Query 043223
Match_columns 202
No_of_seqs 163 out of 1315
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 02:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.8 3.6E-19 7.8E-24 136.6 11.1 97 103-201 1-112 (230)
2 PF12937 F-box-like: F-box-lik 99.2 1E-11 2.2E-16 71.2 2.8 40 1-40 1-40 (47)
3 PF00646 F-box: F-box domain; 99.1 1.7E-11 3.7E-16 70.6 1.2 44 2-45 4-47 (48)
4 smart00256 FBOX A Receptor for 99.0 1.4E-10 3E-15 64.3 2.2 39 4-42 1-39 (41)
5 PLN03215 ascorbic acid mannose 98.1 1.6E-06 3.5E-11 70.3 2.0 36 2-37 5-41 (373)
6 KOG2120 SCF ubiquitin ligase, 97.6 3E-05 6.5E-10 60.8 2.0 38 2-39 99-136 (419)
7 KOG4441 Proteins containing BT 97.6 0.001 2.2E-08 57.8 11.1 95 103-199 423-530 (571)
8 KOG4441 Proteins containing BT 97.4 0.00077 1.7E-08 58.5 8.0 97 102-200 327-436 (571)
9 PHA02713 hypothetical protein; 97.3 0.0057 1.2E-07 53.1 12.1 95 103-199 299-406 (557)
10 PHA02790 Kelch-like protein; P 97.2 0.0065 1.4E-07 51.8 11.5 91 102-199 357-454 (480)
11 KOG2997 F-box protein FBX9 [Ge 97.2 0.00018 4E-09 56.5 1.7 45 1-45 107-156 (366)
12 PHA02713 hypothetical protein; 97.1 0.0061 1.3E-07 52.9 10.9 83 117-200 432-521 (557)
13 PHA02790 Kelch-like protein; P 97.1 0.01 2.3E-07 50.6 11.5 94 103-198 314-414 (480)
14 KOG0281 Beta-TrCP (transducin 97.1 0.00029 6.2E-09 56.1 1.8 43 2-44 76-122 (499)
15 TIGR03548 mutarot_permut cycli 96.9 0.036 7.8E-07 44.6 12.5 42 159-200 271-312 (323)
16 TIGR03547 muta_rot_YjhT mutatr 96.9 0.028 6.1E-07 45.7 12.0 40 159-198 168-207 (346)
17 PRK14131 N-acetylneuraminic ac 96.9 0.026 5.6E-07 46.5 11.9 41 159-199 189-229 (376)
18 PHA03098 kelch-like protein; P 96.7 0.018 3.8E-07 49.7 9.9 82 117-199 311-397 (534)
19 PHA03098 kelch-like protein; P 96.6 0.035 7.6E-07 47.9 11.3 95 103-198 338-444 (534)
20 TIGR03548 mutarot_permut cycli 96.4 0.092 2E-06 42.3 12.0 81 117-198 88-178 (323)
21 PLN02153 epithiospecifier prot 96.4 0.077 1.7E-06 43.1 11.5 81 117-198 50-144 (341)
22 PLN02153 epithiospecifier prot 96.0 0.15 3.3E-06 41.4 11.3 95 103-197 81-199 (341)
23 PF13964 Kelch_6: Kelch motif 95.6 0.022 4.8E-07 32.3 3.7 24 115-138 26-49 (50)
24 PLN02193 nitrile-specifier pro 95.6 0.32 6.9E-06 41.5 12.1 94 104-198 225-335 (470)
25 PLN02193 nitrile-specifier pro 95.1 0.2 4.4E-06 42.6 9.2 81 117-198 193-285 (470)
26 TIGR03547 muta_rot_YjhT mutatr 94.4 0.42 9.1E-06 38.8 9.2 82 117-198 168-264 (346)
27 PF13964 Kelch_6: Kelch motif 93.8 0.076 1.6E-06 30.1 2.7 24 156-179 25-48 (50)
28 smart00612 Kelch Kelch domain. 93.8 0.09 1.9E-06 28.8 3.0 35 157-192 13-47 (47)
29 PRK14131 N-acetylneuraminic ac 93.1 2.9 6.3E-05 34.5 11.9 95 104-199 35-147 (376)
30 KOG4341 F-box protein containi 92.7 0.058 1.2E-06 44.6 1.4 35 3-37 74-108 (483)
31 PF01344 Kelch_1: Kelch motif; 92.6 0.12 2.7E-06 28.6 2.4 23 156-178 25-47 (47)
32 KOG0274 Cdc4 and related F-box 92.5 0.042 9E-07 47.5 0.4 42 1-42 108-149 (537)
33 KOG0379 Kelch repeat-containin 89.1 7.6 0.00016 33.3 10.9 70 107-176 123-207 (482)
34 PF13418 Kelch_4: Galactose ox 89.0 0.34 7.4E-06 27.1 1.9 21 116-136 28-48 (49)
35 PF13418 Kelch_4: Galactose ox 88.6 0.46 9.9E-06 26.6 2.3 22 157-178 27-48 (49)
36 smart00612 Kelch Kelch domain. 88.3 0.82 1.8E-05 24.8 3.2 25 116-140 14-38 (47)
37 KOG4693 Uncharacterized conser 87.4 2.6 5.7E-05 33.1 6.3 82 116-198 215-309 (392)
38 PF13415 Kelch_3: Galactose ox 86.2 1.7 3.7E-05 24.3 3.8 25 116-140 18-42 (49)
39 PF07646 Kelch_2: Kelch motif; 85.5 1.1 2.3E-05 25.2 2.6 22 156-177 27-48 (49)
40 PF13415 Kelch_3: Galactose ox 83.7 1.2 2.5E-05 25.0 2.3 25 156-180 16-40 (49)
41 KOG4693 Uncharacterized conser 83.5 2.5 5.4E-05 33.2 4.6 83 116-200 104-200 (392)
42 KOG1230 Protein containing rep 79.4 37 0.0008 28.6 12.1 61 116-176 153-224 (521)
43 PF13013 F-box-like_2: F-box-l 69.3 2.7 5.9E-05 28.2 1.2 28 2-29 23-50 (109)
44 smart00564 PQQ beta-propeller 68.7 13 0.00028 18.3 3.6 27 105-131 4-30 (33)
45 KOG2502 Tub family proteins [G 66.8 2.9 6.3E-05 33.9 1.1 36 2-37 46-89 (355)
46 KOG0379 Kelch repeat-containin 55.1 1.4E+02 0.003 25.8 10.8 96 101-198 168-282 (482)
47 KOG3926 F-box proteins [Amino 54.7 10 0.00022 29.9 2.1 37 2-38 203-240 (332)
48 PF03088 Str_synth: Strictosid 50.3 17 0.00038 23.4 2.4 18 116-133 36-53 (89)
49 PF15408 PH_7: Pleckstrin homo 47.2 5.9 0.00013 25.3 -0.1 24 18-41 76-99 (104)
50 PF06881 Elongin_A: RNA polyme 45.9 25 0.00055 23.4 2.8 27 2-28 5-31 (109)
51 PF11932 DUF3450: Protein of u 45.9 14 0.00031 28.6 1.8 27 108-134 193-219 (251)
52 KOG1310 WD40 repeat protein [G 44.7 1.1E+02 0.0024 27.0 6.8 28 105-132 59-87 (758)
53 PF13018 ESPR: Extended Signal 41.7 20 0.00044 17.0 1.3 15 120-134 7-21 (24)
54 PF07861 WND: WisP family N-Te 37.7 60 0.0013 24.2 3.8 33 97-129 30-62 (263)
55 PF13570 PQQ_3: PQQ-like domai 35.4 61 0.0013 16.8 2.8 23 104-126 18-40 (40)
56 KOG1230 Protein containing rep 34.0 3E+02 0.0065 23.5 8.4 39 97-135 178-225 (521)
57 PF14377 DUF4414: Domain of un 32.1 20 0.00044 23.9 0.6 14 2-15 7-20 (108)
58 PF11012 DUF2850: Protein of u 30.9 55 0.0012 20.6 2.4 26 169-194 4-32 (79)
59 PF11900 DUF3420: Domain of un 30.9 36 0.00078 19.3 1.4 10 3-12 10-19 (49)
60 PRK13259 regulatory protein Sp 30.3 48 0.001 21.7 2.1 35 97-131 31-70 (94)
61 PF09003 Phage_integ_N: Bacter 30.2 41 0.00089 21.0 1.7 17 116-132 25-42 (75)
62 PF11547 E3_UbLigase_EDD: E3 u 30.2 34 0.00074 19.2 1.2 19 2-20 6-24 (53)
63 PF07893 DUF1668: Protein of u 26.0 3.7E+02 0.0079 22.0 9.8 40 99-138 68-107 (342)
64 COG5559 Uncharacterized conser 25.5 53 0.0012 19.3 1.5 14 3-16 10-23 (65)
65 COG1327 Predicted transcriptio 24.5 54 0.0012 23.5 1.6 34 7-43 110-143 (156)
66 COG3055 Uncharacterized protei 24.0 1E+02 0.0022 25.5 3.3 42 156-197 110-152 (381)
67 PRK10753 transcriptional regul 23.5 44 0.00096 21.4 1.0 16 121-136 60-75 (90)
68 COG3196 Uncharacterized protei 23.1 67 0.0015 22.8 1.9 16 3-18 83-98 (183)
69 PF07433 DUF1513: Protein of u 23.0 4.1E+02 0.009 21.5 7.1 62 114-178 25-95 (305)
70 PRK10664 transcriptional regul 22.7 47 0.001 21.3 1.0 15 122-136 61-75 (90)
71 PF01807 zf-CHC2: CHC2 zinc fi 22.6 70 0.0015 20.8 1.9 21 4-24 1-21 (97)
72 COG3055 Uncharacterized protei 22.5 1.1E+02 0.0024 25.3 3.2 26 157-182 316-341 (381)
73 TIGR03493 cellullose_BcsF cell 22.2 31 0.00067 20.5 0.1 30 13-42 15-46 (62)
74 KOG2321 WD40 repeat protein [G 21.1 1.2E+02 0.0027 26.7 3.4 30 103-132 183-212 (703)
75 KOG0296 Angio-associated migra 21.1 99 0.0021 25.6 2.7 17 115-131 210-226 (399)
76 PF06348 DUF1059: Protein of u 20.8 82 0.0018 18.3 1.7 16 1-16 39-54 (57)
77 PF08793 2C_adapt: 2-cysteine 20.1 44 0.00095 17.7 0.4 10 122-131 12-21 (37)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.80 E-value=3.6e-19 Score=136.56 Aligned_cols=97 Identities=31% Similarity=0.566 Sum_probs=71.4
Q ss_pred eceeCceEEEEeCCCcEEEEcccccceeecCCCCCCC--CC-ceeEEEE--------EE--cC--CCCCCccEEEEEecC
Q 043223 103 IGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFP--EQ-VIRGFIS--------TI--GN--GNVSRETKVQVFSLK 167 (202)
Q Consensus 103 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~lP~~~~~~--~~-~~~~~g~--------Vv--~~--~~~~~~~~~~vy~s~ 167 (202)
+++||||||+.. ...++||||+||+++.||+++... .. ..+|||| |+ .. .. .....++||+++
T Consensus 1 ~~sCnGLlc~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSY-GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEec-CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeC
Confidence 479999999984 489999999999999998765421 11 1578998 33 11 11 245689999999
Q ss_pred CCceeEccccCcccccCCcceEECCeEEEEeeec
Q 043223 168 NNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILE 201 (202)
Q Consensus 168 t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~ 201 (202)
+++||.++..+........+|++||++||++.++
T Consensus 79 ~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~ 112 (230)
T TIGR01640 79 SNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTL 112 (230)
T ss_pred CCCccccccCCCCccccCCeEEECCEEEEEEEEC
Confidence 9999999743333222334999999999998753
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.20 E-value=1e-11 Score=71.17 Aligned_cols=40 Identities=30% Similarity=0.645 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHH
Q 043223 1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF 40 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F 40 (202)
|+.||+|++.+||..||++++.++.+|||+|++++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 5789999999999999999999999999999999988744
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=99.12 E-value=1.7e-11 Score=70.56 Aligned_cols=44 Identities=41% Similarity=0.650 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHH
Q 043223 2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQL 45 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~ 45 (202)
.+||+|++.+||.+|+.+++.+++.|||+|++++.++.+...+.
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 46999999999999999999999999999999999998866543
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=99.02 E-value=1.4e-10 Score=64.31 Aligned_cols=39 Identities=49% Similarity=0.813 Sum_probs=36.7
Q ss_pred CcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHH
Q 043223 4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAK 42 (202)
Q Consensus 4 LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~ 42 (202)
||+|++.+||.+|+.+++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988753
No 5
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.08 E-value=1.6e-06 Score=70.28 Aligned_cols=36 Identities=31% Similarity=0.571 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHHhcCC-hhhhHhhhccccccccccCC
Q 043223 2 AKLPQDIVADILSRLP-VKSLLRFKCVSKPWFSLISD 37 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~ 37 (202)
++||+||+..|..||| .-+++|||+|||+||+.+..
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4799999999999997 66999999999999998774
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3e-05 Score=60.82 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHhcCChhhhHhhhccccccccccCChH
Q 043223 2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQ 39 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~ 39 (202)
.+||||++..||+.|+.|+|.++..|||+|..+-++..
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999877654
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.58 E-value=0.001 Score=57.81 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=64.9
Q ss_pred eceeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCc-eeEEE-EEE--c--CCCCCCccEEEEEecCCC
Q 043223 103 IGSCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGFI-STI--G--NGNVSRETKVQVFSLKNN 169 (202)
Q Consensus 103 ~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g-~Vv--~--~~~~~~~~~~~vy~s~t~ 169 (202)
++..+|.|+... .-..+-.+||.|++|..+|+....+... ...++ +|+ . ++. .....+|.||..++
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~-~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGT-SALSSVERYDPETN 501 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCC-CccceEEEEcCCCC
Confidence 556788888773 1257899999999999999998876632 11111 142 2 222 34566999999999
Q ss_pred ceeEccccCcccccCCcceEECCeEEEEee
Q 043223 170 SWKEIQYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 170 ~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
+|+.+..++... .....+.++|.+|-+..
T Consensus 502 ~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 502 QWTMVAPMTSPR-SAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ceeEcccCcccc-ccccEEEECCEEEEEec
Confidence 999996555442 23344678888887654
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.39 E-value=0.00077 Score=58.51 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=68.5
Q ss_pred EeceeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCc-e---eEEEEEE--cCCCCCCccEEEEEecCC
Q 043223 102 IIGSCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQV-I---RGFISTI--GNGNVSRETKVQVFSLKN 168 (202)
Q Consensus 102 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~---~~~g~Vv--~~~~~~~~~~~~vy~s~t 168 (202)
.++..+|.|...+ ..+.+..+||.|++|..+|++...+... . .|.=|++ .++. .....+|.||..+
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVT 405 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccc-cccccEEEecCCC
Confidence 3556667666653 2367899999999999999988776632 1 1111233 2344 5667899999999
Q ss_pred CceeEccccCcccccCCcceEECCeEEEEeee
Q 043223 169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLGIL 200 (202)
Q Consensus 169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~ 200 (202)
+.|..++.++. .......+.++|.+|=+...
T Consensus 406 ~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 406 NKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CcccccCCCCc-ceeeeEEEEECCEEEEEcCc
Confidence 99999987777 34455567899999987643
No 9
>PHA02713 hypothetical protein; Provisional
Probab=97.28 E-value=0.0057 Score=53.08 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=62.4
Q ss_pred eceeCceEEEEeC-------CCcEEEEcccccceeecCCCCCCCCC-ceeEEE-EE--EcC--CCCCCccEEEEEecCCC
Q 043223 103 IGSCNGLVCIDFD-------STNMVLWNPSTRVSRELPRPAPFPEQ-VIRGFI-ST--IGN--GNVSRETKVQVFSLKNN 169 (202)
Q Consensus 103 ~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~lP~~~~~~~~-~~~~~g-~V--v~~--~~~~~~~~~~vy~s~t~ 169 (202)
++..+|.|.+.+. ...+..+||.+++|..+|+.+..+.. ....++ .| +.. +. .....+|+|+..++
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~ 377 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDD 377 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCC
Confidence 3445666655421 24588999999999999988765442 111111 13 322 12 33457999999999
Q ss_pred ceeEccccCcccccCCcceEECCeEEEEee
Q 043223 170 SWKEIQYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 170 ~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
+|+.++.+|.... ....+.++|.+|-+..
T Consensus 378 ~W~~~~~mp~~r~-~~~~~~~~g~IYviGG 406 (557)
T PHA02713 378 KWKMLPDMPIALS-SYGMCVLDQYIYIIGG 406 (557)
T ss_pred eEEECCCCCcccc-cccEEEECCEEEEEeC
Confidence 9999987776543 3445678999998753
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=97.21 E-value=0.0065 Score=51.78 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=62.0
Q ss_pred EeceeCceEEEEe----CCCcEEEEcccccceeecCCCCCCCCCc-eeEEEE-EE-cCCCCCCccEEEEEecCCCceeEc
Q 043223 102 IIGSCNGLVCIDF----DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGFIS-TI-GNGNVSRETKVQVFSLKNNSWKEI 174 (202)
Q Consensus 102 ~~~s~~Gll~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g~-Vv-~~~~~~~~~~~~vy~s~t~~W~~~ 174 (202)
..+.++|.|.+.+ ....+.++||.|.+|..+|+++..+... ...+|- |+ ..+ .+|+|+.++++|+.+
T Consensus 357 ~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 357 AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------NAEFYCESSNTWTLI 430 (480)
T ss_pred EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------ceEEecCCCCcEeEc
Confidence 4567888887763 1245778999999999998887654431 212221 32 222 278999999999999
Q ss_pred cccCcccccCCcceEECCeEEEEee
Q 043223 175 QYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 175 ~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
+.++.. +.....+.++|.+|-+..
T Consensus 431 ~~m~~~-r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 431 DDPIYP-RDNPELIIVDNKLLLIGG 454 (480)
T ss_pred CCCCCC-ccccEEEEECCEEEEECC
Confidence 877654 234456788999998754
No 11
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.18 E-value=0.00018 Score=56.52 Aligned_cols=45 Identities=16% Similarity=0.387 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHhcC-----ChhhhHhhhccccccccccCChHHHHHHH
Q 043223 1 MAKLPQDIVADILSRL-----PVKSLLRFKCVSKPWFSLISDSQFAKTQL 45 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rL-----P~~~l~r~r~VcK~W~~li~~p~F~~~~~ 45 (202)
|+.||||++.+||.++ .+.+|.++.+|||.|+-...+|.|-+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 4579999999999876 36999999999999999999998866543
No 12
>PHA02713 hypothetical protein; Provisional
Probab=97.15 E-value=0.0061 Score=52.90 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=55.9
Q ss_pred CcEEEEcccccceeecCCCCCCCCCc-eeEEEE-E--EcCC--CCCCccEEEEEecCC-CceeEccccCcccccCCcceE
Q 043223 117 TNMVLWNPSTRVSRELPRPAPFPEQV-IRGFIS-T--IGNG--NVSRETKVQVFSLKN-NSWKEIQYFHARIDIYGLGVL 189 (202)
Q Consensus 117 ~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g~-V--v~~~--~~~~~~~~~vy~s~t-~~W~~~~~~~~~~~~~~~~v~ 189 (202)
..+.++||.|.+|..+|+.+..+... ...++- | +... .......+|.|+.++ ++|+.+..+|.... ....+.
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~ 510 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTIL 510 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEE
Confidence 35889999999999998876654431 222221 3 3221 101224589999999 89999988877543 455678
Q ss_pred ECCeEEEEeee
Q 043223 190 SNGKLHWLGIL 200 (202)
Q Consensus 190 ~~G~lywl~~~ 200 (202)
++|.+|-+...
T Consensus 511 ~~~~iyv~Gg~ 521 (557)
T PHA02713 511 HDNTIMMLHCY 521 (557)
T ss_pred ECCEEEEEeee
Confidence 89999988643
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=97.07 E-value=0.01 Score=50.55 Aligned_cols=94 Identities=10% Similarity=0.057 Sum_probs=61.9
Q ss_pred eceeCceEEEEe---CCCcEEEEcccccceeecCCCCCCCCCc-eeEE-EEEE--cCCCCCCccEEEEEecCCCceeEcc
Q 043223 103 IGSCNGLVCIDF---DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGF-ISTI--GNGNVSRETKVQVFSLKNNSWKEIQ 175 (202)
Q Consensus 103 ~~s~~Gll~~~~---~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~-g~Vv--~~~~~~~~~~~~vy~s~t~~W~~~~ 175 (202)
..+.+|.|.+.. ....+..+||.+++|..+|+++..+... ...+ |.|+ .... .....+|.|+.++++|+.++
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~-~~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHS-ETDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcC-CCCccEEEEeCCCCEEEeCC
Confidence 446778777663 2356788999999999999887655421 1111 1242 2221 23357899999999999987
Q ss_pred ccCcccccCCcceEECCeEEEEe
Q 043223 176 YFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 176 ~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
.++.+.. ....+.++|.+|-+.
T Consensus 393 ~m~~~r~-~~~~~~~~~~IYv~G 414 (480)
T PHA02790 393 STYYPHY-KSCALVFGRRLFLVG 414 (480)
T ss_pred CCCCccc-cceEEEECCEEEEEC
Confidence 7665532 344567899988763
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.06 E-value=0.00029 Score=56.11 Aligned_cols=43 Identities=35% Similarity=0.466 Sum_probs=38.7
Q ss_pred CCCc----HHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHH
Q 043223 2 AKLP----QDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQ 44 (202)
Q Consensus 2 ~~LP----~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~ 44 (202)
..|| +++.+.||+.|...+|..+..|||+|+.+++++-.-++-
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 4689 999999999999999999999999999999998765543
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.88 E-value=0.036 Score=44.62 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=32.6
Q ss_pred cEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEeee
Q 043223 159 TKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGIL 200 (202)
Q Consensus 159 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~ 200 (202)
..+++||..+++|..++.+|...+.....+.++|.+|.+..+
T Consensus 271 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred ceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 469999999999999986664434445568899999988643
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.87 E-value=0.028 Score=45.67 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=30.1
Q ss_pred cEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEe
Q 043223 159 TKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 159 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
..+++|+..+++|+.++.+|.........+.++|.+|-+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G 207 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLIN 207 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEe
Confidence 5799999999999999877653333344457788988774
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.87 E-value=0.026 Score=46.54 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=31.1
Q ss_pred cEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEee
Q 043223 159 TKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 159 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
..+++||..+++|+.++.+|.........+.++|.+|.+..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEee
Confidence 57999999999999988776533333445677999998864
No 18
>PHA03098 kelch-like protein; Provisional
Probab=96.68 E-value=0.018 Score=49.72 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=54.0
Q ss_pred CcEEEEcccccceeecCCCCCCCCCc-eeEEE-EE--EcC-CCCCCccEEEEEecCCCceeEccccCcccccCCcceEEC
Q 043223 117 TNMVLWNPSTRVSRELPRPAPFPEQV-IRGFI-ST--IGN-GNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSN 191 (202)
Q Consensus 117 ~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g-~V--v~~-~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~ 191 (202)
..++.+||.|++|..+|+.+..+... ...++ .| +.. ........+++|+..+++|+..+.+|.+. .....+.++
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~~~~ 389 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-YNPCVVNVN 389 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-ccceEEEEC
Confidence 47899999999999999877544321 11111 12 221 11134467999999999999988777543 234456788
Q ss_pred CeEEEEee
Q 043223 192 GKLHWLGI 199 (202)
Q Consensus 192 G~lywl~~ 199 (202)
|.+|-+..
T Consensus 390 ~~iYv~GG 397 (534)
T PHA03098 390 NLIYVIGG 397 (534)
T ss_pred CEEEEECC
Confidence 88887653
No 19
>PHA03098 kelch-like protein; Provisional
Probab=96.62 E-value=0.035 Score=47.90 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=59.8
Q ss_pred eceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCce-eEEE-EE--EcC--CCCCCccEEEEEecCCCc
Q 043223 103 IGSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVI-RGFI-ST--IGN--GNVSRETKVQVFSLKNNS 170 (202)
Q Consensus 103 ~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~g-~V--v~~--~~~~~~~~~~vy~s~t~~ 170 (202)
+.+.+|-|.+.. ....+.++||.|++|..+|+.+..+.... ...+ .| +.. ........+++|+..+++
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 344566665542 23568899999999999987765543211 1111 13 221 110234679999999999
Q ss_pred eeEccccCcccccCCcceEECCeEEEEe
Q 043223 171 WKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 171 W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
|+.+..+|.... ....+..+|.+|-+.
T Consensus 418 W~~~~~~p~~r~-~~~~~~~~~~iyv~G 444 (534)
T PHA03098 418 WSKGSPLPISHY-GGCAIYHDGKIYVIG 444 (534)
T ss_pred eeecCCCCcccc-CceEEEECCEEEEEC
Confidence 999887665532 344567788888664
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.43 E-value=0.092 Score=42.25 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=51.8
Q ss_pred CcEEEEcccccce----eecCCCCCCCCCc-eeEEE-EE--EcC--CCCCCccEEEEEecCCCceeEccccCcccccCCc
Q 043223 117 TNMVLWNPSTRVS----RELPRPAPFPEQV-IRGFI-ST--IGN--GNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGL 186 (202)
Q Consensus 117 ~~~~V~NP~T~~~----~~lP~~~~~~~~~-~~~~g-~V--v~~--~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~ 186 (202)
..++.+|+.+++| ..+|+.+..+... ...++ .| +.. .. .....+++|+.++++|+.++.+|...+....
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~ 166 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQPV 166 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCcce
Confidence 5788899999987 6677766554321 11111 13 211 11 3346799999999999998766643333344
Q ss_pred ceEECCeEEEEe
Q 043223 187 GVLSNGKLHWLG 198 (202)
Q Consensus 187 ~v~~~G~lywl~ 198 (202)
.+.++|.+|-+.
T Consensus 167 ~~~~~~~iYv~G 178 (323)
T TIGR03548 167 CVKLQNELYVFG 178 (323)
T ss_pred EEEECCEEEEEc
Confidence 467888888764
No 21
>PLN02153 epithiospecifier protein
Probab=96.41 E-value=0.077 Score=43.07 Aligned_cols=81 Identities=7% Similarity=0.108 Sum_probs=48.6
Q ss_pred CcEEEEcccccceeecCCCCC-CCCC--c--eeEEEE-E--Ec--CCCCCCccEEEEEecCCCceeEccccCc----ccc
Q 043223 117 TNMVLWNPSTRVSRELPRPAP-FPEQ--V--IRGFIS-T--IG--NGNVSRETKVQVFSLKNNSWKEIQYFHA----RID 182 (202)
Q Consensus 117 ~~~~V~NP~T~~~~~lP~~~~-~~~~--~--~~~~g~-V--v~--~~~~~~~~~~~vy~s~t~~W~~~~~~~~----~~~ 182 (202)
..++++||.+++|..+|+... .+.. . ...++- | +. ... .....+++|+.++++|+.++.++. ..+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 478999999999999876532 2111 0 111111 3 31 111 234579999999999998865521 112
Q ss_pred cCCcceEECCeEEEEe
Q 043223 183 IYGLGVLSNGKLHWLG 198 (202)
Q Consensus 183 ~~~~~v~~~G~lywl~ 198 (202)
.....+..+|.+|-+.
T Consensus 129 ~~~~~~~~~~~iyv~G 144 (341)
T PLN02153 129 TFHSMASDENHVYVFG 144 (341)
T ss_pred eeeEEEEECCEEEEEC
Confidence 2344567788888653
No 22
>PLN02153 epithiospecifier protein
Probab=96.02 E-value=0.15 Score=41.36 Aligned_cols=95 Identities=7% Similarity=0.038 Sum_probs=53.5
Q ss_pred eceeCceEEEEe------CCCcEEEEcccccceeecCCC-----CCCCCCc-eeEE-E--EEEcC-CC------CCCccE
Q 043223 103 IGSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRP-----APFPEQV-IRGF-I--STIGN-GN------VSRETK 160 (202)
Q Consensus 103 ~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~-----~~~~~~~-~~~~-g--~Vv~~-~~------~~~~~~ 160 (202)
+.+.+|.|.+.. ....+.++||.|++|..+++. +..+... .... + ||+.. .. ......
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 345566665542 124789999999999999764 2222110 1111 1 12211 10 012246
Q ss_pred EEEEecCCCceeEccccCccc--ccCCcceEECCeEEEE
Q 043223 161 VQVFSLKNNSWKEIQYFHARI--DIYGLGVLSNGKLHWL 197 (202)
Q Consensus 161 ~~vy~s~t~~W~~~~~~~~~~--~~~~~~v~~~G~lywl 197 (202)
+++|+.++++|+.++.+.... +.....+.++|.+|-+
T Consensus 161 v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~ 199 (341)
T PLN02153 161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVV 199 (341)
T ss_pred EEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEE
Confidence 899999999999987543221 2223345678888765
No 23
>PF13964 Kelch_6: Kelch motif
Probab=95.65 E-value=0.022 Score=32.34 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.4
Q ss_pred CCCcEEEEcccccceeecCCCCCC
Q 043223 115 DSTNMVLWNPSTRVSRELPRPAPF 138 (202)
Q Consensus 115 ~~~~~~V~NP~T~~~~~lP~~~~~ 138 (202)
....+.++||.|++|..+|+++..
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred ccccEEEEcCCCCcEEECCCCCCC
Confidence 357899999999999999987643
No 24
>PLN02193 nitrile-specifier protein
Probab=95.63 E-value=0.32 Score=41.47 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=54.6
Q ss_pred ceeCceEEEEe------CCCcEEEEcccccceeecCCCC---CCCCCc-eeEEE---EEEc--CCCCCCccEEEEEecCC
Q 043223 104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPA---PFPEQV-IRGFI---STIG--NGNVSRETKVQVFSLKN 168 (202)
Q Consensus 104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~---~~~~~~-~~~~g---~Vv~--~~~~~~~~~~~vy~s~t 168 (202)
...++.|.+.. ..+.++++||.|++|..+++.. ..+... ....+ ||+. ... .....+++|+..+
T Consensus 225 v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t 303 (470)
T PLN02193 225 VSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVD 303 (470)
T ss_pred EEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCC
Confidence 34566665542 2367899999999999997652 222211 11111 1231 122 3445789999999
Q ss_pred CceeEccccCcc--cccCCcceEECCeEEEEe
Q 043223 169 NSWKEIQYFHAR--IDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 169 ~~W~~~~~~~~~--~~~~~~~v~~~G~lywl~ 198 (202)
++|+.+...... .+.....+.++|.+|-+.
T Consensus 304 ~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviG 335 (470)
T PLN02193 304 KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVY 335 (470)
T ss_pred CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEE
Confidence 999987532111 122334456788888654
No 25
>PLN02193 nitrile-specifier protein
Probab=95.08 E-value=0.2 Score=42.62 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=47.9
Q ss_pred CcEEEEcccccceeecCCCCCCC----CCc-eeEEE---EEEc--CCCCCCccEEEEEecCCCceeEccccCcc--cccC
Q 043223 117 TNMVLWNPSTRVSRELPRPAPFP----EQV-IRGFI---STIG--NGNVSRETKVQVFSLKNNSWKEIQYFHAR--IDIY 184 (202)
Q Consensus 117 ~~~~V~NP~T~~~~~lP~~~~~~----~~~-~~~~g---~Vv~--~~~~~~~~~~~vy~s~t~~W~~~~~~~~~--~~~~ 184 (202)
..++++||.|.+|..+|...... ... ....+ ||+. +.. .....+++|++.+++|+.+..+... .+..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence 45899999999999887542111 110 11111 1231 111 3345799999999999998655221 1223
Q ss_pred CcceEECCeEEEEe
Q 043223 185 GLGVLSNGKLHWLG 198 (202)
Q Consensus 185 ~~~v~~~G~lywl~ 198 (202)
...+..++.+|-+.
T Consensus 272 h~~~~~~~~iYv~G 285 (470)
T PLN02193 272 HSMAADEENVYVFG 285 (470)
T ss_pred eEEEEECCEEEEEC
Confidence 34456788888654
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.42 E-value=0.42 Score=38.80 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=48.0
Q ss_pred CcEEEEcccccceeecCCCCCC-CCC-ceeEEE-EE--Ec-C-CCCCCccEEEEEec--CCCceeEccccCccccc----
Q 043223 117 TNMVLWNPSTRVSRELPRPAPF-PEQ-VIRGFI-ST--IG-N-GNVSRETKVQVFSL--KNNSWKEIQYFHARIDI---- 183 (202)
Q Consensus 117 ~~~~V~NP~T~~~~~lP~~~~~-~~~-~~~~~g-~V--v~-~-~~~~~~~~~~vy~s--~t~~W~~~~~~~~~~~~---- 183 (202)
..+.++||.|++|..+++.+.. +.. ....++ .| +. . ........+++|+. ++++|..+..++.....
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 5789999999999999876642 221 111222 12 31 1 11012234555654 67799999877654211
Q ss_pred --CCcceEECCeEEEEe
Q 043223 184 --YGLGVLSNGKLHWLG 198 (202)
Q Consensus 184 --~~~~v~~~G~lywl~ 198 (202)
....+.++|.+|-+.
T Consensus 248 ~~~~~a~~~~~~Iyv~G 264 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAG 264 (346)
T ss_pred ccEEeeeEECCEEEEee
Confidence 112467899998775
No 27
>PF13964 Kelch_6: Kelch motif
Probab=93.81 E-value=0.076 Score=30.08 Aligned_cols=24 Identities=13% Similarity=0.426 Sum_probs=20.6
Q ss_pred CCccEEEEEecCCCceeEccccCc
Q 043223 156 SRETKVQVFSLKNNSWKEIQYFHA 179 (202)
Q Consensus 156 ~~~~~~~vy~s~t~~W~~~~~~~~ 179 (202)
.....+++|+.+|++|+.++.+|.
T Consensus 25 ~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 25 KYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CccccEEEEcCCCCcEEECCCCCC
Confidence 456789999999999999987764
No 28
>smart00612 Kelch Kelch domain.
Probab=93.80 E-value=0.09 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=23.8
Q ss_pred CccEEEEEecCCCceeEccccCcccccCCcceEECC
Q 043223 157 RETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNG 192 (202)
Q Consensus 157 ~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G 192 (202)
....+++|+.++++|+.++.++.... ....+.++|
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~g 47 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMPTPRS-GHGVAVING 47 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCCCccc-cceEEEeCC
Confidence 34679999999999999887665432 223344443
No 29
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.06 E-value=2.9 Score=34.49 Aligned_cols=95 Identities=18% Similarity=0.104 Sum_probs=52.7
Q ss_pred ceeCceEEEEe--CCCcEEEEccc--ccceeecCCCCC-CCCC-ceeEEE-EE--EcCCCC-------CCccEEEEEecC
Q 043223 104 GSCNGLVCIDF--DSTNMVLWNPS--TRVSRELPRPAP-FPEQ-VIRGFI-ST--IGNGNV-------SRETKVQVFSLK 167 (202)
Q Consensus 104 ~s~~Gll~~~~--~~~~~~V~NP~--T~~~~~lP~~~~-~~~~-~~~~~g-~V--v~~~~~-------~~~~~~~vy~s~ 167 (202)
+..++-|.+.. ....++++++. +++|..+|+.+. .+.. .....+ .| +..... .....+++|+..
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 44566665542 33557788765 588999987653 2221 111111 13 221110 113579999999
Q ss_pred CCceeEcccc-CcccccCCcceE-ECCeEEEEee
Q 043223 168 NNSWKEIQYF-HARIDIYGLGVL-SNGKLHWLGI 199 (202)
Q Consensus 168 t~~W~~~~~~-~~~~~~~~~~v~-~~G~lywl~~ 199 (202)
+++|+.+... |... .....+. .+|.+|-+..
T Consensus 115 ~n~W~~~~~~~p~~~-~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 115 TNSWQKLDTRSPVGL-AGHVAVSLHNGKAYITGG 147 (376)
T ss_pred CCEEEeCCCCCCCcc-cceEEEEeeCCEEEEECC
Confidence 9999998642 2221 1223334 7999998753
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.73 E-value=0.058 Score=44.60 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHhcCChhhhHhhhccccccccccCC
Q 043223 3 KLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISD 37 (202)
Q Consensus 3 ~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~ 37 (202)
.||.+++..||+-|..+++.|++.|||.|+.+..+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 59999999999999999999999999999977554
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.64 E-value=0.12 Score=28.59 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.0
Q ss_pred CCccEEEEEecCCCceeEccccC
Q 043223 156 SRETKVQVFSLKNNSWKEIQYFH 178 (202)
Q Consensus 156 ~~~~~~~vy~s~t~~W~~~~~~~ 178 (202)
.....+++|+..+++|+.++.||
T Consensus 25 ~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 25 QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SBEEEEEEEETTTTEEEEEEEES
T ss_pred ceeeeEEEEeCCCCEEEEcCCCC
Confidence 56678999999999999988765
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.52 E-value=0.042 Score=47.48 Aligned_cols=42 Identities=29% Similarity=0.468 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHH
Q 043223 1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAK 42 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~ 42 (202)
+..||.++...||..|+.+++++++.||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 357999999999999999999999999999999998866554
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=89.12 E-value=7.6 Score=33.35 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=43.4
Q ss_pred CceEEEEeCC------CcEEEEcccccceeecCCCCCC---CC-CceeEEEE-E--E-cC-CCCCCccEEEEEecCCCce
Q 043223 107 NGLVCIDFDS------TNMVLWNPSTRVSRELPRPAPF---PE-QVIRGFIS-T--I-GN-GNVSRETKVQVFSLKNNSW 171 (202)
Q Consensus 107 ~Gll~~~~~~------~~~~V~NP~T~~~~~lP~~~~~---~~-~~~~~~g~-V--v-~~-~~~~~~~~~~vy~s~t~~W 171 (202)
+.|+++.... ..+..+|+.|++|..+.+.... +. ......|- | + .. ........++||+.++.+|
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W 202 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTW 202 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccc
Confidence 5566665433 4899999999999998544331 11 11222221 2 2 11 1112567899999999999
Q ss_pred eEccc
Q 043223 172 KEIQY 176 (202)
Q Consensus 172 ~~~~~ 176 (202)
.++..
T Consensus 203 ~~~~~ 207 (482)
T KOG0379|consen 203 SELDT 207 (482)
T ss_pred eeccc
Confidence 99863
No 34
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=88.97 E-value=0.34 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=14.1
Q ss_pred CCcEEEEcccccceeecCCCC
Q 043223 116 STNMVLWNPSTRVSRELPRPA 136 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~lP~~~ 136 (202)
.+.++++|+.|++|.++|++|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 457899999999999997665
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=88.65 E-value=0.46 Score=26.57 Aligned_cols=22 Identities=14% Similarity=0.496 Sum_probs=14.3
Q ss_pred CccEEEEEecCCCceeEccccC
Q 043223 157 RETKVQVFSLKNNSWKEIQYFH 178 (202)
Q Consensus 157 ~~~~~~vy~s~t~~W~~~~~~~ 178 (202)
....+++|+.++++|++++.+|
T Consensus 27 ~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE--SS-
T ss_pred ccCCEEEEECCCCEEEECCCCC
Confidence 4456899999999999997665
No 36
>smart00612 Kelch Kelch domain.
Probab=88.30 E-value=0.82 Score=24.76 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=20.0
Q ss_pred CCcEEEEcccccceeecCCCCCCCC
Q 043223 116 STNMVLWNPSTRVSRELPRPAPFPE 140 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~lP~~~~~~~ 140 (202)
...+.++||.|.+|..+|+.+..+.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~ 38 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRS 38 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccc
Confidence 3568899999999999987765543
No 37
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=87.38 E-value=2.6 Score=33.10 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=53.4
Q ss_pred CCcEEEEcccccceeecCCCCCCCC--CceeEEEE---E--EcCCC---CCCccEEEEEecCCCceeEccc---cCcccc
Q 043223 116 STNMVLWNPSTRVSRELPRPAPFPE--QVIRGFIS---T--IGNGN---VSRETKVQVFSLKNNSWKEIQY---FHARID 182 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~lP~~~~~~~--~~~~~~g~---V--v~~~~---~~~~~~~~vy~s~t~~W~~~~~---~~~~~~ 182 (202)
..++.+.|-.|+.|..-|+.+.... .....|+| + +..+. ........-|+.+|..|+.|.. -|.. +
T Consensus 215 c~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-R 293 (392)
T KOG4693|consen 215 CDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-R 293 (392)
T ss_pred cceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-c
Confidence 5678999999999999887654422 12455666 3 22211 1334567788999999999852 2222 1
Q ss_pred cCCcceEECCeEEEEe
Q 043223 183 IYGLGVLSNGKLHWLG 198 (202)
Q Consensus 183 ~~~~~v~~~G~lywl~ 198 (202)
-++.++..+|.+|-..
T Consensus 294 RRqC~~v~g~kv~LFG 309 (392)
T KOG4693|consen 294 RRQCSVVSGGKVYLFG 309 (392)
T ss_pred cceeEEEECCEEEEec
Confidence 1556788899988654
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=86.21 E-value=1.7 Score=24.28 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=20.2
Q ss_pred CCcEEEEcccccceeecCCCCCCCC
Q 043223 116 STNMVLWNPSTRVSRELPRPAPFPE 140 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~lP~~~~~~~ 140 (202)
.+.++++||.|++|.+++..+..+.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCcc
Confidence 4578999999999999976665544
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=85.53 E-value=1.1 Score=25.15 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=18.5
Q ss_pred CCccEEEEEecCCCceeEcccc
Q 043223 156 SRETKVQVFSLKNNSWKEIQYF 177 (202)
Q Consensus 156 ~~~~~~~vy~s~t~~W~~~~~~ 177 (202)
.....+++|+.++.+|+.+..+
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cccceeEEEECCCCEEeecCCC
Confidence 4557799999999999998654
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=83.66 E-value=1.2 Score=24.99 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=20.2
Q ss_pred CCccEEEEEecCCCceeEccccCcc
Q 043223 156 SRETKVQVFSLKNNSWKEIQYFHAR 180 (202)
Q Consensus 156 ~~~~~~~vy~s~t~~W~~~~~~~~~ 180 (202)
.....+.+|+..+++|++++.+|..
T Consensus 16 ~~~nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 16 TRLNDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred CEecCEEEEECCCCEEEECCCCCCC
Confidence 4456789999999999999766654
No 41
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=83.52 E-value=2.5 Score=33.25 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCcEEEEcccccceeec------CCCCCCCCCceeEEEE---EE---cCCCCCCccEEEEEecCCCceeEccc--cCccc
Q 043223 116 STNMVLWNPSTRVSREL------PRPAPFPEQVIRGFIS---TI---GNGNVSRETKVQVFSLKNNSWKEIQY--FHARI 181 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~l------P~~~~~~~~~~~~~g~---Vv---~~~~~~~~~~~~vy~s~t~~W~~~~~--~~~~~ 181 (202)
.+-++-++|-|.+|... |....... .+-.|- |+ .+....-...+++++..|-+||.+.. .|...
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs--AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw 181 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHS--ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW 181 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCCce--eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence 34578889999999874 33222211 232332 32 11110223468899999999999863 34444
Q ss_pred ccCCcceEECCeEEEEeee
Q 043223 182 DIYGLGVLSNGKLHWLGIL 200 (202)
Q Consensus 182 ~~~~~~v~~~G~lywl~~~ 200 (202)
+.+..++..+|.+|-...+
T Consensus 182 RDFH~a~~~~~~MYiFGGR 200 (392)
T KOG4693|consen 182 RDFHTASVIDGMMYIFGGR 200 (392)
T ss_pred hhhhhhhhccceEEEeccc
Confidence 5567777888999877543
No 42
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=79.42 E-value=37 Score=28.64 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCcEEEEcccccceeecC--CCCCCCCCc-eeE-EEE-E-E---cC--CCCCCccEEEEEecCCCceeEccc
Q 043223 116 STNMVLWNPSTRVSRELP--RPAPFPEQV-IRG-FIS-T-I---GN--GNVSRETKVQVFSLKNNSWKEIQY 176 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~lP--~~~~~~~~~-~~~-~g~-V-v---~~--~~~~~~~~~~vy~s~t~~W~~~~~ 176 (202)
...++++.-.|++|-+|- ..|+.+... ... =-+ | + -+ ....+...+.+|++.|-+|..+..
T Consensus 153 YkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred hhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 567899999999999983 333333210 110 001 2 1 11 112445679999999999999863
No 43
>PF13013 F-box-like_2: F-box-like domain
Probab=69.30 E-value=2.7 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHhcCChhhhHhhhcccc
Q 043223 2 AKLPQDIVADILSRLPVKSLLRFKCVSK 29 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK 29 (202)
.+||+||+..|+..-...++...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4799999999999998777755444444
No 44
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.69 E-value=13 Score=18.34 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=19.0
Q ss_pred eeCceEEEEeCCCcEEEEcccccceee
Q 043223 105 SCNGLVCIDFDSTNMVLWNPSTRVSRE 131 (202)
Q Consensus 105 s~~Gll~~~~~~~~~~V~NP~T~~~~~ 131 (202)
..+|++.+......++.+|+.||+.+.
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 346677766667788888888877653
No 45
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=66.77 E-value=2.9 Score=33.87 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHhcCCh--------hhhHhhhccccccccccCC
Q 043223 2 AKLPQDIVADILSRLPV--------KSLLRFKCVSKPWFSLISD 37 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~--------~~l~r~r~VcK~W~~li~~ 37 (202)
+.||.+++.+|+.|..- ++.+.+..|||.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 37999999999999852 3678899999999987554
No 46
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=55.14 E-value=1.4e+02 Score=25.76 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=52.0
Q ss_pred eEeceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCC---C-c--eeEEEE-EE--cC-CCCCCccEEEEE
Q 043223 101 DIIGSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPE---Q-V--IRGFIS-TI--GN-GNVSRETKVQVF 164 (202)
Q Consensus 101 ~~~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~---~-~--~~~~g~-Vv--~~-~~~~~~~~~~vy 164 (202)
.+....+=++.+.. ..+.++|+|+.|-+|.++........ . . .++=.+ |+ .+ +. ....-+.++
T Consensus 168 s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~-~~l~D~~~l 246 (482)
T KOG0379|consen 168 SATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD-VYLNDVHIL 246 (482)
T ss_pred eEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCC-ceecceEee
Confidence 33334444555542 25689999999999999854433222 1 1 111111 22 12 22 455679999
Q ss_pred ecCCCceeEccc---cCcccccCCcceEECCeEEEEe
Q 043223 165 SLKNNSWKEIQY---FHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 165 ~s~t~~W~~~~~---~~~~~~~~~~~v~~~G~lywl~ 198 (202)
++.+..|+.+.. .|.. +.....++.+-.++++.
T Consensus 247 dl~~~~W~~~~~~g~~p~~-R~~h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 247 DLSTWEWKLLPTGGDLPSP-RSGHSLTVSGDHLLLFG 282 (482)
T ss_pred ecccceeeeccccCCCCCC-cceeeeEEECCEEEEEc
Confidence 999999996542 2222 12333445555555554
No 47
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=54.68 E-value=10 Score=29.86 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHhcCC-hhhhHhhhccccccccccCCh
Q 043223 2 AKLPQDIVADILSRLP-VKSLLRFKCVSKPWFSLISDS 38 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~p 38 (202)
.+||.+++.+||.||| -.+|.....|--.-..++.+.
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 5799999999999998 678877776654444445443
No 48
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=50.27 E-value=17 Score=23.39 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.0
Q ss_pred CCcEEEEcccccceeecC
Q 043223 116 STNMVLWNPSTRVSRELP 133 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~lP 133 (202)
..+++-+||.||+...|-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 456788999999987763
No 49
>PF15408 PH_7: Pleckstrin homology domain
Probab=47.24 E-value=5.9 Score=25.30 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=19.4
Q ss_pred hhhhHhhhccccccccccCChHHH
Q 043223 18 VKSLLRFKCVSKPWFSLISDSQFA 41 (202)
Q Consensus 18 ~~~l~r~r~VcK~W~~li~~p~F~ 41 (202)
++..+..+-|||+|-..+.+|.|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 345566778999999999999984
No 50
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=45.91 E-value=25 Score=23.43 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHhcCChhhhHhhhccc
Q 043223 2 AKLPQDIVADILSRLPVKSLLRFKCVS 28 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~Vc 28 (202)
-++|.+++.-||.++.+..|.+.-.-|
T Consensus 5 G~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 5 GDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred CCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 479999999999999999999887766
No 51
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.87 E-value=14 Score=28.63 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=21.7
Q ss_pred ceEEEEeCCCcEEEEcccccceeecCC
Q 043223 108 GLVCIDFDSTNMVLWNPSTRVSRELPR 134 (202)
Q Consensus 108 Gll~~~~~~~~~~V~NP~T~~~~~lP~ 134 (202)
+++....+...+.+|||.+++|..+|.
T Consensus 193 ~l~~~t~Dg~~~g~~~~~~~~W~~l~~ 219 (251)
T PF11932_consen 193 ALYYQTLDGSQAGVWDPATGQWQWLPD 219 (251)
T ss_pred hheeECCCccceeeecCCCCCCeECCH
Confidence 344444478889999999999999987
No 52
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=44.67 E-value=1.1e+02 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=20.9
Q ss_pred eeCceEEEEe-CCCcEEEEcccccceeec
Q 043223 105 SCNGLVCIDF-DSTNMVLWNPSTRVSREL 132 (202)
Q Consensus 105 s~~Gll~~~~-~~~~~~V~NP~T~~~~~l 132 (202)
..+|-++... ++.++.||||+.++....
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllhs 87 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLHS 87 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceeee
Confidence 4677777774 788999999996555443
No 53
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=41.65 E-value=20 Score=16.97 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=12.3
Q ss_pred EEEcccccceeecCC
Q 043223 120 VLWNPSTRVSRELPR 134 (202)
Q Consensus 120 ~V~NP~T~~~~~lP~ 134 (202)
.|||..++.|+....
T Consensus 7 ~iwn~~~~~~vvvsE 21 (24)
T PF13018_consen 7 LIWNKARGTWVVVSE 21 (24)
T ss_pred EEEECCCCeEEEEee
Confidence 689999999987654
No 54
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=37.73 E-value=60 Score=24.18 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCCeeEeceeCceEEEEeCCCcEEEEcccccce
Q 043223 97 EDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVS 129 (202)
Q Consensus 97 ~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~ 129 (202)
..++.-+.-.||-+|+.+..+..+..+|+||+-
T Consensus 30 ~sr~s~VS~~~~~~C~s~~~~~~~~vDP~Tgra 62 (263)
T PF07861_consen 30 TSRFSSVSFAGGRACLSDTAGSVYTVDPLTGRA 62 (263)
T ss_pred CceeEEEecCCceEEEecCCCceEEeccccccc
Confidence 345666777899999998888899999999554
No 55
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=35.38 E-value=61 Score=16.82 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=15.5
Q ss_pred ceeCceEEEEeCCCcEEEEcccc
Q 043223 104 GSCNGLVCIDFDSTNMVLWNPST 126 (202)
Q Consensus 104 ~s~~Gll~~~~~~~~~~V~NP~T 126 (202)
.-.+|.|.+.+....++..|+.|
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 34577877777778888888765
No 56
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=34.02 E-value=3e+02 Score=23.52 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=31.2
Q ss_pred CCCeeEeceeCceEEEEe---------CCCcEEEEcccccceeecCCC
Q 043223 97 EDDADIIGSCNGLVCIDF---------DSTNMVLWNPSTRVSRELPRP 135 (202)
Q Consensus 97 ~~~~~~~~s~~Gll~~~~---------~~~~~~V~NP~T~~~~~lP~~ 135 (202)
.....+++.-+-|++|.. ..+.++++|--|-+|..|-++
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps 225 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS 225 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC
Confidence 445678899999999873 246789999999999999444
No 57
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=32.11 E-value=20 Score=23.88 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=11.5
Q ss_pred CCCcHHHHHHHHhc
Q 043223 2 AKLPQDIVADILSR 15 (202)
Q Consensus 2 ~~LP~Dll~eIL~r 15 (202)
+.||+||-.||+..
T Consensus 7 aaLPeDiR~Evl~~ 20 (108)
T PF14377_consen 7 AALPEDIREEVLAQ 20 (108)
T ss_pred HHCCHHHHHHHHHH
Confidence 57999999999754
No 58
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=30.89 E-value=55 Score=20.62 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=17.5
Q ss_pred CceeEccccCccccc---CCcceEECCeE
Q 043223 169 NSWKEIQYFHARIDI---YGLGVLSNGKL 194 (202)
Q Consensus 169 ~~W~~~~~~~~~~~~---~~~~v~~~G~l 194 (202)
|.|-+.+..|..-.. ...||+.||-+
T Consensus 4 G~WvE~~va~Ya~e~~~l~~~GV~~ngrl 32 (79)
T PF11012_consen 4 GTWVEQGVAPYAAEEFTLNESGVFRNGRL 32 (79)
T ss_pred eEEEECCCCCccccEEEECCCcEEECCCE
Confidence 678888766654322 66788888864
No 59
>PF11900 DUF3420: Domain of unknown function (DUF3420); InterPro: IPR024228 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is about 50 amino acids in length.
Probab=30.87 E-value=36 Score=19.29 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.2
Q ss_pred CCcHHHHHHH
Q 043223 3 KLPQDIVADI 12 (202)
Q Consensus 3 ~LP~Dll~eI 12 (202)
+||.|++.+|
T Consensus 10 ~LP~eVv~kI 19 (49)
T PF11900_consen 10 ELPPEVVKKI 19 (49)
T ss_pred cCCHHHHHHH
Confidence 5888988877
No 60
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=30.31 E-value=48 Score=21.67 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCCeeEeceeCceEEEE-e----CCCcEEEEcccccceee
Q 043223 97 EDDADIIGSCNGLVCID-F----DSTNMVLWNPSTRVSRE 131 (202)
Q Consensus 97 ~~~~~~~~s~~Gll~~~-~----~~~~~~V~NP~T~~~~~ 131 (202)
..++.++.+.+||.+-. + ++.---||+|+|++.+.
T Consensus 31 I~~ikVieg~~GlFVaMPs~k~~~g~y~DI~~Pit~e~Re 70 (94)
T PRK13259 31 VHDIRVIEGNNGLFIAMPSKRTPDGEFRDIAHPINSDTRE 70 (94)
T ss_pred EeeeEEEECCCCeEEECcCcCCCCCcEEEEEccCCHHHHH
Confidence 34677888889977755 1 23344699999988764
No 61
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=30.21 E-value=41 Score=20.96 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=10.4
Q ss_pred CCcEEEE-cccccceeec
Q 043223 116 STNMVLW-NPSTRVSREL 132 (202)
Q Consensus 116 ~~~~~V~-NP~T~~~~~l 132 (202)
...|+.| ||+||+..-|
T Consensus 25 ~k~Yy~Yr~P~tGk~~~L 42 (75)
T PF09003_consen 25 GKGYYQYRNPITGKEHGL 42 (75)
T ss_dssp --SEEEEE-TTTS-EEEE
T ss_pred ceeEEEEecCCCCceeeC
Confidence 3467878 9999998755
No 62
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=30.18 E-value=34 Score=19.21 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHhcCChhh
Q 043223 2 AKLPQDIVADILSRLPVKS 20 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~ 20 (202)
+.+|+|++.++-.=|+.|+
T Consensus 6 ~~vPedlI~q~q~VLqgks 24 (53)
T PF11547_consen 6 SQVPEDLINQAQVVLQGKS 24 (53)
T ss_dssp GGS-HHHHHHHHHHSTTS-
T ss_pred ccCCHHHHHHHHHHHcCCc
Confidence 3579999999888888764
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=26.04 E-value=3.7e+02 Score=21.98 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.2
Q ss_pred CeeEeceeCceEEEEeCCCcEEEEcccccceeecCCCCCC
Q 043223 99 DADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPF 138 (202)
Q Consensus 99 ~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~lP~~~~~ 138 (202)
.+.+.+..+.-|+..+......|+++.|.....+|.....
T Consensus 68 ~~~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~p 107 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSP 107 (342)
T ss_pred eeEEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCC
Confidence 3444444566666665678899999999999999986553
No 64
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=25.51 E-value=53 Score=19.32 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=11.0
Q ss_pred CCcHHHHHHHHhcC
Q 043223 3 KLPQDIVADILSRL 16 (202)
Q Consensus 3 ~LP~Dll~eIL~rL 16 (202)
.|||||-.|+|-..
T Consensus 10 kLPDdLKrEvldY~ 23 (65)
T COG5559 10 KLPDDLKREVLDYI 23 (65)
T ss_pred HCcHHHHHHHHHHH
Confidence 58999998887544
No 65
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=24.45 E-value=54 Score=23.46 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=26.3
Q ss_pred HHHHHHHhcCChhhhHhhhccccccccccCChHHHHH
Q 043223 7 DIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKT 43 (202)
Q Consensus 7 Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~ 43 (202)
+++++=|..|.--..+||.+|-|++.++- .|...
T Consensus 110 ~~VM~~Lk~lD~VAYvRFASVYr~F~dv~---~F~e~ 143 (156)
T COG1327 110 ELVMEELKKLDEVAYVRFASVYRSFKDVD---DFEEE 143 (156)
T ss_pred HHHHHHHHhcchhhhhhhhhHhcccCCHH---HHHHH
Confidence 35667788888889999999999998764 45554
No 66
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.96 E-value=1e+02 Score=25.54 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=25.6
Q ss_pred CCccEEEEEecCCCceeEccccCcccccCCcceEECC-eEEEE
Q 043223 156 SRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNG-KLHWL 197 (202)
Q Consensus 156 ~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G-~lywl 197 (202)
.-...+..|+..+++|.+.............++..+| .+|+.
T Consensus 110 ~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~ 152 (381)
T COG3055 110 QVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFF 152 (381)
T ss_pred eEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEE
Confidence 3445688999999999998643322222333444444 56654
No 67
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=23.47 E-value=44 Score=21.41 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.5
Q ss_pred EEcccccceeecCCCC
Q 043223 121 LWNPSTRVSRELPRPA 136 (202)
Q Consensus 121 V~NP~T~~~~~lP~~~ 136 (202)
.-||.||+-..+|...
T Consensus 60 grNP~Tge~i~i~a~~ 75 (90)
T PRK10753 60 GRNPQTGKEIKIAAAN 75 (90)
T ss_pred ccCCCCCCEEEEcCCc
Confidence 3799999999998764
No 68
>COG3196 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.13 E-value=67 Score=22.82 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=14.4
Q ss_pred CCcHHHHHHHHhcCCh
Q 043223 3 KLPQDIVADILSRLPV 18 (202)
Q Consensus 3 ~LP~Dll~eIL~rLP~ 18 (202)
..|+|++.|++.|-|.
T Consensus 83 ~vp~d~~~Ev~ERTPG 98 (183)
T COG3196 83 DVPEDVTEEVLERTPG 98 (183)
T ss_pred CChHHHHHHHHhcCCC
Confidence 5789999999999995
No 69
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.95 E-value=4.1e+02 Score=21.51 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=38.4
Q ss_pred eCCCcEEEEcccccceeecCCCCCCCCCceeEEEE-------EE--cCCCCCCccEEEEEecCCCceeEccccC
Q 043223 114 FDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS-------TI--GNGNVSRETKVQVFSLKNNSWKEIQYFH 178 (202)
Q Consensus 114 ~~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~-------Vv--~~~~~~~~~~~~vy~s~t~~W~~~~~~~ 178 (202)
.....++|+|+.|++....=.++..++ .+|.|. ++ ++......=.+-||+.. +..++++.++
T Consensus 25 RPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~ 95 (305)
T PF07433_consen 25 RPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFP 95 (305)
T ss_pred CCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEec
Confidence 356778999999999886544454455 555553 23 22111344568899998 5666665444
No 70
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=22.67 E-value=47 Score=21.34 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=12.7
Q ss_pred EcccccceeecCCCC
Q 043223 122 WNPSTRVSRELPRPA 136 (202)
Q Consensus 122 ~NP~T~~~~~lP~~~ 136 (202)
-||.||+-..+|...
T Consensus 61 rNP~Tge~i~i~a~~ 75 (90)
T PRK10664 61 RNPQTGKEITIAAAK 75 (90)
T ss_pred cCCCCCCEEEEcCcc
Confidence 599999999998543
No 71
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=22.62 E-value=70 Score=20.78 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=16.1
Q ss_pred CcHHHHHHHHhcCChhhhHhh
Q 043223 4 LPQDIVADILSRLPVKSLLRF 24 (202)
Q Consensus 4 LP~Dll~eIL~rLP~~~l~r~ 24 (202)
+|++.+++|..++|+.++++-
T Consensus 1 ~~~~~~~~i~~~~~i~~v~~~ 21 (97)
T PF01807_consen 1 IKKEFIEEIKSRIDIVDVIER 21 (97)
T ss_dssp S-HHHHHHHHHCS-HHHHHCC
T ss_pred CCHHHHHHHHHhCCHHHHHHH
Confidence 578899999999999888743
No 72
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=1.1e+02 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=20.0
Q ss_pred CccEEEEEecCCCceeEccccCcccc
Q 043223 157 RETKVQVFSLKNNSWKEIQYFHARID 182 (202)
Q Consensus 157 ~~~~~~vy~s~t~~W~~~~~~~~~~~ 182 (202)
....-+||-...++|+.+..+|..+.
T Consensus 316 K~w~~~Vy~~d~g~Wk~~GeLp~~l~ 341 (381)
T COG3055 316 KSWNSEVYIFDNGSWKIVGELPQGLA 341 (381)
T ss_pred hhhhceEEEEcCCceeeecccCCCcc
Confidence 33456777777999999999998643
No 73
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=22.21 E-value=31 Score=20.49 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=17.4
Q ss_pred HhcCChhhhHh--hhccccccccccCChHHHH
Q 043223 13 LSRLPVKSLLR--FKCVSKPWFSLISDSQFAK 42 (202)
Q Consensus 13 L~rLP~~~l~r--~r~VcK~W~~li~~p~F~~ 42 (202)
|..+|+..+++ ++.....|+.++-+|.+++
T Consensus 15 LIf~pLgyl~~r~~~r~r~~~r~~~~~pRYlK 46 (62)
T TIGR03493 15 LIFFPLGYLARRSLRRIRTTLRLRLASPRYLK 46 (62)
T ss_pred HHHHhHHHHHHhhhHHHHHHHHHhcCCccccC
Confidence 45679888754 4444444555555666543
No 74
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=21.11 E-value=1.2e+02 Score=26.73 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=26.1
Q ss_pred eceeCceEEEEeCCCcEEEEcccccceeec
Q 043223 103 IGSCNGLVCIDFDSTNMVLWNPSTRVSREL 132 (202)
Q Consensus 103 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~l 132 (202)
+..+||||++....+.+-.|+|-+++....
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhhee
Confidence 678999999998789999999999887654
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=21.07 E-value=99 Score=25.58 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=13.9
Q ss_pred CCCcEEEEcccccceee
Q 043223 115 DSTNMVLWNPSTRVSRE 131 (202)
Q Consensus 115 ~~~~~~V~NP~T~~~~~ 131 (202)
.+..+.||||.|++-..
T Consensus 210 ~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLH 226 (399)
T ss_pred cCceEEEEecCCCceeE
Confidence 67889999999987543
No 76
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=20.76 E-value=82 Score=18.31 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=11.6
Q ss_pred CCCCcHHHHHHHHhcC
Q 043223 1 MAKLPQDIVADILSRL 16 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rL 16 (202)
|.++|+|++.+|-+++
T Consensus 39 ~~~~~~el~~~ir~~I 54 (57)
T PF06348_consen 39 MTEIPEELREKIRSAI 54 (57)
T ss_pred CccCCHHHHHHHHHHh
Confidence 4568889888886543
No 77
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=20.13 E-value=44 Score=17.65 Aligned_cols=10 Identities=30% Similarity=0.182 Sum_probs=7.4
Q ss_pred Ecccccceee
Q 043223 122 WNPSTRVSRE 131 (202)
Q Consensus 122 ~NP~T~~~~~ 131 (202)
.||+|++-..
T Consensus 12 ~NP~Tgr~Ik 21 (37)
T PF08793_consen 12 VNPITGRKIK 21 (37)
T ss_pred CCCCCCCcCC
Confidence 6899987654
Done!