Query 043231
Match_columns 353
No_of_seqs 184 out of 485
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 04:12:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 9.8 1.3E+02 0.0094 17.9 3.0 19 52-70 14-32 (37)
2 d1v54d_ f.23.1.1 (D:) Mitochon 4.1 3.4E+02 0.025 20.7 3.7 30 43-72 70-99 (144)
3 d1z84a1 d.13.1.2 (A:23-195) Ga 3.4 2.1E+02 0.015 22.2 1.7 12 115-126 139-150 (173)
4 d1ojha_ a.214.1.1 (A:) Phycobi 3.2 2E+02 0.015 18.4 1.1 17 12-28 2-18 (52)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 3.0 4.4E+02 0.032 14.2 3.2 18 101-118 9-26 (27)
6 d2axth1 f.23.33.1 (H:2-65) Pho 3.0 3.9E+02 0.028 17.6 2.5 25 49-75 26-50 (64)
7 d2v7qi1 a.137.8.1 (I:1-47) Eps 3.0 1.5E+02 0.011 18.7 0.3 8 114-121 4-11 (47)
8 d2h80a1 a.60.1.3 (A:11-81) Del 3.0 1.1E+02 0.008 20.9 -0.5 17 9-25 25-41 (71)
9 d1wmia1 d.298.1.2 (A:1-88) Hyp 2.8 1.8E+02 0.013 19.7 0.5 17 114-130 56-73 (88)
10 d1q90n_ f.23.27.1 (N:) PetN su 2.8 4.8E+02 0.035 14.5 2.4 16 103-118 15-30 (31)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.79 E-value=1.3e+02 Score=17.89 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 043231 52 FTGCFVSLFCAYAILAHLS 70 (353)
Q Consensus 52 ~~Gl~~G~~~vl~i~~~~~ 70 (353)
|+.++.|+.+++...++.+
T Consensus 14 rtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 6889999888777755554
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.12 E-value=3.4e+02 Score=20.73 Aligned_cols=30 Identities=7% Similarity=-0.127 Sum_probs=20.9
Q ss_pred ccCCCCceehHHHHHHHHHHHHHHHHHhhh
Q 043231 43 TISSLNKRHFTGCFVSLFCAYAILAHLSGI 72 (353)
Q Consensus 43 ~~~~~~~~F~~Gl~~G~~~vl~i~~~~~~~ 72 (353)
.|...+.+-+.|.++|+++.+.+.+.....
T Consensus 70 ~p~gewK~v~g~~~~~i~~s~~i~~~~r~~ 99 (144)
T d1v54d_ 70 RSTNEWKTVVGAAMFFIGFTALLLIWEKHY 99 (144)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777788888888777776666543
No 3
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.35 E-value=2.1e+02 Score=22.21 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=10.0
Q ss_pred hhCCCCeEEEee
Q 043231 115 KSTRINYKFIFE 126 (353)
Q Consensus 115 ~~~~INY~fIFe 126 (353)
+..+|+|+.|||
T Consensus 139 ~~~~i~yV~iF~ 150 (173)
T d1z84a1 139 QHDSINYIQVFK 150 (173)
T ss_dssp TCTTCCEEEEEE
T ss_pred cCCCceEEEEEe
Confidence 346899999998
No 4
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=3.24 E-value=2e+02 Score=18.45 Aligned_cols=17 Identities=53% Similarity=0.604 Sum_probs=14.8
Q ss_pred hhhhhhhhHHHhhhhhH
Q 043231 12 ELSTEVLFSLTIFADMV 28 (353)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (353)
|||-|--||+..|+|-|
T Consensus 2 eLSLEQqF~lrsf~~qV 18 (52)
T d1ojha_ 2 ELSLEQQFSIRSFATQV 18 (52)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHhHHHHHHHH
Confidence 67889999999999877
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.05 E-value=4.4e+02 Score=14.16 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhhhhCC
Q 043231 101 CLHLFMYGCNLFMWKSTR 118 (353)
Q Consensus 101 ~l~~~l~g~n~~vW~~~~ 118 (353)
++..+-|.+.+-+|-|.|
T Consensus 9 llvvftwsiamvvwgrng 26 (27)
T d2e74h1 9 LLVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhheeeeEEEccCC
Confidence 345566778888888876
No 6
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.04 E-value=3.9e+02 Score=17.64 Aligned_cols=25 Identities=16% Similarity=0.486 Sum_probs=16.3
Q ss_pred ceehHHHHHHHHHHHHHHHHHhhhccC
Q 043231 49 KRHFTGCFVSLFCAYAILAHLSGIFSA 75 (353)
Q Consensus 49 ~~F~~Gl~~G~~~vl~i~~~~~~~~~~ 75 (353)
++=..|.+.++++++.++++ .+|++
T Consensus 26 TTplMgv~m~Lf~vfl~iiL--eiYNs 50 (64)
T d2axth1 26 TTPLMAVFMGLFLVFLLIIL--EIYNS 50 (64)
T ss_dssp THHHHHHHHHHHHHHHHHHH--HHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHH--HHhcc
Confidence 45567888888887776433 35554
No 7
>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.00 E-value=1.5e+02 Score=18.66 Aligned_cols=8 Identities=25% Similarity=1.174 Sum_probs=4.7
Q ss_pred hhhCCCCe
Q 043231 114 WKSTRINY 121 (353)
Q Consensus 114 W~~~~INY 121 (353)
|+..|+||
T Consensus 4 WR~AGlsY 11 (47)
T d2v7qi1 4 WRQAGLSY 11 (47)
T ss_dssp TTTTTCCH
T ss_pred HHHhhhhH
Confidence 66666554
No 8
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.96 E-value=1.1e+02 Score=20.95 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.4
Q ss_pred hHHhhhhhhhhHHHhhh
Q 043231 9 TYAELSTEVLFSLTIFA 25 (353)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (353)
.|||++.|+.|...+.+
T Consensus 25 qYAqlyEd~~FPidi~~ 41 (71)
T d2h80a1 25 QYAQLYEDSQFPINIVA 41 (71)
T ss_dssp HHHHTTTTTCCCSCHHH
T ss_pred HHHHHhhhccCCcchHH
Confidence 49999999988776554
No 9
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.79 E-value=1.8e+02 Score=19.67 Aligned_cols=17 Identities=18% Similarity=0.471 Sum_probs=12.9
Q ss_pred hhhCCC-CeEEEeeecCC
Q 043231 114 WKSTRI-NYKFIFEFSPN 130 (353)
Q Consensus 114 W~~~~I-NY~fIFe~d~r 130 (353)
+.|.|| ||+.||+.+..
T Consensus 56 ~~rlRvG~YRiiy~i~~~ 73 (88)
T d1wmia1 56 LYRARLGDYRVIYSVNWK 73 (88)
T ss_dssp EEEEECSSSEEEEEEETT
T ss_pred EEEEEeCCcEEEEEEECC
Confidence 555565 89999998864
No 10
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.77 E-value=4.8e+02 Score=14.51 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhhhhCC
Q 043231 103 HLFMYGCNLFMWKSTR 118 (353)
Q Consensus 103 ~~~l~g~n~~vW~~~~ 118 (353)
..+-|.+.+-+|-|.|
T Consensus 15 atfsfslslvvwgrsg 30 (31)
T d1q90n_ 15 VMFSFSLSLVVWGRSG 30 (31)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HhheeeEEEEEEeccC
Confidence 4456777888898877
Done!