Query 043222
Match_columns 355
No_of_seqs 228 out of 663
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 99.8 1.7E-20 5.8E-25 201.5 19.1 214 91-326 354-576 (802)
2 1dsk_A VPR protein; viral pept 16.3 19 0.00065 22.1 -0.9 8 16-23 17-24 (28)
3 4a0t_A Tail fiber protein; vir 15.2 41 0.0014 29.2 0.5 42 75-124 113-168 (227)
4 3rlb_A THIT; S-component, ECF 14.0 3.8E+02 0.013 23.3 6.5 62 269-331 51-118 (192)
5 2fy7_A Beta-1,4-galactosyltran 10.8 81 0.0028 29.0 1.2 25 107-131 240-264 (287)
6 2lr2_A Immunoglobulin G-bindin 10.6 2.2E+02 0.0075 21.5 3.3 33 44-76 41-82 (88)
7 3ga3_A Interferon-induced heli 9.9 28 0.00096 29.0 -2.1 48 73-124 65-113 (133)
8 1q01_A Lebetin 2 isoform alpha 7.6 1.1E+02 0.0039 19.9 0.5 11 12-22 9-19 (38)
9 3n56_C Natriuretic peptides B; 6.6 1.3E+02 0.0044 18.9 0.4 10 13-22 6-15 (32)
10 2k1a_A Integrin alpha-IIB; sin 5.9 6.3E+02 0.022 16.5 3.6 21 326-346 5-25 (42)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.85 E-value=1.7e-20 Score=201.54 Aligned_cols=214 Identities=15% Similarity=0.248 Sum_probs=150.7
Q ss_pred CceeeecCCCCcccccccCCChhhhhhhhhhhccchhHHHh-------cCCChhHHHHhhhhcccccccHHHHHHHHHHH
Q 043222 91 RWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAF-------ASMPLLQTMCYSYYALQPFYSLPSWCLAIVPH 163 (355)
Q Consensus 91 GWrSvY~~p~~~AF~G~AP~~l~~~l~Qr~RWa~G~lqI~~-------~~L~~~QrL~Y~~~~~y~~~sip~l~y~l~P~ 163 (355)
|||++|++ + +...+.+|+++.+.++||.||++|.+|+++ +++++.||++|+....+++.+++.++|+++|+
T Consensus 354 G~ri~~~~-~-~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~~~pl~~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~ 431 (802)
T 4hg6_A 354 GWKSLYID-R-AMIAGLQPETFASFIQQRGRWATGMMQMLLLKNPLFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPL 431 (802)
T ss_dssp TCCEEECC-C-CCEEECCCCSHHHHHHHHHHHHHHHHHHHHHSCTTSCSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCeEEEec-C-CEEEecCCCCHHHHHHHHHHHHccHHHHHHHhCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999984 3 455799999999999999999999999998 67999999999999999999999999999999
Q ss_pred HHHHcCCccccCchHHHHHHHHHHHHHHH--HHHHHHcCCccccccccceEEeeehhhHHHHHHHHHHHHHHcCCCCcee
Q 043222 164 LCLINGISLYPNPWFMNFSCIFLCSLLKH--LLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFS 241 (355)
Q Consensus 164 l~Ll~g~~i~p~~~~~~~~~lf~~~~~~~--lle~~~~G~s~~~ww~~qr~w~i~~~sa~l~a~~~~llk~lg~~~~~F~ 241 (355)
+++++++++++.....++.+ ++.+.+.. +......+.. ..||. + +..+...++.+..++..++++++.+|+
T Consensus 432 ~~ll~~~~~~~~~~~~~~~~-~lp~~l~~~~~~~~~~~~~r-~~~~~-~----l~~~~~~~~~~~a~l~~l~~~~~~~f~ 504 (802)
T 4hg6_A 432 IYLFFGIEIFVATFEEVLAY-MPGYLAVSFLVQNALFARQR-WPLVS-E----VYEVAQAPYLARAIVTTLLRPRSARFA 504 (802)
T ss_dssp HHHHHCCCCSCCCHHHHHHH-HHHHHHHHHHHHHHHHTTTS-CTTHH-H----HHHHHHHHHHHHHHHHHHHSTTCCCCC
T ss_pred HHHHHhHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHhcCcH-HHHHH-H----HHHHHHHHHHHHHHHHHHhCCCCCcce
Confidence 99999998887221111111 11111111 1112222221 12332 2 222223333444455556788999999
Q ss_pred eccCCCChhHHhhhhcccceecccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043222 242 PTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMA 321 (355)
Q Consensus 242 VT~K~~~~~~~~~y~~~~f~f~~~s~l~iP~~~l~~lnl~aiv~gi~r~~~~~~~~~~~~~~~~~~w~v~~l~p~~~gl~ 321 (355)
||+|+.+.+.. + .+++..|+++++++|++++++|+++...... .....++.++|.++|++.+..++.
T Consensus 505 VT~Kg~~~~~~---------~--~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 505 VTAKDETLSEN---------Y--ISPIYRPLLFTFLLCLSGVLATLVRWVAFPG--DRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp CCCCCCCCSSC---------C--BCTTCHHHHHHHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCcccccc---------c--hhhHHHHHHHHHHHHHHHHHHHHHHHhccCC--ccchhhhhhHHHHHHHHHHHHHHH
Confidence 99998764421 1 1357789999999999999999999875432 233456777888888888877776
Q ss_pred hhhcC
Q 043222 322 WRKDK 326 (355)
Q Consensus 322 ~r~~k 326 (355)
...++
T Consensus 572 ~~~~~ 576 (802)
T 4hg6_A 572 AVAEK 576 (802)
T ss_dssp TTBCC
T ss_pred HHhcC
Confidence 54443
No 2
>1dsk_A VPR protein; viral peptide, polypeptide; NMR {Human immunodeficiency virus 1} SCOP: j.11.1.1
Probab=16.29 E-value=19 Score=22.09 Aligned_cols=8 Identities=13% Similarity=-0.135 Sum_probs=6.5
Q ss_pred Ccceecee
Q 043222 16 CFYMKREA 23 (355)
Q Consensus 16 Gc~~rR~a 23 (355)
||.|+|.-
T Consensus 17 GC~Hsrig 24 (28)
T 1dsk_A 17 GCRHSRIG 24 (28)
T ss_dssp HHTTTTGG
T ss_pred cccccccc
Confidence 89999864
No 3
>4a0t_A Tail fiber protein; viral protein, caudovirales, podoviridae, beta-helix, beta-S; HET: 1PE; 1.90A {Enterobacteria phage T7} PDB: 4a0u_A
Probab=15.22 E-value=41 Score=29.24 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=31.2
Q ss_pred hhcceecCCccccccC--------------CceeeecCCCCcccccccCCChhhhhhhhhhhcc
Q 043222 75 LASYNYEKNTLWRKQA--------------RWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNC 124 (355)
Q Consensus 75 vasC~YE~~T~WG~ev--------------GWrSvY~~p~~~AF~G~AP~~l~~~l~Qr~RWa~ 124 (355)
||.=+--.+|+||.+- ||.-++ .|.|--..+..|.|-.||-.
T Consensus 113 vA~DGNI~G~KWG~~WLD~YLr~tYV~Ks~gWteVW--------~gSaGGgvSv~lsQDvR~Rt 168 (227)
T 4a0t_A 113 VATDGNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVW--------SGSAGGGVSVTVSQDLRFRN 168 (227)
T ss_dssp ECTTSCEECGGGTTSBHHHHHHHHBCBCCCCEEEEE--------ESCCCTTCEEECSSCCTTCE
T ss_pred EeccCCEecccccchhhHHHhhhccccccccHHHhh--------cccCCCceeecccccceeeE
Confidence 4444555689999976 776665 36777788889999999964
No 4
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=13.96 E-value=3.8e+02 Score=23.25 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 043222 269 LAPLVTLVMLN------MIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPA 331 (355)
Q Consensus 269 ~iP~~~l~~ln------l~aiv~gi~r~~~~~~~~~~~~~~~~~~w~v~~l~p~~~gl~~r~~k~~iP~ 331 (355)
.+|.+.....- +++++.|+..++.++....-..|.++..-+...+..+ .|++.+|.|++.+.
T Consensus 51 ~iPiii~a~~~Gp~~G~~~g~i~gll~~i~g~~~~~~p~q~lldy~laf~~~Gl-aG~f~~~~~~~~~~ 118 (192)
T 3rlb_A 51 CIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGI-AGLFRQKTAPLKLA 118 (192)
T ss_dssp GHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTCSCCSSHHHHHHHHTHHHHHGGG-GGGGCCCSSSCCHH
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHH-HHhheeccccccHH
Confidence 45655444332 5556666666665332111123444333333333322 37776666666443
No 5
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=10.82 E-value=81 Score=28.98 Aligned_cols=25 Identities=4% Similarity=-0.086 Sum_probs=20.2
Q ss_pred ccCCChhhhhhhhhhhccchhHHHh
Q 043222 107 SAASSLNDTLVQGTRWNCGLLENAF 131 (355)
Q Consensus 107 ~AP~~l~~~l~Qr~RWa~G~lqI~~ 131 (355)
..|+.+.....|++||+++-++-+.
T Consensus 240 ~n~~~~~~l~~~~~~~~~~Gl~~~~ 264 (287)
T 2fy7_A 240 PNPQRFDRIAHTKETMLSDGLNSLT 264 (287)
T ss_dssp -CCCCCCCHHHHHHHTTTSSGGGCC
T ss_pred CCHHHHHHHhhcccEEcCCCcccCc
Confidence 4688899999999999998776544
No 6
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=10.62 E-value=2.2e+02 Score=21.49 Aligned_cols=33 Identities=33% Similarity=0.277 Sum_probs=19.5
Q ss_pred hHHHHHHhhhcc-----C----CccCCCCCchHHHHHHhhhh
Q 043222 44 NELIISLQRSNQ-----H----KTIDNGILSSTLQQEAKFLA 76 (355)
Q Consensus 44 ~~~~~S~~~~~~-----~----~~~~~~~~~~~~~~~a~~va 76 (355)
+.||.|+++... . +...++..+.++++||+.+-
T Consensus 41 nafiqSLkDDp~veeq~ngfiqslkddpSqSanlLaEAKKLN 82 (88)
T 2lr2_A 41 NAFIQSLKDDSYIDTNNDGAYEGDELSGSQSANLLAEAKKLN 82 (88)
T ss_dssp HHHHHHHHHTSCCCTTCSSSCCGGGSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHhccCcchhhhcccchhccccccchhHHHHHHHHHcc
Confidence 568888875321 1 11122333578999999864
No 7
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=9.93 E-value=28 Score=29.04 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=33.0
Q ss_pred hhhhcceecCCccccccCCceeeecCCCCcccccccCCChhhhh-hhhhhhcc
Q 043222 73 KFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTL-VQGTRWNC 124 (355)
Q Consensus 73 ~~vasC~YE~~T~WG~evGWrSvY~~p~~~AF~G~AP~~l~~~l-~Qr~RWa~ 124 (355)
...+.|. -+..||.+|=+|++.+ |-..+ .-..=++-.... .|-++|.+
T Consensus 65 ~g~I~C~--Cgq~WG~~m~yk~~~L-P~LkI-ksFVve~~~g~~~~~~kKWk~ 113 (133)
T 3ga3_A 65 NGEIICK--CGQAWGTMMVHKGLDL-PCLKI-RNFVVVFKNNSTKKQYKKWVE 113 (133)
T ss_dssp EEEEEET--TSCEEEEEEEETTEEE-EEECG-GGEEEEETTTTEEECCSSGGG
T ss_pred CceEEEe--cCChhhhhEEeccccC-ceEEE-EEEEEEcCCCceeeccccccC
Confidence 3468898 8889999998888886 54332 444455544443 66788976
No 8
>1q01_A Lebetin 2 isoform alpha; beta-bulged hairpain, blood clotting; NMR {Macrovipera lebetina}
Probab=7.64 E-value=1.1e+02 Score=19.88 Aligned_cols=11 Identities=9% Similarity=-0.139 Sum_probs=8.6
Q ss_pred eeccCcceece
Q 043222 12 IVGNCFYMKRE 22 (355)
Q Consensus 12 y~GTGc~~rR~ 22 (355)
..|+|||=+|-
T Consensus 9 ~~~sgCFG~ri 19 (38)
T 1q01_A 9 GPPNGCFGHKI 19 (38)
T ss_dssp CCSSSSSCCTT
T ss_pred ccCCCcccccc
Confidence 46889998875
No 9
>3n56_C Natriuretic peptides B; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.10A {Homo sapiens}
Probab=6.57 E-value=1.3e+02 Score=18.86 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=7.1
Q ss_pred eccCcceece
Q 043222 13 VGNCFYMKRE 22 (355)
Q Consensus 13 ~GTGc~~rR~ 22 (355)
-++|||=+|-
T Consensus 6 ~~sgCFG~ri 15 (32)
T 3n56_C 6 QGSGCFGRKM 15 (32)
T ss_pred ccCCccccce
Confidence 3578887775
No 10
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=5.89 E-value=6.3e+02 Score=16.53 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=13.9
Q ss_pred CCCccchhHHHHHHHHHHHHH
Q 043222 326 KGQVPASVALLSFVLSIILLL 346 (355)
Q Consensus 326 k~~iP~~v~~~s~~l~~~f~~ 346 (355)
...+|+-+++.|++..++...
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~ 25 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLT 25 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHH
Confidence 456788888888775554443
Done!