Query 043231
Match_columns 353
No_of_seqs 184 out of 485
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 12.9 1.9E+02 0.0064 18.8 3.0 20 52-71 14-33 (37)
2 3bvr_A NOTI restriction endonu 3.7 4.3E+02 0.015 25.2 2.0 21 117-137 295-315 (383)
3 1by6_A Apolipoprotein C-II; am 2.8 1.5E+02 0.005 19.3 -1.5 16 6-21 16-31 (36)
4 1z8m_A Conserved hypothetical 2.7 5.8E+02 0.02 18.0 1.6 16 114-129 56-73 (88)
5 3q4o_A Uncharacterized protein 2.7 7.3E+02 0.025 21.8 2.4 33 2-34 94-135 (196)
6 2h80_A STAR-related lipid tran 2.4 3.1E+02 0.01 20.8 -0.5 17 9-25 35-51 (81)
7 3cx5_I Cytochrome B-C1 complex 2.3 9E+02 0.031 17.4 2.1 17 46-62 11-27 (65)
8 1h6q_A TCTP, P23FYP, translati 2.3 4.5E+02 0.015 22.6 0.5 18 186-203 4-23 (168)
9 3arc_H Photosystem II reaction 2.3 1.2E+03 0.039 17.0 2.5 26 48-75 25-50 (65)
10 2dky_A RHO-GTPase-activating p 2.2 3.7E+02 0.013 20.8 -0.2 16 10-25 38-53 (91)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=12.94 E-value=1.9e+02 Score=18.80 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 043231 52 FTGCFVSLFCAYAILAHLSG 71 (353)
Q Consensus 52 ~~Gl~~G~~~vl~i~~~~~~ 71 (353)
|+.++.|+.+++.+.++.+.
T Consensus 14 RTSLy~GLLlifvlavlFss 33 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhh
Confidence 78899999888877666553
No 2
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=3.70 E-value=4.3e+02 Score=25.21 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=16.4
Q ss_pred CCCCeEEEeeecCCCCCChHH
Q 043231 117 TRINYKFIFEFSPNTALKYKD 137 (353)
Q Consensus 117 ~~INY~fIFe~d~r~~L~~~~ 137 (353)
...|..|+||+||.+.-+.|-
T Consensus 295 ~~~~~if~~~~~~~~~~~~~~ 315 (383)
T 3bvr_A 295 SENAWIFVFELDPDTDASPRP 315 (383)
T ss_dssp CCCEEEEEEEECSSCCSSSCC
T ss_pred ccccEEEEEEeCCCCCCCCCc
Confidence 457899999999987666554
No 3
>1by6_A Apolipoprotein C-II; amphipathic helix, lipid association, LPL activation, signaling protein; NMR {Synthetic} SCOP: j.39.1.1
Probab=2.83 E-value=1.5e+02 Score=19.34 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=11.6
Q ss_pred chhhHHhhhhhhhhHH
Q 043231 6 LSTTYAELSTEVLFSL 21 (353)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (353)
+-+|||+++|.-++|+
T Consensus 16 avtTYagI~~DQlyh~ 31 (36)
T 1by6_A 16 AMSTYTGIFTDQVLSV 31 (36)
T ss_dssp TCTTCSSSCCSGGGSC
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4578888888776664
No 4
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=2.74 E-value=5.8e+02 Score=17.96 Aligned_cols=16 Identities=6% Similarity=0.345 Sum_probs=11.9
Q ss_pred hhhCCC--CeEEEeeecC
Q 043231 114 WKSTRI--NYKFIFEFSP 129 (353)
Q Consensus 114 W~~~~I--NY~fIFe~d~ 129 (353)
..+.+| ||++|++.+.
T Consensus 56 ~~~~ri~~dyrliY~i~~ 73 (88)
T 1z8m_A 56 FRECHIKPDVLLVYLVKD 73 (88)
T ss_dssp SEECCSSTTCEEEEEEET
T ss_pred eEEEEECCCEEEEEEEeC
Confidence 345576 6999999875
No 5
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=2.70 E-value=7.3e+02 Score=21.80 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=23.7
Q ss_pred CcccchhhHHhhhhhhhhHHHhh---------hhhHHHHHhh
Q 043231 2 TNNKLSTTYAELSTEVLFSLTIF---------ADMVLFLKLV 34 (353)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 34 (353)
+|.++.+.|.+|-..|--|+.-+ +|.+.++++-
T Consensus 94 ~~p~lq~LY~~L~e~G~~S~~dAl~vGa~iEe~dI~dl~~~l 135 (196)
T 3q4o_A 94 SNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWI 135 (196)
T ss_dssp SSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 56788999999998888887544 2555566643
No 6
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=2.36 E-value=3.1e+02 Score=20.82 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.2
Q ss_pred hHHhhhhhhhhHHHhhh
Q 043231 9 TYAELSTEVLFSLTIFA 25 (353)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (353)
.|||++.|+.|..-+..
T Consensus 35 QYAqlyed~qFPIdi~~ 51 (81)
T 2h80_A 35 QYAQLYEDSQFPINIVA 51 (81)
T ss_dssp HHHHTTTTTCCCSCHHH
T ss_pred HHHHHhhcccccccHHH
Confidence 49999999988766553
No 7
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=2.33 E-value=9e+02 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=13.3
Q ss_pred CCCceehHHHHHHHHHH
Q 043231 46 SLNKRHFTGCFVSLFCA 62 (353)
Q Consensus 46 ~~~~~F~~Gl~~G~~~v 62 (353)
..|++|.+.++.|.++-
T Consensus 11 kRnSty~~~I~~gaf~f 27 (65)
T 3cx5_I 11 KRNAVFVGTIFAGAFVF 27 (65)
T ss_dssp TTSCCCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 45889999999887653
No 8
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=2.32 E-value=4.5e+02 Score=22.59 Aligned_cols=18 Identities=0% Similarity=-0.084 Sum_probs=14.7
Q ss_pred eehhhhhheeec--cccccc
Q 043231 186 LHNQLTVYFFCD--HQQLHL 203 (353)
Q Consensus 186 F~dfflgD~~cS--~sl~Dl 203 (353)
++|-+.||.++| |.+..+
T Consensus 4 ykDiitgDEm~SDsy~~k~v 23 (168)
T 1h6q_A 4 YKDVISGDELVSDAYDLKEV 23 (168)
T ss_dssp EECTTTTSSCEETTTCEEEC
T ss_pred EeecCCCCEEeecCcccEee
Confidence 678899999999 776654
No 9
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=2.27 E-value=1.2e+03 Score=16.95 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=16.6
Q ss_pred CceehHHHHHHHHHHHHHHHHHhhhccC
Q 043231 48 NKRHFTGCFVSLFCAYAILAHLSGIFSA 75 (353)
Q Consensus 48 ~~~F~~Gl~~G~~~vl~i~~~~~~~~~~ 75 (353)
+++=..|.+.++++++.++++ .+|++
T Consensus 25 GTtplMgv~m~Lf~vFl~iiL--eIYNs 50 (65)
T 3arc_H 25 GTTPLMAVFMGLFLVFLLIIL--EIYNS 50 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH--HHHTT
T ss_pred cChhHHHHHHHHHHHHHHHHH--HHhCc
Confidence 355677888888877766433 35554
No 10
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=2.25 E-value=3.7e+02 Score=20.80 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=0.0
Q ss_pred HHhhhhhhhhHHHhhh
Q 043231 10 YAELSTEVLFSLTIFA 25 (353)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (353)
|||++.|+.|..-+.+
T Consensus 38 YAqlyed~~FPIdi~~ 53 (91)
T 2dky_A 38 YAQLYEDFLFPIDISL 53 (91)
T ss_dssp HHHHHHTTCCSCCHHH
T ss_pred HHHhcccccccccHHH
Done!