BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043227
         (190 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 23/176 (13%)

Query: 10  SVLLILISLTLVTAKSRHFSRTLSPSSQKLRKEKLSHLHFYFHDIV-SGKN--------- 59
           S LL+L    ++ A S     +  P+ +K  K    +L FYFHDI+ +GKN         
Sbjct: 3   SKLLVLFVFVMLFALS-----SAIPNKRKPYKP-CKNLVFYFHDILYNGKNAANATSAIV 56

Query: 60  --PTAVRVAQAAMTNHSPTLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASASQNETGLL 117
             P  V + + A  +H    FG +++ DDP+T+    SSK VGRAQG Y   ++N     
Sbjct: 57  AAPEGVSLTKLAPQSH----FGNIIVFDDPITLSHSLSSKQVGRAQGFYIYDTKNTYTSW 112

Query: 118 MAMNFSFMEGKYNGSTLSVLGRNAVLSTVREMPIVGGSGLFRFARGYAQAKTHTFD 173
           ++  F      + G T++  G + +++  R++ + GG+G F   RG A   T  F+
Sbjct: 113 LSFTFVLNSTHHQG-TITFAGADPIVAKTRDISVTGGTGDFFMHRGIATITTDAFE 167


>sp|B8F4C5|RNB_HAEPS Exoribonuclease 2 OS=Haemophilus parasuis serovar 5 (strain SH0165)
           GN=rnb PE=3 SV=1
          Length = 659

 Score = 30.4 bits (67), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 38  KLRKEKLSHLHFYFHDIVSGKNPTAVRVAQAAMTNHSPTLFGVVVMIDDPLTMEPEPSS 96
           ++ +E L+HL+F   D  S K+       +    N + T + +VV I DP    PE S+
Sbjct: 186 QVEREDLTHLYFTTIDSASTKDMDDALYVEPISENGTQTGWRLVVAIADPTAYIPEQSA 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,559,150
Number of Sequences: 539616
Number of extensions: 2396189
Number of successful extensions: 4876
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4874
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)