Query 043225
Match_columns 473
No_of_seqs 160 out of 417
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03407 Nucleotid_trans: Nucl 100.0 7.6E-39 1.6E-43 306.1 18.7 210 220-442 2-212 (212)
2 PLN00176 galactinol synthase 98.2 6E-05 1.3E-09 77.8 16.5 171 193-371 21-224 (333)
3 cd02537 GT8_Glycogenin Glycoge 98.1 0.0001 2.2E-09 72.5 15.3 155 200-372 7-169 (240)
4 cd00505 Glyco_transf_8 Members 97.8 0.0016 3.5E-08 64.0 17.6 171 196-372 3-199 (246)
5 cd04194 GT8_A4GalT_like A4GalT 97.7 0.00045 9.8E-09 67.6 12.3 169 197-371 3-197 (248)
6 PF05637 Glyco_transf_34: gala 97.5 0.00011 2.3E-09 72.7 5.2 200 193-432 3-232 (239)
7 PF01501 Glyco_transf_8: Glyco 97.2 0.0011 2.3E-08 63.6 7.6 171 197-371 2-203 (250)
8 cd06914 GT8_GNT1 GNT1 is a fun 97.2 0.01 2.2E-07 60.0 14.8 152 200-372 7-172 (278)
9 cd06430 GT8_like_2 GT8_like_2 96.9 0.07 1.5E-06 54.7 17.8 146 278-444 91-267 (304)
10 PLN03182 xyloglucan 6-xylosylt 96.2 0.066 1.4E-06 56.5 12.7 148 269-432 180-359 (429)
11 PLN03181 glycosyltransferase; 96.0 0.1 2.2E-06 55.3 13.1 122 235-372 159-307 (453)
12 COG1442 RfaJ Lipopolysaccharid 95.4 0.09 2E-06 54.4 9.8 174 196-372 4-201 (325)
13 PRK15171 lipopolysaccharide 1, 95.4 0.36 7.7E-06 50.1 14.2 171 194-371 25-226 (334)
14 cd06431 GT8_LARGE_C LARGE cata 94.4 0.68 1.5E-05 46.9 12.9 171 196-372 4-207 (280)
15 cd06432 GT8_HUGT1_C_like The C 94.4 1 2.2E-05 44.8 13.7 94 277-371 88-206 (248)
16 PF03314 DUF273: Protein of un 90.5 0.6 1.3E-05 45.4 6.0 97 267-372 25-127 (222)
17 cd06429 GT8_like_1 GT8_like_1 89.3 0.98 2.1E-05 45.2 6.7 90 268-371 99-199 (257)
18 KOG4748 Subunit of Golgi manno 86.9 3.2 6.9E-05 43.6 8.8 167 234-432 132-333 (364)
19 PF11051 Mannosyl_trans3: Mann 82.1 5 0.00011 40.3 7.7 96 197-305 4-112 (271)
20 PLN02523 galacturonosyltransfe 81.6 44 0.00094 37.2 15.0 106 261-368 354-482 (559)
21 PLN02829 Probable galacturonos 80.8 4.6 9.9E-05 45.2 7.3 107 261-370 434-564 (639)
22 PLN02659 Probable galacturonos 78.2 16 0.00034 40.4 10.3 105 261-368 321-456 (534)
23 PLN02910 polygalacturonate 4-a 77.9 12 0.00026 42.0 9.3 107 260-368 451-580 (657)
24 PLN02718 Probable galacturonos 76.0 9.1 0.0002 42.8 7.8 98 268-367 403-525 (603)
25 PLN02870 Probable galacturonos 69.8 10 0.00022 41.8 6.3 105 261-367 320-454 (533)
26 PLN02742 Probable galacturonos 67.0 1.1E+02 0.0023 34.1 13.4 101 268-370 338-460 (534)
27 cd02515 Glyco_transf_6 Glycosy 64.4 31 0.00067 35.0 8.1 106 183-301 22-141 (271)
28 PF13704 Glyco_tranf_2_4: Glyc 62.9 76 0.0017 25.9 9.1 81 207-301 5-89 (97)
29 PLN02769 Probable galacturonos 62.7 1.6E+02 0.0035 33.4 14.0 36 269-305 438-473 (629)
30 PLN02867 Probable galacturonos 61.8 54 0.0012 36.4 9.9 108 260-369 321-458 (535)
31 PF07801 DUF1647: Protein of u 47.8 23 0.00049 32.6 3.7 78 158-235 25-103 (142)
32 cd02071 MM_CoA_mut_B12_BD meth 43.1 1.9E+02 0.0041 25.2 8.8 66 182-247 39-108 (122)
33 cd05017 SIS_PGI_PMI_1 The memb 43.0 1E+02 0.0022 26.5 7.0 57 192-249 42-98 (119)
34 PF03414 Glyco_transf_6: Glyco 38.9 74 0.0016 33.3 6.2 105 183-301 87-205 (337)
35 PF07905 PucR: Purine cataboli 28.8 1.6E+02 0.0035 25.7 6.0 58 192-249 41-107 (123)
36 COG2185 Sbm Methylmalonyl-CoA 28.5 2.8E+02 0.0061 25.6 7.5 66 183-248 53-122 (143)
37 PF12804 NTP_transf_3: MobA-li 28.3 2.5E+02 0.0054 24.8 7.3 75 208-298 26-100 (160)
38 TIGR00290 MJ0570_dom MJ0570-re 27.4 4.5E+02 0.0096 25.9 9.3 82 193-294 58-144 (223)
39 cd08555 PI-PLCc_GDPD_SF Cataly 27.3 1.6E+02 0.0036 27.2 6.1 41 229-291 137-178 (179)
40 cd06296 PBP1_CatR_like Ligand- 26.5 5.5E+02 0.012 24.2 11.6 70 178-248 13-85 (270)
41 PF04900 Fcf1: Fcf1; InterPro 24.8 1.2E+02 0.0025 25.6 4.2 24 224-247 67-91 (101)
42 TIGR00064 ftsY signal recognit 23.3 4.4E+02 0.0095 26.4 8.7 69 208-293 88-163 (272)
43 TIGR00289 conserved hypothetic 23.0 5E+02 0.011 25.5 8.8 81 193-294 58-143 (222)
44 cd06299 PBP1_LacI_like_13 Liga 22.9 6.4E+02 0.014 23.7 11.4 103 181-289 16-121 (265)
45 TIGR00640 acid_CoA_mut_C methy 22.5 5.6E+02 0.012 22.9 10.6 67 182-248 42-112 (132)
46 PF02484 Rhabdo_NV: Rhabdoviru 22.1 1.2E+02 0.0027 25.8 3.6 31 269-299 10-40 (111)
47 cd06314 PBP1_tmGBP Periplasmic 21.6 7E+02 0.015 23.7 10.8 78 209-289 44-125 (271)
48 PF13477 Glyco_trans_4_2: Glyc 20.6 5.3E+02 0.011 21.8 8.2 49 198-248 3-51 (139)
49 COG1412 Uncharacterized protei 20.3 1.8E+02 0.0039 26.6 4.6 26 223-248 99-124 (136)
No 1
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=100.00 E-value=7.6e-39 Score=306.13 Aligned_cols=210 Identities=33% Similarity=0.478 Sum_probs=172.1
Q ss_pred CCCcEEEEEeCHHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHcCCeEEEecccEeeecC
Q 043225 220 RVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKN 299 (473)
Q Consensus 220 gv~n~lVvAlD~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrd 299 (473)
.++|++|+|+|+++++.|+++|++|+...............+|++.|++++|.|+.+++++|++||+|+++|+||||+||
T Consensus 2 ~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~d 81 (212)
T PF03407_consen 2 LIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRD 81 (212)
T ss_pred ccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecC
Confidence 36899999999999999999999988765431122124578999999999999999999999999999999999999999
Q ss_pred CccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHHHHHHHHHHhc-CCCCCchhHHHHhhhcCCCCC
Q 043225 300 PLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAAT-SGLSEQPSFYDTLCGAGGSNR 378 (473)
Q Consensus 300 P~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f~e~w~~~~~~-~~~~DQ~~fN~vL~~~~g~~r 378 (473)
|++++ ..+++|+.+++|......+...+..+|+||||+|+|++|++|+++|.+.+.. +..+||.+||+++.+..+
T Consensus 82 p~~~~-~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~--- 157 (212)
T PF03407_consen 82 PLPYF-ENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQAA--- 157 (212)
T ss_pred cHHhh-ccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhccc---
Confidence 99999 3358899999998765444444567899999999999999999999988765 466899999999974211
Q ss_pred CCCCccccCCCCeEEEEcCCCCcCCccccccccccchhhhcccCceEEEEeeccCCchhHHHHH
Q 043225 379 KGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQ 442 (473)
Q Consensus 379 ~g~~~~~~~~~gl~v~~Ld~~~FpnG~~~~~~~~kd~~~~~~~~~p~iVHaN~~~G~~~K~~Rl 442 (473)
...++++++||+.+||||...+.. .+.+.....+.+||+||+||+.|.++|++||
T Consensus 158 --------~~~~~~~~~L~~~~f~~g~~~f~~-~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~ 212 (212)
T PF03407_consen 158 --------RYGGLRVRFLPPSLFPNGHGYFCQ-SRDWAWVPTKNKPYIVHANCCDGKEGKRQRF 212 (212)
T ss_pred --------CCcCcEEEEeCHHHeeccccceee-cchhhhhccccccceEEEcCCCChHhHHhhC
Confidence 116899999999999999744322 2334333225799999999999999999986
No 2
>PLN00176 galactinol synthase
Probab=98.18 E-value=6e-05 Score=77.82 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=105.1
Q ss_pred CCeEEEE--EeChhHHHHHHHHHHHHHhcCCC-cEEEEEeCH---HHHHHHHHCCCCeeeCCCC-CCCCCCCCccccchh
Q 043225 193 NKTVVLA--VAGYSYREMLMSWVCRLRRLRVT-NFVVCALDY---ETYQFSILQGLPVFNDPSA-PSNISFNDCHFGTKC 265 (473)
Q Consensus 193 d~tVIvt--~~N~~y~d~l~Nwl~slr~lgv~-n~lVvAlD~---~a~~~c~~~Gip~f~~~~~-~~~~s~~~~~~gs~~ 265 (473)
.+...|| .+|..|..-+.-...||++.|-+ .++|+..++ +..+.+++.|..+...+.. +.. ....+.. .
T Consensus 21 ~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~---~~~~~~~-~ 96 (333)
T PLN00176 21 AKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPE---NQTQFAM-A 96 (333)
T ss_pred CceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcc---ccccccc-c
Confidence 3556666 35788999999999999999865 566666654 5566777888766543211 110 0112322 2
Q ss_pred HHHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccCCCceEEEecCccCC---------------------Cc
Q 043225 266 FQRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKA---------------------TG 323 (473)
Q Consensus 266 f~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~daDi~~qsD~~~~---------------------~~ 323 (473)
+..+++.|.++-. +. .| .|++.|+|++-++|.-++|.- ++.-+.+..|++.. .+
T Consensus 97 ~~~i~~tKl~iw~-l~--~ydkvlyLDaD~lv~~nid~Lf~~-~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~w 172 (333)
T PLN00176 97 YYVINYSKLRIWE-FV--EYSKMIYLDGDIQVFENIDHLFDL-PDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTW 172 (333)
T ss_pred hhhhhhhhhhhcc-cc--ccceEEEecCCEEeecChHHHhcC-CCcceEEEecccccccccccccccccccccchhhccc
Confidence 4455666777433 33 36 599999999999998777754 22234455555321 00
Q ss_pred cCC----CCCCcCceEEEEeeChhHHHHHHHHHHHHhcCCCCCchhHHHHhh
Q 043225 324 AIN----LPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLC 371 (473)
Q Consensus 324 ~~~----~~~~iNsGf~y~RsT~~Ti~f~e~w~~~~~~~~~~DQ~~fN~vL~ 371 (473)
|.. ....+|+|++.+.++..+-.-+-+.+.........||..+|.++.
T Consensus 173 p~~~g~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~ 224 (333)
T PLN00176 173 PAELGPPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFR 224 (333)
T ss_pred hhhccCCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHc
Confidence 111 123699999999998766433333322211224579999999886
No 3
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=98.08 E-value=0.0001 Score=72.46 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=97.7
Q ss_pred EeChhHHHHHHHHHHHHHhcCCC-cEEEEEe---CHHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHH
Q 043225 200 VAGYSYREMLMSWVCRLRRLRVT-NFVVCAL---DYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSR 275 (473)
Q Consensus 200 ~~N~~y~d~l~Nwl~slr~lgv~-n~lVvAl---D~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~ 275 (473)
++|.+|+..+.--+.|+++.+-+ +++|+.. .++..+.+++.|..+...+...... ........+...++.|..
T Consensus 7 ~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~i~~~~---~~~~~~~~~~~~~~~kl~ 83 (240)
T cd02537 7 LTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPIDPPD---SANLLKRPRFKDTYTKLR 83 (240)
T ss_pred ecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEecCccCCcc---hhhhccchHHHHHhHHHH
Confidence 36779999888888999887543 4444443 4666777888886665543211110 000112345566778866
Q ss_pred HHHHHHHcCC-eEEEecccEeeecCCccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHHHHHHHHH
Q 043225 276 MVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEH 354 (473)
Q Consensus 276 vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f~e~w~~~ 354 (473)
+.. + ..| .|++.|+|++.++|+-+.+.. +..+.+..|.. .+...|+|+|.++++....+ ..++.
T Consensus 84 ~~~-l--~~~drvlylD~D~~v~~~i~~Lf~~--~~~~~a~~d~~-------~~~~fNsGv~l~~~~~~~~~---~~~~~ 148 (240)
T cd02537 84 LWN-L--TEYDKVVFLDADTLVLRNIDELFDL--PGEFAAAPDCG-------WPDLFNSGVFVLKPSEETFN---DLLDA 148 (240)
T ss_pred hcc-c--cccceEEEEeCCeeEccCHHHHhCC--CCceeeecccC-------ccccccceEEEEcCCHHHHH---HHHHH
Confidence 654 2 256 699999999999998887754 11233333321 13579999999998764443 33443
Q ss_pred Hhc---CCCCCchhHHHHhhh
Q 043225 355 AAT---SGLSEQPSFYDTLCG 372 (473)
Q Consensus 355 ~~~---~~~~DQ~~fN~vL~~ 372 (473)
+.. ....||.++|.++++
T Consensus 149 ~~~~~~~~~~DQdiLN~~~~~ 169 (240)
T cd02537 149 LQDTPSFDGGDQGLLNSYFSD 169 (240)
T ss_pred HhccCCCCCCCHHHHHHHHcC
Confidence 322 355799999998863
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=97.78 E-value=0.0016 Score=63.97 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=94.5
Q ss_pred EEEEEeChhHHHHHHHHHHHHHhcCC--CcEEEEEeC--HHHHHHHHHC----CCCe--eeCCCCCCCCCCCCccccchh
Q 043225 196 VVLAVAGYSYREMLMSWVCRLRRLRV--TNFVVCALD--YETYQFSILQ----GLPV--FNDPSAPSNISFNDCHFGTKC 265 (473)
Q Consensus 196 VIvt~~N~~y~d~l~Nwl~slr~lgv--~n~lVvAlD--~~a~~~c~~~----Gip~--f~~~~~~~~~s~~~~~~gs~~ 265 (473)
++++.++..|+..+.--+.|+.+-.- -++.|++.| ++..+.+... +..+ +... .+... ......+.
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~---~~~~~~~~ 78 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVD-ILDSV---DSEHLKRP 78 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEecc-ccCcc---hhhhhcCc
Confidence 45556666899888888888876543 256666543 3333444331 2222 1111 11110 00111122
Q ss_pred HHHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccC-CCceEEEecCccCCC--cc-------CCCCCCcCce
Q 043225 266 FQRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTY-GPFVLAAQSDEYKAT--GA-------INLPRRLNSG 334 (473)
Q Consensus 266 f~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~-~daDi~~qsD~~~~~--~~-------~~~~~~iNsG 334 (473)
+...+..|.. +-.+|. .+ .|++.|+|++.++|.-+++... ++..+.+..|..... .. .......|+|
T Consensus 79 ~~~~~y~RL~-i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsG 156 (246)
T cd00505 79 IKIVTLTKLH-LPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSG 156 (246)
T ss_pred cccceeHHHH-HHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeee
Confidence 3334445554 445677 78 5999999999999987777532 223344444542100 00 0113469999
Q ss_pred EEEEeeChhH-HHHHHHHHHHH----hcCCCCCchhHHHHhhh
Q 043225 335 FYFARSDSST-IAAMEKVVEHA----ATSGLSEQPSFYDTLCG 372 (473)
Q Consensus 335 f~y~RsT~~T-i~f~e~w~~~~----~~~~~~DQ~~fN~vL~~ 372 (473)
+|.+..+.-. ..+++...+.. ......||+++|.++.+
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~ 199 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQ 199 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhc
Confidence 9999988764 44444443322 22467899999998863
No 5
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=97.69 E-value=0.00045 Score=67.63 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred EEEEeChhHHHHHHHHHHHHHhcCC--C-cEEEEEeC--HHHHHHHHHC----CCC--eeeCCCCCCCCCCCCccccchh
Q 043225 197 VLAVAGYSYREMLMSWVCRLRRLRV--T-NFVVCALD--YETYQFSILQ----GLP--VFNDPSAPSNISFNDCHFGTKC 265 (473)
Q Consensus 197 Ivt~~N~~y~d~l~Nwl~slr~lgv--~-n~lVvAlD--~~a~~~c~~~----Gip--~f~~~~~~~~~s~~~~~~gs~~ 265 (473)
|+..+|..|+.-+..-+.|+.+..- + ++.|++.| ++..+.+... +.. .+..+. ... ......+..
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~--~~~--~~~~~~~~~ 78 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDN--DDF--KFFPATTDH 78 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCH--HHH--hcCCccccc
Confidence 6788899999998888888876533 2 56666654 5566666543 322 222221 001 001112334
Q ss_pred HHHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccC-CCceEEEecCccCCCc--------cCCCCCCcCceE
Q 043225 266 FQRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTY-GPFVLAAQSDEYKATG--------AINLPRRLNSGF 335 (473)
Q Consensus 266 f~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~-~daDi~~qsD~~~~~~--------~~~~~~~iNsGf 335 (473)
|...+..|..+- .++. .| .|++.|+|++.++|+-+++... ++.-+.+..|...... .......+|+|+
T Consensus 79 ~~~~~y~rl~l~-~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv 156 (248)
T cd04194 79 ISYATYYRLLIP-DLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGV 156 (248)
T ss_pred ccHHHHHHHHHH-HHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecc
Confidence 445555665553 4555 67 5999999999999988777542 2233444556532110 001234699999
Q ss_pred EEEeeChh-HHHHHHHHHHHHhc----CCCCCchhHHHHhh
Q 043225 336 YFARSDSS-TIAAMEKVVEHAAT----SGLSEQPSFYDTLC 371 (473)
Q Consensus 336 ~y~RsT~~-Ti~f~e~w~~~~~~----~~~~DQ~~fN~vL~ 371 (473)
|.+..+.- ...+.+.+++.+.. ....||.++|.++.
T Consensus 157 ~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~ 197 (248)
T cd04194 157 LLINLKKWREENITEKLLELIKEYGGRLIYPDQDILNAVLK 197 (248)
T ss_pred hheeHHHHHHhhhHHHHHHHHHhCCCceeeCChHHHHHHHh
Confidence 99976532 22344444444332 24679999998886
No 6
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=97.53 E-value=0.00011 Score=72.68 Aligned_cols=200 Identities=14% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeCHHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHH
Q 043225 193 NKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKA 272 (473)
Q Consensus 193 d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~ 272 (473)
.+.||||..|..--+ +..+-..++..++.. =.++|...|.-++..... .+-. .-...+|.
T Consensus 3 ~~vvivt~~d~~~~~---------~~~~~~~~~~~~~~N-r~~Ya~~HgY~~~~~~~~---------~~~~-~~~~~~W~ 62 (239)
T PF05637_consen 3 PKVVIVTASDFESCD---------KPSGDWSYLKKSIQN-RVDYARRHGYDLYYRNIQ---------EYDD-PERPGSWA 62 (239)
T ss_dssp ----------------------------------------HHHHHHHHT-EEEEE-S-----------S---SHHHHHHT
T ss_pred ccccccccccccccc---------cccccccccchhHHH-HHHHHHhcCCEEEEEChH---------HcCC-CCCChhhH
Confidence 467888877753111 222222233333322 346888999887763210 1111 22345699
Q ss_pred HHHHHHHHHHcC---CeEEEecccEeeecCCccc---cccCCCc------eEE-EecCccCCC----ccC-------CCC
Q 043225 273 KSRMVLQILKLG---YNVLLSDVDVYWFKNPLPS---LYTYGPF------VLA-AQSDEYKAT----GAI-------NLP 328 (473)
Q Consensus 273 K~~vl~~lL~lG---y~VL~sDvDVVWlrdP~~~---l~~~~da------Di~-~qsD~~~~~----~~~-------~~~ 328 (473)
|+.++++.+..= -=|++.|+|++...-=+++ +.....- |.- ..-+....+ .+. ...
T Consensus 63 K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~d~ 142 (239)
T PF05637_consen 63 KIPALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQDW 142 (239)
T ss_dssp HHHHHHHHHHH-TT-SEEEEE-TTEEE-----------------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCeEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999653 3499999999976533331 1100000 000 000110000 000 112
Q ss_pred CCcCceEEEEeeChhHHHHHHHHHHHHhc------CCCCCchhHHHHhhhcCCCCCCCCCccccCCCCeEEEEcCCCCcC
Q 043225 329 RRLNSGFYFARSDSSTIAAMEKVVEHAAT------SGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFP 402 (473)
Q Consensus 329 ~~iNsGf~y~RsT~~Ti~f~e~w~~~~~~------~~~~DQ~~fN~vL~~~~g~~r~g~~~~~~~~~gl~v~~Ld~~~Fp 402 (473)
..+|+|+|++|.++-++.|++.|...... ....||.+|-.++... +...-++.++|+..|
T Consensus 143 ~gLNtGsFliRns~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~-------------~~~~~~~~~vpq~~~- 208 (239)
T PF05637_consen 143 NGLNTGSFLIRNSPWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWH-------------PEILSKVALVPQRWF- 208 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-------------ccccccccccccccc-
Confidence 46999999999999999999999865321 1246899998888632 111234567787777
Q ss_pred CccccccccccchhhhcccCceEEEEeecc
Q 043225 403 NGAYLGLWQKKNVRRDCAKKGCLVLHNNWI 432 (473)
Q Consensus 403 nG~~~~~~~~kd~~~~~~~~~p~iVHaN~~ 432 (473)
|+... ...... -+.+.++||..-|
T Consensus 209 nsy~~---~~~~~~---~~~GDfvvhfaGC 232 (239)
T PF05637_consen 209 NSYPE---DECNYQ---YKEGDFVVHFAGC 232 (239)
T ss_dssp ------------------------------
T ss_pred ccccc---cccccc---ccccccccccccc
Confidence 33211 111111 2567899998877
No 7
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=97.19 E-value=0.0011 Score=63.61 Aligned_cols=171 Identities=15% Similarity=0.084 Sum_probs=92.5
Q ss_pred EEEEeChhHHHHHHHHHHHHHhcCC--CcE--EEEEe--CHHHHHHHHHCCCCee-----eCCCCCC--CCCCCCccccc
Q 043225 197 VLAVAGYSYREMLMSWVCRLRRLRV--TNF--VVCAL--DYETYQFSILQGLPVF-----NDPSAPS--NISFNDCHFGT 263 (473)
Q Consensus 197 Ivt~~N~~y~d~l~Nwl~slr~lgv--~n~--lVvAl--D~~a~~~c~~~Gip~f-----~~~~~~~--~~s~~~~~~gs 263 (473)
|+..+|..|+..+..-+.|+++..- .++ .|+.- .++..+.+++.+..+. ....... .. .......
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 79 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEF--QFNSPSK 79 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH----TTS-HCC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhh--hhccccc
Confidence 7888999999999999999988765 344 33332 3445555555443321 1111000 00 0011112
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccCCCc-eEEEecCc-----cCCCcc------CCCCCC
Q 043225 264 KCFQRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPF-VLAAQSDE-----YKATGA------INLPRR 330 (473)
Q Consensus 264 ~~f~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~da-Di~~qsD~-----~~~~~~------~~~~~~ 330 (473)
..+...+..|..+- ++| ..| .||+.|+|++.++|+-+.+....+. -+.+..|. ...... ......
T Consensus 80 ~~~~~~~~~rl~i~-~ll-~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (250)
T PF01501_consen 80 RHFSPATFARLFIP-DLL-PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPY 157 (250)
T ss_dssp TCGGGGGGGGGGHH-HHS-TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTS
T ss_pred ccccHHHHHHhhhH-HHH-hhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCccccc
Confidence 22334555666444 344 566 5999999999999998777532122 23333341 000000 123467
Q ss_pred cCceEEEEeeChhHHHHHHH-HHHHHhc----CCCCCchhHHHHhh
Q 043225 331 LNSGFYFARSDSSTIAAMEK-VVEHAAT----SGLSEQPSFYDTLC 371 (473)
Q Consensus 331 iNsGf~y~RsT~~Ti~f~e~-w~~~~~~----~~~~DQ~~fN~vL~ 371 (473)
.|+|++.+..+.-...-+.. +...+.. -...||..+|.++.
T Consensus 158 fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~ 203 (250)
T PF01501_consen 158 FNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFY 203 (250)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHT
T ss_pred ccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhcc
Confidence 99999999987766544433 3333322 24689999998775
No 8
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=97.18 E-value=0.01 Score=60.04 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=87.6
Q ss_pred EeChhHHHHHHHHHHHHHhcCCC-cEEEEEeCHH---HHHH-------HHHCCCCeeeCCCCCCCCCCCCccccchhHHH
Q 043225 200 VAGYSYREMLMSWVCRLRRLRVT-NFVVCALDYE---TYQF-------SILQGLPVFNDPSAPSNISFNDCHFGTKCFQR 268 (473)
Q Consensus 200 ~~N~~y~d~l~Nwl~slr~lgv~-n~lVvAlD~~---a~~~-------c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~ 268 (473)
++|.+|+.-+.-...+|+++|-+ ..||+..++- +.+. +.+-|+.+...+.... ..+++.|..
T Consensus 7 ~Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~-------~~~~~~~~~ 79 (278)
T cd06914 7 ATNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIA-------SGGDAYWAK 79 (278)
T ss_pred ecChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccC-------CCCCccHHH
Confidence 35899999888888999999875 3444443321 1111 1222443333332100 013334433
Q ss_pred HHHHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHH
Q 043225 269 VTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAA 347 (473)
Q Consensus 269 ~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f 347 (473)
++.|..+-.. ..| .|++.|+|++-++|.-++|.-..+..+. .-+ ....+|+|+|.+.++..+-.-
T Consensus 80 -~~tKl~~~~l---~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~A-ap~---------~~~~FNSGvmvi~ps~~~~~~ 145 (278)
T cd06914 80 -SLTKLRAFNQ---TEYDRIIYFDSDSIIRHPMDELFFLPNYIKFA-APR---------AYWKFASHLMVIKPSKEAFKE 145 (278)
T ss_pred -HHHHHHhccc---cceeeEEEecCChhhhcChHHHhcCCccccee-eec---------CcceecceeEEEeCCHHHHHH
Confidence 3566665543 347 5999999999999876666431011111 111 112699999999999876443
Q ss_pred HHH-HHHHHh-cCCCCCchhHHHHhhh
Q 043225 348 MEK-VVEHAA-TSGLSEQPSFYDTLCG 372 (473)
Q Consensus 348 ~e~-w~~~~~-~~~~~DQ~~fN~vL~~ 372 (473)
+.+ ...... +....||.++|.++.+
T Consensus 146 l~~~~~~~~~~~~~~~DQdiLN~~~~~ 172 (278)
T cd06914 146 LMTEILPAYLNKKNEYDMDLINEEFYN 172 (278)
T ss_pred HHHHHHHhcccCCCCCChHHHHHHHhC
Confidence 333 323222 2356799999998874
No 9
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=96.88 E-value=0.07 Score=54.70 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=77.2
Q ss_pred HHHHHcCC-eEEEecccEeeecCCcccccc---CCCceEEEec-CccC------C---CccCCCCCCcCceEEEEeeChh
Q 043225 278 LQILKLGY-NVLLSDVDVYWFKNPLPSLYT---YGPFVLAAQS-DEYK------A---TGAINLPRRLNSGFYFARSDSS 343 (473)
Q Consensus 278 ~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~---~~daDi~~qs-D~~~------~---~~~~~~~~~iNsGf~y~RsT~~ 343 (473)
-++|. -+ .||+.|+||+.++|.-+++.. ..+.-+.+.. |... . ..+......+|+|+|++-=+.-
T Consensus 91 p~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~~~~gFNSGVmLmNL~~w 169 (304)
T cd06430 91 PSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYYGKTGVNSGVMLMNLTRM 169 (304)
T ss_pred HHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCcccccccccceeeeeHHHH
Confidence 34555 34 799999999999998776643 2221233332 2100 0 0111122349999999953221
Q ss_pred H------------HHHHHHHHHHHhc----CCCCCchhHHHHhhhcCCCCCCCCCccccCCCCeEEEEcCCC-CcCCccc
Q 043225 344 T------------IAAMEKVVEHAAT----SGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRN-LFPNGAY 406 (473)
Q Consensus 344 T------------i~f~e~w~~~~~~----~~~~DQ~~fN~vL~~~~g~~r~g~~~~~~~~~gl~v~~Ld~~-~FpnG~~ 406 (473)
- ...-+.|++.+++ -...||+++|.++.+. .-++.+||.. -|.-.+|
T Consensus 170 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDiLN~v~~~~----------------p~~~~~Lp~~wN~~~d~~ 233 (304)
T cd06430 170 RRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDLINIIFHHN----------------PEMLYVFPCHWNYRPDHC 233 (304)
T ss_pred HhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHHHHHHHcCC----------------CCeEEEcCccccCCccce
Confidence 1 1222334433332 2468999999888631 1246677742 2222444
Q ss_pred cccccccchhhhcccCceEEEEeeccCCchhHHHHHHH
Q 043225 407 LGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVL 444 (473)
Q Consensus 407 ~~~~~~kd~~~~~~~~~p~iVHaN~~~G~~~K~~Rlre 444 (473)
.+ ..+ .. ..+..++.++|+|-..-+..|...+|.
T Consensus 234 ~y--~~~-~~-~~~~~~~~~~H~n~~~~~~~~~~~f~~ 267 (304)
T cd06430 234 MY--GSN-CK-AAEEEGVFILHGNRGVYHSDKQPAFRA 267 (304)
T ss_pred ee--ccc-cc-ccccccceEEEcCCCCCCCccchHHHH
Confidence 31 111 10 112468899999965445566655553
No 10
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=96.22 E-value=0.066 Score=56.55 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCC---eEEEecccEeeecCCccc-cccCCCceEEEec-Cc-cCCCccCCCCCCcCceEEEEeeCh
Q 043225 269 VTKAKSRMVLQILKLGY---NVLLSDVDVYWFKNPLPS-LYTYGPFVLAAQS-DE-YKATGAINLPRRLNSGFYFARSDS 342 (473)
Q Consensus 269 ~~~~K~~vl~~lL~lGy---~VL~sDvDVVWlrdP~~~-l~~~~daDi~~qs-D~-~~~~~~~~~~~~iNsGf~y~RsT~ 342 (473)
-.|.|+-++++++..-- -+++.|.|++.+.-++.. +..+.+.++++-. +. .-. ......+|+|+|++|.++
T Consensus 180 ~~WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~~~~l~~---~kdW~GLNtGsFLIRNcq 256 (429)
T PLN03182 180 GFWAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGWDELVYD---QKSWIGLNTGSFLIRNCQ 256 (429)
T ss_pred cchhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccchhhhee---ccccCccceeeEEEEcCH
Confidence 34899999999987643 489999999997644432 2233333333221 10 000 011346999999999999
Q ss_pred hHHHHHHHHHHHHh--------------------cCCCCCchhHHHHhhhcCCCCCCCCCccccCCCCeEEEEcCCCCcC
Q 043225 343 STIAAMEKVVEHAA--------------------TSGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFP 402 (473)
Q Consensus 343 ~Ti~f~e~w~~~~~--------------------~~~~~DQ~~fN~vL~~~~g~~r~g~~~~~~~~~gl~v~~Ld~~~Fp 402 (473)
=++.|++.|..+-- .....||.++-.+|..+. ..-+-++.+-+..+|
T Consensus 257 WSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~------------~~w~~kv~le~~y~l- 323 (429)
T PLN03182 257 WSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQR------------ERWGDKVYLENSYYL- 323 (429)
T ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcc------------hhhccceEEeeccee-
Confidence 99999999965310 125789999988886321 123446666665555
Q ss_pred Cccccccccc-cchhhh-----cccCceEEEEeecc
Q 043225 403 NGAYLGLWQK-KNVRRD-----CAKKGCLVLHNNWI 432 (473)
Q Consensus 403 nG~~~~~~~~-kd~~~~-----~~~~~p~iVHaN~~ 432 (473)
+|....+-.. .+..+. .....|+|.|..-|
T Consensus 324 ~Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~Gc 359 (429)
T PLN03182 324 HGYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVGC 359 (429)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCcccceeEeeccc
Confidence 5753322111 111111 01356999999876
No 11
>PLN03181 glycosyltransferase; Provisional
Probab=96.04 E-value=0.1 Score=55.31 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=75.4
Q ss_pred HHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHcC---CeEEEecccEeeecCCccc--cccCCC
Q 043225 235 QFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLG---YNVLLSDVDVYWFKNPLPS--LYTYGP 309 (473)
Q Consensus 235 ~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~lG---y~VL~sDvDVVWlrdP~~~--l~~~~d 309 (473)
++|+++|+.+|....... .. ....|.|+-+++..+..= --|++.|.|++.+ ||-.. +..+.+
T Consensus 159 dYArrHGY~lf~~~a~Ld------~~------~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIM-Np~~sLPl~ry~~ 225 (453)
T PLN03181 159 DYCRIHGYDIFYNNALLH------PK------MNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFT-DMDFKLPLHRYRD 225 (453)
T ss_pred HHHHHhCCcEEEeccccC------cc------CchhhhHHHHHHHHHHHCCCceEEEEecCCceee-cCCCCCCHhhcCC
Confidence 567777777765432100 00 145788999999877652 2599999999987 44211 223333
Q ss_pred ceEEEecCccCCCccC--CCCCCcCceEEEEeeChhHHHHHHHHHHHH-------------h-------cCCCCCchhHH
Q 043225 310 FVLAAQSDEYKATGAI--NLPRRLNSGFYFARSDSSTIAAMEKVVEHA-------------A-------TSGLSEQPSFY 367 (473)
Q Consensus 310 aDi~~qsD~~~~~~~~--~~~~~iNsGf~y~RsT~~Ti~f~e~w~~~~-------------~-------~~~~~DQ~~fN 367 (473)
..+++- ++... .+ .....+|+|.|++|.++=+..|++.|..+- . .+..+||.++-
T Consensus 226 ~NLvvh--g~p~~-vy~~qdw~GlN~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLv 302 (453)
T PLN03181 226 HNLVVH--GWPKL-IYEKRSWTALNAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALV 302 (453)
T ss_pred cccccc--CCccc-ccccccccccceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHH
Confidence 333221 10000 00 123579999999999999999999997531 0 13578999998
Q ss_pred HHhhh
Q 043225 368 DTLCG 372 (473)
Q Consensus 368 ~vL~~ 372 (473)
.+|..
T Consensus 303 yll~~ 307 (453)
T PLN03181 303 YLLYK 307 (453)
T ss_pred HHHHh
Confidence 77764
No 12
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.40 E-value=0.09 Score=54.40 Aligned_cols=174 Identities=13% Similarity=0.036 Sum_probs=96.9
Q ss_pred EEEEEeChhHHHHHH----HHHHHHHhcCCC-cEEEEEeCHHHHHHHHHC----CCCeeeCCCCCCCCCCCCccccchhH
Q 043225 196 VVLAVAGYSYREMLM----SWVCRLRRLRVT-NFVVCALDYETYQFSILQ----GLPVFNDPSAPSNISFNDCHFGTKCF 266 (473)
Q Consensus 196 VIvt~~N~~y~d~l~----Nwl~slr~lgv~-n~lVvAlD~~a~~~c~~~----Gip~f~~~~~~~~~s~~~~~~gs~~f 266 (473)
-|+..++..|+.-+. +-+++.++..++ +.++.-++++-.+.+.+. +..........+.. .+...-++.|
T Consensus 4 ~Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~--~~~~~~~~~~ 81 (325)
T COG1442 4 PIAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPF--LDYPPFTKRF 81 (325)
T ss_pred cEEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhh--hcccccccch
Confidence 366777888886444 444444554556 788888888888877542 22211110001111 1112146677
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEecccEeeecCCccccccC-CCceEEEecCccCCC---------ccCCCCCCcCceEE
Q 043225 267 QRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTY-GPFVLAAQSDEYKAT---------GAINLPRRLNSGFY 336 (473)
Q Consensus 267 ~~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~~-~daDi~~qsD~~~~~---------~~~~~~~~iNsGf~ 336 (473)
..|+-.|.-+. .++...=.++++|+||+..++--+.+... ++.-+.+..|..... .+...+...|+|++
T Consensus 82 s~~v~~R~fia-dlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~~~~~~~~~~~~~yFNaG~l 160 (325)
T COG1442 82 SKMVLVRYFLA-DLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNAGVL 160 (325)
T ss_pred HHHHHHHHHHH-HhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhhhhHhhhcccccccCcccee
Confidence 77877776554 45566667999999999999876655432 222344444553211 11233456999999
Q ss_pred EEe-----eChhHHHHHHHHHHHHhcCCCCCchhHHHHhhh
Q 043225 337 FAR-----SDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCG 372 (473)
Q Consensus 337 y~R-----sT~~Ti~f~e~w~~~~~~~~~~DQ~~fN~vL~~ 372 (473)
++- ....+.++++-..+.-..-...||.++|.++.+
T Consensus 161 linl~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN~i~~~ 201 (325)
T COG1442 161 LINLKLWREENIFEKLIELLKDKENDLLYPDQDILNMIFED 201 (325)
T ss_pred eehHHHHHHhhhHHHHHHHHhccccccCCccccHHHHHHHh
Confidence 983 222222222111111111235699999998874
No 13
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=95.39 E-value=0.36 Score=50.11 Aligned_cols=171 Identities=12% Similarity=-0.006 Sum_probs=84.1
Q ss_pred CeEEEEEeChhHHHHHHHHHHHHHhcC--CC-cEEEEE--eCHHHHHHHHH----CCCCe--eeCCC-CCCCCCCCCccc
Q 043225 194 KTVVLAVAGYSYREMLMSWVCRLRRLR--VT-NFVVCA--LDYETYQFSIL----QGLPV--FNDPS-APSNISFNDCHF 261 (473)
Q Consensus 194 ~tVIvt~~N~~y~d~l~Nwl~slr~lg--v~-n~lVvA--lD~~a~~~c~~----~Gip~--f~~~~-~~~~~s~~~~~~ 261 (473)
..=|+..+|..|+.-+.--+.|+-.-. .. ++.|+. ++++..+.+.. .+..+ +.... ......
T Consensus 25 ~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~~~~~~------ 98 (334)
T PRK15171 25 SLDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCERLKSLP------ 98 (334)
T ss_pred ceeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHHHhCCc------
Confidence 345777788888877766666664322 11 344443 33344443322 23222 22111 011110
Q ss_pred cchhHHHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCcccccc-CCCceEEEec-CccCC---------CccCCCCC
Q 043225 262 GTKCFQRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQS-DEYKA---------TGAINLPR 329 (473)
Q Consensus 262 gs~~f~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qs-D~~~~---------~~~~~~~~ 329 (473)
.+..+...+..|..+ -++|...+ .||+.|+|++-.+|.-+++.. .++.-+.+.. |.... ..+.....
T Consensus 99 ~~~~~s~atY~Rl~i-p~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~~~~~ 177 (334)
T PRK15171 99 STKNWTYATYFRFII-ADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPGLASG 177 (334)
T ss_pred ccCcCCHHHHHHHHH-HHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCcccccc
Confidence 011233444455433 34554446 699999999999988777653 1212233332 32110 00000123
Q ss_pred CcCceEEEEe-----eChhHHHHHHHHHHH-H-hcCCCCCchhHHHHhh
Q 043225 330 RLNSGFYFAR-----SDSSTIAAMEKVVEH-A-ATSGLSEQPSFYDTLC 371 (473)
Q Consensus 330 ~iNsGf~y~R-----sT~~Ti~f~e~w~~~-~-~~~~~~DQ~~fN~vL~ 371 (473)
.+|+|++++- ...-+.++++...+. . ..-...||+++|.++.
T Consensus 178 YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~ 226 (334)
T PRK15171 178 YFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLA 226 (334)
T ss_pred ceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHc
Confidence 6999999994 333333333222111 0 0123569999999886
No 14
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=94.40 E-value=0.68 Score=46.90 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=83.3
Q ss_pred EEEEEeChhHHHHHHHHHHHHHhc-CCC-cEEEEEeC--HHHHHHHHHC----CCCeeeCCC--CCCCCCCCCccccchh
Q 043225 196 VVLAVAGYSYREMLMSWVCRLRRL-RVT-NFVVCALD--YETYQFSILQ----GLPVFNDPS--APSNISFNDCHFGTKC 265 (473)
Q Consensus 196 VIvt~~N~~y~d~l~Nwl~slr~l-gv~-n~lVvAlD--~~a~~~c~~~----Gip~f~~~~--~~~~~s~~~~~~gs~~ 265 (473)
+||+.+ ..|.+.+..-+.|+-.- ... ++-|+..+ ++..+.+.+. +..+...+. ..+.+. ...+..
T Consensus 4 ~iv~~~-~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~----~~~~~~ 78 (280)
T cd06431 4 AIVCAG-YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVS----WIPNKH 78 (280)
T ss_pred EEEEcc-CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhc----cCcccc
Confidence 455555 78888888887776443 222 44455432 3333444321 222211111 001110 001112
Q ss_pred HHHH-HHHHHHHHHHHHHcCC-eEEEecccEeeecCCcccccc---CCCceEEEecCccC----CC-----cc-CCCCCC
Q 043225 266 FQRV-TKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYT---YGPFVLAAQSDEYK----AT-----GA-INLPRR 330 (473)
Q Consensus 266 f~~~-~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~---~~daDi~~qsD~~~----~~-----~~-~~~~~~ 330 (473)
|... +..|. ++-++|..-+ .||+.|+|+|...|..+++.. ..+..+++..+... .. .+ ...+..
T Consensus 79 ~s~~y~y~RL-~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~y 157 (280)
T cd06431 79 YSGIYGLMKL-VLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRG 157 (280)
T ss_pred hhhHHHHHHH-HHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCcccccc
Confidence 2221 22344 3445665445 699999999999999877653 21222333322211 00 00 111247
Q ss_pred cCceEEEEe-----eChhHHHHHHHHHHHH---hcCCCCCchhHHHHhhh
Q 043225 331 LNSGFYFAR-----SDSSTIAAMEKVVEHA---ATSGLSEQPSFYDTLCG 372 (473)
Q Consensus 331 iNsGf~y~R-----sT~~Ti~f~e~w~~~~---~~~~~~DQ~~fN~vL~~ 372 (473)
+|+|+|.+- ...-+.+++....+.. ......||+++|.++.+
T Consensus 158 FNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~ 207 (280)
T cd06431 158 FNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQ 207 (280)
T ss_pred eeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcC
Confidence 999999994 3333333221111111 12357899999998863
No 15
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=94.36 E-value=1 Score=44.82 Aligned_cols=94 Identities=9% Similarity=-0.076 Sum_probs=50.9
Q ss_pred HHHHHHcCC-eEEEecccEeeecCCcccccc-CCCceEEEecCccCCC--c------------cCCCCCCcCceEEEE--
Q 043225 277 VLQILKLGY-NVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKAT--G------------AINLPRRLNSGFYFA-- 338 (473)
Q Consensus 277 l~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~~--~------------~~~~~~~iNsGf~y~-- 338 (473)
+..+|...+ .||+.|+|++...|--++... .++.-+.+..|+-... . ........|+|+|++
T Consensus 88 ~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSGVmliNL 167 (248)
T cd06432 88 LDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISALYVVDL 167 (248)
T ss_pred HHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccceeeEEEeH
Confidence 334787766 699999999999776555532 2222233333321100 0 001123689999998
Q ss_pred ---eeChhHHHHHHHHHHHHh-c---CCCCCchhHHHHhh
Q 043225 339 ---RSDSSTIAAMEKVVEHAA-T---SGLSEQPSFYDTLC 371 (473)
Q Consensus 339 ---RsT~~Ti~f~e~w~~~~~-~---~~~~DQ~~fN~vL~ 371 (473)
|...-+.++++.. +.+. . -...||+++|.++.
T Consensus 168 ~~wR~~~i~~~~~~~~-~~l~~~~~~l~~~DQDiLN~v~~ 206 (248)
T cd06432 168 KRFRRIAAGDRLRGQY-QQLSQDPNSLANLDQDLPNNMQH 206 (248)
T ss_pred HHHHHHhHHHHHHHHH-HHHhcCCCccccCCchhhHHHhc
Confidence 4333333222111 1121 1 13569999998885
No 16
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=90.47 E-value=0.6 Score=45.40 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEecccEeeecCCccccccC--CCceEEEecCccCCCccCCCCCCcCceEEEEeeChhH
Q 043225 267 QRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTY--GPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSST 344 (473)
Q Consensus 267 ~~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~~--~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~T 344 (473)
...+.+|--++..+|..==-|||.|+||.- -||-..+..+ +..|+..- |.+. ...+.+|-|++|+|+.+
T Consensus 25 kd~fFrRHCvva~~L~~~~~vlflDaDigV-vNp~~~iEefid~~~Di~fy-dR~~-------n~Ei~agsYlvkNT~~~ 95 (222)
T PF03314_consen 25 KDKFFRRHCVVAKILPEYDWVLFLDADIGV-VNPNRRIEEFIDEGYDIIFY-DRFF-------NWEIAAGSYLVKNTEYS 95 (222)
T ss_pred hhHHHHHHHHHHHHhccCCEEEEEcCCcee-ecCcccHHHhcCCCCcEEEE-eccc-------chhhhhccceeeCCHHH
Confidence 456778888889999865569999999974 4675444432 34566544 3332 13588999999999999
Q ss_pred HHHHHHHHHHHh-cC---CCCCchhHHHHhhh
Q 043225 345 IAAMEKVVEHAA-TS---GLSEQPSFYDTLCG 372 (473)
Q Consensus 345 i~f~e~w~~~~~-~~---~~~DQ~~fN~vL~~ 372 (473)
+.|++.|..... .| ...|-.++...|.+
T Consensus 96 ~~fl~~~a~~E~~lP~sfhGtDNGAlH~~L~e 127 (222)
T PF03314_consen 96 RDFLKEWADYEFKLPNSFHGTDNGALHIFLAE 127 (222)
T ss_pred HHHHHHHhhhCccCCCccccCccHHHHHHHHH
Confidence 999999987532 12 24577777666654
No 17
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=89.28 E-value=0.98 Score=45.23 Aligned_cols=90 Identities=19% Similarity=0.022 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecccEeeecCCccccccC-CCceEEEecCccCCCccCCCCCCcCceEEEEe-----eC
Q 043225 268 RVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTY-GPFVLAAQSDEYKATGAINLPRRLNSGFYFAR-----SD 341 (473)
Q Consensus 268 ~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~~-~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~R-----sT 341 (473)
.++..|..+-. +|..==.|++.|+|++-.+|--+++... ++.-+.+..| ..|+|++++- ..
T Consensus 99 ~~~y~Rl~ip~-llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------------yfNsGV~linl~~wr~~ 165 (257)
T cd06429 99 LLNFARFYLPE-LFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------------SWNPGVNVVNLTEWRRQ 165 (257)
T ss_pred HHHHHHHHHHH-HhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh------------hcccceEEEeHHHHHhc
Confidence 45555554433 3332126999999999999987777531 2222222222 5899999994 44
Q ss_pred hhHHHHHHHHHHHHhc-----CCCCCchhHHHHhh
Q 043225 342 SSTIAAMEKVVEHAAT-----SGLSEQPSFYDTLC 371 (473)
Q Consensus 342 ~~Ti~f~e~w~~~~~~-----~~~~DQ~~fN~vL~ 371 (473)
.-+.+++ .|++.... ....||+++|.++.
T Consensus 166 ~i~~~~~-~~~~~~~~~~~~~~~~~dqd~ln~~~~ 199 (257)
T cd06429 166 NVTETYE-KWMELNQEEEVTLWKLITLPPGLIVFY 199 (257)
T ss_pred cHHHHHH-HHHHHhhhcccchhhcCCccHHHHHcc
Confidence 4444444 34433221 23468999998775
No 18
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=86.92 E-value=3.2 Score=43.57 Aligned_cols=167 Identities=14% Similarity=0.046 Sum_probs=94.0
Q ss_pred HHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHcCC---eEEEecccEeeecCCcc---cccc-
Q 043225 234 YQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGY---NVLLSDVDVYWFKNPLP---SLYT- 306 (473)
Q Consensus 234 ~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~lGy---~VL~sDvDVVWlrdP~~---~l~~- 306 (473)
.++|+++|+..+....... ..+ .-....|.|+-+|++.+..=- =+++.|.|++.+.-=+. ++..
T Consensus 132 idYA~rHgy~~~~~~~~~~------~~~---~e~~~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn~~lsL~~~ilk~ 202 (364)
T KOG4748|consen 132 IDYARRHGYEFEYKNATLD------KRY---HELPGVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMNPDLSLQDHILKP 202 (364)
T ss_pred HHHHHHhCCeEEEEecccc------ccc---ccccchhHHhHHHHHHHHHCCCCcEEEEecccchhhCcccchhHHhcCH
Confidence 3678888988665332110 111 112457899999999888754 38999999987642121 1110
Q ss_pred -------CC-CceEEEecC-------ccCCCccCC-------CCCCcCceEEEEeeChhHHHHHHHHHHHHh---cCCCC
Q 043225 307 -------YG-PFVLAAQSD-------EYKATGAIN-------LPRRLNSGFYFARSDSSTIAAMEKVVEHAA---TSGLS 361 (473)
Q Consensus 307 -------~~-daDi~~qsD-------~~~~~~~~~-------~~~~iNsGf~y~RsT~~Ti~f~e~w~~~~~---~~~~~ 361 (473)
.. +.-.+.... .+...++.+ ..+.+|+|=+++|.++-++.+++.|-+-+- .-...
T Consensus 203 ~~L~~~l~~nd~~~~~~~n~~~~~~~~~~~d~~~~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~~~~~~~ 282 (364)
T KOG4748|consen 203 ENLVTHLLRNDQKSINPLNIFRLRPRTPSLDDLEDIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYELLWGQK 282 (364)
T ss_pred HHHHHhhccccccccccCCccccccccccccchhhhceecccCCCCccccceEEecCccchhHHHhccCHHHHhhccchH
Confidence 01 000000000 000001111 134699999999999999999999965432 23456
Q ss_pred CchhHHHHhhhcCCCCCCCCCccccCCCCeEEEEcCCC---CcCCccccccccccchhhhcccCceEEEEeecc
Q 043225 362 EQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRN---LFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWI 432 (473)
Q Consensus 362 DQ~~fN~vL~~~~g~~r~g~~~~~~~~~gl~v~~Ld~~---~FpnG~~~~~~~~kd~~~~~~~~~p~iVHaN~~ 432 (473)
||.++-.++..+ .. + -=.+++|+.. .|++|++.. . .+.+++++|.--|
T Consensus 283 Eq~al~~~~e~h--~~-------l----~~~vgilp~r~ins~~~~~~~~--g--------~~egdlvvhFaGC 333 (364)
T KOG4748|consen 283 EQDALGHFLENH--PQ-------L----HSHVGILPLRYINSYPNGAPGY--G--------YEEGDLVVHFAGC 333 (364)
T ss_pred HHHHHHHHHhhc--hh-------h----hhheeeccHHHHhcCCCCCCCC--c--------cccCCeEEEeccc
Confidence 888887777532 10 0 0134555543 466666531 1 2567889999888
No 19
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=82.07 E-value=5 Score=40.29 Aligned_cols=96 Identities=27% Similarity=0.277 Sum_probs=53.5
Q ss_pred EEEEeChhHHHHHHHHHHHHHhcCCC--cEEEEE----eCHHHHHHHHH-C-----CCCeeeCCCCCCCCCCCCccccch
Q 043225 197 VLAVAGYSYREMLMSWVCRLRRLRVT--NFVVCA----LDYETYQFSIL-Q-----GLPVFNDPSAPSNISFNDCHFGTK 264 (473)
Q Consensus 197 Ivt~~N~~y~d~l~Nwl~slr~lgv~--n~lVvA----lD~~a~~~c~~-~-----Gip~f~~~~~~~~~s~~~~~~gs~ 264 (473)
||+++...+..++...|..||++|-+ ==|+.+ ++++..+.+.. + ++.|...+.... ......
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~------~~~~~~ 77 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLG------KSFSKK 77 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeeccccc------cccccC
Confidence 34444557888888899999998753 224444 45555555543 2 222322221111 111111
Q ss_pred hHHHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCccccc
Q 043225 265 CFQRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLY 305 (473)
Q Consensus 265 ~f~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~ 305 (473)
.|+ .|+ +.++-.=+ +||+.|+|+|-++||-.+|.
T Consensus 78 ~~~----~K~---lA~l~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 78 GFQ----NKW---LALLFSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred Cch----hhh---hhhhhCCcceEEEEcCCcccccCHHHHhc
Confidence 121 232 22334444 69999999999999998884
No 20
>PLN02523 galacturonosyltransferase
Probab=81.65 E-value=44 Score=37.20 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=57.8
Q ss_pred ccchhHH-HHHHHHHHHHHHHHHcCCeEEEecccEeeecCCcccccc-CCCceEEEecCccCCC----cc--CC---CCC
Q 043225 261 FGTKCFQ-RVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKAT----GA--IN---LPR 329 (473)
Q Consensus 261 ~gs~~f~-~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~~----~~--~~---~~~ 329 (473)
|..+.|. ..+-.|..+ -+++..=-.||+.|.|||-.+|--+++.- .++.-+.+..|+.... .. .. ...
T Consensus 354 ~~~p~ylS~~ny~Rf~I-PeLLP~ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~ 432 (559)
T PLN02523 354 FRNPKYLSMLNHLRFYL-PEMYPKLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKE 432 (559)
T ss_pred ccCcchhhHHHHHHHHH-HHHhcccCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhh
Confidence 3334443 334455443 34555323699999999999998777653 1222233334542100 00 00 011
Q ss_pred CcCc-------eEEEE-----eeChhHHHHHHHHHHHHhcCCCCCchhHHH
Q 043225 330 RLNS-------GFYFA-----RSDSSTIAAMEKVVEHAATSGLSEQPSFYD 368 (473)
Q Consensus 330 ~iNs-------Gf~y~-----RsT~~Ti~f~e~w~~~~~~~~~~DQ~~fN~ 368 (473)
.+|+ |++++ |-..-|.++ ..|.+.-.+...+||.++|.
T Consensus 433 yFNs~aC~wnsGVmlINL~~WRe~nITek~-~~w~~ln~~~~l~DqdaLpp 482 (559)
T PLN02523 433 KFNPKACAWAYGMNIFDLDAWRREKCTEQY-HYWQNLNENRTLWKLGTLPP 482 (559)
T ss_pred CcCCCcccccCCcEEEeHHHHHHhchHHHH-HHHHHhccccccccccccch
Confidence 3455 99998 555555554 45654433457889998863
No 21
>PLN02829 Probable galacturonosyltransferase
Probab=80.81 E-value=4.6 Score=45.16 Aligned_cols=107 Identities=11% Similarity=0.014 Sum_probs=61.5
Q ss_pred ccchhH-HHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCcccccc-CCCceEEEecCccCC----------Ccc---
Q 043225 261 FGTKCF-QRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKA----------TGA--- 324 (473)
Q Consensus 261 ~gs~~f-~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~----------~~~--- 324 (473)
+..+.| ..++..|..+ -+++. .+ .||+.|.|||-.+|--+++.- .++.-+.+..|+... ..|
T Consensus 434 ~r~p~ylS~lnY~RfyL-PeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~ 511 (639)
T PLN02829 434 YRNPKYLSILNHLRFYL-PEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLIS 511 (639)
T ss_pred cCCcchhhHHHHHHHHH-HHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhh
Confidence 333333 3344455543 34555 34 699999999999998777653 222223333443210 000
Q ss_pred --CC-CCCCcCceEEEE-----eeChhHHHHHHHHHHHHhcCCCCCchhHHHHh
Q 043225 325 --IN-LPRRLNSGFYFA-----RSDSSTIAAMEKVVEHAATSGLSEQPSFYDTL 370 (473)
Q Consensus 325 --~~-~~~~iNsGf~y~-----RsT~~Ti~f~e~w~~~~~~~~~~DQ~~fN~vL 370 (473)
++ .....|+|++++ |-..-|..+. .|++.-.....+||.++|..|
T Consensus 512 ~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~-~wm~~n~~r~L~dlgaLPp~L 564 (639)
T PLN02829 512 KNFDPHACGWAYGMNVFDLDEWKRQNITEVYH-SWQKLNHDRQLWKLGTLPPGL 564 (639)
T ss_pred hccCCcccceecceEEEeHHHHHHhChHHHHH-HHHHHccCCccccccCCChHH
Confidence 01 122578999998 5555555544 676544455679998888755
No 22
>PLN02659 Probable galacturonosyltransferase
Probab=78.17 E-value=16 Score=40.37 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=57.6
Q ss_pred ccchhHHHH-HHHHHHHHHHHHHcCC-eEEEecccEeeecCCcccccc-CCCceEEEecCccCC-------C--------
Q 043225 261 FGTKCFQRV-TKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKA-------T-------- 322 (473)
Q Consensus 261 ~gs~~f~~~-~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~-------~-------- 322 (473)
+..+.|..+ +..|..+- ++|.. + .||+.|.|||-.+|--+++.- .++.-+.+..|+... .
T Consensus 321 ~~~p~ylS~~nY~RL~IP-eLLP~-LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s 398 (534)
T PLN02659 321 ALSPKYNSVMNHIRIHLP-ELFPS-LNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFS 398 (534)
T ss_pred cCCccceeHHHHHHHHHH-HHhhh-cCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhccc
Confidence 455666544 55565543 44442 3 799999999999988776643 222222222343110 0
Q ss_pred cc-----CC-CCCCcCceEEEE-----eeChhHHHHHHHHHHHH--hcCCCCCchhHHH
Q 043225 323 GA-----IN-LPRRLNSGFYFA-----RSDSSTIAAMEKVVEHA--ATSGLSEQPSFYD 368 (473)
Q Consensus 323 ~~-----~~-~~~~iNsGf~y~-----RsT~~Ti~f~e~w~~~~--~~~~~~DQ~~fN~ 368 (473)
.| .+ .....|+|++++ |-..-|.+++ .|++.. ..-..+||.++|.
T Consensus 399 ~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l-~~l~~n~~~~l~l~DQdaLp~ 456 (534)
T PLN02659 399 HPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYH-HWLEENLKSDLSLWQLGTLPP 456 (534)
T ss_pred chhhhhccCccccceecceeEeeHHHHHhcChHHHHH-HHHHhcccccccccccccchH
Confidence 00 01 112577899998 5555555544 343322 2245789999963
No 23
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=77.87 E-value=12 Score=42.04 Aligned_cols=107 Identities=11% Similarity=0.014 Sum_probs=62.0
Q ss_pred cccchhHHHH-HHHHHHHHHHHHHcCCeEEEecccEeeecCCcccccc-CCCceEEEecCccCC---C-------cc---
Q 043225 260 HFGTKCFQRV-TKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKA---T-------GA--- 324 (473)
Q Consensus 260 ~~gs~~f~~~-~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~---~-------~~--- 324 (473)
.+..+.|..+ +-.|.. +-++|..=-.||+.|.|||-.+|.-+++.- .++.-+.+..|+... . .|
T Consensus 451 k~r~p~ylS~lnY~Rf~-LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~ 529 (657)
T PLN02910 451 KYRNPKYLSMLNHLRFY-LPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKIS 529 (657)
T ss_pred ccCCcchhhHHHHHHHH-HHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhh
Confidence 4444555443 444544 444555322699999999999998776643 222223333344211 0 00
Q ss_pred --CC-CCCCcCceEEEE-----eeChhHHHHHHHHHHHHhcCCCCCchhHHH
Q 043225 325 --IN-LPRRLNSGFYFA-----RSDSSTIAAMEKVVEHAATSGLSEQPSFYD 368 (473)
Q Consensus 325 --~~-~~~~iNsGf~y~-----RsT~~Ti~f~e~w~~~~~~~~~~DQ~~fN~ 368 (473)
++ ..-..|+|++++ |-..-|. .++.|.+.-.+...+||.+++-
T Consensus 530 ~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~eln~~~~L~dqgsLPp 580 (657)
T PLN02910 530 ENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDLNEDRTLWKLGSLPP 580 (657)
T ss_pred hccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHhcccccccccCCCCh
Confidence 00 112456799998 4445555 6777877655667899988884
No 24
>PLN02718 Probable galacturonosyltransferase
Probab=75.96 E-value=9.1 Score=42.77 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecccEeeecCCcccccc-CCCceEEEecCccCC-----C--------cc-----CC-C
Q 043225 268 RVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKA-----T--------GA-----IN-L 327 (473)
Q Consensus 268 ~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~-----~--------~~-----~~-~ 327 (473)
..+..|..+-. ++..=-.|++.|+|||..+|..+++.- .++.-+.+..|+... . .| ++ .
T Consensus 403 ~~~y~Rl~ipe-llp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~ 481 (603)
T PLN02718 403 ALNHARFYLPD-IFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPK 481 (603)
T ss_pred HHHHHHHHHHH-HhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCC
Confidence 44555655444 444322799999999999998777643 222223333444211 0 00 00 1
Q ss_pred CCCcCceEEEE-----eeChhHHHHHHHHHHHHhcCCCCCchhHH
Q 043225 328 PRRLNSGFYFA-----RSDSSTIAAMEKVVEHAATSGLSEQPSFY 367 (473)
Q Consensus 328 ~~~iNsGf~y~-----RsT~~Ti~f~e~w~~~~~~~~~~DQ~~fN 367 (473)
.-..|+|++.+ |-..-|.. +..|++.-.....+||.++|
T Consensus 482 ~CyfNsGVlLIDLk~WReenITe~-~~~~l~~n~~~~l~dqdaLp 525 (603)
T PLN02718 482 ACTWAFGMNLFDLEEWRRQKLTSV-YHKYLQLGVKRPLWKAGSLP 525 (603)
T ss_pred ccccccceEEEeHHHHHhcChHHH-HHHHHHhccCccccCccccc
Confidence 12467999998 44444444 44565543344678998887
No 25
>PLN02870 Probable galacturonosyltransferase
Probab=69.82 E-value=10 Score=41.85 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=56.2
Q ss_pred ccchhHH-HHHHHHHHHHHHHHHcCCeEEEecccEeeecCCcccccc-CCCceEEEecCccCC---------------Cc
Q 043225 261 FGTKCFQ-RVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKA---------------TG 323 (473)
Q Consensus 261 ~gs~~f~-~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~---------------~~ 323 (473)
+..+.|. .+.-.|..+- +++..=-.||+.|.|||-.+|-.+++.. .++.-+.+..|+... ..
T Consensus 320 ~~~p~ylS~lny~Rl~LP-elLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~ 398 (533)
T PLN02870 320 ARSPKYISLLNHLRIYLP-ELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSH 398 (533)
T ss_pred cCCccccCHHHHHHHHHH-HHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhccccc
Confidence 3344443 3455555543 3444212799999999999998877753 222222233343110 00
Q ss_pred cC-----C-CCCCcCceEEEE-----eeChhHHHHHHHHHHH-Hh-cCCCCCchhHH
Q 043225 324 AI-----N-LPRRLNSGFYFA-----RSDSSTIAAMEKVVEH-AA-TSGLSEQPSFY 367 (473)
Q Consensus 324 ~~-----~-~~~~iNsGf~y~-----RsT~~Ti~f~e~w~~~-~~-~~~~~DQ~~fN 367 (473)
|. + ..-..|+|++++ |-..-|.+++ .|++. .. .-..+||.+++
T Consensus 399 p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~-~~l~~n~~~~l~l~DQdaLp 454 (533)
T PLN02870 399 PLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYH-SWLKENLKSNLTMWKLGTLP 454 (533)
T ss_pred chhhcccCcccceeeccchhccHHHHHHcChHHHHH-HHHHhhhhcCceeccccccc
Confidence 00 0 012467999988 5555555544 34432 22 23679999985
No 26
>PLN02742 Probable galacturonosyltransferase
Probab=66.97 E-value=1.1e+02 Score=34.07 Aligned_cols=101 Identities=15% Similarity=0.009 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecccEeeecCCcccccc-CCCceEEEecCcc------CC----Ccc-----CC-CCCC
Q 043225 268 RVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEY------KA----TGA-----IN-LPRR 330 (473)
Q Consensus 268 ~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~------~~----~~~-----~~-~~~~ 330 (473)
..+..|..+-. ++..=-.|++.|+|||..+|-.+++.. .++.-+.+..|+. .. ..| .+ ..-.
T Consensus 338 ~~~y~R~~lP~-llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~ 416 (534)
T PLN02742 338 MLNHLRFYIPE-IYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACG 416 (534)
T ss_pred HHHHHHHHHHH-HhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCccc
Confidence 34555655444 554323799999999999998777653 2222334444551 10 001 11 1124
Q ss_pred cCceEEEE-----eeChhHHHHHHHHHHHHhcCCCCCchhHHHHh
Q 043225 331 LNSGFYFA-----RSDSSTIAAMEKVVEHAATSGLSEQPSFYDTL 370 (473)
Q Consensus 331 iNsGf~y~-----RsT~~Ti~f~e~w~~~~~~~~~~DQ~~fN~vL 370 (473)
.|+|++.+ |-..-|. .++.|.+.-.+...+||.+++..+
T Consensus 417 fNsGV~ViDL~~WRe~nITe-~~~~w~e~n~~~~l~d~gaLpp~L 460 (534)
T PLN02742 417 WAFGMNVFDLVAWRKANVTA-IYHYWQEQNVDRTLWKLGTLPPGL 460 (534)
T ss_pred cccCcEEEeHHHHHhhcHHH-HHHHHHHhccccccccccccchHH
Confidence 78999998 5555555 666787655556788998888653
No 27
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=64.36 E-value=31 Score=34.98 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=65.2
Q ss_pred HHHHHHHhcCC--CeEEEEEeChhHHHHHHHHHHHHHhc---CCC-cEEEEEeCHHHHHHHH---HCCCCeeeCCCCCCC
Q 043225 183 ESLLSVIADKN--KTVVLAVAGYSYREMLMSWVCRLRRL---RVT-NFVVCALDYETYQFSI---LQGLPVFNDPSAPSN 253 (473)
Q Consensus 183 ~~LL~~vA~~d--~tVIvt~~N~~y~d~l~Nwl~slr~l---gv~-n~lVvAlD~~a~~~c~---~~Gip~f~~~~~~~~ 253 (473)
.++|++...+. +.=|+.++-..|..+++.|++|.++. |.+ +|.|++-+........ .+.+.|+...
T Consensus 22 ~~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~----- 96 (271)
T cd02515 22 PDVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIA----- 96 (271)
T ss_pred HHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccccCCCceeEEEEec-----
Confidence 34455544322 33455667777999999999999875 444 6777776665433221 1122333321
Q ss_pred CCCCCccccchhHHHHHHHHHHHHHHHHH--c--CCe-EEEecccEeeecCCc
Q 043225 254 ISFNDCHFGTKCFQRVTKAKSRMVLQILK--L--GYN-VLLSDVDVYWFKNPL 301 (473)
Q Consensus 254 ~s~~~~~~gs~~f~~~~~~K~~vl~~lL~--l--Gy~-VL~sDvDVVWlrdP~ 301 (473)
....|+.++.+|..++....+ . -+| +.+.|+|.++.++--
T Consensus 97 --------~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 97 --------EESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred --------cccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 224566777788888877765 2 345 667899999877643
No 28
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=62.92 E-value=76 Score=25.87 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEeC--HHHHHHHHHC-CCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHc
Q 043225 207 EMLMSWVCRLRRLRVTNFVVCALD--YETYQFSILQ-GLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKL 283 (473)
Q Consensus 207 d~l~Nwl~slr~lgv~n~lVvAlD--~~a~~~c~~~-Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~l 283 (473)
+++.-||.+.+++|+++++|+--+ +.+.+.|.+. ++.++..+. .+.. ...++.+.+ .+... . .
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~----------~~~~-~~~~~~~~~-~~~~~-~-~ 70 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVGIIRWVD----------PYRD-ERRQRAWRN-ALIER-A-F 70 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcEEEEeCC----------Cccc-hHHHHHHHH-HHHHh-C-C
Confidence 678899999999999998887552 5577777653 444443321 1111 111122111 12221 1 2
Q ss_pred CC-eEEEecccEeeecCCc
Q 043225 284 GY-NVLLSDVDVYWFKNPL 301 (473)
Q Consensus 284 Gy-~VL~sDvDVVWlrdP~ 301 (473)
+. -+++.|+|=++.-+|-
T Consensus 71 ~~dWvl~~D~DEfl~~~~~ 89 (97)
T PF13704_consen 71 DADWVLFLDADEFLVPPPG 89 (97)
T ss_pred CCCEEEEEeeeEEEecCCC
Confidence 44 4899999988876663
No 29
>PLN02769 Probable galacturonosyltransferase
Probab=62.72 E-value=1.6e+02 Score=33.37 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHcCCeEEEecccEeeecCCccccc
Q 043225 269 VTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLY 305 (473)
Q Consensus 269 ~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~ 305 (473)
++..|+. +-+++..=-.||+.|.|||-.+|-.+++.
T Consensus 438 ~nh~Rfy-IPELLP~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 438 FSHSHFL-LPEIFKKLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred HHHHHHH-HHHHhhhcCeEEEEeCCEEecCcHHHHhc
Confidence 4455554 44455531279999999999999887765
No 30
>PLN02867 Probable galacturonosyltransferase
Probab=61.77 E-value=54 Score=36.38 Aligned_cols=108 Identities=11% Similarity=-0.006 Sum_probs=58.8
Q ss_pred cccchhHHH-HHHHHHHHHHHHHHcCCeEEEecccEeeecCCccccccC-CCceEEEecCccCC---------------C
Q 043225 260 HFGTKCFQR-VTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTY-GPFVLAAQSDEYKA---------------T 322 (473)
Q Consensus 260 ~~gs~~f~~-~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrdP~~~l~~~-~daDi~~qsD~~~~---------------~ 322 (473)
.+..+.|.. ++..|..+- +++..=-.||+.|.|||-.+|--+++... ++.-+.+..|.+.. .
T Consensus 321 ~~~~pkylS~lnYlRflIP-eLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfs 399 (535)
T PLN02867 321 EALSPSCLSLLNHLRIYIP-ELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFS 399 (535)
T ss_pred hhcChhhhhHHHHHHHHHH-HHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhcccc
Confidence 345566654 455555444 45552126999999999999987776531 22222333332100 0
Q ss_pred cc-----CC-CCCCcCceEEEE-----eeChhHHHHHHHHHHHHhc--CCCCCchhHHHH
Q 043225 323 GA-----IN-LPRRLNSGFYFA-----RSDSSTIAAMEKVVEHAAT--SGLSEQPSFYDT 369 (473)
Q Consensus 323 ~~-----~~-~~~~iNsGf~y~-----RsT~~Ti~f~e~w~~~~~~--~~~~DQ~~fN~v 369 (473)
.| .+ .....|+|++.+ |-..-|.++ ..|++.... ...+||.++|..
T Consensus 400 np~i~~~~~p~~cYFNSGVmLINL~~WRe~nITek~-~~~Le~n~~~~~~l~dqd~LN~~ 458 (535)
T PLN02867 400 HPLISSNLDQERCAWLYGMNVFDLKAWRRTNITEAY-HKWLKLSLNSGLQLWQPGALPPA 458 (535)
T ss_pred chhhhccCCCCCcceecceeeeeHHHHHHhcHHHHH-HHHHHhchhcccccccccccchH
Confidence 01 00 112478999998 444444433 344443222 367899999873
No 31
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=47.81 E-value=23 Score=32.57 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=51.4
Q ss_pred cccccccccccccccCCCCCChhhHHHHHHHHhcCCCeEEEEEeChhHHHHHHHHHHHHHhcCCC-cEEEEEeCHHHHH
Q 043225 158 LHRRLDCCLADQLKALPPLDFPFSLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVT-NFVVCALDYETYQ 235 (473)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~L~~LL~~vA~~d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~-n~lVvAlD~~a~~ 235 (473)
-..+.||+--+.+|-....+-+..+-.|-.......+.|+||.++....+-+..++.++++..-+ .+|+--++-...+
T Consensus 25 iGkkF~C~~l~~Le~l~l~~~~~~~v~l~~~~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~ 103 (142)
T PF07801_consen 25 IGKKFDCSLLETLEDLKLLDNPGPFVDLSSSSKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQ 103 (142)
T ss_pred cCceecchHHHHHhhhhhccCCCcceecccccccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHH
Confidence 34567777766666554444443332332222234588999999999999999999999998765 5777766654433
No 32
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.14 E-value=1.9e+02 Score=25.16 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHHHHHHHhc-CCCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEe---CHHHHHHHHHCCCCeeeC
Q 043225 182 LESLLSVIAD-KNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCAL---DYETYQFSILQGLPVFND 247 (473)
Q Consensus 182 L~~LL~~vA~-~d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAl---D~~a~~~c~~~Gip~f~~ 247 (473)
.+++++.+.. +-..|.++.++..+...+..++..+++.+.++..|++- =++..+.+.+.|+.-+..
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC
Confidence 4555555442 34678888888889999999999999988765443333 334466777899865544
No 33
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=43.04 E-value=1e+02 Score=26.54 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=44.0
Q ss_pred CCCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeCHHHHHHHHHCCCCeeeCCC
Q 043225 192 KNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPS 249 (473)
Q Consensus 192 ~d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD~~a~~~c~~~Gip~f~~~~ 249 (473)
..+.+++.+..++.-.-+..-++.+++.|++ ++.++-+.+..+.|.+.|.+++..|.
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~-iI~IT~~~~l~~~~~~~~~~~~~~p~ 98 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAK-IVAITSGGKLLEMAREHGVPVIIIPK 98 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHcCCcEEECCC
Confidence 3567888888888777666677778888874 66666688888888888999998775
No 34
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=38.88 E-value=74 Score=33.31 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=58.9
Q ss_pred HHHHHHHhcC-CCeE-EEEEeChhHHHHHHHHHHHHHhc---CCC-cEEEEEeCHHHHHHHHH---CCCCeeeCCCCCCC
Q 043225 183 ESLLSVIADK-NKTV-VLAVAGYSYREMLMSWVCRLRRL---RVT-NFVVCALDYETYQFSIL---QGLPVFNDPSAPSN 253 (473)
Q Consensus 183 ~~LL~~vA~~-d~tV-Ivt~~N~~y~d~l~Nwl~slr~l---gv~-n~lVvAlD~~a~~~c~~---~Gip~f~~~~~~~~ 253 (473)
.++|++.-.+ +=|| +++++-..|..++.-|++|.++. |.+ +|.|++-+.+..-.+.. +.+.++..
T Consensus 87 ~~~l~~~y~~~n~tIGL~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~l~~~r~~~V~~v------ 160 (337)
T PF03414_consen 87 RDILNEYYKQQNITIGLTVFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIELGPGRRLKVFEV------ 160 (337)
T ss_dssp HHHHHHHHHHCT-EEEEEEEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS------TTEEEEEEE-------
T ss_pred HHHHHHHHHhcCceEEEEEEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccccCCCceeEEEEe------
Confidence 3445543322 3333 44556677999999999999874 554 67777766654333221 11222221
Q ss_pred CCCCCccccchhHHHHHHHHHHHHHHHHH----cCCe-EEEecccEeeecCCc
Q 043225 254 ISFNDCHFGTKCFQRVTKAKSRMVLQILK----LGYN-VLLSDVDVYWFKNPL 301 (473)
Q Consensus 254 ~s~~~~~~gs~~f~~~~~~K~~vl~~lL~----lGy~-VL~sDvDVVWlrdP~ 301 (473)
.....|+.++..|..++...++ ...| +++.|+|.++ +|++
T Consensus 161 -------~~~~~Wqd~sm~Rm~~i~~~i~~~~~~EvDYLFc~dvd~~F-~~~v 205 (337)
T PF03414_consen 161 -------QEEKRWQDISMMRMEMISEHIEQHIQHEVDYLFCMDVDMVF-QDHV 205 (337)
T ss_dssp -------SGGSSHHHHHHHHHHHHHHHHHHCHHHH-SEEEEEESSEEE--S-B
T ss_pred -------cccCCCccchhHHHHHHHHHHHHHHhhcCCEEEEEecceEE-eccc
Confidence 1234578888888888887654 3355 6678999995 6664
No 35
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.80 E-value=1.6e+02 Score=25.70 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=41.6
Q ss_pred CCCeEEEEEeChhHH---HHHHHHHHHHHhcCCCcEEE------EEeCHHHHHHHHHCCCCeeeCCC
Q 043225 192 KNKTVVLAVAGYSYR---EMLMSWVCRLRRLRVTNFVV------CALDYETYQFSILQGLPVFNDPS 249 (473)
Q Consensus 192 ~d~tVIvt~~N~~y~---d~l~Nwl~slr~lgv~n~lV------vAlD~~a~~~c~~~Gip~f~~~~ 249 (473)
+.+.+++|+...-.. ..+..|+..+.+.|+.-+.| -.+.+++.+.|.+.++|.+..|.
T Consensus 41 ~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 41 RGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred CCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 468888876443222 35788888888766543333 15789999999999999999874
No 36
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.49 E-value=2.8e+02 Score=25.58 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHHH-hcCCCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEe---CHHHHHHHHHCCCCeeeCC
Q 043225 183 ESLLSVI-ADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCAL---DYETYQFSILQGLPVFNDP 248 (473)
Q Consensus 183 ~~LL~~v-A~~d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAl---D~~a~~~c~~~Gip~f~~~ 248 (473)
+++++.+ +..-..|.|+..+.++..++.--++-+++.|+++++|++- -.+-++.+++.|+.-+..|
T Consensus 53 ~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~p 122 (143)
T COG2185 53 EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGP 122 (143)
T ss_pred HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeCC
Confidence 5555554 3233778899999999999999999999999998885542 2233667888887655444
No 37
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=28.30 E-value=2.5e+02 Score=24.76 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCHHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHcCCeE
Q 043225 208 MLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNV 287 (473)
Q Consensus 208 ~l~Nwl~slr~lgv~n~lVvAlD~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~lGy~V 287 (473)
|+..-+..+++.++++++|++-+++.++.+...++.++..+.. ..|. +...+..+ .-+...-.|
T Consensus 26 li~~~l~~l~~~~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~---------~~G~-----~~sl~~a~--~~~~~~~~v 89 (160)
T PF12804_consen 26 LIERVLEALREAGVDDIVVVTGEEEIYEYLERYGIKVVVDPEP---------GQGP-----LASLLAAL--SQLPSSEPV 89 (160)
T ss_dssp HHHHHHHHHHHHTESEEEEEESTHHHHHHHTTTTSEEEE-STS---------SCSH-----HHHHHHHH--HTSTTSSEE
T ss_pred HHHHHHHHhhccCCceEEEecChHHHHHHHhccCceEEEeccc---------cCCh-----HHHHHHHH--HhcccCCCc
Confidence 5666667788888999999999988888888888888776531 1111 11111111 112145679
Q ss_pred EEecccEeeec
Q 043225 288 LLSDVDVYWFK 298 (473)
Q Consensus 288 L~sDvDVVWlr 298 (473)
+++-+|+.|+.
T Consensus 90 lv~~~D~p~~~ 100 (160)
T PF12804_consen 90 LVLPCDQPFLS 100 (160)
T ss_dssp EEEETTETTS-
T ss_pred EEEeCCccccC
Confidence 99999998743
No 38
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=27.43 E-value=4.5e+02 Score=25.89 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeCHHHHH-----HHHHCCCCeeeCCCCCCCCCCCCccccchhHH
Q 043225 193 NKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQ-----FSILQGLPVFNDPSAPSNISFNDCHFGTKCFQ 267 (473)
Q Consensus 193 d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD~~a~~-----~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~ 267 (473)
+-+++...+...+.+-...+.+-++++|++.++..+++.+-.. .|.+.|+-++.. -|+..
T Consensus 58 gipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~P------------LW~~~--- 122 (223)
T TIGR00290 58 GIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAP------------LWHRD--- 122 (223)
T ss_pred CCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEecc------------ccCCC---
Confidence 3444433333334455555656677789999999999865432 477788866541 24433
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecccE
Q 043225 268 RVTKAKSRMVLQILKLGYNVLLSDVDV 294 (473)
Q Consensus 268 ~~~~~K~~vl~~lL~lGy~VL~sDvDV 294 (473)
...++.++++.|+.++.+=++.
T Consensus 123 -----~~~ll~e~i~~G~~aiIv~v~a 144 (223)
T TIGR00290 123 -----PEKLMEEFVEEKFEARIIAVAA 144 (223)
T ss_pred -----HHHHHHHHHHcCCeEEEEEEec
Confidence 3468999999999999865554
No 39
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=27.32 E-value=1.6e+02 Score=27.16 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=33.2
Q ss_pred eCHHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHH-HHHHHHHHHcCCeEEEec
Q 043225 229 LDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAK-SRMVLQILKLGYNVLLSD 291 (473)
Q Consensus 229 lD~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K-~~vl~~lL~lGy~VL~sD 291 (473)
.+++..+.+.+.|++|+-++.. + +..+..++++|.+-+++|
T Consensus 137 ~~~~~v~~~~~~g~~v~~wtvn----------------------~~~~~~~~l~~~Gvd~i~TD 178 (179)
T cd08555 137 KDTELIASANKLGLLSRIWTVN----------------------DNNEIINKFLNLGVDGLITD 178 (179)
T ss_pred cCHHHHHHHHHCCCEEEEEeeC----------------------ChHHHHHHHHHcCCCEEeCC
Confidence 5788888999999998876531 2 677788999999999987
No 40
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.52 E-value=5.5e+02 Score=24.20 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=41.6
Q ss_pred ChhhHHHHHHHHhcCCC-eEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeC--HHHHHHHHHCCCCeeeCC
Q 043225 178 FPFSLESLLSVIADKNK-TVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALD--YETYQFSILQGLPVFNDP 248 (473)
Q Consensus 178 ~~~~L~~LL~~vA~~d~-tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD--~~a~~~c~~~Gip~f~~~ 248 (473)
|-.++..-+.+++.+.+ .+++..++..- +-...++..+..-+++-+++.+.| ....+.+...|+|++...
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~i~ 85 (270)
T cd06296 13 WASEVLRGVEEAAAAAGYDVVLSESGRRT-SPERQWVERLSARRTDGVILVTPELTSAQRAALRRTGIPFVVVD 85 (270)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEecCCCch-HHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHhcCCCCEEEEe
Confidence 44455555555554333 34444444222 334456677777788888877664 455677778899987643
No 41
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=24.83 E-value=1.2e+02 Score=25.60 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.8
Q ss_pred EEEEEeCHHHHHHHH-HCCCCeeeC
Q 043225 224 FVVCALDYETYQFSI-LQGLPVFND 247 (473)
Q Consensus 224 ~lVvAlD~~a~~~c~-~~Gip~f~~ 247 (473)
++|++-|.+..+.+. ..|+|+++.
T Consensus 67 ~~VaT~D~~Lr~~lr~~~GvPvi~l 91 (101)
T PF04900_consen 67 YIVATQDKELRRRLRKIPGVPVIYL 91 (101)
T ss_pred EEEEecCHHHHHHHhcCCCCCEEEE
Confidence 999999999999998 789998775
No 42
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.27 E-value=4.4e+02 Score=26.44 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeC-------HHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHH
Q 043225 208 MLMSWVCRLRRLRVTNFVVCALD-------YETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQI 280 (473)
Q Consensus 208 ~l~Nwl~slr~lgv~n~lVvAlD-------~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~l 280 (473)
.+.+....+++.| .++++++.| ++...+++..|+|++.....+ .+ .. .....+...
T Consensus 88 t~akLA~~l~~~g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~-----------dp--~~---~~~~~l~~~ 150 (272)
T TIGR00064 88 TIAKLANKLKKQG-KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGA-----------DP--AA---VAFDAIQKA 150 (272)
T ss_pred HHHHHHHHHHhcC-CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCC-----------CH--HH---HHHHHHHHH
Confidence 4445444555544 468899999 444556778888877543210 01 01 112234555
Q ss_pred HHcCCeEEEeccc
Q 043225 281 LKLGYNVLLSDVD 293 (473)
Q Consensus 281 L~lGy~VL~sDvD 293 (473)
...||++++.|+=
T Consensus 151 ~~~~~D~ViIDT~ 163 (272)
T TIGR00064 151 KARNIDVVLIDTA 163 (272)
T ss_pred HHCCCCEEEEeCC
Confidence 6789999998874
No 43
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=23.02 E-value=5e+02 Score=25.49 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=54.0
Q ss_pred CCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeCHHHHH-----HHHHCCCCeeeCCCCCCCCCCCCccccchhHH
Q 043225 193 NKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQ-----FSILQGLPVFNDPSAPSNISFNDCHFGTKCFQ 267 (473)
Q Consensus 193 d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD~~a~~-----~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~ 267 (473)
+-.++...+...+.+-+...++.+++.|++.++..+++.+-.+ .|.+.|+-++. | -|+...
T Consensus 58 giPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl~~~~-P-----------LW~~d~-- 123 (222)
T TIGR00289 58 GIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIESNYQKSRIDKVCRELGLKSIA-P-----------LWHADP-- 123 (222)
T ss_pred CCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCCEEec-c-----------ccCCCH--
Confidence 4455555555556677777778888889999999999965332 47778876543 1 344331
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEecccE
Q 043225 268 RVTKAKSRMVLQILKLGYNVLLSDVDV 294 (473)
Q Consensus 268 ~~~~~K~~vl~~lL~lGy~VL~sDvDV 294 (473)
..++ ++++.|+.++.+=++.
T Consensus 124 ------~~l~-e~i~~Gf~aiIv~v~~ 143 (222)
T TIGR00289 124 ------EKLM-YEVAEKFEVIIVSVSA 143 (222)
T ss_pred ------HHHH-HHHHcCCeEEEEEEcc
Confidence 1233 6789999998865554
No 44
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.86 E-value=6.4e+02 Score=23.67 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=51.6
Q ss_pred hHHHHHHHHhcCCCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeC--HHHHHHHHHCCCCeeeCCCCCCCCCCCC
Q 043225 181 SLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALD--YETYQFSILQGLPVFNDPSAPSNISFND 258 (473)
Q Consensus 181 ~L~~LL~~vA~~d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD--~~a~~~c~~~Gip~f~~~~~~~~~s~~~ 258 (473)
++..-+.+++.+.+.-++.+....-.+-....++.+...+++-+|+...+ ....+.+.+.|+|++.......... -
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~~~~~~~~~--~ 93 (265)
T cd06299 16 SLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFVDREITGSP--I 93 (265)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHHHHHhCCCCEEEEecccCCCC--C
Confidence 34444444444444433333222112223344556667788888887653 3456778889999865433211110 0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHcCC-eEEE
Q 043225 259 CHFGTKCFQRVTKAKSRMVLQILKLGY-NVLL 289 (473)
Q Consensus 259 ~~~gs~~f~~~~~~K~~vl~~lL~lGy-~VL~ 289 (473)
...++..+.. ....+..+++.|+ ++.+
T Consensus 94 ~~v~~d~~~~----~~~~~~~l~~~g~~~I~~ 121 (265)
T cd06299 94 PFVTSDPQPG----MTEAVSLLVALGHKKIGY 121 (265)
T ss_pred CEEEECcHHH----HHHHHHHHHHcCCCcEEE
Confidence 1123332321 2245567778886 4444
No 45
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.47 E-value=5.6e+02 Score=22.85 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHHHhcC-CCeEEEEEeChhHHHHHHHHHHHHHhcCCCcE-EEEE--eCHHHHHHHHHCCCCeeeCC
Q 043225 182 LESLLSVIADK-NKTVVLAVAGYSYREMLMSWVCRLRRLRVTNF-VVCA--LDYETYQFSILQGLPVFNDP 248 (473)
Q Consensus 182 L~~LL~~vA~~-d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~-lVvA--lD~~a~~~c~~~Gip~f~~~ 248 (473)
.++.++.+... -..|.++..+..+.+.+.--+..+++.|.+.+ +++. .-++-.+.+++.|+.-+..+
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGP 112 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECC
Confidence 45666655432 35677788888899998888888988887553 4444 34455667888998755543
No 46
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=22.08 E-value=1.2e+02 Score=25.79 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHcCCeEEEecccEeeecC
Q 043225 269 VTKAKSRMVLQILKLGYNVLLSDVDVYWFKN 299 (473)
Q Consensus 269 ~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrd 299 (473)
|..+|-.+-...--.|+.+||-|.|+||-.+
T Consensus 10 ~~al~~~lryk~~va~hgflfddg~~vw~e~ 40 (111)
T PF02484_consen 10 MEALRDALRYKNEVARHGFLFDDGDIVWSED 40 (111)
T ss_pred HHHHHHHHHHHhhccccceEecCCcEEEecC
Confidence 4445555555555679999999999999875
No 47
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=21.61 E-value=7e+02 Score=23.69 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCH----HHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHcC
Q 043225 209 LMSWVCRLRRLRVTNFVVCALDY----ETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLG 284 (473)
Q Consensus 209 l~Nwl~slr~lgv~n~lVvAlD~----~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~lG 284 (473)
....+..+..-+++-+++...|. +.++.+.+ |+|++......... ....+-..+....+..=...+.+.+..|
T Consensus 44 ~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~~~~~~~~--~~~~~V~~D~~~~g~~a~~~l~~~~~~g 120 (271)
T cd06314 44 QLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITTDSDAPDS--GRYVYIGTDNYAAGRTAGEIMKKALPGG 120 (271)
T ss_pred HHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEecCCCCcc--ceeEEEccChHHHHHHHHHHHHHHcCCC
Confidence 34455556666899888888774 34455556 99987754321110 0112222233445544344444444457
Q ss_pred CeEEE
Q 043225 285 YNVLL 289 (473)
Q Consensus 285 y~VL~ 289 (473)
..+++
T Consensus 121 ~~~~~ 125 (271)
T cd06314 121 GKVAI 125 (271)
T ss_pred CEEEE
Confidence 76543
No 48
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=20.55 E-value=5.3e+02 Score=21.83 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeCHHHHHHHHHCCCCeeeCC
Q 043225 198 LAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDP 248 (473)
Q Consensus 198 vt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD~~a~~~c~~~Gip~f~~~ 248 (473)
|-++|.. ..++.+|+..+++.|.+ +.|++++.+.-+.....|+.++..+
T Consensus 3 l~i~~~~-~~~~~~~~~~L~~~g~~-V~ii~~~~~~~~~~~~~~i~~~~~~ 51 (139)
T PF13477_consen 3 LLIGNTP-STFIYNLAKELKKRGYD-VHIITPRNDYEKYEIIEGIKVIRLP 51 (139)
T ss_pred EEEecCc-HHHHHHHHHHHHHCCCE-EEEEEcCCCchhhhHhCCeEEEEec
Confidence 4444444 34688999999988887 5555555555344446777776654
No 49
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=20.32 E-value=1.8e+02 Score=26.58 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.8
Q ss_pred cEEEEEeCHHHHHHHHHCCCCeeeCC
Q 043225 223 NFVVCALDYETYQFSILQGLPVFNDP 248 (473)
Q Consensus 223 n~lVvAlD~~a~~~c~~~Gip~f~~~ 248 (473)
+++|++-|.+..+.+.+.|+|+....
T Consensus 99 ~~iVaTnD~eLk~rlr~~GIPvi~lr 124 (136)
T COG1412 99 RYIVATNDKELKRRLRENGIPVITLR 124 (136)
T ss_pred CEEEEeCCHHHHHHHHHcCCCEEEEe
Confidence 89999999999999999999997754
Done!