (793)
+++.++...+. ....++|+|+ |-||+||||+|..+...
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 87 QNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp HHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 34555555542 3457899988 68999999999887663
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.19 E-value=0.18 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.-.+|.|.|+.|.||||+++.+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988765
No 443
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.16 E-value=2.7 Score=43.53 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.....|+|+|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45679999999999999999998754
No 444
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.15 E-value=0.43 Score=47.90 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCCceEEEEEec-CCChHHHHHHHHHhhh
Q 043214 141 NPNVNMIGVYGM-AGVGKTKLVKEAPRLA 168 (793)
Q Consensus 141 ~~~~~vi~I~G~-gGiGKTtLa~~v~~~~ 168 (793)
+...++|+|+|. ||+||||+|..+....
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~l 117 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVI 117 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 556789999985 7899999998877643
No 445
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.15 E-value=0.16 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998764
No 446
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.13 E-value=0.15 Score=51.58 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.-.+++|+|..|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44699999999999999999987643
No 447
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.10 E-value=0.27 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.1
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.++.+-|.||+||||+|..+...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~ 37 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALW 37 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHH
Confidence 56677789999999999887764
No 448
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.09 E-value=0.079 Score=61.83 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=53.5
Q ss_pred cccccccHHHHHHHHHHhCC-------------CCceEEEEEecCCChHHHHHHHHHhhhhh-c-eec-----cccccCC
Q 043214 122 YEAFESRMSTLNDVLNALNN-------------PNVNMIGVYGMAGVGKTKLVKEAPRLAKK-I-SFL-----MRSCLQS 181 (793)
Q Consensus 122 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f-q~~-----~~~~~~~ 181 (793)
+..+.|.+..++.+.+.+.- .....+.++|.+|.||||||+++.+.... | .+. ...-...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~ 555 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTS
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCcc
Confidence 44566777777777765531 12356889999999999999999987655 2 211 1111111
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 043214 182 ESRRARRLCERLKKEKKILVILDNIWA 208 (793)
Q Consensus 182 ~~~~~~~l~~~l~~~kr~LlVLDdv~~ 208 (793)
......+.+.........|++|+++.
T Consensus 556 -~~~i~~~f~~a~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 556 -EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -SHHHHHHHHHHHHHCSBCCCCSSHHH
T ss_pred -HHHHHHHHHHHHhcCCeEEEEEChhh
Confidence 23344555554433456899999864
No 449
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.01 E-value=0.13 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+|+|+|.+|+||||+|..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999877643
No 450
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.00 E-value=0.39 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
+++.|.|.+|+||||||.++....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999877543
No 451
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.96 E-value=0.28 Score=50.98 Aligned_cols=26 Identities=31% Similarity=0.178 Sum_probs=19.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...++..-|-||+||||+|..+.-..
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34566667899999999998876643
No 452
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.92 E-value=0.13 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.-.+|+|.|..|.||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4469999999999999999988763
No 453
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.89 E-value=0.16 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 454
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.83 E-value=0.78 Score=59.93 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=19.9
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
.-|-++|.+|.|||++|+.+....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC
Confidence 467799999999999997776654
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.76 E-value=0.19 Score=50.49 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
...+|.|.|+.|+||||||..+++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 346899999999999999999987654
No 456
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.75 E-value=0.18 Score=53.72 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=33.1
Q ss_pred ccccHHHHHHHHHHhC--------------CCCceEEEEEecCCChHHHHHHHHHhhhhh
Q 043214 125 FESRMSTLNDVLNALN--------------NPNVNMIGVYGMAGVGKTKLVKEAPRLAKK 170 (793)
Q Consensus 125 ~~gr~~~~~~l~~~l~--------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 170 (793)
++|.++.++.+...+. ....+-|.++|++|+||||+|+.+.+....
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5676666666544431 013456899999999999999999987655
No 457
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.74 E-value=0.29 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=18.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..++.+.|.||+||||+|.++...
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~ 49 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVY 49 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHH
Confidence 445566689999999999887664
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.73 E-value=0.16 Score=50.91 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.++.|+|.+|.||||||..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5999999999999999998775
No 459
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.70 E-value=0.16 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.++.|+|.+|.||||||+.+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 59999999999999999998763
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.68 E-value=0.15 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 461
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.63 E-value=0.17 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|.+|+|||||++.+....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999987643
No 462
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.59 E-value=0.17 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+.+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999987753
No 463
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.55 E-value=0.18 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..|+++|.+|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998763
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.54 E-value=0.22 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...|.|.|..|.||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999988754
No 465
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.47 E-value=0.35 Score=45.12 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=21.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999998764
No 466
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.43 E-value=0.27 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=18.9
Q ss_pred eEEEEE-ecCCChHHHHHHHHHhh
Q 043214 145 NMIGVY-GMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~-G~gGiGKTtLa~~v~~~ 167 (793)
++|+|+ +-||+||||+|..+...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~ 28 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTA 28 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHH
Confidence 578887 57889999999987764
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.38 E-value=0.18 Score=52.71 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..-.+++|+|..|.|||||++.+.....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456999999999999999999987543
No 468
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.38 E-value=0.17 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 469
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.35 E-value=0.19 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 470
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.33 E-value=0.18 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999998764
No 471
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.28 E-value=0.15 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|..|.|||||++.+..-..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 36899999999999999999876443
No 472
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.25 E-value=0.35 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.7
Q ss_pred eEEEEEe-cCCChHHHHHHHHHhh
Q 043214 145 NMIGVYG-MAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G-~gGiGKTtLa~~v~~~ 167 (793)
++|+|+| -||+||||+|..+...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~ 26 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVA 26 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCCHHHHHHHHHHH
Confidence 5788876 6789999999887764
No 473
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.05 E-value=0.18 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
-.+++|+|..|.|||||++.+..-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999987643
No 474
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.02 E-value=0.33 Score=45.63 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=23.7
Q ss_pred HHHHhC-CCCceEEEEEecCCChHHHHHHHHHh
Q 043214 135 VLNALN-NPNVNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 135 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
+++.+. ......|+|+|.+|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 444443 33345689999999999999998765
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.00 E-value=0.24 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
.+|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999987654
No 476
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.83 E-value=0.23 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.6
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
+.|.|.|..|+||||||..+..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998764
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.82 E-value=0.23 Score=45.50 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 478
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.82 E-value=0.33 Score=45.33 Aligned_cols=82 Identities=7% Similarity=0.062 Sum_probs=50.6
Q ss_pred CCCccEEEcccc-Cccc---cccChhhhcCCCcceEEEecCCcCC-----CCChhhhcccCCcEEEcCCcccCC--C---
Q 043214 444 CPQLKLLHMATE-DLSV---QQIPNNFFIGMTELRVLDFVAMHLP-----SLPSSLCLLSNLQTLCLDYGVFGD--V--- 509 (793)
Q Consensus 444 ~~~L~~L~l~~~-~~~~---~~~~~~~~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--~--- 509 (793)
-+.|+.|++.++ .+.. ..+. ..+..-+.|+.|+|++|.+. .+...+..-..|+.|+|++|.+.. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 345566666543 3221 0122 22456778888888888876 345556666789999999988765 2
Q ss_pred -cccccCCcccEEEecCC
Q 043214 510 -SIIGELKTLEILSFQGS 526 (793)
Q Consensus 510 -~~i~~l~~L~~L~l~~~ 526 (793)
..+..-..|++|+|+++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 33444455777777654
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.78 E-value=0.25 Score=47.47 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
..+||.|++|.||||+|+.+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987654
No 480
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.77 E-value=0.24 Score=45.93 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.5
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.+.+|+|..|.|||||+.+++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999998753
No 481
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.76 E-value=0.37 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.229 Sum_probs=21.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
....++.+-|-||+||||+|..+....
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 344567778999999999998877643
No 482
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.75 E-value=0.21 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.-|+|+|.+|+|||||+..+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 483
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.72 E-value=0.35 Score=44.71 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.....|+|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999998764
No 484
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.70 E-value=0.21 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.088 Sum_probs=20.3
Q ss_pred eEEEEEecCCChHHHHHHHHHhhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
--|.|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999998776643
No 485
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.66 E-value=0.26 Score=46.11 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.....|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998764
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.63 E-value=0.23 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.|+|+|.+|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 487
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.55 E-value=0.23 Score=44.88 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-|+|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998763
No 488
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.55 E-value=0.29 Score=45.09 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHhCC-CCceEEEEEecCCChHHHHHHHHHh
Q 043214 135 VLNALNN-PNVNMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 135 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
+.+.+.. .....|+|+|.+|+|||||...+.+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3333333 4567899999999999999988764
No 489
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.43 E-value=0.21 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999988654
No 490
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.42 E-value=0.23 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHhhhh
Q 043214 144 VNMIGVYGMAGVGKTKLVKEAPRLAK 169 (793)
Q Consensus 144 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 169 (793)
-.+++|+|..|.|||||++.+.--.+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 35899999999999999999876443
No 491
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.40 E-value=0.28 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHhhh
Q 043214 143 NVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 143 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
...+++|+|..|+|||||.+.+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999998743
No 492
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.40 E-value=0.23 Score=44.93 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.8
Q ss_pred EEEEEecCCChHHHHHHHHHh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~ 166 (793)
.|+|+|.+|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998754
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.39 E-value=0.28 Score=44.92 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.....|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998653
No 494
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.28 E-value=0.23 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999988754
No 495
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.23 E-value=0.24 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.6
Q ss_pred eEEEEEecCCChHHHHHHHHHh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPR 166 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~ 166 (793)
-.|+|+|.+|+|||||+..+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999999875
No 496
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.23 E-value=0.24 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.2
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998764
No 497
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.15 E-value=0.25 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHHhh
Q 043214 146 MIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 146 vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-|.|+|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988754
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.13 E-value=0.28 Score=46.89 Aligned_cols=26 Identities=23% Similarity=0.120 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHhh
Q 043214 142 PNVNMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 142 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
.....|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998764
No 499
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.11 E-value=0.26 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHhh
Q 043214 145 NMIGVYGMAGVGKTKLVKEAPRL 167 (793)
Q Consensus 145 ~vi~I~G~gGiGKTtLa~~v~~~ 167 (793)
-.|+|+|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999887653
No 500
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.04 E-value=0.56 Score=48.51 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHhhh
Q 043214 141 NPNVNMIGVYGMAGVGKTKLVKEAPRLA 168 (793)
Q Consensus 141 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 168 (793)
..+..+|+|+|.+|.|||||+..+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999987543
Done!