BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043223
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 272
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKT--QLKQAKSDCSGNIRRV-- 59
LP +++ I S L + LL+ V K W+ L SD +T + + D S ++ V
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVST 71
Query: 60 ----LLTTSPLQSIDYEAFGFGD 78
L S LQ++ E D
Sbjct: 72 LHGILSQCSKLQNLSLEGLRLSD 94
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 137 PFPEQVIRGFISTIGNGNVSRETKVQVFSL 166
PF ++V++ + +GN NV R K Q+ S+
Sbjct: 562 PFCDEVMQLLLENLGNENVHRSVKPQILSV 591
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 137 PFPEQVIRGFISTIGNGNVSRETKVQVFSL 166
PF ++V++ + +GN NV R K Q+ S+
Sbjct: 687 PFCDEVMQLLLENLGNENVHRSVKPQILSV 716
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 137 PFPEQVIRGFISTIGNGNVSRETKVQVFSL 166
PF ++V++ + +GN NV R K Q+ S+
Sbjct: 687 PFCDEVMQLLLENLGNENVHRSVKPQILSV 716
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 137 PFPEQVIRGFISTIGNGNVSRETKVQVFSL 166
PF ++V++ + +GN NV R K Q+ S+
Sbjct: 687 PFCDEVMQLLLENLGNENVHRSVKPQILSV 716
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 8 IVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQ 47
I +ILS L KSL + V K W+ + SD K +++
Sbjct: 22 IAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61
>pdb|1SFX|A Chain A, X-Ray Crystal Structure Of Putative Hth Transcription
Regulator From Archaeoglobus Fulgidus
pdb|1SFX|B Chain B, X-Ray Crystal Structure Of Putative Hth Transcription
Regulator From Archaeoglobus Fulgidus
Length = 109
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRV 59
L V D L L + +R + V K W I ++ + LK+ KS G I R+
Sbjct: 46 LSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGEIERI 101
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKT 43
LP +++ I S L + LL+ V K W+ L SD +T
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
P27 Peptide
Length = 336
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKT 43
LP +++ I S L + LL+ V K W+ L SD +T
Sbjct: 12 LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51
>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
Length = 517
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 79 GSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPF 138
G ++T++LG + DDADI + G + +F S+ V N TRV + A F
Sbjct: 250 GHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSN-GTRVFVQKKAKARF 308
Query: 139 PEQVIR 144
E + R
Sbjct: 309 LENLKR 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,198,436
Number of Sequences: 62578
Number of extensions: 254152
Number of successful extensions: 461
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 33
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)