BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043225
         (473 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54RP0|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase
           OS=Dictyostelium discoideum GN=agtA PE=1 SV=1
          Length = 648

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 128/304 (42%), Gaps = 53/304 (17%)

Query: 182 LESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRV--TNFVVCALDYETYQF--- 236
           +E  +  I + +K V++    Y +R+M ++ +    +L +  + +++  +D + YQF   
Sbjct: 1   MEKKVEYIKENDKIVLMC--NYGFRDMTLNLLKCFEKLSIDKSRYILYCMDDKAYQFFAE 58

Query: 237 ----------------SILQGLPVFNDPSAPSN---ISFNDCHFGTKCFQRVTKAKSRMV 277
                           S      +F+D +   N    S N   +G   F+ +   K  +V
Sbjct: 59  FKGIECQRFSRDDIINSSTSSTQLFHDNNTNDNKGIYSENAESYGDIGFRAICNEKPLVV 118

Query: 278 LQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINL-----PRRLN 332
           L +LK GYNVL +D D+ W ++P    Y         Q +++     I+L        + 
Sbjct: 119 LDVLKKGYNVLWTDTDIVWKRDPFIHFYQD-----INQENQFTNDDDIDLYVQQDDDDIC 173

Query: 333 SGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETN-- 390
           +GFYF RS+  TI  ++  + +     + +Q +       + G N K  +  +    N  
Sbjct: 174 AGFYFIRSNQRTIKFIQDSI-NFLNPCIDDQIAMR-LFLKSQGINIKSKNILLSLSENDK 231

Query: 391 ---LTVHFLDRNLFPNGA---YLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVL 444
              +    LD+ LFPNG     L + Q+ N+          ++HNN I G   K +R + 
Sbjct: 232 KDKIRYRLLDKKLFPNGTNYFNLKITQRDNITP-------FIIHNNCIIGHRSKKDRFIE 284

Query: 445 SGLW 448
            GLW
Sbjct: 285 YGLW 288


>sp|Q3E6Y3|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana
           GN=At1g28695 PE=2 SV=1
          Length = 329

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 261 FGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYK 320
           F +K F  +   ++R++L +L+ GYNV+ +D DV W ++PL  L       +    D   
Sbjct: 137 FMSKDFIEMMWRRTRLILDVLRRGYNVIFTDTDVMWLRSPLSRLNM--SLDMQISVDRIN 194

Query: 321 ATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCGAGGSNRKG 380
             G +     +N+GFY  RS++ TI+  +K  +    S   ++      L  +G  N+ G
Sbjct: 195 VGGQL-----INTGFYHVRSNNKTISLFQKWYDMRLNSTGMKEQDVLKNLLDSGFFNQLG 249


>sp|P53864|YNW6_YEAST Putative uncharacterized protein YNL226W OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YNL226W PE=5
           SV=1
          Length = 136

 Score = 34.7 bits (78), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 186 LSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVF 245
           L   + ++ +V+  V GY Y + + SW+ RL   + + F + +  +  Y FSIL+     
Sbjct: 56  LKAHSSRSSSVIFEVVGYHYTD-INSWLVRLLLCKKSYFAMTSNFFHVYFFSILKTRKSV 114

Query: 246 ND---PSAPSNISFND 258
           N    P  PSN + N+
Sbjct: 115 NIKCWPLKPSNFTTNE 130


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,186,818
Number of Sequences: 539616
Number of extensions: 7361571
Number of successful extensions: 13012
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13005
Number of HSP's gapped (non-prelim): 3
length of query: 473
length of database: 191,569,459
effective HSP length: 121
effective length of query: 352
effective length of database: 126,275,923
effective search space: 44449124896
effective search space used: 44449124896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)