Query 043231
Match_columns 353
No_of_seqs 184 out of 485
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 100.0 5.6E-55 1.2E-59 449.9 17.3 327 5-352 193-583 (617)
2 PF03124 EXS: EXS family; Int 100.0 4.9E-50 1.1E-54 394.2 10.1 257 93-352 4-336 (345)
3 COG5409 EXS domain-containing 100.0 5.7E-40 1.2E-44 315.6 5.5 248 93-352 39-358 (384)
4 PF03124 EXS: EXS family; Int 95.3 0.039 8.4E-07 54.7 6.4 22 142-163 121-144 (345)
5 KOG1162 Predicted small molecu 94.6 0.019 4.2E-07 61.1 2.4 24 142-167 375-400 (617)
6 COG5409 EXS domain-containing 33.2 12 0.00026 37.6 -0.4 22 142-163 155-178 (384)
7 COG5336 Uncharacterized protei 24.7 1.2E+02 0.0026 25.8 4.0 28 37-64 38-65 (116)
8 PF05545 FixQ: Cbb3-type cytoc 17.2 2.6E+02 0.0057 19.6 4.1 26 93-118 9-34 (49)
9 CHL00038 psbL photosystem II p 14.5 2.5E+02 0.0054 19.3 3.1 21 52-72 15-35 (38)
10 PF10495 PACT_coil_coil: Peric 14.1 3.9E+02 0.0084 21.0 4.6 45 10-56 18-62 (78)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-55 Score=449.91 Aligned_cols=327 Identities=28% Similarity=0.459 Sum_probs=249.8
Q ss_pred cchhhHHhhhhhhhhHHHhhhhhHHHHHhhccccccccccCCCCceehHHHHHHHHHHHHHHHHHhhhccCCCchhhhhh
Q 043231 5 KLSTTYAELSTEVLFSLTIFADMVLFLKLVLFSLSIFSTISSLNKRHFTGCFVSLFCAYAILAHLSGIFSANTEAAYMEI 84 (353)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~Gl~~G~~~vl~i~~~~~~~~~~~~~~~~~~~ 84 (353)
+||++|.+.++-+. |..+| ..|+++ ++. +.+...-.+|++||++|+.+++.+++.++++..++ ++.++++
T Consensus 193 ~Ve~~f~~~fan~n----r~~~m---~~lr~~-~~e-~h~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~~-~~~~~~~ 262 (617)
T KOG1162|consen 193 EVEETFTKHFANGN----RRKAM---KVLRPK-LKE-KHRPTFSTGFFVGCGIGLSVALVALIYLRNILQSE-QRFYMET 262 (617)
T ss_pred HHHHHHHHHHhCCC----hhHhh---hhcCCc-ccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHH
Confidence 45556555554443 22233 456777 333 33333367899999999999999999999998885 7778999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhhCCCCeEEEeeecCCCCCChHHHHHHHhhhhh-------hh--------
Q 043231 85 VYLEILFLLCGVFALLCLHLFMYGCNLFMWKSTRINYKFIFEFSPNTALKYKDAFATWACSPV-------VL-------- 149 (353)
Q Consensus 85 ~~p~~~~~i~~~~~L~~l~~~l~g~n~~vW~~~~INY~fIFe~d~r~~L~~~~~~~i~l~apf-------V~-------- 149 (353)
++| +|| +++++++++++|+|||+|+++||||+||||+|+++++.+++++++.....+ +.
T Consensus 263 ~~~-----l~~-~~~v~l~~fl~~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~~ 336 (617)
T KOG1162|consen 263 MFP-----LYG-FGLVVLHKFLYNVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSGQ 336 (617)
T ss_pred HHH-----HHH-HHHHHHHHHHhcCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 999 788 889999999999999999999999999999999999999999987221111 10
Q ss_pred ----hhhhhhhhhhhhhcccccchhhHHH---HH-------HHhccccceeehhhhhheeec--cccccceeeEEEeecC
Q 043231 150 ----MVDFFMADQLTGQGVMPVSNIKYRN---LL-------VKQGMKFSQLHNQLTVYFFCD--HQQLHLESAACYVLAG 213 (353)
Q Consensus 150 ----f~dF~laDqltSl~~~p~~~~~yr~---~L-------~~sG~~~v~F~dfflgD~~cS--~sl~Dl~~~~C~y~~g 213 (353)
.+-.+++-.+.-+ .+|+ +++||+ |+ +.||+++|.|.|||+||++|| .+++|+++++|+|..|
T Consensus 337 ~~~~~Pl~ll~~~~~~L-~~Pf-~~fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~ 414 (617)
T KOG1162|consen 337 TTELSPLILLLLFFFLL-VCPF-NTFYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGTG 414 (617)
T ss_pred CcccchHHHHHHHHhee-eccc-hhhhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeeccc
Confidence 1112222211112 3677 455543 53 579999999999999999999 9999999999999998
Q ss_pred CccccCCCCcCCCcchhHHHHHHHhhHHHHHHHH----H-----HHHHHHHH----------HHHhhccCCC-----chh
Q 043231 214 SFKTHHYDTCKNGRLYRELAYVISFLPYYWRAMQ----Y-----VSAMVAAG----------ARLTYTRQSN-----YLW 269 (353)
Q Consensus 214 ~~~~~~~~~C~s~~~~~~~~~il~~LP~~~Rf~Q----Y-----~~~il~~~----------~~~~y~~~~~-----~~W 269 (353)
+|.......|.+. ++.+.++++++|+++|++| | ++|++|++ +...|+..++ .+|
T Consensus 415 ~~~~~~~~~~~~~--~~~~~~iva~lP~~~RfLQClRR~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~~~~~~l~ 492 (617)
T KOG1162|consen 415 DFQARRTCYCKDD--YIEFQSIVAVLPYWFRFLQCLRRYRDEKAFPHLLNALKYSTTILAVMLTTLYRILPGSSLWFALW 492 (617)
T ss_pred ccccccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 6653333344444 4568999999999999999 2 35555554 3445665554 356
Q ss_pred eeeeeeecc---------CCCCCCCCCCCCCCCCcccccCCceeeehhhhhHHHHHHHHHHhhhccccccchhhHHHHHH
Q 043231 270 FGIVLGTSV---------DWGFLNPNSRNPWLRDDLILRNKSIYYISIALNVALRIAWVETVMWLHVTTVQWRMLLKFQL 340 (353)
Q Consensus 270 i~~~ii~S~---------DWgLl~~~s~~~~LR~~L~y~~~~~YY~AIv~n~iLRf~Wi~~~~~~~~~~~~~~~~~~~~a 340 (353)
++++.+||+ ||||++++++ ++|||+++||+|++||+||+.|++||++|+++.+...+....++.+.++++
T Consensus 493 ~~~s~vaS~y~~~WDvv~DWgLl~~~~~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~~~~~~~i~a 571 (617)
T KOG1162|consen 493 ILSSKVASLYTTYWDVVMDWGLLNRKSK-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFLSDSMVFIMA 571 (617)
T ss_pred HHHHHHHHHHHHHHHHheecccccccCc-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 777777877 9999999888 999999999999999999999999999998888744332222889999999
Q ss_pred HHHhhhhccccC
Q 043231 341 NLPIVKLQVLTH 352 (353)
Q Consensus 341 ~lEI~RR~iW~~ 352 (353)
.+||+|||+||+
T Consensus 572 ~LEIiRRfiWnf 583 (617)
T KOG1162|consen 572 LLEIIRRFIWNF 583 (617)
T ss_pred HHHHHHhhhhHH
Confidence 999999999996
No 2
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.9e-50 Score=394.21 Aligned_cols=257 Identities=26% Similarity=0.428 Sum_probs=203.7
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhhCCCCeEEEeeecCCCCCChHHHHHHHh----hhhh---hhhhhhhhh----hh---
Q 043231 93 LCGVFALLCLHLFMYGCNLFMWKSTRINYKFIFEFSPNTALKYKDAFATWA----CSPV---VLMVDFFMA----DQ--- 158 (353)
Q Consensus 93 i~~~~~L~~l~~~l~g~n~~vW~~~~INY~fIFe~d~r~~L~~~~~~~i~l----~apf---V~f~dF~la----Dq--- 158 (353)
+||+.++++++.+++|+|+++|+++||||++|||+||+++++++|++++.. ..+. +.+.+...+ ..
T Consensus 4 ~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~ 83 (345)
T PF03124_consen 4 PFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANWYF 83 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccchhh
Confidence 799999999999999999999999999999999999999999999987511 0011 111111100 00
Q ss_pred --hh---------hhcccccchhhH--HHHH-------HHhccccceeehhhhhheeec--cccccceeeEEEeecCCcc
Q 043231 159 --LT---------GQGVMPVSNIKY--RNLL-------VKQGMKFSQLHNQLTVYFFCD--HQQLHLESAACYVLAGSFK 216 (353)
Q Consensus 159 --lt---------Sl~~~p~~~~~y--r~~L-------~~sG~~~v~F~dfflgD~~cS--~sl~Dl~~~~C~y~~g~~~ 216 (353)
.. ...++|.+...+ |+|+ +.+|+.+|+|+|+|+||++|| ++++|+++++|+|.++.+.
T Consensus 84 ~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~~~ 163 (345)
T PF03124_consen 84 VEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGSFT 163 (345)
T ss_pred HHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc
Confidence 00 112457654433 5553 568899999999999999999 9999999999999986543
Q ss_pred ccCCCCcCCCcchhHHHHHHHhhHHHHHHHH----H------HHHHHHHHHHH----------hh--ccCC------Cch
Q 043231 217 THHYDTCKNGRLYRELAYVISFLPYYWRAMQ----Y------VSAMVAAGARL----------TY--TRQS------NYL 268 (353)
Q Consensus 217 ~~~~~~C~s~~~~~~~~~il~~LP~~~Rf~Q----Y------~~~il~~~~~~----------~y--~~~~------~~~ 268 (353)
+++++|++++. ...++++++|++||++| | .+|+.|++.++ .+ ..++ ...
T Consensus 164 -~~~~~c~~~~~--~~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 240 (345)
T PF03124_consen 164 -SPSNQCGSSSW--YIDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIWLFIL 240 (345)
T ss_pred -CCCCcCccccH--hHHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHHH
Confidence 66789998875 35699999999999999 3 26777776431 11 2221 147
Q ss_pred heeeeeeecc---------CCCCCCCC--CCCCCCCCcccccCCceeeehhhhhHHHHHHHHHHhhhcccc-ccchhhHH
Q 043231 269 WFGIVLGTSV---------DWGFLNPN--SRNPWLRDDLILRNKSIYYISIALNVALRIAWVETVMWLHVT-TVQWRMLL 336 (353)
Q Consensus 269 Wi~~~ii~S~---------DWgLl~~~--s~~~~LR~~L~y~~~~~YY~AIv~n~iLRf~Wi~~~~~~~~~-~~~~~~~~ 336 (353)
|++++++||+ ||||++++ +|+++||++++||+|++||+||+.|+++||+|+++++.++.. ..+++...
T Consensus 241 w~~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~~ 320 (345)
T PF03124_consen 241 WIIFALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHIDNSEIFI 320 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 9999999988 99999987 789999999999988999999999999999999999854433 45789999
Q ss_pred HHHHHHHhhhhccccC
Q 043231 337 KFQLNLPIVKLQVLTH 352 (353)
Q Consensus 337 ~~~a~lEI~RR~iW~~ 352 (353)
++++.+||+||++||+
T Consensus 321 ~~~~~lEi~RR~iWnf 336 (345)
T PF03124_consen 321 FILAILEIFRRFIWNF 336 (345)
T ss_pred HHHHHHHHHHHHhhhe
Confidence 9999999999999996
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-40 Score=315.57 Aligned_cols=248 Identities=19% Similarity=0.226 Sum_probs=190.1
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhhCCCCeEEEeeecCCCC----CChHHHHHHHhh---------hhh-hh---------
Q 043231 93 LCGVFALLCLHLFMYGCNLFMWKSTRINYKFIFEFSPNTA----LKYKDAFATWAC---------SPV-VL--------- 149 (353)
Q Consensus 93 i~~~~~L~~l~~~l~g~n~~vW~~~~INY~fIFe~d~r~~----L~~~~~~~i~l~---------apf-V~--------- 149 (353)
+|+|+.+......++++|||+|+|.+|||++||+++.++. .++++-.+++-. .+- |.
T Consensus 39 lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~~~a~~~~~dfh~~~i~~~~~~~slfiFl~~v~g~~~~l~~~ 118 (384)
T COG5409 39 LWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLSSTARNFNLDFHRIIIPFHFFTTSLFIFLNAVEGLKFILLFV 118 (384)
T ss_pred HHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhhhhhcccchhhHHHhhhHHHHHHHHHHHHHHhhccccceehh
Confidence 8999999999999999999999999999999999888533 555544332000 000 11
Q ss_pred --hhhhhhhhhhhhhcccccchhhH--HHHH-------HHhccccceeehhhhhheeec--cccccceeeEEEeecCCcc
Q 043231 150 --MVDFFMADQLTGQGVMPVSNIKY--RNLL-------VKQGMKFSQLHNQLTVYFFCD--HQQLHLESAACYVLAGSFK 216 (353)
Q Consensus 150 --f~dF~laDqltSl~~~p~~~~~y--r~~L-------~~sG~~~v~F~dfflgD~~cS--~sl~Dl~~~~C~y~~g~~~ 216 (353)
++-.+.+....-+ ++|.+++|| |+|| +.+|..+|+|+|||+||++|| |+++|+..++|.|..-.
T Consensus 119 ~~~P~l~v~~vf~~l-l~Pf~ii~y~sRr~Li~sliRv~l~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~~~-- 195 (384)
T COG5409 119 YFLPLLQVGTVFWFL-LKPFQIIYYWSRRYLIESLIRVFLFGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSLLF-- 195 (384)
T ss_pred hhccHHHHHHHHHHh-hcccceeeecchhhHHHHHHHHHHhccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhhhc--
Confidence 1111222222212 368888888 4465 579999999999999999999 99999999999987643
Q ss_pred ccCCCCcCCCcchhHHHHHHHhhHHHHHHHH----H------HHHHHHHHHH----------HhhccCCC-----chhee
Q 043231 217 THHYDTCKNGRLYRELAYVISFLPYYWRAMQ----Y------VSAMVAAGAR----------LTYTRQSN-----YLWFG 271 (353)
Q Consensus 217 ~~~~~~C~s~~~~~~~~~il~~LP~~~Rf~Q----Y------~~~il~~~~~----------~~y~~~~~-----~~Wi~ 271 (353)
++| -|+++|+ .+.++.+++|.++|++| | ++|++||..+ ..|+..++ .+|++
T Consensus 196 -~~p-Lc~sshs--~~~g~~~~lP~ivR~lQCLRry~ds~~~fphLlNALKYs~~i~v~~~~~~~r~~~~~~~l~~l~~~ 271 (384)
T COG5409 196 -REP-LCKSSHS--DLSGLAALLPVIVRFLQCLRRYRDSLHEFPHLLNALKYSLNIPVLFCLWLYRVYEGEERLFHLQIW 271 (384)
T ss_pred -ccc-ccccCCc--chHhHHHhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHhccCcceeehHHHH
Confidence 345 7999986 37899999999999999 3 5788888743 23554442 47999
Q ss_pred eeeeecc---------CCCCCCCCC-CCCCCCCcccccCCceeeehhhhhHHHHHHHHHHhhhccccccchhhHH-HHHH
Q 043231 272 IVLGTSV---------DWGFLNPNS-RNPWLRDDLILRNKSIYYISIALNVALRIAWVETVMWLHVTTVQWRMLL-KFQL 340 (353)
Q Consensus 272 ~~ii~S~---------DWgLl~~~s-~~~~LR~~L~y~~~~~YY~AIv~n~iLRf~Wi~~~~~~~~~~~~~~~~~-~~~a 340 (353)
++.+||+ |||+..+++ +++-+|++++++ |++||+.|+++|++|+++.. +++..+|+.... ++++
T Consensus 272 ~a~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~l~----y~~a~~inFllR~~Wi~~~~-~~~~~~~~~~~~~F~m~ 346 (384)
T COG5409 272 FALLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTLLK----YHIAMIINFLLRFSWIVYYL-PPNHIQHSADIFIFIMQ 346 (384)
T ss_pred HHHHHHHHHHhHHhheeeeecccccchhccccchhHHH----HHHHHHHHHHHHHHHHHhhc-chhhhhhhhhhHHHHHH
Confidence 9999988 999987764 456688887775 99999999999999999998 555566554444 9999
Q ss_pred HHHhhhhccccC
Q 043231 341 NLPIVKLQVLTH 352 (353)
Q Consensus 341 ~lEI~RR~iW~~ 352 (353)
++||+||++|++
T Consensus 347 ~lEi~RR~vW~~ 358 (384)
T COG5409 347 LLEILRRFVWVF 358 (384)
T ss_pred HHHHHHhheeeE
Confidence 999999999985
No 4
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=95.27 E-value=0.039 Score=54.70 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=21.0
Q ss_pred Hhhhhh--hhhhhhhhhhhhhhhc
Q 043231 142 WACSPV--VLMVDFFMADQLTGQG 163 (353)
Q Consensus 142 ~l~apf--V~f~dF~laDqltSl~ 163 (353)
++.+|+ |.|+|||+|||+||++
T Consensus 121 il~~~~~~v~f~d~~laD~LtS~~ 144 (345)
T PF03124_consen 121 ILLAPFYPVRFRDFFLADQLTSLS 144 (345)
T ss_pred HHhcccccchHHHHHHHHHHHhHH
Confidence 788999 9999999999999999
No 5
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=0.019 Score=61.08 Aligned_cols=24 Identities=54% Similarity=0.714 Sum_probs=22.5
Q ss_pred Hhhhhh--hhhhhhhhhhhhhhhccccc
Q 043231 142 WACSPV--VLMVDFFMADQLTGQGVMPV 167 (353)
Q Consensus 142 ~l~apf--V~f~dF~laDqltSl~~~p~ 167 (353)
|+++|+ |.++|||+|||+||++ ++
T Consensus 375 vi~spl~~V~~~DFfl~Dql~S~v--~a 400 (617)
T KOG1162|consen 375 VLSSPLYKVLFVDFFLADQLTSLV--LA 400 (617)
T ss_pred HHhccceeeccccccHHHHHHHHH--HH
Confidence 889999 9999999999999999 65
No 6
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=33.24 E-value=12 Score=37.64 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.3
Q ss_pred Hhhhhh--hhhhhhhhhhhhhhhc
Q 043231 142 WACSPV--VLMVDFFMADQLTGQG 163 (353)
Q Consensus 142 ~l~apf--V~f~dF~laDqltSl~ 163 (353)
++..+. |.+.||++||+++|++
T Consensus 155 v~l~~~~~v~f~dF~f~di~~SlT 178 (384)
T COG5409 155 VFLFGYSLVRFTDFFFGDILISLT 178 (384)
T ss_pred HHHhccceeeeeeeehhhHHHHHH
Confidence 556666 9999999999999998
No 7
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.71 E-value=1.2e+02 Score=25.83 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=17.3
Q ss_pred ccccccccCCCCceehHHHHHHHHHHHH
Q 043231 37 SLSIFSTISSLNKRHFTGCFVSLFCAYA 64 (353)
Q Consensus 37 ~~~~~~~~~~~~~~F~~Gl~~G~~~vl~ 64 (353)
+..++..+-...+.|.+|.++|+++...
T Consensus 38 s~k~~~~a~klssefIsGilVGa~iG~l 65 (116)
T COG5336 38 SIKGYAQAFKLSSEFISGILVGAGIGWL 65 (116)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556688888888766544
No 8
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=17.20 E-value=2.6e+02 Score=19.58 Aligned_cols=26 Identities=8% Similarity=0.372 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhhCC
Q 043231 93 LCGVFALLCLHLFMYGCNLFMWKSTR 118 (353)
Q Consensus 93 i~~~~~L~~l~~~l~g~n~~vW~~~~ 118 (353)
..++++++++++.+.|+=.|+|++.+
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 56677899999999999999998764
No 9
>CHL00038 psbL photosystem II protein L
Probab=14.52 E-value=2.5e+02 Score=19.28 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 043231 52 FTGCFVSLFCAYAILAHLSGI 72 (353)
Q Consensus 52 ~~Gl~~G~~~vl~i~~~~~~~ 72 (353)
|+.++.|+.+++.+.++.+.+
T Consensus 15 RTSLy~GLLlifvl~vlfssy 35 (38)
T CHL00038 15 RTSLYWGLLLIFVLAVLFSNY 35 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 678999998888877666543
No 10
>PF10495 PACT_coil_coil: Pericentrin-AKAP-450 domain of centrosomal targeting protein; InterPro: IPR019528 This entry represents a coiled-coil region close to the C terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C terminus of coiled-coil proteins from Drosophila and Schizosaccharomyces pombe (Fission yeast), and in the Drosophila protein it is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain, indicating that this protein at least is likely to contribute to centrosome assembly [].
Probab=14.05 E-value=3.9e+02 Score=20.96 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=32.8
Q ss_pred HHhhhhhhhhHHHhhhhhHHHHHhhccccccccccCCCCceehHHHH
Q 043231 10 YAELSTEVLFSLTIFADMVLFLKLVLFSLSIFSTISSLNKRHFTGCF 56 (353)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~Gl~ 56 (353)
|-++ .++-+...--||..++++.++.|- ..+++.++..+|++...
T Consensus 18 yL~l-~l~~~~~c~~a~L~~i~~mg~~p~-~~~~~~~~~~~fks~~~ 62 (78)
T PF10495_consen 18 YLLL-LLGGYQACNQADLRMIAQMGVQPS-DRSRSRKPRRKFKSAVR 62 (78)
T ss_pred HHHH-HHHHHHHhHHHHHHHHHHcCCCCC-ccccCCCCcccHHHHHH
Confidence 4444 566677788889999999998876 33566677888998544
Done!