BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043222
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J2F|A Chain A, X-Ray Crystal Structure Of Irf-3 And Its Functional
Implications
pdb|1J2F|B Chain B, X-Ray Crystal Structure Of Irf-3 And Its Functional
Implications
Length = 258
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 41/201 (20%)
Query: 94 SMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTM-CYSYYALQPF-- 150
S NP+ LG + + L LV G W + QT+ C L
Sbjct: 5 SSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEV 64
Query: 151 --YSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCS 208
+LP W + + P+P M+ + + S ++H+L L GG + W +
Sbjct: 65 GDRTLPGWPVTL-------------PDP-GMSLTDRGVMSYVRHVLSCL--GGGLALWRA 108
Query: 209 KQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKF 268
Q +W + C+TY + L + P +V D++ + LG F
Sbjct: 109 GQWLWAQRLGHCHTYWAVSEEL----LPNSGHGPDGEVPKDKEGGVFDLGPF-------- 156
Query: 269 LAPLVTLVMLNMIAFTGGIAR 289
++++I FT G R
Sbjct: 157 --------IVDLITFTEGSGR 169
>pdb|1QWT|A Chain A, Auto-inhibitory Interferon Regulation Factor-3 (irf3)
Transactivation Domain
pdb|1QWT|B Chain B, Auto-inhibitory Interferon Regulation Factor-3 (irf3)
Transactivation Domain
Length = 255
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 41/197 (20%)
Query: 98 NPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTM-CYSYYALQPF----YS 152
NP+ LG + + L LV G W + QT+ C L +
Sbjct: 6 NPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRT 65
Query: 153 LPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRI 212
LP W + + P+P M+ + + S ++H+L L GG + W + Q +
Sbjct: 66 LPGWPVTL-------------PDP-GMSLTDRGVMSYVRHVLSCL--GGGLALWRAGQWL 109
Query: 213 WMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPL 272
W + C+TY + L + P +V D++ + LG F
Sbjct: 110 WAQRLGHCHTYWAVSEEL----LPNSGHGPDGEVPKDKEGGVFDLGPF------------ 153
Query: 273 VTLVMLNMIAFTGGIAR 289
++++I FT G R
Sbjct: 154 ----IVDLITFTEGSGR 166
>pdb|3A77|A Chain A, The Crystal Structure Of Phosphorylated Irf-3
pdb|3A77|B Chain B, The Crystal Structure Of Phosphorylated Irf-3
pdb|3A77|C Chain C, The Crystal Structure Of Phosphorylated Irf-3
pdb|3A77|D Chain D, The Crystal Structure Of Phosphorylated Irf-3
Length = 242
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 23/116 (19%)
Query: 174 PNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCF 233
P+P M+ + + S ++H+L L GG + W + Q +W + C+TY + L
Sbjct: 61 PDP-GMSLTDRGVMSYVRHVLSCL--GGGLALWRAGQWLWAQRLGHCHTYWAVSEEL--- 114
Query: 234 GMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIAR 289
+ P +V D++ + LG F ++++I FT G R
Sbjct: 115 -LPNSGHGPDGEVPKDKEGGVFDLGPF----------------IVDLITFTEGSGR 153
>pdb|1ZOQ|A Chain A, Irf3-Cbp Complex
pdb|1ZOQ|B Chain B, Irf3-Cbp Complex
Length = 191
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 23/116 (19%)
Query: 174 PNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCF 233
P+P M+ + + S ++H+L L GG + W + Q +W + C+TY + L
Sbjct: 51 PDP-GMSLTDRGVMSYVRHVLSCL--GGGLALWRAGQWLWAQRLGHCHTYWAVSEEL--- 104
Query: 234 GMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIAR 289
+ P +V D++ + LG F ++++I FT G R
Sbjct: 105 -LPNSGHGPDGEVPKDKEGGVFDLGPF----------------IVDLITFTEGSGR 143
>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
pdb|2PZ0|B Chain B, Crystal Structure Of Glycerophosphodiester
Phosphodiesterase (Gdpd) From T. Tengcongensis
Length = 252
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 119 GTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHL---CLINGISLYP 174
G + CGL+E P + Y+L PFY I+P L C NG+ L+P
Sbjct: 170 GLLYQCGLVE------PWHMALRMEAYSLHPFY------FNIIPELVEGCKKNGVKLFP 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,846,257
Number of Sequences: 62578
Number of extensions: 375114
Number of successful extensions: 785
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 5
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)