BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043219
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 189/464 (40%), Positives = 250/464 (53%), Gaps = 50/464 (10%)
Query: 30 LDKTFLFFEAQRSGKLQENQRVKWRGDSGLKDGSLQGVDLVGGYYDAGDHVKFGLPAAFT 89
L + LF+EAQRSG+L +Q+V WR DS L D QG DL GGY+DAGD VKFG P A+T
Sbjct: 9 LRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFGFPMAYT 68
Query: 90 VTMLAWGTIEYRKEITELNQMGHALWAIRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCWE 149
T+LAWG I++ + + A++W TDYF+KAHT N + QVG GD+DH W
Sbjct: 69 ATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAFWG 128
Query: 150 RAEDMTTPREAFKLDQYHPGSDLXXXXXXXXXXXXXXFKPYNSSYSELLLLHAKQLFSFA 209
R EDMT R A+K+D PGSDL F+ + +YS LL HA+QLF FA
Sbjct: 129 RPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFA 188
Query: 210 DRFRGLYDDSIKCAKQFYTSSGYSDDLLWAATWLYRATNEEYYLKYVVDNAEYMGGTGWA 269
+ +RG Y DSI A+ FY S+ Y D+L+WAA WLYRATN+ YL + G W
Sbjct: 189 NNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYLNTAESLYDEFGLQNWG 248
Query: 270 VKEFSWDNKYAGVQILLSKVLMEGRGGAYTATLKQYKAKADYFACACVQKNAGYNVHLTP 329
+WD+K +GVQ+LL+K+ + AY T++ Y +Y N TP
Sbjct: 249 -GGLNWDSKVSGVQVLLAKLTNK---QAYKDTVQSY---VNYLIN---------NQQKTP 292
Query: 330 GGLMYVREWNNMQYASAAAFLLSVYYDYLSAANAKLNCPDGQIQPQQLFDFAKSQADYIL 389
GL+Y+ W +++A+ AAF++ L AA L+ FA++Q DY L
Sbjct: 293 KGLLYIDMWGTLRHAANAAFIM------LEAAELGLSA-------SSYRQFAQTQIDYAL 339
Query: 390 GKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETWYRRNEGNPN--VL 447
G S++ G+G P HHR SS +P C W N +PN VL
Sbjct: 340 GD--GGRSFVCGFGSNPPTRPHHRSSSCPP-----APATC-----DWNTFNSPDPNYHVL 387
Query: 448 HGALVGGPDQNDKFIDDRSNYEQTEPTL-------TACAPLVGL 484
GALVGGPDQND ++DDRS+Y E +A A LV L
Sbjct: 388 SGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVAL 431
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 193/522 (36%), Positives = 266/522 (50%), Gaps = 62/522 (11%)
Query: 30 LDKTFLFFEAQRSGKLQENQRVKWRGDSGLKDGSLQGVDLVGGYYDAGDHVKFGLPAAFT 89
L K+ F+EAQRSGKL EN RV WRGDSGL DG+ G+DL GG+YDAGDHVKFG P AFT
Sbjct: 10 LQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGFPMAFT 69
Query: 90 VTMLAWGTIEYRKEITELNQMGHALWAIRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCWE 149
TMLAWG IE + QM + +RW DYF+KAH PNVL+ QVGDGD+DH W
Sbjct: 70 ATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDADHKWWG 129
Query: 150 RAEDMTTPREAFKLDQYHPGSDLXXXXXXXXXXXXXXFKPYNSSYSELLLLHAKQLFSFA 209
AE M R +FK+D PGSD+ F + +Y+ L+ HAKQL++FA
Sbjct: 130 PAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFA 189
Query: 210 DRFRGLYDDSIKCAKQFYTSSGYSDDLLWAATWLYRATNEEYYLKYVVDNAEY------- 262
D +RG+Y D + + + SGY D+L+W A WLY+AT ++ YL AEY
Sbjct: 190 DTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLA----KAEYEYDFLST 245
Query: 263 -----MGGTGWAVKEFSWDNKYAGVQILLSKVLMEGRGGAYTATLKQYKAKADYFACACV 317
+ W + +WD+K G +LL+K + + Y ++ DY+
Sbjct: 246 EQQTDLRSYRWTI---AWDDKSYGTYVLLAKETGKQK---YIDDANRW---LDYWTVGV- 295
Query: 318 QKNAGYNVHLTPGGLMYVREWNNMQYASAAAFLLSVYYDYLSAANAKLNCPDGQIQPQQL 377
G V +PGG+ + W ++YA+ AF+ VY + D ++ Q+
Sbjct: 296 ---NGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVI----------DDPVRKQRY 342
Query: 378 FDFAKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETWY 437
DFA Q +Y LG NP + SY+VG+G P + HHR + + ++ SP
Sbjct: 343 HDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDSIASPA---------- 392
Query: 438 RRNEGNPNVLHGALVGGP-DQNDKFIDDRSNYEQTEPTLTACA----PLVGLFSKLQGSS 492
N +VL+GALVGGP ND + DDR +Y E A L L + G+
Sbjct: 393 ----ENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGGTP 448
Query: 493 KTSENPVEFLHS----IASTWNVGETTYYKHKVIIKNTSQKP 530
P E + + N TT+ + K +I+N S P
Sbjct: 449 LADFPPTEEPDGPEIFVEAQINTPGTTFTEIKAMIRNQSGWP 490
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/472 (36%), Positives = 237/472 (50%), Gaps = 55/472 (11%)
Query: 30 LDKTFLFFEAQRSGKLQENQ-RVKWRGDSGLKDGSLQGVDLVGGYYDAGDHVKFGLPAAF 88
L K F+E QRSGKL + R+ WRGDSGL DG G+DL GG+YDAGDHVKF LP ++
Sbjct: 30 LQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFNLPMSY 89
Query: 89 TVTMLAWGTIEYRKEITELNQMGHALWAIRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCW 148
+ ML W EY + Q H L I+W DYF+K H + +V + QVGDG +DH W
Sbjct: 90 SAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQVGDGHADHAWW 149
Query: 149 ERAEDMTTPREAFKLDQYHPGSDLXXXXXXXXXXXXXXFKPYNSSYSELLLLHAKQLFSF 208
AE M R ++K+D+ PGS + FK + YS+ L HAK+LF F
Sbjct: 150 GPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAKELFEF 209
Query: 209 ADRFRGLYDDSIKCAKQFYTS-SGYSDDLLWAATWLYRATNEEYYLKYVVDNAEYMG--- 264
AD + DD A FY S SG+ D+L WAA WLY ATN+ YL ++ G
Sbjct: 210 ADTTKS--DDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAESYSDKWGYEP 267
Query: 265 -----GTGWAVKEFSWDNKYAGVQILLSKVLMEGRGGAYTATLKQYKAKADYFACACVQK 319
WA WD+ G +LL+++ + G Y ++++ D++
Sbjct: 268 QTNIPKYKWAQ---CWDDVTYGTYLLLARI--KNDNGKYKEAIERH---LDWW------- 312
Query: 320 NAGYN---VHLTPGGLMYVREWNNMQYASAAAFLLSVYYDYLSAANAKLNCPDGQIQPQQ 376
GYN + TP GL ++ +W +++YA+ AFL VY D+ + K +
Sbjct: 313 TTGYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDWENGDKEK---------AKT 363
Query: 377 LFDFAKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETW 436
+FA+SQADY LG S++VG+G P HHR + + + P
Sbjct: 364 YLEFARSQADYALGS--TGRSFVVGFGENPPKRPHHRTAHGSWADSQMEP---------- 411
Query: 437 YRRNEGNPNVLHGALVGGPDQNDKFIDDRSNYEQTEPTLTACAPLVGLFSKL 488
+ +VL+GALVGGPD D + DD SNY E A VGL +K+
Sbjct: 412 ----PEHRHVLYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLAKM 459
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 181/529 (34%), Positives = 260/529 (49%), Gaps = 69/529 (13%)
Query: 30 LDKTFLFFEAQRSGKLQENQRVKWRGDSGLKDGSLQGVDLVGGYYDAGDHVKFGLPAAFT 89
L K+ +F+E QRSG L ++R WR DSG+KDGS GVDL GG+YDAGDHVKF LP ++T
Sbjct: 10 LQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYT 69
Query: 90 VTMLAWGTIEYRKEITELNQMGHALWAIRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCWE 149
MLAW E + + Q + + I+W DYF+K + P V + QVGDG DH W
Sbjct: 70 SAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWG 129
Query: 150 RAEDMTTPREAFKLDQYHPGSDLXXXXXXXXXXXXXXFKPYNSSYSELLLLHAKQLFSFA 209
AE M R +FK+D PGS + FK + +Y+E + HAK LF A
Sbjct: 130 PAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMA 189
Query: 210 DRFRGLYDDSIKCAKQFYTSSGYSDDLLWAATWLYRATNEEYYLKYVVDNAE-YMGGTGW 268
D+ + D A +Y+SS + DDL WAA WLY ATN+ YL D AE Y+ W
Sbjct: 190 DKAKS--DAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYL----DKAESYV--PNW 241
Query: 269 AVKEFS----------WDNKYAGVQILLSKVLMEGRGGAYTATLKQ-YKAKADYFACACV 317
++ + WD+ + G ++LL+K+ T KQ YK +
Sbjct: 242 GKEQQTDIIAYKWGQCWDDVHYGAELLLAKL-----------TNKQLYKDSIEMNLDFWT 290
Query: 318 QKNAGYNVHLTPGGLMYVREWNNMQYASAAAFLLSVYYDYLSAANAKLNCPDGQIQPQQL 377
G V TP GL ++ +W ++++A+ AFL VY ++ +K++
Sbjct: 291 TGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSV---------Y 341
Query: 378 FDFAKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETWY 437
DF KSQ DY LG S++VGYG P H HHR + + + SP T++
Sbjct: 342 KDFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHRTAHGSWTDQMTSP--------TYH 391
Query: 438 RRNEGNPNVLHGALVGGPDQNDKFIDDRSNYEQTEPTLTACAPLVGLFSKLQGSSKTSEN 497
R + ++GALVGGPD D + D+ +NY E A G +K+ S +
Sbjct: 392 R------HTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHS--GGD 443
Query: 498 PVEFLHSIASTWNVGETTYYKHKVIIK---NTSQKPITDLKLTIENLSG 543
P+ +I N +VIIK N++ T++K + N +G
Sbjct: 444 PIPNFKAIEKITN--------DEVIIKAGLNSTGPNYTEIKAVVYNQTG 484
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 181/529 (34%), Positives = 260/529 (49%), Gaps = 69/529 (13%)
Query: 30 LDKTFLFFEAQRSGKLQENQRVKWRGDSGLKDGSLQGVDLVGGYYDAGDHVKFGLPAAFT 89
L K+ +F+E QRSG L ++R WR DSG+KDGS GVDL GG+YDAGDHVKF LP ++T
Sbjct: 10 LQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYT 69
Query: 90 VTMLAWGTIEYRKEITELNQMGHALWAIRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCWE 149
MLAW E + + Q + + I+W DYF+K + P V + QVGDG DH W
Sbjct: 70 SAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWG 129
Query: 150 RAEDMTTPREAFKLDQYHPGSDLXXXXXXXXXXXXXXFKPYNSSYSELLLLHAKQLFSFA 209
AE M R +FK+D PGS + FK + +Y+E + HAK LF A
Sbjct: 130 PAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMA 189
Query: 210 DRFRGLYDDSIKCAKQFYTSSGYSDDLLWAATWLYRATNEEYYLKYVVDNAE-YMGGTGW 268
D+ + D A +Y+SS + DDL WAA WLY ATN+ YL D AE Y+ W
Sbjct: 190 DKAKS--DAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYL----DKAESYV--PNW 241
Query: 269 AVKEFS----------WDNKYAGVQILLSKVLMEGRGGAYTATLKQ-YKAKADYFACACV 317
++ + WD+ + G ++LL+K+ T KQ YK +
Sbjct: 242 GKEQQTDIIAYKWGQXWDDVHYGAELLLAKL-----------TNKQLYKDSIEMNLDFWT 290
Query: 318 QKNAGYNVHLTPGGLMYVREWNNMQYASAAAFLLSVYYDYLSAANAKLNCPDGQIQPQQL 377
G V TP GL ++ +W ++++A+ AFL VY ++ +K++
Sbjct: 291 TGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPSKVSV---------Y 341
Query: 378 FDFAKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETWY 437
DF KSQ DY LG S++VGYG P H HHR + + + SP T++
Sbjct: 342 KDFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHRTAHGSWTDQMTSP--------TYH 391
Query: 438 RRNEGNPNVLHGALVGGPDQNDKFIDDRSNYEQTEPTLTACAPLVGLFSKLQGSSKTSEN 497
R + ++GALVGGPD D + D+ +NY E A G +K+ S +
Sbjct: 392 R------HTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHS--GGD 443
Query: 498 PVEFLHSIASTWNVGETTYYKHKVIIK---NTSQKPITDLKLTIENLSG 543
P+ +I N +VIIK N++ T++K + N +G
Sbjct: 444 PIPNFKAIEKITN--------DEVIIKAGLNSTGPNYTEIKAVVYNQTG 484
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 233/471 (49%), Gaps = 55/471 (11%)
Query: 30 LDKTFLFFEAQRSGKLQENQRVKWRGDSGLKDGSLQGVDLVGGYYDAGDHVKFGLPAAFT 89
L K +F+E Q SGKL R WRGDS LKDG G+DL GG++DAGDHVKF LP ++T
Sbjct: 32 LQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNLPMSYT 91
Query: 90 VTMLAWGTIEYRKEITELNQMGHALWAIRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCWE 149
TML+W EY+ + Q+ H L I W DYF+K H V + QVGDG DH W
Sbjct: 92 GTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDGSKDHAWWG 151
Query: 150 RAEDMTTPREAFKLDQYHPGSDLXXXXXXXXXXXXXXFKPYNSSYSELLLLHAKQLFSFA 209
AE M R +FK+ Q PGS + K N + + L HAK+L+ FA
Sbjct: 152 PAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQHAKELYEFA 211
Query: 210 DRFRGLYDDSIKCAKQFYTS-SGYSDDLLWAATWLYRATNEEYYL---KYVVDNAEYMGG 265
+ + D A +Y S SG+ D+L WAA WLY ATN+ YL + V N + G
Sbjct: 212 EVTKS--DAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAESYVQNWPKISG 269
Query: 266 TG-----WAVKEFSWDNKYAGVQILLSKVLMEGRGGAYTATLKQYKAKADYFACACVQKN 320
+ WA WD+ + G +LL+K+ + Y ++ + DY+
Sbjct: 270 SNTIDYKWA---HCWDDVHNGAALLLAKITGK---DIYKQIIESH---LDYWTT------ 314
Query: 321 AGYN---VHLTPGGLMYVREWNNMQYASAAAFLLSVYYDYLSAANAKLNCPDGQIQPQQL 377
GYN + TP GL ++ +W +++YA+ AFL VY D++ CP + +
Sbjct: 315 -GYNGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWVG-------CP--STKKEIY 364
Query: 378 FDFAKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETWY 437
F +SQ DY LG S++VG+G P HHR + HS Q +++
Sbjct: 365 RKFGESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTA--------HSSWADSQSIPSYH 414
Query: 438 RRNEGNPNVLHGALVGGPDQNDKFIDDRSNYEQTEPTLTACAPLVGLFSKL 488
R + L+GALVGGP +D + DD SNY E A VG +K+
Sbjct: 415 R------HTLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALAKM 459
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 160/472 (33%), Positives = 234/472 (49%), Gaps = 72/472 (15%)
Query: 30 LDKTFLFFEAQRSG-KLQENQRVKWRGDSGLKDGSLQGVDLVGGYYDAGDHVKFGLPAAF 88
L + +FF+A + G + EN WRG DGS GVDL GGY+DAGDHVKFGLP +
Sbjct: 10 LKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKFGLPQGY 69
Query: 89 TVTMLAWGTIEYRKEITELNQMGHALWAIRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCW 148
+ +L W E+++ L +++ TDYF+K+H + QVG+G++DH W
Sbjct: 70 SAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNADHTYW 129
Query: 149 ERAEDMTTPREA-FKLDQYHPGSDLXXXXXXXXXXXXXXFKPYNSSYSELLLLHAKQLFS 207
E+ T R + +K D P SD+ +K +S+Y+ L AK+L++
Sbjct: 130 GAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYA 189
Query: 208 FADRFRGLYDDSIKCAKQFYTSSGYSDDLLWAATWLYRATNEEYYLKYVVDNAEYMGGTG 267
+G + + FY ++ + DDL WAATWLY ATN+ Y + +AE G
Sbjct: 190 MGKANQG-----VGNGQSFYQATSFGDDLAWAATWLYTATNDSTY----ITDAEQFITLG 240
Query: 268 WAVKE--------FSWDNKYAGVQILLSKVLMEGRGGAYTATLKQYKAKADYFACACVQK 319
+ E WD+ Y + L+++ T KQ A ++
Sbjct: 241 NTMNENKMQDKWTMCWDDMYVPAALRLAQI-----------TGKQIYKDA-------IEF 282
Query: 320 NAGY---NVHLTPGGLMYVREWNNMQYASAAAFLLSVYYDYLSAANAKLNCPDGQIQPQQ 376
N Y V TPGGL ++ W ++YA+A + ++ VY K N PD Q
Sbjct: 283 NFNYWKTQVTTTPGGLKWLSNWGVLRYAAAESMVMLVY--------CKQN-PD-----QS 328
Query: 377 LFDFAKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETW 436
L D AK Q DYILG NP +MSY++GYG + +H HHR ++ G+ T+
Sbjct: 329 LLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAAN---------------GY-TY 372
Query: 437 YRRNEGNP--NVLHGALVGGPDQNDKFIDDRSNYEQTEPTLTACAPLVGLFS 486
+ P ++L GALVGGPDQNDKF+DD + Y+ TE L A LVG+ +
Sbjct: 373 ANGDNAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 144/500 (28%), Positives = 221/500 (44%), Gaps = 72/500 (14%)
Query: 30 LDKTFLFFEAQRSGK-LQENQRVKWRGDSGLKDGSLQ----------------------- 65
L + F++A G + EN + WRGD + D L
Sbjct: 44 LQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMSDGFISSNRSVLDPD 103
Query: 66 ---GVDLVGGYYDAGDHVKFGLPAAFTVTMLAWGTIEYRKEITELNQMGHALWAIRWGTD 122
VD+ GG++DAGDHVKFGLP A+ + + WG E++ + Q HA +R+ D
Sbjct: 104 GDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVILRYFND 163
Query: 123 YFMKA---HTQPNVL--WAQVGDGDSDHYCWERAEDMTTPREAFKLDQYHPGSDLXXXXX 177
YFM+ NV+ QVGDGD DH W E+ T R + + + PG+D+
Sbjct: 164 YFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATA 223
Query: 178 XXXXXXXXXFKPYNSSYSELLLLHAKQLFSFADRFRGLYDDSIKCAKQFYTSSGYSDDLL 237
FK + Y+ L +AK LF FA++ K +Y SS + DD
Sbjct: 224 ASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGPKGYYGSSKWQDDYC 283
Query: 238 WAATWLYRATNEEYYLKYVVDNAEYMGGTGWAVKEFSWDNKYAGVQILLSKV--LMEGRG 295
WAA WLY AT E+YL +Y GW W++ ++G +L+++ L +
Sbjct: 284 WAAAWLYLATQNEHYLDEAFKYYDYYAPPGWI---HCWNDVWSGTACILAEINDLYDKDS 340
Query: 296 GAYTATLKQYKAKADYFAC-------ACVQKNAGYNVHLTPGGLMYVREWNNMQYASAAA 348
+ K+ K + + K +G + +TPGG +++ +W + +Y +AA
Sbjct: 341 QNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQWGSARYNTAAQ 400
Query: 349 FLLSVYYDYLSAANAKLNCPDGQIQPQQLFDFAKSQADYILGKNPNSMSYLVGYGPKYPV 408
+ VY + P + ++A+SQ DY+LGKNP + Y+VGY
Sbjct: 401 LIALVYDKHHGDT------------PSKYANWARSQMDYLLGKNPLNRCYVVGYSSNSVK 448
Query: 409 HVHHRGSSMASVYNLHSPVGCVQGFETWYRRNEGNPNVLHGALVGGPDQNDKFIDDRSNY 468
+ HHR +S N SP + VL+GALVGGPD +D+ +D ++Y
Sbjct: 449 YPHHRAASGLKDANDSSP----------------HKYVLYGALVGGPDASDQHVDRTNDY 492
Query: 469 EQTEPTLTACAPLVGLFSKL 488
E + A VG + L
Sbjct: 493 IYNEVAIDYNAAFVGACAGL 512
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 138/372 (37%), Gaps = 54/372 (14%)
Query: 68 DLVGGYYDAGDHVKFGLPAAFTV--TMLAWGTIEYRKEITEL------NQMGHALWAIRW 119
D G++DAGD+ K+ + A TV LAW + + E L N + L +++
Sbjct: 181 DSTKGWHDAGDYNKYVVNAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSIPDFLDELKY 240
Query: 120 GTDYFMKAHTQPNVLWAQVGDGDSDHYCWERA-EDMTTPREAFKLDQYHP-GSDLXXXXX 177
D+ + P+ G G H R P + P S
Sbjct: 241 EIDWILTMQ-YPD------GSGRVAHKVSTRNFGGFIMPENEHDERFFVPWSSAATADFV 293
Query: 178 XXXXXXXXXFKPYNSSYSELLLLHAKQLFSF-ADRFRGLYDDSIKCAKQFYTSSGYSDDL 236
F+PY+ Y+E + AK + F + ++ + + Y + +DD
Sbjct: 294 AMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSDADDR 353
Query: 237 LWAATWLYRATNEEYYLKYVVDNAEYMGGTGWAVKEFSWDNKYAGVQILLSKVLMEGRGG 296
LWAA ++ +E YL+ + A A +F WDN + + L+ R G
Sbjct: 354 LWAAAEMWETLGDEEYLRDFENRAAQFSKKIEA--DFDWDNV---ANLGMFTYLLSERPG 408
Query: 297 AYTATLKQYKAKADYFACACVQKNAGYNVHLTPGGLMY-------VREWNNMQYASAAAF 349
A ++ K A + V+ + + T G Y VR+ +Q A+
Sbjct: 409 KNPALVQSIKDSLLSTADSIVRTSQNHGYGRTLGTTYYWGCNGTVVRQTMILQVANK--- 465
Query: 350 LLSVYYDYLSAANAKLNCPDGQIQPQQLFDFAKSQADYILGKNPNSMSYLVGYGPKYPVH 409
+S DY++AA ++ ++ G+N + SY+ G G P++
Sbjct: 466 -ISPNNDYVNAALDAIS--------------------HVFGRNYYNRSYVTGLGINPPMN 504
Query: 410 VHHRGSSMASVY 421
H R S ++
Sbjct: 505 PHDRRSGADGIW 516
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 381 AKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRGSSMASVYNLHSPVGCVQGFETWYRRN 440
A+ ADY+ G NP Y+ G+G + H HHR S V H G V G + ++
Sbjct: 431 AQRAADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVADDVD--HPVPGMVVGGPNRHLQD 488
Query: 441 EGNPNVLHGALVGGPDQNDKFIDDRSNYEQTEPTLTACAPLVGLFSKL 488
E + L G P + +ID + +Y E + +P V + + L
Sbjct: 489 E----IARAQLAGRPAM-EAYIDHQDSYSTNEVAVYWNSPAVFVIAAL 531
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 30 LDKTFLFFEAQRSGK-LQENQRVKW-RGDSGLKDGSLQGVDLV----GGYYDAGDHVKFG 83
L+ FF+ Q G L E++ W G D + G + GG++DAGD+ K+
Sbjct: 92 LEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDYGKYT 151
Query: 84 LPAAFTVTML 93
+PAA V L
Sbjct: 152 VPAAKAVADL 161
>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
Length = 586
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 375 QQLFDFAKSQADYILGKNPNSMSYLVGYGPKYPVHVHHRG 414
QQL FA+ ++I+G NP M L G+G P ++ G
Sbjct: 468 QQLSVFAQDALNWIVGLNPYDMCMLDGHGRNNPDYLPQYG 507
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,237,613
Number of Sequences: 62578
Number of extensions: 848598
Number of successful extensions: 1618
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 21
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)