Query 043225
Match_columns 473
No_of_seqs 160 out of 417
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 98.0 5.4E-05 1.9E-09 76.6 13.0 160 195-371 5-172 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.8 8.2E-05 2.8E-09 73.1 10.5 160 198-371 9-173 (263)
3 1g9r_A Glycosyl transferase; a 97.1 0.0012 4.2E-08 65.6 8.3 171 197-371 3-197 (311)
4 3tzt_A Glycosyl transferase fa 96.8 0.0098 3.4E-07 58.3 12.0 170 195-371 6-202 (276)
5 2c0n_A A197; thermophil protei 44.9 48 0.0016 30.9 6.9 67 233-316 17-88 (203)
6 1o7q_A N-acetyllactosaminide a 37.8 35 0.0012 33.6 5.0 96 194-300 49-155 (289)
7 3e61_A Putative transcriptiona 37.5 1.1E+02 0.0039 27.7 8.6 97 181-286 25-123 (277)
8 1fo8_A Alpha-1,3-mannosyl-glyc 31.3 1.9E+02 0.0066 28.7 9.5 108 195-306 5-122 (343)
9 3tb6_A Arabinose metabolism tr 30.7 3E+02 0.01 24.8 10.4 102 178-286 29-138 (298)
10 3o74_A Fructose transport syst 29.0 1.8E+02 0.0062 26.0 8.3 98 181-286 19-121 (272)
11 3jy6_A Transcriptional regulat 26.3 3.6E+02 0.012 24.3 10.6 99 181-286 24-124 (276)
12 3ioh_A Histo-blood group ABO s 26.3 72 0.0024 31.5 5.0 107 183-300 46-164 (298)
13 1sn9_A BBAT, tetrameric beta-B 23.3 32 0.0011 21.0 1.2 17 174-190 5-21 (26)
14 3uug_A Multiple sugar-binding 23.1 4.5E+02 0.015 24.2 10.7 67 181-248 20-91 (330)
15 3oam_A 3-deoxy-manno-octuloson 20.9 2.5E+02 0.0086 25.8 7.7 40 208-247 29-68 (252)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.97 E-value=5.4e-05 Score=76.64 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=98.6
Q ss_pred eEEEEEeChhHHHHHHHHHHHHHhcCCC-cEEEEEeC---HHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHH
Q 043225 195 TVVLAVAGYSYREMLMSWVCRLRRLRVT-NFVVCALD---YETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVT 270 (473)
Q Consensus 195 tVIvt~~N~~y~d~l~Nwl~slr~lgv~-n~lVvAlD---~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~ 270 (473)
.-|+..+|..|+.-+.-.+.|+++.+-+ .++|+..| ++..+.+.+.+..+...+....... .............+
T Consensus 5 a~vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~-~~~~~~~~~~~~~t 83 (333)
T 1ll2_A 5 AFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDS-AHLTLMKRPELGVT 83 (333)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTST-THHHHHHCGGGHHH
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcch-hhcccccccchHHH
Confidence 3445557999999999999999988754 56555553 5666777777765554332111100 00000001112456
Q ss_pred HHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHHHH
Q 043225 271 KAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAME 349 (473)
Q Consensus 271 ~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f~e 349 (473)
+.|..+.. + ..| .|++.|+|++.++|+-+++... .+.+..|. ..+..+|+|+|.++++.. .++
T Consensus 84 ~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~---~~aAv~d~-------~~~~~fNsGvmlin~~~~---~~~ 147 (333)
T 1ll2_A 84 LTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE---ELSAAPDP-------GWPDCFNSGVFVYQPSVE---TYN 147 (333)
T ss_dssp HHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC---SSEEEECS-------SSTTSEEEEEEEECCCHH---HHH
T ss_pred HHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC---ceeEEecC-------CCCcceeeeEEEEeCCHH---HHH
Confidence 67766554 2 345 6999999999999998887542 23333332 124579999999999743 344
Q ss_pred HHHHHHhc---CCCCCchhHHHHhh
Q 043225 350 KVVEHAAT---SGLSEQPSFYDTLC 371 (473)
Q Consensus 350 ~w~~~~~~---~~~~DQ~~fN~vL~ 371 (473)
.+++.+.. -...||.++|.++.
T Consensus 148 ~l~~~~~~~~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 148 QLLHVASEQGSFDGGDQGLLNTFFN 172 (333)
T ss_dssp HHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 44444322 24579999998775
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.80 E-value=8.2e-05 Score=73.07 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=96.0
Q ss_pred EEEeChhHHHHHHHHHHHHHhcCCC-cEEEEE---eCHHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHH
Q 043225 198 LAVAGYSYREMLMSWVCRLRRLRVT-NFVVCA---LDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAK 273 (473)
Q Consensus 198 vt~~N~~y~d~l~Nwl~slr~lgv~-n~lVvA---lD~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K 273 (473)
-..+|..|+.-+.-.+.|+++.+-+ .++|+. ++++..+.+++.|..+...+.....-.......+.+.+ ..++.|
T Consensus 9 Tl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~-~~~~~k 87 (263)
T 3u2u_A 9 TLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL-GVTLTK 87 (263)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG-GGGGGG
T ss_pred EEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch-hHHhHH
Confidence 3346899999999999999998765 455554 34577777888776665543211100000000111112 234455
Q ss_pred HHHHHHHHHcCC-eEEEecccEeeecCCccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHHHHHHH
Q 043225 274 SRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVV 352 (473)
Q Consensus 274 ~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f~e~w~ 352 (473)
..+-. ++ .| .|++.|+|++.++|.-++|... .+.+..|. ..+..+|+|++.+.++..+-+-+-+..
T Consensus 88 l~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~---~~aA~~d~-------~~~~~fNsGv~li~p~~~~~~~l~~~~ 154 (263)
T 3u2u_A 88 LHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE---ELSAAPDP-------GWPDCFNSGVFVYQPSVETYNQLLHLA 154 (263)
T ss_dssp GGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC---SSEEEECT-------TSTTSEEEEEEEECCCHHHHHHHHHHH
T ss_pred HHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC---cceEeccC-------CCCccccCeEEEEcccHHHHHHHHHHH
Confidence 54443 22 46 5999999999999988777542 24444442 124578999999998754333332222
Q ss_pred HHHhcCCCCCchhHHHHhh
Q 043225 353 EHAATSGLSEQPSFYDTLC 371 (473)
Q Consensus 353 ~~~~~~~~~DQ~~fN~vL~ 371 (473)
.....-...||.++|.++.
T Consensus 155 ~~~~~~~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 155 SEQGSFDGGDQGILNTFFS 173 (263)
T ss_dssp HHHCCTTSSHHHHHHHHTT
T ss_pred HhcCCCCcccHHHHHHHhc
Confidence 2222234579999999885
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=97.05 E-value=0.0012 Score=65.61 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=92.6
Q ss_pred EEEEeChhHHHHHHHHHHHH-HhcC-CC-cEEEEEeC--HHHHHHHHHC----CCCeeeCCCCCCCCCCCCccccchhHH
Q 043225 197 VLAVAGYSYREMLMSWVCRL-RRLR-VT-NFVVCALD--YETYQFSILQ----GLPVFNDPSAPSNISFNDCHFGTKCFQ 267 (473)
Q Consensus 197 Ivt~~N~~y~d~l~Nwl~sl-r~lg-v~-n~lVvAlD--~~a~~~c~~~----Gip~f~~~~~~~~~s~~~~~~gs~~f~ 267 (473)
|+..+|..|+..+...+.|+ .+.. .+ .+.|++.+ ++..+.+.+. |..+.........+. ...-....+.
T Consensus 3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~s 80 (311)
T 1g9r_A 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFA--GFPLNIRHIS 80 (311)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGT--TSCCCCTTCC
T ss_pred EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHh--cCccccccCC
Confidence 56678999999999999999 4432 22 45566654 6666666543 443322111011110 0000001111
Q ss_pred HHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCcccccc-CCCceEEEecCccCCCcc-------C-CCCCCcCceEEE
Q 043225 268 RVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKATGA-------I-NLPRRLNSGFYF 337 (473)
Q Consensus 268 ~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~~~~-------~-~~~~~iNsGf~y 337 (473)
..+..|..+ -.+|. .+ .|++.|+|++.++|.-+++.. .++.-+.+..|.+....+ . ......|+|+|.
T Consensus 81 ~~~y~Rl~l-~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~l 158 (311)
T 1g9r_A 81 ITTYARLKL-GEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLL 158 (311)
T ss_dssp GGGGGGGGH-HHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEE
T ss_pred HHHHHHHHH-HHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeee
Confidence 223344433 34443 45 599999999999999877753 223345555565321000 0 123479999999
Q ss_pred EeeCh----hHHHHHHHHHHHHhc-CCCCCchhHHHHhh
Q 043225 338 ARSDS----STIAAMEKVVEHAAT-SGLSEQPSFYDTLC 371 (473)
Q Consensus 338 ~RsT~----~Ti~f~e~w~~~~~~-~~~~DQ~~fN~vL~ 371 (473)
+..+. ...+-+.+|++.... -...||..+|.++.
T Consensus 159 inl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 159 INLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp ECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHT
T ss_pred eeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHc
Confidence 97653 122223344433322 24569999998775
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.78 E-value=0.0098 Score=58.26 Aligned_cols=170 Identities=13% Similarity=0.031 Sum_probs=85.1
Q ss_pred eEEEEEeChhHHHHHHHHHHHHHhcCC-Cc--EEEEEeC--HHHHHHHHH----CCCCe--eeCCCCCCCCCCCCccccc
Q 043225 195 TVVLAVAGYSYREMLMSWVCRLRRLRV-TN--FVVCALD--YETYQFSIL----QGLPV--FNDPSAPSNISFNDCHFGT 263 (473)
Q Consensus 195 tVIvt~~N~~y~d~l~Nwl~slr~lgv-~n--~lVvAlD--~~a~~~c~~----~Gip~--f~~~~~~~~~s~~~~~~gs 263 (473)
.=|+..+|..|...+...+.|+.+.+- .+ +.|+..+ ++..+.+.. .|..+ +..+. ..+ +... .+
T Consensus 6 i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~--~~~--~~~~-~~ 80 (276)
T 3tzt_A 6 DALLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD--DLF--SFAK-VT 80 (276)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC---------------
T ss_pred EEEEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH--HHH--hcCc-cc
Confidence 346788999999999999999877654 23 4444443 444444432 34332 22221 111 0000 11
Q ss_pred hhHHHHHHHHHHHHHHHHHcCC-eEEEecccEeeecCCcccccc-CCCceEEEecCccCCCcc-------CC-CCCCcCc
Q 043225 264 KCFQRVTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYT-YGPFVLAAQSDEYKATGA-------IN-LPRRLNS 333 (473)
Q Consensus 264 ~~f~~~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~-~~daDi~~qsD~~~~~~~-------~~-~~~~iNs 333 (473)
..|...+..|..+ -.++...+ .|++.|+|++.++|..+++.. .++.-+.+..|....... .. .....|+
T Consensus 81 ~~~s~~~~~rl~~-~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNs 159 (276)
T 3tzt_A 81 DRYPKEMYYRLLA-GEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNS 159 (276)
T ss_dssp ---CHHHHHHHTH-HHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEE
T ss_pred cccCHHHHHHHHH-HHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEe
Confidence 1233344444433 33554445 699999999999999877753 222335555565321100 00 1257999
Q ss_pred eEEEEeeCh-----hHHHHHHHHHHH-HhcCCCCCchhHHHHhh
Q 043225 334 GFYFARSDS-----STIAAMEKVVEH-AATSGLSEQPSFYDTLC 371 (473)
Q Consensus 334 Gf~y~RsT~-----~Ti~f~e~w~~~-~~~~~~~DQ~~fN~vL~ 371 (473)
|++.+..+. -+.+++ .|++. ...-...||+++|.++.
T Consensus 160 GV~linl~~~R~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~f~ 202 (276)
T 3tzt_A 160 GLLLINLKRAREEIDPDEIF-SFVEDNHMNLLLPDQDILNAMYG 202 (276)
T ss_dssp EEEEEEHHHHHHHCCHHHHH-HHHHHC--------CHHHHHHHG
T ss_pred eEEEEEHHHHHhhhHHHHHH-HHHHhccccccCCChhHHHHHHh
Confidence 999997653 222322 23221 11123679999998885
No 5
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=44.90 E-value=48 Score=30.90 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=43.1
Q ss_pred HHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHH-cCCe-EEEecccEeeecCCc---cccccC
Q 043225 233 TYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILK-LGYN-VLLSDVDVYWFKNPL---PSLYTY 307 (473)
Q Consensus 233 a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~-lGy~-VL~sDvDVVWlrdP~---~~l~~~ 307 (473)
....|.+.|+++.-... +. .++..|..++.+.|+ .||+ +++.|+|||=+.=+- +.+..
T Consensus 17 l~~~l~~~gi~~~l~~~--~S--------------lI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~- 79 (203)
T 2c0n_A 17 LIDFLVKNDIEYVILSR--RN--------------HVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFN- 79 (203)
T ss_dssp HHHHHHHTTCCEEEECC--CS--------------CHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHH-
T ss_pred HHHHHHhCCCeEEEEcc--cc--------------chHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHh-
Confidence 44567788998765432 11 367789999999887 6985 899999966444222 22222
Q ss_pred CCceEEEec
Q 043225 308 GPFVLAAQS 316 (473)
Q Consensus 308 ~daDi~~qs 316 (473)
.++|+++.+
T Consensus 80 ~g~DVV~Gs 88 (203)
T 2c0n_A 80 EGYDVVCGY 88 (203)
T ss_dssp HTCSEEEEE
T ss_pred CCCCEEEEE
Confidence 256777654
No 6
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=37.82 E-value=35 Score=33.56 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=59.4
Q ss_pred CeEEEEEeChhHH-HHHHHHHHHHHhc---CCC-cEEEEEeCHHHHHHHHHCCCCeeeCCCCCCC-CCCCCccccchhHH
Q 043225 194 KTVVLAVAGYSYR-EMLMSWVCRLRRL---RVT-NFVVCALDYETYQFSILQGLPVFNDPSAPSN-ISFNDCHFGTKCFQ 267 (473)
Q Consensus 194 ~tVIvt~~N~~y~-d~l~Nwl~slr~l---gv~-n~lVvAlD~~a~~~c~~~Gip~f~~~~~~~~-~s~~~~~~gs~~f~ 267 (473)
+.=++.++-..|. .++.-|++|.++. |.+ +|.|++-+.+. +|-+... +.. +.. -.......|+
T Consensus 49 tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~--------~p~v~l~--~~r~~~V-~~i~~~~~W~ 117 (289)
T 1o7q_A 49 TVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSR--------MPLIELG--PLRSFKV-FKIKPEKRWQ 117 (289)
T ss_dssp CEEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGG--------CCCCCCC--TTEEEEE-EECCCCSSHH
T ss_pred eEEEEEEEecccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhh--------CCccccC--CCCeEEE-EEeccccCCc
Confidence 3445566777888 8999999999875 555 67777777653 2221111 110 000 0012233488
Q ss_pred HHHHHHHHHHHHHHHc----CCe-EEEecccEeeecCC
Q 043225 268 RVTKAKSRMVLQILKL----GYN-VLLSDVDVYWFKNP 300 (473)
Q Consensus 268 ~~~~~K~~vl~~lL~l----Gy~-VL~sDvDVVWlrdP 300 (473)
.++..|..++....+. ..| +++.|+|+++..+-
T Consensus 118 d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~v 155 (289)
T 1o7q_A 118 DISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKF 155 (289)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCB
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccC
Confidence 8888888888886632 345 66789999987744
No 7
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=37.50 E-value=1.1e+02 Score=27.66 Aligned_cols=97 Identities=7% Similarity=-0.010 Sum_probs=53.7
Q ss_pred hHHHHHHHHhc-CCCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeCHHHHH-HHHHCCCCeeeCCCCCCCCCCCC
Q 043225 181 SLESLLSVIAD-KNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQ-FSILQGLPVFNDPSAPSNISFND 258 (473)
Q Consensus 181 ~L~~LL~~vA~-~d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD~~a~~-~c~~~Gip~f~~~~~~~~~s~~~ 258 (473)
.+.+-+++.+. .+-.+++..++.... -....+..+...+++-+|+...+++..+ .+.+.|+|++......... .
T Consensus 25 ~~~~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~l~~~~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~~~~~~---~ 100 (277)
T 3e61_A 25 LIARGVEDVALAHGYQVLIGNSDNDIK-KAQGYLATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFIDRINNEH---N 100 (277)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECTTCHH-HHHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC-------
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHH-HHHHHHHHHHhCCCCEEEEecCChHHHHHHHHcCCCCEEEEeccCCCC---C
Confidence 34444444443 344566655554322 2334556666778999999989999999 9999999987754322111 1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHcCCe
Q 043225 259 CHFGTKCFQRVTKAKSRMVLQILKLGYN 286 (473)
Q Consensus 259 ~~~gs~~f~~~~~~K~~vl~~lL~lGy~ 286 (473)
..+. +....+. .++..|+++|+.
T Consensus 101 -~V~~-D~~~~g~---~a~~~L~~~G~~ 123 (277)
T 3e61_A 101 -GIST-NHFKGGQ---LQAEVVRKGKGK 123 (277)
T ss_dssp -------HHHHHH---HHHHHHHHTTCC
T ss_pred -eEEe-chHHHHH---HHHHHHHHCCCC
Confidence 1222 2333332 355667788984
No 8
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=31.32 E-value=1.9e+02 Score=28.66 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=68.6
Q ss_pred eEEEEEeChhHHHHHHHHHHHHHhcC--C-CcEEEEEeCH---HHHHHHHHCCCCeee--CCCCCCCCCCCCccccchhH
Q 043225 195 TVVLAVAGYSYREMLMSWVCRLRRLR--V-TNFVVCALDY---ETYQFSILQGLPVFN--DPSAPSNISFNDCHFGTKCF 266 (473)
Q Consensus 195 tVIvt~~N~~y~d~l~Nwl~slr~lg--v-~n~lVvAlD~---~a~~~c~~~Gip~f~--~~~~~~~~s~~~~~~gs~~f 266 (473)
.|||.+.|.. + +..-|+++.+.. . +..||++-|. ++.+.++..+.++-. .+.. +.....+...|-++|
T Consensus 5 pViI~~yNRp--~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~-~~~~~~~~N~g~~~y 80 (343)
T 1fo8_A 5 PILVIACDRS--T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDL-SNIAVQPDHRKFQGY 80 (343)
T ss_dssp CEEEEESSCT--T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCC-CCCCCCTTCGGGHHH
T ss_pred cEEEEECCcH--H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCc-cccccchhhcCcccc
Confidence 5889999988 5 777888887663 3 3467777775 455555554433321 1211 111012334455667
Q ss_pred HHHHHHHHHHHHHHHH--cCCeEEEecccEeeecCCcccccc
Q 043225 267 QRVTKAKSRMVLQILK--LGYNVLLSDVDVYWFKNPLPSLYT 306 (473)
Q Consensus 267 ~~~~~~K~~vl~~lL~--lGy~VL~sDvDVVWlrdP~~~l~~ 306 (473)
.++...-...+..+.+ .+=-|++.|-|.+.-.|-+.++..
T Consensus 81 ~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 81 YKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 7776666666666666 555799999999998888877753
No 9
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=30.73 E-value=3e+02 Score=24.84 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHhcC-CCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeC-------HHHHHHHHHCCCCeeeCCC
Q 043225 178 FPFSLESLLSVIADK-NKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALD-------YETYQFSILQGLPVFNDPS 249 (473)
Q Consensus 178 ~~~~L~~LL~~vA~~-d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD-------~~a~~~c~~~Gip~f~~~~ 249 (473)
|-..+.+-+++.+.+ +-.+++..++... +-....+..+..-+++-+|+...| .+..+.+...|+|++....
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQGYSMLLTSTNNNP-DNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECTTCH-HHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCh-HHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEec
Confidence 333454555554433 4455555555332 223444556666788988888764 3677788889999876543
Q ss_pred CCCCCCCCCccccchhHHHHHHHHHHHHHHHHHcCCe
Q 043225 250 APSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYN 286 (473)
Q Consensus 250 ~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~lGy~ 286 (473)
...... ....+.. ....+. ..+..|+++|+.
T Consensus 108 ~~~~~~--~~~V~~d-~~~~~~---~a~~~L~~~G~~ 138 (298)
T 3tb6_A 108 SYAELA--APSFTLD-DVKGGM---MAAEHLLSLGHT 138 (298)
T ss_dssp CCTTCS--SCEEEEC-HHHHHH---HHHHHHHHTTCC
T ss_pred CcCCCC--CCEEEeC-cHHHHH---HHHHHHHHCCCC
Confidence 221111 0112333 333332 355667788985
No 10
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=29.00 E-value=1.8e+02 Score=26.05 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcC-CCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeC---HHHHHHHHHCCCCeeeCCCCCCCCCC
Q 043225 181 SLESLLSVIADK-NKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALD---YETYQFSILQGLPVFNDPSAPSNISF 256 (473)
Q Consensus 181 ~L~~LL~~vA~~-d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD---~~a~~~c~~~Gip~f~~~~~~~~~s~ 256 (473)
.+.+-+++.+.+ +-.+++..++... +-....+..+..-+++-+|+...+ .+..+.+.+.|+|++.........
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-- 95 (272)
T 3o74_A 19 RIAKQLEQGARARGYQLLIASSDDQP-DSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPA-- 95 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCH-HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTT--
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCcc--
Confidence 344444444433 4456665555432 222344556666688888887766 567778888999987654322111
Q ss_pred CCccc-cchhHHHHHHHHHHHHHHHHHcCCe
Q 043225 257 NDCHF-GTKCFQRVTKAKSRMVLQILKLGYN 286 (473)
Q Consensus 257 ~~~~~-gs~~f~~~~~~K~~vl~~lL~lGy~ 286 (473)
...+ +.. ....+. ..+..|+++|+.
T Consensus 96 -~~~~V~~d-~~~~~~---~a~~~L~~~G~~ 121 (272)
T 3o74_A 96 -HFCSVISD-DRDASR---QLAASLLSSAPR 121 (272)
T ss_dssp -TCEEEEEC-HHHHHH---HHHHHHHTTCCS
T ss_pred -ccCEEEEc-hHHHHH---HHHHHHHHCCCc
Confidence 1112 232 233332 245677888983
No 11
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.35 E-value=3.6e+02 Score=24.28 Aligned_cols=99 Identities=15% Similarity=0.037 Sum_probs=54.1
Q ss_pred hHHHHHHHHhcC-CCeEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeC-HHHHHHHHHCCCCeeeCCCCCCCCCCCC
Q 043225 181 SLESLLSVIADK-NKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALD-YETYQFSILQGLPVFNDPSAPSNISFND 258 (473)
Q Consensus 181 ~L~~LL~~vA~~-d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD-~~a~~~c~~~Gip~f~~~~~~~~~s~~~ 258 (473)
.+..-+++.+.+ +-.+++..++.... -....+..+..-+++-+|+...+ ++..+.+.+.|+|++.......... .
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~--~ 100 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIE-REKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDREMDACP--W 100 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHH-HHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCCCTTCS--S
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHH-HHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHCCCCEEEEecccCCCC--C
Confidence 444445554543 34555555554322 23345566667788888888776 5666777888999876543221111 0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHcCCe
Q 043225 259 CHFGTKCFQRVTKAKSRMVLQILKLGYN 286 (473)
Q Consensus 259 ~~~gs~~f~~~~~~K~~vl~~lL~lGy~ 286 (473)
...+. +....+. .++..|+++|+.
T Consensus 101 ~~V~~-D~~~~g~---~a~~~L~~~G~~ 124 (276)
T 3jy6_A 101 PQVVT-DNFEAAK---AATTAFRQQGYQ 124 (276)
T ss_dssp CEEEC-CHHHHHH---HHHHHHHTTTCC
T ss_pred CEEEE-ChHHHHH---HHHHHHHHcCCC
Confidence 11222 2333332 245667788985
No 12
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=26.27 E-value=72 Score=31.46 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=62.8
Q ss_pred HHHHHHHhcC-CCeE-EEEEeChhHHHHHHHHHHHHHhc---CCC-cEEEEEeCHHHHHHHHHCCCCeeeCCCCCCCCCC
Q 043225 183 ESLLSVIADK-NKTV-VLAVAGYSYREMLMSWVCRLRRL---RVT-NFVVCALDYETYQFSILQGLPVFNDPSAPSNISF 256 (473)
Q Consensus 183 ~~LL~~vA~~-d~tV-Ivt~~N~~y~d~l~Nwl~slr~l---gv~-n~lVvAlD~~a~~~c~~~Gip~f~~~~~~~~~s~ 256 (473)
.++|++...+ |=|| ++.++-..|..++..|++|.++. |.+ +|.|++-+.+. +|-+....+ ..+
T Consensus 46 ~~il~~~y~~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~--------vP~v~l~~~-r~~-- 114 (298)
T 3ioh_A 46 IDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA--------VPRVTLGTG-RQL-- 114 (298)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG--------SCCCCCCTT-EEE--
T ss_pred HHHHHHHHHHhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhh--------CCccccCCC-CeE--
Confidence 3445554432 3333 45567777889999999999875 554 67777776543 221111000 000
Q ss_pred CCc-cccchhHHHHHHHHHHHHHHHHHc----CCe-EEEecccEeeecCC
Q 043225 257 NDC-HFGTKCFQRVTKAKSRMVLQILKL----GYN-VLLSDVDVYWFKNP 300 (473)
Q Consensus 257 ~~~-~~gs~~f~~~~~~K~~vl~~lL~l----Gy~-VL~sDvDVVWlrdP 300 (473)
.-. ......|+.++..|..++....+. -.| +++.|+|+++..+-
T Consensus 115 ~V~~v~~~~~Wqd~sm~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~v 164 (298)
T 3ioh_A 115 SVLEVRAYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDHV 164 (298)
T ss_dssp EEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEEESSEEECSCB
T ss_pred EEEEeccccCCccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCeeccCc
Confidence 000 113446788888888888766542 234 67789999987653
No 13
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=23.29 E-value=32 Score=21.00 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.6
Q ss_pred CCCCChhhHHHHHHHHh
Q 043225 174 PPLDFPFSLESLLSVIA 190 (473)
Q Consensus 174 ~~~~~~~~L~~LL~~vA 190 (473)
++.||.++|..||+.+.
T Consensus 5 psydfadelakllrqa~ 21 (26)
T 1sn9_A 5 PSYDFADELAKLLRQAX 21 (26)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHhh
Confidence 57789999999999876
No 14
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.13 E-value=4.5e+02 Score=24.25 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=39.9
Q ss_pred hHHHHHHHHhcCCC-eEEEEEeChhHHHHHHHHHHHHHhcCCCcEEEEEeCH----HHHHHHHHCCCCeeeCC
Q 043225 181 SLESLLSVIADKNK-TVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDY----ETYQFSILQGLPVFNDP 248 (473)
Q Consensus 181 ~L~~LL~~vA~~d~-tVIvt~~N~~y~d~l~Nwl~slr~lgv~n~lVvAlD~----~a~~~c~~~Gip~f~~~ 248 (473)
++..-+++.+.+.+ .+++..++..... -...+..+..-+++-+|+...|. +..+.+...|+|++...
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~-~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 20 DDGNNIVKQLQEAGYKTDLQYADDDIPN-QLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHH-HHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCHHH-HHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEEC
Confidence 44444555553333 4555555443322 22334555555788888888873 44677888999987654
No 15
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=20.91 E-value=2.5e+02 Score=25.79 Aligned_cols=40 Identities=13% Similarity=-0.064 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCHHHHHHHHHCCCCeeeC
Q 043225 208 MLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFND 247 (473)
Q Consensus 208 ~l~Nwl~slr~lgv~n~lVvAlD~~a~~~c~~~Gip~f~~ 247 (473)
|+.--++.+++.|+++++|++-+++..+.+...|+.+...
T Consensus 29 li~~~l~~l~~~~~~~ivVv~~~~~i~~~~~~~g~~v~~~ 68 (252)
T 3oam_A 29 MIQWVYEQAMQAGADRVIIATDDERVEQAVQAFGGVVCMT 68 (252)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEECCHHHHHHHHHHcCCEEEEc
Confidence 4444556677888888888887788888888888877543
Done!