BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043220
         (121 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P11820|CAPSH_ADE41 Hexon protein OS=Human adenovirus F serotype 41 GN=L3 PE=2 SV=2
          Length = 925

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 56  LISSGSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLKSPDVALDVKWSEQIGSI 112
           LI++G+     SD       LP  P +P +V  A    +++PD  L  K     G+I
Sbjct: 229 LITNGTDQTLTSDVNLQFFALPSTPNEPKAVLYAENVSIEAPDTHLVYKPDVAQGTI 285


>sp|O65404|ERG11_ARATH Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2
           SV=2
          Length = 516

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 57  ISSGSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLKS-PDVALDVKWSEQIGSIMRG 115
           IS+G  A FV + +A  +PL +   K F   I  G H+K+ P   +    SE+ G I+ G
Sbjct: 277 ISNGEMATFVKNTIAPQVPLKL--RKIFLKGIDEGEHIKAMPTKKMTATLSEKKGVILLG 334


>sp|Q2KIT6|PNMA2_BOVIN Paraneoplastic antigen Ma2 homolog OS=Bos taurus GN=PNMA2 PE=2 SV=1
          Length = 364

 Score = 28.9 bits (63), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 69  KVAALLPLPMMPTKPFSVRIANGAHLKSPDVALDVKWSEQIGSIMRGW 116
           +V A  P P++P +   +R+ +G+ + +P+      W EQ   I++ W
Sbjct: 148 QVIAHPPQPLLPMRYRKLRVFSGSAVPAPEEEPFEVWLEQATEIVKEW 195


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,294,432
Number of Sequences: 539616
Number of extensions: 1405258
Number of successful extensions: 3631
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3628
Number of HSP's gapped (non-prelim): 7
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)