Query 043218
Match_columns 226
No_of_seqs 108 out of 1179
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 1.4E-40 3.1E-45 253.8 24.2 215 3-217 8-226 (231)
2 PRK09481 sspA stringent starva 100.0 2.4E-38 5.2E-43 246.2 22.4 195 4-205 10-205 (211)
3 PLN02473 glutathione S-transfe 100.0 7.4E-35 1.6E-39 227.1 19.0 191 5-201 3-210 (214)
4 PRK15113 glutathione S-transfe 100.0 3.8E-34 8.2E-39 223.1 19.5 192 1-204 1-210 (214)
5 PLN02395 glutathione S-transfe 100.0 2.1E-33 4.6E-38 219.0 19.3 193 1-202 1-210 (215)
6 PRK13972 GSH-dependent disulfi 100.0 1.6E-33 3.5E-38 219.8 17.1 187 4-202 1-205 (215)
7 PRK10542 glutathionine S-trans 100.0 1.7E-33 3.8E-38 217.3 16.9 188 5-202 1-197 (201)
8 PRK10357 putative glutathione 100.0 1.3E-32 2.7E-37 212.7 20.9 191 5-202 1-200 (202)
9 COG0625 Gst Glutathione S-tran 100.0 8E-33 1.7E-37 215.2 19.3 184 5-197 1-199 (211)
10 TIGR01262 maiA maleylacetoacet 100.0 6.3E-33 1.4E-37 215.6 18.6 189 6-203 1-205 (210)
11 TIGR00862 O-ClC intracellular 100.0 5.9E-32 1.3E-36 211.4 22.3 194 10-215 16-233 (236)
12 KOG0868 Glutathione S-transfer 100.0 7.1E-33 1.5E-37 199.5 14.3 193 2-203 3-208 (217)
13 PRK11752 putative S-transferas 100.0 1.3E-31 2.9E-36 214.6 20.5 195 4-203 44-259 (264)
14 PTZ00057 glutathione s-transfe 100.0 1.6E-31 3.5E-36 206.9 18.1 191 1-205 1-202 (205)
15 PLN02378 glutathione S-transfe 100.0 5.9E-31 1.3E-35 204.8 19.4 184 9-206 16-203 (213)
16 PLN02817 glutathione dehydroge 100.0 1.7E-30 3.7E-35 207.3 20.2 183 11-207 71-256 (265)
17 KOG0867 Glutathione S-transfer 100.0 5.8E-30 1.3E-34 200.3 17.7 194 4-203 2-210 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 5.7E-30 1.2E-34 199.0 16.3 178 5-197 1-208 (210)
19 KOG1695 Glutathione S-transfer 100.0 8.7E-28 1.9E-32 182.6 16.8 194 1-205 1-203 (206)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 7.7E-28 1.7E-32 186.8 16.1 176 6-197 1-207 (209)
21 KOG4420 Uncharacterized conser 99.9 1.8E-24 3.9E-29 164.9 13.1 201 4-208 26-293 (325)
22 KOG1422 Intracellular Cl- chan 99.9 1.9E-22 4.1E-27 149.7 17.5 193 11-213 19-216 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 1.8E-22 3.9E-27 179.4 17.0 157 1-195 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 5.6E-20 1.2E-24 119.4 8.3 74 7-81 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 7.5E-19 1.6E-23 113.5 8.8 73 5-78 1-73 (73)
26 KOG4244 Failed axon connection 99.8 4.6E-18 1E-22 130.7 14.1 176 5-192 46-272 (281)
27 cd03058 GST_N_Tau GST_N family 99.8 1.1E-18 2.5E-23 113.0 8.6 74 5-78 1-74 (74)
28 cd03052 GST_N_GDAP1 GST_N fami 99.8 1.1E-18 2.4E-23 112.5 7.9 70 5-75 1-73 (73)
29 cd03061 GST_N_CLIC GST_N famil 99.8 1.5E-18 3.3E-23 115.3 8.3 70 11-81 20-89 (91)
30 cd03041 GST_N_2GST_N GST_N fam 99.8 2.4E-18 5.1E-23 112.3 8.0 74 4-78 1-77 (77)
31 cd03185 GST_C_Tau GST_C family 99.8 3.8E-17 8.1E-22 116.7 13.7 123 89-212 2-125 (126)
32 cd03060 GST_N_Omega_like GST_N 99.8 4.7E-18 1E-22 109.2 8.0 69 5-74 1-70 (71)
33 cd03045 GST_N_Delta_Epsilon GS 99.7 6.6E-18 1.4E-22 109.4 8.1 71 5-76 1-74 (74)
34 cd03053 GST_N_Phi GST_N family 99.7 1.1E-17 2.3E-22 108.9 8.6 72 5-77 2-76 (76)
35 cd03076 GST_N_Pi GST_N family, 99.7 7E-18 1.5E-22 108.9 7.0 72 5-77 2-73 (73)
36 cd03055 GST_N_Omega GST_N fami 99.7 1.3E-17 2.7E-22 111.9 8.4 73 2-75 16-89 (89)
37 cd03050 GST_N_Theta GST_N fami 99.7 1.8E-17 3.8E-22 107.9 8.8 73 5-78 1-76 (76)
38 cd03048 GST_N_Ure2p_like GST_N 99.7 2.8E-17 6E-22 108.4 8.6 74 4-79 1-80 (81)
39 COG2999 GrxB Glutaredoxin 2 [P 99.7 1.8E-16 4E-21 114.8 13.3 180 5-196 1-207 (215)
40 KOG3029 Glutathione S-transfer 99.7 1.8E-16 3.8E-21 122.8 13.9 180 4-192 90-354 (370)
41 cd03056 GST_N_4 GST_N family, 99.7 3.2E-17 7E-22 105.8 7.9 70 5-75 1-73 (73)
42 cd03044 GST_N_EF1Bgamma GST_N 99.7 3.7E-17 8.1E-22 106.1 7.9 70 6-76 2-74 (75)
43 cd03037 GST_N_GRX2 GST_N famil 99.7 3E-17 6.6E-22 105.4 7.3 70 5-76 1-71 (71)
44 cd03039 GST_N_Sigma_like GST_N 99.7 2.5E-17 5.3E-22 106.1 6.8 71 5-76 1-72 (72)
45 cd03049 GST_N_3 GST_N family, 99.7 4.7E-17 1E-21 105.1 7.5 70 5-75 1-73 (73)
46 COG0435 ECM4 Predicted glutath 99.7 5.5E-17 1.2E-21 125.3 9.0 203 3-208 50-292 (324)
47 cd03051 GST_N_GTT2_like GST_N 99.7 5.8E-17 1.2E-21 104.8 7.3 70 5-75 1-74 (74)
48 cd03047 GST_N_2 GST_N family, 99.7 8.1E-17 1.8E-21 103.9 7.8 70 5-75 1-73 (73)
49 cd03046 GST_N_GTT1_like GST_N 99.7 1.4E-16 3E-21 103.6 8.5 73 5-79 1-76 (76)
50 cd03042 GST_N_Zeta GST_N famil 99.7 1.3E-16 2.8E-21 102.9 7.8 70 5-75 1-73 (73)
51 cd03057 GST_N_Beta GST_N famil 99.7 1.7E-16 3.7E-21 103.5 8.3 73 5-79 1-77 (77)
52 cd03080 GST_N_Metaxin_like GST 99.7 2E-16 4.3E-21 102.7 8.3 68 4-79 1-75 (75)
53 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.7E-16 3.6E-21 103.6 7.6 72 4-78 1-76 (77)
54 cd03190 GST_C_ECM4_like GST_C 99.7 1.2E-15 2.6E-20 111.2 11.7 124 90-215 4-131 (142)
55 cd03184 GST_C_Omega GST_C fami 99.7 1.7E-15 3.6E-20 108.0 11.9 118 90-211 2-122 (124)
56 PF13409 GST_N_2: Glutathione 99.7 3.5E-16 7.6E-21 100.0 7.4 65 12-77 1-70 (70)
57 cd03077 GST_N_Alpha GST_N fami 99.7 5.7E-16 1.2E-20 101.5 8.5 72 4-79 1-77 (79)
58 cd03186 GST_C_SspA GST_N famil 99.7 2.2E-15 4.8E-20 104.5 12.0 104 89-199 2-106 (107)
59 cd03075 GST_N_Mu GST_N family, 99.7 5.9E-16 1.3E-20 102.1 7.7 73 5-78 1-82 (82)
60 cd03196 GST_C_5 GST_C family, 99.6 3.5E-15 7.5E-20 104.9 11.0 108 87-199 3-114 (115)
61 cd03038 GST_N_etherase_LigE GS 99.6 1.4E-15 3.1E-20 100.8 7.8 67 11-79 14-84 (84)
62 cd00570 GST_N_family Glutathio 99.6 4.9E-15 1.1E-19 94.2 7.9 70 5-75 1-71 (71)
63 cd03043 GST_N_1 GST_N family, 99.6 4.3E-15 9.3E-20 95.8 7.6 67 8-75 5-73 (73)
64 PF02798 GST_N: Glutathione S- 99.6 6.2E-15 1.4E-19 95.8 7.6 72 5-76 1-76 (76)
65 KOG2903 Predicted glutathione 99.6 6.4E-15 1.4E-19 113.0 7.4 194 3-201 36-287 (319)
66 cd03188 GST_C_Beta GST_C famil 99.6 2E-14 4.3E-19 100.7 9.3 103 90-200 2-114 (114)
67 cd03198 GST_C_CLIC GST_C famil 99.6 7E-14 1.5E-18 99.9 12.1 106 101-209 7-131 (134)
68 cd03054 GST_N_Metaxin GST_N fa 99.6 1.8E-14 3.9E-19 92.7 7.8 65 5-77 1-72 (72)
69 cd03201 GST_C_DHAR GST_C famil 99.5 1.1E-13 2.4E-18 98.0 11.5 104 103-210 12-118 (121)
70 cd03189 GST_C_GTT1_like GST_C 99.5 1.2E-13 2.5E-18 97.6 10.9 102 85-194 2-119 (119)
71 cd03209 GST_C_Mu GST_C family, 99.5 1E-13 2.2E-18 98.3 10.6 108 90-205 2-112 (121)
72 cd03203 GST_C_Lambda GST_C fam 99.5 3.1E-13 6.6E-18 95.7 12.8 114 87-210 1-119 (120)
73 cd03182 GST_C_GTT2_like GST_C 99.5 2.4E-13 5.1E-18 95.7 12.2 103 87-196 1-117 (117)
74 cd03187 GST_C_Phi GST_C family 99.5 1E-13 2.3E-18 97.6 9.8 105 90-200 2-118 (118)
75 cd03177 GST_C_Delta_Epsilon GS 99.5 1.4E-13 3E-18 97.2 9.2 104 90-200 2-110 (118)
76 cd03191 GST_C_Zeta GST_C famil 99.5 1.3E-13 2.8E-18 97.7 9.1 106 89-202 2-119 (121)
77 cd03208 GST_C_Alpha GST_C fami 99.5 4E-13 8.6E-18 97.3 11.0 108 90-205 3-118 (137)
78 cd03181 GST_C_EFB1gamma GST_C 99.5 3.4E-13 7.3E-18 95.8 9.8 109 91-204 2-118 (123)
79 cd03178 GST_C_Ure2p_like GST_C 99.5 1.6E-13 3.4E-18 96.0 7.3 103 91-200 2-112 (113)
80 cd03210 GST_C_Pi GST_C family, 99.5 6.9E-13 1.5E-17 94.7 10.5 107 90-204 3-114 (126)
81 cd03180 GST_C_2 GST_C family, 99.5 8.1E-13 1.8E-17 91.8 10.4 99 90-196 2-110 (110)
82 cd03207 GST_C_8 GST_C family, 99.4 2.9E-13 6.2E-18 93.2 6.8 74 119-201 27-101 (103)
83 cd03200 GST_C_JTV1 GST_C famil 99.4 9.3E-13 2E-17 89.4 9.1 94 71-192 1-95 (96)
84 KOG3027 Mitochondrial outer me 99.4 1.4E-11 3.1E-16 91.6 14.9 169 13-192 34-247 (257)
85 cd03183 GST_C_Theta GST_C fami 99.4 2.3E-12 5.1E-17 91.9 9.5 103 91-200 2-120 (126)
86 PF00043 GST_C: Glutathione S- 99.4 1.9E-12 4.1E-17 87.6 7.9 70 119-194 25-95 (95)
87 cd03195 GST_C_4 GST_C family, 99.3 9.6E-12 2.1E-16 87.2 9.7 102 89-201 2-112 (114)
88 cd03206 GST_C_7 GST_C family, 99.3 6.4E-12 1.4E-16 86.0 8.2 70 119-196 30-100 (100)
89 PF13410 GST_C_2: Glutathione 99.3 5.6E-12 1.2E-16 80.2 7.3 67 118-189 2-69 (69)
90 cd03079 GST_N_Metaxin2 GST_N f 99.3 2.5E-11 5.4E-16 77.5 7.1 60 11-77 15-74 (74)
91 cd03204 GST_C_GDAP1 GST_C fami 99.3 3.5E-11 7.6E-16 83.4 8.0 75 117-196 24-111 (111)
92 cd03192 GST_C_Sigma_like GST_C 99.2 8.2E-11 1.8E-15 80.9 9.3 94 90-190 2-104 (104)
93 cd03179 GST_C_1 GST_C family, 99.2 3E-11 6.5E-16 83.2 6.3 94 90-191 2-105 (105)
94 PF14497 GST_C_3: Glutathione 99.2 1.7E-11 3.6E-16 83.8 4.8 94 88-192 3-99 (99)
95 TIGR02190 GlrX-dom Glutaredoxi 99.2 7.9E-11 1.7E-15 77.0 7.4 72 3-75 8-79 (79)
96 KOG3028 Translocase of outer m 99.2 2.5E-09 5.4E-14 84.9 16.6 171 12-192 16-233 (313)
97 cd00299 GST_C_family Glutathio 99.2 8.7E-11 1.9E-15 79.8 6.8 91 95-190 2-100 (100)
98 PRK10638 glutaredoxin 3; Provi 99.1 2.4E-10 5.3E-15 75.4 7.8 73 1-75 1-74 (83)
99 cd03194 GST_C_3 GST_C family, 99.1 5.7E-10 1.2E-14 78.2 9.8 72 119-201 38-113 (114)
100 cd03202 GST_C_etherase_LigE GS 99.1 2.4E-10 5.2E-15 81.3 7.4 67 120-192 56-123 (124)
101 cd03193 GST_C_Metaxin GST_C fa 99.1 2.7E-10 5.8E-15 76.0 6.8 67 122-191 19-88 (88)
102 cd03029 GRX_hybridPRX5 Glutare 99.1 1E-09 2.2E-14 70.3 7.8 72 3-75 1-72 (72)
103 cd03078 GST_N_Metaxin1_like GS 99.0 1.4E-09 3E-14 69.8 7.4 58 12-77 15-72 (73)
104 cd03211 GST_C_Metaxin2 GST_C f 98.9 8.9E-09 1.9E-13 73.4 9.0 72 118-191 53-126 (126)
105 cd03197 GST_C_mPGES2 GST_C fam 98.9 3E-08 6.5E-13 71.7 9.4 115 61-192 28-145 (149)
106 cd03027 GRX_DEP Glutaredoxin ( 98.8 1.8E-08 4E-13 64.6 6.9 68 4-72 2-70 (73)
107 cd03205 GST_C_6 GST_C family, 98.8 3.4E-08 7.3E-13 67.2 8.5 66 117-190 32-98 (98)
108 PRK10329 glutaredoxin-like pro 98.8 2E-08 4.4E-13 65.7 6.4 61 4-65 2-62 (81)
109 cd03212 GST_C_Metaxin1_3 GST_C 98.8 2E-08 4.3E-13 72.6 6.1 73 118-192 60-134 (137)
110 TIGR02196 GlrX_YruB Glutaredox 98.7 4.6E-08 1E-12 62.4 6.7 70 4-74 1-73 (74)
111 cd02976 NrdH NrdH-redoxin (Nrd 98.7 6E-08 1.3E-12 61.8 6.1 62 4-66 1-63 (73)
112 cd02066 GRX_family Glutaredoxi 98.7 9.7E-08 2.1E-12 60.5 7.0 69 4-73 1-70 (72)
113 cd03418 GRX_GRXb_1_3_like Glut 98.6 2E-07 4.3E-12 60.0 7.2 71 4-74 1-72 (75)
114 PF14834 GST_C_4: Glutathione 98.6 1.9E-06 4.1E-11 58.9 11.3 102 87-199 1-111 (117)
115 COG0695 GrxC Glutaredoxin and 98.6 4.3E-07 9.4E-12 59.2 7.3 69 4-73 2-73 (80)
116 TIGR02194 GlrX_NrdH Glutaredox 98.5 3.3E-07 7.1E-12 58.6 5.8 57 5-62 1-57 (72)
117 TIGR02181 GRX_bact Glutaredoxi 98.5 5.3E-07 1.2E-11 58.6 6.9 71 5-76 1-72 (79)
118 PRK11200 grxA glutaredoxin 1; 98.5 1.2E-06 2.6E-11 57.9 7.5 75 4-79 2-84 (85)
119 TIGR02200 GlrX_actino Glutared 98.4 5.6E-07 1.2E-11 58.0 5.8 63 4-67 1-66 (77)
120 TIGR02189 GlrX-like_plant Glut 98.4 3.6E-06 7.8E-11 57.3 8.5 70 3-73 8-81 (99)
121 PF00462 Glutaredoxin: Glutare 98.4 8E-07 1.7E-11 54.6 4.6 59 5-64 1-60 (60)
122 cd03419 GRX_GRXh_1_2_like Glut 98.4 3.7E-06 8.1E-11 54.9 8.0 72 4-76 1-76 (82)
123 PHA03050 glutaredoxin; Provisi 98.3 4.2E-06 9E-11 57.8 8.1 69 3-72 13-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.3 4.3E-06 9.3E-11 55.4 7.5 75 5-79 2-83 (86)
125 TIGR02180 GRX_euk Glutaredoxin 98.1 2.7E-05 5.8E-10 51.0 8.0 71 5-76 1-77 (84)
126 TIGR00365 monothiol glutaredox 98.1 2.2E-05 4.7E-10 53.2 7.4 71 3-74 12-88 (97)
127 cd03028 GRX_PICOT_like Glutare 98.0 4.2E-05 9.1E-10 51.0 7.3 71 3-74 8-84 (90)
128 PF10568 Tom37: Outer mitochon 97.9 5.5E-05 1.2E-09 48.1 6.7 55 12-74 13-71 (72)
129 PRK12759 bifunctional gluaredo 97.7 0.00013 2.7E-09 62.4 7.8 70 1-72 1-79 (410)
130 KOG1147 Glutamyl-tRNA syntheta 97.7 3E-05 6.5E-10 66.3 3.7 118 59-200 43-162 (712)
131 PRK10824 glutaredoxin-4; Provi 97.4 0.00083 1.8E-08 46.8 7.2 70 3-73 15-90 (115)
132 cd03031 GRX_GRX_like Glutaredo 97.4 0.00089 1.9E-08 48.8 7.3 69 4-73 1-80 (147)
133 KOG1752 Glutaredoxin and relat 97.2 0.0027 5.8E-08 43.4 7.2 71 3-74 14-88 (104)
134 PF04399 Glutaredoxin2_C: Glut 97.1 0.0022 4.8E-08 45.7 6.6 67 120-196 57-124 (132)
135 cd02973 TRX_GRX_like Thioredox 97.1 0.0021 4.5E-08 40.0 5.6 58 4-65 2-64 (67)
136 cd03036 ArsC_like Arsenate Red 96.9 0.0013 2.8E-08 45.7 3.9 33 5-37 1-33 (111)
137 PRK01655 spxA transcriptional 96.9 0.0015 3.3E-08 46.7 4.3 33 4-36 1-33 (131)
138 PTZ00062 glutaredoxin; Provisi 96.9 0.0053 1.1E-07 47.3 7.3 69 3-72 113-187 (204)
139 cd02977 ArsC_family Arsenate R 96.9 0.0017 3.7E-08 44.5 4.0 32 5-36 1-32 (105)
140 cd03032 ArsC_Spx Arsenate Redu 96.8 0.0023 4.9E-08 44.7 4.4 32 5-36 2-33 (115)
141 cd03199 GST_C_GRX2 GST_C famil 96.7 0.0078 1.7E-07 42.6 6.7 67 120-196 58-125 (128)
142 COG4545 Glutaredoxin-related p 96.7 0.0075 1.6E-07 37.9 5.6 63 1-65 1-77 (85)
143 PRK10026 arsenate reductase; P 96.6 0.0037 7.9E-08 45.2 4.5 34 1-35 1-34 (141)
144 PRK13344 spxA transcriptional 96.5 0.0049 1.1E-07 44.1 4.4 33 4-36 1-33 (132)
145 TIGR01617 arsC_related transcr 96.5 0.0046 9.9E-08 43.3 4.1 32 5-36 1-32 (117)
146 PRK12559 transcriptional regul 96.4 0.0066 1.4E-07 43.4 4.9 33 4-36 1-33 (131)
147 cd03035 ArsC_Yffb Arsenate Red 96.1 0.0094 2E-07 40.9 4.0 32 5-36 1-32 (105)
148 cd03033 ArsC_15kD Arsenate Red 95.9 0.014 3E-07 40.6 4.1 32 5-36 2-33 (113)
149 PF05768 DUF836: Glutaredoxin- 95.8 0.048 1E-06 35.4 6.3 55 4-61 1-57 (81)
150 COG1393 ArsC Arsenate reductas 95.8 0.017 3.7E-07 40.4 4.3 33 4-36 2-34 (117)
151 TIGR00412 redox_disulf_2 small 95.7 0.058 1.2E-06 34.5 6.3 55 5-65 3-61 (76)
152 TIGR00411 redox_disulf_1 small 95.5 0.066 1.4E-06 34.3 6.0 57 4-62 2-62 (82)
153 PRK10853 putative reductase; P 95.3 0.031 6.6E-07 39.2 4.2 31 5-35 2-32 (118)
154 TIGR01616 nitro_assoc nitrogen 94.9 0.051 1.1E-06 38.5 4.3 32 4-35 2-33 (126)
155 PHA02125 thioredoxin-like prot 94.6 0.14 3.1E-06 32.5 5.6 51 5-59 2-52 (75)
156 cd03034 ArsC_ArsC Arsenate Red 94.5 0.065 1.4E-06 37.2 4.0 31 5-35 1-31 (112)
157 cd01659 TRX_superfamily Thiore 94.4 0.1 2.2E-06 30.7 4.5 54 5-59 1-59 (69)
158 TIGR00014 arsC arsenate reduct 94.4 0.068 1.5E-06 37.2 4.0 32 5-36 1-32 (114)
159 PF11287 DUF3088: Protein of u 94.2 0.18 3.9E-06 34.6 5.4 68 12-79 23-108 (112)
160 cd03026 AhpF_NTD_C TRX-GRX-lik 92.9 0.22 4.7E-06 33.0 4.2 60 4-65 15-77 (89)
161 COG0278 Glutaredoxin-related p 92.1 0.65 1.4E-05 31.2 5.5 71 4-75 16-93 (105)
162 cd03030 GRX_SH3BGR Glutaredoxi 91.8 0.71 1.5E-05 30.7 5.6 67 5-72 2-79 (92)
163 PF04908 SH3BGR: SH3-binding, 89.0 1.6 3.5E-05 29.5 5.4 69 1-72 1-85 (99)
164 PF13192 Thioredoxin_3: Thiore 89.0 1.6 3.4E-05 27.7 5.3 56 5-66 3-62 (76)
165 PF11801 Tom37_C: Tom37 C-term 88.8 1.3 2.8E-05 33.1 5.4 37 126-162 112-153 (168)
166 PF03960 ArsC: ArsC family; I 87.1 0.84 1.8E-05 31.4 3.3 29 8-36 1-29 (110)
167 KOG1668 Elongation factor 1 be 78.3 1.5 3.3E-05 34.2 1.9 58 128-197 10-68 (231)
168 TIGR01295 PedC_BrcD bacterioci 76.9 14 0.0003 25.9 6.4 32 5-36 27-62 (122)
169 COG3019 Predicted metal-bindin 74.0 7.9 0.00017 27.8 4.4 76 3-78 26-104 (149)
170 cd02953 DsbDgamma DsbD gamma f 72.8 12 0.00025 25.0 5.1 52 5-58 15-77 (104)
171 KOG0911 Glutaredoxin-related p 71.4 11 0.00024 29.4 5.0 65 9-74 150-215 (227)
172 cd02949 TRX_NTR TRX domain, no 70.3 24 0.00052 23.1 6.1 58 5-64 17-80 (97)
173 cd02975 PfPDO_like_N Pyrococcu 69.6 12 0.00025 25.7 4.5 53 5-59 25-81 (113)
174 PF00085 Thioredoxin: Thioredo 69.4 28 0.00061 22.6 8.2 69 5-76 21-102 (103)
175 KOG3425 Uncharacterized conser 67.6 23 0.00049 24.9 5.4 68 10-77 42-122 (128)
176 TIGR02187 GlrX_arch Glutaredox 67.2 24 0.00052 27.3 6.3 55 4-60 136-193 (215)
177 PF09635 MetRS-N: MetRS-N bind 65.8 10 0.00022 26.6 3.4 27 53-79 35-63 (122)
178 PRK15317 alkyl hydroperoxide r 64.6 7.3 0.00016 34.6 3.3 72 4-77 119-197 (517)
179 cd02984 TRX_PICOT TRX domain, 63.1 38 0.00083 21.8 6.6 58 5-64 18-81 (97)
180 cd02989 Phd_like_TxnDC9 Phosdu 63.0 46 0.00099 22.7 6.8 59 5-65 26-89 (113)
181 cd02951 SoxW SoxW family; SoxW 62.1 23 0.0005 24.5 4.9 17 4-20 17-33 (125)
182 TIGR03140 AhpF alkyl hydropero 61.4 12 0.00027 33.1 4.1 61 4-66 120-183 (515)
183 cd02963 TRX_DnaJ TRX domain, D 60.8 46 0.00099 22.5 6.2 57 5-63 28-91 (111)
184 cd02993 PDI_a_APS_reductase PD 59.6 43 0.00093 22.5 5.8 54 4-58 24-83 (109)
185 cd02947 TRX_family TRX family; 58.3 42 0.00091 20.8 6.7 54 5-62 14-74 (93)
186 PHA03075 glutaredoxin-like pro 58.2 21 0.00045 24.8 3.8 70 1-78 1-70 (123)
187 PRK09381 trxA thioredoxin; Pro 58.2 53 0.0011 21.9 6.9 58 5-64 25-88 (109)
188 PF04134 DUF393: Protein of un 57.4 39 0.00084 22.9 5.4 69 7-77 1-77 (114)
189 PTZ00051 thioredoxin; Provisio 54.8 56 0.0012 21.1 6.0 57 5-63 22-83 (98)
190 PHA02278 thioredoxin-like prot 54.7 63 0.0014 21.7 6.8 59 5-64 18-85 (103)
191 TIGR03143 AhpF_homolog putativ 54.7 22 0.00048 31.9 4.6 57 4-65 479-541 (555)
192 PF06110 DUF953: Eukaryotic pr 53.4 22 0.00048 24.8 3.5 59 10-69 35-107 (119)
193 PF01323 DSBA: DSBA-like thior 53.2 25 0.00055 26.1 4.2 36 4-39 1-41 (193)
194 PF13098 Thioredoxin_2: Thiore 51.1 18 0.00038 24.3 2.8 21 4-24 8-28 (112)
195 COG3118 Thioredoxin domain-con 48.8 1.5E+02 0.0033 24.4 8.2 73 5-79 47-131 (304)
196 KOG2824 Glutaredoxin-related p 48.7 30 0.00065 27.9 3.9 57 15-72 149-210 (281)
197 cd03003 PDI_a_ERdj5_N PDIa fam 48.3 76 0.0016 20.7 5.6 53 5-59 22-78 (101)
198 cd02956 ybbN ybbN protein fami 47.8 51 0.0011 21.2 4.6 57 5-63 16-78 (96)
199 cd02957 Phd_like Phosducin (Ph 46.7 64 0.0014 21.8 5.1 59 5-66 28-91 (113)
200 cd02959 ERp19 Endoplasmic reti 46.2 95 0.0021 21.3 6.3 60 5-65 23-91 (117)
201 cd03020 DsbA_DsbC_DsbG DsbA fa 45.9 29 0.00062 26.3 3.5 22 4-25 80-101 (197)
202 TIGR02187 GlrX_arch Glutaredox 43.6 92 0.002 24.0 6.0 58 4-63 22-89 (215)
203 cd02948 TRX_NDPK TRX domain, T 43.1 96 0.0021 20.5 7.7 56 5-63 21-83 (102)
204 cd02954 DIM1 Dim1 family; Dim1 42.8 74 0.0016 22.0 4.8 56 7-64 20-81 (114)
205 cd03021 DsbA_GSTK DsbA family, 42.7 40 0.00086 25.8 3.9 35 3-37 1-39 (209)
206 cd02999 PDI_a_ERp44_like PDIa 42.1 97 0.0021 20.5 5.3 52 5-59 22-78 (100)
207 cd02994 PDI_a_TMX PDIa family, 41.2 99 0.0022 20.1 5.5 53 5-59 20-77 (101)
208 cd02987 Phd_like_Phd Phosducin 40.5 1.5E+02 0.0033 22.1 6.8 59 6-67 88-151 (175)
209 TIGR01126 pdi_dom protein disu 38.8 37 0.00081 22.0 2.8 53 4-58 16-74 (102)
210 cd02997 PDI_a_PDIR PDIa family 38.8 1.1E+02 0.0023 19.8 6.3 54 5-59 21-81 (104)
211 PRK10996 thioredoxin 2; Provis 38.7 1.4E+02 0.0031 21.1 6.8 58 5-64 56-119 (139)
212 PRK10877 protein disulfide iso 38.7 33 0.00072 27.0 2.9 22 4-25 110-131 (232)
213 cd03006 PDI_a_EFP1_N PDIa fami 37.8 64 0.0014 22.2 3.9 53 5-59 33-90 (113)
214 cd02950 TxlA TRX-like protein 37.3 1.5E+02 0.0033 21.1 6.6 59 5-64 24-90 (142)
215 COG4003 Uncharacterized protei 36.0 1E+02 0.0022 20.1 4.2 38 120-157 5-44 (98)
216 cd02962 TMX2 TMX2 family; comp 35.2 1.8E+02 0.0038 21.2 6.6 60 5-65 51-122 (152)
217 cd02952 TRP14_like Human TRX-r 33.4 1.7E+02 0.0036 20.4 6.5 55 11-66 38-105 (119)
218 PRK11657 dsbG disulfide isomer 32.5 45 0.00097 26.6 2.8 21 4-24 120-140 (251)
219 PF09868 DUF2095: Uncharacteri 31.9 39 0.00084 23.5 1.9 63 16-78 25-91 (128)
220 cd02996 PDI_a_ERp44 PDIa famil 31.9 1.2E+02 0.0026 20.1 4.5 56 5-62 22-89 (108)
221 PF14595 Thioredoxin_9: Thiore 31.4 56 0.0012 23.1 2.8 54 4-59 44-103 (129)
222 cd03004 PDI_a_ERdj5_C PDIa fam 31.4 74 0.0016 20.9 3.4 53 5-59 23-79 (104)
223 cd03000 PDI_a_TMX3 PDIa family 31.1 1.6E+02 0.0034 19.4 5.6 52 5-59 19-78 (104)
224 PRK09266 hypothetical protein; 31.0 82 0.0018 25.1 4.1 57 22-78 200-258 (266)
225 cd02985 TRX_CDSP32 TRX family, 30.6 1.6E+02 0.0035 19.4 6.3 59 5-64 19-84 (103)
226 cd02998 PDI_a_ERp38 PDIa famil 29.9 69 0.0015 20.7 3.0 54 5-59 22-81 (105)
227 KOG0190 Protein disulfide isom 29.9 2.2E+02 0.0048 25.4 6.6 73 5-79 46-133 (493)
228 cd04911 ACT_AKiii-YclM-BS_1 AC 29.5 63 0.0014 20.6 2.5 21 13-33 15-35 (76)
229 cd01068 sensor_globin Globin d 28.9 1.3E+02 0.0029 21.2 4.6 41 181-221 33-73 (147)
230 TIGR02681 phage_pRha phage reg 28.8 70 0.0015 21.9 2.8 25 54-78 2-27 (108)
231 PF13728 TraF: F plasmid trans 28.1 93 0.002 24.2 3.8 32 5-36 124-159 (215)
232 TIGR01068 thioredoxin thioredo 27.7 1.7E+02 0.0036 18.6 8.2 53 5-59 18-74 (101)
233 PF11732 Thoc2: Transcription- 27.7 1E+02 0.0022 19.7 3.3 43 140-191 34-76 (77)
234 PTZ00443 Thioredoxin domain-co 27.7 3E+02 0.0065 21.6 8.9 72 5-79 56-140 (224)
235 PF09413 DUF2007: Domain of un 27.6 69 0.0015 19.3 2.5 31 6-36 2-32 (67)
236 cd03002 PDI_a_MPD1_like PDI fa 27.3 1.8E+02 0.004 19.0 5.8 55 4-59 21-80 (109)
237 cd02972 DsbA_family DsbA famil 27.3 1.1E+02 0.0024 19.1 3.7 22 5-26 1-22 (98)
238 cd02965 HyaE HyaE family; HyaE 27.1 1.4E+02 0.0031 20.5 4.2 60 5-66 31-98 (111)
239 COG2761 FrnE Predicted dithiol 26.6 1.4E+02 0.003 23.5 4.4 27 4-30 7-37 (225)
240 PF12290 DUF3802: Protein of u 26.1 1.5E+02 0.0032 20.5 3.9 69 68-139 9-82 (113)
241 cd03025 DsbA_FrnE_like DsbA fa 26.1 1.1E+02 0.0025 22.6 4.0 30 4-33 2-37 (193)
242 KOG2501 Thioredoxin, nucleored 25.8 1.8E+02 0.0039 21.5 4.6 29 10-38 42-77 (157)
243 cd02955 SSP411 TRX domain, SSP 25.0 2.5E+02 0.0053 19.6 6.5 60 6-67 20-97 (124)
244 COG3011 Predicted thiol-disulf 24.9 2.7E+02 0.0059 20.1 7.3 75 2-78 7-87 (137)
245 PLN02309 5'-adenylylsulfate re 24.7 2.2E+02 0.0048 25.1 5.8 54 5-59 369-428 (457)
246 PRK13728 conjugal transfer pro 24.6 1.4E+02 0.003 22.7 4.0 30 5-36 73-106 (181)
247 cd03022 DsbA_HCCA_Iso DsbA fam 24.4 1.1E+02 0.0024 22.6 3.6 32 5-36 1-36 (192)
248 PF11563 Protoglobin: Protoglo 24.3 1.3E+02 0.0029 21.4 3.9 39 181-219 35-73 (158)
249 cd06891 PX_Vps17p The phosphoi 24.1 69 0.0015 23.1 2.2 27 180-210 111-137 (140)
250 cd02970 PRX_like2 Peroxiredoxi 23.5 1.4E+02 0.0029 20.9 3.8 50 10-61 33-89 (149)
251 cd02961 PDI_a_family Protein D 22.6 2.1E+02 0.0045 17.9 5.8 54 4-59 18-77 (101)
252 cd03023 DsbA_Com1_like DsbA fa 22.4 90 0.0019 21.9 2.6 20 4-23 8-27 (154)
253 cd03005 PDI_a_ERp46 PDIa famil 22.0 2.3E+02 0.0049 18.1 6.4 52 5-58 20-78 (102)
254 TIGR01130 ER_PDI_fam protein d 21.9 5.1E+02 0.011 22.1 7.7 73 5-79 22-110 (462)
255 cd02978 KaiB_like KaiB-like fa 21.8 2.2E+02 0.0048 17.9 3.9 54 4-59 3-61 (72)
256 PF11823 DUF3343: Protein of u 21.4 2E+02 0.0043 17.8 3.8 32 5-36 3-34 (73)
257 PF00731 AIRC: AIR carboxylase 21.2 1.3E+02 0.0029 22.0 3.2 28 12-39 12-39 (150)
258 KOG3131 Uncharacterized conser 20.2 1E+02 0.0022 24.6 2.6 21 4-24 155-175 (281)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=253.78 Aligned_cols=215 Identities=42% Similarity=0.691 Sum_probs=193.6
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCC-CC
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQ-HD 81 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~-~~ 81 (226)
+.++||+++.|||++|++++|.++||+|+.+.+++.+++++++..||.+++||||+++|++|+||..|++||++.++ .+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 46999999999999999999999999999999999999999999997779999999999999999999999999999 58
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhc-cChHhHHHHHHHHHHHHHHHh-hhc-CCCcccCCCCchhHHHHHHH
Q 043218 82 PLLPQDPYETAMARFWAKFAYEKLLESAYKAMW-SKGEEKQKTMKEAIESLEKIE-ELR-GKNFIGGNSIGYLDLAIGWI 158 (226)
Q Consensus 82 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le-~L~-~~~fl~G~~~t~aD~~~~~~ 158 (226)
+++|.|+.+|++++.|+++++..++.....++. ..++.++.....+...|+.+| .|+ +++|++|+++++.|+++++.
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~ 167 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPS 167 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhh
Confidence 999999999999999999999988877777766 455888889999999999999 998 78999999999999999977
Q ss_pred HhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHHHHHHHHHH
Q 043218 159 SYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAYFHKRAEEI 217 (226)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~ 217 (226)
+.+........++...+...++|+|.+|.+||.++|.+++++++.+.+.++++++++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 168 FERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred HHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 77666444432324555578999999999999999999999999999999999998763
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.4e-38 Score=246.24 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=167.0
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHDPL 83 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~~l 83 (226)
++|||+++.||+|++|+++|+++|++|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||++++|+..|
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 69999999999999999999999999999999988888899999999 89999999999999999999999999998889
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhh
Q 043218 84 LPQDPYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWL 162 (226)
Q Consensus 84 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~ 162 (226)
+|.++.+++.+++|+.+++..+............+..+.....+...+..+| .|++++|++|+++|+||+++++.+.++
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHH
Confidence 9999999999999998877655544333333334455677788999999999 999999999999999999999988766
Q ss_pred hhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhh
Q 043218 163 PVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDK 205 (226)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~ 205 (226)
.. . + .++. .+.+|+|.+|+++|.++|++++++...+.
T Consensus 169 ~~---~-~-~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 169 PV---L-G-IELS-GPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred Hh---c-C-CCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 32 2 3 4431 25799999999999999999999875443
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=7.4e-35 Score=227.14 Aligned_cols=191 Identities=19% Similarity=0.249 Sum_probs=156.8
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHD 81 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (226)
||||+++.||++++|+++|.++|++|+.+.++.. ..+++++++||. |++|+|+++|.+|+||.+|++||++++++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 8999999999999999999999999999998875 467888899999 899999999999999999999999999743
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHhhhhHHHH----HHhcc-------ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCC
Q 043218 82 --PLLPQDPYETAMARFWAKFAYEKLLESAY----KAMWS-------KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNS 147 (226)
Q Consensus 82 --~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~ 147 (226)
.|+|.++.+++++++|+.+..+.+..... ..++. ..+..+.....+.+.++.+| .|++++|++|++
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 161 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDE 161 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 68999999999999999888765543221 11111 12334556678889999999 999889999999
Q ss_pred CchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCC
Q 043218 148 IGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLP 201 (226)
Q Consensus 148 ~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~ 201 (226)
+|+||+++++.+.+....... ... .+++|+|.+|+++|.++|++++++.
T Consensus 162 ~t~ADi~~~~~~~~~~~~~~~---~~~--~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 162 FTLADLTHMPGMRYIMNETSL---SGL--VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred CCHHHHHHHHHHHHHHhcccc---HHH--HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 999999999988765321111 122 3689999999999999999998754
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=3.8e-34 Score=223.11 Aligned_cols=192 Identities=20% Similarity=0.192 Sum_probs=157.2
Q ss_pred CC-CceEEeccc--CChhHHHHHHHHHHcCCCceEEEcCCCC---CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 043218 1 MA-TKVKLLGFW--SSPPVFRVVWALKLKGVEFENIEEDIFN---KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYI 74 (226)
Q Consensus 1 M~-~~~~L~~~~--~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL 74 (226)
|+ ++++||+.+ .||+|++|+++|.++|++|+.+.+++.. ..++++++||. |+||+|++||.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 65 689999976 7999999999999999999999998763 56889999999 89999999999999999999999
Q ss_pred HhhCCCCC---CCCCCHHHHHHHHHHHHHHHhhhhHHHHH-----Hhcc--ChHhHHHHHHHHHHHHHHHh-hhcC-CCc
Q 043218 75 DVTWQHDP---LLPQDPYETAMARFWAKFAYEKLLESAYK-----AMWS--KGEEKQKTMKEAIESLEKIE-ELRG-KNF 142 (226)
Q Consensus 75 ~~~~~~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~le-~L~~-~~f 142 (226)
+++++++. ++|.++.+++++++|+.+....+.+.... .+.. ..+..+.....+.+.++.+| +|++ ++|
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99998765 99999999999999999987656543211 1111 12234566778899999999 9975 579
Q ss_pred ccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChh
Q 043218 143 IGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRD 204 (226)
Q Consensus 143 l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~ 204 (226)
++|+ +|+||+++++.+.++. .. + .++ .|+|.+|++|+.++|++++++++.+
T Consensus 160 l~G~-~TlADi~l~~~l~~~~---~~-~-~~~-----~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 160 LFGE-WCIADTDLALMLNRLV---LH-G-DEV-----PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred eeCC-ccHHHHHHHHHHHHHH---Hc-C-CCC-----CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 9996 9999999999987662 22 3 222 2999999999999999999876543
No 5
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=2.1e-33 Score=219.04 Aligned_cols=193 Identities=22% Similarity=0.313 Sum_probs=156.0
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
|+ +|||+.+.| +++|++++|.++|++|+.+.+++. ..+++++++||. |+||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MV--LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred Ce--EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHH
Confidence 66 899997664 799999999999999999999875 457889999999 89999999999999999999999999
Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHH----hc-------cChHhHHHHHHHHHHHHHHHh-hhcCCCcc
Q 043218 78 WQH--DPLLPQDPYETAMARFWAKFAYEKLLESAYKA----MW-------SKGEEKQKTMKEAIESLEKIE-ELRGKNFI 143 (226)
Q Consensus 78 ~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~l~~le-~L~~~~fl 143 (226)
+++ +.++|.++.+++++++|+.+.+..+.+.+... .+ ...+..+.....+.+.++.+| .|++++|+
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 975 36999999999999999998776554433221 11 122234556788889999999 99989999
Q ss_pred cCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCC
Q 043218 144 GGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPP 202 (226)
Q Consensus 144 ~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~ 202 (226)
+|+++|+||+++++.+.++.. .... ... ...+|+|.+|++++.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~--~~~~-~~~--~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVG--PIGK-AYL--IKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhc--ccch-hhh--hccCchHHHHHHHHHcChHHHHHHHH
Confidence 999999999999988766521 1101 111 46799999999999999999998653
No 6
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-33 Score=219.76 Aligned_cols=187 Identities=16% Similarity=0.220 Sum_probs=150.8
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC---CchhhhhcCCCCCcccEEEe-----CC--eeeeehHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN---KSTRLLELNPVHKKVPVLVH-----DD--KVIVDSFVILEY 73 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~~P~L~~-----~g--~~l~es~~I~~y 73 (226)
++|||+.+ +|+|++|+++|+++|++|+.+.+++.. ..++|+++||. |+||+|++ || .+|+||.+|++|
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 37999887 799999999999999999999998753 46889999999 89999997 45 479999999999
Q ss_pred HHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHh-c-c-----ChHhHHHHHHHHHHHHHHHh-hhcCCCcccC
Q 043218 74 IDVTWQHDPLLPQDPYETAMARFWAKFAYEKLLESAYKAM-W-S-----KGEEKQKTMKEAIESLEKIE-ELRGKNFIGG 145 (226)
Q Consensus 74 L~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G 145 (226)
|+++++ .+.|.++.+++++++|+.+..+.+.+.+.... + . .....+.....+.+.++.+| +|++++|++|
T Consensus 79 L~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 156 (215)
T PRK13972 79 LAEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGG 156 (215)
T ss_pred HHHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccC
Confidence 999986 36788899999999999998776655432211 1 0 12334556677889999999 9999999999
Q ss_pred CCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCC
Q 043218 146 NSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPP 202 (226)
Q Consensus 146 ~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~ 202 (226)
+++|+||+++++.+.... .. + .. .+.||+|.+|+++|.++|++++++..
T Consensus 157 d~~t~ADi~l~~~~~~~~---~~-~-~~---~~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 157 ENYSIADIACWPWVNAWT---RQ-R-ID---LAMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred CCCCHHHHHHHHHHHHHh---hc-C-Cc---chhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999999988764431 11 2 22 47899999999999999999887543
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=1.7e-33 Score=217.33 Aligned_cols=188 Identities=16% Similarity=0.279 Sum_probs=155.9
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC----CchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHhhCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN----KSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYIDVTWQ 79 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL~~~~~ 79 (226)
|+||+.+.| ++++++++|+++|++|+.+.|++.. .++++.++||. |++|+|++ ||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998866 7999999999999999999998752 45789999999 89999985 78999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHHhhhhHHHHHHhccC--hHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHH
Q 043218 80 HDPLL-PQDPYETAMARFWAKFAYEKLLESAYKAMWSK--GEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAI 155 (226)
Q Consensus 80 ~~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~ 155 (226)
++.++ |.++.+++++++|+.+..+.+.+.+...+... ++..+.....+.+.++.+| .|++++||+|+++|+||+++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l 158 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYL 158 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHH
Confidence 77766 56788999999999988776776555444322 2223455778899999999 99999999999999999999
Q ss_pred HHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCC
Q 043218 156 GWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPP 202 (226)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~ 202 (226)
++.+.+... . + .+ .+.+|+|.+|++++.++|++++++.+
T Consensus 159 ~~~~~~~~~---~-~-~~---~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 159 FTVLRWAYA---V-K-LN---LEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHhhc---c-C-CC---cccchHHHHHHHHHHcCHHHHHHHHH
Confidence 998877622 1 3 32 36799999999999999999998654
No 8
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=212.72 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=154.8
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLV-HDDKVIVDSFVILEYIDVTWQHDPL 83 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (226)
++||+++.||++++|+++|+++|++|+.+.++.....+++.+.||. |++|+|+ ++|.+|+||.+|++||+++++++.|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999988877666778889999 8999998 5789999999999999999987789
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhHHHHHHh---cc----ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHH
Q 043218 84 LPQDPYETAMARFWAKFAYEKLLESAYKAM---WS----KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAI 155 (226)
Q Consensus 84 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~ 155 (226)
+|.++.+++++++|..+..+.+........ .. ..+..+.....+.+.|+.+| +|++++ ++|+++|+||+++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l 158 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAI 158 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHH
Confidence 999999999999998877654433221111 11 12233456778999999999 998888 9999999999999
Q ss_pred HHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCC
Q 043218 156 GWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPP 202 (226)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~ 202 (226)
++.+.++.... . . ... ...+|+|.+|++++.++|+++++.+.
T Consensus 159 ~~~l~~~~~~~-~-~-~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 159 ACAVGYLNFRR-V-A-PGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHhcc-c-C-cch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 99988763311 1 1 111 35799999999999999999998754
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-33 Score=215.25 Aligned_cols=184 Identities=30% Similarity=0.459 Sum_probs=159.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC--CCchhhhhcCCCCCcccEEEeCCe-eeeehHHHHHHHHhhCCCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF--NKSTRLLELNPVHKKVPVLVHDDK-VIVDSFVILEYIDVTWQHD 81 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~~P~L~~~g~-~l~es~~I~~yL~~~~~~~ 81 (226)
++||+.+.||+|++|++++.++|++|+.+.|+.. ...++|+.+||. |+||+|++++. +|+||.+|++||++++|++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 6899999999999999999999999999999987 478899999999 89999998765 8999999999999999877
Q ss_pred CCCCCCHH---HHHHHHHHHHHHHhhhhHHHHHHhcc--------ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCc
Q 043218 82 PLLPQDPY---ETAMARFWAKFAYEKLLESAYKAMWS--------KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIG 149 (226)
Q Consensus 82 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t 149 (226)
.|+|.++. +++.+..|..+....+.+.+...... ..+..+.....+...++.+| .|++++|++|+++|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 79998874 78888899999877777777665443 24556777889999999999 99999999999999
Q ss_pred hhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhh
Q 043218 150 YLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIK 197 (226)
Q Consensus 150 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~ 197 (226)
+||+++++.+.++. .. + .. .+.+|+|.+|++|+.++|+++
T Consensus 160 iAD~~~~~~~~~~~---~~-~-~~---~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLA---LL-G-EE---LADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhh---hc-C-cc---cccChHHHHHHHHHHcCCchh
Confidence 99999999998862 22 2 22 267999999999999999965
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=6.3e-33 Score=215.65 Aligned_cols=189 Identities=25% Similarity=0.415 Sum_probs=154.8
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceEEEcCCC----CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 043218 6 KLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF----NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHD 81 (226)
Q Consensus 6 ~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (226)
+||+++.||++++++++|.++|++|+.+.++.. ...+++.++||. |++|+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998862 246789999999 899999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhHH----HHHHhcc----ChH-hHHHHHHHHHHHHHHHh-hhcC--CCcccCCCCc
Q 043218 82 PLLPQDPYETAMARFWAKFAYEKLLES----AYKAMWS----KGE-EKQKTMKEAIESLEKIE-ELRG--KNFIGGNSIG 149 (226)
Q Consensus 82 ~l~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~-~~~~~~~~~~~~l~~le-~L~~--~~fl~G~~~t 149 (226)
.|+|.++.+++++++|+.++...+.+. +...+.. ..+ ..+...+.+.+.|+.|| +|++ ++|++|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 899999999999999999886544432 1112211 122 22334567889999999 9986 5699999999
Q ss_pred hhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCCh
Q 043218 150 YLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPR 203 (226)
Q Consensus 150 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 203 (226)
+||+++++.+.+.. .. + .. .+.||+|++|+++|.++|+++++..+.
T Consensus 160 ~ADi~~~~~l~~~~---~~-~-~~---~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 160 LADLCLVPQVYNAE---RF-G-VD---LTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHHHHHHHHHHH---Hc-C-CC---cccchHHHHHHHHHhcCHHHHHhCccc
Confidence 99999999987763 22 2 22 368999999999999999999987654
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=5.9e-32 Score=211.37 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=157.1
Q ss_pred ccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCC---CCCCCC
Q 043218 10 FWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQH---DPLLPQ 86 (226)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~---~~l~p~ 86 (226)
.+.||+|++|+++|.++|++|+.+.+++..++++|+++||. |++|+|+++|.+|+||.+|++||+++++. +.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 46799999999999999999999999999888999999999 89999999999999999999999999964 446666
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhcc-ChHhHHHHHHHHHHHHHHHh-hhc------------------CCCcccCC
Q 043218 87 DPYETAMARFWAKFAYEKLLESAYKAMWS-KGEEKQKTMKEAIESLEKIE-ELR------------------GKNFIGGN 146 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le-~L~------------------~~~fl~G~ 146 (226)
++..++.. . .++..+..++.. .++..+...+.+.+.++.|| .|+ +++|+.|+
T Consensus 95 ~~~~~~~~---~-----~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd 166 (236)
T TIGR00862 95 HPESNTAG---L-----DIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD 166 (236)
T ss_pred CHHHHHHH---H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC
Confidence 66544322 1 133333333222 23344555667899999999 886 57999999
Q ss_pred CCchhHHHHHHHHhhhhhhH-hhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHHHHHHHH
Q 043218 147 SIGYLDLAIGWISYWLPVWE-EADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAYFHKRAE 215 (226)
Q Consensus 147 ~~t~aD~~~~~~l~~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (226)
++|+||+++++.+.++.... ...+ .++ .+++|+|.+|++++.++|+|+++.+...++.+..+.+.+
T Consensus 167 ~~tlaD~~l~p~l~~l~~~~~~~~~-~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~ 233 (236)
T TIGR00862 167 ELTLADCNLLPKLHIVKVVAKKYRN-FDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAK 233 (236)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhC-cCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhh
Confidence 99999999999999886542 3334 665 589999999999999999999999999999888877643
No 12
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-33 Score=199.52 Aligned_cols=193 Identities=25% Similarity=0.431 Sum_probs=162.9
Q ss_pred CCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC----CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 2 ATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF----NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 2 ~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
+.+++||+++.|.+++|||++|.++||+|+.+.|++. +...+|.++||+ ++||+|++||.+|+||.||+.||++.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhc
Confidence 4589999999999999999999999999999999986 345689999999 89999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhc---cChHh---HHHHHHHHHHHHHHHh-hhc--CCCcccCCCC
Q 043218 78 WQHDPLLPQDPYETAMARFWAKFAYEKLLESAYKAMW---SKGEE---KQKTMKEAIESLEKIE-ELR--GKNFIGGNSI 148 (226)
Q Consensus 78 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~l~~le-~L~--~~~fl~G~~~ 148 (226)
+|++.|+|.|+..|+.+++++..+...+.|.-....+ ..++. ..=+...+.+.|.+|| .|. .|+|-+||++
T Consensus 82 ~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDev 161 (217)
T KOG0868|consen 82 YPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEV 161 (217)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCcee
Confidence 9999999999999999999999887766664433222 11111 2334566778899999 885 4899999999
Q ss_pred chhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCCh
Q 043218 149 GYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPR 203 (226)
Q Consensus 149 t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 203 (226)
|+||+++.+.++...++ . . +...||-+.+-.+++.+.|.|+...++.
T Consensus 162 tiADl~L~pqv~nA~rf----~-v---dl~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 162 TIADLCLPPQVYNANRF----H-V---DLTPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred ehhhhccchhhhhhhhc----c-c---cCCcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 99999999999887432 2 2 3688999999999999999999887654
No 13
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.3e-31 Score=214.58 Aligned_cols=195 Identities=19% Similarity=0.248 Sum_probs=151.9
Q ss_pred ceEEecccCChhHHHHHHHHHHc------CCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeC----CeeeeehHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLK------GVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHD----DKVIVDSFVI 70 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~----g~~l~es~~I 70 (226)
.||||+.+ ||+|++|+++|+++ |++|+.+.|++. +..++|+++||. |+||+|+++ |.+|+||.+|
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 69999975 99999999999997 899999998875 346889999999 899999984 3689999999
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhh---HHHHHHhc-cC---hHhHHHHHHHHHHHHHHHh-hhcCCCc
Q 043218 71 LEYIDVTWQHDPLLPQDPYETAMARFWAKFAYEKLL---ESAYKAMW-SK---GEEKQKTMKEAIESLEKIE-ELRGKNF 142 (226)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~---~~~~~~~~~~~~~~l~~le-~L~~~~f 142 (226)
++||+++++ .|+|.++.+++++++|+.+....+. ..+...+. .. ....+....++.+.|+.+| +|++++|
T Consensus 122 l~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~f 199 (264)
T PRK11752 122 LLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEY 199 (264)
T ss_pred HHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999997 3899999999999999998765321 11111111 11 1233455677889999999 9998999
Q ss_pred ccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCCh
Q 043218 143 IGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPR 203 (226)
Q Consensus 143 l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 203 (226)
|+|+++|+|||++++.+.++........ ....+.+.||+|.+|+++|.++|+++++...+
T Consensus 200 l~Gd~~TlADi~l~~~l~~l~~~~~~~~-~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 200 IAGDEYTIADIAIWPWYGNLVLGNLYDA-AEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCccCHHHHHHHHHHHHHhhcccccc-ccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 9999999999999988766632110101 11122468999999999999999999976554
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=1.6e-31 Score=206.94 Aligned_cols=191 Identities=17% Similarity=0.189 Sum_probs=143.6
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhh--------hcCCCCCcccEEEeCCeeeeehHHHHH
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLL--------ELNPVHKKVPVLVHDDKVIVDSFVILE 72 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~~P~L~~~g~~l~es~~I~~ 72 (226)
|+++++||+++.++++++||++|+++|++|+.+.++. ... .+. ..||+ |++|+|++||.+|+||.+|++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~~-~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NGD-AFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cch-HHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 8888999999999999999999999999999987642 112 222 47999 899999999999999999999
Q ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcC--CCcccCCCCc
Q 043218 73 YIDVTWQHDPLLPQDPYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRG--KNFIGGNSIG 149 (226)
Q Consensus 73 yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~--~~fl~G~~~t 149 (226)
||+++++ +.+.+..++..++.+.....+ +...+...........+.....+.+.++.+| .|++ ++|++|+++|
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T 153 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQD-IHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLT 153 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCccc
Confidence 9999997 555566555555544433322 2222211111012223445678889999999 9975 3799999999
Q ss_pred hhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhh
Q 043218 150 YLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDK 205 (226)
Q Consensus 150 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~ 205 (226)
+||+++++.+.++.. ..+ .. .+.||+|.+|++|++++|+++++++++.+
T Consensus 154 ~AD~~l~~~~~~~~~---~~~-~~---l~~~P~l~~~~~r~~~~P~~k~y~~~~~~ 202 (205)
T PTZ00057 154 YADLAVFNLYDDIET---KYP-NS---LKNFPLLKAHNEFISNLPNIKNYISNRKE 202 (205)
T ss_pred HHHHHHHHHHHHHHH---hCh-hh---hccChhHHHHHHHHHhChHHHHHHHhCCC
Confidence 999999998877632 112 22 47899999999999999999999877653
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=99.98 E-value=5.9e-31 Score=204.85 Aligned_cols=184 Identities=22% Similarity=0.302 Sum_probs=143.3
Q ss_pred cccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCCCCH
Q 043218 9 GFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHDPLLPQDP 88 (226)
Q Consensus 9 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~ 88 (226)
++..||||+||+++|+++|++|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||++++++..+. ++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~--~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK--TP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--CH
Confidence 455699999999999999999999999998888899999999 899999999999999999999999999876553 55
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhc--CCCcccCCCCchhHHHHHHHHhhhhhh
Q 043218 89 YETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELR--GKNFIGGNSIGYLDLAIGWISYWLPVW 165 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~--~~~fl~G~~~t~aD~~~~~~l~~~~~~ 165 (226)
.+++.+...+ ...+...+... ...+.....+.+.|+.+| .|+ +++|++|+++|+||+++++.+.++...
T Consensus 93 ~~~a~i~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~ 164 (213)
T PLN02378 93 AEFASVGSNI-------FGTFGTFLKSK-DSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVA 164 (213)
T ss_pred HHHHHHHHHH-------HHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHH
Confidence 5666554322 22222222221 122344567788899999 997 479999999999999999998876432
Q ss_pred Hh-hhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhH
Q 043218 166 EE-ADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKT 206 (226)
Q Consensus 166 ~~-~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~ 206 (226)
.. ... .+. .+.||+|.+|+++|.++|++++++......
T Consensus 165 ~~~~~~-~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~ 203 (213)
T PLN02378 165 LGHFKS-WSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYV 203 (213)
T ss_pred HHHhcC-CCc--hhHhHHHHHHHHHHhcCCCeecccCChHHH
Confidence 21 112 222 368999999999999999999998777653
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=1.7e-30 Score=207.32 Aligned_cols=183 Identities=21% Similarity=0.286 Sum_probs=143.7
Q ss_pred cCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCCCCHHH
Q 043218 11 WSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHDPLLPQDPYE 90 (226)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~~~ 90 (226)
..||||++++++|+++|++|+.+.+++.+++++|+++||. |++|+|+++|.+|+||.+|++||++++|++.+. ++.+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~e 147 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPPE 147 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHHH
Confidence 3499999999999999999999999998888999999999 899999999999999999999999999876664 5667
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcC-CCcccCCCCchhHHHHHHHHhhhhhhHh-
Q 043218 91 TAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRG-KNFIGGNSIGYLDLAIGWISYWLPVWEE- 167 (226)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~-~~fl~G~~~t~aD~~~~~~l~~~~~~~~- 167 (226)
++.++.++. ..+...+.... ..+.....+.+.+..+| .|++ ++|++|+++|+||+++++.+.++.....
T Consensus 148 ra~i~~~l~-------~~~~~~~~~~~-~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~ 219 (265)
T PLN02817 148 KASVGSKIF-------STFIGFLKSKD-PGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGH 219 (265)
T ss_pred HHHHHHHHH-------HHHHHHhccCC-cchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777665432 22222222211 11223456778899999 9974 7999999999999999999987753322
Q ss_pred hhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHH
Q 043218 168 ADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTL 207 (226)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~ 207 (226)
..+ .++ .+.+|+|.+|++++.++|+|+++.+..++..
T Consensus 220 ~~~-~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~ 256 (265)
T PLN02817 220 YKN-WSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVI 256 (265)
T ss_pred hcC-CCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHH
Confidence 112 233 4789999999999999999999988765533
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-30 Score=200.32 Aligned_cols=194 Identities=27% Similarity=0.400 Sum_probs=165.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCC-
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQ- 79 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~- 79 (226)
.++||+++.||.|++|.+++.++|++|+...+++. +.+++|+++||. |+||+|+++|..++||.+|+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999988875 689999999999 8999999999999999999999999996
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHhhhhHHH--HHHhcc-------ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCC
Q 043218 80 HDP-LLPQDPYETAMARFWAKFAYEKLLESA--YKAMWS-------KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSI 148 (226)
Q Consensus 80 ~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~ 148 (226)
... ++|.+..+++.+++|+.+.++.+.+.. ..++.. ...........+...++.+| .|.++.|+.|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 334 899999999999999999888777763 222221 55667888999999999999 9999999999999
Q ss_pred chhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCCh
Q 043218 149 GYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPR 203 (226)
Q Consensus 149 t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~ 203 (226)
|+||+.+.+.+..+.. ... . .. +..++|++.+|++++.++|++++.....
T Consensus 161 tlADl~~~~~~~~~~~-~~~-~-~~--~~~~~p~v~~W~~~~~~~P~~~e~~~~~ 210 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG-KFA-T-EK--DFEKYPKVARWYERIQKRPAYEEANEKG 210 (226)
T ss_pred cHHHHHHhhHHHHHhH-hhh-h-hh--hhhhChHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999888742 111 1 11 2589999999999999999987765433
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=5.7e-30 Score=199.01 Aligned_cols=178 Identities=18% Similarity=0.192 Sum_probs=136.6
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLV-HDDKVIVDSFVILEYIDVTWQHDPL 83 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~-~~g~~l~es~~I~~yL~~~~~~~~l 83 (226)
||||+++.||+|++|+++|.++|++|+.+.++..+.... ...||. |+||+|+ ++|.+|+||.+|++||+++||++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~-~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATP-IRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhH-HHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 689999999999999999999999999988865432222 568898 8999995 7899999999999999999987545
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhHHHHHHhcc-------Ch---------------------HhHHHHHHHHHHHHHHHh
Q 043218 84 LPQDPYETAMARFWAKFAYEKLLESAYKAMWS-------KG---------------------EEKQKTMKEAIESLEKIE 135 (226)
Q Consensus 84 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------------~~~~~~~~~~~~~l~~le 135 (226)
.+ .+++.++.|+.+....+...+...+.. .. +..+.....+.+.|+.+|
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 155 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALD 155 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 246677888877655444333222110 00 011355778899999999
Q ss_pred -hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhh
Q 043218 136 -ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIK 197 (226)
Q Consensus 136 -~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~ 197 (226)
+|++ +|++|+++|+||+++++.+.++.. ..+ . +.+|+|.+|++||.++|.+.
T Consensus 156 ~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~---~~~-~-----~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 156 PLIVK-PNAVNGELSTDDIHLFPILRNLTL---VKG-I-----EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHhcC-ccccCCCCCHHHHHHHHHHhccee---ecC-C-----CCCHHHHHHHHHHHHHhCCC
Confidence 9987 999999999999999999988732 212 1 24699999999999999864
No 19
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-28 Score=182.55 Aligned_cols=194 Identities=21% Similarity=0.204 Sum_probs=159.1
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCC
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQH 80 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~ 80 (226)
|+ .+||+|+...+++..+|++++++|++|++..++..+.........|+ |++|+|..||..|.+|.+|++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 66 69999999999999999999999999999999877655555666899 8999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhcc-----ChHhHH-HHHHHHHHHHHHHh-hhc--CCCcccCCCCchh
Q 043218 81 DPLLPQDPYETAMARFWAKFAYEKLLESAYKAMWS-----KGEEKQ-KTMKEAIESLEKIE-ELR--GKNFIGGNSIGYL 151 (226)
Q Consensus 81 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~l~~le-~L~--~~~fl~G~~~t~a 151 (226)
|.++++.+++.++.+.+-..+.....+...+.. ..+..+ ...+...+.+..++ .|. ++.||+||++|+|
T Consensus 78 --l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 --LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred --cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 999999999999999998877444433333321 111112 45667778899999 886 4679999999999
Q ss_pred HHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhh
Q 043218 152 DLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDK 205 (226)
Q Consensus 152 D~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~ 205 (226)
|+.++..+..+... .. .+. .+.+|+|.++.+++.++|++++.+.++..
T Consensus 156 Dl~i~e~l~~l~~~---~~-~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 156 DLVIAEHLDTLEEL---LD-PSA--LDHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred HHHHHHHHHHHHHh---cC-chh--hccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 99999999988432 22 333 46889999999999999999998877653
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=7.7e-28 Score=186.77 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=131.0
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEE-eCCeeeeehHHHHHHHHhhCCCCCCC
Q 043218 6 KLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLV-HDDKVIVDSFVILEYIDVTWQHDPLL 84 (226)
Q Consensus 6 ~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~-~~g~~l~es~~I~~yL~~~~~~~~l~ 84 (226)
|||++..||||++||++|.++|++|+.+.+...+.. ...+.||. |++|+|+ ++|.+|+||.+|++||+++||.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-TPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-hHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 699999999999999999999999998776544322 33688999 8999998 78899999999999999999765443
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHhcc-----------------ChHh-----------HHHHHHHHHHHHHHHh-
Q 043218 85 PQDPYETAMARFWAKFAYEKLLESAYKAMWS-----------------KGEE-----------KQKTMKEAIESLEKIE- 135 (226)
Q Consensus 85 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----------~~~~~~~~~~~l~~le- 135 (226)
+. .+..+..|+.++...+...+...+.. ..+. .++....+.+.|+.+|
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 34556667766555443332211110 0000 1355678889999999
Q ss_pred hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCch-HHHHHHHHhhcChhhh
Q 043218 136 ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFP-AIAEWSTKFLKHPVIK 197 (226)
Q Consensus 136 ~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p-~l~~w~~~i~~~p~~~ 197 (226)
+|++++|++| ++|+||+++++.+.++. ...+ ..+| +|.+|++||++++++.
T Consensus 156 ~L~~~~~l~g-~~TiADi~l~~~l~~~~---~~~~-------~~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 156 LIDGPNAVNG-ELSEDDILVFPLLRNLT---LVAG-------INWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHhCccccCC-CCCHHHHHHHHHhcCee---eecC-------CCCChHHHHHHHHHHHHhCCC
Confidence 9999999965 69999999999988763 2111 1256 9999999999998763
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.92 E-value=1.8e-24 Score=164.87 Aligned_cols=201 Identities=18% Similarity=0.259 Sum_probs=146.2
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC-C
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTW-Q 79 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~-~ 79 (226)
.+.||++|.|..+|+||++++++||+|+...|++. ...+||...||. |.||||++|..+|.++.-||+|++++| +
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 48999999999999999999999999999999987 478999999999 899999999999999999999999999 5
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHH-----h--------------hhhHHHH---HH-----------hcc----------
Q 043218 80 HDPLLPQ-DPYETAMARFWAKFAY-----E--------------KLLESAY---KA-----------MWS---------- 115 (226)
Q Consensus 80 ~~~l~p~-~~~~~~~~~~~~~~~~-----~--------------~~~~~~~---~~-----------~~~---------- 115 (226)
+..|.|. +.....++-......+ + ...|.+. .. ...
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 6667775 2222222222111110 0 0001111 00 000
Q ss_pred --------------ChHhHHHHHHHHHHHHHHHh-hhcC----CCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccC
Q 043218 116 --------------KGEEKQKTMKEAIESLEKIE-ELRG----KNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILD 176 (226)
Q Consensus 116 --------------~~~~~~~~~~~~~~~l~~le-~L~~----~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~ 176 (226)
+.....+....+...|+.+| -|.. ..||+|+.+|+||+.+.+.|.++...... -....
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e---~~yw~ 261 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLE---KKYWE 261 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccH---HHhcc
Confidence 00011334556666777777 7765 57999999999999999999998543221 11112
Q ss_pred CCCchHHHHHHHHhhcChhhhhcCCChhhHHH
Q 043218 177 SQKFPAIAEWSTKFLKHPVIKENLPPRDKTLA 208 (226)
Q Consensus 177 ~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~ 208 (226)
.+..|||..|+.|+.+|++|++++++.-.+--
T Consensus 262 ~gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr 293 (325)
T KOG4420|consen 262 DGSRPNLESYFERVRRRFSFRKVLGDIFNILR 293 (325)
T ss_pred cCCCccHHHHHHHHHhhhHHHHhhhhHHHHHH
Confidence 46899999999999999999999988776554
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.9e-22 Score=149.73 Aligned_cols=193 Identities=20% Similarity=0.264 Sum_probs=160.7
Q ss_pred cCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCCCCHHH
Q 043218 11 WSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHDPLLPQDPYE 90 (226)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~~l~p~~~~~ 90 (226)
..|||||++.+.|+++|++|+.+.|++..+++++..+.|. |++|+|..++..++||..|-++|++.+|.+++.--++.|
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E 97 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPE 97 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHH
Confidence 4699999999999999999999999999999999999998 899999999999999999999999999876553322323
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhccChH-hHHHHHHHHHHHHHHHh-hhcC---CCcccCCCCchhHHHHHHHHhhhhhh
Q 043218 91 TAMARFWAKFAYEKLLESAYKAMWSKGE-EKQKTMKEAIESLEKIE-ELRG---KNFIGGNSIGYLDLAIGWISYWLPVW 165 (226)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le-~L~~---~~fl~G~~~t~aD~~~~~~l~~~~~~ 165 (226)
.+- +...++..+..++....+ ..+.....+...|..|+ +|.. ++||.||++|.||+.+++-|+.++..
T Consensus 98 ~as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va 170 (221)
T KOG1422|consen 98 SAS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVA 170 (221)
T ss_pred HHh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHH
Confidence 222 222356666666544444 44556778888999999 9974 89999999999999999999999887
Q ss_pred HhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHHHHHH
Q 043218 166 EEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAYFHKR 213 (226)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~~~ 213 (226)
.....+.++ .+.++++++|++.+.++..|..+.+...++....+.+
T Consensus 171 ~k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 171 AKHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred HHHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 777666777 7899999999999999999999999998877665543
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.90 E-value=1.8e-22 Score=179.43 Aligned_cols=157 Identities=22% Similarity=0.216 Sum_probs=129.7
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHhhCC
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYIDVTWQ 79 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL~~~~~ 79 (226)
|+ ++||+.+.|+ +.++.++|++.|++|+... .+|. |++|+|++ +|.+|+||.+|++||++.++
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 67 8999999874 7789999999999999864 2578 89999995 78999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHH
Q 043218 80 HDPLLPQDPYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWI 158 (226)
Q Consensus 80 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~ 158 (226)
...|+|.++.+++++++|+.++.... . ...+...++.+| +|++++||+|+++|+||+++++.
T Consensus 65 ~~~L~p~d~~erAqV~qWL~~~~~~~-~----------------~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 65 LPGFYGQDAFESSQVDEWLDYAPTFS-S----------------GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSG 127 (722)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhhcc-c----------------HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHH
Confidence 88899999999999999999875421 0 013567789999 99999999999999999999988
Q ss_pred HhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChh
Q 043218 159 SYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPV 195 (226)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~ 195 (226)
+...... ... ... .+.||+|.+|+++|.++|+
T Consensus 128 L~~~~~~--~~~-~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 128 LAGSGQR--WES-LRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHhhhhh--hhc-ccc--cccCHHHHHHHHHHHhCCC
Confidence 7654111 111 222 4789999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.82 E-value=5.6e-20 Score=119.43 Aligned_cols=74 Identities=41% Similarity=0.591 Sum_probs=70.7
Q ss_pred EecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 043218 7 LLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHD 81 (226)
Q Consensus 7 L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (226)
||+++.||||+|+|++|.++||+|+.+.++..+..+++...||. |++|+|+++|.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999988888999999999 899999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.79 E-value=7.5e-19 Score=113.52 Aligned_cols=73 Identities=37% Similarity=0.430 Sum_probs=69.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~ 78 (226)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||. |++|+|+++|..+.||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999988778899999999 899999999999999999999999875
No 26
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.79 E-value=4.6e-18 Score=130.75 Aligned_cols=176 Identities=18% Similarity=0.161 Sum_probs=127.6
Q ss_pred eEEeccc-------CChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 5 VKLLGFW-------SSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 5 ~~L~~~~-------~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
+-||.++ .||||.++..+|...+|||+.+...+ ...++. |++|.++.+|..+.||..|+.+|.+.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-------~~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-------KRRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-------eeeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 4477766 59999999999999999999765442 133556 89999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHH----------------------------Hh----cc----------
Q 043218 78 WQHDPLLPQDPYETAMARFWAKFAYEKLLESAYK----------------------------AM----WS---------- 115 (226)
Q Consensus 78 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~----~~---------- 115 (226)
++-+..++ +.++++.+.+...++..++-.+.. ++ +.
T Consensus 118 f~~~~~L~--~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~ 195 (281)
T KOG4244|consen 118 FKIPDDLS--AEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA 195 (281)
T ss_pred cCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 96444233 345555555555444333222221 11 00
Q ss_pred -ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhc
Q 043218 116 -KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 116 -~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~ 192 (226)
..-+.++..+.+.+.|+.++ .|++++||+|+++|-+|+.+++.|..+.+ +....-.+++ .+++|||..|++||++
T Consensus 196 IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~l-e~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 196 IGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLL-EGDFPNLLEYCERIRK 272 (281)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHH-hhhchHHHHHHHHHHH
Confidence 11223456778889999999 99999999999999999999999999876 2111102333 4789999999999987
No 27
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.78 E-value=1.1e-18 Score=112.98 Aligned_cols=74 Identities=61% Similarity=0.967 Sum_probs=68.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~ 78 (226)
|+||+++.||+|++++++|+++|++|+.+.++...+.+++.+.||.+|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 68999999999999999999999999999988877788899999942799999999999999999999999874
No 28
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.78 E-value=1.1e-18 Score=112.51 Aligned_cols=70 Identities=27% Similarity=0.489 Sum_probs=65.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++||+++.||+|++|+++|.++|++|+.+.+++. ++.+++.++||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998874 457789999999 899999999999999999999985
No 29
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.77 E-value=1.5e-18 Score=115.26 Aligned_cols=70 Identities=29% Similarity=0.338 Sum_probs=66.3
Q ss_pred cCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC
Q 043218 11 WSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHD 81 (226)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~ 81 (226)
..||||+++|++|+++||+|+.+.+++.+++++|+++||. |++|+|+++|.+|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5799999999999999999999999999989999999999 899999999999999999999999998754
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=2.4e-18 Score=112.32 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=65.8
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEe--CCeeeeehHHHHHHHHhhC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVH--DDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~--~g~~l~es~~I~~yL~~~~ 78 (226)
+++||+++.||+|++|+++|.++|++|+.+.++..+ ..+++.+.||. |++|+|++ +|..+.||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 479999999999999999999999999998886543 45778899999 89999997 3689999999999999875
No 31
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.75 E-value=3.8e-17 Score=116.72 Aligned_cols=123 Identities=44% Similarity=0.840 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHh
Q 043218 89 YETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEE 167 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~ 167 (226)
.+++++++|+.+.+..+.+.+...+...++..+.....+.+.++.+| .|++++|++|+++|+||+++++.+.++.....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 46889999999999888888777665555566678889999999999 99989999999999999999999988754333
Q ss_pred hhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHHHHH
Q 043218 168 ADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAYFHK 212 (226)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~~ 212 (226)
..+ .+.++...+|++.+|+++|+++|+++++.+..+...+++++
T Consensus 82 ~~~-~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 82 VGG-VKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HcC-ccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 323 33222467999999999999999999999998887776654
No 32
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.75 E-value=4.7e-18 Score=109.16 Aligned_cols=69 Identities=33% Similarity=0.453 Sum_probs=64.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHD-DKVIVDSFVILEYI 74 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~-g~~l~es~~I~~yL 74 (226)
++||+++.||||++++++|+++|++|+.+.++...+.+++.+.||. |++|+|+++ |..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 4899999999999999999999999999999988777899999999 899999985 89999999999996
No 33
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.75 E-value=6.6e-18 Score=109.37 Aligned_cols=71 Identities=31% Similarity=0.447 Sum_probs=65.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC---CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN---KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDV 76 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~ 76 (226)
++||+++.||+|++++++|+++|++|+.+.+++.. ..+++.+.||. |++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999998753 46889999999 8999999999999999999999974
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.74 E-value=1.1e-17 Score=108.94 Aligned_cols=72 Identities=33% Similarity=0.450 Sum_probs=66.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
++||+++.||+|++++++|+++|++|+.+.++.. +..+++.+.||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988865 356789999999 89999999999999999999999864
No 35
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.74 E-value=7e-18 Score=108.93 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=66.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
++||+++.|++|+++|++|.++|++|+.+.++..+..+++.+.||. |++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 7999999999999999999999999999999875555678899999 89999999999999999999999763
No 36
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.74 E-value=1.3e-17 Score=111.92 Aligned_cols=73 Identities=33% Similarity=0.467 Sum_probs=67.6
Q ss_pred CCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHH
Q 043218 2 ATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHD-DKVIVDSFVILEYID 75 (226)
Q Consensus 2 ~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~-g~~l~es~~I~~yL~ 75 (226)
+.+++||+++.||+|++++++|.++|++|+.+.++..+..+++.+.||. +++|+|+++ |..++||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 4689999999999999999999999999999999887767778999999 899999986 899999999999985
No 37
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.74 E-value=1.8e-17 Score=107.94 Aligned_cols=73 Identities=30% Similarity=0.422 Sum_probs=66.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC---CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN---KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~ 78 (226)
++||+++.|++|++++++|+++|++|+.+.++..+ ..+++.+.||. |++|+|+++|.+|+||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999998753 35688899999 899999999999999999999999874
No 38
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.72 E-value=2.8e-17 Score=108.36 Aligned_cols=74 Identities=26% Similarity=0.418 Sum_probs=67.2
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeC---CeeeeehHHHHHHHHhh
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHD---DKVIVDSFVILEYIDVT 77 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~---g~~l~es~~I~~yL~~~ 77 (226)
+++||+++. |+|++++++|.++|++|+.+.+++. ...+++.+.||. |++|+|+++ |..|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 479999985 9999999999999999999999864 456889999999 899999987 88999999999999999
Q ss_pred CC
Q 043218 78 WQ 79 (226)
Q Consensus 78 ~~ 79 (226)
++
T Consensus 79 ~~ 80 (81)
T cd03048 79 YD 80 (81)
T ss_pred hC
Confidence 86
No 39
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.8e-16 Score=114.77 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=126.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHhhCCCCCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYIDVTWQHDPL 83 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL~~~~~~~~l 83 (226)
|+||-+.+||||-|+|+++.++|||++...+..++......-++. ++||+|+- +|+.+.||..|++|+++..+++-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcc--cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 689999999999999999999999999988877654444334444 58999995 789999999999999999986645
Q ss_pred CCC-CHHHHHHHHHHHHHHHhhhhHHHHH-------------HhccChHh-----------HHHHHHHHHHHHHHHh-hh
Q 043218 84 LPQ-DPYETAMARFWAKFAYEKLLESAYK-------------AMWSKGEE-----------KQKTMKEAIESLEKIE-EL 137 (226)
Q Consensus 84 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-----------~~~~~~~~~~~l~~le-~L 137 (226)
... .+...+..+..-.+.+..+.|.+.. +|...++. ......++...++.++ .+
T Consensus 79 t~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li 158 (215)
T COG2999 79 TGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDKLI 158 (215)
T ss_pred ccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 443 3444444444444444444444443 22222221 2455788888999999 76
Q ss_pred cCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhh
Q 043218 138 RGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVI 196 (226)
Q Consensus 138 ~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~ 196 (226)
.+..=+-| .++.-|+.+|+.|.++ .-..+ ..+ -.++..|..+|.+...+
T Consensus 159 ~~~s~~n~-~l~~ddi~vFplLRnl---t~v~g-i~w-----ps~v~dy~~~msektqV 207 (215)
T COG2999 159 VGPSAVNG-ELSEDDILVFPLLRNL---TLVAG-IQW-----PSRVADYRDNMSEKTQV 207 (215)
T ss_pred cCcchhcc-ccchhhhhhhHHhccc---eeccc-CCC-----cHHHHHHHHHHHHhhCc
Confidence 65443344 5999999999999987 23322 222 34999999999875543
No 40
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=122.76 Aligned_cols=180 Identities=18% Similarity=0.290 Sum_probs=122.9
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCC--
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHD-- 81 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~-- 81 (226)
+++||.+-.||||-+||.+|.++||+|+.+.|++..+.+ .+-+.. ++||+|...|..+.||.+||.-|..-..++
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--cccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 688999999999999999999999999999998763221 122334 799999997878999999999884432110
Q ss_pred ------CCCC------------------------C-C----HHHHHHHHHHHHHHHhhhhHHHHHHhcc-----------
Q 043218 82 ------PLLP------------------------Q-D----PYETAMARFWAKFAYEKLLESAYKAMWS----------- 115 (226)
Q Consensus 82 ------~l~p------------------------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 115 (226)
..+| + + -..+...+.|..|++..+.-.+..-.++
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 1122 0 0 1122234456666555433222211110
Q ss_pred -----------------------------------ChHhHHHHHHHHHHHHHHHh-hhc-CCCcccCCCCchhHHHHHHH
Q 043218 116 -----------------------------------KGEEKQKTMKEAIESLEKIE-ELR-GKNFIGGNSIGYLDLAIGWI 158 (226)
Q Consensus 116 -----------------------------------~~~~~~~~~~~~~~~l~~le-~L~-~~~fl~G~~~t~aD~~~~~~ 158 (226)
.+-+....++.+.++++.+- .|+ +++||.|++|++||+.+++.
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 00011235677777888887 774 58999999999999999999
Q ss_pred HhhhhhhHhhhccccccCCCCchHHHHHHHHhhc
Q 043218 159 SYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~ 192 (226)
+..+.+...+ -++ -...++..|+-+|++
T Consensus 327 l~sm~gc~af---kd~---~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 327 LRSMEGCQAF---KDC---LQNTSIGEWYYRMEA 354 (370)
T ss_pred hhHhhhhhHH---HHH---HhcchHHHHHHHHHH
Confidence 9998665554 222 346899999999976
No 41
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.72 E-value=3.2e-17 Score=105.75 Aligned_cols=70 Identities=39% Similarity=0.614 Sum_probs=64.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++||+++.||+|++++++|.++|++|+.+.++.. +..+++.+.||. |++|+|+++|..+.||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 356888999999 899999999999999999999984
No 42
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.71 E-value=3.7e-17 Score=106.10 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=65.2
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceEEEcCCC--CCchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHh
Q 043218 6 KLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF--NKSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYIDV 76 (226)
Q Consensus 6 ~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL~~ 76 (226)
|||+++.||+|++++++|+++|++|+.+.++.. ++.+++.++||. |++|+|++ +|.+|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999876 467889999999 89999997 58999999999999986
No 43
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.71 E-value=3e-17 Score=105.38 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=61.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHD-DKVIVDSFVILEYIDV 76 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~-g~~l~es~~I~~yL~~ 76 (226)
|+||+++.||||+++|++|.++|++|+.+.++..... ...+.+|. +++|+|+++ |..+.||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA-TPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH-HHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 6899999999999999999999999999888754322 34567898 899999986 8999999999999974
No 44
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.71 E-value=2.5e-17 Score=106.10 Aligned_cols=71 Identities=27% Similarity=0.252 Sum_probs=63.8
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDV 76 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~ 76 (226)
++||+++.|++|+++|++|+++|++|+.+.++..+ ....+.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988653 23447889999 8999999999999999999999974
No 45
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=4.7e-17 Score=105.08 Aligned_cols=70 Identities=37% Similarity=0.463 Sum_probs=64.9
Q ss_pred eEEecccCChhHHHHHHHHHH--cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKL--KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL~ 75 (226)
++||+++.||+|++++++|.+ +|++|+.+.++...+.+++.+.||. |++|+|++ +|..+.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778899999999 89999985 7899999999999985
No 46
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.5e-17 Score=125.34 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=144.1
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCC--ceEEEcCCC--CCchhh----------------------hhcCCCC---Cc
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVE--FENIEEDIF--NKSTRL----------------------LELNPVH---KK 53 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~--~~~~~v~~~--~~~~~~----------------------~~~~p~~---~~ 53 (226)
+.+.||..-.||+++|..++-+++|++ .....|++. +..-.| ....|.| -+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 478999999999999999999999996 233334332 111111 1112211 27
Q ss_pred ccEEEeC--Cee-eeehHHHHHHHHhhCC-----CCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHH-hccChHhHHHHH
Q 043218 54 VPVLVHD--DKV-IVDSFVILEYIDVTWQ-----HDPLLPQDPYETAMARFWAKFAYEKLLESAYKA-MWSKGEEKQKTM 124 (226)
Q Consensus 54 ~P~L~~~--g~~-l~es~~I~~yL~~~~~-----~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 124 (226)
||||-+. .++ -.||..|++-+...|. ...|+|.. .+.+++.+.+++.+.+..-+.+. |-...+..++..
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 9999984 344 4599999999987664 24577753 47777777777665554444433 334677788889
Q ss_pred HHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhh-HhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCC
Q 043218 125 KEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVW-EEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPP 202 (226)
Q Consensus 125 ~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~ 202 (226)
..+-..|+.+| .|++++||+|+++|-||+-+++.|-+++-. -.+.. +++-....||||..|.+.+-+.|.++.+..-
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFK-CN~~rI~dypnL~~yLr~LYq~pg~~~T~df 286 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFK-CNLRRIRDYPNLWGYLRDLYQLPGFAETVDF 286 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeee-cccchhhcCchHHHHHHHHhcCcccccccch
Confidence 99999999999 999999999999999999999999888511 11223 3332335699999999999999999998754
Q ss_pred hhhHHH
Q 043218 203 RDKTLA 208 (226)
Q Consensus 203 ~~~~~~ 208 (226)
.....+
T Consensus 287 ~hIK~h 292 (324)
T COG0435 287 DHIKLH 292 (324)
T ss_pred hHhhhh
Confidence 443333
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.70 E-value=5.8e-17 Score=104.79 Aligned_cols=70 Identities=33% Similarity=0.455 Sum_probs=63.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL~ 75 (226)
++||+++.||+|++++++|.++|++|+.+.++.. ...+++.+.||. |++|+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998865 246788999999 89999995 7789999999999985
No 48
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.70 E-value=8.1e-17 Score=103.95 Aligned_cols=70 Identities=33% Similarity=0.507 Sum_probs=63.9
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++||+++.||++++++++|+++|++|+.+.++.. ...+++.++||. |++|+|+++|.+|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 346788999999 899999999999999999999984
No 49
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.69 E-value=1.4e-16 Score=103.62 Aligned_cols=73 Identities=30% Similarity=0.512 Sum_probs=66.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQ 79 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~ 79 (226)
++||+++. +++++++++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999886 6899999999999999999999874 467889999999 8999999999999999999999999875
No 50
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.69 E-value=1.3e-16 Score=102.91 Aligned_cols=70 Identities=36% Similarity=0.615 Sum_probs=64.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
|+||+++.|++|++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999874 356788999999 899999999999999999999985
No 51
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.69 E-value=1.7e-16 Score=103.54 Aligned_cols=73 Identities=30% Similarity=0.375 Sum_probs=65.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC---CchhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHhhCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN---KSTRLLELNPVHKKVPVLVHD-DKVIVDSFVILEYIDVTWQ 79 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~~P~L~~~-g~~l~es~~I~~yL~~~~~ 79 (226)
++||+++.| .+++++++|.++|++|+.+.++..+ ..+++.+.||. |++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999976 5899999999999999999888753 47889999999 899999986 8999999999999999875
No 52
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.68 E-value=2e-16 Score=102.65 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=61.2
Q ss_pred ceEEeccc-------CChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 043218 4 KVKLLGFW-------SSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDV 76 (226)
Q Consensus 4 ~~~L~~~~-------~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~ 76 (226)
+++||+++ .||+|++|+++|.++|++|+...++. .+.+|. |++|+|+++|.++.||.+|++||++
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHH
Confidence 36899998 68999999999999999999887764 267898 8999999999999999999999999
Q ss_pred hCC
Q 043218 77 TWQ 79 (226)
Q Consensus 77 ~~~ 79 (226)
+|+
T Consensus 73 ~~~ 75 (75)
T cd03080 73 KYG 75 (75)
T ss_pred HcC
Confidence 874
No 53
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.68 E-value=1.7e-16 Score=103.58 Aligned_cols=72 Identities=25% Similarity=0.415 Sum_probs=62.4
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeC----CeeeeehHHHHHHHHhhC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHD----DKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~----g~~l~es~~I~~yL~~~~ 78 (226)
+++||+++.||||++++++|.++|++|+.+.++..... + ...+|. +++|+|+++ |.+|.||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~-~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRK-E-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHH-H-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 58999999999999999999999999999988754322 3 356898 899999965 789999999999999875
No 54
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.67 E-value=1.2e-15 Score=111.24 Aligned_cols=124 Identities=13% Similarity=0.239 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhc-cChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhH-
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMW-SKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWE- 166 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~- 166 (226)
.++.+++|+++..+.+.+.+..... .+++..+.....+.+.|+.+| .|++++|++|+++|+||+++++.+.++....
T Consensus 4 ~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~ 83 (142)
T cd03190 4 LRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYV 83 (142)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhh
Confidence 4778999999999988888776543 455666778889999999999 9999999999999999999999887653211
Q ss_pred hhhc-cccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHHHHHHHH
Q 043218 167 EADG-SMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAYFHKRAE 215 (226)
Q Consensus 167 ~~~~-~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (226)
.... +... .+.||+|.+|+++|.++|+++++........++++.+++
T Consensus 84 ~~~~~~~~~--~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 84 QHFKCNLKR--IRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhcccccch--hhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 1101 0111 358999999999999999999999988888888888765
No 55
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.66 E-value=1.7e-15 Score=108.01 Aligned_cols=118 Identities=20% Similarity=0.330 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcC--CCcccCCCCchhHHHHHHHHhhhhhhH
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRG--KNFIGGNSIGYLDLAIGWISYWLPVWE 166 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~--~~fl~G~~~t~aD~~~~~~l~~~~~~~ 166 (226)
++++.+.|+++++ .+.+.+...+.. ++..++..+.+.+.++.+| .|++ ++|++|+++|+||+++++.+.++....
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~ 79 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALK 79 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHH
Confidence 4889999999997 466666666665 6667788899999999999 9985 899999999999999999888775433
Q ss_pred hhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHHHH
Q 043218 167 EADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAYFH 211 (226)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~ 211 (226)
...+ ... ..+.+|+|++|+++|.++|+++.++.+.+...++++
T Consensus 80 ~~~~-~~~-~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 80 LLLG-YEF-PLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred hhcc-ccC-CcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 2211 111 247899999999999999999999999988888775
No 56
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.66 E-value=3.5e-16 Score=100.02 Aligned_cols=65 Identities=43% Similarity=0.566 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHcCCCceEEEcCC----CCCchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHHHhh
Q 043218 12 SSPPVFRVVWALKLKGVEFENIEEDI----FNKSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL~~~ 77 (226)
+||||+|++++|+++|++|+...+.. .+..+++.+.||. |++|+|++ +|+++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 2455889999999 89999998 789999999999999874
No 57
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.66 E-value=5.7e-16 Score=101.46 Aligned_cols=72 Identities=28% Similarity=0.333 Sum_probs=61.9
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhc-----CCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLEL-----NPVHKKVPVLVHDDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~-----~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~ 78 (226)
+++||+++.|+.|++++++|+++|++|+.+.++..+ ++.+. .|. |++|+|++||.+|+||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~---~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE---DLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH---HHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 478999999999999999999999999999887532 22222 357 899999999999999999999999998
Q ss_pred C
Q 043218 79 Q 79 (226)
Q Consensus 79 ~ 79 (226)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 58
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.66 E-value=2.2e-15 Score=104.49 Aligned_cols=104 Identities=15% Similarity=0.213 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHh
Q 043218 89 YETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEE 167 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~ 167 (226)
.++++++.|+.+++..+.+.+...+...++..+.....+.+.+..+| .|++++|++|+++|+||+++++.+.+..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~---- 77 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLP---- 77 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHH----
Confidence 57899999999999988888776665445566778889999999999 9999999999999999999999875542
Q ss_pred hhccccccCCCCchHHHHHHHHhhcChhhhhc
Q 043218 168 ADGSMRILDSQKFPAIAEWSTKFLKHPVIKEN 199 (226)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~ 199 (226)
..+ .++ ...+|+|.+|+++|.++|+++++
T Consensus 78 ~~~-~~~--~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 78 ALG-IEL--PKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HcC-CCC--cccchHHHHHHHHHHCCHHHHHh
Confidence 223 443 35799999999999999999875
No 59
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.65 E-value=5.9e-16 Score=102.06 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=62.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC----Cchhhhh-c----CCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN----KSTRLLE-L----NPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~-~----~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
.+||++..++.|++++++|+++|++|+.+.+++.. +.+++.. . +|+ |++|+|++||.+|+||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 47999999999999999999999999999998753 1233332 2 298 899999999999999999999999
Q ss_pred hhC
Q 043218 76 VTW 78 (226)
Q Consensus 76 ~~~ 78 (226)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 864
No 60
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.64 E-value=3.5e-15 Score=104.91 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhcc---ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhh
Q 043218 87 DPYETAMARFWAKFAYEKLLESAYKAMWS---KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWL 162 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~ 162 (226)
++..++.+++|+.+....+.+.+....+. .++..+.....+.+.++.+| +|++++|++|+++|+||+++++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~ 82 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQF 82 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHH
Confidence 67899999999999999999888875553 22346677889999999999 999999999999999999999887665
Q ss_pred hhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhc
Q 043218 163 PVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKEN 199 (226)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~ 199 (226)
... .. ..+...++|+|.+|++++.++|+++++
T Consensus 83 ~~~-~~----~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 83 AHV-DP----KWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHh-hh----cccCcccCHHHHHHHHHHHcChHHHhh
Confidence 321 11 111237899999999999999999875
No 61
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.63 E-value=1.4e-15 Score=100.81 Aligned_cols=67 Identities=31% Similarity=0.492 Sum_probs=58.8
Q ss_pred cCChhHHHHHHHHHHcCCCceEEEcCCCCCc---hhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHhhCC
Q 043218 11 WSSPPVFRVVWALKLKGVEFENIEEDIFNKS---TRLLELNPVHKKVPVLVHD-DKVIVDSFVILEYIDVTWQ 79 (226)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~---~~~~~~~p~~~~~P~L~~~-g~~l~es~~I~~yL~~~~~ 79 (226)
++||+|+++|++|.++|++|+.+.++..+.. .++ +.||. |++|+|+++ |.++.||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6799999999999999999999988865332 334 78999 899999998 8999999999999999875
No 62
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.60 E-value=4.9e-15 Score=94.19 Aligned_cols=70 Identities=40% Similarity=0.587 Sum_probs=63.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCch-hhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKST-RLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++||+++.||+|++++++|.++|++|+.+.++..+... ++.+.+|. +++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998764333 47788998 799999999999999999999984
No 63
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.60 E-value=4.3e-15 Score=95.78 Aligned_cols=67 Identities=36% Similarity=0.475 Sum_probs=60.5
Q ss_pred ecccCChhHHHHHHHHHHcCCCceEEEcCCCC--CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 8 LGFWSSPPVFRVVWALKLKGVEFENIEEDIFN--KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 8 ~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
-+...||+|++++++|+++|++|+.+.++..+ ..+++.++||. |++|+|+++|.++.||.+|++||.
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 35678999999999999999999999998753 46889999999 899999999999999999999984
No 64
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.59 E-value=6.2e-15 Score=95.77 Aligned_cols=72 Identities=32% Similarity=0.447 Sum_probs=59.4
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCC---CCchhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF---NKSTRLLELNPVHKKVPVLVHD-DKVIVDSFVILEYIDV 76 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~~P~L~~~-g~~l~es~~I~~yL~~ 76 (226)
|+|++++.++++.++|++|+++|++|+.+.+++. ++.+++.+.||..|++|+|+++ |.+|+||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3455555555999999999999999999999974 3458999999973599999998 9999999999999985
No 65
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.4e-15 Score=112.98 Aligned_cols=194 Identities=19% Similarity=0.253 Sum_probs=137.7
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCC--ceEEEcCC-CC-Cchhhhh------------------------------cC
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVE--FENIEEDI-FN-KSTRLLE------------------------------LN 48 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~--~~~~~v~~-~~-~~~~~~~------------------------------~~ 48 (226)
+.+.||..-.||+++|+.+.++++|++ .-...+.+ .+ +...|.. .+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 468899999999999999999999996 22333333 11 1111111 12
Q ss_pred C----CCCcccEEEeCC---eeeeehHHHHHHHHhh---C------CCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHH-
Q 043218 49 P----VHKKVPVLVHDD---KVIVDSFVILEYIDVT---W------QHDPLLPQDPYETAMARFWAKFAYEKLLESAYK- 111 (226)
Q Consensus 49 p----~~~~~P~L~~~g---~~l~es~~I~~yL~~~---~------~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~- 111 (226)
| .+ +||||=|-. .+-.||..|++.+... + +.-.|+|.+ .+++++.+-.|+.+.+..-+.+
T Consensus 116 p~Y~grf-TVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~ 192 (319)
T KOG2903|consen 116 PNYTGRF-TVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKC 192 (319)
T ss_pred CCCCceE-EEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeee
Confidence 2 21 799998842 3456999999999932 2 234577753 4777888877776655544433
Q ss_pred HhccChHhHHHHHHHHHHHHHHHh-hhcCCC--cccCCCCchhHHHHHHHHhhhhhh-Hhhhcccc--ccCCCCchHHHH
Q 043218 112 AMWSKGEEKQKTMKEAIESLEKIE-ELRGKN--FIGGNSIGYLDLAIGWISYWLPVW-EEADGSMR--ILDSQKFPAIAE 185 (226)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~le-~L~~~~--fl~G~~~t~aD~~~~~~l~~~~~~-~~~~~~~~--~~~~~~~p~l~~ 185 (226)
.|....+..+...+++-..|+.+| .|+++. |++|+++|-||+.+++.+.+++.. ..... +. .+ .++||+|..
T Consensus 193 GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFK-Cn~~~i-r~~Yp~l~~ 270 (319)
T KOG2903|consen 193 GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFK-CNKKTI-RDEYPNLHN 270 (319)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeee-cchhhh-hccCcHHHH
Confidence 233467777888899999999999 999977 999999999999999999888521 11222 22 23 468999999
Q ss_pred HHHHhhc-ChhhhhcCC
Q 043218 186 WSTKFLK-HPVIKENLP 201 (226)
Q Consensus 186 w~~~i~~-~p~~~~~~~ 201 (226)
|.+++-. .|+++.+..
T Consensus 271 ~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 271 WLKNIYWNIPGFSSTTD 287 (319)
T ss_pred HHHHHHhhccchhhccc
Confidence 9999999 999998764
No 66
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.57 E-value=2e-14 Score=100.66 Aligned_cols=103 Identities=18% Similarity=0.332 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhccC---------hHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHH
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMWSK---------GEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWIS 159 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l 159 (226)
+++.+++|+.+..+.+.+.+...+... ++..+.....+.+.++.+| .|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478899999999888888776544331 2234566788999999999 999899999999999999999988
Q ss_pred hhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcC
Q 043218 160 YWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENL 200 (226)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~ 200 (226)
.++.. .+ .. .+++|+|.+|+++|.++|++++++
T Consensus 82 ~~~~~----~~-~~---~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPG----VG-LD---LSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhh----cC-CC---hhhChHHHHHHHHHHhCHHhHhhC
Confidence 77632 12 22 357999999999999999998753
No 67
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.57 E-value=7e-14 Score=99.86 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=83.9
Q ss_pred HHhhhhHHHHHHhcc-ChHhHHHHHHHHHHHHHHHh-hhcC----------------CCcccCCCCchhHHHHHHHHhhh
Q 043218 101 AYEKLLESAYKAMWS-KGEEKQKTMKEAIESLEKIE-ELRG----------------KNFIGGNSIGYLDLAIGWISYWL 162 (226)
Q Consensus 101 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le-~L~~----------------~~fl~G~~~t~aD~~~~~~l~~~ 162 (226)
....+++.+..++.. +.+..+...+.+...|+.|| +|++ ++|++|+++|+||+.+++.+.++
T Consensus 7 ~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~ 86 (134)
T cd03198 7 AGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV 86 (134)
T ss_pred hHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344578888777765 34556777899999999999 9986 67999999999999999998877
Q ss_pred hhhHh-hhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHH
Q 043218 163 PVWEE-ADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAY 209 (226)
Q Consensus 163 ~~~~~-~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~ 209 (226)
..... ..+ ..+ .+.+|+|.+|++||.+||+++++.....+++..
T Consensus 87 ~~~~~~~~g-~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~ 131 (134)
T cd03198 87 KVVAKKYRN-FEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELA 131 (134)
T ss_pred HHHHHhhcC-CCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHH
Confidence 43211 113 444 478999999999999999999999888776654
No 68
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.56 E-value=1.8e-14 Score=92.66 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=57.7
Q ss_pred eEEeccc-------CChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 5 VKLLGFW-------SSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 5 ~~L~~~~-------~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
+.||.++ .||+|++++++|.++|++|+.+.++... .+|. |++|+|+++|..+.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3577777 8999999999999999999999887532 6898 89999999999999999999999874
No 69
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.55 E-value=1.1e-13 Score=98.01 Aligned_cols=104 Identities=16% Similarity=0.296 Sum_probs=79.2
Q ss_pred hhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcC-CCcccCCCCchhHHHHHHHHhhhhhhHhh-hccccccCCCC
Q 043218 103 EKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRG-KNFIGGNSIGYLDLAIGWISYWLPVWEEA-DGSMRILDSQK 179 (226)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~-~~fl~G~~~t~aD~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 179 (226)
..+++.+...+....+. ++....+.+.+..+| .|++ ++|++|+++|+||+++++.+.++...... .+ ..+ .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~-~~~--~~~ 87 (121)
T cd03201 12 SKIFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKN-WSV--PES 87 (121)
T ss_pred HHHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcC-CCC--ccc
Confidence 34666666666554433 556678999999999 9985 89999999999999999988777532121 12 322 478
Q ss_pred chHHHHHHHHhhcChhhhhcCCChhhHHHHH
Q 043218 180 FPAIAEWSTKFLKHPVIKENLPPRDKTLAYF 210 (226)
Q Consensus 180 ~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~ 210 (226)
+|+|.+|+++|.+||+++++++..+++.+..
T Consensus 88 ~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~ 118 (121)
T cd03201 88 LTSVKSYMKALFSRESFVKTKAEKEDVIAGW 118 (121)
T ss_pred chHHHHHHHHHHCCchhhhcCCCHHHHHHHh
Confidence 9999999999999999999998877765543
No 70
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.54 E-value=1.2e-13 Score=97.62 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHh-c---cC-----------hHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCC
Q 043218 85 PQDPYETAMARFWAKFAYEKLLESAYKAM-W---SK-----------GEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSI 148 (226)
Q Consensus 85 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-----------~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~ 148 (226)
|.++.+++++++|+.+.+..+.+.+...+ . .. .+..+.....+.+.++.+| +|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 46788999999999999888887765322 1 11 1222345668899999999 9999999999999
Q ss_pred chhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcCh
Q 043218 149 GYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHP 194 (226)
Q Consensus 149 t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p 194 (226)
|+||+++++.+.+... . + . . .+.+|+|.+|+++++++|
T Consensus 82 t~ADi~l~~~~~~~~~---~-~-~-~--~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALA---R-G-P-L--LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHH---c-C-c-c--cccCchHHHHHHHHhcCC
Confidence 9999999988877632 1 2 2 1 478999999999999987
No 71
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.53 E-value=1e-13 Score=98.29 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhccC--hHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhH
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMWSK--GEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWE 166 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~ 166 (226)
++++++++++.+.+ +...+..+++.. .+..+.....+.+.++.+| +|++++|++|+++|+||+++++.+.++..
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~-- 78 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRI-- 78 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHH--
Confidence 46788888888777 556666655532 2334556778889999999 99989999999999999999998888742
Q ss_pred hhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhh
Q 043218 167 EADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDK 205 (226)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~ 205 (226)
. . ... .+.||+|.+|++|+.++|+++++++++..
T Consensus 79 -~-~-~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 79 -F-E-PDC--LDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred -h-C-ccc--cccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 1 2 222 36899999999999999999999877654
No 72
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.53 E-value=3.1e-13 Score=95.72 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhc---CCCcccCCCCchhHHHHHHHHhhh
Q 043218 87 DPYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELR---GKNFIGGNSIGYLDLAIGWISYWL 162 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~---~~~fl~G~~~t~aD~~~~~~l~~~ 162 (226)
|+.+|+++++++.+... +...+...+..+.. ...+.+.++.+| .|+ +++|++| ++|+||+++++.+.++
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~ 73 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKGDP-----SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERF 73 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHH
Confidence 46789999999988333 33333232222221 224466778888 776 4899999 9999999999998776
Q ss_pred hhh-HhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhhHHHHH
Q 043218 163 PVW-EEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDKTLAYF 210 (226)
Q Consensus 163 ~~~-~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~ 210 (226)
... ....+ .++ .+++|+|.+|+++|.++|+++++.++.+...+..
T Consensus 74 ~~~~~~~~~-~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 74 QIFLSELFN-YDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHhcC-ccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 432 22334 554 4689999999999999999999999888777654
No 73
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.53 E-value=2.4e-13 Score=95.71 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHhcc-------------ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhH
Q 043218 87 DPYETAMARFWAKFAYEKLLESAYKAMWS-------------KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLD 152 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD 152 (226)
|+.+++.+++|+.+++..+.+.+...+.. ..+..++...++.+.|+.+| .|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999888888776654421 13335667888999999999 99988999999999999
Q ss_pred HHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhh
Q 043218 153 LAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVI 196 (226)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~ 196 (226)
+++++.+.+... .+ .++ ...+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~----~~-~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKV----VK-LRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHh----cC-CCC--ccccHHHHHHHHHHHhccCC
Confidence 999999987632 23 443 46899999999999999974
No 74
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.52 E-value=1e-13 Score=97.60 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH----hc-------cChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHH
Q 043218 90 ETAMARFWAKFAYEKLLESAYKA----MW-------SKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGW 157 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~ 157 (226)
+++++.+|+.+....+.+.+... .+ ...+..+.....+.+.++.+| +|++++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 46778888888776666654432 11 123344566788999999999 9999999999999999999999
Q ss_pred HHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcC
Q 043218 158 ISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENL 200 (226)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~ 200 (226)
.+.+... ... ... .+.+|+|++|.+++.++|++++++
T Consensus 82 ~~~~~~~---~~~-~~~--~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMA---TPF-AKL--FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHH---ccc-hhh--hhcCchHHHHHHHHHhCHHHHhhC
Confidence 8877632 111 111 367999999999999999998753
No 75
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.50 E-value=1.4e-13 Score=97.19 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhc----cChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhh
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMW----SKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPV 164 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~ 164 (226)
+++++.+|+.+....+.+.+...+. ..++..+.....+.+.++.+| .|++++|++|+++|+||+++++.+.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 4788899998887767766554432 233455677889999999999 99988999999999999999999988742
Q ss_pred hHhhhccccccCCCCchHHHHHHHHhhcChhhhhcC
Q 043218 165 WEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENL 200 (226)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~ 200 (226)
..+ .+ ...+|+|.+|+++|+++|++++..
T Consensus 82 ---~~~-~~---~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 ---LLP-LD---LSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred ---hcC-CC---hhhCchHHHHHHHHHcccchHHHH
Confidence 113 22 357999999999999999999853
No 76
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.50 E-value=1.3e-13 Score=97.71 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH----hcc--C--hH-hHHHHHHHHHHHHHHHh-hhc--CCCcccCCCCchhHHHHH
Q 043218 89 YETAMARFWAKFAYEKLLESAYKA----MWS--K--GE-EKQKTMKEAIESLEKIE-ELR--GKNFIGGNSIGYLDLAIG 156 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~--~~-~~~~~~~~~~~~l~~le-~L~--~~~fl~G~~~t~aD~~~~ 156 (226)
.+++.+++|+.++++.+.+.+... ... . ++ ..+.....+.+.|+.+| .|+ .++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 468899999999987776542211 111 1 12 22334567889999999 997 457999999999999999
Q ss_pred HHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCC
Q 043218 157 WISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPP 202 (226)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~ 202 (226)
+.+.+... . + .+ ...+|+|.+|++++.++|+++++.+.
T Consensus 82 ~~~~~~~~---~-~-~~---~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 82 PQVYNARR---F-G-VD---LSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHH---h-C-CC---cccCcHHHHHHHHHHhChhHHHhCcC
Confidence 98876532 1 3 33 36899999999999999999998764
No 77
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.49 E-value=4e-13 Score=97.29 Aligned_cols=108 Identities=21% Similarity=0.304 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHH-----HHHHHHHHHHHh-hhc--CCCcccCCCCchhHHHHHHHHhh
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKT-----MKEAIESLEKIE-ELR--GKNFIGGNSIGYLDLAIGWISYW 161 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~le-~L~--~~~fl~G~~~t~aD~~~~~~l~~ 161 (226)
+.+.++++++.+.+ +...+...++...+..++. ...+.+.++.|| .|+ +++|++|+++|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTAD-LMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence 57788888888877 4455555555444333222 335568999999 998 67899999999999999999988
Q ss_pred hhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChhh
Q 043218 162 LPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRDK 205 (226)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~~ 205 (226)
+.. . . ... ...||+|.+|++++.++|+++++++++..
T Consensus 82 ~~~---~-~-~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~~ 118 (137)
T cd03208 82 VEE---L-D-PSL--LSDFPLLQAFKTRISNLPTIKKFLQPGSP 118 (137)
T ss_pred HHH---h-c-hhh--hccChHHHHHHHHHHcCHHHHHHHhcCCC
Confidence 732 1 1 122 36899999999999999999998876553
No 78
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.48 E-value=3.4e-13 Score=95.75 Aligned_cols=109 Identities=16% Similarity=0.271 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcc-------ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhh
Q 043218 91 TAMARFWAKFAYEKLLESAYKAMWS-------KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWL 162 (226)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~ 162 (226)
++.+++|+.+.+..+.+.+...+.. +....+.....+.+.++.+| .|++++|++|+++|+||+++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~ 81 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLG 81 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHH
Confidence 6788999999888888776544331 23445667888999999999 999999999999999999999988876
Q ss_pred hhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChh
Q 043218 163 PVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRD 204 (226)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~ 204 (226)
... ..+ ... .+.+|++.+|.+++.++|++++++.+.+
T Consensus 82 ~~~--~~~-~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 82 FTY--VFD-KEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHH--HcC-HHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 321 111 111 3579999999999999999999887654
No 79
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.47 E-value=1.6e-13 Score=95.99 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhc----c---ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhh
Q 043218 91 TAMARFWAKFAYEKLLESAYKAMW----S---KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWL 162 (226)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~ 162 (226)
++++++|+.+.+..+.+.+...+. . .++..+.....+.+.++.+| .|++++|++|+++|+||+++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~ 81 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRL 81 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHH
Confidence 678889999887777766543311 1 23345667888999999999 999999999999999999999988776
Q ss_pred hhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcC
Q 043218 163 PVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENL 200 (226)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~ 200 (226)
... + ... ...+|+|.+|.+++.++|++++++
T Consensus 82 ~~~----~-~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 82 EWI----G-IDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred Hhc----c-ccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 322 2 222 467999999999999999999864
No 80
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.47 E-value=6.9e-13 Score=94.74 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhccC-hHhHHHHHHHHHHHHHHHh-hhcC---CCcccCCCCchhHHHHHHHHhhhhh
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMWSK-GEEKQKTMKEAIESLEKIE-ELRG---KNFIGGNSIGYLDLAIGWISYWLPV 164 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le-~L~~---~~fl~G~~~t~aD~~~~~~l~~~~~ 164 (226)
+.+.++.+++.+.+ +...+...++.. .+..+.....+.+.+..+| .|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVED-LRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 57788888887766 566666655543 3344566777889999999 9974 5899999999999999998887742
Q ss_pred hHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCCChh
Q 043218 165 WEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLPPRD 204 (226)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~~~~ 204 (226)
. . ... .+.+|+|.+|++||.++|++++++..+.
T Consensus 82 ---~-~-~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 82 ---L-A-PGC--LDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred ---h-C-hHh--hhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 1 1 112 4689999999999999999999876654
No 81
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=8.1e-13 Score=91.81 Aligned_cols=99 Identities=16% Similarity=0.394 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhc----c-----ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHH
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMW----S-----KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWIS 159 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l 159 (226)
+++++++|+.+..+.+.+.+...+. . .....+.....+.+.++.+| .|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4778899999988888887655422 1 12334567788999999999 999999999999999999999887
Q ss_pred hhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhh
Q 043218 160 YWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVI 196 (226)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~ 196 (226)
.... .. + .. ..++|+|.+|++++.++|++
T Consensus 82 ~~~~---~~-~-~~---~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWF---EL-P-IE---RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHH---Hc-c-cc---cccCchHHHHHHHHHhCCCC
Confidence 5431 11 2 21 47899999999999999975
No 82
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.44 E-value=2.9e-13 Score=93.17 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhh
Q 043218 119 EKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIK 197 (226)
Q Consensus 119 ~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~ 197 (226)
..+.....+.+.++.+| +|++++|++|+++|+||+++++.+.+.. .. + . ...+|+|++|+++++++|+++
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~---~~-~---~--~~~~p~l~~w~~~~~~~p~~~ 97 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGL---QF-G---L--LPERPAFDAYIARITDRPAFQ 97 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHH---Hc-C---C--CCCChHHHHHHHHHHcCHHHH
Confidence 45566788999999999 9999999999999999999999988873 22 2 1 367999999999999999999
Q ss_pred hcCC
Q 043218 198 ENLP 201 (226)
Q Consensus 198 ~~~~ 201 (226)
++..
T Consensus 98 ~~~~ 101 (103)
T cd03207 98 RAAA 101 (103)
T ss_pred HHhc
Confidence 8764
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.44 E-value=9.3e-13 Score=89.40 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=74.2
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCc
Q 043218 71 LEYIDVTWQHDPLLPQDPYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIG 149 (226)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t 149 (226)
++||.+..+ ++|+++.+.+.++.|++.....+.. .....+.+.++.+| +|++++|++|+++|
T Consensus 1 ~r~~~~~~~---~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~t 63 (96)
T cd03200 1 ARFLYRLLG---PAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRSPWLVGSEFT 63 (96)
T ss_pred CchHHHHhc---ccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCCCccCCCCCC
Confidence 478888833 9999999999999999977643431 13445567888999 99999999999999
Q ss_pred hhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhc
Q 043218 150 YLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 150 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~ 192 (226)
+|||++++.+.+. + .. .+.+|+|.+|++||.+
T Consensus 64 iADi~l~~~l~~~-------~-~~---~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 64 VADIVSWCALLQT-------G-LA---SAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHHc-------c-cc---cccChHHHHHHHHHHh
Confidence 9999999877542 2 22 3579999999999975
No 84
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.4e-11 Score=91.63 Aligned_cols=169 Identities=13% Similarity=0.200 Sum_probs=123.4
Q ss_pred ChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhCCCCCCCC-CCHHHH
Q 043218 13 SPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTWQHDPLLP-QDPYET 91 (226)
Q Consensus 13 sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~~~~~l~p-~~~~~~ 91 (226)
...|..|..+|.+.++||..+.-.- .+ -.+|. |++|.|..|.++++|-..|..+...+.-. |.. -+..++
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~N----ae--fmSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~--l~s~lsE~qk 104 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRAN----AE--FMSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT--LTSWLSEDQK 104 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCC----cc--ccCCC-CCCceeeecchhhhhhhHHHHHHHHhccc--hhhhhhhHHH
Confidence 3468999999999999999875432 22 34787 89999999999999999999999998632 222 134567
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcc------------------------------------------ChHhHHHHHHHHHH
Q 043218 92 AMARFWAKFAYEKLLESAYKAMWS------------------------------------------KGEEKQKTMKEAIE 129 (226)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~ 129 (226)
+.++..+.+++..+..+-....+. +....+++.+++..
T Consensus 105 admra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdk 184 (257)
T KOG3027|consen 105 ADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDK 184 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH
Confidence 777777777766443322221110 11122667889999
Q ss_pred HHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccC-CCCchHHHHHHHHhhc
Q 043218 130 SLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILD-SQKFPAIAEWSTKFLK 192 (226)
Q Consensus 130 ~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~-~~~~p~l~~w~~~i~~ 192 (226)
.++.|. .|+..+|+.|++||-+|..+++++..+..+ -.+|.++-. ..+|+||-++++||++
T Consensus 185 c~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt--~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 185 CCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTT--RLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred HHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhh--cCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999 999999999999999999999999887532 112122210 3689999999999976
No 85
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.40 E-value=2.3e-12 Score=91.88 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHH---------hc---cChHhHHHHHHHHHHHHHHHh-hh-cCCCcccCCCCchhHHHHH
Q 043218 91 TAMARFWAKFAYEKLLESAYKA---------MW---SKGEEKQKTMKEAIESLEKIE-EL-RGKNFIGGNSIGYLDLAIG 156 (226)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~l~~le-~L-~~~~fl~G~~~t~aD~~~~ 156 (226)
++++++|+.+....+.+.+... +. ...+..+.....+.+.++.+| +| ++++|++|+++|+||++++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 4567778877766565443221 11 124445567788999999999 75 5578999999999999999
Q ss_pred HHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhc--ChhhhhcC
Q 043218 157 WISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLK--HPVIKENL 200 (226)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~--~p~~~~~~ 200 (226)
+.+.+... .+ .+. ..++|+|.+|++++.+ +|++++..
T Consensus 82 ~~~~~~~~----~~-~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEA----AG-YDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHh----cC-Ccc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 88766532 13 333 3789999999999999 99998753
No 86
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.39 E-value=1.9e-12 Score=87.62 Aligned_cols=70 Identities=24% Similarity=0.488 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcCh
Q 043218 119 EKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHP 194 (226)
Q Consensus 119 ~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p 194 (226)
..+.....+.+.|..+| .|++++|++|+++|+||+++++.+.++... + .... .+++|+|.+|+++|.++|
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~----~-~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERL----G-PDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH----T-TTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHh----C-CCcc-cccCHHHHHHHHHHHcCC
Confidence 45677889999999999 999999999999999999999999988433 2 2220 278999999999999998
No 87
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.35 E-value=9.6e-12 Score=87.22 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHh----ccC---hHhHHHHHHHHHHHHHHHh-hhc-CCCcccCCCCchhHHHHHHHH
Q 043218 89 YETAMARFWAKFAYEKLLESAYKAM----WSK---GEEKQKTMKEAIESLEKIE-ELR-GKNFIGGNSIGYLDLAIGWIS 159 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~l~~le-~L~-~~~fl~G~~~t~aD~~~~~~l 159 (226)
.++++.+.|+.++++.+.+...... +.. ....+.....+.+.+..+| .|+ +++||+| ++|+||+++++.+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 5789999999999998887632221 111 1244667888899999999 996 4589999 5999999999999
Q ss_pred hhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcCC
Q 043218 160 YWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENLP 201 (226)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~~ 201 (226)
.+... . + .++ . |++.+|.+||.+||++++.++
T Consensus 81 ~~~~~---~-g-~~l---~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 81 NRLVL---N-G-DPV---P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHH---c-C-CCC---C--HHHHHHHHHHHCCHHHHHHHh
Confidence 88732 2 4 443 2 999999999999999998653
No 88
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.34 E-value=6.4e-12 Score=85.98 Aligned_cols=70 Identities=21% Similarity=0.399 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhh
Q 043218 119 EKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVI 196 (226)
Q Consensus 119 ~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~ 196 (226)
..++....+.+.++.+| .|++++|++|+++|+||+++++.+.+. . ..+ .. ..++|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~---~-~~~-~~---~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALA---P-EGG-VD---LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHH---h-ccC-CC---hhhCcHHHHHHHHHHhCcCC
Confidence 45677889999999999 999999999999999999999887653 1 112 22 36899999999999999975
No 89
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.34 E-value=5.6e-12 Score=80.18 Aligned_cols=67 Identities=15% Similarity=0.331 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHH
Q 043218 118 EEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTK 189 (226)
Q Consensus 118 ~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 189 (226)
+..++....+.+.++.+| +|++++|++|++||+||+++++.+.++..... + .++ ...+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~-~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--D-FDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--T-CCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--C-cCc--cccCHHHHHHHhC
Confidence 356778899999999999 99999999999999999999999999865422 1 233 4789999999987
No 90
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.26 E-value=2.5e-11 Score=77.54 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=49.2
Q ss_pred cCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 11 WSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
+.+++|.+++++|++.|++|+.+.+. . . ...+|. |++|+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~--~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N--A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C--c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 34678999999999999999887321 1 1 125777 89999999999999999999999864
No 91
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.25 E-value=3.5e-11 Score=83.35 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=59.4
Q ss_pred hHhHHHHHHHHHHHHHHHh-hhcCC----------CcccCCCCchhHHHHHHHHhhhhhhHhhhcccccc--CCCCchHH
Q 043218 117 GEEKQKTMKEAIESLEKIE-ELRGK----------NFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRIL--DSQKFPAI 183 (226)
Q Consensus 117 ~~~~~~~~~~~~~~l~~le-~L~~~----------~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~--~~~~~p~l 183 (226)
.+..++....+.+.++.+| +|+++ +|++|+++|+||+++++.+.++... + .+.. ....||+|
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~-~~~~~~~~~~~P~l 98 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----G-LSRRYWGNGKRPNL 98 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----C-ccccccccccChHH
Confidence 3445677889999999999 99754 4999999999999999999887421 2 2220 02579999
Q ss_pred HHHHHHhhcChhh
Q 043218 184 AEWSTKFLKHPVI 196 (226)
Q Consensus 184 ~~w~~~i~~~p~~ 196 (226)
.+|++||.+||+|
T Consensus 99 ~~w~~rv~aRpsf 111 (111)
T cd03204 99 EAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999975
No 92
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.24 E-value=8.2e-11 Score=80.94 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhccC------hHhHHHHHHHHHHHHHHHh-hhcC--CCcccCCCCchhHHHHHHHHh
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMWSK------GEEKQKTMKEAIESLEKIE-ELRG--KNFIGGNSIGYLDLAIGWISY 160 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~le-~L~~--~~fl~G~~~t~aD~~~~~~l~ 160 (226)
++.+++.+++..++ +...+.+.++.. ++..+...+.+.+.++.+| .|++ ++|++|+++|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 46788888888766 566666655542 4455667888999999999 9987 899999999999999999998
Q ss_pred hhhhhHhhhccccccCCCCchHHHHHHHHh
Q 043218 161 WLPVWEEADGSMRILDSQKFPAIAEWSTKF 190 (226)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i 190 (226)
++.... + ... ...+|+|.+|++++
T Consensus 81 ~~~~~~---~-~~~--~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLD---P-KLL--LKKYPKLKALRERV 104 (104)
T ss_pred HHHhhC---c-hhh--HHhChhHHHHHHhC
Confidence 874321 1 111 36799999999985
No 93
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.22 E-value=3e-11 Score=83.15 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhc---------cChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHH
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMW---------SKGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWIS 159 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l 159 (226)
+++++++|+.+..+.+.+.+..... ...+..+....++.+.++.+| .|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 4788999999887767766543211 124455678899999999999 999889999999999999999998
Q ss_pred hhhhhhHhhhccccccCCCCchHHHHHHHHhh
Q 043218 160 YWLPVWEEADGSMRILDSQKFPAIAEWSTKFL 191 (226)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~ 191 (226)
.++.. .+ .+ ..++|+|.+|+++++
T Consensus 82 ~~~~~----~~-~~---~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADE----GG-FD---LADYPAIRAWLARIE 105 (105)
T ss_pred Hhccc----cC-CC---hHhCccHHHHHHhhC
Confidence 88732 13 33 367999999999974
No 94
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.21 E-value=1.7e-11 Score=83.77 Aligned_cols=94 Identities=17% Similarity=0.299 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hhcCCC--cccCCCCchhHHHHHHHHhhhhh
Q 043218 88 PYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-ELRGKN--FIGGNSIGYLDLAIGWISYWLPV 164 (226)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L~~~~--fl~G~~~t~aD~~~~~~l~~~~~ 164 (226)
+..++.+++|+++.. ............+...+.....+.+.+..++ +|+++. |++|++||+||+++++.|.....
T Consensus 3 ~~~~a~i~~W~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~ 80 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW 80 (99)
T ss_dssp -TTHHHHHHHHH-GH--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccc--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh
Confidence 445677788888440 0000000000112344667889999999999 998866 99999999999999998866532
Q ss_pred hHhhhccccccCCCCchHHHHHHHHhhc
Q 043218 165 WEEADGSMRILDSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~l~~w~~~i~~ 192 (226)
..+ ...+|+|.+|++||++
T Consensus 81 -------~~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 81 -------ADF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp -------CHH--TTTCHHHHHHHHHHHT
T ss_pred -------ccc--ccccHHHHHHHHhhcC
Confidence 111 2589999999999975
No 95
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.20 E-value=7.9e-11 Score=76.95 Aligned_cols=72 Identities=22% Similarity=0.203 Sum_probs=62.2
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++++||+.++||+|.+++.+|...|++|+.+.++-......+...++. .++|++..+|..+.++..|.+||.
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 479999999999999999999999999999888655444555566666 689999999999999999999984
No 96
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.5e-09 Score=84.94 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=121.2
Q ss_pred CChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeC-CeeeeehHHHHHHHHhhCCCCCCCCC-CHH
Q 043218 12 SSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHD-DKVIVDSFVILEYIDVTWQHDPLLPQ-DPY 89 (226)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~-g~~l~es~~I~~yL~~~~~~~~l~p~-~~~ 89 (226)
.++-|..+.+++.+++-+.+....... + .+|. |++|+|+++ |+.++.-..|..+|.....+-.+-+. ...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~----~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNP----W---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCC----C---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 578899999999999966665544322 1 2567 799999975 69999999999999884222112222 256
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhccC-------------------------------------------hHhHHHHHHH
Q 043218 90 ETAMARFWAKFAYEKLLESAYKAMWSK-------------------------------------------GEEKQKTMKE 126 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~ 126 (226)
+.+....|+.++.+.+.+.+...++.+ .+..++....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 778888889988888888777643321 1112344566
Q ss_pred HHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhcccccc-CCCCchHHHHHHHHhhc
Q 043218 127 AIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRIL-DSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 127 ~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~-~~~~~p~l~~w~~~i~~ 192 (226)
..+++..+. .|++++|++||+||--|+.++..+..+... ..++..+. ....++||.++++++..
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~--~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQV--ALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhc--cCCchhHHHHHHhcchHHHHHHHHHH
Confidence 777889999 999999999999999999999999884211 11111110 02349999999999987
No 97
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.17 E-value=8.7e-11 Score=79.75 Aligned_cols=91 Identities=19% Similarity=0.406 Sum_probs=67.6
Q ss_pred HHHHHHHHhhhhHHHHHHhcc-------ChHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhH
Q 043218 95 RFWAKFAYEKLLESAYKAMWS-------KGEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWE 166 (226)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~ 166 (226)
+.|+.+.+..+.+.....+.. .++..+.....+.+.++.+| .|++++|++|+++|+||+++++.+.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 356666666555555444332 24556777889999999999 9999999999999999999999999985432
Q ss_pred hhhccccccCCCCchHHHHHHHHh
Q 043218 167 EADGSMRILDSQKFPAIAEWSTKF 190 (226)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~i 190 (226)
.. ..+ .+.+|+|.+|++++
T Consensus 82 ~~---~~~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PL---LGL--LDEYPRLAAWYDRL 100 (100)
T ss_pred hh---hhh--hccCccHHHHHHhC
Confidence 21 112 36799999999985
No 98
>PRK10638 glutaredoxin 3; Provisional
Probab=99.15 E-value=2.4e-10 Score=75.39 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=63.0
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
|+ ++++|+.+.||||++++.+|..+|++|+.+.++... ...++.+.++. +++|++..+|..|.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 77 799999999999999999999999999998887553 45667788898 799999999999999887776543
No 99
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.14 E-value=5.7e-10 Score=78.18 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHh-hh---cCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcCh
Q 043218 119 EKQKTMKEAIESLEKIE-EL---RGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHP 194 (226)
Q Consensus 119 ~~~~~~~~~~~~l~~le-~L---~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p 194 (226)
..+.....+.+.++.+| .| ++++|++|+ +|+||+++++.+.+.. .. + .+. .|+|.+|++|+.++|
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~---~~-~-~~~-----~P~l~~~~~rv~~rP 106 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFR---TY-G-LPL-----SPAAQAYVDALLAHP 106 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHH---Hc-C-CCC-----CHHHHHHHHHHHCCH
Confidence 34556666667777777 66 467899999 9999999999887762 22 3 222 399999999999999
Q ss_pred hhhhcCC
Q 043218 195 VIKENLP 201 (226)
Q Consensus 195 ~~~~~~~ 201 (226)
++++.++
T Consensus 107 sv~~~~~ 113 (114)
T cd03194 107 AMQEWIA 113 (114)
T ss_pred HHHHHHh
Confidence 9998653
No 100
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.12 E-value=2.4e-10 Score=81.30 Aligned_cols=67 Identities=18% Similarity=0.400 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhc
Q 043218 120 KQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 120 ~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~ 192 (226)
.+.....+.+.++.+| +|++++|+.|+++|+||+++++.+.+... ..+ .++ .+.+|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~---~~~-~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARI---VSP-FPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHH---cCc-ccc--cccCChHHHHHHHHhc
Confidence 4567888999999999 99999999999999999999999888742 223 343 4689999999999976
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.11 E-value=2.7e-10 Score=76.00 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhcccc-c-cCCCCchHHHHHHHHhh
Q 043218 122 KTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMR-I-LDSQKFPAIAEWSTKFL 191 (226)
Q Consensus 122 ~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~-~-~~~~~~p~l~~w~~~i~ 191 (226)
+....+.+.++.+| .|++++|++|+++|+||+++++.+.++... .. + .. . ...+.+|+|.+|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~-~~-~-~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYA-PL-P-NSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhc-CC-C-ChHHHHHHHhCcHHHHHHHHhC
Confidence 56778899999999 999999999999999999999998877421 01 1 00 0 01357999999999974
No 102
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.06 E-value=1e-09 Score=70.31 Aligned_cols=72 Identities=22% Similarity=0.197 Sum_probs=60.1
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++++||+.+.||+|.+++.+|...|++|+.+.++-......+...... .++|++..+|..+.++..|.+||+
T Consensus 1 ~~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 1 ESVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 368999999999999999999999999998888754433344454555 589999999999999999999974
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.04 E-value=1.4e-09 Score=69.78 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 12 SSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
.||+|.++.++|.++|++|+.....- ...+|. |++|+|+++|+.+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 57999999999999999998764331 133677 89999999999999999999999875
No 104
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.93 E-value=8.9e-09 Score=73.38 Aligned_cols=72 Identities=10% Similarity=0.109 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhh-HhhhccccccCCCCchHHHHHHHHhh
Q 043218 118 EEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVW-EEADGSMRILDSQKFPAIAEWSTKFL 191 (226)
Q Consensus 118 ~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~~p~l~~w~~~i~ 191 (226)
...++....+.+.++.++ .|++++||+|++||.+|+++++++..+... .+..+ .... ...||||.+|++||.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~-l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDE-LAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChH-HHHH-HHhCcHHHHHHHhcC
Confidence 355778888999999999 999999999999999999999998877422 10001 1111 368999999999984
No 105
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.85 E-value=3e-08 Score=71.70 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=71.9
Q ss_pred CeeeeehHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-hh-c
Q 043218 61 DKVIVDSFVILEYIDVTWQHDPLLPQDPYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-EL-R 138 (226)
Q Consensus 61 g~~l~es~~I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~L-~ 138 (226)
..+..|+..-..|+..... + + ..++. ...++....+-.+....-....-.+..+..+...++.+- .+ +
T Consensus 28 yrt~~ea~~~f~yi~~~~~---f-~--~~er~----~~~~~Ga~aM~~isk~lkk~~~i~~D~r~~L~~a~~~w~~~~~~ 97 (149)
T cd03197 28 YRTWSEALASFDYITPSGY---F-G--YWEKF----FAKYVGAAAMYLISKYLKKPRLLQDDVREWLYDALNTWVAALGK 97 (149)
T ss_pred hCCHHHHHHhhhhHhcCCC---c-c--HHHHH----HHHHhhHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHhcC
Confidence 3667788888888876642 2 1 22222 223333322223333322212122445666777776666 55 4
Q ss_pred CCCcccCCCCchhHHHHHHHHhhhhhhHhhhccc-cccCCCCchHHHHHHHHhhc
Q 043218 139 GKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSM-RILDSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 139 ~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~-~~~~~~~~p~l~~w~~~i~~ 192 (226)
+++|+.|++||+||+++++.+..+. .+.+ + + ..++|+|.+|++||++
T Consensus 98 ~~~FlaGd~ptIADisvyg~l~s~e---~~~~-~~D---l~~~p~I~~W~eRm~~ 145 (149)
T cd03197 98 DRQFHGGSKPNLADLAVYGVLRSVE---GHPA-FKD---MVEETKIGEWYERMDA 145 (149)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHHH---Hhcc-ccc---hhhCcCHHHHHHHHHH
Confidence 5789999999999999999998773 3323 3 3 4689999999999976
No 106
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.82 E-value=1.8e-08 Score=64.65 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=57.2
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC-CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF-NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILE 72 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~ 72 (226)
+++||+.+.||+|++++.+|..+||+|+.+.+.-. +..+++.+.++. +++|++..+|..|.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 68999999999999999999999999999877643 234567788887 699999999998887666544
No 107
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.82 E-value=3.4e-08 Score=67.16 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=52.0
Q ss_pred hHhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHh
Q 043218 117 GEEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKF 190 (226)
Q Consensus 117 ~~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i 190 (226)
.+..+.....+.+.++.+| +|++++| +++|+||+++++.+.+.... ..+ ... ...+|+|.+|++||
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~--~~~-~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFR--HPD-LDW--RAAHPALAAWYARF 98 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhH--ccC-cch--hhhChHHHHHHHhC
Confidence 3445677899999999999 9998888 88999999999999887432 112 222 46899999999986
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.79 E-value=2e-08 Score=65.69 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=48.7
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeee
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIV 65 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~ 65 (226)
+++||+.+.||+|.+++-+|..+||+|+.+.++-..........++. .++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 58999999999999999999999999999888744322233344576 69999999886654
No 109
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.76 E-value=2e-08 Score=72.57 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=55.3
Q ss_pred HhHHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHh-hhccccccCCCCchHHHHHHHHhhc
Q 043218 118 EEKQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEE-ADGSMRILDSQKFPAIAEWSTKFLK 192 (226)
Q Consensus 118 ~~~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~i~~ 192 (226)
...++....+.+.++.++ .|++++|++|+++|.+|+.+++.+..+..... ... .... ..++|||.+|++||.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~-l~~~-~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNK-LQNH-LKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChH-HHHH-HHHCcHHHHHHHHHHH
Confidence 345667888889999999 99999999999999999999988876632100 000 0011 3679999999999975
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.74 E-value=4.6e-08 Score=62.42 Aligned_cols=70 Identities=27% Similarity=0.339 Sum_probs=54.3
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeee--eehHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVI--VDSFVILEYI 74 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l--~es~~I~~yL 74 (226)
+++||+.++||+|++++.+|...|++|..+.++-.+ ...++.+.++. +.+|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 479999999999999999999999999887665432 23446667787 6899999988776 4555555554
No 111
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.69 E-value=6e-08 Score=61.76 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=51.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC-CCchhhhhcCCCCCcccEEEeCCeeeee
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF-NKSTRLLELNPVHKKVPVLVHDDKVIVD 66 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~~P~L~~~g~~l~e 66 (226)
++++|+.++||+|++++.+|...|++|....++.. +..+++.+.+|. +++|++.++|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEec
Confidence 37999999999999999999999999998887654 234567777888 799999998876654
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.68 E-value=9.7e-08 Score=60.49 Aligned_cols=69 Identities=23% Similarity=0.168 Sum_probs=57.7
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEY 73 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~y 73 (226)
++++|+.+.||+|++++.+|..+|++|+...+.-.. ...++...++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 378999999999999999999999999987776443 34556677887 6999999999999999887653
No 113
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.63 E-value=2e-07 Score=60.00 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=55.4
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC-CCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF-NKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYI 74 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL 74 (226)
+++||+.+.||+|.+++-+|...|++|+.+.++.. +...++........++|++..+|..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 47899999999999999999999999998888754 122333333333027999999999999988887764
No 114
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.59 E-value=1.9e-06 Score=58.89 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHH-----Hhcc--ChHhHHHHHHHHHHHHHHHh-hhcC-CCcccCCCCchhHHHHHH
Q 043218 87 DPYETAMARFWAKFAYEKLLESAYK-----AMWS--KGEEKQKTMKEAIESLEKIE-ELRG-KNFIGGNSIGYLDLAIGW 157 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~le-~L~~-~~fl~G~~~t~aD~~~~~ 157 (226)
|..++++.+++..+....|++.=.. .|.. ...-.+.....+.+.+...+ .|++ ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 4568999999999998877765322 2222 22344667777888888899 8876 7899997 9999999999
Q ss_pred HHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhc
Q 043218 158 ISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKEN 199 (226)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~ 199 (226)
++.++. .. | .++ -+++..|.++.-++|++++-
T Consensus 80 ml~Rl~---~~-g-d~v-----P~~l~~Ya~~qwqrpsVQ~W 111 (117)
T PF14834_consen 80 MLNRLV---TY-G-DPV-----PERLADYAERQWQRPSVQRW 111 (117)
T ss_dssp HHHHHH---TT-T----------HHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHH---Hc-C-CCC-----CHHHHHHHHHHHCCHHHHHH
Confidence 999982 22 3 222 46999999999999999874
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.3e-07 Score=59.22 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=54.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC--Cchhhh-hcCCCCCcccEEEeCCeeeeehHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN--KSTRLL-ELNPVHKKVPVLVHDDKVIVDSFVILEY 73 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~-~~~p~~~~~P~L~~~g~~l~es~~I~~y 73 (226)
++++|+.+.||||.++.-+|..+|++|+.+.++..+ ...++. ..++. .++|++..||..+......-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999998888665 333444 44466 6999999999877755444443
No 116
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.51 E-value=3.3e-07 Score=58.59 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=44.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCe
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDK 62 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~ 62 (226)
++||+.+.||+|++++-+|..+|++|+.+.++-...........+. ..+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999888744322233333455 58999998664
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.51 E-value=5.3e-07 Score=58.65 Aligned_cols=71 Identities=18% Similarity=0.096 Sum_probs=57.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDV 76 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~ 76 (226)
+++|+.+.||+|.+++-+|...|++|+.+.++... ...++...... ..+|++..+|..+.+...+.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 47999999999999999999999999999887542 23445555555 5899999999999988888776544
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.45 E-value=1.2e-06 Score=57.86 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=59.7
Q ss_pred ceEEecccCChhHHHHHHHHHH-----cCCCceEEEcCCCC-CchhhhhcC--CCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKL-----KGVEFENIEEDIFN-KSTRLLELN--PVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~--p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++++|+.++||+|.+++-+|.. .|++|+...++-.. ...++.... +. .++|++..+|..+.+...|.+++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 4899999999999999999999 89999988777432 122333322 22 379999999999999999999998
Q ss_pred hhCC
Q 043218 76 VTWQ 79 (226)
Q Consensus 76 ~~~~ 79 (226)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8764
No 119
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.45 E-value=5.6e-07 Score=58.02 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=48.9
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCC-chhhhhcC-CCCCcccEEEe-CCeeeeeh
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNK-STRLLELN-PVHKKVPVLVH-DDKVIVDS 67 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~~~~P~L~~-~g~~l~es 67 (226)
+++||+.++||+|++++.+|...|++|+.+.++-.+. ...+.+.+ +. ..+|+++. +|..+.++
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCC
Confidence 4799999999999999999999999999777654432 34455665 76 68999975 66776643
No 120
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.37 E-value=3.6e-06 Score=57.26 Aligned_cols=70 Identities=19% Similarity=0.043 Sum_probs=56.4
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCch----hhhhcCCCCCcccEEEeCCeeeeehHHHHHH
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKST----RLLELNPVHKKVPVLVHDDKVIVDSFVILEY 73 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~~~P~L~~~g~~l~es~~I~~y 73 (226)
+++++|+-++||||.+++-+|...|++|+.+.++-.+... .+...+.. .++|.+..+|..|.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 4799999999999999999999999999988887543322 23344555 5899999999999888777663
No 121
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.36 E-value=8e-07 Score=54.61 Aligned_cols=59 Identities=27% Similarity=0.297 Sum_probs=48.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l 64 (226)
+++|+.+.||+|.+++-+|...|++|+...++... ...++.+.... .++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 47999999999999999999999999998888663 34445555455 5899999998764
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.35 E-value=3.7e-06 Score=54.90 Aligned_cols=72 Identities=22% Similarity=0.138 Sum_probs=59.3
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCc----hhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKS----TRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDV 76 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~ 76 (226)
++++|+.+.||+|.+++-+|...+++|+...++..+.. ..+.+.+.. .++|++..+|..+.++..|..+..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 37899999999999999999999999998888866432 234455555 5899999999999999999887754
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.33 E-value=4.2e-06 Score=57.80 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=56.0
Q ss_pred CceEEecccCChhHHHHHHHHHHcCC---CceEEEcCCCCC----chhhhhcCCCCCcccEEEeCCeeeeehHHHHH
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGV---EFENIEEDIFNK----STRLLELNPVHKKVPVLVHDDKVIVDSFVILE 72 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~ 72 (226)
+++++|+.++||||.+++-+|...|+ +|+.+.++-... ..++.+.+.. .+||.+..+|..|.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 47999999999999999999999999 788877774322 2345566666 589999999999988877766
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.31 E-value=4.3e-06 Score=55.36 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=55.9
Q ss_pred eEEecccCChhHHHHHHHHHHcC-----CCceEEEcCCCC-CchhhhhcCCC-CCcccEEEeCCeeeeehHHHHHHHHhh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKG-----VEFENIEEDIFN-KSTRLLELNPV-HKKVPVLVHDDKVIVDSFVILEYIDVT 77 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~~~~P~L~~~g~~l~es~~I~~yL~~~ 77 (226)
+++|+.++||||.+++-+|...+ ++|+...++-.. ...++...... ..++|++..+|..+.++..|..++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 58999999999999999999985 567766665321 12233332221 037999999999999999999999887
Q ss_pred CC
Q 043218 78 WQ 79 (226)
Q Consensus 78 ~~ 79 (226)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.10 E-value=2.7e-05 Score=50.96 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=56.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCC--ceEEEcCCCCCch----hhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVE--FENIEEDIFNKST----RLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDV 76 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~ 76 (226)
+++|+-++||+|.+++-+|...+++ |+...++..+... .+.+.... .++|++..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888877653332 23444555 4899999999999999888876643
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.08 E-value=2.2e-05 Score=53.18 Aligned_cols=71 Identities=20% Similarity=0.079 Sum_probs=53.7
Q ss_pred CceEEecc-----cCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 043218 3 TKVKLLGF-----WSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYI 74 (226)
Q Consensus 3 ~~~~L~~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL 74 (226)
+++.+|.- ++||||.+++-+|..+|++|+...++-.. ....+...+.. .++|.+..+|..|.+...+....
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 46778854 89999999999999999999987764221 12234445555 58999999999998887777643
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.99 E-value=4.2e-05 Score=51.05 Aligned_cols=71 Identities=18% Similarity=0.077 Sum_probs=54.5
Q ss_pred CceEEecc-----cCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 043218 3 TKVKLLGF-----WSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYI 74 (226)
Q Consensus 3 ~~~~L~~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL 74 (226)
.++.+|.- +.||||.+++-+|...|++|+.+.++-.. ...++.+.+.. .++|.+..+|..|.+...+....
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 35778854 69999999999999999999998876432 12334455555 58999999999999888777643
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.94 E-value=5.5e-05 Score=48.12 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHcCCC---ceEEEcCCCCCchhhhhcCCCCCcccEEEe-CCeeeeehHHHHHHH
Q 043218 12 SSPPVFRVVWALKLKGVE---FENIEEDIFNKSTRLLELNPVHKKVPVLVH-DDKVIVDSFVILEYI 74 (226)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~-~g~~l~es~~I~~yL 74 (226)
.+|-|..+.++|..++.+ |+.+..+- + ..+|. |++|+|.+ +++.+++-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n----~---~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN----P---WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC----C---CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 679999999999999999 66654431 1 34788 89999999 889999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.74 E-value=0.00013 Score=62.40 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=53.9
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhh-hc--------CCCCCcccEEEeCCeeeeehHHHH
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLL-EL--------NPVHKKVPVLVHDDKVIVDSFVIL 71 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~-~~--------~p~~~~~P~L~~~g~~l~es~~I~ 71 (226)
|. ++++|+-++||+|.++.-+|..+||+|+.+.++-.....++. .. ... .++|++..||..|.+-..+.
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHH
Confidence 66 799999999999999999999999999998887332222221 11 344 58999999998888776665
Q ss_pred H
Q 043218 72 E 72 (226)
Q Consensus 72 ~ 72 (226)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 130
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=3e-05 Score=66.28 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=83.9
Q ss_pred eCCeeeeehHHHHHHHHhhC-CCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhccChHhHHHHHHHHHHHHHHHh-h
Q 043218 59 HDDKVIVDSFVILEYIDVTW-QHDPLLPQDPYETAMARFWAKFAYEKLLESAYKAMWSKGEEKQKTMKEAIESLEKIE-E 136 (226)
Q Consensus 59 ~~g~~l~es~~I~~yL~~~~-~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le-~ 136 (226)
.+|..+.++..+..|..... +.+.+++.+ .++++++.|+++.... ....+...+..++ .
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~~ld~~ 103 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLSELDKF 103 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHHHHHhh
Confidence 35666777777777766544 345688877 7899999999988661 1234566788888 8
Q ss_pred hcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhhhcC
Q 043218 137 LRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIKENL 200 (226)
Q Consensus 137 L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~~~~ 200 (226)
|.-..||+|.++|+||+++|+.+..-.-+.+... . ...+-++.+|++-.+..++...+.
T Consensus 104 l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk---~--~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 104 LVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLK---A--KKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred hhHHHHhhccchhHHHHHHHHHHhcccchHHHHH---h--hCCchhhhhhcCcHhHHHHHHHHH
Confidence 9999999999999999999999987533222211 1 356789999998444444444443
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.44 E-value=0.00083 Score=46.76 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=53.3
Q ss_pred CceEEecc-----cCChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHH
Q 043218 3 TKVKLLGF-----WSSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEY 73 (226)
Q Consensus 3 ~~~~L~~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~y 73 (226)
+++.+|.- |.||||.++.-+|...|++|....++-.. -...+...+.. .++|-+-.+|..|.+...+...
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 35677765 58999999999999999999987665331 12334455555 5899999999999998877774
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.40 E-value=0.00089 Score=48.77 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=53.7
Q ss_pred ceEEeccc------CChhHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcCC----CCCcccEEEeCCeeeeehHHHHH
Q 043218 4 KVKLLGFW------SSPPVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELNP----VHKKVPVLVHDDKVIVDSFVILE 72 (226)
Q Consensus 4 ~~~L~~~~------~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p----~~~~~P~L~~~g~~l~es~~I~~ 72 (226)
+++||..+ ++|+|.+++.+|..+||+|+++.|+... ...++.+... . .++|.+-.+|..|.+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 36789888 8999999999999999999998887542 2334433321 2 479999999999998888777
Q ss_pred H
Q 043218 73 Y 73 (226)
Q Consensus 73 y 73 (226)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 3
No 133
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0027 Score=43.35 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=57.3
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhh----hhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRL----LELNPVHKKVPVLVHDDKVIVDSFVILEYI 74 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~----~~~~p~~~~~P~L~~~g~~l~es~~I~~yL 74 (226)
+++.+|.-..||||+++.-+|...|+++....+|-.+...++ .+..-. .++|.+-.+|+.|.....+..+-
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 468899999999999999999999999999988866443332 334444 58999999999999888877754
No 134
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.12 E-value=0.0022 Score=45.71 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhh
Q 043218 120 KQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVI 196 (226)
Q Consensus 120 ~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~ 196 (226)
.++...++...|..++ .+.......| ++|+.||.+++.|..+- -..| . +--|++.+|+++|.+.-.+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Lt---ivkg-i-----~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLT---IVKG-I-----QWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHC---TCTT-S--------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhh---hccC-C-----cCCHHHHHHHHHHHHHcCC
Confidence 3667889999999999 8886555555 89999999999999882 2222 2 2356999999999886554
No 135
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.08 E-value=0.0021 Score=40.01 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=39.4
Q ss_pred ceEEecccCChhHHHHHHHHHHc-----CCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeee
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLK-----GVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIV 65 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~ 65 (226)
++++|+.++||+|.++.-+|... +++|....+ .+ .+++...... ..+|++..+|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~--~~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDA--AE-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEc--cc-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 455554433 32 2333333333 36999999887654
No 136
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.92 E-value=0.0013 Score=45.69 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=30.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDI 37 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 37 (226)
++||+.+.||+|++++-+|..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999887753
No 137
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.91 E-value=0.0015 Score=46.67 Aligned_cols=33 Identities=15% Similarity=-0.023 Sum_probs=30.5
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
++++|+.+.||+|++++-+|..+||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 379999999999999999999999999988764
No 138
>PTZ00062 glutaredoxin; Provisional
Probab=96.87 E-value=0.0053 Score=47.29 Aligned_cols=69 Identities=20% Similarity=0.051 Sum_probs=51.5
Q ss_pred CceEEecc-----cCChhHHHHHHHHHHcCCCceEEEcCCCCC-chhhhhcCCCCCcccEEEeCCeeeeehHHHHH
Q 043218 3 TKVKLLGF-----WSSPPVFRVVWALKLKGVEFENIEEDIFNK-STRLLELNPVHKKVPVLVHDDKVIVDSFVILE 72 (226)
Q Consensus 3 ~~~~L~~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~ 72 (226)
.++.||.- |.||||+++.-+|...|++|+...++-.+. ...+...+.. .++|.+-.+|..|.+...+.+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHH
Confidence 35677744 689999999999999999999877763321 1233444545 589999999999988777766
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.85 E-value=0.0017 Score=44.52 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=29.9
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
+++|+.+.||+|++++-+|..+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999988775
No 140
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.79 E-value=0.0023 Score=44.71 Aligned_cols=32 Identities=19% Similarity=0.038 Sum_probs=30.0
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
+++|+.+.|++|++++-+|..+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 78999999999999999999999999988764
No 141
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.74 E-value=0.0078 Score=42.60 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhh
Q 043218 120 KQKTMKEAIESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVI 196 (226)
Q Consensus 120 ~~~~~~~~~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~ 196 (226)
.++...++...|..++ .+..... .++++|+.||.+|+.|..+- -..+ . .--++|..|+++|.+.-.+
T Consensus 58 t~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt---~vkg-i-----~~P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 58 TPQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLT---LVKG-L-----VFPPKVKAYLERMSALTKV 125 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhh---hhcC-C-----CCCHHHHHHHHHHHHHhCC
Confidence 3467788899999999 8855444 44579999999999999983 3323 2 2246999999999886544
No 142
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0075 Score=37.91 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=47.5
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCC-----------CCchhhhh--cCCCCCcccEEEe-CCeeee
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIF-----------NKSTRLLE--LNPVHKKVPVLVH-DDKVIV 65 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-----------~~~~~~~~--~~p~~~~~P~L~~-~g~~l~ 65 (226)
|+ +++||+...||-|....-.|+-.+++|+.+.++-+ +..++|.+ .|.. --+|.|.. +|.++.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 77 78999999999999999999999999999877532 34455542 3444 25898885 566654
No 143
>PRK10026 arsenate reductase; Provisional
Probab=96.62 E-value=0.0037 Score=45.17 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=31.8
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEc
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEE 35 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v 35 (226)
|+ ++++|+.+.|.-|++++-.|..+|++|+.+.+
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 76 89999999999999999999999999998865
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.49 E-value=0.0049 Score=44.14 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=30.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
++++|+.+.|+.|++++-+|..+|++|+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 378999999999999999999999999988775
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.46 E-value=0.0046 Score=43.29 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=29.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
+++|+.+.||+|++++-+|..+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 47999999999999999999999999988764
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.44 E-value=0.0066 Score=43.39 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=30.6
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
++++|+.+.|+.|+++.-+|..+|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 378999999999999999999999999988775
No 147
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.10 E-value=0.0094 Score=40.87 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=29.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
+++|+.+.|+.|++++-+|..+|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999988664
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.90 E-value=0.014 Score=40.60 Aligned_cols=32 Identities=16% Similarity=-0.072 Sum_probs=29.6
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
++||+.+.|+-|++++-+|..+|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999987653
No 149
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.82 E-value=0.048 Score=35.38 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=40.9
Q ss_pred ceEEecccCChhHHHHHHHHHHcC--CCceEEEcCCCCCchhhhhcCCCCCcccEEEeCC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKG--VEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDD 61 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g 61 (226)
+++||+-+.|+.|..+.-.|.... .+++...+|..+.+..+.+.+ -.+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC---TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc---CCCCEEEEcC
Confidence 479999999999999999999654 457777888775455444444 2699999877
No 150
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.017 Score=40.38 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=30.2
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
++++|+.|.|.-|++++-.|+.+||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 489999999999999999999999999977553
No 151
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.74 E-value=0.058 Score=34.51 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=39.4
Q ss_pred eEEecccCChhHHHH----HHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeee
Q 043218 5 VKLLGFWSSPPVFRV----VWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIV 65 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~ 65 (226)
+.+|. ++||.|..+ .-++...|++++...++- .++....+- ..+|++..+|..+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 66776 999999988 668888899888877761 222334343 36999999886553
No 152
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.47 E-value=0.066 Score=34.34 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=38.8
Q ss_pred ceEEecccCChhHHHHHHHHHH----cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCe
Q 043218 4 KVKLLGFWSSPPVFRVVWALKL----KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDK 62 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~ 62 (226)
++++|+.++||+|..+.-.++. .+..+....++..+.. +..+.... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCC-ccCCEEEECCE
Confidence 4789999999999988777653 3444666667755433 33333344 46999998775
No 153
>PRK10853 putative reductase; Provisional
Probab=95.33 E-value=0.031 Score=39.19 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=29.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEc
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEE 35 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v 35 (226)
+++|+.+.|.-|++++-.|..+|++|+.+.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 7999999999999999999999999997755
No 154
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.91 E-value=0.051 Score=38.54 Aligned_cols=32 Identities=19% Similarity=0.031 Sum_probs=29.8
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCCceEEEc
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVEFENIEE 35 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v 35 (226)
.+++|+.+.|.-|++++-.|..+|++|+.+.+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 58999999999999999999999999998765
No 155
>PHA02125 thioredoxin-like protein
Probab=94.60 E-value=0.14 Score=32.48 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=35.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+.+|+.++||.|+.+.-.|. ++.++...|+..+ ..++.....- ..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEEC
Confidence 78999999999999887775 4566666666443 3344444444 47999984
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.47 E-value=0.065 Score=37.16 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=28.8
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEc
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEE 35 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v 35 (226)
+++|+.+.|.-|++++-.|..+|++|+.+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999998765
No 157
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.44 E-value=0.1 Score=30.68 Aligned_cols=54 Identities=28% Similarity=0.173 Sum_probs=35.2
Q ss_pred eEEecccCChhHHHHHHHHH-----HcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALK-----LKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+.+|+..+|++|++++..+. ..++.+....++-...........+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46788899999999999998 45555555444433222222234565 68998885
No 158
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.39 E-value=0.068 Score=37.18 Aligned_cols=32 Identities=19% Similarity=0.028 Sum_probs=29.1
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
+++|+.+.|.-|++++-.|..+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987653
No 159
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.17 E-value=0.18 Score=34.57 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHc---CCCceEEEcCCCCCchh-hhhcCCCCCcccEEEeC-Ce-------------eeeehHHHHHH
Q 043218 12 SSPPVFRVVWALKLK---GVEFENIEEDIFNKSTR-LLELNPVHKKVPVLVHD-DK-------------VIVDSFVILEY 73 (226)
Q Consensus 12 ~sp~~~~v~~~l~~~---gi~~~~~~v~~~~~~~~-~~~~~p~~~~~P~L~~~-g~-------------~l~es~~I~~y 73 (226)
.||.|..+.-+|... .-..+.+.|++...-.. ...+..-+..+|+|+.+ |. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 588888888888653 22456667776643222 23344433679999952 33 68999999999
Q ss_pred HHhhCC
Q 043218 74 IDVTWQ 79 (226)
Q Consensus 74 L~~~~~ 79 (226)
|.++++
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999986
No 160
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.93 E-value=0.22 Score=32.97 Aligned_cols=60 Identities=20% Similarity=0.098 Sum_probs=37.1
Q ss_pred ceEEecccCChhHHHHHHHHHHcCC---CceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeee
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGV---EFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIV 65 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~ 65 (226)
.+++|..++||+|..+.-++...-- .++...++..+........+ - ..+|+++.+|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~-V-~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERG-I-MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcC-C-ccCCEEEECCEEEE
Confidence 5789999999999987776654322 13333444443333333334 3 36999998876544
No 161
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.65 Score=31.19 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=49.1
Q ss_pred ceEEe-----cccCChhHHHHHHHHHHcC-CCceEEEcCCCC-CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 043218 4 KVKLL-----GFWSSPPVFRVVWALKLKG-VEFENIEEDIFN-KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 4 ~~~L~-----~~~~sp~~~~v~~~l~~~g-i~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++.|| .+|-|+|+.++--+|...| ++|....|--.+ -...+...+-. .++|=|=.+|..+.+|..|.+...
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 45566 4788999999999999999 666665553221 11223333444 578998899999999888777543
No 162
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=91.84 E-value=0.71 Score=30.75 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=47.5
Q ss_pred eEEecccCCh------hHHHHHHHHHHcCCCceEEEcCCCC-CchhhhhcC----CCCCcccEEEeCCeeeeehHHHHH
Q 043218 5 VKLLGFWSSP------PVFRVVWALKLKGVEFENIEEDIFN-KSTRLLELN----PVHKKVPVLVHDDKVIVDSFVILE 72 (226)
Q Consensus 5 ~~L~~~~~sp------~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~~P~L~~~g~~l~es~~I~~ 72 (226)
++||....++ .|+++..+|.-+||+|+++.|+..+ ...+..... +. ..+|-+-.++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 5677666554 3678999999999999999887653 223333332 34 479988889999888766555
No 163
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=89.01 E-value=1.6 Score=29.49 Aligned_cols=69 Identities=22% Similarity=0.166 Sum_probs=39.5
Q ss_pred CCCceEEecccCChh------HHHHHHHHHHcCCCceEEEcCCCCC-chhhhh-c--------CCCCCcccEEEeCCeee
Q 043218 1 MATKVKLLGFWSSPP------VFRVVWALKLKGVEFENIEEDIFNK-STRLLE-L--------NPVHKKVPVLVHDDKVI 64 (226)
Q Consensus 1 M~~~~~L~~~~~sp~------~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~-~--------~p~~~~~P~L~~~g~~l 64 (226)
|. +++|....++. ++++..+|..++|+|+.+.+...+. ..+... . ++. ..+|-+..|+..+
T Consensus 1 m~--I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MV--IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYC 77 (99)
T ss_dssp -S--EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEE
T ss_pred CE--EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEE
Confidence 55 88888777654 4589999999999999887765432 222222 2 222 2346777788877
Q ss_pred eehHHHHH
Q 043218 65 VDSFVILE 72 (226)
Q Consensus 65 ~es~~I~~ 72 (226)
.+-..+-+
T Consensus 78 Gdye~f~e 85 (99)
T PF04908_consen 78 GDYEDFEE 85 (99)
T ss_dssp EEHHHHHH
T ss_pred eeHHHHHH
Confidence 76555443
No 164
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=89.00 E-value=1.6 Score=27.72 Aligned_cols=56 Identities=27% Similarity=0.258 Sum_probs=34.8
Q ss_pred eEEecccCChhHHHHHH----HHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeee
Q 043218 5 VKLLGFWSSPPVFRVVW----ALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVD 66 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~e 66 (226)
+++ ..+.||+|..+.- ++...|++++...+ ...++..+.+ . ..+|+++.||.....
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~yg-v-~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKYG-V-MSVPALVINGKVVFV 62 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHTT---SSSSEEEETTEEEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHcC-C-CCCCEEEECCEEEEE
Confidence 677 4556999996555 45566776655544 2334443433 4 379999998876543
No 165
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=88.78 E-value=1.3 Score=33.08 Aligned_cols=37 Identities=27% Similarity=0.119 Sum_probs=31.7
Q ss_pred HHHHHHHHHh-hhcCC---CcccCCC-CchhHHHHHHHHhhh
Q 043218 126 EAIESLEKIE-ELRGK---NFIGGNS-IGYLDLAIGWISYWL 162 (226)
Q Consensus 126 ~~~~~l~~le-~L~~~---~fl~G~~-~t~aD~~~~~~l~~~ 162 (226)
...+++..++ .|+.. +|++|+. +|-.|+.+++.|.-+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 4567888889 89887 9999987 999999999988775
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=87.10 E-value=0.84 Score=31.35 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=22.5
Q ss_pred ecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 8 LGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 8 ~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
|+.+.|.-|++++-+|..+|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78999999999999999999999987653
No 167
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=78.34 E-value=1.5 Score=34.17 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHh-hhcCCCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhhcChhhh
Q 043218 128 IESLEKIE-ELRGKNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFLKHPVIK 197 (226)
Q Consensus 128 ~~~l~~le-~L~~~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~~~p~~~ 197 (226)
...++.++ .|.+++|.-|.+++-+|+.++..+..- +. ...+++..+|++.+...-.+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e----------p~--s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE----------PQ--SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC----------cc--hhhhhHHHHHHHHHHHHHHHH
Confidence 45688899 999999999999999999988755332 11 356788899998887755443
No 168
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=76.90 E-value=14 Score=25.87 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=20.5
Q ss_pred eEEecccCChhHHHHHHHH----HHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWAL----KLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l----~~~gi~~~~~~v~ 36 (226)
+.-|+.++||+|+.+.=.| ...++++-...++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 4557899999999754444 3445555555554
No 169
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=73.99 E-value=7.9 Score=27.81 Aligned_cols=76 Identities=14% Similarity=0.022 Sum_probs=50.9
Q ss_pred CceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeee---ehHHHHHHHHhhC
Q 043218 3 TKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIV---DSFVILEYIDVTW 78 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~---es~~I~~yL~~~~ 78 (226)
.++..|..|.|++|..-.=.++.+|.+++....+-...-.+-..+-+.++..=+.+.+|..+= -..+|.+.|++..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 368999999999999999999999988887765533211110122111134556777775543 4578999998876
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=72.83 E-value=12 Score=24.96 Aligned_cols=52 Identities=15% Similarity=-0.061 Sum_probs=30.6
Q ss_pred eEEecccCChhHHHHHHHH--------HHcCCCceEEEcCCCCC---chhhhhcCCCCCcccEEE
Q 043218 5 VKLLGFWSSPPVFRVVWAL--------KLKGVEFENIEEDIFNK---STRLLELNPVHKKVPVLV 58 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~~P~L~ 58 (226)
+..|+.++|++|+...-.+ .+.+ .+....++.... ...+...... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 5578889999999875332 2232 455556665432 2344433334 4699777
No 171
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.40 E-value=11 Score=29.41 Aligned_cols=65 Identities=14% Similarity=-0.007 Sum_probs=47.4
Q ss_pred cccCChhHHHHHHHHHHcCCCceEEEcCCCCCc-hhhhhcCCCCCcccEEEeCCeeeeehHHHHHHH
Q 043218 9 GFWSSPPVFRVVWALKLKGVEFENIEEDIFNKS-TRLLELNPVHKKVPVLVHDDKVIVDSFVILEYI 74 (226)
Q Consensus 9 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL 74 (226)
..|-|+|++.+--+|...|++|....|--++.- ..++..+-. -+.|=|=.+|..+.+...|...+
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHh
Confidence 467899999999999999999988766533221 122344444 57898888998888877776644
No 172
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=70.35 E-value=24 Score=23.10 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=33.2
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKL----KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l 64 (226)
+..|+.++|+.|+...-.+.. .+-.+....++... .+++....-- ..+|++.. +|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 567788999999987766643 11134455555443 3333332223 46897773 56443
No 173
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=69.64 E-value=12 Score=25.73 Aligned_cols=53 Identities=11% Similarity=-0.068 Sum_probs=31.5
Q ss_pred eEEe-cccCChhHHHHHHHHHHcCCC---ceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLL-GFWSSPPVFRVVWALKLKGVE---FENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~-~~~~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+.++ +.++||+|+.++-++....-. .+...++... .+++...-.- ..+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEEE
Confidence 4455 567999999887777543322 2344455443 3444444444 47998885
No 174
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=69.44 E-value=28 Score=22.59 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=40.6
Q ss_pred eEEecccCChhHHHHHHHH-----HHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeee------eehHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWAL-----KLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVI------VDSFVIL 71 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l------~es~~I~ 71 (226)
+..|+.++|+.|+...-.+ .+.+ ++....++.... ..+...-.. ..+|++.. +|... .+...|.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 5677889999999876444 3333 566666665533 334333334 47998884 55433 2344555
Q ss_pred HHHHh
Q 043218 72 EYIDV 76 (226)
Q Consensus 72 ~yL~~ 76 (226)
.+|.+
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55543
No 175
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.60 E-value=23 Score=24.86 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=42.3
Q ss_pred ccCChhHHH----HHHHHHHcCCCceEEEcCCCCCchhhhhcCCCC------CcccEEEe-C--CeeeeehHHHHHHHHh
Q 043218 10 FWSSPPVFR----VVWALKLKGVEFENIEEDIFNKSTRLLELNPVH------KKVPVLVH-D--DKVIVDSFVILEYIDV 76 (226)
Q Consensus 10 ~~~sp~~~~----v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~------~~~P~L~~-~--g~~l~es~~I~~yL~~ 76 (226)
-+|||.|.+ ++-+|.+++-+...+.|...+++-|-..-||+. .-||+|.- + +..+.+...-..+|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 458999986 556677777788888877665544433334430 23777773 3 3456666666666655
Q ss_pred h
Q 043218 77 T 77 (226)
Q Consensus 77 ~ 77 (226)
.
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 4
No 176
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=67.23 E-value=24 Score=27.25 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=33.1
Q ss_pred ceEEecccCChhHHHHHHHHHHcCC---CceEEEcCCCCCchhhhhcCCCCCcccEEEeC
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGV---EFENIEEDIFNKSTRLLELNPVHKKVPVLVHD 60 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~ 60 (226)
.+++|+.++||+|..+.-++...-- ..+...++... .++......- ..+|++..+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V-~~vPtl~i~ 193 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGV-MSVPKIVIN 193 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCC-ccCCEEEEe
Confidence 4667899999999988776654321 23333455443 3333333333 369998864
No 177
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=65.82 E-value=10 Score=26.61 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=13.6
Q ss_pred cccEEEe--CCeeeeehHHHHHHHHhhCC
Q 043218 53 KVPVLVH--DDKVIVDSFVILEYIDVTWQ 79 (226)
Q Consensus 53 ~~P~L~~--~g~~l~es~~I~~yL~~~~~ 79 (226)
.-|-|.+ +|..+.|+.||++|+..-|-
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 4588865 57899999999999998874
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=64.59 E-value=7.3 Score=34.58 Aligned_cols=72 Identities=19% Similarity=0.069 Sum_probs=42.7
Q ss_pred ceEEecccCChhHHHHHHHHHHcCC---CceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeee----hHHHHHHHHh
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGV---EFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVD----SFVILEYIDV 76 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~e----s~~I~~yL~~ 76 (226)
.+++|..+.||||-.+.-++...-+ ..+...++-.+. +++.....- ..+|.+..++..+.+ -..++..+..
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4789999999999977666644333 234444443333 333333334 479999987755443 2345566655
Q ss_pred h
Q 043218 77 T 77 (226)
Q Consensus 77 ~ 77 (226)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 4
No 179
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=63.07 E-value=38 Score=21.84 Aligned_cols=58 Identities=9% Similarity=-0.044 Sum_probs=34.7
Q ss_pred eEEecccCChhHHHHHHHHHHc----CCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLK----GVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l 64 (226)
+..|+.++|+.|++..-.+... +..+....++......-..+.+. ..+|++.. +|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEEE
Confidence 4567889999999876666431 33455556664433322234454 36998773 56543
No 180
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=63.03 E-value=46 Score=22.73 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=35.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCC---CceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGV---EFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVIV 65 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l~ 65 (226)
+..|+.++|+-|+.+.-.+....- ..+...|+... .+.+.+...- ..+|+++. +|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEE
Confidence 446788999999977766643111 13445565443 3344443444 47998884 776654
No 181
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=62.15 E-value=23 Score=24.45 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=13.5
Q ss_pred ceEEecccCChhHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVV 20 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~ 20 (226)
-+..|+.++||+|++..
T Consensus 17 vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 17 LLLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEEeCCCCHHHHHHH
Confidence 35677889999999865
No 182
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=61.39 E-value=12 Score=33.15 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=37.7
Q ss_pred ceEEecccCChhHHHHHHHHHHcCCC---ceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeee
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLKGVE---FENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVD 66 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~e 66 (226)
.+++|..+.||||-.+.-++....+. ++...++-...++...+.+ - ..+|.+..++..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~-v-~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALG-I-QGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcC-C-cccCEEEECCcEEEe
Confidence 47899999999999877666554443 3333344333333333334 3 379999987755444
No 183
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=60.77 E-value=46 Score=22.52 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=31.2
Q ss_pred eEEecccCChhHHHHHHHH-----HHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEE--eCCee
Q 043218 5 VKLLGFWSSPPVFRVVWAL-----KLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLV--HDDKV 63 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~--~~g~~ 63 (226)
+..|+.++|+.|+...-.+ .+.|..+....|+... .+.+.....- ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 4567889999998654333 3333334444555443 2233332333 4799877 35643
No 184
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=59.61 E-value=43 Score=22.51 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=31.0
Q ss_pred ceEEecccCChhHHHHHHHH-----HHcCCCceEEEcCCCCCchhhh-hcCCCCCcccEEE
Q 043218 4 KVKLLGFWSSPPVFRVVWAL-----KLKGVEFENIEEDIFNKSTRLL-ELNPVHKKVPVLV 58 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~-~~~p~~~~~P~L~ 58 (226)
-+..|+.++||.|+...-.+ .+.+..+....++.......+. +.... ..+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 35678899999999654433 2334345555555443222332 22344 4799887
No 185
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=58.31 E-value=42 Score=20.79 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=32.1
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCe
Q 043218 5 VKLLGFWSSPPVFRVVWALKL-----KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDK 62 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~ 62 (226)
+..|+.++|+.|+...-.+.. .++.+- .++... ...+...... ..+|++.. +|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~~-~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVDE-NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECCC-ChhHHHhcCc-ccccEEEEEECCE
Confidence 567888899999987777755 444443 344332 2333333333 46898774 554
No 186
>PHA03075 glutaredoxin-like protein; Provisional
Probab=58.23 E-value=21 Score=24.81 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=48.5
Q ss_pred CCCceEEecccCChhHHHHHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 043218 1 MATKVKLLGFWSSPPVFRVVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 1 M~~~~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~ 78 (226)
|...+.|++-|.|+-|..+.-+|....=+|+...|+... +. +.. |.+-+|..++.. .=-.++.+|+...+
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fF--sK~-g~v~~lg~d~~y-~lInn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FF--SKD-GQVKVLGMDKGY-TLINNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----ee--ccC-CceEEEecccce-ehHHHHHHhhcccE
Confidence 677899999999999999999998888889998887542 11 123 577777764322 11134666666543
No 187
>PRK09381 trxA thioredoxin; Provisional
Probab=58.23 E-value=53 Score=21.86 Aligned_cols=58 Identities=10% Similarity=-0.017 Sum_probs=32.7
Q ss_pred eEEecccCChhHHHHHHHHH----HcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALK----LKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l 64 (226)
+..|+.++||.|+...-.+. ..+-.+....++......-....+. ..+|+++. +|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 45678889999997654442 2222355555665433322223344 47998774 66543
No 188
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=57.44 E-value=39 Score=22.91 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=40.6
Q ss_pred EecccCChhHHHHHHHHHHcCCCceEEEcCCC-CCchh---hhhc---CCCCCcccEEEeCCe-eeeehHHHHHHHHhh
Q 043218 7 LLGFWSSPPVFRVVWALKLKGVEFENIEEDIF-NKSTR---LLEL---NPVHKKVPVLVHDDK-VIVDSFVILEYIDVT 77 (226)
Q Consensus 7 L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~---~~~~---~p~~~~~P~L~~~g~-~l~es~~I~~yL~~~ 77 (226)
|++...||+|....-.+...+..-....++.- +.... ...+ +.. ..+-+ ..+|. ...++.++.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 57788899999888877777653344444441 11111 1112 222 23333 45665 899999998865544
No 189
>PTZ00051 thioredoxin; Provisional
Probab=54.77 E-value=56 Score=21.11 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=31.7
Q ss_pred eEEecccCChhHHHHHHHHHHc---CCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLK---GVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKV 63 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~ 63 (226)
+..|+.++|+.|+...-.+... ...+....++..+ ...+.+.... ..+|+++. +|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeE
Confidence 4578889999999776555432 1223444454432 2333333333 46898774 5544
No 190
>PHA02278 thioredoxin-like protein
Probab=54.74 E-value=63 Score=21.74 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=31.2
Q ss_pred eEEecccCChhHHHHHHHHHHc----CCCceEEEcCCCCC---chhhhhcCCCCCcccEEEe--CCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLK----GVEFENIEEDIFNK---STRLLELNPVHKKVPVLVH--DDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~~---~~~~~~~~p~~~~~P~L~~--~g~~l 64 (226)
+.-|+.++|+.|+...=.+... +.......++.... .+.+....-- ..+|++.. +|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 3456788999999666444322 22223344444422 1334332333 46998884 67554
No 191
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=54.69 E-value=22 Score=31.90 Aligned_cols=57 Identities=30% Similarity=0.322 Sum_probs=35.9
Q ss_pred ceEEecccCChhHHHHHH----HHHHc-CCCceEEEcCCCCCchhhh-hcCCCCCcccEEEeCCeeee
Q 043218 4 KVKLLGFWSSPPVFRVVW----ALKLK-GVEFENIEEDIFNKSTRLL-ELNPVHKKVPVLVHDDKVIV 65 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~-~~~p~~~~~P~L~~~g~~l~ 65 (226)
.+++|..+.||||-.+.- ++.+. +|..+.+.+... + ++. +.+ - ..+|.++.||..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~-~~~~~~~-v-~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--P-DLKDEYG-I-MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--H-HHHHhCC-c-eecCEEEECCEEEE
Confidence 478899999999986554 34444 566665544432 2 333 334 3 36999998875543
No 192
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=53.42 E-value=22 Score=24.85 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=27.3
Q ss_pred ccCChhHHHHH----HHHHHcCCCceEEEcCCCCCc------hhhhh--cCCCCCcccEEEe--CCeeeeehHH
Q 043218 10 FWSSPPVFRVV----WALKLKGVEFENIEEDIFNKS------TRLLE--LNPVHKKVPVLVH--DDKVIVDSFV 69 (226)
Q Consensus 10 ~~~sp~~~~v~----~~l~~~gi~~~~~~v~~~~~~------~~~~~--~~p~~~~~P~L~~--~g~~l~es~~ 69 (226)
-+|||.|..+. -.+....-....+.|...+++ -.|+. .-.. ..||+|+- ++..|.|...
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhh
Confidence 45899999766 344443234444444433222 23332 1123 36999994 3455665443
No 193
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=53.17 E-value=25 Score=26.14 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=26.6
Q ss_pred ceEEecccCChhHHH----HHHHHHHc-CCCceEEEcCCCC
Q 043218 4 KVKLLGFWSSPPVFR----VVWALKLK-GVEFENIEEDIFN 39 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~----v~~~l~~~-gi~~~~~~v~~~~ 39 (226)
++++|+...||||.. ++-++... ++.++...+.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 478999999999984 44445555 8888888777554
No 194
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=51.09 E-value=18 Score=24.30 Aligned_cols=21 Identities=14% Similarity=-0.146 Sum_probs=14.1
Q ss_pred ceEEecccCChhHHHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALK 24 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~ 24 (226)
.+.+|+.++||||++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 456778899999998755554
No 195
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.76 E-value=1.5e+02 Score=24.39 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=45.0
Q ss_pred eEEecccCChhHHHHHHHH----HHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeeeee------hHHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWAL----KLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVIVD------SFVILE 72 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l~e------s~~I~~ 72 (226)
+.+|+.|+|+-|....=.| +..+=.|....|+.+. .+......-- ..+|++.- +|..+.+ -..|-+
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~-~p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesqlr~ 124 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA-EPMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQLRQ 124 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc-chhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHHHH
Confidence 4577888998888654444 3444567887887654 3344433333 57998773 6655443 235777
Q ss_pred HHHhhCC
Q 043218 73 YIDVTWQ 79 (226)
Q Consensus 73 yL~~~~~ 79 (226)
+|++..|
T Consensus 125 ~ld~~~~ 131 (304)
T COG3118 125 FLDKVLP 131 (304)
T ss_pred HHHHhcC
Confidence 7777765
No 196
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.73 E-value=30 Score=27.92 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCCceEEEcCCCC-Cchhhh---hc-CCCCCcccEEEeCCeeeeehHHHHH
Q 043218 15 PVFRVVWALKLKGVEFENIEEDIFN-KSTRLL---EL-NPVHKKVPVLVHDDKVIVDSFVILE 72 (226)
Q Consensus 15 ~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~---~~-~p~~~~~P~L~~~g~~l~es~~I~~ 72 (226)
-|..||.+|+-.++.|+++.|.+.. ...++. +. .-. -.+|.+-.+|..|.....|.+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhh
Confidence 3788999999999999999999873 233332 22 123 479977789999988877766
No 197
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=48.29 E-value=76 Score=20.74 Aligned_cols=53 Identities=8% Similarity=-0.159 Sum_probs=29.5
Q ss_pred eEEecccCChhHHHHHHHHHHcCC----CceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGV----EFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+..|+.++|+.|+...-.+....- .+....|+..+. +.+.+...- ..+|++..
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~ 78 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RMLCRSQGV-NSYPSLYV 78 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HHHHHHcCC-CccCEEEE
Confidence 456888999999975554432222 244445665432 333322223 46898864
No 198
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=47.84 E-value=51 Score=21.23 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=32.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCC----CceEEEcCCCCCchhhhhcCCCCCcccEEE--eCCee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGV----EFENIEEDIFNKSTRLLELNPVHKKVPVLV--HDDKV 63 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~--~~g~~ 63 (226)
+..|+.++|+.|+...-.+....- .+....++... ...+.+.-.. ..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 456788899999976555543221 24444555443 3344333333 4699888 35644
No 199
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=46.72 E-value=64 Score=21.80 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=32.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCC---CceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeeeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGV---EFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVIVD 66 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l~e 66 (226)
+..|+.++|+.|+.+.-.++...- ......|+..+. .+.+..-- ..+|+++. +|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEE
Confidence 346788999999976655533211 123344554332 43333233 47998884 6766544
No 200
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=46.25 E-value=95 Score=21.32 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=30.4
Q ss_pred eEEecccCChhHHHHHHHHHH------cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe---CCeeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKL------KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH---DDKVIV 65 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~---~g~~l~ 65 (226)
+.-|+.++|+.|+...-.+.. .+..|-...++-.+ .+.....+..++.+|++.. +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 445778899999977554433 22234333333221 1111233444124898773 455543
No 201
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=45.89 E-value=29 Score=26.33 Aligned_cols=22 Identities=18% Similarity=-0.017 Sum_probs=18.4
Q ss_pred ceEEecccCChhHHHHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKL 25 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~ 25 (226)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4678899999999999887764
No 202
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=43.60 E-value=92 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=33.1
Q ss_pred ceEEecc---cCChhHHHHHHHHHHcC-----CCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCee
Q 043218 4 KVKLLGF---WSSPPVFRVVWALKLKG-----VEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKV 63 (226)
Q Consensus 4 ~~~L~~~---~~sp~~~~v~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~ 63 (226)
.+.+|+. +|||.|+.+.-.++... +.+....++.. ..+.+....-- ..+|++.. +|..
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~-~~~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP-EDKEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc-ccHHHHHHcCC-CccCEEEEEeCCee
Confidence 4667877 89999997776664442 33333333322 23344433334 47998885 5533
No 203
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=43.12 E-value=96 Score=20.45 Aligned_cols=56 Identities=16% Similarity=-0.002 Sum_probs=29.6
Q ss_pred eEEecccCChhHHHHHHHHHH----cC-CCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCee
Q 043218 5 VKLLGFWSSPPVFRVVWALKL----KG-VEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKV 63 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~----~g-i~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~ 63 (226)
+..|+.++|+.|+...-.+.. .+ -......++.. ..+..+..-- ..+|++.. +|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEE
Confidence 456788899999976544432 22 12333344433 2233332223 46887773 5644
No 204
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=42.77 E-value=74 Score=22.03 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=31.9
Q ss_pred EecccCChhHHHHHHHHHHcCCC----ceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeee
Q 043218 7 LLGFWSSPPVFRVVWALKLKGVE----FENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVI 64 (226)
Q Consensus 7 L~~~~~sp~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l 64 (226)
-|+.+|||-|+.+.=.+...--. .....|+..+ .+++....-- ..+|++.. +|..+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 47888999999765555332222 2334555443 3444433333 46998884 66554
No 205
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=42.70 E-value=40 Score=25.83 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=24.4
Q ss_pred CceEEecccCChhHHH----HHHHHHHcCCCceEEEcCC
Q 043218 3 TKVKLLGFWSSPPVFR----VVWALKLKGVEFENIEEDI 37 (226)
Q Consensus 3 ~~~~L~~~~~sp~~~~----v~~~l~~~gi~~~~~~v~~ 37 (226)
+++.+|+...||||.. .+-++...+++++.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 3688999999999984 4444555666666665543
No 206
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=42.10 E-value=97 Score=20.47 Aligned_cols=52 Identities=12% Similarity=0.016 Sum_probs=28.5
Q ss_pred eEEecccCChhHHHHHHHHH-----HcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALK-----LKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+..|+.++|+.|+...-.+. +.++ ....++..+..+.+.+...- ..+|++..
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~--~~~~vd~~~~~~~l~~~~~V-~~~PT~~l 78 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQI--RHLAIEESSIKPSLLSRYGV-VGFPTILL 78 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccC--ceEEEECCCCCHHHHHhcCC-eecCEEEE
Confidence 45678889999997664443 3333 23344433223333333333 46898773
No 207
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=41.22 E-value=99 Score=20.08 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=30.2
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALKL-----KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+..|+.++||.|+...-.+.. .+..+....++..+ .+.+.+...- ..+|++..
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~~ 77 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIYH 77 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEEE
Confidence 567888999999965544322 23344545555443 3333332333 46898874
No 208
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=40.45 E-value=1.5e+02 Score=22.05 Aligned_cols=59 Identities=8% Similarity=-0.102 Sum_probs=33.0
Q ss_pred EEecccCChhHHHHHHHHH---HcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeeeeeh
Q 043218 6 KLLGFWSSPPVFRVVWALK---LKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVIVDS 67 (226)
Q Consensus 6 ~L~~~~~sp~~~~v~~~l~---~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l~es 67 (226)
..|+.++|+.|+.+--.|. ..--.++...|+.... .+....+- ..+|++.. +|..+..-
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEEE
Confidence 3467789999986543331 1111344555554432 34444455 57998884 77665543
No 209
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=38.82 E-value=37 Score=21.97 Aligned_cols=53 Identities=13% Similarity=-0.046 Sum_probs=28.8
Q ss_pred ceEEecccCChhHHHHHHHH-----HHcCC-CceEEEcCCCCCchhhhhcCCCCCcccEEE
Q 043218 4 KVKLLGFWSSPPVFRVVWAL-----KLKGV-EFENIEEDIFNKSTRLLELNPVHKKVPVLV 58 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l-----~~~gi-~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~ 58 (226)
-+.+|+.++|+.|+...-.+ .+.+- .+....++.. ....+...... ..+|++.
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-AEKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-chHHHHHhCCC-CcCCEEE
Confidence 36788999999999754433 22322 1333344432 23343333333 4689875
No 210
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=38.76 E-value=1.1e+02 Score=19.80 Aligned_cols=54 Identities=11% Similarity=-0.136 Sum_probs=28.2
Q ss_pred eEEecccCChhHHHHHHHH----HHcC--CCceEEEcCCCC-CchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWAL----KLKG--VEFENIEEDIFN-KSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l----~~~g--i~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~ 59 (226)
+.+|+.++|+.|+...-.+ ...+ -.+....++... ..+.+.....- ..+|+++.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~ 81 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKY 81 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEE
Confidence 5678889999999764222 2211 223343444432 13333333233 36898774
No 211
>PRK10996 thioredoxin 2; Provisional
Probab=38.71 E-value=1.4e+02 Score=21.12 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=33.1
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKL----KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l 64 (226)
+..|+.++|+.|+...-.+.. .+-.+....++..+ .+.+.+..-- ..+|+++. +|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~-~~~l~~~~~V-~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA-ERELSARFRI-RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CHHHHHhcCC-CccCEEEEEECCEEE
Confidence 557788899999975444432 23234555555543 3344333333 46998874 66543
No 212
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=38.65 E-value=33 Score=26.98 Aligned_cols=22 Identities=5% Similarity=-0.078 Sum_probs=17.6
Q ss_pred ceEEecccCChhHHHHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALKL 25 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~ 25 (226)
.+.+|..+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 4778999999999998765543
No 213
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=37.79 E-value=64 Score=22.18 Aligned_cols=53 Identities=4% Similarity=-0.150 Sum_probs=29.7
Q ss_pred eEEecccCChhHHHHHHHHHHcCCC----ceEEEcCCCCCchhhh-hcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVE----FENIEEDIFNKSTRLL-ELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~-~~~p~~~~~P~L~~ 59 (226)
+..|+.+||+.|+...-.+....-. .....|+... ...+. +..-- ..+|++..
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I-~~~PTl~l 90 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF-FYFPVIHL 90 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC-cccCEEEE
Confidence 4578899999999776655443322 3334555432 22332 22222 36898874
No 214
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=37.25 E-value=1.5e+02 Score=21.09 Aligned_cols=59 Identities=8% Similarity=-0.063 Sum_probs=30.3
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceEEEcCCCCC-chhhhhcCCCCCcccEEEe---CCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKL----KGVEFENIEEDIFNK-STRLLELNPVHKKVPVLVH---DDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~-~~~~~~~~p~~~~~P~L~~---~g~~l 64 (226)
+..|+.++|+.|+...-.+.. .+-.++...++.... ...+...... ..+|+++. +|..+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEE
Confidence 446777899999876544432 222244445554421 1233322223 36897662 45443
No 215
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.97 E-value=1e+02 Score=20.07 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHh--hhcCCCcccCCCCchhHHHHHH
Q 043218 120 KQKTMKEAIESLEKIE--ELRGKNFIGGNSIGYLDLAIGW 157 (226)
Q Consensus 120 ~~~~~~~~~~~l~~le--~L~~~~fl~G~~~t~aD~~~~~ 157 (226)
.++..+.+....+.+| .|...-=|.|-.||+-|+.--|
T Consensus 5 ~~~fkk~fp~l~~eleg~~l~~~~~~~gy~PtV~D~L~rC 44 (98)
T COG4003 5 KEEFKKKFPALAKELEGIRLEPKIDFSGYNPTVIDFLRRC 44 (98)
T ss_pred HHHHHHHhHHHHHHhhcccccccCCcCCCCchHHHHHHHh
Confidence 4556677777778888 6766777889899999986543
No 216
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=35.21 E-value=1.8e+02 Score=21.24 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=33.1
Q ss_pred eEEecccCChhHHHHHHHHH-----HcCCCceEEEcCCCCCchhhhh-cCCC----CCcccEEEe--CCeeee
Q 043218 5 VKLLGFWSSPPVFRVVWALK-----LKGVEFENIEEDIFNKSTRLLE-LNPV----HKKVPVLVH--DDKVIV 65 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~-~~p~----~~~~P~L~~--~g~~l~ 65 (226)
+..|+.++||.|+...-.++ +.+-.++...|+..+. ++..+ .+-. .+++|+++. +|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 55788889999996654432 2233355556665432 23322 2211 023898884 676654
No 217
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=33.38 E-value=1.7e+02 Score=20.40 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=27.8
Q ss_pred cCChhHHHHHHHH----HHcCCCceEEEcCCCC------CchhhhhcCCCCC-cccEEEe--CCeeeee
Q 043218 11 WSSPPVFRVVWAL----KLKGVEFENIEEDIFN------KSTRLLELNPVHK-KVPVLVH--DDKVIVD 66 (226)
Q Consensus 11 ~~sp~~~~v~~~l----~~~gi~~~~~~v~~~~------~~~~~~~~~p~~~-~~P~L~~--~g~~l~e 66 (226)
+|||.|+.+.-.+ ....-.+....|+..+ ....+...--. . .+|++.. +|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 7999999654333 3333234445555432 12343322111 3 5998884 4444443
No 218
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=32.53 E-value=45 Score=26.59 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=16.9
Q ss_pred ceEEecccCChhHHHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALK 24 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~ 24 (226)
.+.+|..+.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 367889999999999876654
No 219
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.92 E-value=39 Score=23.47 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCceEEEcCCCCC-chhhhhcCCCCCcccEEEe---CCeeeeehHHHHHHHHhhC
Q 043218 16 VFRVVWALKLKGVEFENIEEDIFNK-STRLLELNPVHKKVPVLVH---DDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 16 ~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~~~P~L~~---~g~~l~es~~I~~yL~~~~ 78 (226)
..-++=+....|++.+-..++-... ..+-....|+.|..|+++| --.+.-|...|+.|+.++.
T Consensus 25 P~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 25 PALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3445556677888776544432110 0011112344478999887 3577788999999999985
No 220
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=31.87 E-value=1.2e+02 Score=20.08 Aligned_cols=56 Identities=7% Similarity=-0.142 Sum_probs=30.9
Q ss_pred eEEecccCChhHHHHHHHHHHcC------C----CceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCe
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKG------V----EFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDK 62 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~g------i----~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~ 62 (226)
+..|+.++|+.|+...-.+.... . .+....++... ...+.....- ..+|++.. +|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-~~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-ESDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-CHHHHHhCCC-CcCCEEEEEeCCc
Confidence 45778899999997665553211 1 23344455443 2333333333 47898873 454
No 221
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=31.42 E-value=56 Score=23.10 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=26.5
Q ss_pred ceEEecccCChhHHH----HHHHHHHc-CCCceEEEcCCC-CCchhhhhcCCCCCcccEEEe
Q 043218 4 KVKLLGFWSSPPVFR----VVWALKLK-GVEFENIEEDIF-NKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~----v~~~l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~~~~P~L~~ 59 (226)
.+.++.-+|||-|++ +.-+++.. +|+++....+-. +....|+. +-. ..+|+++.
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I~ 103 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFIF 103 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEEE
Confidence 456788899999995 34445555 666665544311 11233444 444 58999884
No 222
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=31.40 E-value=74 Score=20.85 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=29.2
Q ss_pred eEEecccCChhHHHHHHHHHHcCC----CceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGV----EFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+..|+.++|+.|+...-.+....- .+....++... .+.+.....- ..+|++..
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~~ 79 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIRL 79 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEEE
Confidence 557788999999975444432211 24444555443 2333332333 46898773
No 223
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=31.14 E-value=1.6e+02 Score=19.36 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=28.0
Q ss_pred eEEecccCChhHHHHHHHH-----HHc--CCCceEEEcCCCCCchhhh-hcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWAL-----KLK--GVEFENIEEDIFNKSTRLL-ELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l-----~~~--gi~~~~~~v~~~~~~~~~~-~~~p~~~~~P~L~~ 59 (226)
+..|+.++||.|++..-.+ .+. |..+....++... .+.+. ..+. ..+|++..
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~I--~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-YSSIASEFGV--RGYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-CHhHHhhcCC--ccccEEEE
Confidence 4567888999999654333 221 3334444454432 22332 3343 36898773
No 224
>PRK09266 hypothetical protein; Provisional
Probab=30.98 E-value=82 Score=25.14 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=39.0
Q ss_pred HHHHcCCCceEEEcCCCC--CchhhhhcCCCCCcccEEEeCCeeeeehHHHHHHHHhhC
Q 043218 22 ALKLKGVEFENIEEDIFN--KSTRLLELNPVHKKVPVLVHDDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 22 ~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~~P~L~~~g~~l~es~~I~~yL~~~~ 78 (226)
.+...|+++++..+++.+ ..++..-.|...|-+||-..++..+.....+.+.|.+.|
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~ 258 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAY 258 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHH
Confidence 455669999999888653 233333345544789999988877765567777776666
No 225
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=30.62 E-value=1.6e+02 Score=19.39 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=30.9
Q ss_pred eEEecccCChhHHHHHHHHHHcC---CCceEEEcCCCCCc--hhhhhcCCCCCcccEEEe--CCeee
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKG---VEFENIEEDIFNKS--TRLLELNPVHKKVPVLVH--DDKVI 64 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~g---i~~~~~~v~~~~~~--~~~~~~~p~~~~~P~L~~--~g~~l 64 (226)
+..|+.++|+.|+...=.+.... -......++..+.. ..+.+...- ..+|+++. +|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 44567789999986554443211 12334445543322 244433333 46898774 56543
No 226
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=29.94 E-value=69 Score=20.74 Aligned_cols=54 Identities=9% Similarity=-0.134 Sum_probs=29.9
Q ss_pred eEEecccCChhHHHHHHHHHH----cC--CCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALKL----KG--VEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~----~g--i~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+..|+.++|+.|+...-.+.. .+ -.+....++.....+.+...-.- ..+|++..
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEEE
Confidence 567889999999865433322 22 23454455544323344433334 46898773
No 227
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=29.90 E-value=2.2e+02 Score=25.36 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=46.8
Q ss_pred eEEecccCChhHHH-------HHHHHHHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCee------eeehHH
Q 043218 5 VKLLGFWSSPPVFR-------VVWALKLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKV------IVDSFV 69 (226)
Q Consensus 5 ~~L~~~~~sp~~~~-------v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~------l~es~~ 69 (226)
+..||-|||+-|.+ +--.|...|-+.....||-... ..+....-. ...|+|.. +|.. ..+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 45678899988874 4445555555777878876533 222222222 24788885 4542 457888
Q ss_pred HHHHHHhhCC
Q 043218 70 ILEYIDVTWQ 79 (226)
Q Consensus 70 I~~yL~~~~~ 79 (226)
|+.|+-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999999875
No 228
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.46 E-value=63 Score=20.61 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHcCCCceEE
Q 043218 13 SPPVFRVVWALKLKGVEFENI 33 (226)
Q Consensus 13 sp~~~~v~~~l~~~gi~~~~~ 33 (226)
-+|++|+.-.|+..|++|+..
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeee
Confidence 479999999999999999975
No 229
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=28.87 E-value=1.3e+02 Score=21.18 Aligned_cols=41 Identities=7% Similarity=0.031 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhcChhhhhcCCChhhHHHHHHHHHHHHHHHh
Q 043218 181 PAIAEWSTKFLKHPVIKENLPPRDKTLAYFHKRAEEIYADF 221 (226)
Q Consensus 181 p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (226)
.-+..+++++.+.|..++.+.........-+...+.+.+.+
T Consensus 33 ~i~~~FY~~l~~~p~~~~~~~~~~~~~~l~~~~~~~~~~l~ 73 (147)
T cd01068 33 ELVDRFYDHLRRTPETAAFLGDESVVERLKSTQRRHWVELF 73 (147)
T ss_pred HHHHHHHHHHhcChHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 35678888898999999888764444444444444444433
No 230
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=28.80 E-value=70 Score=21.90 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=20.2
Q ss_pred ccEEE-eCCeeeeehHHHHHHHHhhC
Q 043218 54 VPVLV-HDDKVIVDSFVILEYIDVTW 78 (226)
Q Consensus 54 ~P~L~-~~g~~l~es~~I~~yL~~~~ 78 (226)
+|.+. .+|.++++|..|+++.+.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H 27 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRH 27 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcch
Confidence 35444 58999999999999888875
No 231
>PF13728 TraF: F plasmid transfer operon protein
Probab=28.12 E-value=93 Score=24.17 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=24.7
Q ss_pred eEEecccCChhHH----HHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVF----RVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~----~v~~~l~~~gi~~~~~~v~ 36 (226)
+.+|+...||||+ .++.+....|+++..+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 4567778999998 4677778888887777665
No 232
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=27.73 E-value=1.7e+02 Score=18.58 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=29.4
Q ss_pred eEEecccCChhHHHHHHHHHH----cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWALKL----KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
+..|+.++|+.|+...-.+.. .+-.+....++......-..+.+- ..+|++..
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~ 74 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLL 74 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEE
Confidence 446778889999976544432 222345555554432222233343 36898774
No 233
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=27.73 E-value=1e+02 Score=19.72 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=27.1
Q ss_pred CCcccCCCCchhHHHHHHHHhhhhhhHhhhccccccCCCCchHHHHHHHHhh
Q 043218 140 KNFIGGNSIGYLDLAIGWISYWLPVWEEADGSMRILDSQKFPAIAEWSTKFL 191 (226)
Q Consensus 140 ~~fl~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~i~ 191 (226)
-+|+.. +++ |+..++++..+.. ... ... .+..-++..|.+++.
T Consensus 34 ~ky~t~--l~~-DvL~~~ll~~L~~---~~r-~~~--k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 34 LKYFTD--LGY-DVLTFCLLERLSN---PGR-SRL--KDDGTNISQWLQSLA 76 (77)
T ss_pred Hhhcch--hhH-HHHHHHHHHHHhc---ccc-hhc--CcCCCCHHHHHHHHh
Confidence 455532 333 8888888888732 112 333 455689999999874
No 234
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=27.68 E-value=3e+02 Score=21.56 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=39.9
Q ss_pred eEEecccCChhHHHHHHHHHH-----cCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeee------eehHHHH
Q 043218 5 VKLLGFWSSPPVFRVVWALKL-----KGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVI------VDSFVIL 71 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l------~es~~I~ 71 (226)
+..|+.++|+.|+...-.+.. .| .+....++..+ .+.+.+...- ..+|++.. +|..+ .....|.
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 567888999999965444322 22 23344455433 3334333333 46898773 55443 2345667
Q ss_pred HHHHhhCC
Q 043218 72 EYIDVTWQ 79 (226)
Q Consensus 72 ~yL~~~~~ 79 (226)
+++.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 77777664
No 235
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=27.63 E-value=69 Score=19.34 Aligned_cols=31 Identities=16% Similarity=-0.055 Sum_probs=19.9
Q ss_pred EEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 6 KLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 6 ~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
+||......-+..++-+|+..||++......
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6777777777999999999999998876443
No 236
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=27.33 E-value=1.8e+02 Score=18.96 Aligned_cols=55 Identities=11% Similarity=-0.155 Sum_probs=29.4
Q ss_pred ceEEecccCChhHHHHHHHHHHc----CCCceEEEcCCCC-CchhhhhcCCCCCcccEEEe
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLK----GVEFENIEEDIFN-KSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~-~~~~~~~~~p~~~~~P~L~~ 59 (226)
-+..|+.++|+.|+...-.+... +-.+....++... ....+.....- ..+|++..
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEEE
Confidence 35678889999999754333222 2123344444433 13334333333 46898773
No 237
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=27.32 E-value=1.1e+02 Score=19.09 Aligned_cols=22 Identities=9% Similarity=-0.217 Sum_probs=17.0
Q ss_pred eEEecccCChhHHHHHHHHHHc
Q 043218 5 VKLLGFWSSPPVFRVVWALKLK 26 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~ 26 (226)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3578899999999877666553
No 238
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=27.14 E-value=1.4e+02 Score=20.50 Aligned_cols=60 Identities=22% Similarity=0.113 Sum_probs=35.5
Q ss_pred eEEecccC--ChhHHHHHHHHHHcCCCc----eEEEcCCCCCchhhhhcCCCCCcccEEEe--CCeeeee
Q 043218 5 VKLLGFWS--SPPVFRVVWALKLKGVEF----ENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKVIVD 66 (226)
Q Consensus 5 ~~L~~~~~--sp~~~~v~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~l~e 66 (226)
+..|+..+ ||-|+.+.-.+...--.| ....++..+. +.+....-- ..+|+++. +|..+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-~~la~~f~V-~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-QALAARFGV-LRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-HHHHHHcCC-CcCCEEEEEECCEEEEE
Confidence 45666664 999998876665544443 3334554443 355443334 46999884 7766543
No 239
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.64 E-value=1.4e+02 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=17.8
Q ss_pred ceEEecccCChhHH----HHHHHHHHcCCCc
Q 043218 4 KVKLLGFWSSPPVF----RVVWALKLKGVEF 30 (226)
Q Consensus 4 ~~~L~~~~~sp~~~----~v~~~l~~~gi~~ 30 (226)
++.+|+.+.||+|. +..-++...+-.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 57788999999998 3444444444333
No 240
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=26.12 E-value=1.5e+02 Score=20.50 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=37.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhhHHHHHHhccCh----HhHHHHHHHHHHHHHHHh-hhcC
Q 043218 68 FVILEYIDVTWQHDPLLPQDPYETAMARFWAKFAYEKLLESAYKAMWSKG----EEKQKTMKEAIESLEKIE-ELRG 139 (226)
Q Consensus 68 ~~I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~le-~L~~ 139 (226)
.+.+.||.+..+ ++-.......-..-+.+.+++.+...+...+..++ ..+-...+.+..+..-|+ .|++
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~ 82 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS 82 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899988765 44311111111122455556666666666666532 334445566666777777 7754
No 241
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.07 E-value=1.1e+02 Score=22.56 Aligned_cols=30 Identities=10% Similarity=-0.157 Sum_probs=19.7
Q ss_pred ceEEecccCChhHHH----HHHHHHHc--CCCceEE
Q 043218 4 KVKLLGFWSSPPVFR----VVWALKLK--GVEFENI 33 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~----v~~~l~~~--gi~~~~~ 33 (226)
++.+|..+.||||.. ++-+.... +++++..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~ 37 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELH 37 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEE
Confidence 378999999999984 33334443 5555544
No 242
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=25.76 E-value=1.8e+02 Score=21.51 Aligned_cols=29 Identities=21% Similarity=0.049 Sum_probs=21.0
Q ss_pred ccCChhHH-------HHHHHHHHcCCCceEEEcCCC
Q 043218 10 FWSSPPVF-------RVVWALKLKGVEFENIEEDIF 38 (226)
Q Consensus 10 ~~~sp~~~-------~v~~~l~~~gi~~~~~~v~~~ 38 (226)
..+||-|+ .+.-.+...+-+++.+.|+.+
T Consensus 42 A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 42 AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 34788787 455566777778999988765
No 243
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=25.00 E-value=2.5e+02 Score=19.65 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=34.5
Q ss_pred EEecccCChhHHHHHH-H------HHHcCCCceEEEcCCCCCchhhhh--------cCCCCCcccEEEe---CCeeeeeh
Q 043218 6 KLLGFWSSPPVFRVVW-A------LKLKGVEFENIEEDIFNKSTRLLE--------LNPVHKKVPVLVH---DDKVIVDS 67 (226)
Q Consensus 6 ~L~~~~~sp~~~~v~~-~------l~~~gi~~~~~~v~~~~~~~~~~~--------~~p~~~~~P~L~~---~g~~l~es 67 (226)
..++..+|++|++..- . .....-.|..+.+|..+.+ +..+ ..-. +.+|+++. +|+.+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~-~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP-DVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc-HHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 3467789999997642 2 2222336777777765422 2211 1122 35897773 57777765
No 244
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=24.89 E-value=2.7e+02 Score=20.06 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=43.7
Q ss_pred CCceEEecccCChhHHHHHHHHHHcCCC--ceEEEcCCCCCchhhhh---cCCCCC-cccEEEeCCeeeeehHHHHHHHH
Q 043218 2 ATKVKLLGFWSSPPVFRVVWALKLKGVE--FENIEEDIFNKSTRLLE---LNPVHK-KVPVLVHDDKVIVDSFVILEYID 75 (226)
Q Consensus 2 ~~~~~L~~~~~sp~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~~~~---~~p~~~-~~P~L~~~g~~l~es~~I~~yL~ 75 (226)
++++.+++...||+|-..--+|..+.-. ++...+.- +....... ..|- . ..=+++.+|..+.+|.|+++-+-
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~-e~g~~~l~~~~l~~~-~~~s~~~~~~g~~~~~sdA~~~i~~ 84 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS-EPGQALLEAAGLDPE-DVDSVLLVEAGQLLVGSDAAIRILR 84 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC-chhhhHHhhcCCChh-hhheeeEecCCceEeccHHHHHHHH
Confidence 3578899999999988655555555443 44333321 22222222 2221 1 12234457899999999999776
Q ss_pred hhC
Q 043218 76 VTW 78 (226)
Q Consensus 76 ~~~ 78 (226)
...
T Consensus 85 ~L~ 87 (137)
T COG3011 85 LLP 87 (137)
T ss_pred HCC
Confidence 664
No 245
>PLN02309 5'-adenylylsulfate reductase
Probab=24.65 E-value=2.2e+02 Score=25.05 Aligned_cols=54 Identities=11% Similarity=-0.000 Sum_probs=31.0
Q ss_pred eEEecccCChhHHHHHHHH-----HHcCCCceEEEcCCCCCchhhhh-cCCCCCcccEEEe
Q 043218 5 VKLLGFWSSPPVFRVVWAL-----KLKGVEFENIEEDIFNKSTRLLE-LNPVHKKVPVLVH 59 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~-~~p~~~~~P~L~~ 59 (226)
+..|+.++|+.|+...-.+ .+.+..+....++.......+.. ..-. ..+|++..
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-~~~PTil~ 428 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-GSFPTILL 428 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC-ceeeEEEE
Confidence 5688999999999655333 23344455556665522223322 1223 46898884
No 246
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=24.59 E-value=1.4e+02 Score=22.65 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=18.6
Q ss_pred eEEecccCChhHHHH----HHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRV----VWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v----~~~l~~~gi~~~~~~v~ 36 (226)
+..|+..+||+|++- .-+.+..|+ +...|.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~--~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGF--SVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCC--EEEEEE
Confidence 556788899999975 333344454 444444
No 247
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=24.37 E-value=1.1e+02 Score=22.59 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=20.6
Q ss_pred eEEecccCChhHHHH----HHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRV----VWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v----~~~l~~~gi~~~~~~v~ 36 (226)
+.+|+...||||... +-+....++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 367889999999853 33444456666655543
No 248
>PF11563 Protoglobin: Protoglobin; PDB: 2VEE_G 3QZZ_A 3R0G_A 3QZX_A 2VEB_A 1OR6_A 1OR4_B 2W31_B.
Probab=24.34 E-value=1.3e+02 Score=21.44 Aligned_cols=39 Identities=5% Similarity=0.089 Sum_probs=26.6
Q ss_pred hHHHHHHHHhhcChhhhhcCCChhhHHHHHHHHHHHHHH
Q 043218 181 PAIAEWSTKFLKHPVIKENLPPRDKTLAYFHKRAEEIYA 219 (226)
Q Consensus 181 p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (226)
.-+..+++++.+.|.++..+.+.+.....-....+.+..
T Consensus 35 ~iv~~FY~~l~~~pe~~~~~~~~~~~~~lk~~q~~~~~~ 73 (158)
T PF11563_consen 35 EIVDDFYDHLLRFPETARIFDSESTIERLKATQRRHWRE 73 (158)
T ss_dssp HHHHHHHHHHHTSHHHHGGGCCHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 467889999999999999988744444444444444433
No 249
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=24.07 E-value=69 Score=23.14 Aligned_cols=27 Identities=7% Similarity=0.345 Sum_probs=19.7
Q ss_pred chHHHHHHHHhhcChhhhhcCCChhhHHHHH
Q 043218 180 FPAIAEWSTKFLKHPVIKENLPPRDKTLAYF 210 (226)
Q Consensus 180 ~p~l~~w~~~i~~~p~~~~~~~~~~~~~~~~ 210 (226)
...|++|.+|+.++|.+. ..+++..|+
T Consensus 111 r~~LqrfL~RV~~hP~L~----~d~~l~~FL 137 (140)
T cd06891 111 KANLQRWFNRVCSDPILI----RDEELRFFI 137 (140)
T ss_pred HHHHHHHHHHHhCChhhc----cCHHHHHHh
Confidence 468999999999999544 455555544
No 250
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=23.46 E-value=1.4e+02 Score=20.89 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=25.4
Q ss_pred ccCChhHHHHHHHHH-----HcCCCceEEEcCCCCC--chhhhhcCCCCCcccEEEeCC
Q 043218 10 FWSSPPVFRVVWALK-----LKGVEFENIEEDIFNK--STRLLELNPVHKKVPVLVHDD 61 (226)
Q Consensus 10 ~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~--~~~~~~~~p~~~~~P~L~~~g 61 (226)
..+||.|+.-.-.|. +.+-.++...|..... ...+.+.... ..|++.|.+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~--~~p~~~D~~ 89 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL--PFPVYADPD 89 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC--CCeEEECCc
Confidence 468999986433332 2223344455544321 2234444433 578887754
No 251
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=22.59 E-value=2.1e+02 Score=17.89 Aligned_cols=54 Identities=7% Similarity=-0.165 Sum_probs=30.9
Q ss_pred ceEEecccCChhHHHHHHHHHHc------CCCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 4 KVKLLGFWSSPPVFRVVWALKLK------GVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~~~------gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
-+.+|+.++|++|+...-.+... +-.+....++... ...+...-.. ..+|++..
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~~ 77 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIKL 77 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEEE
Confidence 35678888999999866655332 2334544555443 3333333233 46897763
No 252
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=22.36 E-value=90 Score=21.88 Aligned_cols=20 Identities=5% Similarity=-0.136 Sum_probs=15.8
Q ss_pred ceEEecccCChhHHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWAL 23 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l 23 (226)
++..|..+.||+|++..-.+
T Consensus 8 ~i~~f~D~~Cp~C~~~~~~l 27 (154)
T cd03023 8 TIVEFFDYNCGYCKKLAPEL 27 (154)
T ss_pred EEEEEECCCChhHHHhhHHH
Confidence 57788999999999875443
No 253
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=22.01 E-value=2.3e+02 Score=18.14 Aligned_cols=52 Identities=12% Similarity=-0.030 Sum_probs=28.3
Q ss_pred eEEecccCChhHHHHHHHH-----HHcC--CCceEEEcCCCCCchhhhhcCCCCCcccEEE
Q 043218 5 VKLLGFWSSPPVFRVVWAL-----KLKG--VEFENIEEDIFNKSTRLLELNPVHKKVPVLV 58 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~ 58 (226)
+..|+.++|+.|+...-.+ ...+ -.+....++......-....+. ..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~ 78 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLL 78 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEE
Confidence 5577888999999653332 3333 2345555554432222223333 4689876
No 254
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=21.88 E-value=5.1e+02 Score=22.14 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=41.5
Q ss_pred eEEecccCChhHHHHHHHH-----HHc--CCCceEEEcCCCCCchhhhhcCCCCCcccEEEe--CCee-------eeehH
Q 043218 5 VKLLGFWSSPPVFRVVWAL-----KLK--GVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH--DDKV-------IVDSF 68 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l-----~~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~--~g~~-------l~es~ 68 (226)
+.+|+.++|+.|+...-.+ .+. +-.+....|+..+. .++.+.-.- ..+|++.. +|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 5678889999999764322 222 22355555554432 333322233 35887763 3432 12566
Q ss_pred HHHHHHHhhCC
Q 043218 69 VILEYIDVTWQ 79 (226)
Q Consensus 69 ~I~~yL~~~~~ 79 (226)
.|..++.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888887764
No 255
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=21.80 E-value=2.2e+02 Score=17.95 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=34.0
Q ss_pred ceEEecccCChhHHHHH----HHH-HHcCCCceEEEcCCCCCchhhhhcCCCCCcccEEEe
Q 043218 4 KVKLLGFWSSPPVFRVV----WAL-KLKGVEFENIEEDIFNKSTRLLELNPVHKKVPVLVH 59 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~----~~l-~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~~P~L~~ 59 (226)
.++||-...+|.+++.. -+| ++.+-+|+...+|..+.+ +....... -..|+|+-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P-~lAe~~~i-vAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQP-QLAEEDKI-VATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH-hHHhhCCE-EEechhhh
Confidence 46788888878877532 233 445778999999977533 33333333 35677763
No 256
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.39 E-value=2e+02 Score=17.77 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=25.3
Q ss_pred eEEecccCChhHHHHHHHHHHcCCCceEEEcC
Q 043218 5 VKLLGFWSSPPVFRVVWALKLKGVEFENIEED 36 (226)
Q Consensus 5 ~~L~~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (226)
.-+..|+....+.++.-.|...|++++...++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 34556666778999999999999998877553
No 257
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.23 E-value=1.3e+02 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHcCCCceEEEcCCCC
Q 043218 12 SSPPVFRVVWALKLKGVEFENIEEDIFN 39 (226)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~ 39 (226)
.-+.+++++-.|+..|++|+......-.
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 3478999999999999999987766443
No 258
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.19 E-value=1e+02 Score=24.56 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=16.9
Q ss_pred ceEEecccCChhHHHHHHHHH
Q 043218 4 KVKLLGFWSSPPVFRVVWALK 24 (226)
Q Consensus 4 ~~~L~~~~~sp~~~~v~~~l~ 24 (226)
+++||+.|+||++.---++-.
T Consensus 155 kpTLyylPHcp~~LyeNiL~s 175 (281)
T KOG3131|consen 155 KPTLYYLPHCPYALYENILWS 175 (281)
T ss_pred ceeeEecCCCchHHHHHHHHH
Confidence 689999999999886655544
Done!