BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043235
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 153/509 (30%), Positives = 219/509 (43%), Gaps = 58/509 (11%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
+P LP L++L ++ N F+G++P+ L L LD+S N+F G +P G
Sbjct: 263 IPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 62 LTILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLT------DLGS-- 113
L L LS NNF+G+LP + F G+L + NL+ DL S
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 114 -------------------LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
LYL NN F+GK+ L + + L L++S N LSG IP +G
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDXXXXXXXXXXXXXFVKHIYLQNNAIKG 214
+ S L L + N L+G IP +L +K+LE + L N + G
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLE-------------------TLILDFNDLTG 480
Query: 215 LIPIAXXXXXXXXXXXXXXNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274
IP N+L G IP I NL +L L N G IP +L R L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSS--LELQ-LP 331
+DL+ N NG IP+ + A + Y N + + LE Q +
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 332 VE----LHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387
E L R + ++ + F N M LD+S N SG IP +IG + +
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 388 RAXXXXXXXXXGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
G+IP+ +L+ + LDLS NKL G+IP ++ L L+ ++S NNLSG
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 448 PIPDKEQFATFDDCSYKGNSALCGSMIKR 476
PIP+ QF TF + N LCG + R
Sbjct: 719 PIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 115/452 (25%), Positives = 175/452 (38%), Gaps = 103/452 (22%)
Query: 9 KYDKLRHLDISSNNFSGK------LPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKEL 62
K + L LD+S+N+ SG L + G +L +L +S N G++ V L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDV--DVSRCVNL 202
Query: 63 TILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFS 122
LD+S NNF+ +P F G + + L L + N S
Sbjct: 203 EFLDVSSNNFSTGIP-------------------FLG-------DCSALQHLDISGNKLS 236
Query: 123 GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKS 182
G + + + T L++LN+S+N G IP L L ++EN G IP
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-------- 286
Query: 183 LEFIDXXXXXXXXXXXXXFVKHIYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGRIPH 242
+F+ + + GL N +G +P
Sbjct: 287 -DFLSGAC-------------------DTLTGL--------------DLSGNHFYGAVPP 312
Query: 243 QINERSNLHVLLLRGNYLQGRIP-NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301
S L L L N G +P + L ++R L ++DLS N +G +P L N+
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 302 TDDDSSEFFYANNVDSPVA---YYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGS 358
D +NN P+ N LQ EL+ + + G T S
Sbjct: 373 LD------LSSNNFSGPILPNLCQNPKNTLQ---ELYLQNNGFTGKIPPTL--------S 415
Query: 359 NLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIESLDLSR 418
N + + L LS N SG IP +G L +R G IP+ +K +E+L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 419 NKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
N L+G+IP L+ L+ ++S N L+G IP
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 139/349 (39%), Gaps = 61/349 (17%)
Query: 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW--IGNFSVLSVLLMSENYLQ-- 170
+L N+H +G ++ G S L L++S N LSG + +G+ S L L +S N L
Sbjct: 83 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 171 GNIPVQLNNLKSLEFIDXXXXXXXXXXXXXFV--------KHIYLQNNAIKGLIPIAXXX 222
G + L L SLE +D +V KH+ + N I G + ++
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--R 198
Query: 223 XXXXXXXXXXXNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
N IP + + S L L + GN L G + +L ++++S N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 283 RLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQV 342
+ GPIP P+ L Q +
Sbjct: 258 QFVGPIP-----------------------------------------PLPLKSLQYLSL 276
Query: 343 GAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIP 402
T +F G+ + + GLDLSGN F G +P G + + G +P
Sbjct: 277 AENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 403 -ESFSNLKMIESLDLSRNKLSGQIPPQLTELNF-LSNFNVSYNNLSGPI 449
++ ++ ++ LDLS N+ SG++P LT L+ L ++S NN SGPI
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 153/509 (30%), Positives = 219/509 (43%), Gaps = 58/509 (11%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
+P LP L++L ++ N F+G++P+ L L LD+S N+F G +P G
Sbjct: 260 IPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 62 LTILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLT------DLGS-- 113
L L LS NNF+G+LP + F G+L + NL+ DL S
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 114 -------------------LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
LYL NN F+GK+ L + + L L++S N LSG IP +G
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDXXXXXXXXXXXXXFVKHIYLQNNAIKG 214
+ S L L + N L+G IP +L +K+LE + L N + G
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLE-------------------TLILDFNDLTG 477
Query: 215 LIPIAXXXXXXXXXXXXXXNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274
IP N+L G IP I NL +L L N G IP +L R L
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSS--LELQ-LP 331
+DL+ N NG IP+ + A + Y N + + LE Q +
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 332 VE----LHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387
E L R + ++ + F N M LD+S N SG IP +IG + +
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
Query: 388 RAXXXXXXXXXGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
G+IP+ +L+ + LDLS NKL G+IP ++ L L+ ++S NNLSG
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 448 PIPDKEQFATFDDCSYKGNSALCGSMIKR 476
PIP+ QF TF + N LCG + R
Sbjct: 716 PIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 115/452 (25%), Positives = 175/452 (38%), Gaps = 103/452 (22%)
Query: 9 KYDKLRHLDISSNNFSGK------LPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKEL 62
K + L LD+S+N+ SG L + G +L +L +S N G++ V L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDV--DVSRCVNL 199
Query: 63 TILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFS 122
LD+S NNF+ +P F G + + L L + N S
Sbjct: 200 EFLDVSSNNFSTGIP-------------------FLG-------DCSALQHLDISGNKLS 233
Query: 123 GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKS 182
G + + + T L++LN+S+N G IP L L ++EN G IP
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIP-------- 283
Query: 183 LEFIDXXXXXXXXXXXXXFVKHIYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGRIPH 242
+F+ + + GL N +G +P
Sbjct: 284 -DFLSGAC-------------------DTLTGL--------------DLSGNHFYGAVPP 309
Query: 243 QINERSNLHVLLLRGNYLQGRIP-NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301
S L L L N G +P + L ++R L ++DLS N +G +P L N+
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 302 TDDDSSEFFYANNVDSPVA---YYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGS 358
D +NN P+ N LQ EL+ + + G T S
Sbjct: 370 LD------LSSNNFSGPILPNLCQNPKNTLQ---ELYLQNNGFTGKIPPTL--------S 412
Query: 359 NLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIESLDLSR 418
N + + L LS N SG IP +G L +R G IP+ +K +E+L L
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 419 NKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
N L+G+IP L+ L+ ++S N L+G IP
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 139/349 (39%), Gaps = 61/349 (17%)
Query: 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW--IGNFSVLSVLLMSENYLQ-- 170
+L N+H +G ++ G S L L++S N LSG + +G+ S L L +S N L
Sbjct: 80 FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 171 GNIPVQLNNLKSLEFIDXXXXXXXXXXXXXFV--------KHIYLQNNAIKGLIPIAXXX 222
G + L L SLE +D +V KH+ + N I G + ++
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--R 195
Query: 223 XXXXXXXXXXXNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
N IP + + S L L + GN L G + +L ++++S N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 283 RLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQV 342
+ GPIP P+ L Q +
Sbjct: 255 QFVGPIP-----------------------------------------PLPLKSLQYLSL 273
Query: 343 GAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIP 402
T +F G+ + + GLDLSGN F G +P G + + G +P
Sbjct: 274 AENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 403 -ESFSNLKMIESLDLSRNKLSGQIPPQLTELNF-LSNFNVSYNNLSGPI 449
++ ++ ++ LDLS N+ SG++P LT L+ L ++S NN SGPI
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 105/245 (42%), Gaps = 30/245 (12%)
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293
N L G IP I + + LH L + + G IP+ L Q++ L +D S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 294 NVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353
++P T F N + + S + + +++NR
Sbjct: 147 SLPNLVGIT-------FDGNRISGAIPDSYGSFS------------KLFTSMTISRNRLT 187
Query: 354 FFIG---SNLNYMAGLDLSGNEFSGEIPWKIGQ---LQNIRAXXXXXXXXXGAIPESFSN 407
I +NLN +A +DLS N G+ G Q I G + S
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--- 243
Query: 408 LKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNS 467
K + LDL N++ G +P LT+L FL + NVS+NNL G IP FD +Y N
Sbjct: 244 -KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Query: 468 ALCGS 472
LCGS
Sbjct: 303 CLCGS 307
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 24/165 (14%)
Query: 287 PIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKF 346
PIPS L N+P+ F Y +++ V P+ + Q+ +
Sbjct: 67 PIPSSLANLPYL---------NFLYIGGINNLVG----------PIPPAIAKLTQLHYLY 107
Query: 347 VTKNRYEFFIG---SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPE 403
+T I S + + LD S N SG +P I L N+ GAIP+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 404 SFSNL-KMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
S+ + K+ S+ +SRN+L+G+IPP LN L+ ++S N L G
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 358 SNLNYMAGLDLSG-NEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIESLDL 416
+NL Y+ L + G N G IP I +L + GAIP+ S +K + +LD
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 417 SRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
S N LSG +PP ++ L L N +SG IPD
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 26/200 (13%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDL 67
AK +L +L I+ N SG +P+ L I + L+ LD S N G +P S+ + L +
Sbjct: 98 AKLTQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 68 SRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFSG---- 123
N +G +P G++ P + NL +L + L N G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215
Query: 124 -----------KMTDGLLSSTLLRV--------LNVSNNMLSGDIPHWIGNFSVLSVLLM 164
+ L+ L +V L++ NN + G +P + L L +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 165 SENYLQGNIPVQLNNLKSLE 184
S N L G IP Q NL+ +
Sbjct: 276 SFNNLCGEIP-QGGNLQRFD 294
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 41/228 (17%)
Query: 99 GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWI----- 153
G + P LT L LY+ + + SG + D L L L+ S N LSG +P I
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 154 -------------------GNFSVL-SVLLMSENYLQGNIPVQLNNLKSLEFIDXXXXXX 193
G+FS L + + +S N L G IP NL +L F+D
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 194 XXXXXXXF-----VKHIYLQNNAIK---GLIPIAXXXXXXXXXXXXXXNKLFGRIPHQIN 245
F + I+L N++ G + ++ N+++G +P +
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLT 265
Query: 246 ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNR--LNGPIPSC 291
+ LH L + N L G IP Q L++ + + N+ P+P+C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
HLD+S N+ +G + L + K +YL+M+ NN P+ + + + +I++LS N
Sbjct: 503 HLDLSHNSLTGDSMDALSHL--KGLYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L L ++ N+F ++ + L +LD+S+ E P + + L +L++S NNF
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L L ++ N+F ++ + L +LD+S+ E P + + L +L++S NNF
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L L ++ N+F ++ + L +LD+S+ E P + + L +L++S NNF
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 411 IESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
I+ LDL NK+ IP Q+ +L L NV+ N L +PD
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPD 461
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,096,166
Number of Sequences: 62578
Number of extensions: 550553
Number of successful extensions: 1351
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 144
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)