BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043227
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
           With Oxaloacetate And Carboxymethyldethia Coenzyme A
           (Cmx)
 pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
           With Oxaloacetate And Carboxymethyldethia Coenzyme A
           (Cmx)
 pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
           With Oxaloacetate And Carboxymethyldethia Coenzyme A
           (Cmx)
 pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
           With Oxaloacetate And Carboxymethyldethia Coenzyme A
           (Cmx)
 pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
           With Oxaloacetate And Carboxymethyldethia Coenzyme A
           (Cmx)
 pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
           With Oxaloacetate And Carboxymethyldethia Coenzyme A
           (Cmx)
          Length = 436

 Score = 30.0 bits (66), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 120 MNFSFMEGKYNGSTLSVLGRNAVLSTVREMPIVGGS---GLFRFARGYAQAKTHTFDPKT 176
           M+ S  EGK + +T+SV G++A      EMP++ G+    +    +  AQ    TFDP  
Sbjct: 1   MSASQKEGKLSTATISVDGKSA------EMPVLSGTLGPDVIDIRKLPAQLGVFTFDPGY 54

Query: 177 GD 178
           G+
Sbjct: 55  GE 56


>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
           Desulfovibrio Gigas
          Length = 560

 Score = 29.3 bits (64), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 28  FSRTLSPSSQKLRKEKLSHLHFYFHDIVSGKNPTAVRVAQAAMTNHSPTLFGVVVMIDDP 87
           F+RT+ P+S+    E+        H+ V G  PTA + A+    +  P + G  V     
Sbjct: 94  FARTVDPTSKNAMAEQYHANCMACHEKVVGSYPTAPQAAECKRCHVGPGVEGATVT---- 149

Query: 88  LTMEPEPSSKL 98
               P+PS  L
Sbjct: 150 ----PKPSLDL 156


>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
           Poxvirus Decoy Receptor
          Length = 329

 Score = 26.6 bits (57), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 33/78 (42%)

Query: 63  VRVAQAAMTNHSPTLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASASQNETGLLMAMNF 122
           + V      N + T     +++DD L     PS  ++G   G+Y+  + +       + F
Sbjct: 238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYF 297

Query: 123 SFMEGKYNGSTLSVLGRN 140
             +  +Y G+T +  G N
Sbjct: 298 ENVTEEYIGNTYTCRGHN 315


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,905,104
Number of Sequences: 62578
Number of extensions: 175941
Number of successful extensions: 376
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 8
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)