Query 043220
Match_columns 121
No_of_seqs 132 out of 586
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.8 8.4E-19 2.9E-23 124.8 5.7 83 37-120 20-129 (148)
2 2i1a_A DNA damage-inducible pr 99.6 5.3E-16 1.8E-20 108.9 5.6 83 37-120 22-130 (148)
3 3slz_A GAG-Pro-POL polyprotein 98.4 1.9E-07 6.3E-12 65.2 3.4 77 34-117 15-115 (132)
4 1fmb_A EIAV protease; hydrolas 98.0 1.4E-05 4.6E-10 53.5 5.5 74 41-115 8-103 (104)
5 3ec0_A Protease; HIV-2, inhibi 97.4 0.00094 3.2E-08 44.2 7.6 66 43-116 10-99 (99)
6 2hs1_A HIV-1 protease; ultra-h 97.2 0.0022 7.6E-08 42.4 7.6 67 42-116 9-99 (99)
7 3ka2_A [L-Ala51;Gly51']HIV-1 p 96.7 0.0067 2.3E-07 44.8 7.4 69 41-117 8-100 (203)
8 2hah_A Protease, retropepsin; 94.6 0.035 1.2E-06 37.5 3.8 28 40-69 14-41 (116)
9 3sqf_A Protease; folded monome 93.7 0.068 2.3E-06 36.0 3.8 26 43-68 11-36 (114)
10 3ka2_A [L-Ala51;Gly51']HIV-1 p 93.4 0.41 1.4E-05 35.2 7.9 26 42-67 113-138 (203)
11 2rsp_A RSV protease; hydrolase 91.4 0.11 3.8E-06 35.4 2.4 21 48-68 27-47 (124)
12 3liy_A Protease; hydrolase, hy 87.3 0.43 1.5E-05 32.2 2.9 26 43-68 12-42 (116)
13 1lya_A Cathepsin D; lysosomal 85.4 1.1 3.9E-05 28.4 4.1 29 40-68 13-43 (97)
14 1j71_A Candidapepsin, aspartic 85.2 6 0.00021 29.8 8.8 74 46-120 202-317 (334)
15 3fv3_A SAPP1P-secreted asparti 84.2 2.2 7.6E-05 32.2 6.0 73 47-120 205-322 (339)
16 2jys_A Protease/reverse transc 81.8 3.3 0.00011 27.0 5.1 30 44-73 10-39 (107)
17 2apr_A Rhizopuspepsin; hydrola 77.4 1.8 6E-05 32.8 3.2 67 53-120 213-317 (325)
18 2pma_A Uncharacterized protein 75.6 0.77 2.6E-05 32.0 0.7 23 50-72 17-39 (146)
19 1bxo_A Protein (penicillopepsi 71.8 4.2 0.00015 30.6 4.1 31 39-69 14-44 (323)
20 1izd_A Aspartic proteinase; su 71.3 4.4 0.00015 30.5 4.1 31 39-69 14-44 (323)
21 1ibq_A Aspergillopepsin; aspar 70.5 4.6 0.00016 30.4 4.0 30 39-68 13-42 (325)
22 1b5f_A Protein (cardosin A); h 68.5 5.8 0.0002 28.6 4.1 28 40-67 13-42 (239)
23 2apr_A Rhizopuspepsin; hydrola 68.5 8.1 0.00028 29.0 5.1 31 39-69 14-46 (325)
24 1yg9_A Aspartic protease BLA G 68.4 5 0.00017 30.3 3.9 29 41-69 18-46 (330)
25 1wkr_A Polyporopepsin; hydrola 65.3 7.2 0.00025 29.4 4.2 28 41-68 13-42 (340)
26 1mpp_A Pepsin; hydrolase(acid 64.3 7.6 0.00026 29.5 4.2 30 40-69 18-49 (361)
27 1oew_A Endothiapepsin; hydrola 64.3 7.4 0.00025 29.3 4.1 30 40-69 15-46 (329)
28 2qzx_A Candidapepsin-5; aspart 63.9 7.6 0.00026 29.3 4.1 28 40-67 12-41 (342)
29 3c9x_A Trichoderma reesei aspa 63.9 7.7 0.00026 29.2 4.1 29 41-69 16-46 (329)
30 1b5f_A Protein (cardosin A); h 63.3 5.9 0.0002 28.6 3.2 29 46-74 197-232 (239)
31 1j71_A Candidapepsin, aspartic 62.9 8.2 0.00028 29.1 4.1 29 39-67 11-41 (334)
32 1dpj_A Proteinase A; proteinas 62.8 8.3 0.00028 28.9 4.1 29 40-68 13-43 (329)
33 3fv3_A SAPP1P-secreted asparti 62.7 8.3 0.00028 28.9 4.1 29 40-68 12-42 (339)
34 2qp8_A Beta-secretase 1; BACE1 61.5 8.7 0.0003 29.6 4.1 29 41-69 22-52 (395)
35 3pvk_A Candidapepsin-2; hydrol 60.3 9.7 0.00033 28.5 4.1 28 40-67 12-41 (342)
36 2ewy_A Beta-secretase 2; BACE2 59.4 10 0.00034 29.0 4.1 28 41-68 14-43 (383)
37 3aup_A SBG7S, BG, basic 7S glo 58.7 13 0.00046 28.7 4.8 31 38-68 19-51 (403)
38 3cms_A Chymosin B; hydrolase, 58.5 11 0.00037 28.2 4.1 29 40-68 14-44 (323)
39 1htr_B Gastricsin; aspartyl pr 58.1 11 0.00038 28.2 4.1 28 41-68 13-42 (329)
40 4aa9_A Chymosin; hydrolase, as 58.1 10 0.00035 28.2 3.9 28 41-68 12-41 (320)
41 1am5_A Pepsin, acid proteinase 57.6 12 0.0004 28.0 4.1 30 40-69 12-43 (324)
42 3vf3_A Beta-secretase 1; struc 57.2 13 0.00044 28.7 4.4 29 40-68 28-58 (402)
43 3cms_A Chymosin B; hydrolase, 55.7 32 0.0011 25.6 6.3 73 46-120 198-316 (323)
44 3k1w_A Renin; protease, altern 55.6 14 0.00049 27.6 4.3 29 40-68 18-48 (341)
45 1wkr_A Polyporopepsin; hydrola 55.2 11 0.00036 28.5 3.6 30 45-74 194-228 (340)
46 1tzs_A Cathepsin E; hydrolase, 54.8 11 0.00038 28.6 3.6 29 41-69 24-54 (351)
47 1wh3_A 59 kDa 2'-5'-oligoadeny 54.1 28 0.00096 20.6 4.8 44 36-79 2-46 (87)
48 2bju_A Plasmepsin II; aspartic 52.9 14 0.00049 29.6 4.1 30 40-69 138-169 (453)
49 3pvk_A Candidapepsin-2; hydrol 52.7 14 0.00047 27.7 3.8 73 47-120 202-324 (342)
50 3aup_A SBG7S, BG, basic 7S glo 52.6 11 0.00036 29.3 3.2 19 55-73 262-280 (403)
51 3lpj_A Beta-secretase 1; alzhe 52.3 15 0.00051 29.0 4.1 28 41-68 75-104 (455)
52 2x0b_A Renin; hydrolase-hormon 51.9 16 0.00053 28.5 4.1 29 41-69 62-92 (383)
53 1wgg_A Ubiquitin carboxyl-term 51.2 41 0.0014 20.8 5.4 44 37-80 3-47 (96)
54 3qvc_A Histo-aspartic protease 50.6 15 0.0005 29.4 3.9 29 41-69 138-168 (451)
55 2qzx_A Candidapepsin-5; aspart 50.4 16 0.00053 27.5 3.8 29 46-74 202-234 (342)
56 1vd2_A Protein kinase C, IOTA 50.4 32 0.0011 21.7 4.7 51 38-90 3-53 (89)
57 4aa9_A Chymosin; hydrolase, as 50.3 14 0.00047 27.5 3.5 73 46-120 195-313 (320)
58 1yg9_A Aspartic protease BLA G 49.7 14 0.00048 27.8 3.5 73 46-120 202-322 (330)
59 2ewy_A Beta-secretase 2; BACE2 49.5 8.8 0.0003 29.4 2.3 28 46-73 204-241 (383)
60 1tzs_A Cathepsin E; hydrolase, 49.4 16 0.00056 27.6 3.8 29 46-74 210-244 (351)
61 1lya_B Cathepsin D; lysosomal 48.6 10 0.00035 27.0 2.4 22 53-74 121-142 (241)
62 1mpp_A Pepsin; hydrolase(acid 48.5 15 0.0005 27.9 3.4 29 46-74 218-253 (361)
63 1qdm_A Prophytepsin; aspartic 48.1 19 0.00066 28.9 4.2 29 40-68 52-82 (478)
64 3k1w_A Renin; protease, altern 47.8 18 0.00062 27.0 3.8 28 47-74 209-242 (341)
65 1dpj_A Proteinase A; proteinas 47.6 51 0.0017 24.4 6.3 29 46-74 201-234 (329)
66 1miq_A Plasmepsin; aspartic pr 47.5 26 0.00088 26.9 4.7 29 46-74 247-278 (375)
67 1t6e_X Xylanase inhibitor; two 47.3 12 0.00039 28.9 2.7 27 46-72 213-249 (381)
68 1izd_A Aspartic proteinase; su 47.3 7.9 0.00027 29.1 1.7 24 51-74 207-230 (323)
69 3psg_A Pepsinogen; hydrolase(a 46.9 21 0.00072 27.4 4.1 29 41-69 57-87 (370)
70 1bxo_A Protein (penicillopepsi 46.5 13 0.00046 27.8 2.9 24 51-74 206-229 (323)
71 2dzi_A Ubiquitin-like protein 46.2 24 0.00083 20.4 3.5 43 37-79 3-46 (81)
72 1am5_A Pepsin, acid proteinase 46.1 14 0.00047 27.6 2.9 73 46-120 197-317 (324)
73 2qp8_A Beta-secretase 1; BACE1 44.6 12 0.0004 28.9 2.3 28 46-73 215-252 (395)
74 1v5t_A 8430435I17RIK protein; 44.3 17 0.00058 22.2 2.7 43 37-79 3-46 (90)
75 3qvc_A Histo-aspartic protease 43.6 31 0.0011 27.5 4.7 31 44-74 320-353 (451)
76 1v86_A DNA segment, CHR 7, way 42.7 51 0.0017 20.2 4.8 42 39-80 15-56 (95)
77 3vf3_A Beta-secretase 1; struc 42.4 13 0.00045 28.6 2.3 28 46-73 222-259 (402)
78 1htr_B Gastricsin; aspartyl pr 42.1 11 0.00039 28.1 1.8 29 46-74 198-233 (329)
79 1oew_A Endothiapepsin; hydrola 41.5 18 0.00061 27.1 2.9 23 52-74 212-234 (329)
80 1miq_A Plasmepsin; aspartic pr 40.2 9.7 0.00033 29.4 1.2 29 41-69 63-93 (375)
81 3vla_A EDGP; extracellular, in 39.4 62 0.0021 25.2 5.8 36 32-67 12-49 (413)
82 3lpj_A Beta-secretase 1; alzhe 39.3 15 0.00052 28.9 2.2 28 46-73 268-305 (455)
83 3v6c_B Ubiquitin; structural g 38.4 24 0.00082 21.3 2.7 46 34-79 10-56 (91)
84 1ibq_A Aspergillopepsin; aspar 38.3 16 0.00054 27.4 2.1 23 52-74 208-230 (325)
85 3c9x_A Trichoderma reesei aspa 36.4 18 0.00061 27.1 2.1 23 52-74 213-235 (329)
86 3vla_A EDGP; extracellular, in 34.0 26 0.00089 27.4 2.8 18 54-71 267-284 (413)
87 1wxv_A BAG-family molecular ch 33.3 52 0.0018 19.8 3.7 44 36-79 2-50 (92)
88 4dwf_A HLA-B-associated transc 33.2 49 0.0017 19.6 3.5 41 39-79 3-44 (90)
89 2k4v_A Uncharacterized protein 32.4 83 0.0029 21.1 4.7 40 41-80 42-85 (125)
90 4eew_A Large proline-rich prot 32.3 51 0.0017 19.5 3.5 43 37-79 13-56 (88)
91 1wx8_A Riken cDNA 4931431F19; 31.1 68 0.0023 19.3 4.0 42 38-79 14-55 (96)
92 2e1z_A Propionate kinase; TDCD 29.7 13 0.00043 30.0 0.3 47 60-106 189-241 (415)
93 1qdm_A Prophytepsin; aspartic 29.4 50 0.0017 26.4 3.8 29 46-74 240-275 (478)
94 2iir_A Acetate kinase; transfe 29.0 10 0.00035 30.4 -0.3 47 60-106 180-232 (403)
95 2bju_A Plasmepsin II; aspartic 28.3 37 0.0013 27.1 2.9 29 46-74 323-354 (453)
96 3vdz_A Ubiquitin-40S ribosomal 27.9 32 0.0011 21.8 2.0 41 39-79 33-74 (111)
97 3l7o_A Ribose-5-phosphate isom 27.4 17 0.00058 26.7 0.6 20 54-73 21-40 (225)
98 1o8b_A Ribose 5-phosphate isom 27.0 22 0.00075 25.9 1.2 20 54-73 23-42 (219)
99 1g99_A Acetate kinase; alpha/b 26.6 10 0.00036 30.4 -0.7 47 60-106 181-233 (408)
100 3psg_A Pepsinogen; hydrolase(a 26.0 32 0.0011 26.4 2.0 22 53-74 254-275 (370)
101 2f8m_A Ribose 5-phosphate isom 24.8 27 0.00092 25.9 1.3 20 54-73 30-49 (244)
102 1xtz_A Ribose-5-phosphate isom 24.8 27 0.00093 26.2 1.4 20 54-73 41-60 (264)
103 2x0b_A Renin; hydrolase-hormon 24.2 42 0.0014 26.0 2.4 22 53-74 264-285 (383)
104 4h0p_A Acetate kinase; askha ( 24.0 16 0.00056 29.6 -0.0 47 60-106 193-245 (438)
105 3dbh_I NEDD8; cell cycle, acti 22.2 93 0.0032 18.0 3.3 42 38-79 9-51 (88)
106 1wy8_A NP95-like ring finger p 22.0 1.3E+02 0.0044 17.6 4.5 43 37-79 3-48 (89)
107 4b0m_A F1 capsule-anchoring pr 21.8 1.6E+02 0.0056 19.3 4.8 53 27-80 18-79 (136)
108 3sk3_A Acetate kinase, acetoki 21.4 21 0.00073 28.7 0.2 44 60-103 198-247 (415)
109 2nly_A BH1492 protein, diverge 21.1 53 0.0018 24.3 2.3 26 54-79 129-154 (245)
110 1t3q_A Quinoline 2-oxidoreduct 20.5 1.3E+02 0.0044 20.5 4.2 25 39-63 7-31 (168)
111 1lk5_A D-ribose-5-phosphate is 20.5 21 0.00071 26.2 -0.1 20 54-73 23-42 (229)
112 1uj6_A Ribose 5-phosphate isom 20.4 21 0.00071 26.1 -0.1 20 54-73 25-44 (227)
113 2kd0_A LRR repeats and ubiquit 20.0 1.5E+02 0.005 17.5 4.3 41 39-79 10-50 (85)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.75 E-value=8.4e-19 Score=124.85 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=61.6
Q ss_pred cccCeEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeEEE--ecCCc----------------eecc--
Q 043220 37 QLRKFCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFSVR--IANGA----------------HLKS-- 96 (121)
Q Consensus 37 ~~~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~V~--va~G~----------------~l~~-- 96 (121)
....++.+.+.|||+++.+||||||+++||++++|+|+|++......+... .+++. ...|
T Consensus 20 ~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~ 99 (148)
T 3s8i_A 20 GQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSF 99 (148)
T ss_dssp --CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEE
Confidence 456788999999999999999999999999999999999975321111111 11111 1111
Q ss_pred -------ceEeecchhhhhcCCeeeecccCC
Q 043220 97 -------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 97 -------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
+|+|||||||++++. .|||++++
T Consensus 100 ~Vle~~~~d~LLGmD~L~~~~~-~ID~~~~~ 129 (148)
T 3s8i_A 100 SILEDQPMDMLLGLDMLRRHQC-SIDLKKNV 129 (148)
T ss_dssp EEETTCSSSEEECHHHHHHTTC-EEETTTTE
T ss_pred EEeCCCCcCeeccHHHHHhCCE-EEEcCCCE
Confidence 899999999999997 59999864
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.3e-16 Score=108.88 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=61.1
Q ss_pred cccCeEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeE--EEecCCc----------------eec---
Q 043220 37 QLRKFCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFS--VRIANGA----------------HLK--- 95 (121)
Q Consensus 37 ~~~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~--V~va~G~----------------~l~--- 95 (121)
...+++.+.+.|||+++.+||||||++++|++++|++++++......+. +...+|. ...
T Consensus 22 ~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~~~~~~~~~~i~ig~~~~~~~~ 101 (148)
T 2i1a_A 22 TQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSF 101 (148)
T ss_dssp -CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC-----------CEEEEEEEEEETTEEEEEEE
T ss_pred cccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcccccEEEEEEEEECCEEeceeE
Confidence 3567899999999999999999999999999999999998643222221 1111111 100
Q ss_pred -----cceEeecchhhhhcCCeeeecccCC
Q 043220 96 -----SPDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 96 -----~~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
.+|+|||||||++++. .|||++++
T Consensus 102 ~vl~~~~d~iLG~d~L~~~~~-~ID~~~~~ 130 (148)
T 2i1a_A 102 TVLDTDIDVLIGLDMLKRHLA-CVDLKENV 130 (148)
T ss_dssp EEECSSCSEEECHHHHHHTTC-EEETTTTE
T ss_pred EEecCCCCeEecHHHHhhCCE-EEECCCCE
Confidence 1789999999999988 69998764
No 3
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=98.38 E-value=1.9e-07 Score=65.19 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=53.6
Q ss_pred ecccccCeEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeEEEecCCcee-----------------c-
Q 043220 34 KCGQLRKFCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHL-----------------K- 95 (121)
Q Consensus 34 ~g~~~~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l-----------------~- 95 (121)
.|....+.-.+.++|+|+++.+|+|+||+.+.++..-+. . ..+|..+..++|... .
T Consensus 15 ~~~d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-----~-~~~p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~ 88 (132)
T 3slz_A 15 QGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-----L-SDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHS 88 (132)
T ss_dssp ---CCCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-----E-EEEEEEEECSSCEEEEEEECCEEEEETTEEEEEC
T ss_pred cCCCccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-----C-CCCceEEEccCCEEEEEEEeeeEEEECCeeecce
Confidence 445566677788999999999999999999999875333 1 123445555555322 0
Q ss_pred ------cceEeecchhhhhcCCeeeecc
Q 043220 96 ------SPDVALDVKWSEQIGSIMRGWK 117 (121)
Q Consensus 96 ------~~dvILG~~WL~~~~p~~idw~ 117 (121)
+..-|||+|||.+++.. +++.
T Consensus 89 ~lV~~~tPvnLLGrd~Ltqlg~t-L~fp 115 (132)
T 3slz_A 89 FLHVPDCPYPLLGRDLLTKLKAQ-IHFE 115 (132)
T ss_dssp CEECTTSSSCEECHHHHHHHTCE-EEEE
T ss_pred EEEECCCCccEECHhhHhhCCcE-EECC
Confidence 14468999999999984 7764
No 4
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=97.96 E-value=1.4e-05 Score=53.51 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=52.9
Q ss_pred eEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeEEEecCCc---------------eec-------cce
Q 043220 41 FCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFSVRIANGA---------------HLK-------SPD 98 (121)
Q Consensus 41 ~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~---------------~l~-------~~d 98 (121)
...++.+|+|+.+.+|+||||-.+.++.+...++++|-.+.+|..+.-.+|. +.. +..
T Consensus 8 RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p~~i~GiGG~i~v~~~~i~i~i~g~~~~gtvlv~~tp~ 87 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVETFSTPVTIKKKGRHIKTRMLVADIPV 87 (104)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCEEETTEEECCEEEEEEEEETTEEEEEEEEEESCSS
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCccEEEeCCCeEEeeEeeeEEEECCeEEEEEEEECCCCC
Confidence 4457899999999999999999999999999988887752222222222221 110 145
Q ss_pred EeecchhhhhcCCeeee
Q 043220 99 VALDVKWSEQIGSIMRG 115 (121)
Q Consensus 99 vILG~~WL~~~~p~~id 115 (121)
=|+|-|||.+.+.. +|
T Consensus 88 niiGRd~L~qlg~t-Ln 103 (104)
T 1fmb_A 88 TILGRDILQDLGAK-LV 103 (104)
T ss_dssp CEECHHHHHHTTCC-CC
T ss_pred CEecHhHHhhcCcE-Ee
Confidence 68999999999874 44
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=97.37 E-value=0.00094 Score=44.19 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=44.0
Q ss_pred EEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeEEEecCCceec-----------c-------------ce
Q 043220 43 VVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLK-----------S-------------PD 98 (121)
Q Consensus 43 ~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l~-----------~-------------~d 98 (121)
.++.+|+|+.+.+|+||||-++.+. ...+|-.- +|. ...+.|..++ | .-
T Consensus 10 ~vti~I~Gq~~e~LLDTGAD~TVl~-----~~~~Pg~w-~pk-~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV~~tPv 82 (99)
T 3ec0_A 10 VVTAYIEGQPVEVLLDTGADDSIVA-----GIELGNNY-SPK-IVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDTPI 82 (99)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEES-----SCCCCSCC-EEE-EEEETTEEEEEEEEEEEEEEETTEEEEEEEEEECCSS
T ss_pred eEEEEECCEEEEEEEecCCCceEEc-----CcccCCCC-Cce-EEEecCCcEeeeEEeeEEEEECCeEEEEEEEeCCCCc
Confidence 5779999999999999999999995 23343221 121 2333333211 1 44
Q ss_pred EeecchhhhhcCCeeeec
Q 043220 99 VALDVKWSEQIGSIMRGW 116 (121)
Q Consensus 99 vILG~~WL~~~~p~~idw 116 (121)
=|+|-|+|.+.|.. ++|
T Consensus 83 niiGRnlLtqlG~t-Lnf 99 (99)
T 3ec0_A 83 NIFGRNILTALGMS-LNL 99 (99)
T ss_dssp CEECHHHHHHHTCE-EEC
T ss_pred CeeehhhHhhcCcE-EeC
Confidence 58999999999983 553
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=97.15 E-value=0.0022 Score=42.35 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=44.2
Q ss_pred EEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeEEEecCCceec-----------c-------------c
Q 043220 42 CVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLK-----------S-------------P 97 (121)
Q Consensus 42 ~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l~-----------~-------------~ 97 (121)
-.++.+|+|+.+.+|+||||-++.++. ..+|-. .+|. ...+.|..++ | .
T Consensus 9 P~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~~-wkpk-~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV~~tP 81 (99)
T 2hs1_A 9 PLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPGR-WKPK-MIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPTP 81 (99)
T ss_dssp CEEEEEETTEEEEEEECTTCSSEEESC-----CSSCCC-CEEE-EEEETTEEEEEEEEEEEEEEETTEEEEEEEEESCCS
T ss_pred CEEEEEECCEEEEEEeccCCCcEEEec-----ccCCCC-CCCc-EEEeCCCcEeeeEeccEEEEEeCCEEEEEEEeCCCc
Confidence 347799999999999999999999984 233322 1222 2233332211 1 3
Q ss_pred eEeecchhhhhcCCeeeec
Q 043220 98 DVALDVKWSEQIGSIMRGW 116 (121)
Q Consensus 98 dvILG~~WL~~~~p~~idw 116 (121)
-=|+|-|||.+.|.. +++
T Consensus 82 vniiGRd~Ltqlg~t-Lnf 99 (99)
T 2hs1_A 82 VNIIGRNLLTQIGAT-LNF 99 (99)
T ss_dssp SCEECHHHHTTTTCE-EEC
T ss_pred cCchhHhHHHHcCCE-EeC
Confidence 348999999999884 553
No 7
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=96.66 E-value=0.0067 Score=44.83 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=47.5
Q ss_pred eEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeEEEecCCcee-----------------c-------c
Q 043220 41 FCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHL-----------------K-------S 96 (121)
Q Consensus 41 ~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l-----------------~-------~ 96 (121)
...++.+|+|+.+.+|+||||.++.+. ..++|-. .+|..+ .+-|..+ . +
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~-----~~~lpg~-w~pk~i-gGIGG~i~vrqy~~i~iei~g~~~~gtvlVg~t 80 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPGX-WKPKLI-GGIAGFIKVRQYDQIPVEIXGHKAIGTVLVGPT 80 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCSSC-EEEEEE-EETTEEEEEEEEEEEEEEETTEEEEEEEEESCC
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEe-----cccCCCC-CCceEE-EEccCcEEEEEEcceeEEEcCeEEEEEEeeCCC
Confidence 346789999999999999999999998 3555542 122222 2222211 1 1
Q ss_pred ceEeecchhhhhcCCeeeecc
Q 043220 97 PDVALDVKWSEQIGSIMRGWK 117 (121)
Q Consensus 97 ~dvILG~~WL~~~~p~~idw~ 117 (121)
..=|+|-|.|.+.+. .+++.
T Consensus 81 PvnIiGRd~LtqlG~-tLnf~ 100 (203)
T 3ka2_A 81 PVNIIGRNLLTQIGX-TLNFX 100 (203)
T ss_dssp SSCEECHHHHTTTTC-EEEGG
T ss_pred CcCccchhhhhhcCc-eEEec
Confidence 555899999999998 47775
No 8
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=94.61 E-value=0.035 Score=37.51 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=24.4
Q ss_pred CeEEEEEEECCEEEEEEecCCCcccccCHH
Q 043220 40 KFCVVATKIRFHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 40 ~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~ 69 (121)
+.+. .+|+|+.+.+|+||||-.+.|...
T Consensus 14 rP~v--ikI~Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 14 PEIL--IFVNGYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp CEEE--EEETTEEEEEEECTTCSSCEEEGG
T ss_pred CCEE--EEECCEEEEEEecCCCCcEEEccc
Confidence 4444 999999999999999999999863
No 9
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=93.69 E-value=0.068 Score=36.04 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.3
Q ss_pred EEEEEECCEEEEEEecCCCcccccCH
Q 043220 43 VVATKIRFHEVVILISSGSTANFVSD 68 (121)
Q Consensus 43 ~v~g~i~~~~v~~LIDSGAT~nFI~~ 68 (121)
.++.+|+|+.+.+|+||||-.+.|..
T Consensus 11 ~vti~I~Gq~~eaLLDTGADdTVi~~ 36 (114)
T 3sqf_A 11 SLTLWLDDKMFTGLINTGADVTIIKL 36 (114)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEEEG
T ss_pred eEEEEECCEEEEEEEccCCCceEEec
Confidence 46689999999999999999999974
No 10
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=93.39 E-value=0.41 Score=35.19 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=23.7
Q ss_pred EEEEEEECCEEEEEEecCCCcccccC
Q 043220 42 CVVATKIRFHEVVILISSGSTANFVS 67 (121)
Q Consensus 42 ~~v~g~i~~~~v~~LIDSGAT~nFI~ 67 (121)
-.++.+|+|+.+.+|+|+||-++.+.
T Consensus 113 P~~~iki~Gq~~e~LlDTGAD~TVl~ 138 (203)
T 3ka2_A 113 PLVTIRIGGQLKEALLDTGADDTVIE 138 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEEC
T ss_pred CcEEEEECCEEEeeeecccCCceeee
Confidence 45789999999999999999999995
No 11
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=91.40 E-value=0.11 Score=35.45 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.6
Q ss_pred ECCEEEEEEecCCCcccccCH
Q 043220 48 IRFHEVVILISSGSTANFVSD 68 (121)
Q Consensus 48 i~~~~v~~LIDSGAT~nFI~~ 68 (121)
|+|+.+.+|+||||-++.+..
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~ 47 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISE 47 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEET
T ss_pred CCCEEEEEEecCCCCcEEEec
Confidence 899999999999999999974
No 12
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=87.34 E-value=0.43 Score=32.16 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=23.0
Q ss_pred EEEEEEC-----CEEEEEEecCCCcccccCH
Q 043220 43 VVATKIR-----FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 43 ~v~g~i~-----~~~v~~LIDSGAT~nFI~~ 68 (121)
.++.+|+ |+.+.+|+|+||-.+.+..
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~ 42 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPI 42 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEG
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEec
Confidence 4678888 9999999999999999874
No 13
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=85.42 E-value=1.1 Score=28.44 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.3
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
....+...|+ .+++.++||+||+..++..
T Consensus 13 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CeEEEEEEECCCCeEEEEEEeCCCCceEEeE
Confidence 3466778888 7999999999999999864
No 14
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=85.17 E-value=6 Score=29.82 Aligned_cols=74 Identities=9% Similarity=0.081 Sum_probs=47.6
Q ss_pred EEECCEE----EEEEecCCCcccccCHHHHhhc----C------------CCCCCCCCeEEEecCCcee-----------
Q 043220 46 TKIRFHE----VVILISSGSTANFVSDKVAALL----P------------LPMMPTKPFSVRIANGAHL----------- 94 (121)
Q Consensus 46 g~i~~~~----v~~LIDSGAT~nFI~~~~a~rl----~------------l~~~~~~~~~V~va~G~~l----------- 94 (121)
..++++. ..++||||++..++.+...+++ + .+......+.....+|..+
T Consensus 202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~C~~~p~i~f~f~~g~~~~i~~~~y~~~~ 281 (334)
T 1j71_A 202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFDQGVKITVPLSELILKD 281 (334)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEETTTTEEECSSSCCCSEEEEEESTTCEEEEEGGGGEEEC
T ss_pred EEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHHcCCcccCCCceEEEEcCCCCCceEEEEcCCcEEEECHHHheeec
Confidence 3566654 3589999999999999887653 2 1111122345555555432
Q ss_pred ----cc-------ceEeecchhhhhcCCeeeecccCC
Q 043220 95 ----KS-------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 95 ----~~-------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
.| -..|||-.||+.+-.+ .|+.++|
T Consensus 282 ~~~~~C~~~i~~~~~~iLG~~fl~~~y~v-fD~~~~~ 317 (334)
T 1j71_A 282 SDSSICYFGISRNDANILGDNFLRRAYIV-YDLDDKT 317 (334)
T ss_dssp SSSSCEEESEEECTTCEECHHHHTTEEEE-EETTTTE
T ss_pred CCCCeeEEEEeECCCcEEChHhhccEEEE-EECCCCE
Confidence 14 3479999999998774 7876653
No 15
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=84.25 E-value=2.2 Score=32.18 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=47.9
Q ss_pred EECCEE----EEEEecCCCcccccCHHHHhhc----CCCC--------------C--CCCCeEEEecCCceec-------
Q 043220 47 KIRFHE----VVILISSGSTANFVSDKVAALL----PLPM--------------M--PTKPFSVRIANGAHLK------- 95 (121)
Q Consensus 47 ~i~~~~----v~~LIDSGAT~nFI~~~~a~rl----~l~~--------------~--~~~~~~V~va~G~~l~------- 95 (121)
.++++. ..++||||.+..++....++++ +... . ....+....++|..+.
T Consensus 205 ~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~~~~ 284 (339)
T 3fv3_A 205 NLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNTEYV 284 (339)
T ss_dssp EESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGGGGE
T ss_pred EECCEeecCCccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCceEEEecCCCCCCcEEEEECCCCEEEECHHHhe
Confidence 455544 3589999999999999887764 2111 1 1233556666664331
Q ss_pred -------c-------ceEeecchhhhhcCCeeeecccCC
Q 043220 96 -------S-------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 96 -------~-------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
| -..|||..||+.+-.+ .|+.++|
T Consensus 285 ~~~~~~~C~~~i~~~~~~ilG~~fl~~~y~v-fD~~~~~ 322 (339)
T 3fv3_A 285 YQNGDGTCLWGIQPSDDTILGDNFLRHAYLL-YNLDANT 322 (339)
T ss_dssp EECSSSCEEESEEECSSCEECHHHHTTEEEE-EETTTTE
T ss_pred eeCCCCeEEEEEEeCCcEEeChHHHhCEEEE-EECCCCE
Confidence 3 2369999999998774 8887654
No 16
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=81.83 E-value=3.3 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=27.3
Q ss_pred EEEEECCEEEEEEecCCCcccccCHHHHhh
Q 043220 44 VATKIRFHEVVILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 44 v~g~i~~~~v~~LIDSGAT~nFI~~~~a~r 73 (121)
+.+.|.|..+..--||||+...|.+.+...
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~ 39 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLED 39 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTT
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcc
Confidence 678899999999999999999999988765
No 17
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=77.42 E-value=1.8 Score=32.78 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=43.8
Q ss_pred EEEEecCCCcccccCHH----HHhhcCCC----------CCC--CCCeEEEecCCce-------------ecc-------
Q 043220 53 VVILISSGSTANFVSDK----VAALLPLP----------MMP--TKPFSVRIANGAH-------------LKS------- 96 (121)
Q Consensus 53 v~~LIDSGAT~nFI~~~----~a~rl~l~----------~~~--~~~~~V~va~G~~-------------l~~------- 96 (121)
..++||||++..++.+. +++.+.-. ... .+.+....+++.. ..|
T Consensus 213 ~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~~~C~~~i~~~ 292 (325)
T 2apr_A 213 FDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTISCDTSAFKPLVFSINGASFQVSPDSLVFEEFQGQCIAGFGYG 292 (325)
T ss_dssp EEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEEECSCGGGCCCEEEEETTEEEEECGGGGEEEEETTEEEESEEEE
T ss_pred ceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHEEEcCCCCeEEEEEEcC
Confidence 57899999999999999 66665321 111 2345555544411 124
Q ss_pred --ceEeecchhhhhcCCeeeecccCC
Q 043220 97 --PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 97 --~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
...|||-.||+.+-.+ .|+.++|
T Consensus 293 ~~~~~iLG~~fl~~~y~v-fD~~~~~ 317 (325)
T 2apr_A 293 NWGFAIIGDTFLKNNYVV-FNQGVPE 317 (325)
T ss_dssp SSSSEEECHHHHTTEEEE-EETTTTE
T ss_pred CCCCEEECHHHhcceEEE-EECCCCE
Confidence 2479999999998775 7876654
No 18
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=75.61 E-value=0.77 Score=32.00 Aligned_cols=23 Identities=4% Similarity=0.011 Sum_probs=18.4
Q ss_pred CEEEEEEecCCCcccccCHHHHh
Q 043220 50 FHEVVILISSGSTANFVSDKVAA 72 (121)
Q Consensus 50 ~~~v~~LIDSGAT~nFI~~~~a~ 72 (121)
|.++.|=|||||..|-|+..-.+
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~ 39 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNIT 39 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEE
T ss_pred CCEEEEEecCCcCcceecceeEE
Confidence 55688899999999988876554
No 19
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=71.76 E-value=4.2 Score=30.58 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=25.7
Q ss_pred cCeEEEEEEECCEEEEEEecCCCcccccCHH
Q 043220 39 RKFCVVATKIRFHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 39 ~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~ 69 (121)
.....+...|+.+++.+++||||+..++...
T Consensus 14 ~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~ 44 (323)
T 1bxo_A 14 DEEYITPVTIGGTTLNLNFDTGSADLWVFST 44 (323)
T ss_dssp GSCEEEEEEETTEEEEEEEETTCCCEEECBT
T ss_pred CCEEEEEEEECCEEEEEEEeCCCcceEEecC
Confidence 3456678888899999999999999998653
No 20
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=71.34 E-value=4.4 Score=30.55 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=25.7
Q ss_pred cCeEEEEEEECCEEEEEEecCCCcccccCHH
Q 043220 39 RKFCVVATKIRFHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 39 ~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~ 69 (121)
.....+...|+.+++.+++||||+..++...
T Consensus 14 ~~~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~ 44 (323)
T 1izd_A 14 DEEYITQVTVGDDTLGLDFDTGSADLWVFSS 44 (323)
T ss_dssp GCCEEEEEEETTEEEEEEEETTCCCEEECBT
T ss_pred CCEEEEEEEECCEEEEEEEcCCCcceEEecC
Confidence 3446678888899999999999999998653
No 21
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=70.47 E-value=4.6 Score=30.43 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=24.9
Q ss_pred cCeEEEEEEECCEEEEEEecCCCcccccCH
Q 043220 39 RKFCVVATKIRFHEVVILISSGSTANFVSD 68 (121)
Q Consensus 39 ~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~ 68 (121)
.....+...|+++++.+++||||+..++..
T Consensus 13 ~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 42 (325)
T 1ibq_A 13 DEEYLTPVTVGKSTLHLDFDTGSADLWVFS 42 (325)
T ss_dssp TSCEEEEEEEBTEEEEEEEETTCCCEEEEC
T ss_pred CCEEEEEEEECCEEEEEEEeCCCccceEee
Confidence 344567778889999999999999999864
No 22
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=68.50 E-value=5.8 Score=28.60 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=23.9
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccC
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVS 67 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~ 67 (121)
....+...|+ .+++.+++|+||+..++.
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (239)
T 1b5f_A 13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVP 42 (239)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEE
Confidence 3566788888 799999999999999985
No 23
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=68.46 E-value=8.1 Score=29.01 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=25.8
Q ss_pred cCeEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 39 RKFCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 39 ~~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
.....+...|+ ++++.+++|+||+..++...
T Consensus 14 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 14 DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIAST 46 (325)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCCEEEBT
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCCCEEEccC
Confidence 34567788888 89999999999999998653
No 24
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=68.38 E-value=5 Score=30.32 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=23.9
Q ss_pred eEEEEEEECCEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIRFHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+++++.+++||||+..++...
T Consensus 18 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~ 46 (330)
T 1yg9_A 18 QYAGITKIGNQNFLTVFDSTSCNVVVASQ 46 (330)
T ss_dssp TSEEEEEETTEEEEEEEETTCCCEEEECT
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecC
Confidence 34567778899999999999999998643
No 25
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=65.27 E-value=7.2 Score=29.41 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=24.6
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
...+...|+ .+++.+++||||+..++..
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGA 42 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECS
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecC
Confidence 567788888 8999999999999999864
No 26
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=64.35 E-value=7.6 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.5
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
....+...|+ .+++.++||+||+..++...
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHK 49 (361)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBT
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCCCeEECCC
Confidence 4567788888 89999999999999998654
No 27
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=64.30 E-value=7.4 Score=29.28 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.1
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
....+...|+ .+++.+++|+||+..++...
T Consensus 15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSS 46 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEECBT
T ss_pred CEEEEEEEECCCCeEEEEEECCCCCCeEEecC
Confidence 3466788888 89999999999999998754
No 28
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=63.88 E-value=7.6 Score=29.29 Aligned_cols=28 Identities=7% Similarity=0.247 Sum_probs=24.3
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccC
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVS 67 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~ 67 (121)
....+...|+ .+++.+++|+||+..++.
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 2qzx_A 12 ITYTADITVGSDNQKLNVIVDTGSSDLWIP 41 (342)
T ss_dssp SCEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred eEEEEEEEECCCCcEEEEEEeCCCCCeEEe
Confidence 4567788888 899999999999999985
No 29
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=63.88 E-value=7.7 Score=29.21 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=24.5
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+ .+++.+++|+||+..++...
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 3c9x_A 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFSS 46 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECBT
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCeEEecC
Confidence 456788888 89999999999999998653
No 30
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=63.33 E-value=5.9 Score=28.59 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=23.6
Q ss_pred EEECCEE-------EEEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRFHE-------VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~~-------v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..|+++. ..++||||.+..++...+++.+
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 4567765 3689999999999999988765
No 31
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=62.88 E-value=8.2 Score=29.06 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=24.7
Q ss_pred cCeEEEEEEEC--CEEEEEEecCCCcccccC
Q 043220 39 RKFCVVATKIR--FHEVVILISSGSTANFVS 67 (121)
Q Consensus 39 ~~~~~v~g~i~--~~~v~~LIDSGAT~nFI~ 67 (121)
.....+...|+ .+++.+++|+||+..++.
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (334)
T 1j71_A 11 GPSYAADIVVGSNQQKQTVVIDTGSSDLWVV 41 (334)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEe
Confidence 34567788888 899999999999999985
No 32
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=62.78 E-value=8.3 Score=28.92 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=24.4
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
....+...|+ .+++.+++||||+..++..
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 43 (329)
T 1dpj_A 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPS 43 (329)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCcCeEEec
Confidence 3566788888 7999999999999999864
No 33
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=62.74 E-value=8.3 Score=28.95 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=24.8
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
....+...|+ .+++.+++|+||+..++..
T Consensus 12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 42 (339)
T 3fv3_A 12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVVD 42 (339)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCCceEEec
Confidence 3577788888 7999999999999999964
No 34
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=61.46 E-value=8.7 Score=29.62 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=24.7
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+ .+++.++|||||+..++...
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 52 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAA 52 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECS
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEECC
Confidence 467788888 89999999999999998643
No 35
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=60.25 E-value=9.7 Score=28.53 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=24.0
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccC
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVS 67 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~ 67 (121)
....+...|+ .+++.+++|+||+..++.
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 3pvk_A 12 VTYAADITVGSNNQKLNVIVDTGSSDLWVP 41 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred cEEEEEEEEcCCCcEEEEEEECCCcceEEE
Confidence 3567788888 799999999999999984
No 36
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=59.43 E-value=10 Score=29.05 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=24.0
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
...+...|+ .+++.++|||||+..++..
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 43 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAG 43 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEec
Confidence 466788888 7999999999999999854
No 37
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=58.69 E-value=13 Score=28.72 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=25.5
Q ss_pred ccCeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 38 LRKFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 38 ~~~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
......+...|+ .+++.++|||||+..++.-
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 51 (403)
T 3aup_A 19 STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNC 51 (403)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEETTCSSEEEEC
T ss_pred CCceEEEEEECCCCCceeEEEEECCCCceeECC
Confidence 344567788888 7999999999999999864
No 38
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=58.49 E-value=11 Score=28.20 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=24.2
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
....+...|+ .+++.+++|+||+..++..
T Consensus 14 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 44 (323)
T 3cms_A 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPS 44 (323)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CEEEEEEEECCCCeEEEEEEeCCccceEEcC
Confidence 3566778887 6999999999999999864
No 39
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=58.13 E-value=11 Score=28.18 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.3
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
...+...|+ .+++.+++|+||+..++..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 42 (329)
T 1htr_B 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPS 42 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEec
Confidence 456677787 6999999999999999864
No 40
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=58.06 E-value=10 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.1
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
...+...|+ .+++.+++||||+..++..
T Consensus 12 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 41 (320)
T 4aa9_A 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPS 41 (320)
T ss_dssp CCEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEcC
Confidence 355677777 6999999999999999964
No 41
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=57.62 E-value=12 Score=28.03 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=24.5
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
....+...|+ .+++.+++|+||+..++...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 43 (324)
T 1am5_A 12 TEYYGVISIGTPPESFKVIFDTGSSNLWVSSS 43 (324)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEECBT
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEecC
Confidence 3566777887 59999999999999998653
No 42
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=57.19 E-value=13 Score=28.66 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=25.0
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
....+...|+ .+++.++|||||+..++..
T Consensus 28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 58 (402)
T 3vf3_A 28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGA 58 (402)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEcc
Confidence 4577888898 7999999999999999854
No 43
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=55.73 E-value=32 Score=25.58 Aligned_cols=73 Identities=10% Similarity=-0.035 Sum_probs=46.7
Q ss_pred EEECCEEE------EEEecCCCcccccCHHHHhhc----CC----------CCC---CCCCeEEEecCCcee--------
Q 043220 46 TKIRFHEV------VILISSGSTANFVSDKVAALL----PL----------PMM---PTKPFSVRIANGAHL-------- 94 (121)
Q Consensus 46 g~i~~~~v------~~LIDSGAT~nFI~~~~a~rl----~l----------~~~---~~~~~~V~va~G~~l-------- 94 (121)
..|+++.+ .++||||++..++.+...+.+ +. +.. ..+.+..... |..+
T Consensus 198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~-g~~~~i~~~~y~ 276 (323)
T 3cms_A 198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEIN-GKMYPLTPSAYT 276 (323)
T ss_dssp EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEEEECTTCTTTSCCEEEEET-TEEEEECHHHHE
T ss_pred EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcEEEECCCCccCceEEEEEC-CEEEEECHHHhc
Confidence 46677654 689999999999998887653 11 111 1233455542 3222
Q ss_pred -----cc----------ceEeecchhhhhcCCeeeecccCC
Q 043220 95 -----KS----------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 95 -----~~----------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
.| ...|||..||+.+-.+ .|+.++|
T Consensus 277 ~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~v-fD~~~~~ 316 (323)
T 3cms_A 277 SQDQGFCTSGFQSENHSQKWILGDVFIREYYSV-FDRANNL 316 (323)
T ss_dssp EEETTEEEESEEEC---CCEEECHHHHTTEEEE-EETTTTE
T ss_pred cCCCCEEEEEEEeCCCCCcEEECHHHhhceEEE-EECCCCE
Confidence 23 2479999999998774 7776653
No 44
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=55.55 E-value=14 Score=27.59 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=24.2
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
....+...|+ .+++.+++|+||+..++..
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 48 (341)
T 3k1w_A 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPS 48 (341)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCcceEEcc
Confidence 3466788888 5999999999999999964
No 45
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=55.23 E-value=11 Score=28.46 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=23.3
Q ss_pred EEEECC-EEE----EEEecCCCcccccCHHHHhhc
Q 043220 45 ATKIRF-HEV----VILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 45 ~g~i~~-~~v----~~LIDSGAT~nFI~~~~a~rl 74 (121)
...+++ +.+ .++||||.+..++.+...+++
T Consensus 194 ~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l 228 (340)
T 1wkr_A 194 SIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY 228 (340)
T ss_dssp EEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH
T ss_pred eEEECCCeEccCCCeEEEeCCcccccCCHHHHHHH
Confidence 346666 544 799999999999999887754
No 46
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=54.80 E-value=11 Score=28.57 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=23.6
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+ .+++.+++|+||+..++...
T Consensus 24 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~ 54 (351)
T 1tzs_A 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSV 54 (351)
T ss_dssp CCCEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEecC
Confidence 355677787 69999999999999998643
No 47
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.12 E-value=28 Score=20.55 Aligned_cols=44 Identities=14% Similarity=-0.088 Sum_probs=35.9
Q ss_pred ccccCeEEEEEEE-CCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 36 GQLRKFCVVATKI-RFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 36 ~~~~~~~~v~g~i-~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
...+.+|++..+. +++...+=++.-.|..-+-.+++.+.++|..
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 46 (87)
T 1wh3_A 2 SSGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKK 46 (87)
T ss_dssp CCCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTT
T ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChH
Confidence 4456788888886 6888888899989988899999999887753
No 48
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=52.93 E-value=14 Score=29.60 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=25.3
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
....+...|+ ++++.+++||||+..++...
T Consensus 138 ~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~ 169 (453)
T 2bju_A 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSV 169 (453)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred CEEEEEEEECCCCeEEEEEEECCCcceEEecc
Confidence 3567788888 89999999999999998654
No 49
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=52.73 E-value=14 Score=27.68 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=46.9
Q ss_pred EECCEE-----EEEEecCCCcccccCHHHHhhc----CCCC--------------CCCCCeEEEecCCcee---------
Q 043220 47 KIRFHE-----VVILISSGSTANFVSDKVAALL----PLPM--------------MPTKPFSVRIANGAHL--------- 94 (121)
Q Consensus 47 ~i~~~~-----v~~LIDSGAT~nFI~~~~a~rl----~l~~--------------~~~~~~~V~va~G~~l--------- 94 (121)
.++++. ..++||||++..++.+..++++ +... .....+.....+|..+
T Consensus 202 ~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~p~i~f~f~~g~~~~vp~~~~~~ 281 (342)
T 3pvk_A 202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAKISVPASEFAA 281 (342)
T ss_dssp EETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSCEEEEECSCCCSEEEEEESTTCEEEEEGGGGEE
T ss_pred EECCEEecCCCceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCCCceEEEEecCCCCceEEEECCCCEEEEcHHHhee
Confidence 556654 5799999999999999887764 2111 0112344555544321
Q ss_pred -----------cc-------ceEeecchhhhhcCCeeeecccCC
Q 043220 95 -----------KS-------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 95 -----------~~-------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
.| -..|||..||+.+-.+ .|+.++|
T Consensus 282 ~~~~~~g~~~~~C~~~i~~~~~~ilG~~fl~~~y~v-fD~~~~~ 324 (342)
T 3pvk_A 282 SLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIV-YDLDDNE 324 (342)
T ss_dssp C----------CEEESEEECTTCEECHHHHTTEEEE-EETTTTE
T ss_pred eccccCCCcCCeeEEEEeeCCCeEeCHHHHhcEEEE-EECCCCE
Confidence 23 2359999999998764 7877654
No 50
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=52.60 E-value=11 Score=29.32 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.5
Q ss_pred EEecCCCcccccCHHHHhh
Q 043220 55 ILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 55 ~LIDSGAT~nFI~~~~a~r 73 (121)
++||||.|..++.+.+.+.
T Consensus 262 aiiDSGTt~~~lp~~~~~~ 280 (403)
T 3aup_A 262 TMISTSTPHMVLQQSVYQA 280 (403)
T ss_dssp EEECSSCSSEEECHHHHHH
T ss_pred EEEECCCccEEeCHHHHHH
Confidence 8999999999999877654
No 51
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=52.35 E-value=15 Score=29.00 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
...+...|+ .+++.++|||||+..++..
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~ 104 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 104 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence 567788888 7999999999999999854
No 52
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=51.92 E-value=16 Score=28.47 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=24.1
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+ .+++.+++||||+..++...
T Consensus 62 ~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~ 92 (383)
T 2x0b_A 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS 92 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEecc
Confidence 466777887 69999999999999998643
No 53
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.21 E-value=41 Score=20.79 Aligned_cols=44 Identities=9% Similarity=-0.038 Sum_probs=36.5
Q ss_pred cccCeEEEEEEECCEEE-EEEecCCCcccccCHHHHhhcCCCCCC
Q 043220 37 QLRKFCVVATKIRFHEV-VILISSGSTANFVSDKVAALLPLPMMP 80 (121)
Q Consensus 37 ~~~~~~~v~g~i~~~~v-~~LIDSGAT~nFI~~~~a~rl~l~~~~ 80 (121)
+....|++..+.+++.. .+=++..+|..=+-.+++.+.+++...
T Consensus 3 ~~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~ 47 (96)
T 1wgg_A 3 SGSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPAR 47 (96)
T ss_dssp SCCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTT
T ss_pred CCCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 44567888888888888 588999999999999999999988654
No 54
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=50.63 E-value=15 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=24.7
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+ .+++.+++||||+..++...
T Consensus 138 ~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~ 168 (451)
T 3qvc_A 138 LSFGEAKLGDNGQKFNFLFHTASSNVWVPSI 168 (451)
T ss_dssp EEEEEEEETTTTEEEEEEEESSBCSEEEEBT
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEecC
Confidence 366788888 79999999999999999754
No 55
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=50.44 E-value=16 Score=27.52 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=22.4
Q ss_pred EEECCEE----EEEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRFHE----VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~~----v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..++++. ..++||||++..++.+...+++
T Consensus 202 i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l 234 (342)
T 2qzx_A 202 VNVRGRNVDANTNVLLDSGTTISYFTRSIVRNI 234 (342)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEecCCCcCEEEeCCCCCEEcCHHHHHHH
Confidence 3566654 3589999999999999887754
No 56
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=50.36 E-value=32 Score=21.68 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=39.6
Q ss_pred ccCeEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCCCCCeEEEecC
Q 043220 38 LRKFCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMPTKPFSVRIAN 90 (121)
Q Consensus 38 ~~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~~~~~~V~va~ 90 (121)
.++.+++++..+|.-..+-+++..+-.-+..++..++++. ...++.++--+
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~--~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFD--NEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCC--SSCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCC--CCCeEEEEEEC
Confidence 4567999999999888889999777777778888887754 45677776654
No 57
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=50.26 E-value=14 Score=27.45 Aligned_cols=73 Identities=10% Similarity=0.015 Sum_probs=46.5
Q ss_pred EEECCEE------EEEEecCCCcccccCHHHHhhc----CCC----------CC---CCCCeEEEecCCcee--------
Q 043220 46 TKIRFHE------VVILISSGSTANFVSDKVAALL----PLP----------MM---PTKPFSVRIANGAHL-------- 94 (121)
Q Consensus 46 g~i~~~~------v~~LIDSGAT~nFI~~~~a~rl----~l~----------~~---~~~~~~V~va~G~~l-------- 94 (121)
..++++. ..++||||++..++....++++ +.. .. ..+.+..... |..+
T Consensus 195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~f~-g~~~~l~~~~y~ 273 (320)
T 4aa9_A 195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSMPTVVFEIN-GRDYPLSPSAYT 273 (320)
T ss_dssp EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCEEECGGGGGGCCCEEEEET-TEEEEECHHHHE
T ss_pred EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcEEEeCCCCCcCceEEEEEC-CEEEEECHHHhc
Confidence 3566654 4689999999999998887654 211 00 1123444443 3222
Q ss_pred -----cc----------ceEeecchhhhhcCCeeeecccCC
Q 043220 95 -----KS----------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 95 -----~~----------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
.| ...|||..||+.+-.+ .|+.++|
T Consensus 274 ~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~v-fD~~~~~ 313 (320)
T 4aa9_A 274 SKDQGFCTSGFQGDNNSELWILGDVFIREYYSV-FDRANNR 313 (320)
T ss_dssp EEETTEEEESEEEETTCCCEEECHHHHTTEEEE-EETTTTE
T ss_pred cCCCCeEEEEEEcCCCCCcEEEChHHhcceEEE-EECCCCE
Confidence 13 2489999999998775 8887654
No 58
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=49.71 E-value=14 Score=27.78 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=46.3
Q ss_pred EEECCEE-----EEEEecCCCcccccCHHHHhhc----CC-------------CCC---CCCCeEEEecCCcee------
Q 043220 46 TKIRFHE-----VVILISSGSTANFVSDKVAALL----PL-------------PMM---PTKPFSVRIANGAHL------ 94 (121)
Q Consensus 46 g~i~~~~-----v~~LIDSGAT~nFI~~~~a~rl----~l-------------~~~---~~~~~~V~va~G~~l------ 94 (121)
..|+++. ..++||||+|..++.+..++++ +. +.. ..+.+.... +|..+
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g~~~~~~~~C~~~~~~p~i~f~f-gg~~~~l~~~~ 280 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVI-NGRNFNISSQY 280 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECSSCEEEEECGGGGGGSCCEEEEE-TTEEEEECHHH
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCCceEEEEEECCCccccCcEEEEE-CCEEEEECHHH
Confidence 4566665 3689999999999999887754 21 111 123344444 33222
Q ss_pred -------cc----------ceEeecchhhhhcCCeeeecccCC
Q 043220 95 -------KS----------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 95 -------~~----------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
.| ...|||..||+.+-.+ .|+.++|
T Consensus 281 y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~v-fD~~~~r 322 (330)
T 1yg9_A 281 YIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSE-FNWENKT 322 (330)
T ss_dssp HEEEETTEEEESEEEETTCSSEEECHHHHTTEEEE-EETTTTE
T ss_pred hcccCCCcEEEEEEeCCCCCeEEecHHHhhheEEE-EECCCCE
Confidence 23 2479999999998774 7776553
No 59
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=49.46 E-value=8.8 Score=29.37 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=22.0
Q ss_pred EEECCEEE----------EEEecCCCcccccCHHHHhh
Q 043220 46 TKIRFHEV----------VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 46 g~i~~~~v----------~~LIDSGAT~nFI~~~~a~r 73 (121)
..|+++.+ .++||||+|..++.+...+.
T Consensus 204 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~ 241 (383)
T 2ewy_A 204 LEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDA 241 (383)
T ss_dssp EEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHH
T ss_pred EEECCEEccccccccCCccEEEEcCCccccCCHHHHHH
Confidence 46677654 58999999999999877654
No 60
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=49.38 E-value=16 Score=27.59 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=23.0
Q ss_pred EEECCEE------EEEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRFHE------VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~~------v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..|+++. ..++||||++..++....++.+
T Consensus 210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l 244 (351)
T 1tzs_A 210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQL 244 (351)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCceEEcCCCceEEeccCCcceeCCHHHHHHH
Confidence 4667766 3689999999999998887654
No 61
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=48.64 E-value=10 Score=27.03 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=18.9
Q ss_pred EEEEecCCCcccccCHHHHhhc
Q 043220 53 VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 53 v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..++||||+|..++.+..++++
T Consensus 121 ~~aiiDSGTt~~~lP~~~~~~l 142 (241)
T 1lya_B 121 CEAIVDTGTSLMVGPVDEVREL 142 (241)
T ss_dssp EEEEECTTCSSEEECHHHHHHH
T ss_pred CEEEEECCCccccCCHHHHHHH
Confidence 4789999999999999887754
No 62
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=48.48 E-value=15 Score=27.89 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.2
Q ss_pred EEECCEEE------EEE-ecCCCcccccCHHHHhhc
Q 043220 46 TKIRFHEV------VIL-ISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~~v------~~L-IDSGAT~nFI~~~~a~rl 74 (121)
..|+++.+ .++ ||||++..++.+...+++
T Consensus 218 i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l 253 (361)
T 1mpp_A 218 VKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKV 253 (361)
T ss_dssp EEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHH
T ss_pred EEECCeeeccCCCCEEEEECCCCCceeCCHHHHHHH
Confidence 35666543 578 999999999998887654
No 63
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=48.07 E-value=19 Score=28.87 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=24.4
Q ss_pred CeEEEEEEEC--CEEEEEEecCCCcccccCH
Q 043220 40 KFCVVATKIR--FHEVVILISSGSTANFVSD 68 (121)
Q Consensus 40 ~~~~v~g~i~--~~~v~~LIDSGAT~nFI~~ 68 (121)
....+...|+ .+++.+++||||+..++..
T Consensus 52 ~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~ 82 (478)
T 1qdm_A 52 AQYFGEIGVGTPPQKFTVIFDTGSSNLWVPS 82 (478)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence 3466788888 7999999999999999854
No 64
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=47.85 E-value=18 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=22.4
Q ss_pred EECCEE------EEEEecCCCcccccCHHHHhhc
Q 043220 47 KIRFHE------VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 47 ~i~~~~------v~~LIDSGAT~nFI~~~~a~rl 74 (121)
.++++. ..++||||.+..++....++++
T Consensus 209 ~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i 242 (341)
T 3k1w_A 209 SVGSSTLLCEDGCLALVDTGASYISGSTSSIEKL 242 (341)
T ss_dssp EETTEEEECTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EECCEEeecCCCCEEEEECCCChhcCCHHHHHHH
Confidence 566654 4799999999999999887764
No 65
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=47.63 E-value=51 Score=24.44 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=22.9
Q ss_pred EEECCEEE-----EEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRFHEV-----VILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~~v-----~~LIDSGAT~nFI~~~~a~rl 74 (121)
..++++.+ .++||||++..++.+..++++
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 234 (329)
T 1dpj_A 201 IGLGDEYAELESHGAAIDTGTSLITLPSGLAEMI 234 (329)
T ss_dssp EEETTEEEECSSCEEEECTTCSCEEECHHHHHHH
T ss_pred EEECCeEecCCCccEEeeCCCCcEECCHHHHHHH
Confidence 45666554 589999999999999887754
No 66
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=47.54 E-value=26 Score=26.95 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=23.4
Q ss_pred EEECCE---EEEEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRFH---EVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~---~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..|+++ ...++||||++..++....++.+
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l 278 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKF 278 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHH
Confidence 667775 45799999999999999887653
No 67
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=47.30 E-value=12 Score=28.87 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=21.2
Q ss_pred EEECCEEEE----------EEecCCCcccccCHHHHh
Q 043220 46 TKIRFHEVV----------ILISSGSTANFVSDKVAA 72 (121)
Q Consensus 46 g~i~~~~v~----------~LIDSGAT~nFI~~~~a~ 72 (121)
..|+++.+. ++||||.|..++.+...+
T Consensus 213 i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~ 249 (381)
T 1t6e_X 213 IVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYR 249 (381)
T ss_dssp EEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHH
T ss_pred EEEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHH
Confidence 467776652 899999999999987655
No 68
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=47.26 E-value=7.9 Score=29.11 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcccccCHHHHhhc
Q 043220 51 HEVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 51 ~~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
....++||||.|..++.+..++++
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i 230 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAY 230 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHH
T ss_pred CCceEEEeCCCcceeCCHHHHHHH
Confidence 345789999999999999987765
No 69
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=46.90 E-value=21 Score=27.42 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.2
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+ .+++.+++||||+..++...
T Consensus 57 ~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~ 87 (370)
T 3psg_A 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV 87 (370)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred EEEEEEEEcCCCCEEEEEEeCCCCccEEECC
Confidence 466788888 49999999999999999753
No 70
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=46.48 E-value=13 Score=27.76 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcccccCHHHHhhc
Q 043220 51 HEVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 51 ~~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
....++||||.|..++.+..++++
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l 229 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQY 229 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHH
T ss_pred CCceEEEeCCCCceeCCHHHHHHH
Confidence 446799999999999999987654
No 71
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.23 E-value=24 Score=20.38 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=34.2
Q ss_pred cccCeEEEEEEE-CCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 37 QLRKFCVVATKI-RFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 37 ~~~~~~~v~g~i-~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
..+.+|++..+. +|+...+-++.-+|..-+-..++.+.+++..
T Consensus 3 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~ 46 (81)
T 2dzi_A 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVR 46 (81)
T ss_dssp CSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTT
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 456678887775 5777778889889999999999999988754
No 72
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=46.08 E-value=14 Score=27.62 Aligned_cols=73 Identities=7% Similarity=0.024 Sum_probs=45.9
Q ss_pred EEECCEE-----EEEEecCCCcccccCHHHHhhc----CC---------CCC---CCCCeEEEecCCcee----------
Q 043220 46 TKIRFHE-----VVILISSGSTANFVSDKVAALL----PL---------PMM---PTKPFSVRIANGAHL---------- 94 (121)
Q Consensus 46 g~i~~~~-----v~~LIDSGAT~nFI~~~~a~rl----~l---------~~~---~~~~~~V~va~G~~l---------- 94 (121)
..++++. ..++||||++..++.+...+.+ +. +.. ..+.+..... |..+
T Consensus 197 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~-g~~~~i~~~~y~~~ 275 (324)
T 1am5_A 197 ITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQSLPDITFTIN-GVKQPLPPSAYIEG 275 (324)
T ss_dssp EEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCEECCCCEECCTTSSSSSCCEEEEET-TEEEEECHHHHEEE
T ss_pred EEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCcccCCcEEEeCCCcccCCcEEEEEC-CEEEEECHHHhccc
Confidence 3566655 5799999999999988776543 21 111 1223455543 3222
Q ss_pred ---cc--------------ceEeecchhhhhcCCeeeecccCC
Q 043220 95 ---KS--------------PDVALDVKWSEQIGSIMRGWKKDE 120 (121)
Q Consensus 95 ---~~--------------~dvILG~~WL~~~~p~~idw~~~~ 120 (121)
.| ...|||..||+.+-.+ .|+.++|
T Consensus 276 ~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~v-fD~~~~~ 317 (324)
T 1am5_A 276 DQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTI-YDRTNNK 317 (324)
T ss_dssp SSSCEEECEEECCSCCSSSCEEEECHHHHHHEEEE-EETTTTE
T ss_pred CCCeEEEEEEECccCCCCCCcEEEChHHhccEEEE-EECCCCE
Confidence 23 1479999999998774 7877653
No 73
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=44.55 E-value=12 Score=28.91 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.0
Q ss_pred EEECCEEE----------EEEecCCCcccccCHHHHhh
Q 043220 46 TKIRFHEV----------VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 46 g~i~~~~v----------~~LIDSGAT~nFI~~~~a~r 73 (121)
..|+++.+ .++||||+|..++.+...+.
T Consensus 215 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~ 252 (395)
T 2qp8_A 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 252 (395)
T ss_dssp EEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHH
T ss_pred EEECCEEcccCccccCCceEEEEcCCCcEecCHHHHHH
Confidence 46777654 58999999999998877654
No 74
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=44.26 E-value=17 Score=22.18 Aligned_cols=43 Identities=12% Similarity=-0.092 Sum_probs=34.4
Q ss_pred cccCeEEEEEEECCEEEEE-EecCCCcccccCHHHHhhcCCCCC
Q 043220 37 QLRKFCVVATKIRFHEVVI-LISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 37 ~~~~~~~v~g~i~~~~v~~-LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
+....|++..+.+++...+ =++..+|..=+-..++.+.++|..
T Consensus 3 ~~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~ 46 (90)
T 1v5t_A 3 SGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPE 46 (90)
T ss_dssp CCCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTT
T ss_pred CCCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHH
Confidence 3445677888788888877 788889988899999999998754
No 75
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=43.65 E-value=31 Score=27.51 Aligned_cols=31 Identities=6% Similarity=0.127 Sum_probs=24.4
Q ss_pred EEEEECC---EEEEEEecCCCcccccCHHHHhhc
Q 043220 44 VATKIRF---HEVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 44 v~g~i~~---~~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
+...+++ ....++||||+|..++.+..+..+
T Consensus 320 l~I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i 353 (451)
T 3qvc_A 320 LDVHFGNVSSKKANVILDSATSVITVPTEFFNQF 353 (451)
T ss_dssp EEEEETTEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EEEEECCccCCCceEEEeCCCccccCCHHHHHHH
Confidence 3355665 456799999999999999988765
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.73 E-value=51 Score=20.22 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=35.0
Q ss_pred cCeEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCCC
Q 043220 39 RKFCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMMP 80 (121)
Q Consensus 39 ~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~~ 80 (121)
...|++..+.+++...+=|+.-+|..=+-.+++.+.++|...
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~ 56 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAM 56 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTT
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 346788888888888888999999999999999999987653
No 77
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=42.44 E-value=13 Score=28.64 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.1
Q ss_pred EEECCEEE----------EEEecCCCcccccCHHHHhh
Q 043220 46 TKIRFHEV----------VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 46 g~i~~~~v----------~~LIDSGAT~nFI~~~~a~r 73 (121)
..++++.+ .++||||+|..++.....+.
T Consensus 222 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~ 259 (402)
T 3vf3_A 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 259 (402)
T ss_dssp EEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHH
T ss_pred EEECCEEecccccccCCCeEEEECCCCcccCCHHHHHH
Confidence 46777764 48999999999998777664
No 78
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=42.07 E-value=11 Score=28.14 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=22.4
Q ss_pred EEECCEE-------EEEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRFHE-------VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~~-------v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..++++. ..++||||++..++.+...+.+
T Consensus 198 i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l 233 (329)
T 1htr_B 198 FLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSAL 233 (329)
T ss_dssp EEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHH
T ss_pred EEECCceeeecCCCceEEEecCCccEECCHHHHHHH
Confidence 4566654 4699999999999998877654
No 79
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=41.48 E-value=18 Score=27.14 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=19.9
Q ss_pred EEEEEecCCCcccccCHHHHhhc
Q 043220 52 EVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 52 ~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
...++||||.+..++.+..++++
T Consensus 212 ~~~aiiDSGTt~~~lP~~~~~~l 234 (329)
T 1oew_A 212 SIDGIADTGTTLLYLPATVVSAY 234 (329)
T ss_dssp EEEEEECTTCCSEEECHHHHHHH
T ss_pred CceEEEeCCCCCEECCHHHHHHH
Confidence 46799999999999999987654
No 80
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=40.17 E-value=9.7 Score=29.40 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=23.8
Q ss_pred eEEEEEEEC--CEEEEEEecCCCcccccCHH
Q 043220 41 FCVVATKIR--FHEVVILISSGSTANFVSDK 69 (121)
Q Consensus 41 ~~~v~g~i~--~~~v~~LIDSGAT~nFI~~~ 69 (121)
...+...|+ ++++.+++||||+..++...
T Consensus 63 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 93 (375)
T 1miq_A 63 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSK 93 (375)
T ss_dssp EEECCCEETTTTEECCEEEETTCCCEEEEBT
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEccC
Confidence 455677887 79999999999999998654
No 81
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=39.42 E-value=62 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=28.0
Q ss_pred eeecccccCeEEEEEEECC--EEEEEEecCCCcccccC
Q 043220 32 QVKCGQLRKFCVVATKIRF--HEVVILISSGSTANFVS 67 (121)
Q Consensus 32 Al~g~~~~~~~~v~g~i~~--~~v~~LIDSGAT~nFI~ 67 (121)
.+.+........+...|+. +++.+++|+||+..++.
T Consensus 12 pv~~d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~ 49 (413)
T 3vla_A 12 PVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVD 49 (413)
T ss_dssp EEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred EeeecCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcc
Confidence 3444445556778888886 99999999999988885
No 82
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=39.27 E-value=15 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEECCEEE----------EEEecCCCcccccCHHHHhh
Q 043220 46 TKIRFHEV----------VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 46 g~i~~~~v----------~~LIDSGAT~nFI~~~~a~r 73 (121)
..|+++.+ .++||||.|..++....++.
T Consensus 268 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~ 305 (455)
T 3lpj_A 268 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 305 (455)
T ss_dssp EEETTEECCCCGGGGGSSCEEECTTSSSEEEEHHHHHH
T ss_pred EEECCEEccccccccCCCeEEEECCCcceeCCHHHHHH
Confidence 46777765 48999999999998877664
No 83
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=38.39 E-value=24 Score=21.31 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=37.1
Q ss_pred ecccccCeEEEEEE-ECCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 34 KCGQLRKFCVVATK-IRFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 34 ~g~~~~~~~~v~g~-i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
.+...+..|++..+ .+|+.+.+-++...|..-+-..++.+.+++..
T Consensus 10 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (91)
T 3v6c_B 10 SGLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPD 56 (91)
T ss_dssp -CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 34456678888887 47788888899999999999999999998764
No 84
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=38.27 E-value=16 Score=27.36 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEecCCCcccccCHHHHhhc
Q 043220 52 EVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 52 ~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
...++||||+|..++.+..++++
T Consensus 208 ~~~aiiDSGTt~~~lP~~~~~~i 230 (325)
T 1ibq_A 208 GFSAIADTGTTLILLDDEIVSAY 230 (325)
T ss_dssp CEEEEECTTCCSEEECHHHHHHH
T ss_pred CceEEEeCCCCcEeCCHHHHHHH
Confidence 46799999999999999887764
No 85
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=36.41 E-value=18 Score=27.14 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEEecCCCcccccCHHHHhhc
Q 043220 52 EVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 52 ~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
...++||||.|..++.+..++.+
T Consensus 213 ~~~aiiDSGTt~~~lp~~~~~~i 235 (329)
T 3c9x_A 213 SIDGIADTGTTLLLLDDNVVDAY 235 (329)
T ss_dssp CEEEEECTTCCSEEECHHHHHHH
T ss_pred CceEEEECCCCcEeCCHHHHHHH
Confidence 45799999999999999987654
No 86
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=34.00 E-value=26 Score=27.43 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=14.9
Q ss_pred EEEecCCCcccccCHHHH
Q 043220 54 VILISSGSTANFVSDKVA 71 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a 71 (121)
.++||||.|..++.+.+.
T Consensus 267 ~aIiDSGTslt~lp~~~y 284 (413)
T 3vla_A 267 GTKISTINPYTVLETSIY 284 (413)
T ss_dssp CEEECSSSSSEEEEHHHH
T ss_pred CEEEECCCCcEEcCHHHH
Confidence 389999999999887654
No 87
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.31 E-value=52 Score=19.75 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=33.1
Q ss_pred ccccCeEEEEEEECCEEEEEEecCC-----CcccccCHHHHhhcCCCCC
Q 043220 36 GQLRKFCVVATKIRFHEVVILISSG-----STANFVSDKVAALLPLPMM 79 (121)
Q Consensus 36 ~~~~~~~~v~g~i~~~~v~~LIDSG-----AT~nFI~~~~a~rl~l~~~ 79 (121)
.+...+|++..+-.++...+=|+.. +|..=+-.+++.+.++|..
T Consensus 2 ~~~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~ 50 (92)
T 1wxv_A 2 SSGSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQS 50 (92)
T ss_dssp CCCCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTT
T ss_pred CCCCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHH
Confidence 3455678888877777777777774 7888888889999888754
No 88
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=33.24 E-value=49 Score=19.63 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=34.2
Q ss_pred cCeEEEEEEE-CCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 39 RKFCVVATKI-RFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 39 ~~~~~v~g~i-~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
+.+|++..+. +|+.+.+-|+.-.|..-+-.++..+.+++..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 44 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSE 44 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 5678888877 6788888899999999999999999888764
No 89
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=32.43 E-value=83 Score=21.13 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=30.5
Q ss_pred eEEEEEEECCEEEE--EEecCCCcccccC--HHHHhhcCCCCCC
Q 043220 41 FCVVATKIRFHEVV--ILISSGSTANFVS--DKVAALLPLPMMP 80 (121)
Q Consensus 41 ~~~v~g~i~~~~v~--~LIDSGAT~nFI~--~~~a~rl~l~~~~ 80 (121)
+|++.|.|+|+++. +-+=--..-||.+ .++|.++|++.+.
T Consensus 42 ~f~m~Gei~gk~f~E~F~L~rD~AfnFa~~~tR~a~~hGlp~~~ 85 (125)
T 2k4v_A 42 HFDMDGEIDGKPFSDSFELPRDTAFNFASDATRVAQKHGLHPKF 85 (125)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTGGGHHHHHHHHHHHTTCCGGG
T ss_pred EEEEEEEECCEeccceeeccHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 68899999999873 5555556668877 4678999998754
No 90
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=32.26 E-value=51 Score=19.45 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=34.9
Q ss_pred cccCeEEEEEEE-CCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 37 QLRKFCVVATKI-RFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 37 ~~~~~~~v~g~i-~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
+.+..|++..+. +|+...+-++.-.|..-+-.+++.+.++|..
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 56 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSE 56 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 456788888887 6788888899999999999999999988764
No 91
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.11 E-value=68 Score=19.32 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=34.8
Q ss_pred ccCeEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 38 LRKFCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 38 ~~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
.+..|++..+..++...+=|+...|..-+-.+++.+.+++..
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 55 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNAD 55 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTT
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 456788888777777788889999999999999999988764
No 92
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=29.72 E-value=13 Score=30.03 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=36.0
Q ss_pred CCcccccCHHHHhhcCCCCCCCCCeEEEecCCceecc------ceEeecchhh
Q 043220 60 GSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLKS------PDVALDVKWS 106 (121)
Q Consensus 60 GAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l~~------~dvILG~~WL 106 (121)
|-+|-|+..++|+.++.+....+-+.+.++||..+.. .|.-.|+.=|
T Consensus 189 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSi~Ai~~GksVDTsMG~TpL 241 (415)
T 2e1z_A 189 GTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAVRNGQSVDTSMGMTPL 241 (415)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCEEEEEEESSSEEEEEEETTEEEEESCCSSTT
T ss_pred hhhHHHHHHHHHHHhCCChhhcCEEEEEeCCchhhhheeCCEEEecCCCCCCC
Confidence 4467788888999888888777788899999987753 7777776443
No 93
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=29.37 E-value=50 Score=26.42 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=22.9
Q ss_pred EEECCEE-------EEEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRFHE-------VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~~~-------v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..|+++. ..++||||.|..++....++.+
T Consensus 240 i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i 275 (478)
T 1qdm_A 240 VLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEI 275 (478)
T ss_dssp EEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHH
T ss_pred EEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHH
Confidence 3566654 4689999999999999887754
No 94
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=29.04 E-value=10 Score=30.41 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=34.3
Q ss_pred CCcccccCHHHHhhcCCCCCCCCCeEEEecCCceecc------ceEeecchhh
Q 043220 60 GSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLKS------PDVALDVKWS 106 (121)
Q Consensus 60 GAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l~~------~dvILG~~WL 106 (121)
|-+|-|+..++|+.+|.+....+-+.+.++||..+.. .|.--|+.=|
T Consensus 180 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSi~Ai~~GksVDTsMG~TpL 232 (403)
T 2iir_A 180 GTSHRYVSKRAAEILGKKLEELKIITCHIGNGASVAAVKYGKCVDTSMGFTPL 232 (403)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEEEEEETTEEEEESCCSSTT
T ss_pred hhhHHHHHHHHHHHhCCChHHCCEEEEEeCCCeeeeeeECCEEEEeCCCCCCC
Confidence 3466777788888888777767778889999987753 6766666443
No 95
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=28.35 E-value=37 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=22.8
Q ss_pred EEECC---EEEEEEecCCCcccccCHHHHhhc
Q 043220 46 TKIRF---HEVVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 46 g~i~~---~~v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..|++ ....++||||+|..++.+..++.+
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l 354 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 354 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHH
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHH
Confidence 44555 235789999999999999988765
No 96
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=27.92 E-value=32 Score=21.81 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=33.5
Q ss_pred cCeEEEEEE-ECCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 39 RKFCVVATK-IRFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 39 ~~~~~v~g~-i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
+..|++..+ .+|+.+.+-|+.-+|..-+-.+++.+.++|..
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 74 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 74 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChH
Confidence 346888877 47788888899999999999999999988753
No 97
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=27.36 E-value=17 Score=26.74 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.3
Q ss_pred EEEecCCCcccccCHHHHhh
Q 043220 54 VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a~r 73 (121)
.+-+|||||..++-+.++++
T Consensus 21 vIgLGsGST~~~~i~~L~~~ 40 (225)
T 3l7o_A 21 IVGLGTGSTAYYFVEEVGRR 40 (225)
T ss_dssp EEEECCSTTHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHh
Confidence 46789999999999888876
No 98
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=27.05 E-value=22 Score=25.90 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=7.8
Q ss_pred EEEecCCCcccccCHHHHhh
Q 043220 54 VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a~r 73 (121)
.+.+|||||..++-+.++++
T Consensus 23 ~I~LdsGST~~~la~~L~~~ 42 (219)
T 1o8b_A 23 IVGVGTGSTAAHFIDALGTM 42 (219)
T ss_dssp CEEECCSCC-----------
T ss_pred EEEEcChHHHHHHHHHHhcc
Confidence 46899999999999999865
No 99
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=26.59 E-value=10 Score=30.42 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCcccccCHHHHhhcCCCCCCCCCeEEEecCCceecc------ceEeecchhh
Q 043220 60 GSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLKS------PDVALDVKWS 106 (121)
Q Consensus 60 GAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l~~------~dvILG~~WL 106 (121)
|-+|-|+..++|+.+|.+....+-+.+.++||..+.. .|.-.|+.=|
T Consensus 181 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSi~Ai~~GksVDTsMG~Tpl 233 (408)
T 1g99_A 181 GTSHKYVAERAALMLGKPAEETKIITCHLGNGSSITAVEGGKSVETSMGFTPL 233 (408)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGCEEEEEEESSSEEEEEEETTEEEEESCCSSTT
T ss_pred hhhHHHHHHHHHHHhCCChhhCCEEEEEeCCccchhheECCEEEEeCCCCCCC
Confidence 3466677778888888777666778889999987753 7776666443
No 100
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=26.01 E-value=32 Score=26.38 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=18.7
Q ss_pred EEEEecCCCcccccCHHHHhhc
Q 043220 53 VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 53 v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..++||||.+..++....++.+
T Consensus 254 ~~aiiDTGTs~~~lP~~~~~~i 275 (370)
T 3psg_A 254 CQAIVDTGTSLLTGPTSAIANI 275 (370)
T ss_dssp EEEEECTTCCSEEEEHHHHHHH
T ss_pred ceEEEcCCCCcEECCHHHHHHH
Confidence 4689999999999998887654
No 101
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=24.81 E-value=27 Score=25.95 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.5
Q ss_pred EEEecCCCcccccCHHHHhh
Q 043220 54 VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a~r 73 (121)
.+.||||||..++-+.++++
T Consensus 30 ~IgLgsGST~~~~~~~L~~~ 49 (244)
T 2f8m_A 30 TIGLGTGSTVFYVLERIDNL 49 (244)
T ss_dssp EEEECCSTTTHHHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhhh
Confidence 36799999999999999866
No 102
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=24.75 E-value=27 Score=26.21 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=17.8
Q ss_pred EEEecCCCcccccCHHHHhh
Q 043220 54 VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a~r 73 (121)
.+.||||||..++-+.++++
T Consensus 41 ~IgLgsGST~~~~a~~L~~~ 60 (264)
T 1xtz_A 41 IIGIGSGSTVVYVAERIGQY 60 (264)
T ss_dssp EEEECCCSSTHHHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhHh
Confidence 46799999999999999876
No 103
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=24.16 E-value=42 Score=25.99 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.7
Q ss_pred EEEEecCCCcccccCHHHHhhc
Q 043220 53 VVILISSGSTANFVSDKVAALL 74 (121)
Q Consensus 53 v~~LIDSGAT~nFI~~~~a~rl 74 (121)
..++||||.+..++....++.+
T Consensus 264 ~~aiiDTGTs~~~lP~~~~~~i 285 (383)
T 2x0b_A 264 CLALVDTGASYISGSTSSIEKL 285 (383)
T ss_dssp EEEEECTTCSSEEECHHHHHHH
T ss_pred cEEEEcCCCceEEcCHHHHHHH
Confidence 5799999999999998877654
No 104
>4h0p_A Acetate kinase; askha (acetate and sugar kinas actin) superfamily, ribonuclease H-like fold, transferase; 1.89A {Cryptococcus neoformans}
Probab=23.99 E-value=16 Score=29.63 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=36.8
Q ss_pred CCcccccCHHHHhhcCCCCCCCCCeEEEecCCceecc------ceEeecchhh
Q 043220 60 GSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLKS------PDVALDVKWS 106 (121)
Q Consensus 60 GAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l~~------~dvILG~~WL 106 (121)
|-+|-|+..++|+.++.+....+-+.+.++||..+.. .|.-.|+.=|
T Consensus 193 GlS~~yva~~~a~~lgk~~~~~~lIv~HLGnGaSv~Ai~~GksVDTsMGltPl 245 (438)
T 4h0p_A 193 GLSYASIVQSLAEHLKKPSDQINVVVAHLGSGSSSCCIKNGKSIDTSMGLTPL 245 (438)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCEEEEECSSSCEEEEEETTEEEEESCCSSTT
T ss_pred HHhHHHHHHHHHHHhCCChhhccEEEEEeCCCcEEEEEECCEEEEeCCCCCCC
Confidence 4478899999999999888777888899999987753 6777776543
No 105
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=22.16 E-value=93 Score=18.03 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=33.9
Q ss_pred ccCeEEEEEEE-CCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 38 LRKFCVVATKI-RFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 38 ~~~~~~v~g~i-~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
...+|++..+. +|+.+.+-|+.-.|..-+-..++.+.++|..
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 51 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 51 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHH
Confidence 34567777774 7788888899999999999999999998754
No 106
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.97 E-value=1.3e+02 Score=17.55 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=33.1
Q ss_pred cccCeEEEEEEE-CC-EEEEEE-ecCCCcccccCHHHHhhcCCCCC
Q 043220 37 QLRKFCVVATKI-RF-HEVVIL-ISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 37 ~~~~~~~v~g~i-~~-~~v~~L-IDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
.....|++..+. +| +...+- ++.-.|..-+-.+++.+.++|..
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~ 48 (89)
T 1wy8_A 3 SGSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPE 48 (89)
T ss_dssp CCSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTT
T ss_pred CCCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChh
Confidence 455678888876 46 466663 89889999999999999988754
No 107
>4b0m_A F1 capsule-anchoring protein; protein transport, chaperone-usher pathway, PILI assembly; 1.80A {Yersinia pestis} PDB: 4b0e_A
Probab=21.77 E-value=1.6e+02 Score=19.34 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=36.3
Q ss_pred eEEEeeeecccccCeEEEEEEECCEEE-----EEEe--cCCCcc--cccCHHHHhhcCCCCCC
Q 043220 27 SRSLFQVKCGQLRKFCVVATKIRFHEV-----VILI--SSGSTA--NFVSDKVAALLPLPMMP 80 (121)
Q Consensus 27 ~isl~Al~g~~~~~~~~v~g~i~~~~v-----~~LI--DSGAT~--nFI~~~~a~rl~l~~~~ 80 (121)
-+|.-. .|...|++.++...||++.+ .+.. +.|... =.+++++.+++|+....
T Consensus 18 DLS~F~-~g~~~PG~Y~vdI~vN~~~~~~~~i~F~~~~~~~~~~l~pClt~~~L~~~Gv~~~~ 79 (136)
T 4b0m_A 18 DVSLFN-QGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDK 79 (136)
T ss_dssp CCHHHH-TTCCCCEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEECCCHHHHHHTTBCGGG
T ss_pred cHHHhc-CCCCCCcEEEEEEEECCccccceEEEEEEecCCCCceEEEecCHHHHHHcCCChHH
Confidence 344443 36677999999999999754 2222 344332 37999999999987653
No 108
>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A
Probab=21.41 E-value=21 Score=28.68 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=31.7
Q ss_pred CCcccccCHHHHhhcCCCCCCCCCeEEEecCCceecc------ceEeecc
Q 043220 60 GSTANFVSDKVAALLPLPMMPTKPFSVRIANGAHLKS------PDVALDV 103 (121)
Q Consensus 60 GAT~nFI~~~~a~rl~l~~~~~~~~~V~va~G~~l~~------~dvILG~ 103 (121)
|-+|-||..++|+.++.+....+-+.+.++||..+.. .|.=.|+
T Consensus 198 GlS~~yVa~r~a~~lgk~~~~~~lIv~HLGnGaSi~Ai~~GksvDTsMG~ 247 (415)
T 3sk3_A 198 GTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGL 247 (415)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCEEEEECSSSCEEEEEETTEEEEECCCC
T ss_pred cchHHHHHHHHHHHhCCChHHCcEEEEEeCCCceEEEEECCEEEEeCCCc
Confidence 3456677777888888777777778899999987753 5555454
No 109
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=21.14 E-value=53 Score=24.28 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.5
Q ss_pred EEEecCCCcccccCHHHHhhcCCCCC
Q 043220 54 VILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
...+|||.+..=+..++|+++|+|.-
T Consensus 129 L~fvDS~Ts~~S~a~~~A~~~gvp~~ 154 (245)
T 2nly_A 129 AFIIDSGTSPHSLIPQLAEELEVPYA 154 (245)
T ss_dssp CEEEECCCCSSCSHHHHHHHTTCCEE
T ss_pred CEEEcCCCCcccHHHHHHHHcCCCeE
Confidence 67899999999999999999999863
No 110
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=20.54 E-value=1.3e+02 Score=20.54 Aligned_cols=25 Identities=8% Similarity=0.091 Sum_probs=20.2
Q ss_pred cCeEEEEEEECCEEEEEEecCCCcc
Q 043220 39 RKFCVVATKIRFHEVVILISSGSTA 63 (121)
Q Consensus 39 ~~~~~v~g~i~~~~v~~LIDSGAT~ 63 (121)
...|.++..|||+.+.+-++.|.|.
T Consensus 7 ~~~m~i~~~ing~~~~~~v~~~~tl 31 (168)
T 1t3q_A 7 SQLMRISATINGKPRVFYVEPRMHL 31 (168)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBH
T ss_pred CCcceEEEEECCEEEEEecCCCCcH
Confidence 3567899999999999878887664
No 111
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=20.51 E-value=21 Score=26.19 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.6
Q ss_pred EEEecCCCcccccCHHHHhh
Q 043220 54 VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a~r 73 (121)
.+.+|||||..++-+.++++
T Consensus 23 ~I~LdsGST~~~~a~~L~~~ 42 (229)
T 1lk5_A 23 VIGLGTGSTTAYFIKLLGEK 42 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhhh
Confidence 46799999999999999866
No 112
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=20.39 E-value=21 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.5
Q ss_pred EEEecCCCcccccCHHHHhh
Q 043220 54 VILISSGSTANFVSDKVAAL 73 (121)
Q Consensus 54 ~~LIDSGAT~nFI~~~~a~r 73 (121)
.+.+|||||..++-+.++++
T Consensus 25 ~I~LgsGST~~~~~~~L~~~ 44 (227)
T 1uj6_A 25 VVGLGTGSTARYAVLELARR 44 (227)
T ss_dssp EEEECCSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHhhh
Confidence 46799999999999999866
No 113
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.01 E-value=1.5e+02 Score=17.51 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=35.1
Q ss_pred cCeEEEEEEECCEEEEEEecCCCcccccCHHHHhhcCCCCC
Q 043220 39 RKFCVVATKIRFHEVVILISSGSTANFVSDKVAALLPLPMM 79 (121)
Q Consensus 39 ~~~~~v~g~i~~~~v~~LIDSGAT~nFI~~~~a~rl~l~~~ 79 (121)
..++++....+|+...+=++..+|..-+-.+++.+.++|..
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 50 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPR 50 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTT
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChH
Confidence 45778888889999988999999999999999999998753
Done!