Query 043223
Match_columns 202
No_of_seqs 163 out of 1315
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e31_A FBS1, F-box only protei 99.3 4.6E-13 1.6E-17 104.3 3.9 48 1-48 51-99 (297)
2 1fs1_A SKP2 F-BOX, cyclin A/CD 99.3 5.4E-13 1.9E-17 77.7 3.1 41 1-41 9-49 (53)
3 3l2o_B F-box only protein 4; s 98.4 1E-07 3.5E-12 73.8 1.8 48 2-49 6-53 (312)
4 3v7d_B Cell division control p 98.2 2.6E-07 8.9E-12 75.8 1.9 43 2-44 16-59 (464)
5 2ovr_B FBW7, F-BOX/WD repeat p 98.1 1.1E-06 3.9E-11 71.7 3.7 46 1-46 19-64 (445)
6 2ast_B S-phase kinase-associat 98.1 1.3E-06 4.3E-11 69.1 2.1 39 1-39 9-47 (336)
7 1p22_A F-BOX/WD-repeat protein 98.0 6.4E-07 2.2E-11 73.1 -0.4 45 2-46 12-60 (435)
8 2p1m_B Transport inhibitor res 97.7 8.5E-06 2.9E-10 69.1 2.1 34 1-34 6-40 (594)
9 3ogk_B Coronatine-insensitive 97.4 4.1E-05 1.4E-09 64.9 1.8 33 2-34 14-47 (592)
10 2xn4_A Kelch-like protein 2; s 97.4 0.0029 9.8E-08 48.8 12.2 93 104-198 58-162 (302)
11 3ii7_A Kelch-like protein 7; p 97.3 0.0032 1.1E-07 48.6 11.8 93 104-198 52-156 (306)
12 2vpj_A Kelch-like protein 12; 97.3 0.0049 1.7E-07 47.4 12.6 93 104-198 59-166 (301)
13 1zgk_A Kelch-like ECH-associat 97.3 0.0029 9.9E-08 49.1 11.2 80 117-198 90-175 (308)
14 4asc_A Kelch repeat and BTB do 97.3 0.0056 1.9E-07 47.5 12.8 94 103-199 94-204 (315)
15 4asc_A Kelch repeat and BTB do 97.3 0.0049 1.7E-07 47.8 12.4 94 103-199 144-251 (315)
16 3ii7_A Kelch-like protein 7; p 97.3 0.0045 1.5E-07 47.8 11.9 93 104-199 146-255 (306)
17 2vpj_A Kelch-like protein 12; 97.2 0.0077 2.6E-07 46.3 12.8 92 104-198 156-260 (301)
18 1zgk_A Kelch-like ECH-associat 97.2 0.0078 2.7E-07 46.6 12.6 92 104-198 118-222 (308)
19 2woz_A Kelch repeat and BTB do 97.2 0.0048 1.6E-07 48.0 11.1 91 105-198 156-260 (318)
20 2xn4_A Kelch-like protein 2; s 97.1 0.012 4E-07 45.3 12.8 93 103-198 151-258 (302)
21 2uvk_A YJHT; unknown function, 97.0 0.007 2.4E-07 47.7 10.4 81 117-198 86-207 (357)
22 2woz_A Kelch repeat and BTB do 96.9 0.0054 1.8E-07 47.7 9.1 78 119-198 80-165 (318)
23 2uvk_A YJHT; unknown function, 96.7 0.019 6.5E-07 45.2 11.1 96 104-199 16-126 (357)
24 2zwa_A Leucine carboxyl methyl 95.8 0.042 1.4E-06 47.8 9.1 92 106-198 396-507 (695)
25 1k3i_A Galactose oxidase precu 95.4 0.022 7.6E-07 49.0 5.9 79 118-199 220-305 (656)
26 1k3i_A Galactose oxidase precu 95.1 0.13 4.4E-06 44.3 9.6 70 105-175 251-330 (656)
27 2zwa_A Leucine carboxyl methyl 93.5 0.54 1.8E-05 40.8 10.1 93 106-198 499-614 (695)
28 2kwv_A RAD30 homolog B, DNA po 69.3 2.5 8.7E-05 22.6 1.6 16 2-17 22-37 (48)
29 2dk7_A Transcription elongatio 53.5 20 0.00069 21.3 3.7 27 109-135 22-48 (73)
30 4ggc_A P55CDC, cell division c 49.9 47 0.0016 24.3 6.5 27 105-132 34-60 (318)
31 4gga_A P55CDC, cell division c 45.6 62 0.0021 25.3 6.9 28 105-133 114-141 (420)
32 3s3x_D Psalmotoxin-1; acid-sen 31.8 22 0.00075 17.2 1.3 22 104-126 15-36 (37)
33 2agh_C Zinc finger protein HRX 28.1 38 0.0013 15.9 1.7 15 3-17 6-20 (31)
34 1tns_A MU-transposase; DNA-bin 24.9 39 0.0013 20.2 1.8 17 1-17 50-66 (76)
35 1d0q_A DNA primase; zinc-bindi 23.0 59 0.002 20.4 2.5 22 2-23 3-24 (103)
36 3enb_A PRE-mRNA-processing-spl 20.1 69 0.0024 23.2 2.6 16 116-131 36-51 (222)
No 1
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=99.34 E-value=4.6e-13 Score=104.30 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHhcCChhhhH-hhhccccccccccCChHHHHHHHhhc
Q 043223 1 MAKLPQDIVADILSRLPVKSLL-RFKCVSKPWFSLISDSQFAKTQLKQA 48 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~-r~r~VcK~W~~li~~p~F~~~~~~~~ 48 (202)
|+.||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.++.+.
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 5689999999999999999999 99999999999999999999998775
No 2
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.33 E-value=5.4e-13 Score=77.72 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHH
Q 043223 1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFA 41 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~ 41 (202)
++.||+|++.+||++||.+++.++++|||+|+.++.++.|-
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence 46899999999999999999999999999999999998764
No 3
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.36 E-value=1e-07 Score=73.81 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHhhcc
Q 043223 2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAK 49 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~ 49 (202)
+.||+|++..||+.|++++|+++.+|||+||.+.+++..-+.++.+..
T Consensus 6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 469999999999999999999999999999999999998888777654
No 4
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.25 E-value=2.6e-07 Score=75.77 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHhcCChhhhHhhhccccccccccCC-hHHHHHH
Q 043223 2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISD-SQFAKTQ 44 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~-p~F~~~~ 44 (202)
+.||+|++.+||+.||+++|+++..|||.|+.++.+ +..-+..
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~ 59 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 59 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 469999999999999999999999999999999998 6554433
No 5
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.15 E-value=1.1e-06 Score=71.72 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHh
Q 043223 1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLK 46 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~ 46 (202)
++.||+|++.+||+.|++++|.++.+|||+|+.++.++.+-+....
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 4679999999999999999999999999999999999887775553
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.05 E-value=1.3e-06 Score=69.05 Aligned_cols=39 Identities=33% Similarity=0.600 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChH
Q 043223 1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQ 39 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~ 39 (202)
++.||+|++.+||.+|+.+++.+++.|||+|+.++.+|.
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~ 47 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES 47 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence 468999999999999999999999999999999987654
No 7
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.01 E-value=6.4e-07 Score=73.13 Aligned_cols=45 Identities=36% Similarity=0.527 Sum_probs=39.2
Q ss_pred CCCcHH----HHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHh
Q 043223 2 AKLPQD----IVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLK 46 (202)
Q Consensus 2 ~~LP~D----ll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~ 46 (202)
+.||+| |+.+||+.|++++|.++.+|||+|+.++.++.+-+....
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~ 60 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE 60 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 459999 999999999999999999999999999988776554443
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.75 E-value=8.5e-06 Score=69.09 Aligned_cols=34 Identities=18% Similarity=0.469 Sum_probs=29.4
Q ss_pred CCCCcHHHHHHHHhcCC-hhhhHhhhccccccccc
Q 043223 1 MAKLPQDIVADILSRLP-VKSLLRFKCVSKPWFSL 34 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~l 34 (202)
++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 36799999999999999 99999999999999987
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.42 E-value=4.1e-05 Score=64.91 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhcC-ChhhhHhhhccccccccc
Q 043223 2 AKLPQDIVADILSRL-PVKSLLRFKCVSKPWFSL 34 (202)
Q Consensus 2 ~~LP~Dll~eIL~rL-P~~~l~r~r~VcK~W~~l 34 (202)
+.||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 369999999999999 899999999999999876
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.41 E-value=0.0029 Score=48.81 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=60.9
Q ss_pred ceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCceeE-EE-E--EE--cCCCCCCccEEEEEecCCCce
Q 043223 104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRG-FI-S--TI--GNGNVSRETKVQVFSLKNNSW 171 (202)
Q Consensus 104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~-~g-~--Vv--~~~~~~~~~~~~vy~s~t~~W 171 (202)
...+|.|++.. ....+.++||.|++|..+|+.+..+...... ++ . |+ .+.. .....+++|+..+++|
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEW 136 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEE
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeE
Confidence 34466666552 2467999999999999998776654321111 11 1 22 1222 3446799999999999
Q ss_pred eEccccCcccccCCcceEECCeEEEEe
Q 043223 172 KEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
+.++.+|... .....+.++|.+|-+.
T Consensus 137 ~~~~~~p~~r-~~~~~~~~~~~iyv~G 162 (302)
T 2xn4_A 137 FHVAPMNTRR-SSVGVGVVGGLLYAVG 162 (302)
T ss_dssp EEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred eecCCCCCcc-cCceEEEECCEEEEEe
Confidence 9998776542 2445567889888764
No 11
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.35 E-value=0.0032 Score=48.59 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=61.8
Q ss_pred ceeCceEEEEe-----CCCcEEEEcccccceeecCCCCCCCCCc-eeEEE-EE--Ec--C-CCCCCccEEEEEecCCCce
Q 043223 104 GSCNGLVCIDF-----DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGFI-ST--IG--N-GNVSRETKVQVFSLKNNSW 171 (202)
Q Consensus 104 ~s~~Gll~~~~-----~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g-~V--v~--~-~~~~~~~~~~vy~s~t~~W 171 (202)
...+|.|++.. ....+.++||.|++|..+|+.+..+... ...++ .| +. + .. .....+++|+..+++|
T Consensus 52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGN-SALYLFECYDTRTESW 130 (306)
T ss_dssp EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTB-SCCCCEEEEETTTTEE
T ss_pred EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCC-cEeeeEEEEeCCCCce
Confidence 34566666552 2478999999999999998766554321 11111 12 21 1 22 4456799999999999
Q ss_pred eEccccCcccccCCcceEECCeEEEEe
Q 043223 172 KEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
+.++.+|... .....+.++|.+|-+.
T Consensus 131 ~~~~~~p~~r-~~~~~~~~~~~iyv~G 156 (306)
T 3ii7_A 131 HTKPSMLTQR-CSHGMVEANGLIYVCG 156 (306)
T ss_dssp EEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred EeCCCCcCCc-ceeEEEEECCEEEEEC
Confidence 9998776553 3445677899998775
No 12
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.33 E-value=0.0049 Score=47.40 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=60.7
Q ss_pred ceeCceEEEEe------CCCcEEEEcccccc---eeecCCCCCCCCCcee-EE-EEE--Ec--CCCCCCccEEEEEecCC
Q 043223 104 GSCNGLVCIDF------DSTNMVLWNPSTRV---SRELPRPAPFPEQVIR-GF-IST--IG--NGNVSRETKVQVFSLKN 168 (202)
Q Consensus 104 ~s~~Gll~~~~------~~~~~~V~NP~T~~---~~~lP~~~~~~~~~~~-~~-g~V--v~--~~~~~~~~~~~vy~s~t 168 (202)
...+|.|++.. ....++++||.|++ |..+++.+..+..... .+ +.| +. ... .....+++|+..+
T Consensus 59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNI 137 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTT
T ss_pred EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCC
Confidence 34566665542 24679999999999 9999877665442111 11 112 21 122 3356899999999
Q ss_pred CceeEccccCcccccCCcceEECCeEEEEe
Q 043223 169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
++|+.++.+|... .....+.++|.+|-+.
T Consensus 138 ~~W~~~~~~p~~r-~~~~~~~~~~~iyv~G 166 (301)
T 2vpj_A 138 DQWSMLGDMQTAR-EGAGLVVASGVIYCLG 166 (301)
T ss_dssp TEEEEEEECSSCC-BSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCc-ccceEEEECCEEEEEC
Confidence 9999997766442 2445667899998774
No 13
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.32 E-value=0.0029 Score=49.05 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=53.7
Q ss_pred CcEEEEcccccceeecCCCCCCCCCce-eEEE-EE--Ec--CCCCCCccEEEEEecCCCceeEccccCcccccCCcceEE
Q 043223 117 TNMVLWNPSTRVSRELPRPAPFPEQVI-RGFI-ST--IG--NGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLS 190 (202)
Q Consensus 117 ~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~g-~V--v~--~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~ 190 (202)
..++++||.|++|..+|+.+..+.... ..++ .| +. ... .....+++|+..+++|+.+..+|... .....+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccc-cceEEEEE
Confidence 579999999999999987766543211 1111 12 21 111 23457999999999999998766543 24455677
Q ss_pred CCeEEEEe
Q 043223 191 NGKLHWLG 198 (202)
Q Consensus 191 ~G~lywl~ 198 (202)
+|.+|-+.
T Consensus 168 ~~~iyv~G 175 (308)
T 1zgk_A 168 NRLLYAVG 175 (308)
T ss_dssp TTEEEEEC
T ss_pred CCEEEEEe
Confidence 99888764
No 14
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.31 E-value=0.0056 Score=47.55 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=62.4
Q ss_pred eceeCceEEEEe---------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec---CCCCCCccEEEEEe
Q 043223 103 IGSCNGLVCIDF---------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG---NGNVSRETKVQVFS 165 (202)
Q Consensus 103 ~~s~~Gll~~~~---------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~---~~~~~~~~~~~vy~ 165 (202)
....+|.|.+.. ....+.++||.|++|..+++.+..+... ...-+ | +. ... .....+++|+
T Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~-~~~~~~~~yd 171 (315)
T 4asc_A 94 LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLSHMDLVYVIGGKGSDR-KCLNKMCVYD 171 (315)
T ss_dssp EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCTTS-CBCCCEEEEE
T ss_pred EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEEECCEEEEEeCCCCCC-cccceEEEEe
Confidence 344566666552 1357999999999999998776554321 11112 2 31 222 4456899999
Q ss_pred cCCCceeEccccCcccccCCcceEECCeEEEEee
Q 043223 166 LKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 166 s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
..+++|+.+..+|... .....+.++|.+|-+..
T Consensus 172 ~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG 204 (315)
T 4asc_A 172 PKKFEWKELAPMQTAR-SLFGATVHDGRIIVAAG 204 (315)
T ss_dssp TTTTEEEECCCCSSCC-BSCEEEEETTEEEEEEE
T ss_pred CCCCeEEECCCCCCch-hceEEEEECCEEEEEec
Confidence 9999999998766542 24456678999987753
No 15
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.30 E-value=0.0049 Score=47.84 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=61.8
Q ss_pred eceeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE-----EE--cCCCCCCccEEEEEecCC
Q 043223 103 IGSCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS-----TI--GNGNVSRETKVQVFSLKN 168 (202)
Q Consensus 103 ~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~-----Vv--~~~~~~~~~~~~vy~s~t 168 (202)
....+|-|.+.. ....+.++||.|++|..+++.+..+... ...-+ |+ .... .....+++|+..+
T Consensus 144 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~ 221 (315)
T 4asc_A 144 VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF-GATVHDGRIIVAAGVTDT-GLTSSAEVYSITD 221 (315)
T ss_dssp EEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEEEEECSS-SEEEEEEEEETTT
T ss_pred EEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce-EEEEECCEEEEEeccCCC-CccceEEEEECCC
Confidence 334666666553 1467999999999999998776554321 11111 22 1222 3456799999999
Q ss_pred CceeEccccCcccccCCcceEECCeEEEEee
Q 043223 169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
++|+.++.+|... .....+.++|.+|-+..
T Consensus 222 ~~W~~~~~~p~~r-~~~~~~~~~~~l~v~GG 251 (315)
T 4asc_A 222 NKWAPFEAFPQER-SSLSLVSLVGTLYAIGG 251 (315)
T ss_dssp TEEEEECCCSSCC-BSCEEEEETTEEEEEEE
T ss_pred CeEEECCCCCCcc-cceeEEEECCEEEEECC
Confidence 9999998766553 24455678998887753
No 16
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.27 E-value=0.0045 Score=47.78 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=61.4
Q ss_pred ceeCceEEEEe------C----CCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEec
Q 043223 104 GSCNGLVCIDF------D----STNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSL 166 (202)
Q Consensus 104 ~s~~Gll~~~~------~----~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s 166 (202)
...+|-|.+.. . ...+.++||.|++|..+++.+..+.. ....-+ | +. +.. .....+++|+.
T Consensus 146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~ 223 (306)
T 3ii7_A 146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFVKDKIFAVGGQNGL-GGLDNVEYYDI 223 (306)
T ss_dssp EEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETT-EEBCCEEEEET
T ss_pred EEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEECCEEEEEeCCCCC-CCCceEEEeeC
Confidence 44577776653 1 56799999999999999876655432 111111 2 21 111 23467999999
Q ss_pred CCCceeEccccCcccccCCcceEECCeEEEEee
Q 043223 167 KNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 167 ~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
.+++|+.+..+|... .....+.++|.+|-+..
T Consensus 224 ~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG 255 (306)
T 3ii7_A 224 KLNEWKMVSPMPWKG-VTVKCAAVGSIVYVLAG 255 (306)
T ss_dssp TTTEEEECCCCSCCB-SCCEEEEETTEEEEEEC
T ss_pred CCCcEEECCCCCCCc-cceeEEEECCEEEEEeC
Confidence 999999998776543 24455677898887753
No 17
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.23 E-value=0.0077 Score=46.27 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=60.8
Q ss_pred ceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecCCCc
Q 043223 104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLKNNS 170 (202)
Q Consensus 104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~t~~ 170 (202)
...+|-|.+.. ....+.++||.|++|..+++.+..+.. ....-+ | +. +.. .....+++|+.++++
T Consensus 156 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG-AGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTE
T ss_pred EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-ceEEEECCEEEEEeCCCCC-cccceEEEEeCCCCc
Confidence 34566666652 246799999999999999876655432 111111 2 31 121 335679999999999
Q ss_pred eeEccccCcccccCCcceEECCeEEEEe
Q 043223 171 WKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 171 W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
|+.+..+|... .....+.++|.+|-+.
T Consensus 234 W~~~~~~p~~r-~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 234 WTTVTSMTTPR-CYVGATVLRGRLYAIA 260 (301)
T ss_dssp EEEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred EEECCCCCCcc-cceeEEEECCEEEEEc
Confidence 99998766553 2444567788888765
No 18
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.21 E-value=0.0078 Score=46.59 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=61.1
Q ss_pred ceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecCCCc
Q 043223 104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLKNNS 170 (202)
Q Consensus 104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~t~~ 170 (202)
...+|-|.+.. ....+.++||.|++|..+++.+..+... ...-+ | +. +.. .....+++|+..+++
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNE 195 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSS-CBCCCEEEEETTTTE
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEECCEEEEEeCCCCC-CcCceEEEEeCCCCe
Confidence 34567666652 2467999999999999998766554321 11111 2 31 222 335679999999999
Q ss_pred eeEccccCcccccCCcceEECCeEEEEe
Q 043223 171 WKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 171 W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
|+.+..+|... .....+.++|.+|-+.
T Consensus 196 W~~~~~~p~~r-~~~~~~~~~~~iyv~G 222 (308)
T 1zgk_A 196 WRMITAMNTIR-SGAGVCVLHNCIYAAG 222 (308)
T ss_dssp EEECCCCSSCC-BSCEEEEETTEEEEEC
T ss_pred EeeCCCCCCcc-ccceEEEECCEEEEEe
Confidence 99998766543 2445567799888775
No 19
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.17 E-value=0.0048 Score=48.00 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=59.9
Q ss_pred eeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecCCCc
Q 043223 105 SCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLKNNS 170 (202)
Q Consensus 105 s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~t~~ 170 (202)
..+|.|.+.. ....+.++||.|++|..+++.+..+.... ..-+ | +. ... .....+++|+..+++
T Consensus 156 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 156 SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFG-VAIHKGKIVIAGGVTED-GLSASVEAFDLKTNK 233 (318)
T ss_dssp EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEEEEEETT-EEEEEEEEEETTTCC
T ss_pred EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccce-EEEECCEEEEEcCcCCC-CccceEEEEECCCCe
Confidence 3677666552 24579999999999999987665543211 1111 2 21 111 234679999999999
Q ss_pred eeEccccCcccccCCcceEECCeEEEEe
Q 043223 171 WKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 171 W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
|+.+..+|... .....+.++|.+|-+.
T Consensus 234 W~~~~~~p~~r-~~~~~~~~~~~i~v~G 260 (318)
T 2woz_A 234 WEVMTEFPQER-SSISLVSLAGSLYAIG 260 (318)
T ss_dssp EEECCCCSSCC-BSCEEEEETTEEEEEC
T ss_pred EEECCCCCCcc-cceEEEEECCEEEEEC
Confidence 99998776643 2445567888888764
No 20
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.13 E-value=0.012 Score=45.32 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=60.9
Q ss_pred eceeCceEEEEe----C----CCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecC
Q 043223 103 IGSCNGLVCIDF----D----STNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLK 167 (202)
Q Consensus 103 ~~s~~Gll~~~~----~----~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~ 167 (202)
....+|-|.+.. . ...+.++||.|++|..+++.+..+... ...-+ | +. +.. .....+++|+..
T Consensus 151 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~ 228 (302)
T 2xn4_A 151 VGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVLNNLLYAVGGHDGP-LVRKSVEVYDPT 228 (302)
T ss_dssp EEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCBSSS-SBCCCEEEEETT
T ss_pred EEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEEECCEEEEECCCCCC-cccceEEEEeCC
Confidence 344677766652 1 457999999999999998766554321 11111 2 32 221 234679999999
Q ss_pred CCceeEccccCcccccCCcceEECCeEEEEe
Q 043223 168 NNSWKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 168 t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
+++|+.+..+|... .....+.++|.+|-+.
T Consensus 229 ~~~W~~~~~~~~~r-~~~~~~~~~~~i~v~G 258 (302)
T 2xn4_A 229 TNAWRQVADMNMCR-RNAGVCAVNGLLYVVG 258 (302)
T ss_dssp TTEEEEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred CCCEeeCCCCCCcc-ccCeEEEECCEEEEEC
Confidence 99999998766543 2344567788888775
No 21
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.97 E-value=0.007 Score=47.75 Aligned_cols=81 Identities=15% Similarity=0.013 Sum_probs=53.1
Q ss_pred CcEEEEcccccceeecCCCC-CCCCCceeEEEE---E--EcCCCC-----------------------------------
Q 043223 117 TNMVLWNPSTRVSRELPRPA-PFPEQVIRGFIS---T--IGNGNV----------------------------------- 155 (202)
Q Consensus 117 ~~~~V~NP~T~~~~~lP~~~-~~~~~~~~~~g~---V--v~~~~~----------------------------------- 155 (202)
..+.++||.|++|..+++.+ ..+.. ....-+ | +.....
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAG-HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY 164 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSS-EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCccccc-ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence 57999999999999998766 33332 111112 2 211110
Q ss_pred CCccEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEe
Q 043223 156 SRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLG 198 (202)
Q Consensus 156 ~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~ 198 (202)
.....+++|+..+++|+.+..+|.........+.++|.+|-+.
T Consensus 165 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~G 207 (357)
T 2uvk_A 165 FFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLIN 207 (357)
T ss_dssp CCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEEC
T ss_pred CCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEe
Confidence 0236899999999999999877754333355667888888764
No 22
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.91 E-value=0.0054 Score=47.70 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=53.1
Q ss_pred EEEEcccccceeecCCCCCCCCCcee-EEE-E--EE--cC--CCCCCccEEEEEecCCCceeEccccCcccccCCcceEE
Q 043223 119 MVLWNPSTRVSRELPRPAPFPEQVIR-GFI-S--TI--GN--GNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLS 190 (202)
Q Consensus 119 ~~V~NP~T~~~~~lP~~~~~~~~~~~-~~g-~--Vv--~~--~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~ 190 (202)
++++||.|++|..+|+.+..+..... .++ . |+ .. .. .....+++|+..+++|+.++.+|... .....+.+
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTE-ASLDSVLCYDPVAAKWSEVKNLPIKV-YGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTC-CEEEEEEEEETTTTEEEEECCCSSCE-ESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCC-cccceEEEEeCCCCCEeECCCCCCcc-cccEEEEE
Confidence 88999999999999877665442111 111 1 22 11 22 34567999999999999998776553 24456678
Q ss_pred CCeEEEEe
Q 043223 191 NGKLHWLG 198 (202)
Q Consensus 191 ~G~lywl~ 198 (202)
+|.+|-+.
T Consensus 158 ~~~iyv~G 165 (318)
T 2woz_A 158 NGMIYCLG 165 (318)
T ss_dssp TTEEEEEC
T ss_pred CCEEEEEc
Confidence 99998775
No 23
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.72 E-value=0.019 Score=45.21 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=60.2
Q ss_pred ceeCceEEEEe--CCCcEEEEccc--ccceeecCCCC-CCCCCc-eeEEE-EE--EcCC------CCCCccEEEEEecCC
Q 043223 104 GSCNGLVCIDF--DSTNMVLWNPS--TRVSRELPRPA-PFPEQV-IRGFI-ST--IGNG------NVSRETKVQVFSLKN 168 (202)
Q Consensus 104 ~s~~Gll~~~~--~~~~~~V~NP~--T~~~~~lP~~~-~~~~~~-~~~~g-~V--v~~~------~~~~~~~~~vy~s~t 168 (202)
...+|.|.+.. ....++++||. +++|..+|+.+ ..+... ...++ .| +... .......+++|+..+
T Consensus 16 ~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 16 AIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp EEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred EEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 34477776653 45689999998 59999998776 443321 11111 12 2111 002346799999999
Q ss_pred CceeEccccCcccccCCcceEECCeEEEEee
Q 043223 169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLGI 199 (202)
Q Consensus 169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~ 199 (202)
++|+.+..++...+.....+..+|.+|-+..
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG 126 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG 126 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEEC
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeC
Confidence 9999998766222223445678999998753
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.83 E-value=0.042 Score=47.79 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=56.8
Q ss_pred eCceEEEEe-----CCCcEEEEcccccceeecC-C-----CCCCCC-CceeEE---E--EEEc--CCCCCCccEEEEEec
Q 043223 106 CNGLVCIDF-----DSTNMVLWNPSTRVSRELP-R-----PAPFPE-QVIRGF---I--STIG--NGNVSRETKVQVFSL 166 (202)
Q Consensus 106 ~~Gll~~~~-----~~~~~~V~NP~T~~~~~lP-~-----~~~~~~-~~~~~~---g--~Vv~--~~~~~~~~~~~vy~s 166 (202)
.+|.|++.. ....++++||.|++|..++ + .+..+. .....+ | ||+. .........+++|+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 455555542 2457999999999999998 4 222222 112223 1 2332 111023467999999
Q ss_pred CCCceeEccccCcccccCCcceEE-CCeEEEEe
Q 043223 167 KNNSWKEIQYFHARIDIYGLGVLS-NGKLHWLG 198 (202)
Q Consensus 167 ~t~~W~~~~~~~~~~~~~~~~v~~-~G~lywl~ 198 (202)
.+++|+.++.+|... .....+.+ +|.+|-+.
T Consensus 476 ~t~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~G 507 (695)
T 2zwa_A 476 KTREWSMIKSLSHTR-FRHSACSLPDGNVLILG 507 (695)
T ss_dssp TTTEEEECCCCSBCC-BSCEEEECTTSCEEEEC
T ss_pred CCCcEEECCCCCCCc-ccceEEEEcCCEEEEEC
Confidence 999999998777543 23444554 88888764
No 25
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.43 E-value=0.022 Score=49.01 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=50.3
Q ss_pred cEEEEcccccceeecCCCCCCCCCceeEEEE-----EE-cCCCCCCccEEEEEecCCCceeEccccCcccccCCcceEE-
Q 043223 118 NMVLWNPSTRVSRELPRPAPFPEQVIRGFIS-----TI-GNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLS- 190 (202)
Q Consensus 118 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~-----Vv-~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~- 190 (202)
.+.++||.|++|..++..+..+.....+..+ |+ ..+. ....+++|+..+++|+.+..++... .....+.+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~--~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~ 296 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN--DAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMS 296 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS--STTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECT
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC--CCCceEEecCcCCceeECCCCCccc-cccceEEec
Confidence 5899999999999997654433221222211 32 1121 1236999999999999997766542 23344566
Q ss_pred CCeEEEEee
Q 043223 191 NGKLHWLGI 199 (202)
Q Consensus 191 ~G~lywl~~ 199 (202)
+|.+|-+..
T Consensus 297 dg~iyv~GG 305 (656)
T 1k3i_A 297 DGRVFTIGG 305 (656)
T ss_dssp TSCEEEECC
T ss_pred CCeEEEEeC
Confidence 899887754
No 26
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.10 E-value=0.13 Score=44.25 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=47.1
Q ss_pred eeCceEEEEe--CCCcEEEEcccccceeecCCCCCCCCCce-eEE--EE--EEcC---CCCCCccEEEEEecCCCceeEc
Q 043223 105 SCNGLVCIDF--DSTNMVLWNPSTRVSRELPRPAPFPEQVI-RGF--IS--TIGN---GNVSRETKVQVFSLKNNSWKEI 174 (202)
Q Consensus 105 s~~Gll~~~~--~~~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~--g~--Vv~~---~~~~~~~~~~vy~s~t~~W~~~ 174 (202)
..+|.|++.. ....+.++||.|++|..+++++..+.... ..+ |. |+.. .. .....+|+|+..+++|+.+
T Consensus 251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~-~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG-VFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSS-SCCCCEEEEETTTTEEEEE
T ss_pred CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCC-cccccceEeCCCCCcceeC
Confidence 4577777663 34589999999999999987766544311 112 12 2321 11 3446799999999999997
Q ss_pred c
Q 043223 175 Q 175 (202)
Q Consensus 175 ~ 175 (202)
.
T Consensus 330 ~ 330 (656)
T 1k3i_A 330 P 330 (656)
T ss_dssp T
T ss_pred C
Confidence 4
No 27
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.48 E-value=0.54 Score=40.83 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=56.5
Q ss_pred eCceEEEEe---CCCcEEEEcccccceeecCC---CCCCCCCc-eeEEE------EEEcCC--C-CCCccEEEEEecCCC
Q 043223 106 CNGLVCIDF---DSTNMVLWNPSTRVSRELPR---PAPFPEQV-IRGFI------STIGNG--N-VSRETKVQVFSLKNN 169 (202)
Q Consensus 106 ~~Gll~~~~---~~~~~~V~NP~T~~~~~lP~---~~~~~~~~-~~~~g------~Vv~~~--~-~~~~~~~~vy~s~t~ 169 (202)
++|.|.+.. ....+.++||.|++|..+++ .+..+... ...++ ||+... . ......+++|+..++
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 377666653 12279999999999999986 23222221 12222 233211 1 033467999999999
Q ss_pred c------eeEccccCcccccCCcceEEC-CeEEEEe
Q 043223 170 S------WKEIQYFHARIDIYGLGVLSN-GKLHWLG 198 (202)
Q Consensus 170 ~------W~~~~~~~~~~~~~~~~v~~~-G~lywl~ 198 (202)
+ |+.+..+|...+.....+.++ |.+|-+.
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~G 614 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVG 614 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEEC
T ss_pred ccccceEEEEcCCCCCCCcccceEEEeCCCEEEEEC
Confidence 9 888765443323344556677 8888764
No 28
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=69.34 E-value=2.5 Score=22.64 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHhcCC
Q 043223 2 AKLPQDIVADILSRLP 17 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP 17 (202)
..||.|+..|||+--.
T Consensus 22 ~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 22 KQLPADIQEEILSGKS 37 (48)
T ss_dssp TTSCHHHHHHHTTCCC
T ss_pred HHCcHHHHHHHHhcch
Confidence 4688888888887543
No 29
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.52 E-value=20 Score=21.31 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=19.6
Q ss_pred eEEEEeCCCcEEEEcccccceeecCCC
Q 043223 109 LVCIDFDSTNMVLWNPSTRVSRELPRP 135 (202)
Q Consensus 109 ll~~~~~~~~~~V~NP~T~~~~~lP~~ 135 (202)
+......+++.|.+||.|++...--+.
T Consensus 22 W~~v~T~dGR~fyyN~~Tk~S~WekP~ 48 (73)
T 2dk7_A 22 WCVVWTGDERVFFYNPTTRLSMWDRPD 48 (73)
T ss_dssp CEEEEESSSCEEEEETTTTEECSSCCT
T ss_pred cEEEECCCCCEEEecCcccceeccCCh
Confidence 333344788889999999998876443
No 30
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=49.92 E-value=47 Score=24.28 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=20.9
Q ss_pred eeCceEEEEeCCCcEEEEcccccceeec
Q 043223 105 SCNGLVCIDFDSTNMVLWNPSTRVSREL 132 (202)
Q Consensus 105 s~~Gll~~~~~~~~~~V~NP~T~~~~~l 132 (202)
|.+|+|... .++.+.|||..|++...+
T Consensus 34 S~~~~lAvg-~D~tV~iWd~~tg~~~~~ 60 (318)
T 4ggc_A 34 SSGNVLAVA-LDNSVYLWSASSGDILQL 60 (318)
T ss_dssp CTTSEEEEE-ETTEEEEEETTTCCEEEE
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence 567776655 578899999999987664
No 31
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=45.64 E-value=62 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=21.5
Q ss_pred eeCceEEEEeCCCcEEEEcccccceeecC
Q 043223 105 SCNGLVCIDFDSTNMVLWNPSTRVSRELP 133 (202)
Q Consensus 105 s~~Gll~~~~~~~~~~V~NP~T~~~~~lP 133 (202)
|.+++|.+. -++.++|||..|++...+-
T Consensus 114 S~~n~lAvg-ld~tV~lWd~~tg~~~~~~ 141 (420)
T 4gga_A 114 SSGNVLAVA-LDNSVYLWSASSGDILQLL 141 (420)
T ss_dssp CTTSEEEEE-ETTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEE-eCCEEEEEECCCCCEEEEE
Confidence 456776665 5789999999999887653
No 32
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=31.81 E-value=22 Score=17.19 Aligned_cols=22 Identities=27% Similarity=0.609 Sum_probs=16.1
Q ss_pred ceeCceEEEEeCCCcEEEEcccc
Q 043223 104 GSCNGLVCIDFDSTNMVLWNPST 126 (202)
Q Consensus 104 ~s~~Gll~~~~~~~~~~V~NP~T 126 (202)
+.|.||-|.. ..+.+-||-|-|
T Consensus 15 dcceglecwk-rrrsfevcvpkt 36 (37)
T 3s3x_D 15 DCCEGLECWK-RRRSFEVCVPKT 36 (37)
T ss_dssp CBCTTEEEEC-CSSSCCEEEECC
T ss_pred chhhhHHHHH-hccceeeecCCC
Confidence 5789999987 556667776655
No 33
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=28.11 E-value=38 Score=15.85 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.4
Q ss_pred CCcHHHHHHHHhcCC
Q 043223 3 KLPQDIVADILSRLP 17 (202)
Q Consensus 3 ~LP~Dll~eIL~rLP 17 (202)
-||.|++.-+|..-|
T Consensus 6 ilpsdimdfvlkntp 20 (31)
T 2agh_C 6 ILPSDIMDFVLKNTP 20 (31)
T ss_dssp SSCHHHHHHHHHHSC
T ss_pred cChHHHHHHHHhCCh
Confidence 489999998887776
No 34
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=24.87 E-value=39 Score=20.22 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhcCC
Q 043223 1 MAKLPQDIVADILSRLP 17 (202)
Q Consensus 1 ~~~LP~Dll~eIL~rLP 17 (202)
|++||.++...|..+..
T Consensus 50 issLP~~~~~~l~~~~~ 66 (76)
T 1tns_A 50 ANSLPVEAKAALLLRQG 66 (76)
T ss_dssp TTTSCHHHHHHHHHHTS
T ss_pred eccCCHHHHHHHHHHhh
Confidence 57899999999987754
No 35
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=23.03 E-value=59 Score=20.41 Aligned_cols=22 Identities=9% Similarity=0.397 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHhcCChhhhHh
Q 043223 2 AKLPQDIVADILSRLPVKSLLR 23 (202)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r 23 (202)
..+|++.+++|..++++.+++.
T Consensus 3 ~~~~~~~i~~ik~~~~i~~v~~ 24 (103)
T 1d0q_A 3 HRIPEETIEAIRRGVDIVDVIG 24 (103)
T ss_dssp TTSCHHHHHHHHHHCCHHHHHT
T ss_pred CcCCHHHHHHHHHcCCHHHHHH
Confidence 3689999999999999988874
No 36
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A
Probab=20.14 E-value=69 Score=23.15 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=11.6
Q ss_pred CCcEEEEcccccceee
Q 043223 116 STNMVLWNPSTRVSRE 131 (202)
Q Consensus 116 ~~~~~V~NP~T~~~~~ 131 (202)
.+.++++||.||+...
T Consensus 36 NG~ifIfnP~TGqLfl 51 (222)
T 3enb_A 36 NGAIFIFNPRTGQLFL 51 (222)
T ss_dssp CEEEEEECTTTCEEEE
T ss_pred cceEEEEeCCCCcEEE
Confidence 3456789999998653
Done!