Query 043227
Match_columns 190
No_of_seqs 124 out of 547
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 5.5E-53 1.2E-57 336.6 18.9 144 43-189 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.8 0.0016 3.4E-08 53.2 14.5 120 41-172 4-127 (176)
3 PLN02343 allene oxide cyclase 97.1 0.034 7.3E-07 47.2 14.1 90 76-172 85-178 (229)
4 PF11528 DUF3224: Protein of u 67.7 59 0.0013 25.7 10.4 88 96-189 40-133 (134)
5 PRK14758 hypothetical protein; 60.3 15 0.00032 21.5 2.9 22 1-22 1-22 (27)
6 COG2372 CopC Uncharacterized p 56.1 47 0.001 26.3 6.2 68 1-69 1-70 (127)
7 PF10731 Anophelin: Thrombin i 24.0 92 0.002 21.8 2.7 24 7-30 4-27 (65)
8 PF15102 TMEM154: TMEM154 prot 21.7 95 0.002 25.2 2.8 8 46-53 97-104 (146)
9 PF08239 SH3_3: Bacterial SH3 21.0 78 0.0017 19.9 1.9 16 87-102 4-19 (55)
10 PF06347 SH3_4: Bacterial SH3 18.8 77 0.0017 20.3 1.5 16 87-102 6-21 (55)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=5.5e-53 Score=336.59 Aligned_cols=144 Identities=56% Similarity=0.943 Sum_probs=135.8
Q ss_pred ceeEEEEEeeeecCCCCcceEEeeccccCCCCCCcceeEEEEeeccccCCCCCCcceeeEEEEEEeecCCcceEEEEEEE
Q 043227 43 KLSHLHFYFHDIVSGKNPTAVRVAQAAMTNHSPTLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASASQNETGLLMAMNF 122 (190)
Q Consensus 43 k~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~s~~~FG~~~v~Dd~lt~gp~~~S~~VGrAQG~~~~~~~~~~~~~~~~~~ 122 (190)
|++||+|||||+++|||+|++.|++++..+. .+||+++|+||||||||+++||+||||||+|+.+++++.+|++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~--~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~ 78 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSS--SGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTL 78 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCCC--CCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEE
Confidence 6899999999999999999999998775433 39999999999999999999999999999999999999999999999
Q ss_pred EeecCcccCceEEEEccccccCcceeEEEeeccccccceeEEEEEEEEeeCCCCCCeEEEEEEEEEe
Q 043227 123 SFMEGKYNGSTLSVLGRNAVLSTVREMPIVGGSGLFRFARGYAQAKTHTFDPKTGDAVVEYNVNVFH 189 (190)
Q Consensus 123 vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArG~a~~~t~~~~~~~~~~i~e~~V~v~h 189 (190)
+|++++||||||+++|+++..+++||||||||||+||||||||+++++ .+..+.++|+|||||++|
T Consensus 79 vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 79 VFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999 344678999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.79 E-value=0.0016 Score=53.18 Aligned_cols=120 Identities=22% Similarity=0.306 Sum_probs=74.3
Q ss_pred cCceeEEEEEeeeecCCCCcceEEeeccccCCCCCCcceeEEEEeeccccCCCCCCcceeeEEEEEEeecC----CcceE
Q 043227 41 KEKLSHLHFYFHDIVSGKNPTAVRVAQAAMTNHSPTLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASASQ----NETGL 116 (190)
Q Consensus 41 ~~k~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~s~~~FG~~~v~Dd~lt~gp~~~S~~VGrAQG~~~~~~~----~~~~~ 116 (190)
+.|...|++|=-+...-.-|.-.++- .++....|..+-|.|+|++|.- -+.+|--+|+-+.-.. .+..+
T Consensus 4 p~kvqel~vyeiNErdR~SPa~L~ls-----~k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdry 76 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRGSPAYLRLS-----QKSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRY 76 (176)
T ss_dssp ----EEEEEEEE--S-S--S--B--S-----SSSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEE
T ss_pred ccceEEEEEEEEcccccCCCcEEEcc-----cccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceE
Confidence 45666777775443321122222321 2334679999999999999987 6899999999765442 33344
Q ss_pred EEEEEEEeecCcccCceEEEEccccccCcceeEEEeeccccccceeEEEEEEEEee
Q 043227 117 LMAMNFSFMEGKYNGSTLSVLGRNAVLSTVREMPIVGGSGLFRFARGYAQAKTHTF 172 (190)
Q Consensus 117 ~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArG~a~~~t~~~ 172 (190)
=-.+++.|- +| | .|+++|..... +..-++|.||||-|+.|+|-++++..-+
T Consensus 77 EaiySfyfG--dy-G-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 77 EAIYSFYFG--DY-G-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEEE-G--GG-E-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEEec--cc-c-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence 446667773 33 4 79999987654 4568999999999999999999987754
No 3
>PLN02343 allene oxide cyclase
Probab=97.05 E-value=0.034 Score=47.15 Aligned_cols=90 Identities=24% Similarity=0.338 Sum_probs=70.7
Q ss_pred CcceeEEEEeeccccCCCCCCcceeeEEEEEEeecC----CcceEEEEEEEEeecCcccCceEEEEccccccCcceeEEE
Q 043227 76 TLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASASQ----NETGLLMAMNFSFMEGKYNGSTLSVLGRNAVLSTVREMPI 151 (190)
Q Consensus 76 ~~FG~~~v~Dd~lt~gp~~~S~~VGrAQG~~~~~~~----~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aV 151 (190)
...|.++-|.+.|+.|.- -|.+|--.|+-+.-.. .+..+=-++++.|- +| | .|++||....-+ ..-++|
T Consensus 85 ~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfG--Dy-G-HisvqGpyltye-Dt~Lai 157 (229)
T PLN02343 85 NALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFG--DY-G-HISVQGPYLTYE-DTYLAI 157 (229)
T ss_pred ccccceeccccccccchh--hhhhcccceeEEEEEeccccCCceeEEEEEEEec--Cc-c-eeEEeccccccc-cceEEe
Confidence 568999999999999865 5789999999665543 34455567778884 34 4 699999876544 468999
Q ss_pred eeccccccceeEEEEEEEEee
Q 043227 152 VGGSGLFRFARGYAQAKTHTF 172 (190)
Q Consensus 152 VGGTG~Fr~ArG~a~~~t~~~ 172 (190)
.||+|-|+.|+|-+++..+-+
T Consensus 158 TGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 158 TGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred ecCcceeecceeEEEEeeeee
Confidence 999999999999999877654
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=67.74 E-value=59 Score=25.68 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=50.3
Q ss_pred CcceeeEEEEEEeecC-CcceEEEEEEEEe-ecCcccCceEEEEc--cccccCcceeEEEe--eccccccceeEEEEEEE
Q 043227 96 SKLVGRAQGIYASASQ-NETGLLMAMNFSF-MEGKYNGSTLSVLG--RNAVLSTVREMPIV--GGSGLFRFARGYAQAKT 169 (190)
Q Consensus 96 S~~VGrAQG~~~~~~~-~~~~~~~~~~~vF-~~g~~~GSTl~v~G--~~~~~~~~rE~aVV--GGTG~Fr~ArG~a~~~t 169 (190)
-.+.|++++-|+.+-. ++...++.+..+= .-...+|| +.++- ...-.....+|-|| -|||++...+|-..++.
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~Gs-Fvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~ 118 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGS-FVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITI 118 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEE
Confidence 4467888888777654 3444444333211 11123553 55544 32222334689999 99999999999998866
Q ss_pred EeeCCCCCCeEEEEEEEEEe
Q 043227 170 HTFDPKTGDAVVEYNVNVFH 189 (190)
Q Consensus 170 ~~~~~~~~~~i~e~~V~v~h 189 (190)
.. +...++|+..+.+
T Consensus 119 ~~-----g~h~y~f~y~l~d 133 (134)
T PF11528_consen 119 DE-----GQHAYDFEYTLPD 133 (134)
T ss_dssp ET-----TCEEEEEEEEEEE
T ss_pred CC-----CCceeeEEEECCC
Confidence 43 3346788777654
No 5
>PRK14758 hypothetical protein; Provisional
Probab=60.30 E-value=15 Score=21.47 Aligned_cols=22 Identities=14% Similarity=0.384 Sum_probs=17.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhh
Q 043227 1 MVTTFRKLVSVLLILISLTLVT 22 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (190)
||..+|-=++++.||+|.+++.
T Consensus 1 Mv~RYrFEliLivlIlCalia~ 22 (27)
T PRK14758 1 MVGRYRFEFILIILILCALIAA 22 (27)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 6777787888889999988774
No 6
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=56.12 E-value=47 Score=26.29 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=41.1
Q ss_pred CchhhHHHHHHHHHHHHHHHh--hcccccceeccCCCccccccCceeEEEEEeeeecCCCCcceEEeeccc
Q 043227 1 MVTTFRKLVSVLLILISLTLV--TAKSRHFSRTLSPSSQKLRKEKLSHLHFYFHDIVSGKNPTAVRVAQAA 69 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~k~t~l~fY~Hd~~sg~n~t~~~v~~~~ 69 (190)
|..++|.+-+.+++++++++. .+..-.|..+..|.....-.+-.-.+++++-|.+. ++=..+.+.++.
T Consensus 1 ~~~~~r~~~~~~~~~l~~~~~~~~a~AHa~l~~s~Pad~s~v~aaP~~i~L~Fse~ve-~~fs~~~l~~~d 70 (127)
T COG2372 1 MARTARALALSALALLMLALVTPQAFAHAYLVSSNPADNSVVTAAPAAITLEFSEGVE-PGFSGAKLTGPD 70 (127)
T ss_pred CchhHHHHHHHHHHHHHHHhcCcchhheeeeecCCCCCcchhhcCceeEEEecCCccC-CCcceeEEECCC
Confidence 567788884444444444333 22333677788887755445556778899988774 233556666654
No 7
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.03 E-value=92 Score=21.75 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhccccccee
Q 043227 7 KLVSVLLILISLTLVTAKSRHFSR 30 (190)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ 30 (190)
||+.+-+||+.++....+.++|-.
T Consensus 4 Kl~vialLC~aLva~vQ~APQYa~ 27 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSAPQYAP 27 (65)
T ss_pred hhhHHHHHHHHHHHHHhcCcccCC
Confidence 566666777777666666677754
No 8
>PF15102 TMEM154: TMEM154 protein family
Probab=21.73 E-value=95 Score=25.18 Aligned_cols=8 Identities=0% Similarity=-0.126 Sum_probs=4.1
Q ss_pred EEEEEeee
Q 043227 46 HLHFYFHD 53 (190)
Q Consensus 46 ~l~fY~Hd 53 (190)
+-.++.|+
T Consensus 97 q~~~qt~e 104 (146)
T PF15102_consen 97 QSALQTYE 104 (146)
T ss_pred cccccccc
Confidence 33455665
No 9
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=20.95 E-value=78 Score=19.92 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.1
Q ss_pred ccccCCCCCCcceeeE
Q 043227 87 PLTMEPEPSSKLVGRA 102 (190)
Q Consensus 87 ~lt~gp~~~S~~VGrA 102 (190)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 4688899999999875
No 10
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=18.83 E-value=77 Score=20.33 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.8
Q ss_pred ccccCCCCCCcceeeE
Q 043227 87 PLTMEPEPSSKLVGRA 102 (190)
Q Consensus 87 ~lt~gp~~~S~~VGrA 102 (190)
+|+.+|+.+|+++.++
T Consensus 6 ~lr~~P~~~~~vv~~l 21 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARL 21 (55)
T ss_pred EEEcCCCCCCCEEEEE
Confidence 6789999999999776
Done!