Query 043227
Match_columns 190
No_of_seqs 124 out of 547
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 6.5E-07 2.2E-11 72.6 15.0 102 75-188 42-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.4 1.7E-05 5.9E-10 64.6 15.7 100 76-187 51-154 (195)
3 3h6j_A Neuraminidase, sialidas 19.3 1E+02 0.0035 26.4 4.0 54 113-168 372-435 (438)
4 2xdp_A Lysine-specific demethy 15.7 1.9E+02 0.0065 21.6 4.3 56 75-150 64-119 (123)
5 2ooj_A Hypothetical protein; s 15.7 3.7E+02 0.013 20.2 12.8 72 96-170 41-121 (141)
6 2krs_A Probable enterotoxin; a 15.7 72 0.0025 20.9 1.8 16 87-102 12-27 (74)
7 2qqr_A JMJC domain-containing 15.6 1.6E+02 0.0056 21.8 3.9 56 75-150 63-118 (118)
8 2kq8_A Cell WALL hydrolase; GF 12.8 63 0.0022 20.9 0.9 16 87-102 13-28 (70)
9 2kt8_A Probable surface protei 11.1 97 0.0033 20.5 1.4 16 87-102 14-29 (76)
10 3nqh_A Glycosyl hydrolase; str 7.8 6.7E+02 0.023 22.3 6.0 30 128-157 346-375 (441)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.70 E-value=6.5e-07 Score=72.62 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=79.5
Q ss_pred CCcceeEEEEeeccccCCCCCCcceeeEEEEEEeec----CCcceEEEEEEEEeecCcccCceEEEEccccccCcceeEE
Q 043227 75 PTLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASAS----QNETGLLMAMNFSFMEGKYNGSTLSVLGRNAVLSTVREMP 150 (190)
Q Consensus 75 ~~~FG~~~v~Dd~lt~gp~~~S~~VGrAQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~a 150 (190)
....|..+.|+++|.+|.. -+.||.-+|+-+... ..+..+--.+++.|-+. | .|+++|..... +...+|
T Consensus 42 ~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~LA 114 (188)
T 2brj_A 42 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFLA 114 (188)
T ss_dssp SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEEE
T ss_pred CcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-ccceee
Confidence 4568999999999997765 689999999977665 33455666777778442 4 79999986333 446899
Q ss_pred EeeccccccceeEEEEEEEEeeCCCCCCeEEEEEEEEE
Q 043227 151 IVGGSGLFRFARGYAQAKTHTFDPKTGDAVVEYNVNVF 188 (190)
Q Consensus 151 VVGGTG~Fr~ArG~a~~~t~~~~~~~~~~i~e~~V~v~ 188 (190)
|.||||.|+.|+|.+++++..+. ..++|.+|+.
T Consensus 115 ITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 115 ITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 99999999999999999998752 2578888874
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.40 E-value=1.7e-05 Score=64.57 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=75.4
Q ss_pred CcceeEEEEeeccccCCCCCCcceeeEEEEEEeec----CCcceEEEEEEEEeecCcccCceEEEEccccccCcceeEEE
Q 043227 76 TLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASAS----QNETGLLMAMNFSFMEGKYNGSTLSVLGRNAVLSTVREMPI 151 (190)
Q Consensus 76 ~~FG~~~v~Dd~lt~gp~~~S~~VGrAQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aV 151 (190)
...|.++.|.++|.+|.. -+.||...|+-+... ..+...--.+++.|.+ .| +|+++|..-.- ...-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t~-eDs~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYITY-EDSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEETT-BCEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceecc-CceeEEE
Confidence 469999999999999987 689999999976653 2233444566777754 36 69999987443 4467999
Q ss_pred eeccccccceeEEEEEEEEeeCCCCCCeEEEEEEEE
Q 043227 152 VGGSGLFRFARGYAQAKTHTFDPKTGDAVVEYNVNV 187 (190)
Q Consensus 152 VGGTG~Fr~ArG~a~~~t~~~~~~~~~~i~e~~V~v 187 (190)
+||||.|+.|+|-+++..+-+- ..+-|..|+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~p-----fklfytfyl 154 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIFP-----FKLFYTFYL 154 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEETT-----TEEEEEEEE
T ss_pred ecCcceEcccEEEEEEeEeeee-----eeEEEEEEe
Confidence 9999999999999999777642 234555554
No 3
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=19.26 E-value=1e+02 Score=26.36 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=33.4
Q ss_pred cceEEEEEEEEeecCcccCceEEEE-ccccccCcceeEEEeeccccc---------cceeEEEEEE
Q 043227 113 ETGLLMAMNFSFMEGKYNGSTLSVL-GRNAVLSTVREMPIVGGSGLF---------RFARGYAQAK 168 (190)
Q Consensus 113 ~~~~~~~~~~vF~~g~~~GSTl~v~-G~~~~~~~~rE~aVVGGTG~F---------r~ArG~a~~~ 168 (190)
...|-..|--.|++|.++||--++- |.-.+. -..-+-|=|||.| |.|.||...+
T Consensus 372 pstwnivmpsyfndgghkgsgaqvevgslnir--lgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 372 PSTWNIVMPSYFNDGGHKGSGAQVEVGSLNIR--LGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp CSCCEECCCEEEESSSEEEESEEEEECSSEEE--EEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred CcceeEeccceecCCCcCCccceEEeeeEEEE--eccCceeeeccccccccchhhheeccceEEEE
Confidence 3456677778899999999865542 322221 1222445577777 6778887654
No 4
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=15.72 E-value=1.9e+02 Score=21.57 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCcceeEEEEeeccccCCCCCCcceeeEEEEEEeecCCcceEEEEEEEEeecCcccCceEEEEccccccCcceeEE
Q 043227 75 PTLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASASQNETGLLMAMNFSFMEGKYNGSTLSVLGRNAVLSTVREMP 150 (190)
Q Consensus 75 ~~~FG~~~v~Dd~lt~gp~~~S~~VGrAQG~~~~~~~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~a 150 (190)
+..-|..+-+.| ++|.-.+++.+|+ .....+++.|++| | ....-|+.+-....|+|
T Consensus 64 pP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 64 PPAEGEVVQVKW--PDGKLYGAKYFGS-------------NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCEEEEEc--CCCCEEeEEEeee-------------eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 456788888877 6666655555554 3455678999875 4 44456766665555554
No 5
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=15.69 E-value=3.7e+02 Score=20.23 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=43.6
Q ss_pred CcceeeEEEEEEeecCC--cceEEEEEE---EEeecCcccCceEEEE--ccccccCcceeEEEee--ccccccceeEEEE
Q 043227 96 SKLVGRAQGIYASASQN--ETGLLMAMN---FSFMEGKYNGSTLSVL--GRNAVLSTVREMPIVG--GSGLFRFARGYAQ 166 (190)
Q Consensus 96 S~~VGrAQG~~~~~~~~--~~~~~~~~~---~vF~~g~~~GSTl~v~--G~~~~~~~~rE~aVVG--GTG~Fr~ArG~a~ 166 (190)
-.+.|+.++-++.+-.+ +...++.+. -.++ ..+|| +.++ |...-......+-||= |||++...+|-..
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~--Gr~Gs-Fvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~ 117 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLC--GRQGS-FVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMA 117 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEET--TEEEE-EEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEEC--CceEE-EEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEE
Confidence 34677778888877653 333333332 2221 23453 4444 4433334457889987 9999999999999
Q ss_pred EEEE
Q 043227 167 AKTH 170 (190)
Q Consensus 167 ~~t~ 170 (190)
++..
T Consensus 118 ~~~~ 121 (141)
T 2ooj_A 118 ISIE 121 (141)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8643
No 6
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=15.65 E-value=72 Score=20.92 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=13.7
Q ss_pred ccccCCCCCCcceeeE
Q 043227 87 PLTMEPEPSSKLVGRA 102 (190)
Q Consensus 87 ~lt~gp~~~S~~VGrA 102 (190)
.|+.+|+.+++++|.+
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999999874
No 7
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=15.59 E-value=1.6e+02 Score=21.78 Aligned_cols=56 Identities=27% Similarity=0.317 Sum_probs=35.4
Q ss_pred CCcceeEEEEeeccccCCCCCCcceeeEEEEEEeecCCcceEEEEEEEEeecCcccCceEEEEccccccCcceeEE
Q 043227 75 PTLFGVVVMIDDPLTMEPEPSSKLVGRAQGIYASASQNETGLLMAMNFSFMEGKYNGSTLSVLGRNAVLSTVREMP 150 (190)
Q Consensus 75 ~~~FG~~~v~Dd~lt~gp~~~S~~VGrAQG~~~~~~~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~a 150 (190)
+..-|..+-+.| ++|.-.+++-+|+ .....+++.|++| |. ...-|+.+-....|+|
T Consensus 63 pP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~Y~V~feDg----s~-~~~kR~~iyt~~E~lP 118 (118)
T 2qqr_A 63 PPAEGEVVQVRW--TDGQVYGAKFVAS-------------HPIQMYQVEFEDG----SQ-LVVKRDDVYTLDEELP 118 (118)
T ss_dssp CCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEEETTS----CE-EEECGGGEEETTSCCC
T ss_pred CCCCCCEEEEEc--CCCCEeeeEEece-------------eEEEEEEEEECCC----CE-EEEcHHHeeccccCCc
Confidence 456788888877 7776666666655 3455688899874 43 3445666554444443
No 8
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=12.78 E-value=63 Score=20.91 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=13.6
Q ss_pred ccccCCCCCCcceeeE
Q 043227 87 PLTMEPEPSSKLVGRA 102 (190)
Q Consensus 87 ~lt~gp~~~S~~VGrA 102 (190)
.|+.||+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5789999999999874
No 9
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.09 E-value=97 Score=20.49 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.2
Q ss_pred ccccCCCCCCcceeeE
Q 043227 87 PLTMEPEPSSKLVGRA 102 (190)
Q Consensus 87 ~lt~gp~~~S~~VGrA 102 (190)
.|+.+|+.+++++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5789999999988763
No 10
>3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron}
Probab=7.82 E-value=6.7e+02 Score=22.26 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=25.5
Q ss_pred cccCceEEEEccccccCcceeEEEeecccc
Q 043227 128 KYNGSTLSVLGRNAVLSTVREMPIVGGSGL 157 (190)
Q Consensus 128 ~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~ 157 (190)
.|.|+-+.+.|..+.......++|.||-|+
T Consensus 346 ~f~g~~~~~~~~~~~~~g~a~~~~~~~~~~ 375 (441)
T 3nqh_A 346 PFTGSCVAVMGETNCHSGYARMNILDKKGE 375 (441)
T ss_dssp EECSSCEEEEEEEBTTBCEEEEEEECTTCC
T ss_pred EEcceEEEEEEeecCCCCEEEEEecCCCCc
Confidence 457889999998777777788999999998
Done!