Query 043224
Match_columns 516
No_of_seqs 358 out of 1491
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.7 1.4E-19 4.9E-24 138.1 1.6 42 277-318 1-45 (60)
2 1wim_A KIAA0161 protein; ring 99.7 1E-16 3.5E-21 134.2 6.8 87 121-210 4-93 (94)
3 2ct7_A Ring finger protein 31; 99.4 7.3E-15 2.5E-19 120.8 -3.8 76 192-271 4-83 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.2 3.2E-13 1.1E-17 109.4 -4.8 65 192-260 5-75 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.0 3.6E-11 1.2E-15 105.8 1.4 115 121-295 6-126 (133)
6 3hcs_A TNF receptor-associated 98.6 3.1E-08 1.1E-12 91.3 4.1 83 120-230 16-98 (170)
7 2ct2_A Tripartite motif protei 98.3 3.8E-07 1.3E-11 74.1 4.2 61 120-187 13-75 (88)
8 2ecv_A Tripartite motif-contai 98.3 8.9E-07 3E-11 71.2 5.9 56 120-181 17-72 (85)
9 2ecw_A Tripartite motif-contai 98.3 1.5E-06 5E-11 69.9 6.7 56 120-181 17-72 (85)
10 2egp_A Tripartite motif-contai 98.2 1.9E-07 6.3E-12 74.5 0.2 57 120-181 10-66 (79)
11 3hct_A TNF receptor-associated 98.2 2.1E-06 7.1E-11 74.2 6.3 83 120-230 16-98 (118)
12 2ecy_A TNF receptor-associated 98.2 8.4E-07 2.9E-11 68.3 3.0 51 120-181 13-63 (66)
13 2ecm_A Ring finger and CHY zin 98.2 1.3E-06 4.5E-11 64.4 4.0 49 121-179 4-54 (55)
14 2ysl_A Tripartite motif-contai 98.2 4.9E-07 1.7E-11 70.9 1.7 53 120-181 18-70 (73)
15 2d8t_A Dactylidin, ring finger 98.1 1.7E-06 5.7E-11 67.7 4.5 55 119-185 12-66 (71)
16 1rmd_A RAG1; V(D)J recombinati 98.1 1.5E-06 5.2E-11 74.7 4.3 82 121-229 22-103 (116)
17 2ysj_A Tripartite motif-contai 98.1 2.4E-06 8.1E-11 65.1 4.8 45 120-171 18-62 (63)
18 1e4u_A Transcriptional repress 98.1 2.2E-06 7.4E-11 68.7 4.1 53 120-181 9-63 (78)
19 3knv_A TNF receptor-associated 98.1 4E-07 1.4E-11 81.4 -0.3 91 120-229 29-119 (141)
20 2yur_A Retinoblastoma-binding 98.0 4.3E-06 1.5E-10 65.9 5.0 49 120-178 13-62 (74)
21 3ztg_A E3 ubiquitin-protein li 98.0 4.2E-06 1.5E-10 68.7 4.9 49 120-178 11-60 (92)
22 1g25_A CDK-activating kinase a 98.0 8.3E-07 2.8E-11 68.1 0.5 53 122-183 3-58 (65)
23 2xeu_A Ring finger protein 4; 98.0 8.7E-07 3E-11 67.4 0.5 52 121-182 2-58 (64)
24 2djb_A Polycomb group ring fin 98.0 7.1E-06 2.4E-10 64.2 5.8 50 120-181 13-63 (72)
25 2csy_A Zinc finger protein 183 98.0 8E-06 2.7E-10 65.4 6.2 48 120-179 13-60 (81)
26 3ng2_A RNF4, snurf, ring finge 98.0 9.7E-07 3.3E-11 68.7 0.7 53 120-182 8-65 (71)
27 1jm7_A BRCA1, breast cancer ty 98.0 3.5E-06 1.2E-10 71.6 4.3 70 121-201 20-89 (112)
28 3lrq_A E3 ubiquitin-protein li 98.0 3E-06 1E-10 71.0 3.8 52 121-183 21-73 (100)
29 2yu4_A E3 SUMO-protein ligase 98.0 5E-06 1.7E-10 68.9 4.8 56 121-180 6-63 (94)
30 1t1h_A Gspef-atpub14, armadill 98.0 4.8E-06 1.6E-10 66.1 4.5 51 120-181 6-56 (78)
31 2kiz_A E3 ubiquitin-protein li 98.0 8.1E-06 2.8E-10 63.2 5.1 50 120-179 12-62 (69)
32 2ea6_A Ring finger protein 4; 97.9 5.4E-06 1.8E-10 63.9 3.9 50 120-179 13-67 (69)
33 3fl2_A E3 ubiquitin-protein li 97.9 5.8E-06 2E-10 71.9 4.4 49 121-180 51-99 (124)
34 2ecj_A Tripartite motif-contai 97.9 8.6E-06 2.9E-10 60.6 4.8 45 120-171 13-57 (58)
35 3l11_A E3 ubiquitin-protein li 97.9 2.6E-06 8.9E-11 73.1 2.0 50 120-180 13-62 (115)
36 2ckl_A Polycomb group ring fin 97.9 1.6E-05 5.6E-10 67.3 7.0 47 121-179 14-61 (108)
37 4ayc_A E3 ubiquitin-protein li 97.9 4.9E-06 1.7E-10 73.9 3.3 46 122-179 53-98 (138)
38 2y43_A E3 ubiquitin-protein li 97.8 8.5E-06 2.9E-10 67.9 3.2 49 121-181 21-70 (99)
39 2kr4_A Ubiquitin conjugation f 97.8 5.9E-05 2E-09 61.2 7.5 50 120-181 12-61 (85)
40 2ep4_A Ring finger protein 24; 97.8 2.3E-05 7.8E-10 61.5 4.9 50 120-179 13-63 (74)
41 1v87_A Deltex protein 2; ring- 97.8 2.5E-05 8.7E-10 66.6 5.4 53 122-179 25-93 (114)
42 1iym_A EL5; ring-H2 finger, ub 97.8 1E-05 3.4E-10 59.6 2.4 49 121-179 4-54 (55)
43 1chc_A Equine herpes virus-1 r 97.7 1.6E-05 5.4E-10 61.3 3.5 48 121-179 4-51 (68)
44 2ect_A Ring finger protein 126 97.7 1.8E-05 6.1E-10 62.7 3.9 52 120-181 13-65 (78)
45 1z6u_A NP95-like ring finger p 97.7 2E-05 6.7E-10 71.1 4.4 50 121-181 77-126 (150)
46 1x4j_A Ring finger protein 38; 97.7 1.9E-05 6.3E-10 62.3 3.7 51 120-180 21-72 (75)
47 2ecn_A Ring finger protein 141 97.7 7.5E-06 2.5E-10 63.6 1.0 47 120-179 13-59 (70)
48 2c2l_A CHIP, carboxy terminus 97.6 4.7E-05 1.6E-09 74.8 6.2 52 119-181 205-256 (281)
49 2l0b_A E3 ubiquitin-protein li 97.6 3.6E-05 1.2E-09 63.2 4.3 49 121-179 39-88 (91)
50 1bor_A Transcription factor PM 97.6 9.7E-06 3.3E-10 60.4 0.6 44 121-179 5-48 (56)
51 3htk_C E3 SUMO-protein ligase 97.6 2.3E-05 7.9E-10 76.3 2.7 54 120-181 179-233 (267)
52 2ckl_B Ubiquitin ligase protei 97.5 5E-05 1.7E-09 69.3 4.2 48 121-179 53-101 (165)
53 1jm7_B BARD1, BRCA1-associated 97.5 1.7E-05 6E-10 68.2 0.6 46 121-180 21-67 (117)
54 2kre_A Ubiquitin conjugation f 97.5 3.9E-05 1.3E-09 64.3 2.4 49 120-180 27-75 (100)
55 1wgm_A Ubiquitin conjugation f 97.4 0.00027 9.4E-09 58.9 7.1 50 120-181 20-70 (98)
56 4ic3_A E3 ubiquitin-protein li 97.3 8.4E-05 2.9E-09 58.5 2.4 43 121-179 23-66 (74)
57 2ct7_A Ring finger protein 31; 97.3 7.8E-05 2.7E-09 60.7 2.1 37 281-317 24-61 (86)
58 2ecl_A Ring-box protein 2; RNF 97.3 0.00017 5.8E-09 57.8 3.7 50 121-180 14-76 (81)
59 2ecg_A Baculoviral IAP repeat- 97.2 0.0002 6.9E-09 56.4 3.1 44 121-180 24-68 (75)
60 2d8s_A Cellular modulator of i 97.1 0.0005 1.7E-08 55.1 4.9 52 120-179 13-69 (80)
61 2f42_A STIP1 homology and U-bo 97.1 0.00033 1.1E-08 64.8 4.2 51 120-181 104-154 (179)
62 2y1n_A E3 ubiquitin-protein li 97.0 0.00046 1.6E-08 71.2 4.8 48 122-180 332-379 (389)
63 2jmo_A Parkin; IBR, E3 ligase, 97.0 0.00024 8.1E-09 57.0 2.1 38 281-318 24-69 (80)
64 2vje_A E3 ubiquitin-protein li 96.9 0.00045 1.5E-08 52.8 3.0 47 121-179 7-56 (64)
65 4ap4_A E3 ubiquitin ligase RNF 96.9 0.00028 9.6E-09 61.2 1.7 55 119-183 69-128 (133)
66 3dpl_R Ring-box protein 1; ubi 96.9 0.0008 2.7E-08 56.9 4.2 49 121-179 36-100 (106)
67 2vje_B MDM4 protein; proto-onc 96.8 0.00054 1.9E-08 52.1 2.6 47 121-179 6-55 (63)
68 2yho_A E3 ubiquitin-protein li 96.7 0.00044 1.5E-08 55.2 1.7 43 122-180 18-61 (79)
69 2ea5_A Cell growth regulator w 96.7 0.0015 5E-08 50.5 4.2 45 120-180 13-58 (68)
70 4a0k_B E3 ubiquitin-protein li 96.0 0.0012 4.1E-08 56.8 0.0 49 121-179 47-111 (117)
71 3k1l_B Fancl; UBC, ring, RWD, 95.8 0.0058 2E-07 61.6 4.3 114 42-180 247-373 (381)
72 3t6p_A Baculoviral IAP repeat- 95.7 0.0023 7.8E-08 65.3 1.0 43 121-179 294-337 (345)
73 2ct0_A Non-SMC element 1 homol 95.6 0.0075 2.6E-07 47.4 3.4 50 121-179 14-63 (74)
74 1v92_A NSFL1 cofactor P47; 3-h 95.2 0.042 1.4E-06 38.6 5.9 39 55-93 5-43 (46)
75 1wd2_A Ariadne-1 protein homol 94.3 0.02 6.9E-07 43.0 2.4 38 211-252 4-44 (60)
76 2dal_A Protein KIAA0794; FAS a 93.9 0.11 3.9E-06 39.1 5.9 40 54-93 14-53 (62)
77 2bay_A PRE-mRNA splicing facto 93.5 0.047 1.6E-06 41.0 3.1 48 122-181 3-51 (61)
78 2dam_A ETEA protein; KIAA0887, 92.6 0.15 5.1E-06 39.1 4.7 40 54-93 17-57 (67)
79 1vyx_A ORF K3, K3RING; zinc-bi 92.5 0.17 5.8E-06 37.8 4.9 49 121-179 5-58 (60)
80 2di0_A Activating signal coint 92.3 0.33 1.1E-05 37.5 6.3 41 54-94 12-53 (71)
81 1g25_A CDK-activating kinase a 92.1 0.065 2.2E-06 40.2 2.2 34 237-295 23-56 (65)
82 1wj7_A Hypothetical protein (R 91.8 0.27 9.4E-06 40.8 5.7 39 56-94 40-78 (104)
83 2jun_A Midline-1; B-BOX, TRIM, 91.3 0.1 3.5E-06 42.9 2.7 33 121-153 2-35 (101)
84 2cs3_A Protein C14ORF4, MY039 91.1 0.76 2.6E-05 36.1 7.2 67 119-188 12-88 (93)
85 3e21_A HFAF1, FAS-associated f 90.6 0.21 7.2E-06 35.1 3.3 37 56-92 6-43 (45)
86 2ecy_A TNF receptor-associated 90.2 0.18 6.3E-06 37.8 3.0 50 212-295 14-63 (66)
87 3lrq_A E3 ubiquitin-protein li 90.1 0.15 5.1E-06 41.9 2.6 46 215-294 24-70 (100)
88 1e4u_A Transcriptional repress 89.9 0.1 3.5E-06 41.2 1.4 51 214-294 12-62 (78)
89 2dzl_A Protein FAM100B; UBA-li 89.4 0.57 1.9E-05 35.7 5.2 37 57-93 19-55 (66)
90 1t1h_A Gspef-atpub14, armadill 89.4 0.17 5.9E-06 39.2 2.4 47 214-294 9-55 (78)
91 1z96_A DNA-damage, UBA-domain 89.0 0.73 2.5E-05 30.9 5.1 35 56-91 5-39 (40)
92 3vk6_A E3 ubiquitin-protein li 88.6 0.33 1.1E-05 40.0 3.5 33 124-157 3-35 (101)
93 3fl2_A E3 ubiquitin-protein li 88.5 0.25 8.4E-06 42.2 2.9 46 215-294 54-99 (124)
94 2ckl_B Ubiquitin ligase protei 88.5 0.23 7.8E-06 44.6 2.8 46 215-294 56-102 (165)
95 3vk6_A E3 ubiquitin-protein li 88.2 0.21 7.2E-06 41.2 2.1 49 215-296 3-51 (101)
96 1x4j_A Ring finger protein 38; 87.9 0.24 8.2E-06 38.2 2.3 33 239-297 43-75 (75)
97 2ysl_A Tripartite motif-contai 87.7 0.26 9E-06 37.5 2.4 50 212-295 19-70 (73)
98 4ayc_A E3 ubiquitin-protein li 87.5 0.16 5.4E-06 44.4 1.1 44 215-293 55-98 (138)
99 2ckl_A Polycomb group ring fin 85.5 0.4 1.4E-05 39.7 2.5 48 214-296 16-64 (108)
100 2djb_A Polycomb group ring fin 85.5 0.34 1.2E-05 37.0 1.9 48 214-296 16-64 (72)
101 2ct2_A Tripartite motif protei 85.4 0.45 1.5E-05 37.5 2.6 55 213-295 15-69 (88)
102 3hct_A TNF receptor-associated 84.9 0.34 1.2E-05 41.0 1.8 28 213-249 18-45 (118)
103 1z6u_A NP95-like ring finger p 84.3 0.54 1.8E-05 41.7 2.9 47 215-295 80-126 (150)
104 2ecm_A Ring finger and CHY zin 84.3 0.49 1.7E-05 33.7 2.2 29 239-293 26-54 (55)
105 2ecw_A Tripartite motif-contai 84.0 0.67 2.3E-05 36.0 3.1 52 214-294 20-71 (85)
106 3hcs_A TNF receptor-associated 83.9 0.37 1.3E-05 43.4 1.7 32 212-252 17-48 (170)
107 1bor_A Transcription factor PM 83.5 0.64 2.2E-05 33.7 2.6 27 239-294 23-49 (56)
108 2ysj_A Tripartite motif-contai 83.3 0.25 8.7E-06 36.5 0.3 31 282-317 20-50 (63)
109 1rmd_A RAG1; V(D)J recombinati 82.7 0.62 2.1E-05 39.0 2.5 47 215-295 25-71 (116)
110 1jm7_A BRCA1, breast cancer ty 82.5 0.76 2.6E-05 38.0 3.0 47 215-295 23-71 (112)
111 1ify_A HHR23A, UV excision rep 82.4 1.8 6.1E-05 30.8 4.5 37 56-93 9-45 (49)
112 1pft_A TFIIB, PFTFIIBN; N-term 82.4 0.65 2.2E-05 33.1 2.1 29 281-309 4-34 (50)
113 3j20_Y 30S ribosomal protein S 82.2 0.41 1.4E-05 34.4 1.0 29 280-309 17-47 (50)
114 2ect_A Ring finger protein 126 82.2 0.68 2.3E-05 35.7 2.4 49 214-294 16-64 (78)
115 2ea6_A Ring finger protein 4; 82.2 0.62 2.1E-05 34.7 2.1 52 214-294 16-68 (69)
116 3ztg_A E3 ubiquitin-protein li 82.1 0.7 2.4E-05 36.9 2.5 47 214-293 14-61 (92)
117 2k4x_A 30S ribosomal protein S 81.9 0.43 1.5E-05 35.0 1.0 30 280-309 16-46 (55)
118 2ep4_A Ring finger protein 24; 81.6 0.91 3.1E-05 34.6 2.9 49 214-294 16-64 (74)
119 3nw0_A Non-structural maintena 81.4 0.8 2.7E-05 43.9 3.1 50 121-180 179-229 (238)
120 4ic3_A E3 ubiquitin-protein li 81.4 0.46 1.6E-05 36.6 1.1 27 239-295 41-68 (74)
121 1jm7_B BARD1, BRCA1-associated 81.3 0.91 3.1E-05 38.2 3.0 43 215-294 24-67 (117)
122 1vq8_Z 50S ribosomal protein L 80.7 0.54 1.9E-05 37.5 1.3 35 280-317 25-60 (83)
123 3knv_A TNF receptor-associated 79.7 0.4 1.4E-05 42.1 0.3 30 213-251 31-60 (141)
124 1iym_A EL5; ring-H2 finger, ub 79.3 0.51 1.8E-05 33.7 0.7 35 282-318 5-40 (55)
125 1v87_A Deltex protein 2; ring- 77.3 1.1 3.8E-05 37.2 2.4 38 239-297 60-97 (114)
126 2yur_A Retinoblastoma-binding 77.3 0.6 2E-05 35.9 0.6 31 283-318 16-47 (74)
127 2d8t_A Dactylidin, ring finger 76.7 0.58 2E-05 35.5 0.3 32 282-318 15-46 (71)
128 3ng2_A RNF4, snurf, ring finge 76.6 0.45 1.5E-05 35.9 -0.3 38 281-318 9-48 (71)
129 2g3q_A Protein YBL047C; endocy 75.9 5.5 0.00019 27.1 5.2 35 57-92 6-40 (43)
130 2ecj_A Tripartite motif-contai 75.8 0.52 1.8E-05 34.0 -0.2 31 282-317 15-45 (58)
131 2egp_A Tripartite motif-contai 75.1 0.54 1.9E-05 36.2 -0.2 30 283-317 13-42 (79)
132 2jr6_A UPF0434 protein NMA0874 75.1 1.5 5.1E-05 33.6 2.3 29 281-309 7-36 (68)
133 2c2l_A CHIP, carboxy terminus 74.7 2.1 7E-05 41.2 3.8 48 213-294 208-255 (281)
134 2y1n_A E3 ubiquitin-protein li 73.9 2.6 8.8E-05 43.3 4.4 54 208-295 327-380 (389)
135 2xeu_A Ring finger protein 4; 73.9 0.62 2.1E-05 34.1 -0.1 36 283-318 4-41 (64)
136 1vg5_A RSGI RUH-014, rhomboid 73.5 5.5 0.00019 30.8 5.2 36 57-93 31-66 (73)
137 1chc_A Equine herpes virus-1 r 73.2 0.84 2.9E-05 34.1 0.4 33 281-318 4-37 (68)
138 2ecn_A Ring finger protein 141 73.0 0.87 3E-05 34.3 0.5 31 282-318 15-45 (70)
139 2y43_A E3 ubiquitin-protein li 72.0 0.76 2.6E-05 37.3 -0.1 31 283-318 23-54 (99)
140 2kiz_A E3 ubiquitin-protein li 71.6 1.1 3.7E-05 33.6 0.7 35 282-318 14-48 (69)
141 2vje_B MDM4 protein; proto-onc 71.0 1.3 4.5E-05 32.9 1.1 12 283-294 45-56 (63)
142 2d8v_A Zinc finger FYVE domain 70.8 2.3 7.8E-05 32.2 2.3 32 121-155 7-39 (67)
143 2ecv_A Tripartite motif-contai 70.8 0.97 3.3E-05 35.1 0.3 31 282-317 19-49 (85)
144 2csy_A Zinc finger protein 183 70.0 0.94 3.2E-05 35.3 0.1 32 282-318 15-46 (81)
145 1veg_A NEDD8 ultimate buster-1 67.6 10 0.00035 30.1 5.6 35 58-93 32-66 (83)
146 1wfl_A Zinc finger protein 216 67.3 2.2 7.5E-05 33.1 1.6 34 282-319 25-60 (74)
147 2l0b_A E3 ubiquitin-protein li 66.8 0.54 1.8E-05 37.8 -2.1 34 283-318 41-74 (91)
148 2jp7_A MRNA export factor MEX6 66.5 14 0.0005 27.0 5.9 41 53-93 4-44 (57)
149 3bq3_A Defective in cullin ned 66.3 6 0.0002 38.5 4.9 41 53-93 13-53 (270)
150 2yho_A E3 ubiquitin-protein li 65.3 2.2 7.4E-05 33.4 1.3 30 236-295 32-62 (79)
151 1oai_A Nuclear RNA export fact 65.2 16 0.00055 26.9 6.0 39 54-92 6-44 (59)
152 3l11_A E3 ubiquitin-protein li 64.8 2 6.9E-05 35.7 1.1 31 283-318 16-46 (115)
153 1wfh_A Zinc finger (AN1-like) 64.8 2.6 8.8E-05 31.8 1.5 39 281-323 14-56 (64)
154 2dak_A Ubiquitin carboxyl-term 64.7 9.5 0.00032 28.4 4.8 35 58-93 12-46 (63)
155 1wji_A Tudor domain containing 64.7 14 0.00046 27.7 5.6 36 57-93 11-46 (63)
156 2knz_A Ubiquilin-4; cytoplasm, 63.8 16 0.00055 26.1 5.7 37 56-93 12-49 (53)
157 2jrp_A Putative cytoplasmic pr 63.0 3.8 0.00013 32.4 2.3 34 283-318 3-42 (81)
158 2jy5_A Ubiquilin-1; UBA, alter 62.4 15 0.00051 26.2 5.2 35 57-92 14-49 (52)
159 1weo_A Cellulose synthase, cat 61.0 7.9 0.00027 31.0 3.8 53 221-298 21-74 (93)
160 2ecl_A Ring-box protein 2; RNF 60.2 2.2 7.5E-05 33.3 0.4 23 296-318 39-61 (81)
161 1wg2_A Zinc finger (AN1-like) 60.0 3.4 0.00012 31.2 1.4 39 281-323 14-56 (64)
162 1wff_A Riken cDNA 2810002D23 p 59.7 4 0.00014 32.5 1.9 40 281-323 24-67 (85)
163 2jne_A Hypothetical protein YF 59.3 4.7 0.00016 32.9 2.2 34 283-318 33-72 (101)
164 2hf1_A Tetraacyldisaccharide-1 56.8 5.6 0.00019 30.3 2.2 28 282-309 8-36 (68)
165 1wiv_A UBP14, ubiquitin-specif 56.8 20 0.0007 27.5 5.5 34 59-93 33-66 (73)
166 1wfp_A Zinc finger (AN1-like) 55.9 4.6 0.00016 31.3 1.6 40 280-323 23-66 (74)
167 2js4_A UPF0434 protein BB2007; 55.7 5.9 0.0002 30.4 2.2 29 281-309 7-36 (70)
168 3t6p_A Baculoviral IAP repeat- 55.7 4.6 0.00016 40.8 2.1 30 236-295 309-339 (345)
169 4a0k_B E3 ubiquitin-protein li 55.6 2.4 8.4E-05 35.9 0.0 24 295-318 74-97 (117)
170 2pk7_A Uncharacterized protein 55.2 6.6 0.00023 30.0 2.4 28 282-309 8-36 (69)
171 2f42_A STIP1 homology and U-bo 55.1 12 0.00041 34.0 4.6 50 211-294 104-153 (179)
172 1x4w_A Hypothetical protein FL 51.1 2.9 9.8E-05 31.9 -0.3 40 281-323 14-59 (67)
173 3h0g_I DNA-directed RNA polyme 49.8 9.8 0.00033 31.9 2.8 29 281-309 3-36 (113)
174 2dai_A Ubadc1, ubiquitin assoc 49.0 31 0.0011 27.2 5.5 35 58-93 32-66 (83)
175 2jny_A Uncharacterized BCR; st 48.3 9.3 0.00032 29.0 2.2 29 281-309 9-38 (67)
176 1wgl_A TOLL-interacting protei 48.2 26 0.00089 25.8 4.6 38 56-93 10-48 (59)
177 2dkl_A Trinucleotide repeat co 47.0 37 0.0013 26.9 5.7 37 56-93 22-58 (85)
178 3qt1_I DNA-directed RNA polyme 46.7 9.2 0.00032 33.1 2.2 30 280-309 22-56 (133)
179 2dah_A Ubiquilin-3; UBA domain 46.5 33 0.0011 24.7 4.8 36 57-93 11-47 (54)
180 3dpl_R Ring-box protein 1; ubi 44.7 5.5 0.00019 33.0 0.5 23 296-318 64-86 (106)
181 1dv0_A DNA repair protein HHR2 44.1 8.7 0.0003 26.9 1.4 36 57-93 6-41 (47)
182 2kre_A Ubiquitin conjugation f 43.5 12 0.00041 30.4 2.4 28 213-249 29-56 (100)
183 2l2d_A OTU domain-containing p 43.4 56 0.0019 24.3 5.6 39 54-92 16-54 (73)
184 2cpw_A CBL-interacting protein 43.0 37 0.0013 25.2 4.9 35 58-93 22-57 (64)
185 1vej_A Riken cDNA 4931431F19; 43.0 46 0.0016 25.6 5.5 37 56-93 30-67 (74)
186 3u5c_f 40S ribosomal protein S 42.8 11 0.00039 33.2 2.3 31 281-311 117-150 (152)
187 2xzm_9 RPS31E; ribosome, trans 42.6 8.8 0.0003 35.3 1.5 31 280-311 111-143 (189)
188 1weo_A Cellulose synthase, cat 41.9 48 0.0016 26.5 5.4 49 121-178 15-68 (93)
189 1z60_A TFIIH basal transcripti 41.5 8.8 0.0003 28.4 1.1 34 215-255 17-51 (59)
190 2dag_A Ubiquitin carboxyl-term 41.4 48 0.0016 25.4 5.4 35 58-93 12-47 (74)
191 1dl6_A Transcription factor II 40.8 17 0.00057 26.6 2.5 26 282-307 11-38 (58)
192 1twf_I B12.6, DNA-directed RNA 40.7 9.8 0.00033 32.3 1.4 28 282-309 4-36 (122)
193 2yw8_A RUN and FYVE domain-con 40.7 16 0.00054 28.6 2.6 41 274-316 10-52 (82)
194 1wr1_B Ubiquitin-like protein 40.0 71 0.0024 23.3 5.9 37 56-93 18-55 (58)
195 3h0g_I DNA-directed RNA polyme 39.6 19 0.00064 30.1 3.0 30 212-244 3-36 (113)
196 3qt1_I DNA-directed RNA polyme 39.3 16 0.00054 31.6 2.6 31 210-243 21-55 (133)
197 3m7n_A Putative uncharacterize 38.9 14 0.00048 33.5 2.3 23 283-307 141-164 (179)
198 3k9o_A Ubiquitin-conjugating e 38.8 37 0.0013 31.2 5.2 36 56-92 164-199 (201)
199 2akl_A PHNA-like protein PA012 38.7 14 0.00049 31.7 2.1 31 278-309 23-54 (138)
200 3htk_C E3 SUMO-protein ligase 38.4 9.9 0.00034 36.8 1.2 14 236-249 195-209 (267)
201 1qxf_A GR2, 30S ribosomal prot 37.4 23 0.0008 26.7 2.8 30 214-246 8-38 (66)
202 2lbm_A Transcriptional regulat 36.2 81 0.0028 27.4 6.7 49 121-177 62-117 (142)
203 2lli_A Protein AIR2; RNA surve 35.7 25 0.00084 29.6 3.2 52 243-316 5-73 (124)
204 1whc_A RSGI RUH-027, UBA/UBX 3 35.6 59 0.002 24.1 5.0 35 58-93 12-47 (64)
205 2kpi_A Uncharacterized protein 35.3 20 0.00067 26.1 2.2 26 282-309 10-38 (56)
206 2jrp_A Putative cytoplasmic pr 35.2 15 0.00053 28.9 1.7 25 284-316 33-60 (81)
207 3e46_A Ubiquitin-conjugating e 34.5 54 0.0019 31.3 5.8 36 56-92 216-251 (253)
208 3j20_W 30S ribosomal protein S 34.3 27 0.00093 26.1 2.8 30 214-246 16-46 (63)
209 2bwb_A Ubiquitin-like protein 33.7 1E+02 0.0035 21.2 5.6 36 56-92 8-44 (46)
210 2ko5_A Ring finger protein Z; 33.7 25 0.00084 28.5 2.6 48 119-180 25-73 (99)
211 4esj_A Type-2 restriction enzy 33.1 21 0.0007 33.9 2.4 35 274-309 27-66 (257)
212 1twf_L ABC10-alpha, DNA-direct 33.1 15 0.0005 28.2 1.2 25 282-307 28-53 (70)
213 4gew_A 5'-tyrosyl-DNA phosphod 32.6 59 0.002 32.4 6.1 36 58-93 48-83 (362)
214 1vek_A UBP14, ubiquitin-specif 31.8 82 0.0028 24.7 5.5 35 58-93 32-67 (84)
215 2xzm_6 RPS27E; ribosome, trans 31.6 30 0.001 27.1 2.8 31 214-247 33-64 (81)
216 3iz6_X 40S ribosomal protein S 31.1 28 0.00094 27.7 2.5 38 214-254 37-75 (86)
217 2xvc_A ESCRT-III, SSO0910; cel 30.7 71 0.0024 23.4 4.4 36 44-79 8-48 (59)
218 2cp9_A EF-TS, EF-TSMT, elongat 30.2 97 0.0033 23.1 5.3 37 57-93 11-47 (64)
219 1twf_I B12.6, DNA-directed RNA 30.1 24 0.00081 29.9 2.1 30 212-244 3-36 (122)
220 2dhy_A CUE domain-containing p 28.8 1.1E+02 0.0037 23.0 5.4 38 56-93 19-57 (67)
221 1otr_A Protein CUE2; protein-p 28.7 1.1E+02 0.0038 21.5 5.1 38 56-93 5-43 (49)
222 1joc_A EEA1, early endosomal a 27.8 33 0.0011 29.1 2.7 39 276-316 62-102 (125)
223 1wii_A Hypothetical UPF0222 pr 27.6 23 0.00079 28.1 1.5 28 282-309 23-57 (85)
224 1joc_A EEA1, early endosomal a 27.5 26 0.00089 29.7 2.0 34 121-154 68-103 (125)
225 1tr8_A Conserved protein (MTH1 26.8 87 0.003 25.6 4.9 32 57-88 67-98 (102)
226 1zbd_B Rabphilin-3A; G protein 26.8 22 0.00074 30.7 1.3 31 121-151 54-87 (134)
227 2xzf_A Formamidopyrimidine-DNA 26.4 23 0.00078 34.3 1.6 25 282-306 242-269 (271)
228 1z2q_A LM5-1; membrane protein 26.3 32 0.0011 26.9 2.2 36 119-154 18-55 (84)
229 1ee8_A MUTM (FPG) protein; bet 26.1 27 0.00092 33.7 2.0 25 282-306 235-262 (266)
230 1z67_A Hypothetical protein S4 25.9 74 0.0025 27.4 4.5 48 42-92 60-108 (135)
231 2ekk_A UBA domain from E3 ubiq 25.7 1E+02 0.0035 21.0 4.5 33 58-92 12-44 (47)
232 2bl6_A Nucleocapsid protein P1 25.4 30 0.001 22.5 1.6 17 244-260 2-18 (37)
233 3u6p_A Formamidopyrimidine-DNA 25.1 25 0.00085 34.1 1.5 22 282-303 245-268 (273)
234 2lbc_A Ubiquitin carboxyl-term 24.9 99 0.0034 25.9 5.2 35 58-93 81-115 (126)
235 3t7l_A Zinc finger FYVE domain 24.8 33 0.0011 27.3 2.0 36 120-155 18-55 (90)
236 1k82_A Formamidopyrimidine-DNA 24.7 26 0.00088 33.9 1.5 22 282-303 240-263 (268)
237 3u5c_b RP61, YS20, 40S ribosom 24.6 37 0.0013 26.7 2.1 31 214-247 35-66 (82)
238 3a1b_A DNA (cytosine-5)-methyl 24.6 32 0.0011 30.6 2.0 34 121-157 78-114 (159)
239 3nyb_B Protein AIR2; polya RNA 24.5 35 0.0012 26.8 2.1 51 242-318 5-57 (83)
240 1k3x_A Endonuclease VIII; hydr 24.5 26 0.00089 33.7 1.5 24 282-305 234-260 (262)
241 2o35_A Hypothetical protein DU 24.0 33 0.0011 28.0 1.8 17 145-161 42-58 (105)
242 1nui_A DNA primase/helicase; z 23.9 32 0.0011 32.5 2.1 24 282-308 14-42 (255)
243 3fyb_A Protein of unknown func 23.8 33 0.0011 27.9 1.8 17 145-161 41-57 (104)
244 3swy_A Cyclic nucleotide-gated 23.4 1.8E+02 0.0063 20.2 5.3 41 430-471 4-44 (46)
245 2a51_A Nucleocapsid protein; s 22.8 54 0.0018 21.5 2.4 17 244-260 2-18 (39)
246 1dvp_A HRS, hepatocyte growth 22.4 41 0.0014 31.2 2.4 32 283-316 162-194 (220)
247 3u5c_f 40S ribosomal protein S 22.4 56 0.0019 28.7 3.2 33 213-247 118-151 (152)
248 2zet_C Melanophilin; complex, 22.4 78 0.0027 27.8 4.1 33 281-314 67-100 (153)
249 3j21_g 50S ribosomal protein L 22.3 25 0.00086 25.1 0.7 12 280-291 12-23 (51)
250 1odh_A MGCM1; transcription fa 22.0 71 0.0024 28.3 3.7 34 253-307 96-131 (174)
251 1zbd_B Rabphilin-3A; G protein 20.9 36 0.0012 29.3 1.6 34 281-315 54-88 (134)
252 3swf_A CGMP-gated cation chann 20.4 2.9E+02 0.01 21.1 7.5 46 429-475 5-50 (74)
253 2hu9_A MERP, mercuric transpor 20.2 1.3E+02 0.0046 25.6 5.0 44 168-228 3-49 (130)
254 1k81_A EIF-2-beta, probable tr 20.0 47 0.0016 21.8 1.6 25 284-308 2-30 (36)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.75 E-value=1.4e-19 Score=138.14 Aligned_cols=42 Identities=45% Similarity=1.085 Sum_probs=40.5
Q ss_pred HHhcCcccCCCCCccceecCCCCceee-c--cccccccccccccc
Q 043224 277 WISSHTKPCPKCCKPIEKNGGCNMVRC-K--CGITFNWISGLEYS 318 (516)
Q Consensus 277 wi~~ntK~CPkC~~~IEKn~GCnhMtC-~--C~~~FCw~C~~~w~ 318 (516)
||.++||+||+|+++|||++|||||+| . |+++|||+|+++|+
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 788999999999999999999999999 4 99999999999997
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.65 E-value=1e-16 Score=134.16 Aligned_cols=87 Identities=22% Similarity=0.549 Sum_probs=79.3
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccc--cCHHHHHHhhCCCChHHHHH
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVV--CDEAKIRCLVSARDSNIADK 197 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~--i~~~~i~~ll~~~~~e~~~~ 197 (516)
..++|+||+++++...++.+ +|||.||.+||+.|+..+|.+|...+|+||.++|... ++.+.|+.+++ ++++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~---~~~~~k 80 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA---AEIMQR 80 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSC---HHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCC---HHHHHH
Confidence 56899999999887777776 6999999999999999999998766899999999999 99999999998 789999
Q ss_pred HHHHHHHHhhhcC
Q 043224 198 FERFLLESYIDDN 210 (516)
Q Consensus 198 y~~~~~~~~v~~~ 210 (516)
|.++++++||+++
T Consensus 81 y~~~~~~~~v~~~ 93 (94)
T 1wim_A 81 YKKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHHSSCSSC
T ss_pred HHHHHHHhhhccC
Confidence 9999999999765
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.39 E-value=7.3e-15 Score=120.84 Aligned_cols=76 Identities=22% Similarity=0.515 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCceEeecCCCcceeecc-CCccccccccccc---CCCCCchhHHHHhHH
Q 043224 192 SNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVECA-CGFQFCFSCSSVA---HSPCSCLMWELWSKK 267 (516)
Q Consensus 192 ~e~~~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~---H~p~~C~~~~~w~~k 267 (516)
++++++|++++++++|..+++++||| +|++++...+. ...|.|+ |++.||+.|+.+| |.|.+|.++++|.++
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP---~C~~~~~~~~~-~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA---QCSFGFIYERE-QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS---SSCCCEECCCS-CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc---CCCchheecCC-CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 45788999999999999999999999 89999887654 4569998 9999999999999 999999999999987
Q ss_pred hHHH
Q 043224 268 FEVE 271 (516)
Q Consensus 268 ~~~e 271 (516)
...+
T Consensus 80 n~~~ 83 (86)
T 2ct7_A 80 NSGP 83 (86)
T ss_dssp HTCS
T ss_pred Cccc
Confidence 6443
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.18 E-value=3.2e-13 Score=109.37 Aligned_cols=65 Identities=28% Similarity=0.665 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCceEeecCCCcceeec------cCCcccccccccccCCCCCchh
Q 043224 192 SNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEADELCEVEC------ACGFQFCFSCSSVAHSPCSCLM 260 (516)
Q Consensus 192 ~e~~~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C------~Cg~~fC~~C~~~~H~p~~C~~ 260 (516)
+++++||+++++++||+.+. ++||| +|+|++++...++ ...|.| .||+.||+.|+.+||. .+|.+
T Consensus 5 ~~~~~rY~~~~~e~~v~~~~-~~~CP-~p~C~~~v~~~~~-~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 5 EEQYNRYQQYGAEECVLQMG-GVLCP-RPGCGAGLLPEPD-QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCSCCCSSSCCSSCCCS-SCCCC-SSSCCCCCCCCSC-TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred HHHHHHHHHHHHHHHhhhCC-cEECC-CCCCCcccEECCC-CCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 56889999999999999886 99999 5999999987763 456999 5999999999999999 99975
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=3.6e-11 Score=105.75 Aligned_cols=115 Identities=25% Similarity=0.590 Sum_probs=79.3
Q ss_pred CcccccccccccCC-----CCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhhCCCChHHH
Q 043224 121 STFCCNICCDDVSP-----QEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIA 195 (516)
Q Consensus 121 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~ 195 (516)
+..+|+||++.+.. ..++.++|||.||.+|+..|+... ..||. |...+....+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l~-------- 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIY-------- 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEECB--------
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCccccccccc--------
Confidence 56899999998732 223778999999999999998643 38998 99887754332221
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCCCCCCceEeecC-CCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHH
Q 043224 196 DKFERFLLESYIDDNRRVKWCPSVPHCGNAIQVEA-DELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLS 274 (516)
Q Consensus 196 ~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~-~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~ 274 (516)
+ +.....|| -|...+.... .....+..+|||.||..|... |.
T Consensus 68 -----------i--~~~~~~C~---iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~--------- 110 (133)
T 4ap4_A 68 -----------I--GSGTVSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SL--------- 110 (133)
T ss_dssp -----------C--SSSSCBCT---TTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HH---------
T ss_pred -----------c--CCCCCCCC---CCCCccccccccCcceEeCCCCChhhHHHHHH------------HH---------
Confidence 1 23345688 5876655321 122336668999999999532 32
Q ss_pred HHHHhcCcccCCCCCccceec
Q 043224 275 LNWISSHTKPCPKCCKPIEKN 295 (516)
Q Consensus 275 ~~wi~~ntK~CPkC~~~IEKn 295 (516)
.. .+.||.|+.+|.++
T Consensus 111 ----~~-~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 111 ----KN-ANTCPTCRKKINHK 126 (133)
T ss_dssp ----HH-CSBCTTTCCBCCGG
T ss_pred ----Hc-CCCCCCCCCcCChh
Confidence 22 37999999999875
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.56 E-value=3.1e-08 Score=91.25 Aligned_cols=83 Identities=24% Similarity=0.459 Sum_probs=58.6
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhhCCCChHHHHHHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFE 199 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~~y~ 199 (516)
...+.|+||++.+ .+++.++|||.||..|+..++..+ ..+||. |...+.... ++..
T Consensus 16 ~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~~---------- 71 (170)
T 3hcs_A 16 ESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFPD---------- 71 (170)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEEC----------
T ss_pred CCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC-------CCCCCC--CccCcchhh---hhhh----------
Confidence 4678999999987 456778999999999999999764 238997 988877643 2220
Q ss_pred HHHHHHhhhcCCCcccCCCCCCCCceEeecC
Q 043224 200 RFLLESYIDDNRRVKWCPSVPHCGNAIQVEA 230 (516)
Q Consensus 200 ~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 230 (516)
..++..|. .....||+ .+|+..+....
T Consensus 72 -~~~~~~i~--~l~v~C~n-~GC~~~~~~~~ 98 (170)
T 3hcs_A 72 -NFAKREIL--SLMVKCPN-EGCLHKMELRH 98 (170)
T ss_dssp -HHHHHHHH--TSEEECCS-TTCCCEEEGGG
T ss_pred -HHHHHHHh--hcccCCCC-CCCCceecHhH
Confidence 11222222 23468995 79999988664
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.8e-07 Score=74.12 Aligned_cols=61 Identities=20% Similarity=0.605 Sum_probs=47.4
Q ss_pred CCcccccccccccCCCC--eeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhh
Q 043224 120 SSTFCCNICCDDVSPQE--VTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLV 187 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll 187 (516)
....+|+||++.+.... +..++|||.||..|+..|+.... ..++||. |...+....|..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-----NGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-----SCBCCTT--TCCCBCCSSTTTSE
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-----CCcCCCC--CCCcccchhHHHHH
Confidence 45689999999986433 67789999999999999998641 2578998 99887766555443
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=8.9e-07 Score=71.22 Aligned_cols=56 Identities=25% Similarity=0.656 Sum_probs=45.3
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
....+|+||++.+ .++..++|||.||..|+..|+..+...+. .+.||. |...+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~--~~~CP~--Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG--ESSCPV--CRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS--CCCCTT--TCCSSCSS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC--CCcCCC--CCCccCHH
Confidence 4568999999987 34666899999999999999998765543 579998 99877653
No 9
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.26 E-value=1.5e-06 Score=69.92 Aligned_cols=56 Identities=27% Similarity=0.599 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
...++|+||++.+ .+...++|||.||..|+..|+......+ ....||. |...+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP~--Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTD--GKGNCPV--CRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTT--SCBCCTT--TCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCC--CCCCCCC--CCCcCCHH
Confidence 4568999999987 3456789999999999999998865332 3578997 99877654
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.21 E-value=1.9e-07 Score=74.49 Aligned_cols=57 Identities=23% Similarity=0.549 Sum_probs=44.4
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
....+|+||++.+ .++..++|||.||..|+..|+......+. ....||. |...+...
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~-~~~~CP~--Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG-GKSSCPV--CGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC-CCCCCSS--SCCCCCSS
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC-CCCcCCC--CCCcCCHh
Confidence 3578999999987 34666899999999999999876543322 4678998 99887654
No 11
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.18 E-value=2.1e-06 Score=74.19 Aligned_cols=83 Identities=24% Similarity=0.475 Sum_probs=58.9
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhhCCCChHHHHHHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFE 199 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~~y~ 199 (516)
...+.|+||++.+ .+++.++|||.||..|+..|+... ...||. |...+.... +... .
T Consensus 16 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~---~~~~--~------- 72 (118)
T 3hct_A 16 ESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQ---LFPD--N------- 72 (118)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGG---CEEC--H-------
T ss_pred CCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHh---cccC--H-------
Confidence 4568999999987 456778999999999999999764 238998 998877642 2220 1
Q ss_pred HHHHHHhhhcCCCcccCCCCCCCCceEeecC
Q 043224 200 RFLLESYIDDNRRVKWCPSVPHCGNAIQVEA 230 (516)
Q Consensus 200 ~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~~ 230 (516)
.++..+. .....||+ .+|+..+....
T Consensus 73 --~l~~~i~--~l~v~C~n-~gC~~~~~~~~ 98 (118)
T 3hct_A 73 --FAKREIL--SLMVKCPN-EGCLHKMELRH 98 (118)
T ss_dssp --HHHHHHH--TSEEECSS-TTCCCEEEGGG
T ss_pred --HHHHHHc--cceeECCC-CCCCCEEeeHH
Confidence 1222232 23458995 89999988765
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=8.4e-07 Score=68.33 Aligned_cols=51 Identities=24% Similarity=0.585 Sum_probs=40.6
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
.....|+||++.+. +++.+.|||.||..|+..|+.. ....||. |...+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQTECGHRFCESCMAALLSS-------SSPKCTA--CQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEES--SCCCCSSSCCCCHHHHHHHHTT-------SSCCCTT--TCCCCCTT
T ss_pred CcCCCCCCCChHhc--CeeECCCCCHHHHHHHHHHHHh-------CcCCCCC--CCcCCChh
Confidence 45789999999873 4556899999999999999961 2468998 98877654
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.16 E-value=1.3e-06 Score=64.44 Aligned_cols=49 Identities=22% Similarity=0.594 Sum_probs=39.2
Q ss_pred CcccccccccccCC--CCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSP--QEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+|+||++.+.. ..+..++|||.||..|+..|+... .+||. |...++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 45789999999743 346678999999999999999864 57987 887653
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.9e-07 Score=70.91 Aligned_cols=53 Identities=32% Similarity=0.634 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
.....|+||++.+ .++..++|||.||..|+..|+... ....+||. |...+...
T Consensus 18 ~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS-----CGFFKCPL--CKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS-----CSCCCCSS--SCCCCCCC
T ss_pred ccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC-----CCCCCCCC--CCCcCCcc
Confidence 4568999999987 457778999999999999998621 13578998 98877643
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.7e-06 Score=67.67 Aligned_cols=55 Identities=20% Similarity=0.443 Sum_probs=44.0
Q ss_pred CCCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHH
Q 043224 119 CSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRC 185 (516)
Q Consensus 119 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ 185 (516)
.....+|+||++.+ .+.+.++|||.||..|+..|+... ..||. |...+....+..
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWLG--------KRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTCS--------SBCSS--SCCBCCHHHHSC
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHCC--------CcCcC--cCchhCHhhccC
Confidence 34568999999986 456778999999999999988542 58998 999988765543
No 16
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.13 E-value=1.5e-06 Score=74.69 Aligned_cols=82 Identities=21% Similarity=0.549 Sum_probs=56.7
Q ss_pred CcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhhCCCChHHHHHHHH
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFER 200 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~~y~~ 200 (516)
..+.|+||++.+ .+++.++|||.||..|+..|+... ...||. |...+....+...+ ..
T Consensus 22 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~----~~------- 79 (116)
T 1rmd_A 22 KSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV----KS------- 79 (116)
T ss_dssp HHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC----HH-------
T ss_pred CCCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH----HH-------
Confidence 467899999987 456778999999999999999763 247998 99988765432211 11
Q ss_pred HHHHHhhhcCCCcccCCCCCCCCceEeec
Q 043224 201 FLLESYIDDNRRVKWCPSVPHCGNAIQVE 229 (516)
Q Consensus 201 ~~~~~~v~~~~~~~~CP~~p~C~~~i~~~ 229 (516)
+...+.. ...+||+ .+|+..+...
T Consensus 80 --l~~~i~~--l~v~C~~-~gC~~~~~~~ 103 (116)
T 1rmd_A 80 --FLNILNS--LMVKCPA-QDCNEEVSLE 103 (116)
T ss_dssp --HHHHHHH--CEEECCS-TTCCCEEEHH
T ss_pred --HHHHHHH--hcCCCCC-CCCcchhhHh
Confidence 1111211 2347995 7999888754
No 17
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.4e-06 Score=65.05 Aligned_cols=45 Identities=33% Similarity=0.625 Sum_probs=35.9
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccc
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMA 171 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~ 171 (516)
....+|+||++.+. +++.++|||.||..|+..|+... + ...+||.
T Consensus 18 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~---~--~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDILQ--KPVTIDCGHNFCLKCITQIGETS---C--GFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHHHC---S--SCCCCSC
T ss_pred ccCCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHHcC---C--CCCcCcC
Confidence 45689999999874 56778999999999999999852 1 2467886
No 18
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.09 E-value=2.2e-06 Score=68.69 Aligned_cols=53 Identities=21% Similarity=0.542 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCCeeec--CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTM--DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l--~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
....+|+||++.+...++..+ .|||.||..||..++.. ....||. |...+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCC
Confidence 356799999998865444444 59999999999988643 2368998 99877654
No 19
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.08 E-value=4e-07 Score=81.45 Aligned_cols=91 Identities=16% Similarity=0.336 Sum_probs=56.4
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhhCCCChHHHHHHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFE 199 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~~y~ 199 (516)
...+.|+||++.+ .+++.+.|||.||..|+..++.. ....||. |...+.......++.. .+++ .
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~l~~--~~~~---~ 92 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEGIYEEGISILES--SSAF---P 92 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTTCCCTTTTEECG--GGCE---E
T ss_pred CcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcccccccccccch--hhhc---c
Confidence 4578999999987 45677899999999999999853 2358997 8775432221111110 0000 0
Q ss_pred HHHHHHhhhcCCCcccCCCCCCCCceEeec
Q 043224 200 RFLLESYIDDNRRVKWCPSVPHCGNAIQVE 229 (516)
Q Consensus 200 ~~~~~~~v~~~~~~~~CP~~p~C~~~i~~~ 229 (516)
...+++.|. ....+||+ .+|+..+...
T Consensus 93 d~~~~~~i~--~L~v~Cpn-~GC~~~~~l~ 119 (141)
T 3knv_A 93 DNAARREVE--SLPAVCPS-DGCTWKGTLK 119 (141)
T ss_dssp CHHHHHHHH--TSEEECCS-TTCCCEEEHH
T ss_pred cHHHHHHHc--ccccccCC-CCCCCEeEHH
Confidence 112222232 33458996 8999888754
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.04 E-value=4.3e-06 Score=65.95 Aligned_cols=49 Identities=20% Similarity=0.638 Sum_probs=39.4
Q ss_pred CCcccccccccccCCCCeeecC-CCCcccHHHHHHHHHhhhhcCCccccccccccccccc
Q 043224 120 SSTFCCNICCDDVSPQEVTTMD-CGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVC 178 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i 178 (516)
.....|+||++.+ .+++.++ |||.||..|+..|+... ....||. |...+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 62 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS------SSSCCSS--SCCSS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc------CCCcCCC--CCCcC
Confidence 4578999999987 4567787 99999999999999863 1368998 88753
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.02 E-value=4.2e-06 Score=68.66 Aligned_cols=49 Identities=20% Similarity=0.638 Sum_probs=39.8
Q ss_pred CCcccccccccccCCCCeeecC-CCCcccHHHHHHHHHhhhhcCCccccccccccccccc
Q 043224 120 SSTFCCNICCDDVSPQEVTTMD-CGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVC 178 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i 178 (516)
...+.|+||++.+ .+++.++ |||.||..|+..++... ....||. |...+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC------TTCCCTT--TCCSS
T ss_pred CcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc------CCCcCcC--CCCcC
Confidence 4578999999987 4567788 99999999999998742 2368998 88875
No 22
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.02 E-value=8.3e-07 Score=68.13 Aligned_cols=53 Identities=21% Similarity=0.521 Sum_probs=39.3
Q ss_pred ccccccccc-ccCCC--CeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHH
Q 043224 122 TFCCNICCD-DVSPQ--EVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKI 183 (516)
Q Consensus 122 ~~~C~IC~e-~~~~~--~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i 183 (516)
..+|+||++ .+... ....++|||.||..|+..++.. + ..+||. |...+....+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G---AGNCPE--CGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T---SSSCTT--TCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C---CCcCCC--CCCccccccc
Confidence 568999999 44322 2246799999999999999763 1 368997 9988775544
No 23
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.02 E-value=8.7e-07 Score=67.39 Aligned_cols=52 Identities=25% Similarity=0.707 Sum_probs=40.3
Q ss_pred CcccccccccccCC-----CCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHH
Q 043224 121 STFCCNICCDDVSP-----QEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAK 182 (516)
Q Consensus 121 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~ 182 (516)
...+|+||++.+.. ..+..++|||.||..|+..|+.. ...||. |...+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccc
Confidence 35789999998642 22367799999999999999975 247997 998877543
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=7.1e-06 Score=64.23 Aligned_cols=50 Identities=32% Similarity=0.812 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
.....|+||++.+. +.+.+ .|||.||..|+..|+.. ...||. |...+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSS
T ss_pred CCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcc
Confidence 45789999999874 35555 99999999999999965 257997 99877654
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=8e-06 Score=65.42 Aligned_cols=48 Identities=31% Similarity=0.729 Sum_probs=39.8
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+.|+||++.+ .+++.++|||.||..|+..|+.. ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 3567999999987 45677899999999999999964 357998 998775
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.01 E-value=9.7e-07 Score=68.74 Aligned_cols=53 Identities=28% Similarity=0.724 Sum_probs=41.0
Q ss_pred CCcccccccccccCC-----CCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHH
Q 043224 120 SSTFCCNICCDDVSP-----QEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAK 182 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~ 182 (516)
....+|+||++.+.. ..+..++|||.||..|+..|+... ..||. |...+....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhh
Confidence 356889999998632 223678999999999999999753 47998 988776543
No 27
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.01 E-value=3.5e-06 Score=71.60 Aligned_cols=70 Identities=19% Similarity=0.438 Sum_probs=48.6
Q ss_pred CcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHHHHhhCCCChHHHHHHHH
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKIRCLVSARDSNIADKFER 200 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~e~~~~y~~ 200 (516)
....|+||++.+ .++..++|||.||..|+..|+... . ....||. |...+....+..... -....+.+.+
T Consensus 20 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~--Cr~~~~~~~~~~~~~--l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK--K---GPSQCPL--CKNDITKRSLQESTR--FSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSS--S---SSCCCTT--TSCCCCTTTCBCCCS--SSHHHHHHHH
T ss_pred CCCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhC--C---CCCCCcC--CCCcCCHhhcCccHH--HHHHHHHHHH
Confidence 356899999987 455668999999999999999854 1 2478998 998887654433222 1235555544
Q ss_pred H
Q 043224 201 F 201 (516)
Q Consensus 201 ~ 201 (516)
.
T Consensus 89 ~ 89 (112)
T 1jm7_A 89 I 89 (112)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.01 E-value=3e-06 Score=70.99 Aligned_cols=52 Identities=19% Similarity=0.560 Sum_probs=42.5
Q ss_pred CcccccccccccCCCCeee-cCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHH
Q 043224 121 STFCCNICCDDVSPQEVTT-MDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKI 183 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i 183 (516)
..+.|+||++.+ .+++. ++|||.||..|+..|+... ...||. |...+....+
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGC
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHh
Confidence 467899999987 45677 8999999999999999864 258998 9988876543
No 29
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=5e-06 Score=68.90 Aligned_cols=56 Identities=16% Similarity=0.413 Sum_probs=44.1
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccc-cCH
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVV-CDE 180 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~-i~~ 180 (516)
..+.|+||++.+ .+++.+ .|||.||+.|+..|+...-..+ ...+||..+|... +..
T Consensus 6 ~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~--~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRK--KKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTT--CCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcC--CCCCCCcCcCcccccCH
Confidence 568999999986 568888 4999999999999998642111 3578999999865 554
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.99 E-value=4.8e-06 Score=66.13 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
...+.|+||++.+ .+++.++|||.||..|+..|+.. | ..+||. |...+...
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~---~~~CP~--C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G---HKTCPK--SQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T---CCBCTT--TCCBCSSC
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C---cCCCCC--CcCCCChh
Confidence 3578999999987 56777899999999999999963 2 367998 98877643
No 31
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=8.1e-06 Score=63.19 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=39.7
Q ss_pred CCcccccccccccCC-CCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 120 SSTFCCNICCDDVSP-QEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
.....|+||++.+.. ..+..++|||.||..|+..|+... .+||. |...+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCcccc
Confidence 356789999998754 356678999999999999999752 35998 887665
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=5.4e-06 Score=63.89 Aligned_cols=50 Identities=30% Similarity=0.748 Sum_probs=38.9
Q ss_pred CCcccccccccccCC-----CCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 120 SSTFCCNICCDDVSP-----QEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
.....|+||++.+.. ..+..+.|||.||..|+..|+.. ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 457889999998642 12367899999999999999975 247987 887664
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.94 E-value=5.8e-06 Score=71.90 Aligned_cols=49 Identities=29% Similarity=0.575 Sum_probs=40.3
Q ss_pred CcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
..++|+||++.+ .+++.++|||.||..|+..|+.. ....||. |...+..
T Consensus 51 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 457899999987 46778899999999999999972 2358998 9887764
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=8.6e-06 Score=60.58 Aligned_cols=45 Identities=27% Similarity=0.713 Sum_probs=34.8
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccc
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMA 171 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~ 171 (516)
.....|+||++.+. +.+.++|||.||..|+..|+... . ...+||.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~--~---~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--EPVIIECGHNFCKACITRWWEDL--E---RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHTTSS--C---CSCCCSC
T ss_pred ccCCCCccCCcccC--ccEeCCCCCccCHHHHHHHHHhc--C---CCCCCCC
Confidence 35679999999874 45668999999999999997641 1 2467885
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.93 E-value=2.6e-06 Score=73.07 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=40.2
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
...+.|+||++.+ .+++.++|||.||..|+..++.. ....||. |...+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK-------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT-------TTSBCTT--TCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH-------CcCCCCC--CCcccCc
Confidence 3568999999987 45777899999999999988753 1368998 9988764
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.93 E-value=1.6e-05 Score=67.26 Aligned_cols=47 Identities=26% Similarity=0.651 Sum_probs=38.5
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|+||++.+ .+.+.+ +|||.||..|+..|+... ..||. |...+.
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSC
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhC--------CcCcC--CCcccc
Confidence 567899999987 456666 999999999999998752 57998 887665
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.90 E-value=4.9e-06 Score=73.87 Aligned_cols=46 Identities=30% Similarity=0.743 Sum_probs=37.7
Q ss_pred cccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 122 TFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 122 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
..+|+||++.+ .+++.++|||.||..|+..|+.. ...||. |...+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 46799999987 46788899999999999999753 247998 887664
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.82 E-value=8.5e-06 Score=67.88 Aligned_cols=49 Identities=22% Similarity=0.658 Sum_probs=39.5
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
....|+||++.+. +.+.+ +|||.||..|+..|+.. ...||. |...+...
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChh
Confidence 4578999999874 45566 99999999999999973 258997 99877753
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.77 E-value=5.9e-05 Score=61.18 Aligned_cols=50 Identities=8% Similarity=0.020 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
...+.|+||++-+ .+++.++|||.||+.|+..|+.. ...||. |+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChH
Confidence 4679999999986 67888999999999999999974 147998 88877654
No 40
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2.3e-05 Score=61.46 Aligned_cols=50 Identities=26% Similarity=0.608 Sum_probs=39.3
Q ss_pred CCcccccccccccCCC-CeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 120 SSTFCCNICCDDVSPQ-EVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
.....|+||++.+... .+..++|+|.||..|+..|+... ..||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 3567899999998643 34556999999999999999753 37998 887654
No 41
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.76 E-value=2.5e-05 Score=66.59 Aligned_cols=53 Identities=19% Similarity=0.450 Sum_probs=38.8
Q ss_pred cccccccccccCCC----------------CeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 122 TFCCNICCDDVSPQ----------------EVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 122 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
..+|+||++.+... ....++|+|.||..|+..|+...-.. ....||. |...+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~---~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD---GSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS---SCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC---CCCcCCC--CCCccC
Confidence 46899999997432 12256999999999999999543211 3468998 988765
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.76 E-value=1e-05 Score=59.64 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=37.3
Q ss_pred CcccccccccccCCC-CeeecC-CCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQ-EVTTMD-CGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+|+||++.+..+ .+..++ |||.||..|+..|+.. ...||. |...+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 456899999998653 345565 9999999999999853 247988 877553
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.75 E-value=1.6e-05 Score=61.27 Aligned_cols=48 Identities=29% Similarity=0.592 Sum_probs=38.0
Q ss_pred CcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|+||++.+. +....++|||.||..|+..|+... ..||. |...+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 3568999999864 334678999999999999998642 47998 887765
No 44
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.75 E-value=1.8e-05 Score=62.74 Aligned_cols=52 Identities=21% Similarity=0.492 Sum_probs=40.7
Q ss_pred CCcccccccccccCCC-CeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQ-EVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
....+|+||++.+... .+..++|+|.||..|+..|+... ..||. |...+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--------DSCPV--CRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--------CSCTT--TCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--------CcCcC--cCCccCCc
Confidence 4567999999998643 44567999999999999998532 47998 98877653
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.73 E-value=2e-05 Score=71.12 Aligned_cols=50 Identities=26% Similarity=0.601 Sum_probs=41.1
Q ss_pred CcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
..+.|+||++.+ .+++.++|||.||..|+..++.. ....||. |...+...
T Consensus 77 ~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 457899999987 46777999999999999999974 2368998 99877754
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=1.9e-05 Score=62.27 Aligned_cols=51 Identities=20% Similarity=0.502 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCC-eeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 120 SSTFCCNICCDDVSPQE-VTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
....+|+||++.+.... +..++|+|.||..|+..|+... ..||. |...+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 35678999999986543 4567999999999999998652 37998 8876653
No 47
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=7.5e-06 Score=63.58 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=37.5
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
.....|+||++.+.. ..++|||.||..|+..|+.. ...||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSDR--------HRNCPI--CRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSCC--------CSSCHH--HHHCTT
T ss_pred CCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHHC--------cCcCCC--cCCccc
Confidence 356789999999753 77899999999999998761 357987 876654
No 48
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.65 E-value=4.7e-05 Score=74.78 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=42.2
Q ss_pred CCCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 119 CSSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 119 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
....+.|+||++.+ .+++.++|||.||+.|+..|+... + ..||. |+..++..
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~----~~cP~--~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----HFNPV--TRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C----SSCTT--TCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C----CCCcC--CCCCCchh
Confidence 34678999999986 678889999999999999999752 2 23998 99888754
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.64 E-value=3.6e-05 Score=63.19 Aligned_cols=49 Identities=24% Similarity=0.687 Sum_probs=38.9
Q ss_pred CcccccccccccCCCC-eeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQE-VTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|+||++.+.... +..++|||.||..|+..|+... -.||. |...++
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~--------~~CP~--Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS--------GTCPV--CRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT--------CBCTT--TCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC--------CcCcC--cCccCC
Confidence 4678999999986543 5567999999999999998532 37998 887665
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.62 E-value=9.7e-06 Score=60.39 Aligned_cols=44 Identities=18% Similarity=0.560 Sum_probs=35.1
Q ss_pred CcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+|+||++.+. ++..++|||.||..|+.. ..+.||. |...+.
T Consensus 5 ~~~~C~IC~~~~~--~p~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAK--CPKLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCB--CCSCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSS
T ss_pred cCCCceEeCCccC--CeEEcCCCCcccHHHHcc-----------CCCCCCc--CCcEee
Confidence 4678999999874 567789999999999766 2468998 887654
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.58 E-value=2.3e-05 Score=76.31 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=43.5
Q ss_pred CCcccccccccccCCCCeee-cCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTT-MDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
...+.|+||++.+ .++++ ..|||.||+.|+..|+... | ...||..||...+...
T Consensus 179 ~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~---~---~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY---T---TRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC---S---CEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC---C---CCCCCcccccCcCchh
Confidence 3567999999987 55665 5999999999999998742 2 3689999999977654
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.54 E-value=5e-05 Score=69.26 Aligned_cols=48 Identities=29% Similarity=0.654 Sum_probs=38.5
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|+||++.+. +++.+ +|||.||..|+..|+.. + ...||. |...+.
T Consensus 53 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLK--NTMTTKECLHRFCADCIITALRS----G---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHT----T---CCBCTT--TCCBCC
T ss_pred CCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHh----C---cCCCCC--CCCcCC
Confidence 4568999999874 45555 99999999999999973 1 367998 998774
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.50 E-value=1.7e-05 Score=68.17 Aligned_cols=46 Identities=24% Similarity=0.587 Sum_probs=37.7
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
..++|+||++.+ .+++.+ +|||.||..|+..++. ..||. |...+..
T Consensus 21 ~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSC
T ss_pred hCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCcc
Confidence 467899999987 456777 9999999999998875 57998 9887653
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.48 E-value=3.9e-05 Score=64.31 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
...+.|+||++-+ .+++.++|||.||+.|+..|+.. ...||. |+..+..
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCCh
Confidence 4678999999986 67888899999999999999863 247998 8887765
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.44 E-value=0.00027 Score=58.85 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCCeeecCCC-CcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCG-HCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
...+.|+||++-+ .+++.++|| |.||+.|+..|+.. ...||. |+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChh
Confidence 4678999999986 678889999 99999999999974 137998 88877753
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.31 E-value=8.4e-05 Score=58.53 Aligned_cols=43 Identities=30% Similarity=0.649 Sum_probs=34.9
Q ss_pred CcccccccccccCCCCeeecCCCCc-ccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHC-FCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|+||++.+ .++..++|||. ||..|+..+ .+||. |...+.
T Consensus 23 ~~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred cCCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 356899999985 56778899999 999998765 57988 887665
No 57
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.31 E-value=7.8e-05 Score=60.69 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=33.5
Q ss_pred CcccCCCCCccceecCCCCceee-cccccccccccccc
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLEY 317 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~w 317 (516)
+.+-||+|...+....+-..++| .|++.||+.|..+|
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 45679999999988888888999 69999999999999
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00017 Score=57.78 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=36.0
Q ss_pred CcccccccccccCC-----------C-Ceeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 121 STFCCNICCDDVSP-----------Q-EVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 121 ~~~~C~IC~e~~~~-----------~-~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
...+|+||++++.. + .+..+ .|||.||.+|+..|+... -.||. |...+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcch
Confidence 34568888887632 2 23444 699999999999998753 37998 9877653
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.0002 Score=56.41 Aligned_cols=44 Identities=30% Similarity=0.605 Sum_probs=34.4
Q ss_pred CcccccccccccCCCCeeecCCCCc-ccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHC-FCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
...+|+||++.+ .++..++|||. ||..|+.. ..+||. |...+..
T Consensus 24 ~~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 356899999985 55777899999 99999842 257998 8876653
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.10 E-value=0.0005 Score=55.07 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=40.9
Q ss_pred CCcccccccccccCCCCeeecCCC-----CcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCG-----HCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
.....|.||++++..++...++|+ |.|+.+|+..|+... ....||. |...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cpl--Cr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS------DTRCCEL--CKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSS--SCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC------CCCCCCC--CCCeee
Confidence 345689999998865555567886 999999999999864 2368998 987664
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.09 E-value=0.00033 Score=64.82 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
...+.|+||++.+ .+++.++|||.||+.|+..|+... |. .||. |+..++..
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~~----tcP~--t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---GH----FDPV--TRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---CS----BCTT--TCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---CC----CCCC--CcCCCChh
Confidence 4679999999986 578888999999999999999752 22 6998 88877754
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.01 E-value=0.00046 Score=71.17 Aligned_cols=48 Identities=25% Similarity=0.581 Sum_probs=39.0
Q ss_pred cccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 122 TFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 122 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
...|+||++.. .++..++|||.||..|+..|+.. ....||. |...+..
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCC
Confidence 36899999986 56778899999999999999874 1357998 9887654
No 63
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.00 E-value=0.00024 Score=56.98 Aligned_cols=38 Identities=24% Similarity=0.493 Sum_probs=35.0
Q ss_pred CcccCCC--CCccceecCCCCceee------ccccccccccccccc
Q 043224 281 HTKPCPK--CCKPIEKNGGCNMVRC------KCGITFNWISGLEYS 318 (516)
Q Consensus 281 ntK~CPk--C~~~IEKn~GCnhMtC------~C~~~FCw~C~~~w~ 318 (516)
+.+-||. |+..|....+...++| .|++.||+.|+..|.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 3688998 9999998889999999 799999999999996
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.92 E-value=0.00045 Score=52.76 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=35.8
Q ss_pred CcccccccccccCCCCeeec--CCCCc-ccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTM--DCGHC-FCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+|.||++.. .++..+ +|||. ||..|...+... .-+||. |...+.
T Consensus 7 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 466899999985 344544 99999 899999988752 236998 887664
No 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.89 E-value=0.00028 Score=61.18 Aligned_cols=55 Identities=27% Similarity=0.681 Sum_probs=42.2
Q ss_pred CCCcccccccccccCC-----CCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHHHH
Q 043224 119 CSSTFCCNICCDDVSP-----QEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEAKI 183 (516)
Q Consensus 119 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~~i 183 (516)
......|+||++.+.. .....++|||.||..|+..|+... ..||. |...+....+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhcc
Confidence 3457789999998642 123667999999999999999752 47998 9988876543
No 66
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.85 E-value=0.0008 Score=56.87 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=37.4
Q ss_pred CcccccccccccCCC----------------CeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQ----------------EVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+|.||++.+... .+..++|+|.|+..|+..|+.. ...||. |...+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcce
Confidence 456899999987533 1345799999999999999875 247997 887653
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.82 E-value=0.00054 Score=52.11 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=34.9
Q ss_pred CcccccccccccCCCCeeec--CCCCc-ccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTM--DCGHC-FCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|.||++... +...+ +|||. ||..|...+... .-+||. |...+.
T Consensus 6 ~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred cCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 4568999999753 33344 99998 999999887643 147998 888764
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.74 E-value=0.00044 Score=55.19 Aligned_cols=43 Identities=26% Similarity=0.775 Sum_probs=34.5
Q ss_pred cccccccccccCCCCeeecCCCCc-ccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 122 TFCCNICCDDVSPQEVTTMDCGHC-FCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 122 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
...|.||++.. .++..++|||. ||..|...+ ..||. |...+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 45799999975 56778899999 999998743 28988 9887664
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.67 E-value=0.0015 Score=50.54 Aligned_cols=45 Identities=20% Similarity=0.561 Sum_probs=35.4
Q ss_pred CCcccccccccccCCCCeeecCCCCc-ccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 120 SSTFCCNICCDDVSPQEVTTMDCGHC-FCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
.....|.||++.. .++..++|||. ||..|... ..+||. |...|..
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc------------CCCCCC--CCcchhc
Confidence 3567899999975 56778899999 99999983 147988 8876653
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.96 E-value=0.0012 Score=56.76 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=0.8
Q ss_pred CcccccccccccCCC----------------CeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQ----------------EVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+|.||++++... .+..++|+|.|+..|+..|+... -.||. |...+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCC--CCCeee
Confidence 346899999997531 12235899999999999998762 36987 887654
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.83 E-value=0.0058 Score=61.59 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=67.4
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhhhChhHHHHHhCc-ccccCCCCC---CCC
Q 043224 42 SSMVIPKESLLAAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEEGKDKLFAQAGV-TVVENDHQV---PLS 117 (516)
Q Consensus 42 ~~~vlt~~~i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e~~~~~~~~~~gl-~~~~~~~~~---~~~ 117 (516)
....|.++.....+++.+.+= -.+||.++-+- +.+..-.|+ ..+...... ...
T Consensus 247 e~~FlGpd~~V~~Lr~~l~~N----------------l~~Wd~d~si~-------eNL~~IL~i~~fP~p~~~~~~~~~e 303 (381)
T 3k1l_B 247 SLKIIGPTEEVARLRHVLSDG----------------LSNWDSEMNIH-------KNLLRMFDLCYFPMPDWSDGPKLDE 303 (381)
T ss_dssp EEEEESSHHHHHHHHHHHHHH----------------HHTCCTTSCHH-------HHHHHHTTCSSCCCCCGGGCCSCTT
T ss_pred eeEEECChhHhHHHHHHHhhh----------------hhhcCccCCHH-------HHHHHHhCccccCCCcccccccccc
Confidence 467788877766666554432 14788765331 223333455 222211100 001
Q ss_pred CCCCcccccccccccCC-CCee-----ecCCCCcccHHHHHHHHHhhhhcCCccc---ccccccccccccCH
Q 043224 118 QCSSTFCCNICCDDVSP-QEVT-----TMDCGHCFCNNCWTEHFIVKINDGQSRR---IKCMALKCNVVCDE 180 (516)
Q Consensus 118 ~~~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~~yl~~~I~~g~~~~---i~CP~~~C~~~i~~ 180 (516)
......+|+||++.+.. +.+. ...|+|.|...|+..|+.+.-...+++. =.||. |...|+-
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 22356789999998764 2222 3479999999999999988654433322 36997 9987763
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.74 E-value=0.0023 Score=65.29 Aligned_cols=43 Identities=28% Similarity=0.695 Sum_probs=35.2
Q ss_pred CcccccccccccCCCCeeecCCCCc-ccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHC-FCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|+||++.+ .+++.++|||. ||..|+..+ ..||. |...+.
T Consensus 294 ~~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred CCCCCCccCCcC--CceEEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 357899999986 56788899999 999998754 47998 888765
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.64 E-value=0.0075 Score=47.41 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=37.6
Q ss_pred CcccccccccccCCCCeeecCCCCcccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
...+|.||++.+.....- ..|+|.|...|+..||... ..-+||. |...+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C-~~C~h~fH~~Ci~kWl~~~------~~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC-ETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC-SSSCCEECHHHHHHHSTTC------SSCCCTT--TCSCCC
T ss_pred CCCcCcchhhHcccCCcc-CCCCchhhHHHHHHHHHhc------CCCCCCC--CcCcCC
Confidence 356899999998643322 2899999999999999753 1247998 887654
No 74
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=95.22 E-value=0.042 Score=38.64 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 55 QMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 55 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
+++.|....+++|.++..|+.+|...+||.+..+..||+
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456788999999999999999999999999999999995
No 75
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.32 E-value=0.02 Score=43.01 Aligned_cols=38 Identities=26% Similarity=0.677 Sum_probs=30.8
Q ss_pred CCcccCCCCCCCCceEeecCCCcceeecc---CCccccccccccc
Q 043224 211 RRVKWCPSVPHCGNAIQVEADELCEVECA---CGFQFCFSCSSVA 252 (516)
Q Consensus 211 ~~~~~CP~~p~C~~~i~~~~~~~~~v~C~---Cg~~fC~~C~~~~ 252 (516)
.+.+.|| .|+..|...++ -..++|. |++.||+.|+.+|
T Consensus 4 ~~~k~CP---~C~~~Iek~~G-CnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 4 ANTKECP---KCHVTIEKDGG-CNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCCT---TTCCCCSSCCS-CCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ccceECc---CCCCeeEeCCC-CCcEEECCCCcCCEEeeCcCCCc
Confidence 3467898 79999997664 3468996 9999999999876
No 76
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.90 E-value=0.11 Score=39.08 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 54 AQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 54 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.|++.|...+.+++.++..|+.+|..++||.+..+..||+
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567789999999999999999999999999999999995
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=93.48 E-value=0.047 Score=41.01 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=36.5
Q ss_pred cccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCHH
Q 043224 122 TFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDEA 181 (516)
Q Consensus 122 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~~ 181 (516)
.+.|+|+++.+ .+++.+ .+||.|++.|+..|+... | +||. .+..+...
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChh
Confidence 47899999986 466777 999999999999999752 2 3887 55555543
No 78
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.56 E-value=0.15 Score=39.10 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 54 AQMGDLLRVMDLLS-LKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 54 ~~~~~i~~v~~~l~-i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+++.|...+.|+| .++..|+.+|..++||.+..+..||+
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34667999999999 88999999999999999999999995
No 79
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.54 E-value=0.17 Score=37.80 Aligned_cols=49 Identities=22% Similarity=0.554 Sum_probs=34.9
Q ss_pred CcccccccccccCCCCeeecC--CCC---cccHHHHHHHHHhhhhcCCcccccccccccccccC
Q 043224 121 STFCCNICCDDVSPQEVTTMD--CGH---CFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCD 179 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~--CgH---~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~ 179 (516)
....|.||+++.. +.. .++ |.| .|...|+..|+..+ ....||. |+..+.
T Consensus 5 ~~~~CrIC~~~~~-~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~------~~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG-NER-FRACGCTGELENVHRSCLSTWLTIS------RNTACQI--CGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS-CCC-CCSCCCSSGGGSCCHHHHHHHHHHH------TCSBCTT--TCCBCC
T ss_pred CCCEeEEeecCCC-Cce-ecCcCCCCchhhhHHHHHHHHHHhC------CCCccCC--CCCeee
Confidence 4568999999843 333 355 445 89999999999764 1368988 877543
No 80
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=92.32 E-value=0.33 Score=37.51 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHhCCChHHHHHHHhhh
Q 043224 54 AQMGDLLRVMDLL-SLKEKHARTLLIHYRWDVEKVFAVLVEE 94 (516)
Q Consensus 54 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~e~~~e~ 94 (516)
.+.+.|..|.++| .+..+.+..+|.+|+-|.|.+++.++|+
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4568899999999 8999999999999999999999999963
No 81
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.10 E-value=0.065 Score=40.22 Aligned_cols=34 Identities=29% Similarity=0.738 Sum_probs=24.6
Q ss_pred eccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceec
Q 043224 237 ECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKN 295 (516)
Q Consensus 237 ~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn 295 (516)
.=+|||.||..|.. .|+..+...||.|+.++.++
T Consensus 23 ~~~CgH~fC~~Ci~-------------------------~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 23 VNVCGHTLCESCVD-------------------------LLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp ECTTCCCEEHHHHH-------------------------HHHHTTSSSCTTTCCCCSSC
T ss_pred cCCCCCHhHHHHHH-------------------------HHHHcCCCcCCCCCCccccc
Confidence 34699999999951 23233457899999998764
No 82
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.80 E-value=0.27 Score=40.79 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhhh
Q 043224 56 MGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVEE 94 (516)
Q Consensus 56 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e~ 94 (516)
.++|..|+++.|++.+.|+..|...+||.+..++.+++.
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 678999999999999999999999999999999999953
No 83
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.32 E-value=0.1 Score=42.88 Aligned_cols=33 Identities=24% Similarity=0.731 Sum_probs=24.6
Q ss_pred CcccccccccccCCCCe-eecCCCCcccHHHHHH
Q 043224 121 STFCCNICCDDVSPQEV-TTMDCGHCFCNNCWTE 153 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~-~~l~CgH~fC~~C~~~ 153 (516)
+...|+||.+.+....+ +-+.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 35789999976432222 2389999999999997
No 84
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.10 E-value=0.76 Score=36.09 Aligned_cols=67 Identities=24% Similarity=0.527 Sum_probs=46.0
Q ss_pred CCCcccccccccccCCCCeeecC--CCCcccHHHHHHHHHhhhhcCCcccccccc-ccccc-------ccCHHHHHHhhC
Q 043224 119 CSSTFCCNICCDDVSPQEVTTMD--CGHCFCNNCWTEHFIVKINDGQSRRIKCMA-LKCNV-------VCDEAKIRCLVS 188 (516)
Q Consensus 119 ~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~-~~C~~-------~i~~~~i~~ll~ 188 (516)
......|.+|-+.+....++..+ =.|.||..|-+.+|+.+-..+ .+.||. .+|.. .+-..+|..+|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~---EvyCPSG~kCpL~gS~~PWAFmqgEIatILg 88 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG---EVYCPSGEKCPLVGSNVPWAFMQGEIATILS 88 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS---CCCCTTSSCCBCSSSSSBCCCCHHHHHHHHS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC---cEECCCCCccccCCCcCchHHHhhHHHHHhc
Confidence 34678899999998665555432 369999999999999975543 466775 34543 233456777765
No 85
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=90.59 E-value=0.21 Score=35.14 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHhCCChHHHHHHHh
Q 043224 56 MGDLLRVMDLLSLKE-KHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 56 ~~~i~~v~~~l~i~~-~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.+.|....+++|++. +.|+..|-.++||.+..+..|+
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 456778899999995 9999999999999998887765
No 86
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.17 E-value=0.18 Score=37.78 Aligned_cols=50 Identities=28% Similarity=0.619 Sum_probs=33.0
Q ss_pred CcccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCcc
Q 043224 212 RVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKP 291 (516)
Q Consensus 212 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~ 291 (516)
....|| -|...+... +.-+|||.||..|.. .|+......||.|+.+
T Consensus 14 ~~~~C~---IC~~~~~~p------~~~~CgH~fC~~Ci~-------------------------~~~~~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCE---KCHLVLCSP------KQTECGHRFCESCMA-------------------------ALLSSSSPKCTACQES 59 (66)
T ss_dssp CCEECT---TTCCEESSC------CCCSSSCCCCHHHHH-------------------------HHHTTSSCCCTTTCCC
T ss_pred cCCCCC---CCChHhcCe------eECCCCCHHHHHHHH-------------------------HHHHhCcCCCCCCCcC
Confidence 334687 587665421 223799999999842 2343445789999999
Q ss_pred ceec
Q 043224 292 IEKN 295 (516)
Q Consensus 292 IEKn 295 (516)
|..+
T Consensus 60 ~~~~ 63 (66)
T 2ecy_A 60 IVKD 63 (66)
T ss_dssp CCTT
T ss_pred CChh
Confidence 8754
No 87
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=90.05 E-value=0.15 Score=41.95 Aligned_cols=46 Identities=28% Similarity=0.808 Sum_probs=31.3
Q ss_pred cCCCCCCCCceEeecCCCcceeec-cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 215 WCPSVPHCGNAIQVEADELCEVEC-ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
-|| -|...+.. .+.| +|||.||..|.. . |+......||.|+.++.
T Consensus 24 ~C~---IC~~~~~~------p~~~~~CgH~FC~~Ci~------------~-------------~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 24 RCF---ICMEKLRD------ARLCPHCSKLCCFSCIR------------R-------------WLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp BCT---TTCSBCSS------EEECTTTCCEEEHHHHH------------H-------------HHHHTCSBCTTTCCBCC
T ss_pred CCc---cCCccccC------ccccCCCCChhhHHHHH------------H-------------HHHHCcCCCCCCCCcCC
Confidence 587 58766542 3676 499999999952 2 33333368999999885
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
.
T Consensus 70 ~ 70 (100)
T 3lrq_A 70 L 70 (100)
T ss_dssp G
T ss_pred H
Confidence 4
No 88
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=89.92 E-value=0.1 Score=41.20 Aligned_cols=51 Identities=27% Similarity=0.742 Sum_probs=32.4
Q ss_pred ccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
.-|| -|-..+...+ .....|+|||.||..|...+ | ......||.|+.++.
T Consensus 12 ~~Cp---ICle~~~~~d--~~~~p~~CGH~fC~~Cl~~~-----------~--------------~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECP---LCMEPLEIDD--INFFPCTCGYQICRFCWHRI-----------R--------------TDENGLCPACRKPYP 61 (78)
T ss_dssp CBCT---TTCCBCCTTT--TTCCSSTTSCCCCHHHHHHH-----------T--------------TSSCSBCTTTCCBCS
T ss_pred CcCC---ccCccCcccc--ccccccCCCCCcCHHHHHHH-----------H--------------hcCCCCCCCCCCccC
Confidence 4587 5766443222 22345789999999995221 1 113478999999887
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
+
T Consensus 62 ~ 62 (78)
T 1e4u_A 62 E 62 (78)
T ss_dssp S
T ss_pred C
Confidence 5
No 89
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.42 E-value=0.57 Score=35.70 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 57 GDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
+.|...+.+.|.++..|+..|...+||.+..+..||+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4588889999999999999999999999999999994
No 90
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=89.38 E-value=0.17 Score=39.22 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=31.8
Q ss_pred ccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
..|| -|...+.. .|.-+|||.||..|- ..|+..+...||.|+.++.
T Consensus 9 ~~C~---IC~~~~~~------Pv~~~CgH~fc~~Ci-------------------------~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCP---ISLELMKD------PVIVSTGQTYERSSI-------------------------QKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCT---TTSCCCSS------EEEETTTEEEEHHHH-------------------------HHHHTTTCCBCTTTCCBCS
T ss_pred CCCC---CccccccC------CEEcCCCCeecHHHH-------------------------HHHHHHCcCCCCCCcCCCC
Confidence 3587 57665431 255589999999984 1244444678999998876
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
.
T Consensus 55 ~ 55 (78)
T 1t1h_A 55 H 55 (78)
T ss_dssp S
T ss_pred h
Confidence 4
No 91
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=89.03 E-value=0.73 Score=30.94 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHH
Q 043224 56 MGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVL 91 (516)
Q Consensus 56 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~ 91 (516)
.+.|.+++++ |.+...|+..|+..+||.+..++.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888887 9999999999999999999887654
No 92
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=88.61 E-value=0.33 Score=40.03 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=23.0
Q ss_pred cccccccccCCCCeeecCCCCcccHHHHHHHHHh
Q 043224 124 CCNICCDDVSPQEVTTMDCGHCFCNNCWTEHFIV 157 (516)
Q Consensus 124 ~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~yl~~ 157 (516)
-|++|--++. .-...++|.|.||.+|...+...
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~ 35 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKK 35 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHT
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhc
Confidence 4777765532 12234599999999999988754
No 93
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=88.50 E-value=0.25 Score=42.17 Aligned_cols=46 Identities=17% Similarity=0.527 Sum_probs=32.0
Q ss_pred cCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCcccee
Q 043224 215 WCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEK 294 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEK 294 (516)
.|| -|...+.. .|.-+|||.||..|.. .|+..+...||.|+.++..
T Consensus 54 ~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~-------------------------~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCI---CCQELVFR------PITTVCQHNVCKDCLD-------------------------RSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCT---TTSSBCSS------EEECTTSCEEEHHHHH-------------------------HHHHTTCCBCTTTCCBCCT
T ss_pred CCC---cCChHHcC------cEEeeCCCcccHHHHH-------------------------HHHhHCcCCCCCCCccCCC
Confidence 588 58666541 2444899999999952 2334455699999998865
No 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=88.49 E-value=0.23 Score=44.63 Aligned_cols=46 Identities=28% Similarity=0.697 Sum_probs=31.8
Q ss_pred cCCCCCCCCceEeecCCCcceeec-cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 215 WCPSVPHCGNAIQVEADELCEVEC-ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
.|| -|...+.. .+.. +|||.||..|.. .|+......||.|+.+|.
T Consensus 56 ~C~---IC~~~~~~------p~~~~~CgH~fC~~Ci~-------------------------~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCP---ICLDMLKN------TMTTKECLHRFCADCII-------------------------TALRSGNKECPTCRKKLV 101 (165)
T ss_dssp BCT---TTSSBCSS------EEEETTTCCEEEHHHHH-------------------------HHHHTTCCBCTTTCCBCC
T ss_pred CCc---ccChHhhC------cCEeCCCCChhHHHHHH-------------------------HHHHhCcCCCCCCCCcCC
Confidence 588 57665432 2565 799999999941 244444578999999885
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
.
T Consensus 102 ~ 102 (165)
T 2ckl_B 102 S 102 (165)
T ss_dssp S
T ss_pred C
Confidence 3
No 95
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=88.25 E-value=0.21 Score=41.17 Aligned_cols=49 Identities=29% Similarity=0.824 Sum_probs=35.0
Q ss_pred cCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCcccee
Q 043224 215 WCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEK 294 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEK 294 (516)
+|| .|+..|..-+. .+ +|+|.||..|- ..|.+...+.||.|+.+|.+
T Consensus 3 fC~---~C~~Pi~iygR---mI--PCkHvFCydCa-------------------------~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCD---KCGLPIKVYGR---MI--PCKHVFCYDCA-------------------------ILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCT---TTCSBCSEEEE---EE--TTCCEEEHHHH-------------------------HHHHHTTCCBCTTTCCBCSE
T ss_pred ecC---ccCCCeEEEee---ec--cccccHHHHHH-------------------------HHHHhccCCCCcCcCCeeee
Confidence 576 58777664321 11 69999999983 23445677999999999998
Q ss_pred cC
Q 043224 295 NG 296 (516)
Q Consensus 295 n~ 296 (516)
.+
T Consensus 50 Ve 51 (101)
T 3vk6_A 50 IE 51 (101)
T ss_dssp EE
T ss_pred eE
Confidence 54
No 96
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.92 E-value=0.24 Score=38.15 Aligned_cols=33 Identities=24% Similarity=0.764 Sum_probs=24.6
Q ss_pred cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceecCC
Q 043224 239 ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGG 297 (516)
Q Consensus 239 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn~G 297 (516)
+|||.||..|. ..|. ..+ ..||-|+..|....|
T Consensus 43 ~C~H~fh~~Ci------------~~w~-------------~~~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCV------------DKWL-------------KAN-RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHH------------HHHH-------------HHC-SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHH------------HHHH-------------HcC-CcCcCcCCcCCCCCC
Confidence 69999999985 2333 222 589999999987766
No 97
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.70 E-value=0.26 Score=37.49 Aligned_cols=50 Identities=30% Similarity=0.652 Sum_probs=32.8
Q ss_pred CcccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHh--cCcccCCCCC
Q 043224 212 RVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWIS--SHTKPCPKCC 289 (516)
Q Consensus 212 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~--~ntK~CPkC~ 289 (516)
....|| -|...+.. .+.-+|||.||..|... |+. .....||.|+
T Consensus 19 ~~~~C~---IC~~~~~~------~~~~~CgH~fC~~Ci~~-------------------------~~~~~~~~~~CP~Cr 64 (73)
T 2ysl_A 19 EEVICP---ICLDILQK------PVTIDCGHNFCLKCITQ-------------------------IGETSCGFFKCPLCK 64 (73)
T ss_dssp CCCBCT---TTCSBCSS------EEECTTCCEEEHHHHHH-------------------------HCSSSCSCCCCSSSC
T ss_pred cCCEec---cCCcccCC------eEEcCCCChhhHHHHHH-------------------------HHHcCCCCCCCCCCC
Confidence 334687 47654431 24448999999999632 222 2456899999
Q ss_pred ccceec
Q 043224 290 KPIEKN 295 (516)
Q Consensus 290 ~~IEKn 295 (516)
.+|.++
T Consensus 65 ~~~~~~ 70 (73)
T 2ysl_A 65 TSVRKN 70 (73)
T ss_dssp CCCCCC
T ss_pred CcCCcc
Confidence 998764
No 98
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=87.47 E-value=0.16 Score=44.37 Aligned_cols=44 Identities=30% Similarity=0.726 Sum_probs=30.0
Q ss_pred cCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 215 WCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
.|| -|...+.. .|.-+|||.||..|-. .| +. ....||.|+.+|.
T Consensus 55 ~C~---iC~~~~~~------~~~~~CgH~fc~~Ci~------------~~-------------~~-~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCI---ICSEYFIE------AVTLNCAHSFCSYCIN------------EW-------------MK-RKIECPICRKDIK 98 (138)
T ss_dssp BCT---TTCSBCSS------EEEETTSCEEEHHHHH------------HH-------------TT-TCSBCTTTCCBCC
T ss_pred CCc---ccCcccCC------ceECCCCCCccHHHHH------------HH-------------HH-cCCcCCCCCCcCC
Confidence 588 58665431 2566899999999952 22 22 2367999999885
No 99
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=85.54 E-value=0.4 Score=39.73 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=32.5
Q ss_pred ccCCCCCCCCceEeecCCCcceeec-cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccc
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVEC-ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPI 292 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~I 292 (516)
..|| -|...+.. .+.. +|||.||..|.. . |+..+ ..||.|+..+
T Consensus 16 ~~C~---IC~~~~~~------p~~~~~CgH~fC~~Ci~------------~-------------~~~~~-~~CP~Cr~~~ 60 (108)
T 2ckl_A 16 LMCV---LCGGYFID------ATTIIECLHSFCKTCIV------------R-------------YLETS-KYCPICDVQV 60 (108)
T ss_dssp TBCT---TTSSBCSS------EEEETTTCCEEEHHHHH------------H-------------HHTSC-SBCTTTCCBS
T ss_pred CCCc---cCChHHhC------cCEeCCCCChhhHHHHH------------H-------------HHHhC-CcCcCCCccc
Confidence 3588 58666532 2565 799999999942 2 33322 7899999988
Q ss_pred eecC
Q 043224 293 EKNG 296 (516)
Q Consensus 293 EKn~ 296 (516)
....
T Consensus 61 ~~~~ 64 (108)
T 2ckl_A 61 HKTR 64 (108)
T ss_dssp CSSC
T ss_pred cccC
Confidence 7643
No 100
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.51 E-value=0.34 Score=37.00 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=31.4
Q ss_pred ccCCCCCCCCceEeecCCCcceeec-cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccc
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVEC-ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPI 292 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~I 292 (516)
..|| -|...+.. .+.- +|||.||..|. ..|. .. ...||.|+.+|
T Consensus 16 ~~C~---IC~~~~~~------p~~~~~CgH~fC~~Ci------------~~~~-------------~~-~~~CP~Cr~~~ 60 (72)
T 2djb_A 16 ILCS---ICKGYLID------ATTITECLHTFCKSCI------------VRHF-------------YY-SNRCPKCNIVV 60 (72)
T ss_dssp GSCT---TTSSCCSS------CEECSSSCCEECHHHH------------HHHH-------------HH-CSSCTTTCCCC
T ss_pred CCCC---CCChHHHC------cCEECCCCCHHHHHHH------------HHHH-------------Hc-CCcCCCcCccc
Confidence 4577 47554432 2455 69999999984 2332 22 37899999998
Q ss_pred eecC
Q 043224 293 EKNG 296 (516)
Q Consensus 293 EKn~ 296 (516)
.+..
T Consensus 61 ~~~~ 64 (72)
T 2djb_A 61 HQTQ 64 (72)
T ss_dssp CSSC
T ss_pred Cccc
Confidence 7643
No 101
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.35 E-value=0.45 Score=37.51 Aligned_cols=55 Identities=27% Similarity=0.457 Sum_probs=33.5
Q ss_pred cccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccc
Q 043224 213 VKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPI 292 (516)
Q Consensus 213 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~I 292 (516)
...|| -|...+.... ...+.-+|||.||..|. .+|.... .+...||.|+.++
T Consensus 15 ~~~C~---IC~~~~~~~~--~~~~~~~CgH~fC~~Ci------------~~~~~~~-----------~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECP---ICMESFTEEQ--LRPKLLHCGHTICRQCL------------EKLLASS-----------INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCT---TTCCBCCTTS--SCEEECSSSCEEEHHHH------------HHHHHHC-----------SSCBCCTTTCCCB
T ss_pred CCCCc---cCCccccccC--CCeEECCCCChhhHHHH------------HHHHHcC-----------CCCcCCCCCCCcc
Confidence 34587 4765544322 11244579999999995 2232210 1367999999988
Q ss_pred eec
Q 043224 293 EKN 295 (516)
Q Consensus 293 EKn 295 (516)
...
T Consensus 67 ~~~ 69 (88)
T 2ct2_A 67 RIT 69 (88)
T ss_dssp CCS
T ss_pred cch
Confidence 654
No 102
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=84.90 E-value=0.34 Score=40.96 Aligned_cols=28 Identities=36% Similarity=0.820 Sum_probs=19.6
Q ss_pred cccCCCCCCCCceEeecCCCcceeeccCCcccccccc
Q 043224 213 VKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCS 249 (516)
Q Consensus 213 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~ 249 (516)
...|| -|...+.. .|..+|||.||..|.
T Consensus 18 ~~~C~---IC~~~~~~------p~~~~CgH~fC~~Ci 45 (118)
T 3hct_A 18 KYECP---ICLMALRE------AVQTPCGHRFCKACI 45 (118)
T ss_dssp GGBCT---TTCSBCSS------EEECTTSCEEEHHHH
T ss_pred CCCCC---cCChhhcC------eEECCcCChhhHHHH
Confidence 34687 57766532 255689999999985
No 103
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=84.32 E-value=0.54 Score=41.72 Aligned_cols=47 Identities=21% Similarity=0.552 Sum_probs=32.2
Q ss_pred cCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCcccee
Q 043224 215 WCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEK 294 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEK 294 (516)
.|| -|...+.. .|.-+|||.||..|.. .|+..+...||.|+.++..
T Consensus 80 ~C~---IC~~~~~~------pv~~~CgH~fC~~Ci~-------------------------~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 80 MCV---CCQELVYQ------PVTTECFHNVCKDCLQ-------------------------RSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp BCT---TTSSBCSS------EEECTTSCEEEHHHHH-------------------------HHHHTTCCBCTTTCCBCCT
T ss_pred Eee---cCChhhcC------CEEcCCCCchhHHHHH-------------------------HHHHhCCCcCCCCCccCCC
Confidence 588 58665532 2445799999999851 2444445689999998875
Q ss_pred c
Q 043224 295 N 295 (516)
Q Consensus 295 n 295 (516)
.
T Consensus 126 ~ 126 (150)
T 1z6u_A 126 N 126 (150)
T ss_dssp T
T ss_pred C
Confidence 4
No 104
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=84.28 E-value=0.49 Score=33.72 Aligned_cols=29 Identities=28% Similarity=0.659 Sum_probs=21.0
Q ss_pred cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 239 ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 239 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
+|||.||..|. .+ |+..+ ..||-|+.+|.
T Consensus 26 ~CgH~fc~~Ci------------~~-------------~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 26 PCGHLLHRTCY------------EE-------------MLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp TTSCEEETTHH------------HH-------------HHHHT-CCCTTSCCSSC
T ss_pred CCCCcccHHHH------------HH-------------HHHcC-CcCCCCCCcCC
Confidence 59999999985 22 33333 78999998763
No 105
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.96 E-value=0.67 Score=36.01 Aligned_cols=52 Identities=25% Similarity=0.545 Sum_probs=31.3
Q ss_pred ccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
..|| -|...+.. .+.-+|||.||..|.. .|..... .......||.|+.++.
T Consensus 20 ~~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~------------~~~~~~~--------~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCP---ICLELLKE------PVSADCNHSFCRACIT------------LNYESNR--------NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCT---TTCSCCSS------CEECTTSCCBCHHHHH------------HHHHHSB--------CTTSCBCCTTTCCCCC
T ss_pred CCCc---CCChhhCc------ceeCCCCCHHHHHHHH------------HHHHhcc--------CCCCCCCCCCCCCcCC
Confidence 3577 47555421 2456799999999852 2221100 0113679999999887
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
.
T Consensus 71 ~ 71 (85)
T 2ecw_A 71 F 71 (85)
T ss_dssp T
T ss_pred H
Confidence 5
No 106
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=83.91 E-value=0.37 Score=43.40 Aligned_cols=32 Identities=31% Similarity=0.691 Sum_probs=22.6
Q ss_pred CcccCCCCCCCCceEeecCCCcceeeccCCccccccccccc
Q 043224 212 RVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVA 252 (516)
Q Consensus 212 ~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~ 252 (516)
...-|| -|...+.. .|.++||+.||..|...|
T Consensus 17 ~~~~C~---IC~~~~~~------pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 17 SKYECP---ICLMALRE------AVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGGBCT---TTCSBCSS------EEECTTSCEEEHHHHHHH
T ss_pred CCCCCC---CCChhhcC------cEECCCCCHHHHHHHHHH
Confidence 334687 58766542 267899999999997544
No 107
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.52 E-value=0.64 Score=33.73 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=21.7
Q ss_pred cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCcccee
Q 043224 239 ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEK 294 (516)
Q Consensus 239 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEK 294 (516)
+|||.||..|... ....||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~-----------------------------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEA-----------------------------SGMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSS-----------------------------SSSSCSSCCSSSSC
T ss_pred CCCCcccHHHHcc-----------------------------CCCCCCcCCcEeec
Confidence 6999999999744 13689999998864
No 108
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.30 E-value=0.25 Score=36.54 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=24.4
Q ss_pred cccCCCCCccceecCCCCceeecccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEY 317 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w 317 (516)
.-.||-|...+.. .++-.|||.||+.|+..|
T Consensus 20 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 20 EVICPICLDILQK-----PVTIDCGHNFCLKCITQI 50 (63)
T ss_dssp CCBCTTTCSBCSS-----CEECTTSSEECHHHHHHH
T ss_pred CCCCCcCCchhCC-----eEEeCCCCcchHHHHHHH
Confidence 4579999877663 344489999999999887
No 109
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=82.72 E-value=0.62 Score=39.03 Aligned_cols=47 Identities=26% Similarity=0.537 Sum_probs=30.7
Q ss_pred cCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCcccee
Q 043224 215 WCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEK 294 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEK 294 (516)
.|| -|...+.. .+.-+|||.||..|.. . |+......||.|+.++..
T Consensus 25 ~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~------------~-------------~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 25 SCQ---ICEHILAD------PVETSCKHLFCRICIL------------R-------------CLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp BCT---TTCSBCSS------EEECTTSCEEEHHHHH------------H-------------HHHHTCSBCTTTCCBCCG
T ss_pred CCC---CCCcHhcC------cEEcCCCCcccHHHHH------------H-------------HHhHCcCcCCCCCCCCCH
Confidence 588 58666531 2455799999999852 2 333224579999888765
Q ss_pred c
Q 043224 295 N 295 (516)
Q Consensus 295 n 295 (516)
.
T Consensus 71 ~ 71 (116)
T 1rmd_A 71 T 71 (116)
T ss_dssp G
T ss_pred h
Confidence 3
No 110
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.52 E-value=0.76 Score=37.98 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=30.2
Q ss_pred cCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhc--CcccCCCCCccc
Q 043224 215 WCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISS--HTKPCPKCCKPI 292 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~--ntK~CPkC~~~I 292 (516)
.|| -|...+.. .+.-+|||.||..|.. . |+.. ....||.|+.++
T Consensus 23 ~C~---IC~~~~~~------p~~~~CgH~fC~~Ci~------------~-------------~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 23 ECP---ICLELIKE------PVSTKCDHIFCKFCML------------K-------------LLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp SCS---SSCCCCSS------CCBCTTSCCCCSHHHH------------H-------------HHHSSSSSCCCTTTSCCC
T ss_pred CCc---ccChhhcC------eEECCCCCHHHHHHHH------------H-------------HHHhCCCCCCCcCCCCcC
Confidence 588 57665421 1334799999999952 2 3322 235899999988
Q ss_pred eec
Q 043224 293 EKN 295 (516)
Q Consensus 293 EKn 295 (516)
...
T Consensus 69 ~~~ 71 (112)
T 1jm7_A 69 TKR 71 (112)
T ss_dssp CTT
T ss_pred CHh
Confidence 753
No 111
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.43 E-value=1.8 Score=30.76 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.|..+.++ |.+.+.|+..|+..+||.++.++.+++
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4456667665 899999999999999999999988874
No 112
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=82.37 E-value=0.65 Score=33.09 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=22.9
Q ss_pred CcccCCCCCc-cceecCCCCceee-cccccc
Q 043224 281 HTKPCPKCCK-PIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 281 ntK~CPkC~~-~IEKn~GCnhMtC-~C~~~F 309 (516)
+...||.|+. .+.-+..=..+.| .||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4578999998 8887766677999 798754
No 113
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.25 E-value=0.41 Score=34.40 Aligned_cols=29 Identities=34% Similarity=0.731 Sum_probs=20.7
Q ss_pred cCcccCCCCCccce-ecCCCCceee-cccccc
Q 043224 280 SHTKPCPKCCKPIE-KNGGCNMVRC-KCGITF 309 (516)
Q Consensus 280 ~ntK~CPkC~~~IE-Kn~GCnhMtC-~C~~~F 309 (516)
...+.||+|+..+. .+.+ +.+.| +||+.+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~-~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHG-DRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSSCEEEECS-SEEECSSSCCEE
T ss_pred EecccCCCCCCceEEecCC-CeEECCCCCCEE
Confidence 45689999998543 3333 78999 899754
No 114
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.20 E-value=0.68 Score=35.70 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=30.0
Q ss_pred ccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
.-|| -|...+.... ..+.-+|||.||..|.. + |+..+ ..||-|+..|.
T Consensus 16 ~~C~---IC~~~~~~~~---~~~~~~C~H~fc~~Ci~------------~-------------~~~~~-~~CP~Cr~~~~ 63 (78)
T 2ect_A 16 LECP---VCKEDYALGE---SVRQLPCNHLFHDSCIV------------P-------------WLEQH-DSCPVCRKSLT 63 (78)
T ss_dssp CCCT---TTTSCCCTTS---CEEECTTSCEEETTTTH------------H-------------HHTTT-CSCTTTCCCCC
T ss_pred CCCe---eCCccccCCC---CEEEeCCCCeecHHHHH------------H-------------HHHcC-CcCcCcCCccC
Confidence 3576 4655543221 12333699999999962 2 33222 68999999886
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
.
T Consensus 64 ~ 64 (78)
T 2ect_A 64 G 64 (78)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.16 E-value=0.62 Score=34.73 Aligned_cols=52 Identities=27% Similarity=0.554 Sum_probs=31.0
Q ss_pred ccCCCCCCCCceEeecCC-CcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccc
Q 043224 214 KWCPSVPHCGNAIQVEAD-ELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPI 292 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~-~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~I 292 (516)
..|| -|...+..... ....+.-+|||.||..|. ..|. .. ...||.|+.+|
T Consensus 16 ~~C~---IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci------------~~~~-------------~~-~~~CP~Cr~~~ 66 (69)
T 2ea6_A 16 VSCP---ICMDGYSEIVQNGRLIVSTECGHVFCSQCL------------RDSL-------------KN-ANTCPTCRKKI 66 (69)
T ss_dssp CCCT---TTCCCHHHHTTTTCCEEECSSSCEEEHHHH------------HHHH-------------HH-CSSCTTTCCCC
T ss_pred CCCc---ccCccccccccccCCeEeCCCCChhcHHHH------------HHHH-------------Hc-CCCCCCCCCcc
Confidence 3576 46655443211 112244469999999985 2232 22 36899999988
Q ss_pred ee
Q 043224 293 EK 294 (516)
Q Consensus 293 EK 294 (516)
.+
T Consensus 67 ~~ 68 (69)
T 2ea6_A 67 NH 68 (69)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 116
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=82.10 E-value=0.7 Score=36.88 Aligned_cols=47 Identities=23% Similarity=0.520 Sum_probs=30.1
Q ss_pred ccCCCCCCCCceEeecCCCcceeecc-CCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccc
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECA-CGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPI 292 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~I 292 (516)
.-|| -|...+.. .|.-+ |||.||..|... |.. ..+...||.|+.++
T Consensus 14 ~~C~---IC~~~~~~------p~~~~~CgH~fC~~Ci~~------------~~~------------~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCL---ICKDIMTD------AVVIPCCGNSYCDECIRT------------ALL------------ESDEHTCPTCHQND 60 (92)
T ss_dssp TEET---TTTEECSS------CEECTTTCCEECHHHHHH------------HHH------------HCTTCCCTTTCCSS
T ss_pred CCCC---CCChhhcC------ceECCCCCCHHHHHHHHH------------HHH------------hcCCCcCcCCCCcC
Confidence 3577 57765531 15567 999999998522 211 22347899999876
Q ss_pred e
Q 043224 293 E 293 (516)
Q Consensus 293 E 293 (516)
.
T Consensus 61 ~ 61 (92)
T 3ztg_A 61 V 61 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=81.90 E-value=0.43 Score=35.02 Aligned_cols=30 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred cCcccCCCCCccceecCCCCceee-cccccc
Q 043224 280 SHTKPCPKCCKPIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 280 ~ntK~CPkC~~~IEKn~GCnhMtC-~C~~~F 309 (516)
...+.||+|+..+.=...-+.+.| +|++.+
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 346899999974431122368999 899874
No 118
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.62 E-value=0.91 Score=34.56 Aligned_cols=49 Identities=24% Similarity=0.606 Sum_probs=30.4
Q ss_pred ccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
..|| -|...+.... ..+..+|||.||..|. .+| +..+ ..||-|+.+|.
T Consensus 16 ~~C~---IC~~~~~~~~---~~~~~~C~H~f~~~Ci------------~~~-------------~~~~-~~CP~Cr~~~~ 63 (74)
T 2ep4_A 16 ELCA---VCLEDFKPRD---ELGICPCKHAFHRKCL------------IKW-------------LEVR-KVCPLCNMPVL 63 (74)
T ss_dssp CBCS---SSCCBCCSSS---CEEEETTTEEEEHHHH------------HHH-------------HHHC-SBCTTTCCBCS
T ss_pred CCCc---CCCcccCCCC---cEEEcCCCCEecHHHH------------HHH-------------HHcC-CcCCCcCcccc
Confidence 3576 4665543221 2244579999999985 223 3222 48999999886
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
.
T Consensus 64 ~ 64 (74)
T 2ep4_A 64 Q 64 (74)
T ss_dssp S
T ss_pred c
Confidence 4
No 119
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.41 E-value=0.8 Score=43.92 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=37.7
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
....|.||.+-+..+ ... .|+|.|...|+..|+... ...+||. |+..++.
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~------~~~~CP~--C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC------SSCBCTT--TCCBCCS
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC------CCCCCCC--CCCCCCC
Confidence 356899999987643 222 499999999999998652 2468996 9887664
No 120
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=81.41 E-value=0.46 Score=36.64 Aligned_cols=27 Identities=30% Similarity=0.792 Sum_probs=22.1
Q ss_pred cCCcc-cccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceec
Q 043224 239 ACGFQ-FCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKN 295 (516)
Q Consensus 239 ~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn 295 (516)
+|||. ||..|...| +.||-|+.+|.+.
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITFK 68 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSEE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccCc
Confidence 79999 999995432 6899999998753
No 121
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.26 E-value=0.91 Score=38.18 Aligned_cols=43 Identities=30% Similarity=0.653 Sum_probs=29.9
Q ss_pred cCCCCCCCCceEeecCCCcceeec-cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccce
Q 043224 215 WCPSVPHCGNAIQVEADELCEVEC-ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIE 293 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C-~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IE 293 (516)
.|| -|...+.. + |.- +|||.||..|...|-. ..||.|+.++.
T Consensus 24 ~C~---IC~~~~~~-----p-v~~~~CgH~fC~~Ci~~~~~----------------------------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 24 RCS---RCTNILRE-----P-VCLGGCEHIFCSNCVSDCIG----------------------------TGCPVCYTPAW 66 (117)
T ss_dssp SCS---SSCSCCSS-----C-BCCCSSSCCBCTTTGGGGTT----------------------------TBCSSSCCBCS
T ss_pred CCC---CCChHhhC-----c-cEeCCCCCHHHHHHHHHHhc----------------------------CCCcCCCCcCc
Confidence 588 58666532 1 333 7999999999755421 57999998875
Q ss_pred e
Q 043224 294 K 294 (516)
Q Consensus 294 K 294 (516)
.
T Consensus 67 ~ 67 (117)
T 1jm7_B 67 I 67 (117)
T ss_dssp C
T ss_pred c
Confidence 3
No 122
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=80.65 E-value=0.54 Score=37.53 Aligned_cols=35 Identities=26% Similarity=0.701 Sum_probs=28.7
Q ss_pred cCcccCCCCCccceecCCCCceee-cccccccccccccc
Q 043224 280 SHTKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLEY 317 (516)
Q Consensus 280 ~ntK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~w 317 (516)
...-.||.|+....+..+=..+.| .|++.|- ++.|
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay 60 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSY 60 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSS
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec---CCEe
Confidence 346799999999999888889999 7998873 5555
No 123
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=79.73 E-value=0.4 Score=42.11 Aligned_cols=30 Identities=23% Similarity=0.721 Sum_probs=21.3
Q ss_pred cccCCCCCCCCceEeecCCCcceeeccCCcccccccccc
Q 043224 213 VKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSV 251 (516)
Q Consensus 213 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~ 251 (516)
..-|| -|..++.. .|..+|||.||..|-..
T Consensus 31 ~~~C~---IC~~~~~~------pv~~~CgH~FC~~Ci~~ 60 (141)
T 3knv_A 31 KYLCS---ACRNVLRR------PFQAQCGHRYCSFCLAS 60 (141)
T ss_dssp GGBCT---TTCSBCSS------EEECTTSCEEEHHHHHH
T ss_pred CcCCC---CCChhhcC------cEECCCCCccCHHHHHH
Confidence 34688 58776542 26678999999999643
No 124
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=79.32 E-value=0.51 Score=33.66 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=26.4
Q ss_pred cccCCCCCccceecCCCCceee-ccccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLEYS 318 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~w~ 318 (516)
...||-|...+..... .+.- .|||.||..|+..|.
T Consensus 5 ~~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 5 GVECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWL 40 (55)
T ss_dssp SCCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTT
T ss_pred CCcCccCCccccCCCc--eEECCCCCCcccHHHHHHHH
Confidence 4679999888765442 3444 499999999999984
No 125
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=77.33 E-value=1.1 Score=37.21 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=24.2
Q ss_pred cCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceecCC
Q 043224 239 ACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGG 297 (516)
Q Consensus 239 ~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn~G 297 (516)
+|||.||..|.. .|..... ......||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~------------~wl~~~~---------~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLL------------AMYCNGN---------KDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHH------------HHHHHTC---------CSSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHH------------HHHHccc---------CCCCCcCCCCCCccCCCCC
Confidence 599999999952 2321000 0234689999998876433
No 126
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=77.31 E-value=0.6 Score=35.86 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=24.3
Q ss_pred ccCCCCCccceecCCCCceeec-cccccccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRCK-CGITFNWISGLEYS 318 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC~-C~~~FCw~C~~~w~ 318 (516)
-.||-|...+.. .++-. |||.||+.|+..|-
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 16 LLCLICKDIMTD-----AVVIPCCGNSYCDECIRTAL 47 (74)
T ss_dssp GSCSSSCCCCTT-----CEECSSSCCEECTTHHHHHH
T ss_pred CCCcCCChHHhC-----CeEcCCCCCHHHHHHHHHHH
Confidence 579999877652 45566 99999999998884
No 127
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.72 E-value=0.58 Score=35.53 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=24.3
Q ss_pred cccCCCCCccceecCCCCceeeccccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
...||-|...+.. -++-.|||.||+.|+..|.
T Consensus 15 ~~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 15 VPECAICLQTCVH-----PVSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CCBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCT
T ss_pred CCCCccCCcccCC-----CEEccCCCHHHHHHHHHHH
Confidence 3579999876643 2445899999999999884
No 128
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=76.65 E-value=0.45 Score=35.89 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=27.6
Q ss_pred CcccCCCCCccceec--CCCCceeeccccccccccccccc
Q 043224 281 HTKPCPKCCKPIEKN--GGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 281 ntK~CPkC~~~IEKn--~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
....||-|...+... +|-..+.-.|||.||+.|+..|-
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH
Confidence 356799999887653 33222333899999999999984
No 129
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=75.92 E-value=5.5 Score=27.12 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHh
Q 043224 57 GDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
+.|.++.+ +|.+.+.|...|+..+||.+..++-++
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45777777 599999999999999999999988776
No 130
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.84 E-value=0.52 Score=33.96 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=24.1
Q ss_pred cccCCCCCccceecCCCCceeecccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEY 317 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w 317 (516)
.-.||-|...+... ++-.|||.||+.|+..|
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 35799998777542 33479999999999987
No 131
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=75.09 E-value=0.54 Score=36.22 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=23.1
Q ss_pred ccCCCCCccceecCCCCceeecccccccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEY 317 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w 317 (516)
-.||-|...+.. -++-.|||.||+.|+..|
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~ 42 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVS 42 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHH
Confidence 569999876643 344589999999999976
No 132
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=75.08 E-value=1.5 Score=33.56 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=23.1
Q ss_pred CcccCCCCCccceecCCCCceee-cccccc
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC-~C~~~F 309 (516)
..-.||.|+.+.+-+.+...+.| .||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 34689999999998888888888 576544
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=74.73 E-value=2.1 Score=41.15 Aligned_cols=48 Identities=6% Similarity=-0.026 Sum_probs=30.3
Q ss_pred cccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccc
Q 043224 213 VKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPI 292 (516)
Q Consensus 213 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~I 292 (516)
...|| -|..++.- .|+-+|||.||..|-. .|+..+...||.|+.++
T Consensus 208 ~~~c~---i~~~~~~d------Pv~~~~gh~f~~~~i~-------------------------~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 208 YLCGK---ISFELMRE------PCITPSGITYDRKDIE-------------------------EHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp TTBCT---TTCSBCSS------EEECSSCCEEETTHHH-------------------------HHHHHTCSSCTTTCCCC
T ss_pred ccCCc---CcCCHhcC------CeECCCCCEECHHHHH-------------------------HHHHHCCCCCcCCCCCC
Confidence 44576 46555432 2666799999998841 23333334499999888
Q ss_pred ee
Q 043224 293 EK 294 (516)
Q Consensus 293 EK 294 (516)
..
T Consensus 254 ~~ 255 (281)
T 2c2l_A 254 TQ 255 (281)
T ss_dssp CG
T ss_pred ch
Confidence 54
No 134
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=73.89 E-value=2.6 Score=43.30 Aligned_cols=54 Identities=24% Similarity=0.522 Sum_probs=33.5
Q ss_pred hcCCCcccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCC
Q 043224 208 DDNRRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPK 287 (516)
Q Consensus 208 ~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPk 287 (516)
+......-|| -|-.... ..+.-+|||.||..|. .. |+......||-
T Consensus 327 e~~~~~~~C~---ICle~~~------~pv~lpCGH~FC~~Ci------------~~-------------wl~~~~~~CP~ 372 (389)
T 2y1n_A 327 EMGSTFQLCK---ICAENDK------DVKIEPCGHLMCTSCL------------TS-------------WQESEGQGCPF 372 (389)
T ss_dssp HTTTSSSBCT---TTSSSBC------CEEEETTCCEECHHHH------------HH-------------HHHHTCSBCTT
T ss_pred hhcCCCCCCC---ccCcCCC------CeEEeCCCChhhHHHH------------HH-------------HHhcCCCCCCC
Confidence 3333345687 4744331 1244579999999984 12 33334578999
Q ss_pred CCccceec
Q 043224 288 CCKPIEKN 295 (516)
Q Consensus 288 C~~~IEKn 295 (516)
|+.+|...
T Consensus 373 CR~~i~~~ 380 (389)
T 2y1n_A 373 CRCEIKGT 380 (389)
T ss_dssp TCCBCCEE
T ss_pred CCCccCCc
Confidence 99998753
No 135
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=73.87 E-value=0.62 Score=34.15 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.5
Q ss_pred ccCCCCCccceec--CCCCceeeccccccccccccccc
Q 043224 283 KPCPKCCKPIEKN--GGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 283 K~CPkC~~~IEKn--~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
-.||-|...+... ++-.-+.-.|||.||..|+..|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH
Confidence 4688888877653 22222333799999999999984
No 136
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=73.49 E-value=5.5 Score=30.83 Aligned_cols=36 Identities=8% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 57 GDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
+.|.++.+ +|.+.+.|+..|+..+||.++.++.++.
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34566666 4899999999999999999999998883
No 137
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=73.16 E-value=0.84 Score=34.08 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=24.4
Q ss_pred CcccCCCCCccceecCCCCceee-ccccccccccccccc
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLEYS 318 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~w~ 318 (516)
....||-|...+.. -..- .|||.||+.|...|.
T Consensus 4 ~~~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 4 VAERCPICLEDPSN-----YSMALPCLHAFCYVCITRWI 37 (68)
T ss_dssp CCCCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHH
T ss_pred CCCCCeeCCccccC-----CcEecCCCCeeHHHHHHHHH
Confidence 34689999887642 1233 699999999998884
No 138
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.00 E-value=0.87 Score=34.27 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=24.5
Q ss_pred cccCCCCCccceecCCCCceeeccccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
...||-|...+.. +.=.|||.||+.|+..|.
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~ 45 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWS 45 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSS
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHH
Confidence 4679999876643 444799999999999984
No 139
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=71.97 E-value=0.76 Score=37.30 Aligned_cols=31 Identities=10% Similarity=0.248 Sum_probs=25.0
Q ss_pred ccCCCCCccceecCCCCceee-ccccccccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLEYS 318 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~w~ 318 (516)
-.||-|...+.. -++. .|||.||+.|...|-
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHH
Confidence 579999877653 4566 799999999999884
No 140
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=71.56 E-value=1.1 Score=33.63 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=25.4
Q ss_pred cccCCCCCccceecCCCCceeeccccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
...||-|...+.... ..+.-.|||.||+.|+..|.
T Consensus 14 ~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 14 EEKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp CCSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHH
T ss_pred CCCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHH
Confidence 468999988775332 22333799999999999984
No 141
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=71.01 E-value=1.3 Score=32.93 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=10.7
Q ss_pred ccCCCCCcccee
Q 043224 283 KPCPKCCKPIEK 294 (516)
Q Consensus 283 K~CPkC~~~IEK 294 (516)
+.||-|+.+|.+
T Consensus 45 ~~CPiCR~~i~~ 56 (63)
T 2vje_B 45 ASCPICKKEIQL 56 (63)
T ss_dssp CBCTTTCCBCCE
T ss_pred CcCCCcCchhhc
Confidence 789999999975
No 142
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.81 E-value=2.3 Score=32.16 Aligned_cols=32 Identities=28% Similarity=0.790 Sum_probs=25.7
Q ss_pred CcccccccccccCCCCeeecCC-CCcccHHHHHHHH
Q 043224 121 STFCCNICCDDVSPQEVTTMDC-GHCFCNNCWTEHF 155 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl 155 (516)
+..-|.||.++ ..+.-+.| +-.||..||++.=
T Consensus 7 e~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 45579999998 34666799 7899999999865
No 143
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.77 E-value=0.97 Score=35.06 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=23.7
Q ss_pred cccCCCCCccceecCCCCceeecccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEY 317 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w 317 (516)
.-.||-|...+.. .++-.|||.||..|+..|
T Consensus 19 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~ 49 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PLSLDCGHSFCQACLTAN 49 (85)
T ss_dssp CCCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHH
T ss_pred CCCCCCCCcccCC-----ceeCCCCCHHHHHHHHHH
Confidence 3579999887653 233479999999999887
No 144
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.04 E-value=0.94 Score=35.25 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=24.5
Q ss_pred cccCCCCCccceecCCCCceeeccccccccccccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
.-.||-|...+.. .++-.|||.||+.|+..|.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVVTKCRHYFCESCALEHF 46 (81)
T ss_dssp CSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHH
Confidence 3579999887743 2444799999999999984
No 145
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=67.56 E-value=10 Score=30.09 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.|.++.++ |++...|+..|+..+||.++.++.++.
T Consensus 32 ~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 32 SINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34556554 999999999999999999999998884
No 146
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=67.33 E-value=2.2 Score=33.09 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=27.1
Q ss_pred cccCCCCCccceecCCCCceeeccccccccccccccc--c
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS--N 319 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~--C 319 (516)
..+|..|+..++..+ +.|+|+..||-.=.-+-. |
T Consensus 25 ~nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy~e~H~C 60 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCRCGNLFCGLHRYSDKHNC 60 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECTTSCEECSSSCSTTTTTC
T ss_pred CCcChhhCCcccccC----eecCCCCEechhcCCCccCCC
Confidence 468999999988764 899999999987665543 7
No 147
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=66.79 E-value=0.54 Score=37.79 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=24.6
Q ss_pred ccCCCCCccceecCCCCceeeccccccccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
..||-|...+..... .+.-.|||.||+.|+..|-
T Consensus 41 ~~C~IC~~~~~~~~~--~~~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 41 MCCPICCSEYVKGDV--ATELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp SEETTTTEECCTTCE--EEEETTTEEEEHHHHHHHH
T ss_pred CCCcccChhhcCCCc--EEecCCCChHHHHHHHHHH
Confidence 569999877654332 2233699999999999984
No 148
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=66.50 E-value=14 Score=26.99 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 53 AAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 53 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
..+++.|..++...|++..-+...|...+||-++.+..|.+
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35677899999999999999999999999999999988873
No 149
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=66.25 E-value=6 Score=38.54 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 53 AAQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 53 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
..+++.|.+.+.++|.++..|+..|..++||.+..++.||+
T Consensus 13 ~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~ 53 (270)
T 3bq3_A 13 SPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYD 53 (270)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34567799999999999999999999999999999999994
No 150
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=65.34 E-value=2.2 Score=33.36 Aligned_cols=30 Identities=33% Similarity=0.875 Sum_probs=22.8
Q ss_pred eeccCCcc-cccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceec
Q 043224 236 VECACGFQ-FCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKN 295 (516)
Q Consensus 236 v~C~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn 295 (516)
+.=+|||. ||..|...+ +.||-|+.+|.+.
T Consensus 32 v~~pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 32 TFCPCGHTVCCESCAAQL------------------------------QSCPVCRSRVEHV 62 (79)
T ss_dssp EEETTCBCCBCHHHHTTC------------------------------SBCTTTCCBCCEE
T ss_pred EEECCCCHHHHHHHHHhc------------------------------CcCCCCCchhhCe
Confidence 33379999 999996322 3899999999863
No 151
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=65.22 E-value=16 Score=26.91 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHh
Q 043224 54 AQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 54 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.+++.|..++...|+...-+...|...+||-++.+..|.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567789999999999999999999999999999998886
No 152
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=64.84 E-value=2 Score=35.72 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=23.4
Q ss_pred ccCCCCCccceecCCCCceeeccccccccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
-.||-|...+.. -++=.|||.||..|+..|.
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHH
Confidence 369999876653 2333799999999999884
No 153
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=64.78 E-value=2.6 Score=31.77 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=29.7
Q ss_pred CcccCCCCCccceecCCCCceeeccccccccccccccc--c--cccC
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS--N--GYIE 323 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~--C--~y~~ 323 (516)
.+.+|..|+..+... | +.|+|+..||-.=.-+-. | .|+.
T Consensus 14 ~~~rC~~C~kkvgl~-~---f~CrCg~~FC~~HRy~e~H~C~fDyk~ 56 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT-G---FMCRCGTTFCGSHRYPEVHGCTFDFKS 56 (64)
T ss_dssp SCCCCTTTCCCCCTT-C---EECSSSCEECTTTCSTTTTTCCCCCSC
T ss_pred cCCcChhhCCccCcc-C---EEeecCCEeccccCCcccCCCCchhhH
Confidence 457899999887766 2 899999999987766544 7 4544
No 154
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.74 E-value=9.5 Score=28.37 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.|.++.+ +|.+...|+..|+..+||.+..++.+++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 12 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4556666 5999999999999999999999988884
No 155
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.67 E-value=14 Score=27.65 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 57 GDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
+.|.++.+ +|.+...|+..|+..+||.++.++.+++
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34566665 5999999999999999999999988884
No 156
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=63.84 E-value=16 Score=26.14 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLLSL-KEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.|..+.++ |. +...++..|+..+||.++.++.+++
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4567777765 77 8999999999999999999998874
No 157
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.98 E-value=3.8 Score=32.40 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=27.2
Q ss_pred ccCCCCCccceecCCCCceee-cccc-----ccccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRC-KCGI-----TFNWISGLEYS 318 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC-~C~~-----~FCw~C~~~w~ 318 (516)
..||.|..+|+.++| +-.| .|+. -||-.|+++-.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHH
Confidence 579999999999888 6668 6854 37888888864
No 158
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=62.37 E-value=15 Score=26.22 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHhCCChHHHHHHHh
Q 043224 57 GDLLRVMDLLSL-KEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 57 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
+.|..+.++ |. +...+...|+..+||.++.++.++
T Consensus 14 ~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 14 QQLEQLSAM-GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456666664 88 889999999999999999998887
No 159
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.95 E-value=7.9 Score=31.00 Aligned_cols=53 Identities=28% Similarity=0.643 Sum_probs=38.9
Q ss_pred CCCceEeecCCCcceeecc-CCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceecCCC
Q 043224 221 HCGNAIQVEADELCEVECA-CGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGC 298 (516)
Q Consensus 221 ~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn~GC 298 (516)
-|+--|-.......-|-|. |+.-.|..|. ++ -++..++.||.|+.+..+..|+
T Consensus 21 iCGD~VG~~~~Ge~FVAC~eC~FPvCrpCy----------EY---------------ErkeG~q~CpqCktrYkr~kgs 74 (93)
T 1weo_A 21 ICGDQIGLTVEGDLFVACNECGFPACRPCY----------EY---------------ERREGTQNCPQCKTRYKRLRGS 74 (93)
T ss_dssp SSCCBCCBCSSSSBCCSCSSSCCCCCHHHH----------HH---------------HHHTSCSSCTTTCCCCCCCTTC
T ss_pred cccCccccCCCCCEEEeeeccCChhhHHHH----------HH---------------HHhccCccccccCCccccccCC
Confidence 5777777666566678997 9999998774 21 1245679999999998876664
No 160
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.15 E-value=2.2 Score=33.33 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=17.3
Q ss_pred CCCCceeeccccccccccccccc
Q 043224 296 GGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 296 ~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
+.+..+.-.|+|.|+..|+..|-
T Consensus 39 ~~~~~~~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 39 EDCVVVWGECNHSFHNCCMSLWV 61 (81)
T ss_dssp TTCCEEEETTSCEEEHHHHHHHT
T ss_pred CceEEEeCCCCCccChHHHHHHH
Confidence 44444555799999999999994
No 161
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.98 E-value=3.4 Score=31.15 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=28.9
Q ss_pred CcccCCCCCccceecCCCCceeeccccccccccccccc--c--cccC
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS--N--GYIE 323 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~--C--~y~~ 323 (516)
.+.+|..|+..+... -+.|+|+..||-.=.-+-. | .|+.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~e~H~C~fDyk~ 56 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSHRYPEKHECSFDFKE 56 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSSCSSTTTTCCCCCSC
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccCCCccccCCCcchhH
Confidence 457899999887655 2899999999987766544 7 4544
No 162
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.72 E-value=4 Score=32.54 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=29.0
Q ss_pred CcccCCCCCccceecCCCCceeeccccccccccccccc--c--cccC
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS--N--GYIE 323 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~--C--~y~~ 323 (516)
...+|..|+..+--.. -+.|+||..||-.=.-+-. | .|+.
T Consensus 24 ~~~rC~~C~kkvgl~~---~f~CrCg~~FC~~HRy~e~H~C~fDyK~ 67 (85)
T 1wff_A 24 IMKHCFLCGKKTGLAT---SFECRCGNNFCASHRYAEAHGCNYDYKS 67 (85)
T ss_dssp CCCBCSSSCCBCSSSS---CEECTTCCEECTTTCSTGGGTCCSCCSS
T ss_pred cCccchhhCCeecccC---CeEcCCCCEecccCCCccCCCCcchhhH
Confidence 4578999998766542 3899999999987665543 7 4543
No 163
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=59.33 E-value=4.7 Score=32.86 Aligned_cols=34 Identities=24% Similarity=0.569 Sum_probs=28.2
Q ss_pred ccCCCCCccceecCCCCceee-ccccc-----cccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRC-KCGIT-----FNWISGLEYS 318 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC-~C~~~-----FCw~C~~~w~ 318 (516)
..||.|...++.++| +..| .|+.. ||--|.++-.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHH
Confidence 799999999999988 6779 68654 5888888864
No 164
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=56.81 E-value=5.6 Score=30.33 Aligned_cols=28 Identities=21% Similarity=0.479 Sum_probs=20.0
Q ss_pred cccCCCCCccceecCCCCceee-cccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC-~C~~~F 309 (516)
.-.||.|+.+.+-+.+=..+.| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3579999999987665456777 565443
No 165
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=56.80 E-value=20 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 59 LLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 59 i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
|..+.+ +|.+...|+..|+..+||+++.++.+++
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 444554 5999999999999999999999988884
No 166
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=55.86 E-value=4.6 Score=31.27 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=29.3
Q ss_pred cCcccCCCCCccceecCCCCceeeccccccccccccccc--c--cccC
Q 043224 280 SHTKPCPKCCKPIEKNGGCNMVRCKCGITFNWISGLEYS--N--GYIE 323 (516)
Q Consensus 280 ~ntK~CPkC~~~IEKn~GCnhMtC~C~~~FCw~C~~~w~--C--~y~~ 323 (516)
..+.+|..|+..+... -+.|+|+..||-.=.-+-. | .|+.
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKCRCGSTFCGTHRYPESHECQFDFKG 66 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEECTTSCEECTTTCSTTTSCCCSCTTS
T ss_pred ccCccchhhcCccccc----ceEeccCCEeccccCCCcCCCCcCchhH
Confidence 3467899999887776 2899999999977665433 7 4543
No 167
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=55.73 E-value=5.9 Score=30.38 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=20.7
Q ss_pred CcccCCCCCccceecCCCCceee-cccccc
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC-~C~~~F 309 (516)
..-.||.|+.+.+-+.+=..+.| .||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 34589999999987765456777 565444
No 168
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=55.72 E-value=4.6 Score=40.78 Aligned_cols=30 Identities=30% Similarity=0.716 Sum_probs=23.4
Q ss_pred eeccCCcc-cccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceec
Q 043224 236 VECACGFQ-FCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKN 295 (516)
Q Consensus 236 v~C~Cg~~-fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn 295 (516)
|.=+|||. ||..|...+ +.||-|+.+|.+.
T Consensus 309 v~lpCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 309 VFIPCGHLVVCQECAPSL------------------------------RKCPICRGIIKGT 339 (345)
T ss_dssp EEETTCCEEECTTTGGGC------------------------------SBCTTTCCBCCEE
T ss_pred EEcCCCChhHhHHHHhcC------------------------------CcCCCCCCCccCe
Confidence 33479999 999996432 5899999999753
No 169
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=55.61 E-value=2.4 Score=35.93 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=0.0
Q ss_pred cCCCCceeeccccccccccccccc
Q 043224 295 NGGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 295 n~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
.+.|.-+.-.|+|.|+..|...|-
T Consensus 74 ~~~~~v~~~~C~H~FH~~CI~~Wl 97 (117)
T 4a0k_B 74 SEECTVAWGVCNHAFHFHCISRWL 97 (117)
T ss_dssp ------------------------
T ss_pred ccccccccCCcCceEcHHHHHHHH
Confidence 455666777899999999999995
No 170
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=55.17 E-value=6.6 Score=30.00 Aligned_cols=28 Identities=18% Similarity=0.511 Sum_probs=20.0
Q ss_pred cccCCCCCccceecCCCCceee-cccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC-~C~~~F 309 (516)
.-.||.|+.+.+-+.+=..+.| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4589999999886655456777 566443
No 171
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=55.09 E-value=12 Score=34.03 Aligned_cols=50 Identities=6% Similarity=-0.062 Sum_probs=31.4
Q ss_pred CCcccCCCCCCCCceEeecCCCcceeeccCCcccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCc
Q 043224 211 RRVKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCK 290 (516)
Q Consensus 211 ~~~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~ 290 (516)
+....|| =|..++.- .|.-+||+.||..|- ..|+..+...||.|+.
T Consensus 104 p~~f~CP---I~~elm~D------PV~~~~Ghtfer~~I-------------------------~~~l~~~~~tcP~t~~ 149 (179)
T 2f42_A 104 PDYLCGK---ISFELMRE------PCITPSGITYDRKDI-------------------------EEHLQRVGHFDPVTRS 149 (179)
T ss_dssp CGGGBCT---TTCSBCSS------EEECTTSCEEEHHHH-------------------------HHHHHHTCSBCTTTCC
T ss_pred cHhhccc---CccccCCC------CeECCCCCEECHHHH-------------------------HHHHHhCCCCCCCCcC
Confidence 3445788 46665542 255579999999874 1233333236999998
Q ss_pred ccee
Q 043224 291 PIEK 294 (516)
Q Consensus 291 ~IEK 294 (516)
++..
T Consensus 150 ~l~~ 153 (179)
T 2f42_A 150 PLTQ 153 (179)
T ss_dssp BCCG
T ss_pred CCCh
Confidence 7753
No 172
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.14 E-value=2.9 Score=31.85 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=27.9
Q ss_pred CcccCCCCCccceecC--CCCceeeccccccccccccccc--c--cccC
Q 043224 281 HTKPCPKCCKPIEKNG--GCNMVRCKCGITFNWISGLEYS--N--GYIE 323 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~--GCnhMtC~C~~~FCw~C~~~w~--C--~y~~ 323 (516)
...+|-.|+..+.-.+ | +.|+||..||-.=.-+-. | .|+.
T Consensus 14 ~~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~HRy~e~H~C~fDyk~ 59 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQEL---GSCRCGYVFCMLHRLPEQHDCTFDHMG 59 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHH---HCCSSSCCCCTTTCSTGGGTCSSCSSC
T ss_pred cCCcchhhCCeecccccCc---eEecCCCEehhccCCccccCCcccccc
Confidence 4568888888776542 3 678999999987665433 7 4543
No 173
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=49.79 E-value=9.8 Score=31.87 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=22.3
Q ss_pred CcccCCCCCcccee-c---CCCCceee-cccccc
Q 043224 281 HTKPCPKCCKPIEK-N---GGCNMVRC-KCGITF 309 (516)
Q Consensus 281 ntK~CPkC~~~IEK-n---~GCnhMtC-~C~~~F 309 (516)
..+.||.|+.++.- . .|.+.+.| .|+|.+
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 35789999987643 2 36889999 799876
No 174
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.97 E-value=31 Score=27.18 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.|.++.+ +|.+...|+..|+..+||++..++-+++
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4555666 5999999999999999999999988884
No 175
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=48.32 E-value=9.3 Score=29.02 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=20.4
Q ss_pred CcccCCCCCccceecCCCCceee-cccccc
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC-~C~~~F 309 (516)
..-.||.|+.+++-+..=+.+.| .||..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 34589999999987655456777 565443
No 176
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.22 E-value=26 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLL-SLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.++|..+.+++ +++....+..|+..+.|++..++.+.+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35566788888 899999999999999999999999874
No 177
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.98 E-value=37 Score=26.90 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.|.++.+ +|++...|+..|+..+||.+..++-+++
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445677776 5999999999999999999999998884
No 178
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=46.68 E-value=9.2 Score=33.09 Aligned_cols=30 Identities=13% Similarity=0.430 Sum_probs=22.5
Q ss_pred cCcccCCCCCccce-ec---CCCCceee-cccccc
Q 043224 280 SHTKPCPKCCKPIE-KN---GGCNMVRC-KCGITF 309 (516)
Q Consensus 280 ~ntK~CPkC~~~IE-Kn---~GCnhMtC-~C~~~F 309 (516)
...+.||.|+...- +. .|.+.+.| +|+|.+
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 45799999997653 22 37889999 799865
No 179
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.47 E-value=33 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCHHH-HHHHHHHhCCChHHHHHHHhh
Q 043224 57 GDLLRVMDLLSLKEKH-ARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~-a~~LL~~~~W~~~~l~e~~~e 93 (516)
+.|..+.++ |.+... ++..|+..+||+++.++.++.
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 346666665 886554 599999999999999999884
No 180
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=44.71 E-value=5.5 Score=33.00 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=17.5
Q ss_pred CCCCceeeccccccccccccccc
Q 043224 296 GGCNMVRCKCGITFNWISGLEYS 318 (516)
Q Consensus 296 ~GCnhMtC~C~~~FCw~C~~~w~ 318 (516)
++|.-+.-.|+|.|+..|+..|-
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl 86 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWL 86 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHH
T ss_pred ccceEeecccCcEECHHHHHHHH
Confidence 45655666899999999999984
No 181
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=44.11 E-value=8.7 Score=26.90 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 57 GDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
+.|.++.+ +|.+...|...|...+||.+...+-+++
T Consensus 6 eaI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555544 4999999999999999999999888873
No 182
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=43.53 E-value=12 Score=30.42 Aligned_cols=28 Identities=14% Similarity=-0.081 Sum_probs=18.2
Q ss_pred cccCCCCCCCCceEeecCCCcceeeccCCcccccccc
Q 043224 213 VKWCPSVPHCGNAIQVEADELCEVECACGFQFCFSCS 249 (516)
Q Consensus 213 ~~~CP~~p~C~~~i~~~~~~~~~v~C~Cg~~fC~~C~ 249 (516)
...|| -|..++.- .|.-+||+.||..|-
T Consensus 29 ~~~Cp---I~~~~m~d------PV~~~cGhtf~r~~I 56 (100)
T 2kre_A 29 EFRDP---LMDTLMTD------PVRLPSGTIMDRSII 56 (100)
T ss_dssp TTBCT---TTCSBCSS------EEEETTTEEEEHHHH
T ss_pred hhCCc---CccCcccC------CeECCCCCEEchHHH
Confidence 34677 46555432 255569999999884
No 183
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=43.36 E-value=56 Score=24.33 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHh
Q 043224 54 AQMGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 54 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.|...+++...-++..|+-||-||---+|+....+..|-
T Consensus 16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~e 54 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYE 54 (73)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHH
Confidence 456677778889999999999999999999999887764
No 184
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.03 E-value=37 Score=25.25 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-ChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYRW-DVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~W-~~~~l~e~~~e 93 (516)
.|.++.+ +|.+...|+..|+..+| |++..++-+++
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4566666 59999999999999999 99999988874
No 185
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.97 E-value=46 Score=25.63 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLLSL-KEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.|.++.++ |. ....++..|+..+||+++.++.++.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4456777765 77 4677799999999999999999883
No 186
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=42.81 E-value=11 Score=33.24 Aligned_cols=31 Identities=16% Similarity=0.432 Sum_probs=21.9
Q ss_pred CcccCCC--CCccceecCCCCceee-cccccccc
Q 043224 281 HTKPCPK--CCKPIEKNGGCNMVRC-KCGITFNW 311 (516)
Q Consensus 281 ntK~CPk--C~~~IEKn~GCnhMtC-~C~~~FCw 311 (516)
.-+.||+ |+.-+.=-.-=+..+| +|++-+++
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 3489999 9986543222257899 89998875
No 187
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=42.65 E-value=8.8 Score=35.30 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=22.2
Q ss_pred cCcccCCCCCccc-eecCCCCceee-cccccccc
Q 043224 280 SHTKPCPKCCKPI-EKNGGCNMVRC-KCGITFNW 311 (516)
Q Consensus 280 ~ntK~CPkC~~~I-EKn~GCnhMtC-~C~~~FCw 311 (516)
..-+.||+|+..+ -....+.| +| +|++.|++
T Consensus 111 ~~~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 111 LQQKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp ECSEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred EccccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 3458999999653 44666655 99 89987754
No 188
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.91 E-value=48 Score=26.53 Aligned_cols=49 Identities=22% Similarity=0.636 Sum_probs=33.6
Q ss_pred CcccccccccccCC---CCeeec--CCCCcccHHHHHHHHHhhhhcCCccccccccccccccc
Q 043224 121 STFCCNICCDDVSP---QEVTTM--DCGHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVC 178 (516)
Q Consensus 121 ~~~~C~IC~e~~~~---~~~~~l--~CgH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i 178 (516)
....|.||.+++.. .++|.. .|+-..|+.|+.-- .++|. -.||. |+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----rkeG~---q~Cpq--CktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----RREGT---QNCPQ--CKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----HHTSC---SSCTT--TCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----HhccC---ccccc--cCCcc
Confidence 45789999999643 234433 78888999997543 34554 46887 77644
No 189
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=41.45 E-value=8.8 Score=28.39 Aligned_cols=34 Identities=26% Similarity=0.707 Sum_probs=23.3
Q ss_pred cCCCCCCCCceEeecCCCcceeecc-CCcccccccccccCCC
Q 043224 215 WCPSVPHCGNAIQVEADELCEVECA-CGFQFCFSCSSVAHSP 255 (516)
Q Consensus 215 ~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~p 255 (516)
.|- +|...+.. .....|+ |+..||..|-.=.|.-
T Consensus 17 ~C~---~C~~~~~~----~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCY---GCQGELKD----QHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EET---TTTEECTT----SEEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccc---ccCcccCC----CccEECCccCcCcccchhHHHHhh
Confidence 474 68776631 1136797 9999999997666643
No 190
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.40 E-value=48 Score=25.41 Aligned_cols=35 Identities=6% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-CChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYR-WDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~e~~~e 93 (516)
.|.++.+ +|.+...|+..|+..+ ||.+..++-+++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 12 VIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 4555666 5999999999999988 689999988885
No 191
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=40.76 E-value=17 Score=26.65 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=18.2
Q ss_pred cccCCCCCc-cceecCCCCceee-cccc
Q 043224 282 TKPCPKCCK-PIEKNGGCNMVRC-KCGI 307 (516)
Q Consensus 282 tK~CPkC~~-~IEKn~GCnhMtC-~C~~ 307 (516)
...||.|+. .|..+..=.-+.| .||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 458999976 6666554456888 6874
No 192
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=40.73 E-value=9.8 Score=32.33 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=21.7
Q ss_pred cccCCCCCcccee----cCCCCceee-cccccc
Q 043224 282 TKPCPKCCKPIEK----NGGCNMVRC-KCGITF 309 (516)
Q Consensus 282 tK~CPkC~~~IEK----n~GCnhMtC-~C~~~F 309 (516)
.+.||.|+..+.- ..+-+.+.| .|+|.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 4789999976652 267889999 799866
No 193
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.69 E-value=16 Score=28.64 Aligned_cols=41 Identities=20% Similarity=0.503 Sum_probs=26.5
Q ss_pred HHHHHhc-CcccCCCCCccceecCCCCceee-ccccccccccccc
Q 043224 274 SLNWISS-HTKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLE 316 (516)
Q Consensus 274 ~~~wi~~-ntK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~ 316 (516)
...|+.. ....|+.|+...-- .=-.-.| .||.-||..|...
T Consensus 10 ~~~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 10 GHAWLKDDEATHCRQCEKEFSI--SRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp -----CCCCCCBCTTTCCBCBT--TBCCEECTTTCCEECSGGGCE
T ss_pred CCccccCccCCcccCcCCcccC--ccccccCCCCCCEEChHHhCC
Confidence 3468854 36789999987642 2234578 6999999999875
No 194
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.99 E-value=71 Score=23.28 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLLSLK-EKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.|.++.++ |.+ ...++..|+..+||.++.++.++.
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4567777765 775 667799999999999999998883
No 195
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.60 E-value=19 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.683 Sum_probs=21.0
Q ss_pred CcccCCCCCCCCceEeecCC---Ccceeecc-CCccc
Q 043224 212 RVKWCPSVPHCGNAIQVEAD---ELCEVECA-CGFQF 244 (516)
Q Consensus 212 ~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-Cg~~f 244 (516)
.+.+|| .|++.+.+..+ ....+.|. |++.+
T Consensus 3 ~m~FCp---~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI---ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS---SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc---CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 367899 79999987653 23457775 77654
No 196
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=39.33 E-value=16 Score=31.60 Aligned_cols=31 Identities=23% Similarity=0.632 Sum_probs=20.4
Q ss_pred CCCcccCCCCCCCCceEeecCC---Ccceeecc-CCcc
Q 043224 210 NRRVKWCPSVPHCGNAIQVEAD---ELCEVECA-CGFQ 243 (516)
Q Consensus 210 ~~~~~~CP~~p~C~~~i~~~~~---~~~~v~C~-Cg~~ 243 (516)
...+++|| .|++.+.+..+ ....+.|+ |++.
T Consensus 21 ~~~~~FCP---eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 21 MTTFRFCR---DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp -CCCCBCT---TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred ccCCeeCC---CCCCEeeECccCCCceeEEECCCCCCc
Confidence 34688999 79999987653 22345664 6653
No 197
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=38.89 E-value=14 Score=33.46 Aligned_cols=23 Identities=26% Similarity=0.966 Sum_probs=19.9
Q ss_pred ccCCCCCccceecCCCCceee-cccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRC-KCGI 307 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC-~C~~ 307 (516)
-.||+|+.+..+.+ ++|.| .||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCC
T ss_pred ecccccCCceEECC--CEEECCCCCC
Confidence 47999999998876 99999 8984
No 198
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=38.83 E-value=37 Score=31.18 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHh
Q 043224 56 MGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 56 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.+.|+++.+ .|++.+.|+..|...+||.+...+.++
T Consensus 164 eekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 164 TKKIENLCA-MGFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 344555544 499999999999999999999999887
No 199
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=38.72 E-value=14 Score=31.65 Aligned_cols=31 Identities=26% Similarity=0.774 Sum_probs=22.7
Q ss_pred HhcCcccCCCCCccceecCCCCceee-cccccc
Q 043224 278 ISSHTKPCPKCCKPIEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 278 i~~ntK~CPkC~~~IEKn~GCnhMtC-~C~~~F 309 (516)
+....-+||+|....-=..| +...| -|+|+|
T Consensus 23 ~M~~lP~CP~C~seytYeDg-~l~vCPeC~hEW 54 (138)
T 2akl_A 23 MVSTLPPCPQCNSEYTYEDG-ALLVCPECAHEW 54 (138)
T ss_dssp CCCCSCCCTTTCCCCCEECS-SSEEETTTTEEE
T ss_pred ccccCCCCCCCCCcceEecC-CeEECCcccccc
Confidence 34556899999987665555 35888 688886
No 200
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.41 E-value=9.9 Score=36.80 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=10.3
Q ss_pred eec-cCCcccccccc
Q 043224 236 VEC-ACGFQFCFSCS 249 (516)
Q Consensus 236 v~C-~Cg~~fC~~C~ 249 (516)
|+. .|||.||..|-
T Consensus 195 Vts~~CGHsFcR~cI 209 (267)
T 3htk_C 195 LISRKCNHVFDRDGI 209 (267)
T ss_dssp EEESSSCCEEEHHHH
T ss_pred eeeCCCCCcccHHHH
Confidence 665 48888888774
No 201
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=37.37 E-value=23 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=23.0
Q ss_pred ccCCCCCCCCceEeecCCCcceeecc-CCccccc
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECA-CGFQFCF 246 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~ 246 (516)
..|| +|++.-.+-......|.|. ||...|.
T Consensus 8 VKCp---~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP---DCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT---TTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECC---CCCCceEEEecCceEEEcccCCCEEee
Confidence 3588 8999877665555679997 9998875
No 202
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.21 E-value=81 Score=27.41 Aligned_cols=49 Identities=18% Similarity=0.507 Sum_probs=34.2
Q ss_pred CcccccccccccCCCCeeec-CCCCcccHHHHHHHHHh----hh--hcCCcccccccccccccc
Q 043224 121 STFCCNICCDDVSPQEVTTM-DCGHCFCNNCWTEHFIV----KI--NDGQSRRIKCMALKCNVV 177 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~yl~~----~I--~~g~~~~i~CP~~~C~~~ 177 (516)
....|.||.+. .+++.. .|...||..|+..-+.. .| .+| .-.||. |...
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~~--C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCYI--CHPE 117 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCTT--TCCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEeec--ccCc
Confidence 35679999985 555554 89999999999977642 22 234 367887 6643
No 203
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=35.75 E-value=25 Score=29.59 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCcc-ceecCCCCc-eee-cccc------------
Q 043224 243 QFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKP-IEKNGGCNM-VRC-KCGI------------ 307 (516)
Q Consensus 243 ~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~-IEKn~GCnh-MtC-~C~~------------ 307 (516)
..|++|++.-|.-..|.. +.|-+|+.+ =-....|.. +.| +|+.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~----------------------~~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~~~ 62 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH----------------------IICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKW 62 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS----------------------CCCTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCCCC
T ss_pred CcccCCCCCCcCcccCcC----------------------CcCcCCCCcCCccCcccCCcccccccCCCCCccccCcCcc
Q ss_pred --ccccccccc
Q 043224 308 --TFNWISGLE 316 (516)
Q Consensus 308 --~FCw~C~~~ 316 (516)
..||.|+..
T Consensus 63 ~~~~C~~Cg~~ 73 (124)
T 2lli_A 63 KKVQCTLCKSK 73 (124)
T ss_dssp CCCSSSSSCSS
T ss_pred cCccCCCCCcC
No 204
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.63 E-value=59 Score=24.07 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh-CCChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHY-RWDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~-~W~~~~l~e~~~e 93 (516)
.|.++.+ +|.+...|+..|+.. +||.+..++-+++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 12 ALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3455655 699999999999999 7999999988884
No 205
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.31 E-value=20 Score=26.11 Aligned_cols=26 Identities=31% Similarity=0.986 Sum_probs=19.0
Q ss_pred cccCCCCCccceecCCCCceeec---ccccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRCK---CGITF 309 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC~---C~~~F 309 (516)
.-.||.|+.+.+-.. ..+.|. ||..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 458999999988766 567775 66544
No 206
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.21 E-value=15 Score=28.87 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.3
Q ss_pred cCCCCCccceecCCCCceee-ccc--cccccccccc
Q 043224 284 PCPKCCKPIEKNGGCNMVRC-KCG--ITFNWISGLE 316 (516)
Q Consensus 284 ~CPkC~~~IEKn~GCnhMtC-~C~--~~FCw~C~~~ 316 (516)
.||.|+.++|+ | .|| ..||-.|++-
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCE
Confidence 89999999998 6 465 5688888875
No 207
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=34.48 E-value=54 Score=31.34 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHh
Q 043224 56 MGDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 56 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.+.|.++.+ .|++.+.|+..|..++||.+..++.++
T Consensus 216 ~~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~ 251 (253)
T 3e46_A 216 TKKIENLCA-AGFDRNAVIVALSSKSWDVETATELLL 251 (253)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 344555544 399999999999999999999999887
No 208
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.28 E-value=27 Score=26.08 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=23.0
Q ss_pred ccCCCCCCCCceEeecCCCcceeecc-CCccccc
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECA-CGFQFCF 246 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~ 246 (516)
..|| +|++.-.+-......|.|. ||+..|.
T Consensus 16 VkCp---~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI---DCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECS---SSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred EECC---CCCCeeEEEecCCeEEEccCcCCEEec
Confidence 4688 8999877655555679997 9998875
No 209
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=33.69 E-value=1e+02 Score=21.18 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHhCCChHHHHHHHh
Q 043224 56 MGDLLRVMDLLSLK-EKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 56 ~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.+.|..+.++ |.+ ...+...|+..+||.++.++.++
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4567777765 775 56679999999999999998877
No 210
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=33.65 E-value=25 Score=28.50 Aligned_cols=48 Identities=23% Similarity=0.519 Sum_probs=34.0
Q ss_pred CCCcccccccccccCCCCeeecCC-CCcccHHHHHHHHHhhhhcCCcccccccccccccccCH
Q 043224 119 CSSTFCCNICCDDVSPQEVTTMDC-GHCFCNNCWTEHFIVKINDGQSRRIKCMALKCNVVCDE 180 (516)
Q Consensus 119 ~~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~yl~~~I~~g~~~~i~CP~~~C~~~i~~ 180 (516)
.-+...|..|+-... . .+.| .|+.|..|+...++. .=+||. |+..++-
T Consensus 25 ~~G~~nCKsCWf~~k--~--LV~C~dHYLCl~CLtlmL~~--------SdrCpI--C~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--G--LVECNNHYLCLNCLTLLLSV--------SNRCPI--CKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCS--S--EEECSSCEEEHHHHHHTCSS--------SSEETT--TTEECCC
T ss_pred ccCcccChhhccccC--C--eeeecchhhHHHHHHHHHhh--------ccCCcc--cCCcCCc
Confidence 346778999997632 2 2344 699999999887653 247988 9887764
No 211
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=33.12 E-value=21 Score=33.90 Aligned_cols=35 Identities=26% Similarity=0.769 Sum_probs=0.0
Q ss_pred HHHHHhcCcccCCCCCc-ccee---cCCCCceee-cccccc
Q 043224 274 SLNWISSHTKPCPKCCK-PIEK---NGGCNMVRC-KCGITF 309 (516)
Q Consensus 274 ~~~wi~~ntK~CPkC~~-~IEK---n~GCnhMtC-~C~~~F 309 (516)
|..|+..| --||+|+. ++.+ |.-=-...| .|+-+|
T Consensus 27 TE~Wv~~n-~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 27 TEDWVYRQ-SYCPNCGNNPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp HHHHHHHH-CCCTTTCCSSCEEC----CCCEEECTTTCCEE
T ss_pred hHHHHHHC-CcCCCCCChhhhhccCCCcccccccCCcchhh
No 212
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.11 E-value=15 Score=28.17 Aligned_cols=25 Identities=28% Similarity=0.756 Sum_probs=16.9
Q ss_pred cccCCCCCccceecCCCCceee-cccc
Q 043224 282 TKPCPKCCKPIEKNGGCNMVRC-KCGI 307 (516)
Q Consensus 282 tK~CPkC~~~IEKn~GCnhMtC-~C~~ 307 (516)
.-.|+.|+..++...+ .-+.| .||+
T Consensus 28 ~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEECCCCCCcceeCCC-CCccCCCCCc
Confidence 3478888888776543 45677 5775
No 213
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=32.58 E-value=59 Score=32.39 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.+.+.+.+-....|...|+-+.|+.++.++.||+
T Consensus 48 ~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~ 83 (362)
T 4gew_A 48 KLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYG 83 (362)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcC
Confidence 566789999999999999999999999999999995
No 214
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.81 E-value=82 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-CChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYR-WDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~-W~~~~l~e~~~e 93 (516)
.|.++.+ +|.+...|+..|++.+ ||.+..++-+++
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3455665 5999999998888874 999999988884
No 215
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=31.62 E-value=30 Score=27.12 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=23.8
Q ss_pred ccCCCCCCCCceEeecCCCcceeecc-CCcccccc
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECA-CGFQFCFS 247 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~ 247 (516)
+-|| +|+++-.+-......|.|. ||+..|--
T Consensus 33 VkCp---~C~n~q~VFShA~t~V~C~~Cg~~L~~P 64 (81)
T 2xzm_6 33 VKCA---QCQNIQMIFSNAQSTIICEKCSAILCKP 64 (81)
T ss_dssp EECS---SSCCEEEEETTCSSCEECSSSCCEEEEE
T ss_pred eECC---CCCCeeEEEecCccEEEccCCCCEEeec
Confidence 3688 8999877666556679997 99988753
No 216
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=31.15 E-value=28 Score=27.65 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=27.5
Q ss_pred ccCCCCCCCCceEeecCCCcceeecc-CCcccccccccccCC
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECA-CGFQFCFSCSSVAHS 254 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~C~~~~H~ 254 (516)
+-|| +|+++-.+-......|.|. ||+..|--=|..+..
T Consensus 37 VkCp---~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l 75 (86)
T 3iz6_X 37 VKCQ---GCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARL 75 (86)
T ss_dssp EECT---TTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCC
T ss_pred EECC---CCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEe
Confidence 5798 8999877666556679997 999988655544433
No 217
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=30.71 E-value=71 Score=23.36 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=31.7
Q ss_pred cccCHHHHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHH
Q 043224 44 MVIPKESLLAAQMG-----DLLRVMDLLSLKEKHARTLLIH 79 (516)
Q Consensus 44 ~vlt~~~i~~~~~~-----~i~~v~~~l~i~~~~a~~LL~~ 79 (516)
..+|.++|...++. +|+.++..+||+.+....+|+.
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHH
Confidence 45899999999998 6999999999999998888863
No 218
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=30.17 E-value=97 Score=23.12 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 57 GDLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
+.|..+.+.+|++..+|..-|...+||.++.++.+.+
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4567788999999999999999999999999987763
No 219
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=30.11 E-value=24 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.608 Sum_probs=21.4
Q ss_pred CcccCCCCCCCCceEeecC---CCcceeecc-CCccc
Q 043224 212 RVKWCPSVPHCGNAIQVEA---DELCEVECA-CGFQF 244 (516)
Q Consensus 212 ~~~~CP~~p~C~~~i~~~~---~~~~~v~C~-Cg~~f 244 (516)
.+.+|| .|++++.+.. .....+.|. ||+..
T Consensus 3 ~~~FCp---~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR---DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS---SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc---ccCccCcccccCcCCCCEEECCcCCCee
Confidence 467899 7999998664 233467886 88754
No 220
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.80 E-value=1.1e+02 Score=23.01 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=32.6
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLL-SLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.+..+.++| +|........|...++|++..++.+.+
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 44566688888 899999999999999999999998873
No 221
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=28.70 E-value=1.1e+02 Score=21.48 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=33.6
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 56 MGDLLRVMDLL-SLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 56 ~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.+.+..++++| +++...++..|...+.|+++.++.+.+
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46788889998 899999999999999999999888764
No 222
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.78 E-value=33 Score=29.10 Aligned_cols=39 Identities=21% Similarity=0.500 Sum_probs=27.6
Q ss_pred HHHhc-CcccCCCCCccceecCCCCceee-ccccccccccccc
Q 043224 276 NWISS-HTKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLE 316 (516)
Q Consensus 276 ~wi~~-ntK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~ 316 (516)
.|+.. ....|+.|+.+.-- .=-.-.| .||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCCCCCeEEChHHhCC
Confidence 46543 35789999987542 2234678 6999999999874
No 223
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=27.59 E-value=23 Score=28.13 Aligned_cols=28 Identities=21% Similarity=0.654 Sum_probs=17.7
Q ss_pred cccCCCCCcc------ceecCCCCceee-cccccc
Q 043224 282 TKPCPKCCKP------IEKNGGCNMVRC-KCGITF 309 (516)
Q Consensus 282 tK~CPkC~~~------IEKn~GCnhMtC-~C~~~F 309 (516)
+=.||.|+.. |.|..|=-+++| .||..|
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 4579988754 224555567777 577555
No 224
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.52 E-value=26 Score=29.75 Aligned_cols=34 Identities=24% Similarity=0.568 Sum_probs=24.0
Q ss_pred CcccccccccccCCCC--eeecCCCCcccHHHHHHH
Q 043224 121 STFCCNICCDDVSPQE--VTTMDCGHCFCNNCWTEH 154 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 154 (516)
....|.+|...|.... -.--.||+.||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4567999999875321 112389999999997654
No 225
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=26.77 E-value=87 Score=25.59 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCChHHHH
Q 043224 57 GDLLRVMDLLSLKEKHARTLLIHYRWDVEKVF 88 (516)
Q Consensus 57 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~ 88 (516)
++|.-|++..|+|...|..-|+..++|.-..+
T Consensus 67 edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai 98 (102)
T 1tr8_A 67 DDIELVMNQTGASREDATRALQETGGDLAEAI 98 (102)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHH
Confidence 56788999999999999999999999965443
No 226
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.76 E-value=22 Score=30.74 Aligned_cols=31 Identities=19% Similarity=0.545 Sum_probs=21.9
Q ss_pred CcccccccccccCC-CCe--eecCCCCcccHHHH
Q 043224 121 STFCCNICCDDVSP-QEV--TTMDCGHCFCNNCW 151 (516)
Q Consensus 121 ~~~~C~IC~e~~~~-~~~--~~l~CgH~fC~~C~ 151 (516)
....|.+|..++.. ... .-..|.|.+|..|=
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 34679999999842 222 22389999999983
No 227
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=26.42 E-value=23 Score=34.31 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=17.3
Q ss_pred cccCCCCCccceec--CCCCceee-ccc
Q 043224 282 TKPCPKCCKPIEKN--GGCNMVRC-KCG 306 (516)
Q Consensus 282 tK~CPkC~~~IEKn--~GCnhMtC-~C~ 306 (516)
.++||.|+.+|++. +|=.--.| .|+
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 38999999999973 55444444 443
No 228
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.31 E-value=32 Score=26.88 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=25.1
Q ss_pred CCCcccccccccccCCCC--eeecCCCCcccHHHHHHH
Q 043224 119 CSSTFCCNICCDDVSPQE--VTTMDCGHCFCNNCWTEH 154 (516)
Q Consensus 119 ~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~y 154 (516)
......|.+|...|.... -.--.||+.||..|-...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345568999999885432 112379999999997653
No 229
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.05 E-value=27 Score=33.70 Aligned_cols=25 Identities=36% Similarity=0.988 Sum_probs=17.2
Q ss_pred cccCCCCCccceec--CCCCceee-ccc
Q 043224 282 TKPCPKCCKPIEKN--GGCNMVRC-KCG 306 (516)
Q Consensus 282 tK~CPkC~~~IEKn--~GCnhMtC-~C~ 306 (516)
.++||.|+.+|++. +|=+--.| .|+
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 48999999999973 55444444 444
No 230
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=25.87 E-value=74 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=38.5
Q ss_pred CccccCHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHh
Q 043224 42 SSMVIPKESLLAAQMGD-LLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 42 ~~~vlt~~~i~~~~~~~-i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.-.-+++++|.+.+-.+ |++++.-+|+++..|...|..+ .-.+++++.
T Consensus 60 ~N~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~---LP~~VD~lT 108 (135)
T 1z67_A 60 RNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQ---LPKIIDALS 108 (135)
T ss_dssp CCCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHH---HHHHHHHTC
T ss_pred CCCCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHH---HHHHHhccC
Confidence 44668999999999766 9999999999999999988755 445555544
No 231
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.69 E-value=1e+02 Score=21.01 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLV 92 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 92 (516)
.|..+.+ +|.+...|+..|+..+ |.+..++.++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 3555655 5899999999999997 9998887776
No 232
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=25.44 E-value=30 Score=22.48 Aligned_cols=17 Identities=24% Similarity=0.768 Sum_probs=13.3
Q ss_pred cccccccccCCCCCchh
Q 043224 244 FCFSCSSVAHSPCSCLM 260 (516)
Q Consensus 244 fC~~C~~~~H~p~~C~~ 260 (516)
.|++|++..|....|..
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 58888888888777753
No 233
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=25.12 E-value=25 Score=34.10 Aligned_cols=22 Identities=41% Similarity=0.895 Sum_probs=15.7
Q ss_pred cccCCCCCcccee--cCCCCceee
Q 043224 282 TKPCPKCCKPIEK--NGGCNMVRC 303 (516)
Q Consensus 282 tK~CPkC~~~IEK--n~GCnhMtC 303 (516)
.++||.|+.+|+| -+|=+--.|
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~C 268 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYC 268 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEEC
T ss_pred cCCCCCCCCeEEEEEECCCCeEEC
Confidence 3799999999997 355333444
No 234
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=24.92 E-value=99 Score=25.91 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCChHHHHHHHhh
Q 043224 58 DLLRVMDLLSLKEKHARTLLIHYRWDVEKVFAVLVE 93 (516)
Q Consensus 58 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~e 93 (516)
.|.++.+ +|.+...|+..|+..+||.++..+.++.
T Consensus 81 ~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 81 IVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3556666 5999999999999999999999988873
No 235
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=24.79 E-value=33 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=25.0
Q ss_pred CCcccccccccccCCCC--eeecCCCCcccHHHHHHHH
Q 043224 120 SSTFCCNICCDDVSPQE--VTTMDCGHCFCNNCWTEHF 155 (516)
Q Consensus 120 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~yl 155 (516)
.....|.+|...|.... -.--.||+.||..|....+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 34567999998875421 1223899999999976543
No 236
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.65 E-value=26 Score=33.88 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=15.6
Q ss_pred cccCCCCCccceec--CCCCceee
Q 043224 282 TKPCPKCCKPIEKN--GGCNMVRC 303 (516)
Q Consensus 282 tK~CPkC~~~IEKn--~GCnhMtC 303 (516)
.++||.|+.+|++. +|=+--.|
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~C 263 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYC 263 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEEC
T ss_pred CCCCCCCCCEeeEEEECCCceEEC
Confidence 48999999999973 55333444
No 237
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.57 E-value=37 Score=26.69 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=23.1
Q ss_pred ccCCCCCCCCceEeecCCCcceeecc-CCcccccc
Q 043224 214 KWCPSVPHCGNAIQVEADELCEVECA-CGFQFCFS 247 (516)
Q Consensus 214 ~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~ 247 (516)
+-|| +|++.-.+-......|.|. ||+..|-=
T Consensus 35 VkCp---~C~~~q~VFSha~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 35 VKCP---GCLNITTVFSHAQTAVTCESCSTILCTP 66 (82)
T ss_dssp EECT---TSCSCEEEESBCSSCCCCSSSCCCCEEC
T ss_pred EECC---CCCCeeEEEecCCeEEEccccCCEEecc
Confidence 4688 8999877655455669997 99988753
No 238
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.56 E-value=32 Score=30.60 Aligned_cols=34 Identities=32% Similarity=0.771 Sum_probs=26.0
Q ss_pred CcccccccccccCCCCeeec---CCCCcccHHHHHHHHHh
Q 043224 121 STFCCNICCDDVSPQEVTTM---DCGHCFCNNCWTEHFIV 157 (516)
Q Consensus 121 ~~~~C~IC~e~~~~~~~~~l---~CgH~fC~~C~~~yl~~ 157 (516)
....|.||.+. .+++.. +|...||..|+...+..
T Consensus 78 ~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 35679999875 455554 49999999999987755
No 239
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=24.47 E-value=35 Score=26.83 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=29.3
Q ss_pred cccccccccccCCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceecCCCCceeec--cccccccccccccc
Q 043224 242 FQFCFSCSSVAHSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRCK--CGITFNWISGLEYS 318 (516)
Q Consensus 242 ~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn~GCnhMtC~--C~~~FCw~C~~~w~ 318 (516)
..+|+.|+..-|....|... .+|.+|+..=.... .|. =...+||.|++.=.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~gh~~~-----~c~~p~~~~~CYnCG~~GH 57 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI---------------------WRAYILVDDNEKAK-----PKVLPFHTIYCYNCGGKGH 57 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG---------------------TCCCCBC------------------CCCBCSSSSCBSS
T ss_pred cCCCCCCCCCCCccccCCCc---------------------ccccccccCCcccc-----cccCCCCCCeecccCCCCc
Confidence 45799999999998888752 14666764311110 121 14578999998743
No 240
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=24.45 E-value=26 Score=33.70 Aligned_cols=24 Identities=33% Similarity=0.808 Sum_probs=16.5
Q ss_pred cccCCCCCccceec--CCCCceee-cc
Q 043224 282 TKPCPKCCKPIEKN--GGCNMVRC-KC 305 (516)
Q Consensus 282 tK~CPkC~~~IEKn--~GCnhMtC-~C 305 (516)
.++||.|+.+|++. +|=.--.| .|
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~C 260 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGC 260 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCC
Confidence 36999999999973 55444444 44
No 241
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.03 E-value=33 Score=27.99 Aligned_cols=17 Identities=24% Similarity=0.651 Sum_probs=14.4
Q ss_pred cccHHHHHHHHHhhhhc
Q 043224 145 CFCNNCWTEHFIVKIND 161 (516)
Q Consensus 145 ~fC~~C~~~yl~~~I~~ 161 (516)
-||++|+..|+..+-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999887654
No 242
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=23.92 E-value=32 Score=32.51 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=16.0
Q ss_pred cccCCCCCc----cceecCCCCceee-ccccc
Q 043224 282 TKPCPKCCK----PIEKNGGCNMVRC-KCGIT 308 (516)
Q Consensus 282 tK~CPkC~~----~IEKn~GCnhMtC-~C~~~ 308 (516)
--+||.|+. .+- +.| ++.| +||+.
T Consensus 14 ~~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLF-SDG--HTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEE-TTS--CEEETTTCCE
T ss_pred CCcCCCCCCCCCceEe-CCC--CeecccCCCc
Confidence 368999987 344 345 5777 67763
No 243
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=23.83 E-value=33 Score=27.90 Aligned_cols=17 Identities=24% Similarity=0.702 Sum_probs=14.3
Q ss_pred cccHHHHHHHHHhhhhc
Q 043224 145 CFCNNCWTEHFIVKIND 161 (516)
Q Consensus 145 ~fC~~C~~~yl~~~I~~ 161 (516)
-||++|+..|+..+-.+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999887653
No 244
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.44 E-value=1.8e+02 Score=20.15 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 043224 430 EDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSV 471 (516)
Q Consensus 430 e~~Q~~le~~~E~Ls~~le~~~~~~~~~~~~~~r~~~~~~t~ 471 (516)
|.--..||.++|.|.-.+.+-+..+... =.++|++|..+..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ss-q~KlKqRit~lE~ 44 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNAT-QMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 4445567777777777777665544332 2456777776643
No 245
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=22.81 E-value=54 Score=21.51 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=12.1
Q ss_pred cccccccccCCCCCchh
Q 043224 244 FCFSCSSVAHSPCSCLM 260 (516)
Q Consensus 244 fC~~C~~~~H~p~~C~~ 260 (516)
.||+|++.-|....|..
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 47788877777776653
No 246
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.43 E-value=41 Score=31.24 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=24.0
Q ss_pred ccCCCCCccceecCCCCceee-ccccccccccccc
Q 043224 283 KPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGLE 316 (516)
Q Consensus 283 K~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~~ 316 (516)
..|+.|+...- -.--.-.| .||.-||..|...
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccC--CcccccccCCcCCEEChHHhCC
Confidence 68999988653 22234678 6999999999875
No 247
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=22.38 E-value=56 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.533 Sum_probs=21.9
Q ss_pred cccCCCCCCCCceEeecCCCcceeecc-CCcccccc
Q 043224 213 VKWCPSVPHCGNAIQVEADELCEVECA-CGFQFCFS 247 (516)
Q Consensus 213 ~~~CP~~p~C~~~i~~~~~~~~~v~C~-Cg~~fC~~ 247 (516)
.+.|| .+.|+..+...... ....|. ||..++++
T Consensus 118 ~~~c~-~~~cg~g~fma~h~-~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECS-NPTCGAGVFLANHK-DRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCC-STTSCSSSBEEECS-SCEEESSSSSCCEEC
T ss_pred cCcCC-CccCCCceEecccC-CCcccCCCceEEEec
Confidence 46799 48898744422211 258897 99998874
No 248
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.37 E-value=78 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.414 Sum_probs=27.6
Q ss_pred CcccCCCCCccceecCCCCceee-ccccccccccc
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISG 314 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~ 314 (516)
+...|..|..+.---.|. ...| .|++.+|-.|+
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCC-CCcCCCCCchhhcccc
Confidence 568999999998776666 4677 79999999999
No 249
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.32 E-value=25 Score=25.13 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=9.5
Q ss_pred cCcccCCCCCcc
Q 043224 280 SHTKPCPKCCKP 291 (516)
Q Consensus 280 ~ntK~CPkC~~~ 291 (516)
.+.+.||+|+..
T Consensus 12 ~~k~iCpkC~a~ 23 (51)
T 3j21_g 12 FKKYVCLRCGAT 23 (51)
T ss_dssp SSEEECTTTCCE
T ss_pred hCCccCCCCCCc
Confidence 456789999887
No 250
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=22.01 E-value=71 Score=28.30 Aligned_cols=34 Identities=26% Similarity=0.683 Sum_probs=23.0
Q ss_pred CCCCCchhHHHHhHHhHHHHHHHHHHhcCcccCCCCCccceecCCCCceee--cccc
Q 043224 253 HSPCSCLMWELWSKKFEVESLSLNWISSHTKPCPKCCKPIEKNGGCNMVRC--KCGI 307 (516)
Q Consensus 253 H~p~~C~~~~~w~~k~~~e~~~~~wi~~ntK~CPkC~~~IEKn~GCnhMtC--~C~~ 307 (516)
=+|..|+...+- +..|.||+|..+++ ++.| .|||
T Consensus 96 lRPAicdkAR~K---------------Qq~k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 96 LRPAICDKARQK---------------QQRKSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp ECCCSSHHHHHH---------------HHHSBCSSSCCBEE------EECCCTBTTB
T ss_pred echHHHHHHHHH---------------hhcCCCCCCCccee------eEeccCcCCC
Confidence 368999875431 11389999998887 4667 3654
No 251
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.86 E-value=36 Score=29.30 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=27.1
Q ss_pred CcccCCCCCccceecCCCCceee-cccccccccccc
Q 043224 281 HTKPCPKCCKPIEKNGGCNMVRC-KCGITFNWISGL 315 (516)
Q Consensus 281 ntK~CPkC~~~IEKn~GCnhMtC-~C~~~FCw~C~~ 315 (516)
+...|..|..+.---++.. -.| .|++.+|-.|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcccccccCC
Confidence 5678999999886555555 667 799999999998
No 252
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.41 E-value=2.9e+02 Score=21.13 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q 043224 429 FEDQQQQFETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADY 475 (516)
Q Consensus 429 Fe~~Q~~le~~~E~Ls~~le~~~~~~~~~~~~~~r~~~~~~t~~~~~ 475 (516)
+|..-..||.+++.|.-.+.+.+..+... =.++||+|..|-..+..
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss-Q~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM-QQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 45556678888888888877766554432 34678888877665544
No 253
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=20.18 E-value=1.3e+02 Score=25.62 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=31.1
Q ss_pred ccccccccc---ccCHHHHHHhhCCCChHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCceEee
Q 043224 168 KCMALKCNV---VCDEAKIRCLVSARDSNIADKFERFLLESYIDDNRRVKWCPSVPHCGNAIQV 228 (516)
Q Consensus 168 ~CP~~~C~~---~i~~~~i~~ll~~~~~e~~~~y~~~~~~~~v~~~~~~~~CP~~p~C~~~i~~ 228 (516)
.||. |+. .|...+|+.+|.. +. + . +.. ..+..|++ |+|.-+...
T Consensus 3 ~CP~--Cg~~G~~V~~~Tvk~ll~~---~~--------~-~-~~~-~~y~~C~~-~~C~VvYf~ 49 (130)
T 2hu9_A 3 RCPE--CSTEGWRVLPLTVGAHVKE---GL--------W-S-KIK-GDFYFCSL-ESCEVVYFN 49 (130)
T ss_dssp BCTT--TCCBCEEECHHHHHHHBCG---GG--------G-G-GCC-SCEEECCC-TTCSEEEEC
T ss_pred cCCC--CCCcCcCccHHHHHHHhhH---HH--------h-c-cCC-CCEEeECC-CCCCEEEEC
Confidence 5887 875 7888999999872 21 1 1 333 47889995 999977663
No 254
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.03 E-value=47 Score=21.77 Aligned_cols=25 Identities=40% Similarity=1.023 Sum_probs=17.9
Q ss_pred cCCCCCcc---ceecCCCCceee-ccccc
Q 043224 284 PCPKCCKP---IEKNGGCNMVRC-KCGIT 308 (516)
Q Consensus 284 ~CPkC~~~---IEKn~GCnhMtC-~C~~~ 308 (516)
.||.|+.| +.+..+=-.+.| .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 59999876 445566677888 58864
Done!