BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043233
         (125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LDT|L Chain L, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
          Trypsin
 pdb|1AN1|I Chain I, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
          Length = 46

 Score = 30.8 bits (68), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 59 DPVCGMDGVTYWCGCDEARCAGATVAKKGFCQVG 92
           PVCG DG TY   C  ARC G ++  +G C  G
Sbjct: 11 KPVCGSDGRTYANSCI-ARCNGVSIKSEGSCPTG 43


>pdb|2KMO|A Chain A, Solution Structure Of Native Leech-Derived Tryptase
          Inhibitor, Ldti
 pdb|2KMP|A Chain A, Solution Structure Of Intermeidate Iia Of Leeck-Derived
          Tryptase Inhibitor, Ldti.
 pdb|2KMQ|A Chain A, Solution Structure Of Intermediate Iib Of Leech-Derived
          Tryptase Inhibitor, Ldti.
 pdb|2KMR|A Chain A, Solution Structure Of Intermediate Iic Of Leech-Derived
          Tryptase Inhibitor, Ldti
          Length = 44

 Score = 30.4 bits (67), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 59 DPVCGMDGVTYWCGCDEARCAGATVAKKGFCQVG 92
           PVCG DG TY   C  ARC G ++  +G C  G
Sbjct: 11 KPVCGSDGRTYANSCI-ARCNGVSIKSEGSCPTG 43


>pdb|1PCE|A Chain A, Solution Structure And Dynamics Of Pec-60, A Protein Of
          The Kazal Type Inhibitor Family, Determined By Nuclear
          Magnetic Resonance Spectroscopy
          Length = 60

 Score = 27.3 bits (59), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 59 DPVCGMDGVTYWCGCDEARCAGATVAKKGFCQVGDNG 95
          DPVCG DGVTY   C   +   A +  K   Q+  +G
Sbjct: 25 DPVCGTDGVTYESEC---KLCLARIENKQDIQIVKDG 58


>pdb|1Y1B|A Chain A, Solution Structure Of Anemonia Elastase Inhibitor
          Length = 48

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 51 CPVKC-FTTDPVCGMDGVTYWCGC 73
          CP+ C    DPVCG DG+TY   C
Sbjct: 4  CPLICTMQYDPVCGSDGITYGNAC 27


>pdb|1TGS|I Chain I, Three-Dimensional Structure Of The Complex Between
          Pancreatic Secretory Inhibitor (Kazal Type) And
          Trypsinogen At 1.8 Angstroms Resolution. Structure
          Solution, Crystallographic Refinement And Preliminary
          Structural Interpretation
          Length = 56

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 59 DPVCGMDGVTY-----WCGCDEARCAGATVAKKGFC 89
          +PVCG DG+TY      C  ++ R     + K G C
Sbjct: 21 NPVCGTDGITYSNECVLCSENKKRQTPVLIQKSGPC 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.135    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,369,258
Number of Sequences: 62578
Number of extensions: 76195
Number of successful extensions: 194
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 28
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)