Query 043222
Match_columns 355
No_of_seqs 228 out of 663
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043222.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043222hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1deeg_ a.8.1.1 (G:) Immunoglo 18.6 26 0.0019 22.5 1.8 25 44-76 21-45 (51)
2 d1c01a_ b.11.1.5 (A:) Plant an 16.7 20 0.0014 24.6 0.8 27 71-97 42-74 (76)
3 d1lp1a_ a.8.1.1 (A:) Immunoglo 15.6 34 0.0025 22.2 1.8 25 44-76 25-49 (55)
4 d1kf6c_ f.21.2.2 (C:) Fumarate 11.8 2.8E+02 0.021 20.8 6.7 18 274-291 67-84 (130)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 8.1 1.2E+02 0.0086 17.9 2.3 14 153-166 9-22 (36)
6 d1iwga5 d.225.1.1 (A:182-273) 6.4 27 0.002 24.7 -1.7 26 95-120 5-30 (92)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.4 7.1E+02 0.051 20.1 8.6 24 325-348 47-70 (248)
8 d1utga_ a.101.1.1 (A:) Uterogl 5.1 2.2E+02 0.016 19.2 2.7 30 40-78 15-44 (70)
9 d2jn4a1 b.173.1.1 (A:1-66) Unc 4.8 1E+02 0.0074 20.8 0.7 18 79-97 27-48 (66)
10 d9wgaa2 g.3.1.1 (A:53-86) Whea 4.7 68 0.0049 18.9 -0.2 10 9-18 18-27 (34)
No 1
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=18.63 E-value=26 Score=22.50 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=17.0
Q ss_pred hHHHHHHhhhccCCccCCCCCchHHHHHHhhhh
Q 043222 44 NELIISLQRSNQHKTIDNGILSSTLQQEAKFLA 76 (355)
Q Consensus 44 ~~~~~S~~~~~~~~~~~~~~~~~~~~~~a~~va 76 (355)
+.||.|+++ ++..+.+++.||+.+-
T Consensus 21 n~fI~sLkd--------dPs~sanvl~EakkLn 45 (51)
T d1deeg_ 21 NGFIQSLKD--------DPSQSTNVLGEAKKLN 45 (51)
T ss_dssp HHHHHHHHH--------CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhh--------ChHHHHHHHHHHHHcc
Confidence 568999983 1222567999998763
No 2
>d1c01a_ b.11.1.5 (A:) Plant antimicrobial protein MIAMP1 {Macadamia nut (Macadamia integrifolia) [TaxId: 60698]}
Probab=16.68 E-value=20 Score=24.57 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHhhhhcceecCCccccccC------Cceeeec
Q 043222 71 EAKFLASYNYEKNTLWRKQA------RWKSMFC 97 (355)
Q Consensus 71 ~a~~vasC~YE~~T~WG~ev------GWrSvY~ 97 (355)
+|..-+.|+--..|..|+.+ ||||.|.
T Consensus 42 aaynt~~c~gvahtrfgs~~qacs~fgwksffi 74 (76)
T d1c01a_ 42 ALYNQAGCSGVAHTRFGSSARACNPFGWKSIFI 74 (76)
T ss_dssp EEESSGGGCSCEEEEESSCCCBCSCCCCSEEEE
T ss_pred hhhcccccCCccccccccccccccCCCceeeEE
Confidence 34456788888889999888 9999885
No 3
>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=15.63 E-value=34 Score=22.17 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=17.1
Q ss_pred hHHHHHHhhhccCCccCCCCCchHHHHHHhhhh
Q 043222 44 NELIISLQRSNQHKTIDNGILSSTLQQEAKFLA 76 (355)
Q Consensus 44 ~~~~~S~~~~~~~~~~~~~~~~~~~~~~a~~va 76 (355)
+.||.|+++ ++..+.+++.||+.+-
T Consensus 25 n~fIqSLkD--------DPSqSan~LaEAkklN 49 (55)
T d1lp1a_ 25 KAFIFSLWD--------DPSQSANLLAEAKKLN 49 (55)
T ss_dssp HHHHHHHHH--------CGGGHHHHHHHHHHHH
T ss_pred HHHHHHhcc--------ChhHHHHHHHHHHHcc
Confidence 568888873 1222567999999864
No 4
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=11.84 E-value=2.8e+02 Score=20.84 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043222 274 TLVMLNMIAFTGGIARMV 291 (355)
Q Consensus 274 ~l~~lnl~aiv~gi~r~~ 291 (355)
.++++|++++++.+....
T Consensus 67 ~vv~lniiaLaa~L~Ha~ 84 (130)
T d1kf6c_ 67 VIVIINLITLAAALLHTK 84 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356899999998887655
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.12 E-value=1.2e+02 Score=17.90 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 043222 153 LPSWCLAIVPHLCL 166 (355)
Q Consensus 153 ip~l~y~l~P~l~L 166 (355)
+....|.++|..+|
T Consensus 9 iAt~LFilvPt~FL 22 (36)
T d2axtm1 9 IATALFVLVPSVFL 22 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666554
No 6
>d1iwga5 d.225.1.1 (A:182-273) Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains {Escherichia coli [TaxId: 562]}
Probab=6.39 E-value=27 Score=24.70 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=19.6
Q ss_pred eecCCCCcccccccCCChhhhhhhhh
Q 043222 95 MFCNPSRSAFLGSAASSLNDTLVQGT 120 (355)
Q Consensus 95 vY~~p~~~AF~G~AP~~l~~~l~Qr~ 120 (355)
++++|++.+-.|++|.++.+.+.++-
T Consensus 5 I~lDp~kL~~~glt~~dV~~ai~~~N 30 (92)
T d1iwga5 5 IWMNPNELNKFQLTPVDVITAIKAQN 30 (92)
T ss_dssp EEECHHHHHTTTCCHHHHHHHHHHHS
T ss_pred EEECHHHHHHcCCCHHHHHHHHHhhc
Confidence 46777777778888888888886653
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.40 E-value=7.1e+02 Score=20.13 Aligned_cols=24 Identities=4% Similarity=-0.018 Sum_probs=19.6
Q ss_pred cCCCccchhHHHHHHHHHHHHHHH
Q 043222 325 DKGQVPASVALLSFVLSIILLLLG 348 (355)
Q Consensus 325 ~k~~iP~~v~~~s~~l~~~f~~~~ 348 (355)
.|+..|.+-++-.+++-++|+++-
T Consensus 47 s~r~~p~kyi~PG~~~l~~Fvi~P 70 (248)
T d2r6gf1 47 NRKAYAWRYVYPGMAGMGLFVLFP 70 (248)
T ss_dssp SSCCTTHHHHHHHHHHHHHHTHHH
T ss_pred ccCccceehhhhHHHHHHHHHHHh
Confidence 457889999999998888887753
No 8
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.14 E-value=2.2e+02 Score=19.25 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=17.8
Q ss_pred cCCchHHHHHHhhhccCCccCCCCCchHHHHHHhhhhcc
Q 043222 40 FGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASY 78 (355)
Q Consensus 40 fg~s~~~~~S~~~~~~~~~~~~~~~~~~~~~~a~~vasC 78 (355)
.|+..++++++. .-++.++++|+|.++=+|
T Consensus 15 ~GT~eeY~~~vk---------~y~~~~~~le~~~~lK~c 44 (70)
T d1utga_ 15 LGTPSSYETSLK---------EFEPDDTMKDAGMQMKKV 44 (70)
T ss_dssp HSCHHHHHHHHH---------TTCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH---------ccCCCHHHHHHHHHHHHH
Confidence 466666766665 112235677777776666
No 9
>d2jn4a1 b.173.1.1 (A:1-66) Uncharacterized protein FixU (NifT) {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.80 E-value=1e+02 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=14.1
Q ss_pred eecCCccccccC----Cceeeec
Q 043222 79 NYEKNTLWRKQA----RWKSMFC 97 (355)
Q Consensus 79 ~YE~~T~WG~ev----GWrSvY~ 97 (355)
.-|+...||..| ||+= |+
T Consensus 27 ~~e~~~~wGG~vtL~NGw~l-~l 48 (66)
T d2jn4a1 27 EMENPALWGGKVTLANGWQL-EL 48 (66)
T ss_dssp EESSSSSCSSEEEETTSCEE-EC
T ss_pred eeecCCccCCEEEeCCccEE-Ec
Confidence 456777999999 9976 44
No 10
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Probab=4.73 E-value=68 Score=18.95 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=7.4
Q ss_pred CcceeccCcc
Q 043222 9 GTNIVGNCFY 18 (355)
Q Consensus 9 Gp~y~GTGc~ 18 (355)
++-|.|+||-
T Consensus 18 t~~yCg~GCQ 27 (34)
T d9wgaa2 18 GAEYCGAGCQ 27 (34)
T ss_dssp SHHHHSTTCC
T ss_pred chhhhccccc
Confidence 5668888883
Done!