Query 043235
Match_columns 515
No_of_seqs 606 out of 4149
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 02:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.4E-51 1.6E-55 450.8 31.2 458 9-473 116-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-48 6.3E-53 430.1 30.2 463 7-473 89-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.6E-45 5.6E-50 348.7 6.4 394 12-476 53-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.1E-42 4.5E-47 329.0 7.4 366 9-443 76-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.3E-40 1.8E-44 298.4 -6.4 445 10-469 44-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.7E-38 3.6E-43 289.9 -8.1 422 8-467 65-562 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.5E-37 5.4E-42 296.6 -1.8 366 10-451 6-380 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 7.2E-35 1.6E-39 279.8 -2.8 366 35-474 6-380 (1255)
9 KOG0618 Serine/threonine phosp 100.0 2.8E-33 6.2E-38 280.4 -1.9 415 13-469 47-489 (1081)
10 KOG4237 Extracellular matrix p 100.0 2.8E-31 6.2E-36 242.4 -3.4 418 2-443 58-498 (498)
11 KOG0618 Serine/threonine phosp 99.9 3.1E-30 6.7E-35 258.7 -4.8 431 13-467 23-463 (1081)
12 KOG4237 Extracellular matrix p 99.9 1.3E-29 2.7E-34 231.7 -2.4 397 14-447 49-478 (498)
13 PLN03210 Resistant to P. syrin 99.9 8.6E-26 1.9E-30 251.2 25.1 335 7-420 554-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.1E-24 2.4E-29 242.4 27.0 341 27-445 549-905 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 3.8E-23 8.3E-28 214.2 17.5 133 62-214 203-336 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 5.5E-23 1.2E-27 213.0 17.9 172 38-237 203-375 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.9E-21 1.1E-25 199.9 12.2 180 11-213 178-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.5E-21 1.8E-25 198.1 12.4 246 61-422 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.7E-20 3.7E-25 182.1 4.0 269 15-284 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.9E-20 6.2E-25 180.5 2.1 182 89-285 2-206 (319)
21 KOG0617 Ras suppressor protein 99.8 1.5E-20 3.2E-25 153.2 -3.6 179 222-470 31-213 (264)
22 KOG0617 Ras suppressor protein 99.7 2.5E-19 5.5E-24 146.1 -4.7 157 35-197 32-189 (264)
23 PLN03150 hypothetical protein; 99.4 5E-13 1.1E-17 139.6 8.2 118 362-479 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2.9E-14 6.2E-19 137.5 -2.3 192 9-211 73-271 (722)
25 COG4886 Leucine-rich repeat (L 99.3 1.9E-12 4.2E-17 129.3 8.3 194 40-242 97-295 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 1.4E-13 3E-18 132.8 -3.1 189 40-237 54-247 (722)
27 COG4886 Leucine-rich repeat (L 99.3 5.6E-12 1.2E-16 126.0 6.8 198 15-221 97-298 (394)
28 PF14580 LRR_9: Leucine-rich r 99.3 2.6E-12 5.7E-17 110.0 3.8 104 37-146 20-126 (175)
29 PF14580 LRR_9: Leucine-rich r 99.3 6.4E-12 1.4E-16 107.7 5.7 129 8-141 16-148 (175)
30 KOG3207 Beta-tubulin folding c 99.2 9.1E-13 2E-17 123.5 -0.1 201 35-237 120-339 (505)
31 KOG3207 Beta-tubulin folding c 99.2 2.3E-12 4.9E-17 120.9 0.3 204 57-261 118-339 (505)
32 KOG1909 Ran GTPase-activating 99.2 3.5E-12 7.7E-17 116.4 1.3 241 9-261 28-311 (382)
33 KOG1909 Ran GTPase-activating 99.2 6.7E-12 1.4E-16 114.6 0.9 240 35-285 29-311 (382)
34 KOG1259 Nischarin, modulator o 99.2 7.4E-12 1.6E-16 111.8 1.1 128 156-287 283-414 (490)
35 KOG0531 Protein phosphatase 1, 99.2 4.7E-12 1E-16 126.7 -0.5 264 10-288 48-321 (414)
36 KOG1259 Nischarin, modulator o 99.1 9.7E-12 2.1E-16 111.1 1.0 127 109-239 284-414 (490)
37 KOG0531 Protein phosphatase 1, 99.1 7.9E-12 1.7E-16 125.1 -0.9 222 153-450 91-322 (414)
38 PLN03150 hypothetical protein; 99.1 1.9E-10 4E-15 120.4 8.0 92 360-451 441-533 (623)
39 KOG4658 Apoptotic ATPase [Sign 99.1 1.3E-10 2.9E-15 124.2 5.7 129 36-168 523-653 (889)
40 KOG4658 Apoptotic ATPase [Sign 99.1 1.6E-10 3.5E-15 123.5 6.0 270 9-286 521-808 (889)
41 PF13855 LRR_8: Leucine rich r 99.0 1.5E-10 3.3E-15 81.6 2.9 60 386-445 2-61 (61)
42 PF13855 LRR_8: Leucine rich r 99.0 2.2E-10 4.7E-15 80.8 2.8 61 361-421 1-61 (61)
43 KOG2120 SCF ubiquitin ligase, 98.6 2E-09 4.3E-14 96.5 -4.0 157 12-168 186-349 (419)
44 KOG1859 Leucine-rich repeat pr 98.6 1.7E-09 3.7E-14 107.9 -5.2 122 86-213 165-292 (1096)
45 KOG2982 Uncharacterized conser 98.5 6E-08 1.3E-12 87.2 1.7 205 57-261 42-262 (418)
46 KOG2120 SCF ubiquitin ligase, 98.4 1E-08 2.2E-13 92.0 -3.5 222 14-258 139-373 (419)
47 KOG1859 Leucine-rich repeat pr 98.4 4.8E-09 1E-13 104.8 -7.1 129 10-146 163-292 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.3 1.2E-07 2.7E-12 84.1 0.3 184 10-193 29-254 (388)
49 KOG2982 Uncharacterized conser 98.3 2.1E-07 4.5E-12 83.8 1.7 203 200-441 71-287 (418)
50 KOG4579 Leucine-rich repeat (L 98.3 3.2E-08 6.9E-13 78.6 -3.1 106 37-146 28-136 (177)
51 KOG1644 U2-associated snRNP A' 98.3 1.5E-06 3.3E-11 74.1 5.7 104 60-166 42-149 (233)
52 KOG4579 Leucine-rich repeat (L 98.2 2E-07 4.3E-12 74.2 -1.3 134 12-151 28-164 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.1 1.3E-06 2.8E-11 77.7 2.9 218 58-286 28-286 (388)
54 KOG1644 U2-associated snRNP A' 98.1 5.5E-06 1.2E-10 70.7 5.8 127 13-144 21-151 (233)
55 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 54.3 2.9 36 37-73 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 98.1 2.8E-06 6.1E-11 54.6 2.5 35 387-422 3-37 (44)
57 PF13306 LRR_5: Leucine rich r 98.0 1.1E-05 2.4E-10 66.6 5.9 122 31-159 7-128 (129)
58 PRK15386 type III secretion pr 98.0 2.4E-05 5.3E-10 75.7 8.1 54 199-258 51-104 (426)
59 PF13306 LRR_5: Leucine rich r 97.9 1.3E-05 2.9E-10 66.0 5.3 123 54-183 6-128 (129)
60 PRK15386 type III secretion pr 97.9 6.5E-05 1.4E-09 72.9 9.0 55 83-143 50-104 (426)
61 KOG3665 ZYG-1-like serine/thre 97.8 9.1E-06 2E-10 85.3 3.0 133 37-171 123-264 (699)
62 KOG3665 ZYG-1-like serine/thre 97.7 2.1E-05 4.5E-10 82.7 3.0 178 12-193 61-262 (699)
63 KOG4341 F-box protein containi 97.5 6.2E-06 1.3E-10 78.0 -3.5 271 12-284 139-438 (483)
64 KOG4341 F-box protein containi 97.3 9.1E-06 2E-10 76.9 -4.9 262 37-300 139-430 (483)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00013 2.7E-09 65.3 2.4 84 36-122 43-129 (260)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00033 7.2E-09 62.7 2.1 102 181-282 43-153 (260)
67 KOG2123 Uncharacterized conser 96.8 7.1E-05 1.5E-09 67.2 -3.9 82 10-97 18-100 (388)
68 KOG2123 Uncharacterized conser 96.7 7.5E-05 1.6E-09 67.1 -4.2 80 61-145 20-100 (388)
69 KOG1947 Leucine rich repeat pr 96.7 0.00032 7E-09 72.1 -0.7 133 9-141 186-329 (482)
70 KOG1947 Leucine rich repeat pr 96.5 0.00029 6.3E-09 72.5 -2.5 111 59-169 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0043 9.3E-08 33.0 0.6 12 411-422 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0083 1.8E-07 31.9 1.0 12 38-49 2-13 (22)
73 KOG0473 Leucine-rich repeat pr 95.1 0.0014 3.1E-08 57.5 -3.7 84 360-446 41-124 (326)
74 smart00369 LRR_TYP Leucine-ric 94.3 0.043 9.3E-07 30.5 2.3 23 59-82 1-23 (26)
75 smart00370 LRR Leucine-rich re 94.3 0.043 9.3E-07 30.5 2.3 23 59-82 1-23 (26)
76 KOG4308 LRR-containing protein 93.7 0.00052 1.1E-08 69.2 -11.0 83 132-214 203-304 (478)
77 PF13504 LRR_7: Leucine rich r 93.6 0.039 8.5E-07 27.2 1.1 11 62-72 3-13 (17)
78 KOG4308 LRR-containing protein 93.5 0.00058 1.3E-08 68.8 -11.0 183 62-262 89-304 (478)
79 KOG0473 Leucine-rich repeat pr 93.4 0.0016 3.5E-08 57.2 -6.8 84 35-122 41-124 (326)
80 PF13504 LRR_7: Leucine rich r 93.3 0.053 1.2E-06 26.7 1.3 13 12-24 2-14 (17)
81 smart00370 LRR Leucine-rich re 92.3 0.15 3.1E-06 28.3 2.4 21 11-32 2-22 (26)
82 smart00369 LRR_TYP Leucine-ric 92.3 0.15 3.1E-06 28.3 2.4 21 11-32 2-22 (26)
83 KOG3864 Uncharacterized conser 91.6 0.025 5.5E-07 48.9 -1.9 82 362-443 102-186 (221)
84 KOG3864 Uncharacterized conser 90.1 0.034 7.5E-07 48.1 -2.5 33 38-70 103-135 (221)
85 smart00365 LRR_SD22 Leucine-ri 83.1 1.3 2.8E-05 24.6 2.1 17 181-197 2-18 (26)
86 KOG4242 Predicted myosin-I-bin 73.9 13 0.00029 36.9 7.4 107 37-145 166-280 (553)
87 smart00364 LRR_BAC Leucine-ric 73.3 2.3 5E-05 23.5 1.2 17 61-78 3-19 (26)
88 TIGR00864 PCC polycystin catio 73.0 1.7 3.8E-05 52.3 1.5 36 415-450 1-36 (2740)
89 smart00368 LRR_RI Leucine rich 72.8 2.6 5.7E-05 23.7 1.5 14 409-422 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 70.5 16 0.00035 36.4 7.1 272 10-285 164-481 (553)
91 KOG3763 mRNA export factor TAP 69.6 4.2 9.1E-05 41.1 3.1 63 35-98 217-283 (585)
92 KOG3763 mRNA export factor TAP 61.5 4.1 9E-05 41.2 1.3 64 358-423 215-284 (585)
93 TIGR00864 PCC polycystin catio 41.5 16 0.00035 44.7 2.1 34 391-424 1-34 (2740)
94 smart00367 LRR_CC Leucine-rich 37.5 23 0.00051 19.3 1.4 11 60-70 2-12 (26)
95 smart00082 LRRCT Leucine rich 21.0 48 0.001 21.4 0.8 11 466-476 1-11 (51)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.4e-51 Score=450.77 Aligned_cols=458 Identities=34% Similarity=0.512 Sum_probs=281.2
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.+++|++|++++|++++.+|... +++|++|+|++|.+++..|..++++++|++|++++|.+.+.+|..+ .++++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~---l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCccccccCccc---cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCC
Confidence 55666666666666665555422 4566666666666665566666666666666666666654555443 5566666
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
+|++++|.+++..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 66666666655555666666666666666666665566666666666666666666655556666666666666666666
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
+.+..|..+..+++|+.|++++|.+.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 655555555556666666666655531 124455555555555555555555555555555555555555555555
Q ss_pred hhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCC----------------
Q 043235 244 INERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS---------------- 307 (515)
Q Consensus 244 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~---------------- 307 (515)
+..+++|+.|++++|++.+..|..++.+++|+.|++++|++.+..|..+..++.|+.+....+.
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 5555555555555555554444444444444444444444444444444444444333222110
Q ss_pred --------cccccC----CCCCCc--cccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCC
Q 043235 308 --------EFFYAN----NVDSPV--AYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSG 370 (515)
Q Consensus 308 --------~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~ 370 (515)
...... ...... ...........+..... ..+.......+.... .....+++|++|+|++
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---ccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 000000 000000 00000000000000000 011111111221111 0123478899999999
Q ss_pred CcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 371 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
|++.+.+|..+..+++|++|+|++|++++.+|..|..+++|+.|+|++|++++.+|..+..+++|++|++++|++++.+|
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCcccccCCCCCCCCc
Q 043235 451 DKEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 451 ~~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
..+++.++...++.||+.+|+.+
T Consensus 589 ~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 589 STGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-48 Score=430.13 Aligned_cols=463 Identities=32% Similarity=0.460 Sum_probs=384.8
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
+..+++|++|++++|++++.+|..++..+++|++|+|++|.+++..|. ..+++|++|++++|.+++.+|..+ ..+++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~ 165 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSS 165 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCC
Confidence 467899999999999999899999885689999999999999987775 568999999999999987788765 88999
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCc
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 241 (515)
|.+.+.+|..+..+++|+.|++++|.+.. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 99999999999999999999999998843 3468899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcc-----cccC--C
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEF-----FYAN--N 314 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~-----~~~~--~ 314 (515)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..++.++.+....+... .+.. .
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999998888777766544322110 0000 0
Q ss_pred CCCCccccCCcccccCcc-----------ccccc-----------cccccceeeeccCccccc--cccccccCCEEEcCC
Q 043235 315 VDSPVAYYNSSLELQLPV-----------ELHFR-----------QDQQVGAKFVTKNRYEFF--IGSNLNYMAGLDLSG 370 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~-----------~~~~~-----------~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~ 370 (515)
....... ........+. .+..+ ....+....+..+..... .....++|+.|++++
T Consensus 406 L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 406 LRRVRLQ-DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCEEECc-CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 0000000 0000000000 00000 001111111111111100 011246799999999
Q ss_pred CcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 371 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
|++++..|..+..+++|+.|+|++|++.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CcccCCCCcccccCCCCCCCCc
Q 043235 451 D-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 451 ~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
. ...+..++.+++.+|+..+..|
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhcCcccCEEeccCCcceeeCC
Confidence 8 4567889999999999887554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-45 Score=348.73 Aligned_cols=394 Identities=23% Similarity=0.227 Sum_probs=350.1
Q ss_pred CccEEeCcCCcCCCCC-----chhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 12 KLRHLDISSNNFSGKL-----PENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~-----p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
.-+.||++++.+. .+ +..+ ++..+.|++++|+++...+..|.++++|+.+++.+|.++ .+|... ....+
T Consensus 53 ~~~lldcs~~~le-a~~~~~l~g~l---p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sgh 126 (873)
T KOG4194|consen 53 NTRLLDCSDRELE-AIDKSRLKGFL---PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGH 126 (873)
T ss_pred CceeeecCccccc-cccccccCCcC---ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccc
Confidence 4578899999886 33 3322 457889999999999999999999999999999999999 999843 33456
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|+.|+|.+|.|+....+.+..++.|+.|||+.|.|+.+....|..-.++++|+|++|.|+......|..+.+|.+|.|+.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 99999999999988888899999999999999999977777787778999999999999988888999999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCc
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 241 (515)
|+++...+..|.++++|+.|+|..|+|.. +..+++|+.|.|..|.|..+-..+|..+.++++|+|+.|++.....
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 99998888889999999999999999954 4488999999999999999999999999999999999999998889
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccc
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAY 321 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (515)
.|+.+++.|+.|+|++|.|..+-++++..+++|+.|+|++|+|+...+..|.
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~---------------------------- 338 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR---------------------------- 338 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH----------------------------
Confidence 9999999999999999999999999999999999999999999865554443
Q ss_pred cCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccC
Q 043235 322 YNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAI 401 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 401 (515)
.+..|++|+|++|.+...-...|..+.+|++|||++|.++..+
T Consensus 339 -------------------------------------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 339 -------------------------------------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred -------------------------------------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 2678899999999999777778999999999999999997654
Q ss_pred ---hhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCCCCccCC
Q 043235 402 ---PESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKR 476 (515)
Q Consensus 402 ---~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c~~~l~~ 476 (515)
...|.+|++|+.|++.+|+|..+...+|.+++.|++|||.+|.|..+-|..-....++.+.+..-..+|+|.++.
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHH
Confidence 457889999999999999999777889999999999999999999888874444488888888888999998764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-42 Score=328.97 Aligned_cols=366 Identities=23% Similarity=0.249 Sum_probs=324.8
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
-....+.||+++|.+. .+...++..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ .+..+.++.++.|+
T Consensus 76 lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr 152 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR 152 (873)
T ss_pred Cccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence 3456688999999998 555455555899999999999999 78887777888999999999999 78877778899999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
.||||.|.|+.+....|..-.++++|+|++|+|+....+.|..+.+|.+|.|++|+++...+..|.++++|+.|+|..|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 99999999998777788888899999999999999999999999999999999999998777889999999999999999
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCCcC-----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
+...-.-.|.++++|+.|.+..|.+..+. .+.++++|+|+.|+++.+-..++.+++.|+.|++|+|.|..+.++.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 98554667999999999999999997765 6888999999999999998999999999999999999999999999
Q ss_pred hhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccC
Q 043235 244 INERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYN 323 (515)
Q Consensus 244 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (515)
+...++|+.|+|++|+|+...+..|..+..|++|+|++|+++......|
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af------------------------------- 361 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF------------------------------- 361 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-------------------------------
Confidence 9999999999999999999999999999999999999999963222222
Q ss_pred CcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc---chhccccCCeeccCCcccccc
Q 043235 324 SSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW---KIGQLQNIRALNLSNNLLSGA 400 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~ 400 (515)
..+++|++|||++|.+...+.+ .|.++++|+.|++.+|++..+
T Consensus 362 ----------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 362 ----------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred ----------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 2378899999999998865543 377899999999999999978
Q ss_pred ChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 401 IPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 401 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
...+|.++.+|++|||.+|.|..+-|.+|..+ .|++|-+..-
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 88899999999999999999998999999998 8888877653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-40 Score=298.40 Aligned_cols=445 Identities=28% Similarity=0.372 Sum_probs=343.3
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
-..++.+++++|.+. .+.+++.. +..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.+ ..+.+|+.
T Consensus 44 qv~l~~lils~N~l~-~l~~dl~n-L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~ 118 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLREDLKN-LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVK 118 (565)
T ss_pred hcchhhhhhccCchh-hccHhhhc-ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhh
Confidence 345788999999998 77777776 688999999999999 78999999999999999999999 999988 67899999
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
++.++|.+. ..++.++.+..|+.++..+|+++ ..|.++..+.++..+++.+|++....|..+. ++.|++|+...|.+
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence 999999997 56788999999999999999998 6788888999999999999999965555554 99999999999998
Q ss_pred cccccccccCCCCCcEEeCCCCCC---CCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhc
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSL---ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l---~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 246 (515)
. .+|..++.+.+|+.|++..|++ ++++++..|+++++..|.|.-+..+...+++++.+||+.+|+++ ..|+.+..
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 8 7888899999999999999998 45557888999999999999877777779999999999999998 78999999
Q ss_pred CCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCc------ccccccCCCCCcccccCCCCC---
Q 043235 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP------FWREATDDDSSEFFYANNVDS--- 317 (515)
Q Consensus 247 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~------~l~~~~~~~~~~~~~~~~~~~--- 317 (515)
+.+|++||+++|.|+ ..|..++++ .|+.|-+.+|++.. +-..+-+.. .++.....++....-......
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 999999999999999 778889999 99999999999852 111111110 111100000000000000000
Q ss_pred -----CccccC--------Ccccc-cCcccc-ccccccccceeeeccC-----------------------ccccc---c
Q 043235 318 -----PVAYYN--------SSLEL-QLPVEL-HFRQDQQVGAKFVTKN-----------------------RYEFF---I 356 (515)
Q Consensus 318 -----~~~~~~--------~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-----------------------~~~~~---~ 356 (515)
+..+.. ..... ..|.++ ...+...+.....+++ ....| .
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 000000 00000 000000 0000000000111111 11111 1
Q ss_pred ccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCC
Q 043235 357 GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLS 436 (515)
Q Consensus 357 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 436 (515)
.+.+++|..|+|++|-+. .+|..++.+..|++|++++|++. .+|+++..+..++.+-.++|++....|+.+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 244888999999999998 78999999999999999999998 8899999999999999999999977777799999999
Q ss_pred EEecccCcccccCCCCcccCCCCcccccCCCCC
Q 043235 437 NFNVSYNNLSGPIPDKEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 437 ~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~ 469 (515)
+|||.+|.+....|..+.+++++.+.+.|||+-
T Consensus 509 tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999988888899999999999999975
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-38 Score=289.91 Aligned_cols=422 Identities=25% Similarity=0.365 Sum_probs=304.7
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
.++..+.+|++++|++. .+|+.++. +..++.++.++|+++ .+|..+..+.+|+.+++++|.+. .+|+++ ..+..|
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDL 139 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhh
Confidence 35777899999999998 89999988 678999999999999 78999999999999999999998 888887 568889
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
+.++..+|+++ ..|.++.++.+|..+++.+|++....+..+. ++.|++||...|.++ .+|..++.+.+|..|++..|
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 99999999997 5678888888999999999998855555444 888999999888887 67778888888888889888
Q ss_pred cccccccccccCCCCCcEEeCCCCCCCCcC-----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCch
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 242 (515)
++. ..| .|.++..|+++.++.|++..++ +++++..|+++.|++++. |..+.-+.+|+.||+|+|.|+ ..|.
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccc-cCCc
Confidence 888 555 6788888888888888885554 677788888888888775 666667777888888888887 5566
Q ss_pred hhhcCCCcCEEEccCccCCC-------------------------------------C-CCccc---cCCCC--------
Q 043235 243 QINERSNLHVLLLRGNYLQG-------------------------------------R-IPNQL---CQLRK-------- 273 (515)
Q Consensus 243 ~~~~l~~L~~L~L~~n~i~~-------------------------------------~-~~~~~---~~l~~-------- 273 (515)
.++++ +|+.|-+.+|.+.. . .+..+ ....+
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 77777 78888887776541 0 00000 01122
Q ss_pred ------------------CCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccc
Q 043235 274 ------------------LSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELH 335 (515)
Q Consensus 274 ------------------L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
.+..++++|++. .+|..+..+..+............|.. ..
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~--------------------~~ 430 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVP--------------------LE 430 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccch--------------------HH
Confidence 344555555553 344433332222221111111111100 00
Q ss_pred cccccccceeeeccCccccc--cccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCe
Q 043235 336 FRQDQQVGAKFVTKNRYEFF--IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 413 (515)
....+.+..-...++-.... .+..+..|+.||+++|++. ..|.+...+..++.+-.++|++..+.+..+.+|.+|.+
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 01111111111222211111 1233667999999999998 88998888889999999999999788888999999999
Q ss_pred eeCCCCcccccCCccccCCCCCCEEecccCcccccCCC--CcccCCCCcccccCCC
Q 043235 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD--KEQFATFDDCSYKGNS 467 (515)
Q Consensus 414 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~l~~~~~~gn~ 467 (515)
|||.+|.+. .+|..++++++|++|++++|+|. .|. ...-.+...+++.+++
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC--CCHHHHhccChHHHHHHhccc
Confidence 999999999 88999999999999999999998 444 2223444455555543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-37 Score=296.58 Aligned_cols=366 Identities=24% Similarity=0.357 Sum_probs=315.2
Q ss_pred CCCccEEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 10 YDKLRHLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
++-++-+|+++|.++ +..|.+... +++++.|.|...++. .+|+.++.+.+|++|.+++|++. ++-..+ +.++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence 455788999999998 589999988 799999999999998 79999999999999999999998 666555 7899999
Q ss_pred EEEccCcccc-ccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 89 WLDLSNNNFY-GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 89 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
.+++.+|++. +-+|..+..+..|.+|+|++|++. ..|..+...+++-.|+|++|+|..+....|.++..|-.|+|++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999999885 345777889999999999999998 78999999999999999999999666667889999999999999
Q ss_pred cccccccccccCCCCCcEEeCCCCCC-----CCcCCCCcccEEEcccCcee-eeccccccCCCCccEEeccCCccCCcCc
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSL-----ISLSNLSFVKHIYLQNNAIK-GLIPIALLRSSTLLTLDLRDNKLFGRIP 241 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l-----~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 241 (515)
++. ..|..+..+..|++|+|++|.+ ..++.+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 998 6677789999999999999987 45668888999999987644 346889999999999999999997 889
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccc
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAY 321 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (515)
..+..+++|+.|+|++|+|+ .+........+|++|++|+|+++ .+|.++.+
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 99999999999999999999 45556677789999999999997 77877765
Q ss_pred cCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcc-ccccchhccccCCeeccCCcccccc
Q 043235 322 YNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG-EIPWKIGQLQNIRALNLSNNLLSGA 400 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~ 400 (515)
++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. .
T Consensus 290 --------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-l 330 (1255)
T KOG0444|consen 290 --------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-L 330 (1255)
T ss_pred --------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-c
Confidence 4556667777777653 35777888888888888888887 7
Q ss_pred ChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 401 IPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 401 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
.|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+=.-..|.
T Consensus 331 VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 8888888888888888888887 7888888888888888888876666554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=7.2e-35 Score=279.78 Aligned_cols=366 Identities=24% Similarity=0.353 Sum_probs=317.3
Q ss_pred ccCCcEEECcCCccc-ccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 35 FQKLIYLDMSKNNFE-GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|..+ +.+.+|++|.+++|++.. +...+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 456788899999999 688999999999999999999998 999987 789999999999999974 4577889999999
Q ss_pred EEcccCCCC-CcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCC
Q 043235 114 LYLDNNHFS-GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192 (515)
Q Consensus 114 L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 192 (515)
+.+..|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-.|+|++|+|..++-..|.+++-|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 999999986 346777888999999999999998 789889999999999999999996555567799999999999999
Q ss_pred CCCcC----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC-CcCchhhhcCCCcCEEEccCccCCCCCCcc
Q 043235 193 LISLS----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF-GRIPHQINERSNLHVLLLRGNYLQGRIPNQ 267 (515)
Q Consensus 193 l~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 267 (515)
+..++ .+..|++|.|++|.+...--..+..+++|++|.+++.+=+ ..+|.++..+.+|..+|++.|.+. ..|+.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 97776 6788999999999887554445666778889999987644 357888999999999999999998 89999
Q ss_pred ccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeee
Q 043235 268 LCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFV 347 (515)
Q Consensus 268 ~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
+..+++|+.|+||+|+|+.. ..+.
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~------------------------------------------------------- 264 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTE------------------------------------------------------- 264 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccH-------------------------------------------------------
Confidence 99999999999999999731 1110
Q ss_pred ccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccc-cChhhhcCccCCCeeeCCCCcccccCC
Q 043235 348 TKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG-AIPESFSNLKMIESLDLSRNKLSGQIP 426 (515)
Q Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 426 (515)
....+|++|+||.|+++ .+|.++..++.|+.|++.+|+++- -+|..++++..|+.+..++|.+. ..|
T Consensus 265 ----------~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP 332 (1255)
T KOG0444|consen 265 ----------GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP 332 (1255)
T ss_pred ----------HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence 12467899999999999 899999999999999999999863 37999999999999999999998 899
Q ss_pred ccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCcc
Q 043235 427 PQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMI 474 (515)
Q Consensus 427 ~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l 474 (515)
+.+..+..|+.|.|+.|++.. +|+ ...+..++.+++..||.+--+|=
T Consensus 333 EglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCC
Confidence 999999999999999999984 555 55678889999999998765543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-33 Score=280.37 Aligned_cols=415 Identities=26% Similarity=0.346 Sum_probs=246.8
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
|+.||+++|.+. ..|..+.. +.+|+.|+++.|.|. ..|.+..++.+|++|.|.+|.+. .+|.++ ..+.+|++|++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITL-LSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccc-cCCchhhh-HHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhhhccccccc
Confidence 666666666665 56665555 456666666666666 45566666666666666666665 566554 55666666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
+.|.+. ..|..+..+..++.+..++|.-... ++.. .++.+++..|.+.+.++..+..+.. .|++++|.+. .
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~ 192 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V 192 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h
Confidence 666654 4455555555555555555511101 1111 1566666666666666655555555 5777777766 2
Q ss_pred ccccccCCCCCcEEeCCCCCCCCcC-CCCc----------------------ccEEEcccCceeeeccccccCCCCccEE
Q 043235 173 IPVQLNNLKSLEFIDLSENSLISLS-NLSF----------------------VKHIYLQNNAIKGLIPIALLRSSTLLTL 229 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~l~-~l~~----------------------L~~L~L~~n~i~~~~~~~~~~~~~L~~L 229 (515)
..+..+.+|+.|....|++..+. ..++ |++++++.|+++++ |.++..+.+|+.+
T Consensus 193 --~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l 269 (1081)
T KOG0618|consen 193 --LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEAL 269 (1081)
T ss_pred --hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEe
Confidence 23455566666666666654443 3344 44555555555543 2555555555555
Q ss_pred eccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcc-cccccCCCCCc
Q 043235 230 DLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF-WREATDDDSSE 308 (515)
Q Consensus 230 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~-l~~~~~~~~~~ 308 (515)
+..+|+++ ..|..+...++|+.|.+..|.+. -+|....+++.|++|+|..|.+....+..+..... ++.+.......
T Consensus 270 ~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 270 NANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred cccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence 55555553 44444444555555555555555 45555666777777777777775322222211111 11111000000
Q ss_pred ccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCccccccchhccc
Q 043235 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ 385 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 385 (515)
-. .+ .+... ....+..-...++.... .....+.+|+.|+|++|++.......+.++.
T Consensus 348 ~~------lp-~~~e~-------------~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 348 ST------LP-SYEEN-------------NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred cc------cc-cccch-------------hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 00 00 00000 00000011111111110 1123488999999999999955555678999
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccccc-CCCCcccCCCCccccc
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP-IPDKEQFATFDDCSYK 464 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~l~~~~~~ 464 (515)
.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.....++++.+++.
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 9999999999999 78899999999999999999999 677 899999999999999999864 4445555999999999
Q ss_pred CCCCC
Q 043235 465 GNSAL 469 (515)
Q Consensus 465 gn~~~ 469 (515)
||.++
T Consensus 485 GN~~l 489 (1081)
T KOG0618|consen 485 GNTRL 489 (1081)
T ss_pred CCccc
Confidence 99974
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-31 Score=242.39 Aligned_cols=418 Identities=21% Similarity=0.200 Sum_probs=242.6
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcC-CcCcccCchHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR-NNFTGKLPRPI 80 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~l~~~~ 80 (515)
|.++|..-.+....++|..|+|+ .+|+..|..+++||+|||++|.|+.+.|++|.+++.|..|.+.+ |+|+ .+|...
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGA 135 (498)
T ss_pred cccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhH
Confidence 34566666666777777777777 67776666677777777777777777777777777766666655 6776 777777
Q ss_pred HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCC------------C
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSG------------D 148 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------~ 148 (515)
|.++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+..+....|..+..++++.+..|.+.. .
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 7777777777777777766666667777777777777777765544566677777777776665321 1
Q ss_pred cChhccCCCCccEEEccCccccccccccccCCCCCcEE--eCCCC--CC-----CCcCCCCcccEEEcccCceeeecccc
Q 043235 149 IPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI--DLSEN--SL-----ISLSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L--~L~~n--~l-----~~l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
.|..++.........+.+.++..+.+..|... ++.+ .++.. .. ..+..+++|++|++++|+|+++.+.+
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 12222222222333333333333322222211 1111 11111 11 22447888999999999999988889
Q ss_pred ccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 220 LLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 220 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
|.+...+++|.|..|+|..+....|.++..|+.|+|.+|+|+...|.+|..+..|.+|++-.|++.... .+.++.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC-----~l~wl~ 368 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC-----RLAWLG 368 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc-----chHHHH
Confidence 999999999999999998777788888999999999999999888899999999999999888874211 111111
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCE-EEcCCCcCccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAG-LDLSGNEFSGEIP 378 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~ 378 (515)
....... ..-......+.+............+......... ....... -...++.+.+ ..-|+..+. .+|
T Consensus 369 ~Wlr~~~--~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~--~~~~s~~----cP~~c~c~~tVvRcSnk~lk-~lp 439 (498)
T KOG4237|consen 369 EWLRKKS--VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEEL--GCLTSSP----CPPPCTCLDTVVRCSNKLLK-LLP 439 (498)
T ss_pred HHHhhCC--CCCCCCCCCCchhccccchhccccccccCCcccc--CCCCCCC----CCCCcchhhhhHhhcccchh-hcC
Confidence 1000000 0000000000100000000000000000000000 0000000 0001222222 223333333 444
Q ss_pred cchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 379 WKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 379 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+|....-..|.++++|.+|-|++|
T Consensus 440 ~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4332 24567888888887 55554 56677 7888888888666677888888888888876
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-30 Score=258.72 Aligned_cols=431 Identities=23% Similarity=0.248 Sum_probs=276.9
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
++.|+++.|-+- ..|-.+....-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.|. .+|.+. .++.+|+++.|
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhhee
Confidence 666777777665 334333322345777777777777 57777777777777777777777 777554 56777777777
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
.+|.+. ..|..+..+.+|++|+++.|++. ..|..+..+..++.+..++|.-... ++... ++.+++..|.+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence 777765 55677777777777777777776 5666777777777777777722112 22222 77888888888877
Q ss_pred ccccccCCCCCcEEeCCCCCCCC--cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCc
Q 043235 173 IPVQLNNLKSLEFIDLSENSLIS--LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~--l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 250 (515)
++..+..+.. .|||++|.+.. +..+++|+.+....|++..... ..++++.|+.++|.++...+. ....+|
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl 243 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNL 243 (1081)
T ss_pred hhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccc
Confidence 7777776666 79999999873 3477888888888888776422 234666677777766533222 122466
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCC------CCCccccCC
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNV------DSPVAYYNS 324 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~ 324 (515)
+++++++|+++ .+|++++.+.+|+.++..+|+++ .+|..+.....++.+....+..-+..... .+.....+.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 66777777666 44466666677777777666663 44443333333332211100000000000 000000000
Q ss_pred cccccCccccc--cccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccCh
Q 043235 325 SLELQLPVELH--FRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIP 402 (515)
Q Consensus 325 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 402 (515)
...... .... ......+............+....++.|+.|++.+|.+++.....+.+++.|+.|+|++|++.....
T Consensus 322 L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 322 LPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred ccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 000000 0000 0000000000000001113344558889999999999998877789999999999999999996666
Q ss_pred hhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCC
Q 043235 403 ESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNS 467 (515)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~ 467 (515)
..+.++..|++|+||+|+++ .+|.....+..|++|...+|++. ..|+..+...++.+++.-|.
T Consensus 401 s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 78899999999999999999 78899999999999999999998 56788888888888887663
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-29 Score=231.67 Aligned_cols=397 Identities=17% Similarity=0.183 Sum_probs=277.9
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
-..|.++-.++ ++|..+ ++....++|..|.|+.+.+.+|+.+++||.|||++|.|+ .|.+..|.++++|..|-+.
T Consensus 49 ~~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred ceEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhh
Confidence 35778888888 899887 578999999999999888999999999999999999999 8888889999998888776
Q ss_pred C-ccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc--
Q 043235 94 N-NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ-- 170 (515)
Q Consensus 94 ~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 170 (515)
+ |+|+....+.|+++..|+.|.+.-|++.....++|..++++..|.+..|.+..+....|..+..++++.+..|.+.
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 6 9999888888999999999999999999888899999999999999999998555558999999999999988732
Q ss_pred ----------ccccccccCCCCCcEEeCCCCCCCCcCCCC---cccEE---EcccCceeee-ccccccCCCCccEEeccC
Q 043235 171 ----------GNIPVQLNNLKSLEFIDLSENSLISLSNLS---FVKHI---YLQNNAIKGL-IPIALLRSSTLLTLDLRD 233 (515)
Q Consensus 171 ----------~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~---~L~~L---~L~~n~i~~~-~~~~~~~~~~L~~L~Ls~ 233 (515)
...|..++......-..+.+.++..+..-. .++.+ ..+.+...+. +...|..+++|++|+|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 122233333333333444444443333111 12222 1122222222 335789999999999999
Q ss_pred CccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccC
Q 043235 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYAN 313 (515)
Q Consensus 234 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 313 (515)
|+|+++-+.+|.+...++.|.|..|++..+-...|.++..|++|+|++|+|+...|.+|..+.++..+..-.+. +...-
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np-~~CnC 362 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP-FNCNC 362 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc-ccCcc
Confidence 99999999999999999999999999997778899999999999999999999999999888777764332111 00000
Q ss_pred CCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcc---ccccch---------
Q 043235 314 NVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG---EIPWKI--------- 381 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~--------- 381 (515)
.. .+... ++.- +.......-.....++.+.+++..+.+ ..|++.
T Consensus 363 ~l---~wl~~---------Wlr~------------~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP 418 (498)
T KOG4237|consen 363 RL---AWLGE---------WLRK------------KSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP 418 (498)
T ss_pred ch---HHHHH---------HHhh------------CCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCC
Confidence 00 00000 0000 000000000112344555555544431 112211
Q ss_pred hccccCCe-eccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccc
Q 043235 382 GQLQNIRA-LNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447 (515)
Q Consensus 382 ~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 447 (515)
..++-+.+ ..-|+..++ .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++-
T Consensus 419 ~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 419 PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 12333333 334455554 5554442 35568999999999 67776 66778 89999999874
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=8.6e-26 Score=251.20 Aligned_cols=335 Identities=21% Similarity=0.251 Sum_probs=164.8
Q ss_pred CCCCCCccEEeCcCCc------CCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHH
Q 043235 7 NAKYDKLRHLDISSNN------FSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~------l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.++ ..|..| ...+|+.|++++|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4455555555554432 112344444443344555555555555 444444 3455555555555555 454443
Q ss_pred HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+
T Consensus 631 -~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 631 -HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred -ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 445555555555543222332 34555555555555554434455555555555555555543333444433 455555
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCcee-------eeccccccCCCCccEEe
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIK-------GLIPIALLRSSTLLTLD 230 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~-------~~~~~~~~~~~~L~~L~ 230 (515)
.|++++|.....+|.. ..+|+.|++++|.+..++ .+++|++|.+.++... ...+..+...++|+.|+
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 5555555433333321 234555555555554443 2344444444442211 11111112233455555
Q ss_pred ccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCccc
Q 043235 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310 (515)
Q Consensus 231 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~ 310 (515)
+++|.....+|..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-------------------- 843 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-------------------- 843 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--------------------
Confidence 55554444455555555555555555543222334333 345555555555432211111
Q ss_pred ccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCee
Q 043235 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAL 390 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 390 (515)
...+|++|+|++|.++ .+|..+..+++|+.|
T Consensus 844 ------------------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 844 ------------------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred ------------------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence 1345666777777666 556666667777777
Q ss_pred ccCCccccccChhhhcCccCCCeeeCCCCc
Q 043235 391 NLSNNLLSGAIPESFSNLKMIESLDLSRNK 420 (515)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 420 (515)
+|++|.--..+|..+..+++|+.+++++|.
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 776643322455556666667777766664
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.1e-24 Score=242.39 Aligned_cols=341 Identities=22% Similarity=0.238 Sum_probs=263.6
Q ss_pred CchhHHhcccCCcEEECcCCc------ccccCCccccCCC-CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccc
Q 043235 27 LPENLGIIFQKLIYLDMSKNN------FEGNIPYSVGEMK-ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYG 99 (515)
Q Consensus 27 ~p~~~~~~~~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~ 99 (515)
+....+..+++|+.|.+..+. +....|..|..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 445555668999999997653 3334677777764 6999999999998 888765 4789999999999987
Q ss_pred cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccC
Q 043235 100 QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNN 179 (515)
Q Consensus 100 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 179 (515)
..+..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 4567788899999999998765445554 7788999999999987666888899999999999999976555667655 7
Q ss_pred CCCCcEEeCCCCCC-CCcC-CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC-------CcCchhhhcCCCc
Q 043235 180 LKSLEFIDLSENSL-ISLS-NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF-------GRIPHQINERSNL 250 (515)
Q Consensus 180 l~~L~~L~L~~n~l-~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L 250 (515)
+++|+.|++++|.. ..++ ...+|+.|++++|.+..+ |..+ .+++|++|++.++... ...+..+...++|
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 88999999999853 3343 346789999999998765 4333 5678888888774421 1122223345789
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccC
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQL 330 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (515)
+.|+|++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------- 822 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------- 822 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--------------------------------------
Confidence 999999998777888889999999999999886544444321
Q ss_pred ccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccC
Q 043235 331 PVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKM 410 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 410 (515)
.+++|+.|++++|.....+|.. .++|++|+|++|.++ .+|.++..+++
T Consensus 823 ----------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~ 870 (1153)
T PLN03210 823 ----------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSN 870 (1153)
T ss_pred ----------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCC
Confidence 2678999999998665455543 368999999999998 78999999999
Q ss_pred CCeeeCCCCcccccCCccccCCCCCCEEecccCcc
Q 043235 411 IESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNL 445 (515)
Q Consensus 411 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 445 (515)
|+.|+|++|+-...+|..+..++.|+.+++++|.-
T Consensus 871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999999655446888889999999999999863
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=3.8e-23 Score=214.21 Aligned_cols=133 Identities=24% Similarity=0.293 Sum_probs=62.5
Q ss_pred CCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcc
Q 043235 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVS 141 (515)
Q Consensus 62 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 141 (515)
-..|+++++.++ .+|..+. .+|+.|++++|+++. +|. .+++|++|++++|+++. +|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 445566666665 5555442 345556666665553 222 13455555555555552 2321 2445555555
Q ss_pred cCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCC-CCcccEEEcccCceee
Q 043235 142 NNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSN-LSFVKHIYLQNNAIKG 214 (515)
Q Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~-l~~L~~L~L~~n~i~~ 214 (515)
+|.++ .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++..++. ...|+.|++++|.+++
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS 336 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCCcccccccccccCcccc
Confidence 55554 22321 1345555555555552 232 12345555555555544432 1234444444444443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.90 E-value=5.5e-23 Score=213.04 Aligned_cols=172 Identities=24% Similarity=0.246 Sum_probs=85.1
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++.. |.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeecc
Confidence 345555555555 3444443 24555555555555 4543 134555555555555532 221 2455556666
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
+|.++. +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|++..++
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccccc
Confidence 665542 2221 234556666666665 23331 3456666666666663 2321 234566667777666555
Q ss_pred CCC-cccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 198 NLS-FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 198 ~l~-~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
.++ .|+.|++++|+++++ |.. ..+|+.|++++|++.
T Consensus 339 ~lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 339 TLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred ccccccceEecCCCccCCC-CCC---Ccccceehhhccccc
Confidence 332 355555555555443 211 124445555555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=4.9e-21 Score=199.87 Aligned_cols=180 Identities=22% Similarity=0.318 Sum_probs=108.5
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+.+.|+++++.++ .+|..+ .++|+.|+|++|+++ .+|..+. .+|++|++++|+++ .+|..+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEE
Confidence 45677888887777 677655 357788888888777 4555443 47788888888777 677654 2467777
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 78777776 3444442 46777777777776 3454432 467777777777763 343332 35666666666666
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcCC--CCcccEEEcccCcee
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLSN--LSFVKHIYLQNNAIK 213 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~--l~~L~~L~L~~n~i~ 213 (515)
. +|..+ .++|+.|++++|.+..++. .++|+.|++++|+++
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT 359 (754)
T ss_pred c-CCccc--cccceeccccCCccccCChhhcCcccEEECCCCCCC
Confidence 3 33322 2455566666655544431 133444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=8.5e-21 Score=198.11 Aligned_cols=246 Identities=24% Similarity=0.373 Sum_probs=126.0
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEc
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNV 140 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 140 (515)
+...|+++++.++ .+|..+ .++|+.|++++|+++. +|..+. .+|++|++++|+++ .+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 3455555555555 555433 2345555555555553 233222 35555555555555 2333332 24555555
Q ss_pred ccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccc
Q 043235 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++..++ ..+
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP--------------------~~l 302 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLP--------------------AHL 302 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCc--------------------ccc
Confidence 555555 3343332 34555555555555 2333222 24444444444443332 111
Q ss_pred cCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCccccc
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~ 300 (515)
. ++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 303 p--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-------- 365 (754)
T PRK15370 303 P--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-------- 365 (754)
T ss_pred h--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--------
Confidence 1 245666666666653 33322 2456666666666663 444332 56777777777664 222211
Q ss_pred ccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccc
Q 043235 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK 380 (515)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 380 (515)
.+.|++|++++|+++ .+|..
T Consensus 366 -----------------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 366 -----------------------------------------------------------PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred -----------------------------------------------------------cCCcCEEECCCCcCC-CCCHh
Confidence 235666777777776 44544
Q ss_pred hhccccCCeeccCCccccccChhh----hcCccCCCeeeCCCCccc
Q 043235 381 IGQLQNIRALNLSNNLLSGAIPES----FSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 381 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~ 422 (515)
+. ..|+.|++++|++. .+|.. +..++.+..|++.+|.++
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 43 35777777777776 33433 333466777777777776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.7e-20 Score=182.08 Aligned_cols=269 Identities=23% Similarity=0.262 Sum_probs=173.2
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCccccc----CCccccCCCCCCEEECcCCcCcccCch------HHHhCC
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGN----IPYSVGEMKELTILDLSRNNFTGKLPR------PIVSSC 84 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~------~~~~~l 84 (515)
.|+|..+.+++.--..++..+.+|++|+++++.++.. ++..+...+++++|+++++.+. ..+. ..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHHHHHHHHHhc
Confidence 5778888886433334444467899999999888532 4455667788899999888775 2121 234567
Q ss_pred CCCCEEEccCccccccCCccccCCCC---CCEEEcccCCCCC----cCChhhhCC-CCCcEEEcccCcCCCC----cChh
Q 043235 85 LSLDWLDLSNNNFYGQLFPNYMNLTD---LGSLYLDNNHFSG----KMTDGLLSS-TLLRVLNVSNNMLSGD----IPHW 152 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~ 152 (515)
++|++|++++|.+....+..+..+.+ |++|++++|++.+ .....+..+ ++|+.|++++|.+++. .+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 78888888888886555555555554 8888888888763 222344555 7888888888888732 2334
Q ss_pred ccCCCCccEEEccCcccccc----ccccccCCCCCcEEeCCCCCCCC---------cCCCCcccEEEcccCceeeecccc
Q 043235 153 IGNFSVLSVLLMSENYLQGN----IPVQLNNLKSLEFIDLSENSLIS---------LSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 153 ~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~---------l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+.. +..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 56667888888888887732 23344556788888888887642 234566777777777766432222
Q ss_pred cc-----CCCCccEEeccCCccCC----cCchhhhcCCCcCEEEccCccCCCC----CCccccCC-CCCCEEECCCCcC
Q 043235 220 LL-----RSSTLLTLDLRDNKLFG----RIPHQINERSNLHVLLLRGNYLQGR----IPNQLCQL-RKLSIMDLSRNRL 284 (515)
Q Consensus 220 ~~-----~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~i 284 (515)
+. ..+.|++|++++|.++. .+...+..+++|+.+++++|.+++. ....+... +.|+++++.+|++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 21 23577777777777752 1233445556777777777777743 23333344 5677777776653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.9e-20 Score=180.50 Aligned_cols=182 Identities=23% Similarity=0.198 Sum_probs=86.8
Q ss_pred EEEccCcccc-ccCCccccCCCCCCEEEcccCCCCCc----CChhhhCCCCCcEEEcccCcCCC------CcChhccCCC
Q 043235 89 WLDLSNNNFY-GQLFPNYMNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNNMLSG------DIPHWIGNFS 157 (515)
Q Consensus 89 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~ 157 (515)
.|+|..+.++ ......+..+.+|++|+++++.++.. ++..+...+.+++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665 22233345566677777777776432 23344455667777777766552 1123344455
Q ss_pred CccEEEccCccccccccccccCCCC---CcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCC-CCccEEeccC
Q 043235 158 VLSVLLMSENYLQGNIPVQLNNLKS---LEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRS-STLLTLDLRD 233 (515)
Q Consensus 158 ~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~-~~L~~L~Ls~ 233 (515)
+|+.|++++|.+.+..+..+..+.+ |+.|++++|++.... ...+...+..+ ++|+.|++++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~---------------~~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG---------------LRLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH---------------HHHHHHHHHhCCCCceEEEcCC
Confidence 5666666655554333333332222 444444444332100 00111223333 4555555555
Q ss_pred CccCCc----CchhhhcCCCcCEEEccCccCCCC----CCccccCCCCCCEEECCCCcCc
Q 043235 234 NKLFGR----IPHQINERSNLHVLLLRGNYLQGR----IPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 234 n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 555421 222334445555555555555521 1122333445555555555553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=1.5e-20 Score=153.24 Aligned_cols=179 Identities=27% Similarity=0.420 Sum_probs=124.3
Q ss_pred CCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccc
Q 043235 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301 (515)
Q Consensus 222 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~ 301 (515)
.+..++.|.+|+|+++ .+|..+..+.+|+.|++.+|+|+ ..|..++.++.|+.|++.-|++. ..|..|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs------- 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS------- 100 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-------
Confidence 3445666666666665 44555666667777777777766 55666666777777777666664 44554443
Q ss_pred cCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcc-ccccc
Q 043235 302 TDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG-EIPWK 380 (515)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 380 (515)
++.|+.|||++|++.+ ..|..
T Consensus 101 ----------------------------------------------------------~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 101 ----------------------------------------------------------FPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred ----------------------------------------------------------CchhhhhhccccccccccCCcc
Confidence 4556667777766653 45777
Q ss_pred hhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccC---C
Q 043235 381 IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA---T 457 (515)
Q Consensus 381 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~ 457 (515)
|..++.|+.|+|++|.+. .+|..++++++|+.|.++.|.+. .+|..+..++.|+.|++.+|.++-..|+.+++. .
T Consensus 123 ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGN 200 (264)
T ss_pred hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhh
Confidence 777888888888888887 77777888888888888888887 778888888888888888888887777644332 2
Q ss_pred CCcccccCCCCCC
Q 043235 458 FDDCSYKGNSALC 470 (515)
Q Consensus 458 l~~~~~~gn~~~c 470 (515)
-.....+.|||.-
T Consensus 201 k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 201 KQVMRMEENPWVN 213 (264)
T ss_pred HHHHhhhhCCCCC
Confidence 2344667788864
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.5e-19 Score=146.09 Aligned_cols=157 Identities=26% Similarity=0.431 Sum_probs=121.9
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+.+++.|.|++|+++ ..|..+..+.+|+.|++++|+|+ .+|..+ +.+++|++|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 467777888888887 56667778888888888888887 778776 67888888888888775 667788888888888
Q ss_pred EcccCCCC-CcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCC
Q 043235 115 YLDNNHFS-GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 115 ~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 193 (515)
|+.+|.+. ...|..|..+..|+.|+++.|.+. .+|..++++++|+.|.++.|.+. ..|..++.+++|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 88887775 346777777777888888888887 67777888888888888888877 6777788888888888888887
Q ss_pred CCcC
Q 043235 194 ISLS 197 (515)
Q Consensus 194 ~~l~ 197 (515)
+.++
T Consensus 186 ~vlp 189 (264)
T KOG0617|consen 186 TVLP 189 (264)
T ss_pred eecC
Confidence 6554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=5e-13 Score=139.56 Aligned_cols=118 Identities=34% Similarity=0.599 Sum_probs=107.0
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecc
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 441 (515)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCc--ccCCCCcccccCCCCCCCCccCCCCC
Q 043235 442 YNNLSGPIPDKE--QFATFDDCSYKGNSALCGSMIKRKCS 479 (515)
Q Consensus 442 ~N~l~~~~p~~~--~~~~l~~~~~~gn~~~c~~~l~~~~~ 479 (515)
+|+++|.+|... ....+..+.+.||+++|+.+-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999832 23455678899999999877655664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=2.9e-14 Score=137.51 Aligned_cols=192 Identities=30% Similarity=0.381 Sum_probs=164.6
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.+......|++.|++. .+|..+.. |..|+.+.|.+|.+. .+|.+++++..|.+|||+.|+++ .+|..++ .+ -|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cce
Confidence 4556678899999998 99998877 788999999999999 79999999999999999999999 8998873 33 599
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
.|-+++|+++ .+|..++.+..|..|+.+.|.+. ..|..+..+.+|+.|.+..|++. .+|..+..++ |..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence 9999999998 67888899999999999999998 67778899999999999999998 5677677554 9999999999
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCCcC-------CCCcccEEEcccCc
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLISLS-------NLSFVKHIYLQNNA 211 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-------~l~~L~~L~L~~n~ 211 (515)
+. .+|..|.+++.|++|.|.+|.+.+-+ ...-.|+|+.+-++
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99 78999999999999999999996543 22224666666663
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.9e-12 Score=129.26 Aligned_cols=194 Identities=34% Similarity=0.396 Sum_probs=107.6
Q ss_pred EEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC-CCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 40 YLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL-SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 40 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
.+++..+.+. .....+..++.++.|++.+|.++ .++... .... +|+.|++++|.+.. .+..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 3555555553 22333444455666666666665 555543 2232 56666666666642 234455666666666666
Q ss_pred CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC---
Q 043235 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS--- 195 (515)
Q Consensus 119 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--- 195 (515)
|++. ..+......+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc
Confidence 6665 33333335556666666666665 34444444445666666666433 234445556666666666666532
Q ss_pred -cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCch
Q 043235 196 -LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242 (515)
Q Consensus 196 -l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 242 (515)
+..++.+++|++++|.++.+.. ++...+++.|++++|.+....+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 2355556666666666666533 66666777777777776654443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.4e-13 Score=132.84 Aligned_cols=189 Identities=32% Similarity=0.414 Sum_probs=125.3
Q ss_pred EEECcCCcccccCCc-cc-cCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 40 YLDMSKNNFEGNIPY-SV-GEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 40 ~L~L~~n~i~~~~~~-~~-~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
+|.|++-+++. .|. +. ..+.--...|++.|++. .+|..+ ..+..|+.+.|++|.+. .+|..+.++..|.+++++
T Consensus 54 ~l~Ls~rrlk~-fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLKE-FPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhhc-CCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence 44555555552 221 11 33455567788888887 788776 55777888888888876 567778888888888888
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
.|+++ ..|..+..++ |+.|-+++|+++ .+|..++...+|..|+.+.|.+. .+|..++.+.+|+.|.+..|++..++
T Consensus 130 ~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 130 SNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred cchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC
Confidence 88887 6677777766 788888888887 66777777778888888888877 56666777777777777777765443
Q ss_pred -C--CCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 198 -N--LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 198 -~--l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
. .-.|..||++.|++..+ |..|..|..|++|-|.+|.+.
T Consensus 206 ~El~~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 206 EELCSLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHhCCceeeeecccCceeec-chhhhhhhhheeeeeccCCCC
Confidence 1 11244455555555432 444555555555555555553
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.6e-12 Score=125.98 Aligned_cols=198 Identities=32% Similarity=0.463 Sum_probs=156.2
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCC-CCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK-ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
.++++.+.+. .....+.. ++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+ ..+++|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccC
Confidence 5788888775 33334444 468999999999999 5676677774 9999999999998 776554 779999999999
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI 173 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (515)
+|+++. .+......++|+.|++++|+++ .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++. ..
T Consensus 172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 999974 4444558899999999999998 55655555667999999999654 45667888889999999999887 34
Q ss_pred cccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeecccccc
Q 043235 174 PVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALL 221 (515)
Q Consensus 174 ~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~ 221 (515)
+..++.++.++.|++++|.+..+. ....++.|++++|.+....+....
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cchhccccccceeccccccccccccccccCccCEEeccCccccccchhhhc
Confidence 667888889999999999997665 678899999999998877665443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=2.6e-12 Score=110.04 Aligned_cols=104 Identities=37% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCcEEECcCCcccccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc-cCCCCCCEE
Q 043235 37 KLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSL 114 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L 114 (515)
++++|+|++|.|+. + +.++ .+.+|+.|++++|.|+ .++. +..++.|++|++++|+|+... ..+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-C-HHHHHH-TT--EE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEE
Confidence 45666666665552 2 2233 3555666666666655 4442 344555666666666555322 222 245555555
Q ss_pred EcccCCCCCc-CChhhhCCCCCcEEEcccCcCC
Q 043235 115 YLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 115 ~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
++++|+|... ....+..+++|+.|++.+|+++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555555422 1133445555555555555554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.26 E-value=6.4e-12 Score=107.68 Aligned_cols=129 Identities=28% Similarity=0.316 Sum_probs=54.7
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
.+..+++.|+|.+|.|+ .+. .+...+.+|+.|++++|.|+.. +.+..+++|++|++++|.|+ .+...+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 45667899999999998 554 4554468999999999999943 35888999999999999999 7876665679999
Q ss_pred CEEEccCccccccC-CccccCCCCCCEEEcccCCCCCcCC---hhhhCCCCCcEEEcc
Q 043235 88 DWLDLSNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKMT---DGLLSSTLLRVLNVS 141 (515)
Q Consensus 88 ~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~ 141 (515)
++|++++|+|.... ...+..+++|++|++.+|.++.... ..+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999999997532 2457789999999999999973311 245667888888754
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.1e-13 Score=123.49 Aligned_cols=201 Identities=23% Similarity=0.192 Sum_probs=102.7
Q ss_pred ccCCcEEECcCCcccccCC--ccccCCCCCCEEECcCCcCcccCc--hHHHhCCCCCCEEEccCccccccCCcc-ccCCC
Q 043235 35 FQKLIYLDMSKNNFEGNIP--YSVGEMKELTILDLSRNNFTGKLP--RPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLT 109 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~l~--~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~ 109 (515)
+++|+.+.|.++.+. ..+ .....|++++.|||++|-+. ... ..+...+++|+.|+++.|++....... -..++
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455666666666555 222 24455666666666666544 211 233345666666666666654211111 12345
Q ss_pred CCCEEEcccCCCCCcCCh-hhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc-cccccCCCCCcEEe
Q 043235 110 DLGSLYLDNNHFSGKMTD-GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI-PVQLNNLKSLEFID 187 (515)
Q Consensus 110 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ 187 (515)
.|+.|.++.|.++..... ....+++|+.|++..|............+..|++|+|++|.+.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 566666666666522211 2234566666666666322122222333455666666666655221 02245566666666
Q ss_pred CCCCCCCCcC-----------CCCcccEEEcccCceeeec-cccccCCCCccEEeccCCccC
Q 043235 188 LSENSLISLS-----------NLSFVKHIYLQNNAIKGLI-PIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 188 L~~n~l~~l~-----------~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
++.+.++++. .+++|++|++..|+|.... -..+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666664432 3456777777777764321 122334556667777777765
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.3e-12 Score=120.88 Aligned_cols=204 Identities=22% Similarity=0.222 Sum_probs=126.7
Q ss_pred cCCCCCCEEECcCCcCcccCch-HHHhCCCCCCEEEccCcccccc--CCccccCCCCCCEEEcccCCCCCcCCh-hhhCC
Q 043235 57 GEMKELTILDLSRNNFTGKLPR-PIVSSCLSLDWLDLSNNNFYGQ--LFPNYMNLTDLGSLYLDNNHFSGKMTD-GLLSS 132 (515)
Q Consensus 57 ~~l~~L~~L~L~~n~l~~~l~~-~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l 132 (515)
+++.+|+...|.++.+. ..+. .....|++++.|||++|-+... .......+++|+.|+++.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46788999999988876 4442 3456789999999999877531 122345788999999999987632211 11256
Q ss_pred CCCcEEEcccCcCCCCcCh-hccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC------CCCcccEE
Q 043235 133 TLLRVLNVSNNMLSGDIPH-WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHI 205 (515)
Q Consensus 133 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~------~l~~L~~L 205 (515)
++|+.|.++.|.++...-. ....+++|+.|++..|...........-+..|+.|||++|.+..+. .++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7788888888888743222 2356788888888888533233334455677888888888875543 56667777
Q ss_pred EcccCceeeecccc------ccCCCCccEEeccCCccCCc-CchhhhcCCCcCEEEccCccCC
Q 043235 206 YLQNNAIKGLIPIA------LLRSSTLLTLDLRDNKLFGR-IPHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 206 ~L~~n~i~~~~~~~------~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~ 261 (515)
+++.+.++++.-.. ...+++|++|+++.|+|... ....+..+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777766542111 13345566666666655311 1122333444555555555444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=3.5e-12 Score=116.42 Aligned_cols=241 Identities=25% Similarity=0.312 Sum_probs=115.0
Q ss_pred CCCCccEEeCcCCcCCCC----CchhHHhcccCCcEEECcCC---cccccCC-------ccccCCCCCCEEECcCCcCcc
Q 043235 9 KYDKLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKN---NFEGNIP-------YSVGEMKELTILDLSRNNFTG 74 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n---~i~~~~~-------~~~~~l~~L~~L~L~~n~l~~ 74 (515)
.+..++.+++|+|.+... +...+.. -++|+..+++.- +....+| .++..+++|++|+||+|.+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~-~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLAS-KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhh-cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 455667777777766422 1222222 345666666542 1111222 233455667777777776542
Q ss_pred cCch---HHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCc--
Q 043235 75 KLPR---PIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDI-- 149 (515)
Q Consensus 75 ~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 149 (515)
.-+. .+++++..|++|.|.+|.+.......++. .|..|. .......-+.|+++...+|++....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence 2222 23455666666666666654211111110 000000 0000112234444444444443211
Q ss_pred --ChhccCCCCccEEEccCcccccc----ccccccCCCCCcEEeCCCCCCC---------CcCCCCcccEEEcccCceee
Q 043235 150 --PHWIGNFSVLSVLLMSENYLQGN----IPVQLNNLKSLEFIDLSENSLI---------SLSNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 150 --~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~---------~l~~l~~L~~L~L~~n~i~~ 214 (515)
...|...+.|+.+.+..|.|... ....+..+++|+.|||.+|-++ .++..++|+.|++++|.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 12233344455555555544311 1223445555555555555542 22344555666666665544
Q ss_pred eccccc-----cCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccCccCC
Q 043235 215 LIPIAL-----LRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 215 ~~~~~~-----~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 261 (515)
-...++ ...+.|+.|.+.+|.|+.. +...+...+.|..|+|++|.+.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 322222 2356788888888887632 2233445678888888888884
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=6.7e-12 Score=114.64 Aligned_cols=240 Identities=26% Similarity=0.293 Sum_probs=152.9
Q ss_pred ccCCcEEECcCCcccc----cCCccccCCCCCCEEECcCCc---CcccCchH------HHhCCCCCCEEEccCccccccC
Q 043235 35 FQKLIYLDMSKNNFEG----NIPYSVGEMKELTILDLSRNN---FTGKLPRP------IVSSCLSLDWLDLSNNNFYGQL 101 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~---l~~~l~~~------~~~~l~~L~~L~L~~n~i~~~~ 101 (515)
+..+++++|++|.+.. .+...+.+.++|+..++++-- ....+|.. .+.++++|++||||+|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4678888888887763 223445666788888877542 11133332 1234556666666666554322
Q ss_pred Ccc----ccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc----
Q 043235 102 FPN----YMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI---- 173 (515)
Q Consensus 102 ~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---- 173 (515)
+.. +..+..|++|+|.+|.+.-..-..++. .|..|. .+ .....-+.|+.+...+|++....
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHH
Confidence 222 233445555555555443111111110 112211 11 12334578999999999987432
Q ss_pred cccccCCCCCcEEeCCCCCCC---------CcCCCCcccEEEcccCceeee----ccccccCCCCccEEeccCCccCCcC
Q 043235 174 PVQLNNLKSLEFIDLSENSLI---------SLSNLSFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLFGRI 240 (515)
Q Consensus 174 ~~~l~~l~~L~~L~L~~n~l~---------~l~~l~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~Ls~n~i~~~~ 240 (515)
...|...+.|+.+.+..|.|. .+..+++|+.|+|++|-++.. ....+..+++|+.|++++|.+....
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 344667789999999999983 234789999999999998753 3445677889999999999997654
Q ss_pred chhh-----hcCCCcCEEEccCccCCCCC----CccccCCCCCCEEECCCCcCc
Q 043235 241 PHQI-----NERSNLHVLLLRGNYLQGRI----PNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 241 ~~~~-----~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~ 285 (515)
...| ...++|+.|.+.+|.|+... .......+.|..|+|++|++.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4443 23689999999999998422 223445789999999999994
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=7.4e-12 Score=111.85 Aligned_cols=128 Identities=23% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 156 FSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 156 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
...|+++++++|.|+ .+..+..-.+.++.|++++|.+..+. .+++|..|+|++|.++.. ..+-..+-++++|.|+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehh
Confidence 345666666666666 44455555666666666666664443 455666677777766653 3344456677888888
Q ss_pred CCccCCcCchhhhcCCCcCEEEccCccCCCCC-CccccCCCCCCEEECCCCcCcCC
Q 043235 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRI-PNQLCQLRKLSIMDLSRNRLNGP 287 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~ 287 (515)
+|.|. ....+.++-+|..||+++|+|.... ...+++++.|+++.|.+|++.+.
T Consensus 361 ~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88773 3345677778888888888877322 24567788888888888888643
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.15 E-value=4.7e-12 Score=126.67 Aligned_cols=264 Identities=25% Similarity=0.244 Sum_probs=163.4
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
.+.++.++...+.+. ..... ...+..++.++++.|.+. ..-..+..+.+|+.|++.+|+|. .+... ...+++|++
T Consensus 48 ~~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~ 122 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQV 122 (414)
T ss_pred cchhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccc-hhhhhcchh
Confidence 344455555555443 11111 112456777777777777 33445677788888888888887 55432 255778888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcC-hhccCCCCccEEEccCcc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 168 (515)
|++++|.|+.. ..+..++.|+.|++++|.|+.. ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.
T Consensus 123 L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 123 LDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred eeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 88888888653 4566667788888888887632 345557778888888887774433 1 4667777777888777
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCCcCCCCc-----ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~-----L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
+... ..+..+..+..+++..|.+..+..+.. |+.+++++|.+.... ..+..+..+..+++.+|++... ..
T Consensus 198 i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 198 IREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred hhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--cc
Confidence 7632 334445555556777777766654332 677778877776542 4455666777778877777533 23
Q ss_pred hhcCCCcCEEEccCccCCCC---CCc-cccCCCCCCEEECCCCcCcCCC
Q 043235 244 INERSNLHVLLLRGNYLQGR---IPN-QLCQLRKLSIMDLSRNRLNGPI 288 (515)
Q Consensus 244 ~~~l~~L~~L~L~~n~i~~~---~~~-~~~~l~~L~~L~L~~n~i~~~~ 288 (515)
+.....+..+....|++... ... .....+.++.+.+..|++....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 44455566666666665521 111 1345567777777777765433
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=9.7e-12 Score=111.13 Aligned_cols=127 Identities=24% Similarity=0.258 Sum_probs=90.6
Q ss_pred CCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeC
Q 043235 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDL 188 (515)
Q Consensus 109 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 188 (515)
..|+++||++|.|+ .+.+...-.+.++.|++++|.+..+ +.++.+++|+.|++++|.++ ....+-..+.+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 35777888888777 4555666677788888888877633 33677778888888888777 34444556777788888
Q ss_pred CCCCCCCcC---CCCcccEEEcccCceeeec-cccccCCCCccEEeccCCccCCc
Q 043235 189 SENSLISLS---NLSFVKHIYLQNNAIKGLI-PIALLRSSTLLTLDLRDNKLFGR 239 (515)
Q Consensus 189 ~~n~l~~l~---~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~Ls~n~i~~~ 239 (515)
++|.+.+++ .+-+|..|++++|+|.... ...+++++.|+.+.|.+|.+.+.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888776665 4556777888888876542 24677888899999999988643
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.11 E-value=7.9e-12 Score=125.06 Aligned_cols=222 Identities=26% Similarity=0.315 Sum_probs=119.0
Q ss_pred ccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEE
Q 043235 153 IGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTL 229 (515)
Q Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 229 (515)
+..+.+++.|++.+|.+... ...+..+++|+.|++++|.|..+. .++.|+.|++++|.|+.+ ..+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence 34444444455555444422 111344555555555555554333 333355555555555543 233335566666
Q ss_pred eccCCccCCcCc-hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCc
Q 043235 230 DLRDNKLFGRIP-HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE 308 (515)
Q Consensus 230 ~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~ 308 (515)
++++|+++..-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..-+.
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l------------------ 226 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL------------------ 226 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc------------------
Confidence 666666653332 1 34555666666666666522 2333344444445566655421110
Q ss_pred ccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc--cCCEEEcCCCcCccccccchhcccc
Q 043235 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN--YMAGLDLSGNEFSGEIPWKIGQLQN 386 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~ 386 (515)
..+. +|+.+++++|++. ..+..+..+..
T Consensus 227 -------------------------------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~ 256 (414)
T KOG0531|consen 227 -------------------------------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKN 256 (414)
T ss_pred -------------------------------------------------ccchhHHHHHHhcccCccc-ccccccccccc
Confidence 0011 3667777777777 33355666777
Q ss_pred CCeeccCCccccccChhhhcCccCCCeeeCCCCccccc---CCcc-ccCCCCCCEEecccCcccccCC
Q 043235 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ---IPPQ-LTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+..|++++|++... ..+...+.+..+....|.+... .... ....+.++.+.+.+|+.....+
T Consensus 257 l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 257 LPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 88888888877632 2345566777777777776522 1121 4556777888888888776555
No 38
>PLN03150 hypothetical protein; Provisional
Probab=99.09 E-value=1.9e-10 Score=120.44 Aligned_cols=92 Identities=35% Similarity=0.569 Sum_probs=84.1
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCC-CCCCEE
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTEL-NFLSNF 438 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L 438 (515)
+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+|++|++++.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred ecccCcccccCCC
Q 043235 439 NVSYNNLSGPIPD 451 (515)
Q Consensus 439 ~Ls~N~l~~~~p~ 451 (515)
++++|+..+-.|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999987665554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.3e-10 Score=124.15 Aligned_cols=129 Identities=26% Similarity=0.253 Sum_probs=84.2
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCCc--CcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN--FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
...+.+.+-+|.+. .++.+. .+++|++|-+.+|. +. .++..+|..++.|+.|||++|.--+..|..++.+.+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 45666666666665 333332 23467777777775 44 666666777777777777766555566777777777777
Q ss_pred EEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 114 LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 114 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
|++++..+. .+|..+.+++.|.+|++..+.-...+|.....+++|++|.+..-.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 777777776 567777777777777777665544445555557777777765543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-10 Score=123.54 Aligned_cols=270 Identities=22% Similarity=0.211 Sum_probs=142.8
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCc--ccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNN--FEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
.+...+.+.+.+|.+. .++.... .+.|++|-+..|. +.......|..++.|++|||++|.--+.+|..+ +.+.+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVH 596 (889)
T ss_pred chhheeEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhh
Confidence 3456677777777765 5555543 3467777777774 443444446677777777777664334677766 66777
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCC--CCcChhccCCCCccEEEc
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS--GDIPHWIGNFSVLSVLLM 164 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l 164 (515)
||+|++++..+. ..|..++++..|.+|++..+.-....+.....+.+|++|.+...... ...-..+..+.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 777777777776 56677777777777777766654444555556777777777654421 111122334444444444
Q ss_pred cCccccccccccccCCCCCc----EEeCCCCCC----CCcCCCCcccEEEcccCceeeeccccccC------CCCccEEe
Q 043235 165 SENYLQGNIPVQLNNLKSLE----FIDLSENSL----ISLSNLSFVKHIYLQNNAIKGLIPIALLR------SSTLLTLD 230 (515)
Q Consensus 165 ~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l----~~l~~l~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~ 230 (515)
..... .+-..+..+..|. .+.+.++.. ..+..+..|+.|.+.++.+.......... ++++..+.
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 32221 0001111222221 222222221 23335666777777776665432222111 11222222
Q ss_pred ccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 231 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
..++... ..+.+....++|+.|.+..+...+.+......+..++.+.+..+.+.+
T Consensus 754 ~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 754 ILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 2222221 223333445677777777776665555555555666655555555543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=1.5e-10 Score=81.58 Aligned_cols=60 Identities=45% Similarity=0.639 Sum_probs=34.5
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcc
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNL 445 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 445 (515)
+|++|++++|+++.+.+++|.++++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544455555556666666666665555555556666666666665553
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=2.2e-10 Score=80.79 Aligned_cols=61 Identities=41% Similarity=0.573 Sum_probs=57.1
Q ss_pred ccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcc
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL 421 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 421 (515)
|+|++|++++|+++...+..|.++++|++|++++|+++...+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977778899999999999999999988899999999999999999986
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2e-09 Score=96.49 Aligned_cols=157 Identities=23% Similarity=0.255 Sum_probs=74.4
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCc-CcccCchHHHhCCCCCCEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L 90 (515)
+|++||||+..|+..--..+...+.+|+.|.|.++.+.+.+...+.+-.+|+.|+|+.+. ++..--.-++.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 356666666665532222333335566666666666665555555666666666666553 3322223345556666666
Q ss_pred EccCccccccCCcc-ccC-CCCCCEEEcccCCCC---CcCChhhhCCCCCcEEEcccCc-CCCCcChhccCCCCccEEEc
Q 043235 91 DLSNNNFYGQLFPN-YMN-LTDLGSLYLDNNHFS---GKMTDGLLSSTLLRVLNVSNNM-LSGDIPHWIGNFSVLSVLLM 164 (515)
Q Consensus 91 ~L~~n~i~~~~~~~-~~~-l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 164 (515)
+++.|.+....... +.. -++|+.|+++++.-. ..+..-...+++|.+|||+.|. ++...-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66666554322111 111 134555555554311 0011112345555556655543 22222223444555555555
Q ss_pred cCcc
Q 043235 165 SENY 168 (515)
Q Consensus 165 ~~n~ 168 (515)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=1.7e-09 Score=107.86 Aligned_cols=122 Identities=30% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEcc
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (515)
.|...+.+.|.+. .....+.-++.|+.|+|++|+++.. +.+..+++|++|||+.|.+..+..-....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3445555566554 2334455556666666666666532 3556666666666666666532222222222 6666666
Q ss_pred CccccccccccccCCCCCcEEeCCCCCCCCcC------CCCcccEEEcccCcee
Q 043235 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQNNAIK 213 (515)
Q Consensus 166 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~------~l~~L~~L~L~~n~i~ 213 (515)
+|.++.. ..+.++.+|+.||+++|-+.... .+..|+.|+|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666532 23556666666666666554333 3344566666666543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=6e-08 Score=87.16 Aligned_cols=205 Identities=19% Similarity=0.118 Sum_probs=100.8
Q ss_pred cCCCCCCEEECcCCcCcccCc-hHHHhCCCCCCEEEccCccccc--cCCccccCCCCCCEEEcccCCCCCcCChhhhCCC
Q 043235 57 GEMKELTILDLSRNNFTGKLP-RPIVSSCLSLDWLDLSNNNFYG--QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSST 133 (515)
Q Consensus 57 ~~l~~L~~L~L~~n~l~~~l~-~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 133 (515)
....-++.|.+.++.|...-. ..+...++.++.+||.+|.|+. .+...+.++|.|++|+++.|++...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 334455566666666652111 1223446677778888887752 2223356777777788877777633222113456
Q ss_pred CCcEEEcccCcCCCCc-ChhccCCCCccEEEccCccccccc--cccccCC-CCCcEEeCCCCCCCCc-------CCCCcc
Q 043235 134 LLRVLNVSNNMLSGDI-PHWIGNFSVLSVLLMSENYLQGNI--PVQLNNL-KSLEFIDLSENSLISL-------SNLSFV 202 (515)
Q Consensus 134 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l-~~L~~L~L~~n~l~~l-------~~l~~L 202 (515)
+|++|-|.+..+...- ...+..++.+++|+++.|.+.... ....... +.+++|....|....+ .-++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 7777777776664322 223455667777777776433111 1111111 1334444433332111 123444
Q ss_pred cEEEcccCceeeec-cccccCCCCccEEeccCCccCCc-CchhhhcCCCcCEEEccCccCC
Q 043235 203 KHIYLQNNAIKGLI-PIALLRSSTLLTLDLRDNKLFGR-IPHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 203 ~~L~L~~n~i~~~~-~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~ 261 (515)
..+.+..|.+.... ...+..++.+-.|+|+.|+|..- ..+.+.++++|..|.++++.+.
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 44455555443321 12333344444555555555321 1234445555555555555554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1e-08 Score=92.00 Aligned_cols=222 Identities=21% Similarity=0.246 Sum_probs=129.3
Q ss_pred cEEeCcCCcCCCCCchhHHhc-ccCCcEEECcCCccccc-CCccccCC-CCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 14 RHLDISSNNFSGKLPENLGII-FQKLIYLDMSKNNFEGN-IPYSVGEM-KELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~-~~~L~~L~L~~n~i~~~-~~~~~~~l-~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
+.+|+.+-+|. |...... -....++.+....+... ..+.+.-. ..|++|||+...|+..--..+++.|.+|+.|
T Consensus 139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 56788877776 3333321 13456666665444321 11222222 3588899988888744445566778888888
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCC-CCCc-CChhhhCCCCCcEEEcccCcCCCCcChh-ccC-CCCccEEEccC
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHW-IGN-FSVLSVLLMSE 166 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~-l~~L~~L~l~~ 166 (515)
.+.++++.+.+...++.-.+|+.|+++.+. ++.. ..-.+.+++.|..|+++.|.+....... +.. -++|+.|++++
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence 888888887777778888888888888764 3211 1123467788888888888765332211 111 14577777777
Q ss_pred cccc---ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 167 NYLQ---GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 167 n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
++-. ..+..-...+++|..|||++|-. ++......|.+++.|++|.++.|.. ++|..
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~------------------l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~ 355 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVM------------------LKNDCFQEFFKFNYLQHLSLSRCYD--IIPET 355 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccc------------------cCchHHHHHHhcchheeeehhhhcC--CChHH
Confidence 6432 01111123566666666666532 2222233455566677777766653 44443
Q ss_pred ---hhcCCCcCEEEccCc
Q 043235 244 ---INERSNLHVLLLRGN 258 (515)
Q Consensus 244 ---~~~l~~L~~L~L~~n 258 (515)
+...++|.+|+..++
T Consensus 356 ~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 356 LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccCcceEEEEeccc
Confidence 344566777776654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=4.8e-09 Score=104.76 Aligned_cols=129 Identities=29% Similarity=0.365 Sum_probs=89.6
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+..|.+.++++|.+. .+...+. .++.|+.|+|++|+++.. +.+..+++|++|||++|.+. .+|.--..++. |+.
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-hee
Confidence 556777788888876 5555554 367888888888888743 36778888888888888887 77753333444 888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCC
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
|.+++|.++. ...+.++.+|+.||+++|-+.+. ....++.+..|+.|.|.||.+-
T Consensus 237 L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888887764 35677788888888888876532 1223455667778888887764
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=1.2e-07 Score=84.11 Aligned_cols=184 Identities=20% Similarity=0.192 Sum_probs=96.9
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhc---ccCCcEEECcCCcc---ccc-------CCccccCCCCCCEEECcCCcCcccC
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGII---FQKLIYLDMSKNNF---EGN-------IPYSVGEMKELTILDLSRNNFTGKL 76 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~---~~~L~~L~L~~n~i---~~~-------~~~~~~~l~~L~~L~L~~n~l~~~l 76 (515)
+..++.+|||+|.|...-...+... -.+|+..+++.-.. ... ...++-+|++|+..+||+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5667778888887753322222221 24566666654311 111 1234556777888888887765444
Q ss_pred chH---HHhCCCCCCEEEccCccccccCCccc-------------cCCCCCCEEEcccCCCCCcCC----hhhhCCCCCc
Q 043235 77 PRP---IVSSCLSLDWLDLSNNNFYGQLFPNY-------------MNLTDLGSLYLDNNHFSGKMT----DGLLSSTLLR 136 (515)
Q Consensus 77 ~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~-------------~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~ 136 (515)
|.. +.++-+.|.+|.+++|.+.-..-..+ .+-|.|++.....|++..-.. ..+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 432 33556677777777776632111111 234567777777776652211 1223334666
Q ss_pred EEEcccCcCCCCcC-----hhccCCCCccEEEccCcccccc----ccccccCCCCCcEEeCCCCCC
Q 043235 137 VLNVSNNMLSGDIP-----HWIGNFSVLSVLLMSENYLQGN----IPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 137 ~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 193 (515)
++.+..|.|..... ..+..+.+|+.|++..|.++.. ....+..++.|+.|.+..|-+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 66666666542211 1123455666666666665522 223344455566666666654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.1e-07 Score=83.78 Aligned_cols=203 Identities=21% Similarity=0.193 Sum_probs=109.6
Q ss_pred CcccEEEcccCceeee--ccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCC-CCCccccCCCCCCE
Q 043235 200 SFVKHIYLQNNAIKGL--IPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSI 276 (515)
Q Consensus 200 ~~L~~L~L~~n~i~~~--~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~ 276 (515)
+.++.++|.+|.|+.. +...+.+++.|++|+++.|++...+-..-....+|+.|.|.+..+.= .....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3345555555555432 22345667777777777777754332211345677777777766541 22334556677777
Q ss_pred EECCCCcCcCCC--CccccCCc-ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccc
Q 043235 277 MDLSRNRLNGPI--PSCLGNVP-FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353 (515)
Q Consensus 277 L~L~~n~i~~~~--p~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
|+++.|...... ..+..... .+..+....+.. . .+...
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-------------------------~----------~w~~~---- 191 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-------------------------Q----------LWLNK---- 191 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHH-------------------------H----------HHHHH----
Confidence 777777442110 00000000 000000000000 0 00000
Q ss_pred cccccccccCCEEEcCCCcCcccc-ccchhccccCCeeccCCcccccc-ChhhhcCccCCCeeeCCCCcccccCCc----
Q 043235 354 FFIGSNLNYMAGLDLSGNEFSGEI-PWKIGQLQNIRALNLSNNLLSGA-IPESFSNLKMIESLDLSRNKLSGQIPP---- 427 (515)
Q Consensus 354 ~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---- 427 (515)
.-.+..++++..+-+..|.+.... -..+..++.+.-|+|+.|+|... .-+++.+++.|..|.+++|.+.+.+..
T Consensus 192 ~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err 271 (418)
T KOG2982|consen 192 NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERR 271 (418)
T ss_pred HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcce
Confidence 001134788888888888776432 23356677778899999988632 346778889999999999988744322
Q ss_pred --cccCCCCCCEEecc
Q 043235 428 --QLTELNFLSNFNVS 441 (515)
Q Consensus 428 --~l~~l~~L~~L~Ls 441 (515)
.++.+++++.|+=+
T Consensus 272 ~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 272 FLLIARLTKVQVLNGS 287 (418)
T ss_pred EEEEeeccceEEecCc
Confidence 25667777777654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=3.2e-08 Score=78.64 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=73.5
Q ss_pred CCcEEECcCCcccccCCcc---ccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 37 KLIYLDMSKNNFEGNIPYS---VGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
.+..++|+.|.+- .++++ +....+|+..+|++|.+. .+|..+-...+.++.|++++|.|+ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4566777777665 33433 344566667778888777 777777666667777788877776 45566777777777
Q ss_pred EEcccCCCCCcCChhhhCCCCCcEEEcccCcCC
Q 043235 114 LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 114 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
|+++.|.+. ..|..+..+.++.+|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 777777776 56666666777777777777665
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.27 E-value=1.5e-06 Score=74.05 Aligned_cols=104 Identities=23% Similarity=0.182 Sum_probs=51.8
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcC-ChhhhCCCCCcEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM-TDGLLSSTLLRVL 138 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L 138 (515)
.+...+||++|.+. .++. |..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|.|.... .+.+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34555666666554 4433 445556666666666665544443344555666666666554211 1234445556666
Q ss_pred EcccCcCCCCcC---hhccCCCCccEEEccC
Q 043235 139 NVSNNMLSGDIP---HWIGNFSVLSVLLMSE 166 (515)
Q Consensus 139 ~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 166 (515)
.+-+|.++..-- ..+..+++|+.||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 665555542211 1234445555555443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=2e-07 Score=74.17 Aligned_cols=134 Identities=22% Similarity=0.290 Sum_probs=92.7
Q ss_pred CccEEeCcCCcCCCCCchhHHhcc--cCCcEEECcCCcccccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIF--QKLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.+-.+||+.+.+- .+++...... .+|...+|++|.+. ..|..|. ..+.++.|++++|.|. .+|.+ +..++.|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALR 103 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhh
Confidence 3556788888775 5666555422 35666789999888 4565554 4568889999999998 88888 47788999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcCh
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPH 151 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 151 (515)
.|+++.|.+. ..|..+..+.++-.|+..+|.+..+..+ +......-..++.++.+.+..+.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCcc
Confidence 9999999886 4567777788888888888887744333 33333333444556666554443
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=1.3e-06 Score=77.75 Aligned_cols=218 Identities=23% Similarity=0.221 Sum_probs=110.2
Q ss_pred CCCCCCEEECcCCcCcccCchHH---HhCCCCCCEEEccCcccc---c-------cCCccccCCCCCCEEEcccCCCCCc
Q 043235 58 EMKELTILDLSRNNFTGKLPRPI---VSSCLSLDWLDLSNNNFY---G-------QLFPNYMNLTDLGSLYLDNNHFSGK 124 (515)
Q Consensus 58 ~l~~L~~L~L~~n~l~~~l~~~~---~~~l~~L~~L~L~~n~i~---~-------~~~~~~~~l~~L~~L~L~~n~i~~~ 124 (515)
.+..++.++||+|.|...-...+ ..+-.+|+..+++.--.. . ....++.+||+|+..+|+.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35667777777776653222221 122345555555532110 1 1112334455555555555555433
Q ss_pred CCh----hhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---
Q 043235 125 MTD----GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--- 197 (515)
Q Consensus 125 ~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--- 197 (515)
.|. .+++.+.|++|.+++|.+....-..+++ .|.+ +..| .-...-+.|+......|++...+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCcHHH
Confidence 332 2234445555555555443211111110 0000 0000 11234466777777777774432
Q ss_pred ------CCCcccEEEcccCceeee-----ccccccCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccCccCCC
Q 043235 198 ------NLSFVKHIYLQNNAIKGL-----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 198 ------~l~~L~~L~L~~n~i~~~-----~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
....|+.+.+..|.|... ....+..+.+|+.|||.+|-++-. ....+...+.|+.|.+.+|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 234677777777776532 112234467888888888877532 23344555677888888887764
Q ss_pred CCCccc------cCCCCCCEEECCCCcCcC
Q 043235 263 RIPNQL------CQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 263 ~~~~~~------~~l~~L~~L~L~~n~i~~ 286 (515)
.....+ ...++|..|-..+|.+.+
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 433222 134677778777776654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=5.5e-06 Score=70.69 Aligned_cols=127 Identities=22% Similarity=0.222 Sum_probs=97.4
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
=+.+++.+.++. .+ ..++....+...+||++|.+. ....|..++.|.+|.|.+|.|+ .+...+...+++|..|.|
T Consensus 21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccc-ch-hhccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 466777777765 22 235555668889999999997 3356888999999999999999 888887777889999999
Q ss_pred cCccccccC-CccccCCCCCCEEEcccCCCCCcC---ChhhhCCCCCcEEEcccCc
Q 043235 93 SNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKM---TDGLLSSTLLRVLNVSNNM 144 (515)
Q Consensus 93 ~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~l~~n~ 144 (515)
.+|.|.... ...+..+++|++|.+-+|.++... .-.+..+++|+.||..+-.
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999986322 234678899999999999887321 1245678999999988643
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=3.4e-06 Score=54.28 Aligned_cols=36 Identities=31% Similarity=0.525 Sum_probs=15.6
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 73 (515)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=2.8e-06 Score=54.64 Aligned_cols=35 Identities=43% Similarity=0.702 Sum_probs=13.7
Q ss_pred CCeeccCCccccccChhhhcCccCCCeeeCCCCccc
Q 043235 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
|++|++++|+|+ .+|..+.++++|++|++++|+|+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 22323444444444444444443
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.01 E-value=1.1e-05 Score=66.57 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=44.0
Q ss_pred HHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCC
Q 043235 31 LGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTD 110 (515)
Q Consensus 31 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 110 (515)
.+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|.++.+++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 333344555555543 244344445555555555555543 44 44455555555555555543 333233344555555
Q ss_pred CCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 111 LGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 111 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
|+.+.+..+ +.......|... .|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555443 333334444444 555555544 3332334444444443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=2.4e-05 Score=75.74 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCc
Q 043235 199 LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGN 258 (515)
Q Consensus 199 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 258 (515)
+..+++|++++|.++.+ | .+ ..+|++|.++++.-....|..+. ++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 45566666666666554 2 11 13466666665433234444332 35666666666
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.95 E-value=1.3e-05 Score=66.03 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=42.9
Q ss_pred ccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCC
Q 043235 54 YSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSST 133 (515)
Q Consensus 54 ~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 133 (515)
.+|.++.+|+.+.+.. .+. .++...|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 3445555555555543 343 444444555555555555443 4333334455554555555543 22223334444455
Q ss_pred CCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCC
Q 043235 134 LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183 (515)
Q Consensus 134 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 183 (515)
+|+.+++..+ +.......|.+. +++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555555443 332333344444 555555443 2222333344444433
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=6.5e-05 Score=72.86 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=29.7
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccC
Q 043235 83 SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNN 143 (515)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 143 (515)
.+.++++|++++|.++.. |. -..+|++|.++++.--...|+.+ ..+|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 356777777777766532 31 12356777776643222444433 245666666665
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=9.1e-06 Score=85.33 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=62.5
Q ss_pred CCcEEECcCCccc-ccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 37 KLIYLDMSKNNFE-GNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 37 ~L~~L~L~~n~i~-~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+|++|++++...- ...|..++ .+|.|++|.+++-.+...--..+..++++|..||+|+++++.. .+++++++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 4555555553321 11222222 3455555555554443111123334555566666666555432 445555555555
Q ss_pred EcccCCCCC-cCChhhhCCCCCcEEEcccCcCCCCc------ChhccCCCCccEEEccCccccc
Q 043235 115 YLDNNHFSG-KMTDGLLSSTLLRVLNVSNNMLSGDI------PHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 115 ~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
.+.+=.+.. .....+..+++|+.||+|........ -+.-..+|+|+.||.++..+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 555544432 12234445566666666654433111 0111235666666666665553
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2.1e-05 Score=82.72 Aligned_cols=178 Identities=20% Similarity=0.178 Sum_probs=115.9
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCccc-----cc--------CCccc--cCCCCCCEEECcCCcCc-cc
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE-----GN--------IPYSV--GEMKELTILDLSRNNFT-GK 75 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~-----~~--------~~~~~--~~l~~L~~L~L~~n~l~-~~ 75 (515)
++..+++.+.... ........ -..|+.+.|++-... .. .-..+ ..-.+|++|++++...- ..
T Consensus 61 ~ltki~l~~~~~~-~~~~~~l~-~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQ-HQTLEMLR-KQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecc-hhHHHHHh-hccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4566666666655 23333333 234888888763211 00 00111 12367999999887532 23
Q ss_pred CchHHHhCCCCCCEEEccCcccccc-CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCC-CcChhc
Q 043235 76 LPRPIVSSCLSLDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSG-DIPHWI 153 (515)
Q Consensus 76 l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 153 (515)
-|..+...+|+|+.|.+++-.+... ......++++|..||+++..++.. .+++.+++|+.|.+.+-.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 4556666789999999988766432 123356789999999999999854 778899999999988877653 112356
Q ss_pred cCCCCccEEEccCccccccc------cccccCCCCCcEEeCCCCCC
Q 043235 154 GNFSVLSVLLMSENYLQGNI------PVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 154 ~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l 193 (515)
.++++|+.||+|..+..... -+.-..+++|+.||.|+..+
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 78999999999987654221 12223588999999998877
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.52 E-value=6.2e-06 Score=77.99 Aligned_cols=271 Identities=17% Similarity=0.100 Sum_probs=163.6
Q ss_pred CccEEeCcCCcCCC-CCchhHHhcccCCcEEECcCCc-ccccCCcc-ccCCCCCCEEECcCC-cCcccCchHHHhCCCCC
Q 043235 12 KLRHLDISSNNFSG-KLPENLGIIFQKLIYLDMSKNN-FEGNIPYS-VGEMKELTILDLSRN-NFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 12 ~L~~L~ls~n~l~~-~~p~~~~~~~~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~l~~~~~~~l~~L 87 (515)
.|+.|.+.++.=.+ .--..+...++++++|.+.++. +++..-.. -..+++|++|++..| .++...-..+..++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57888888875432 2223344568899999998885 33222122 246899999999985 45533333456789999
Q ss_pred CEEEccCccc-cccCC-ccccCCCCCCEEEcccCCCCCcCChhh----hCCCCCcEEEcccCc-CCCCcCh-hccCCCCc
Q 043235 88 DWLDLSNNNF-YGQLF-PNYMNLTDLGSLYLDNNHFSGKMTDGL----LSSTLLRVLNVSNNM-LSGDIPH-WIGNFSVL 159 (515)
Q Consensus 88 ~~L~L~~n~i-~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L 159 (515)
++|+++.+.- ++... ..+.++..++.+.+.+|.=. ..+.+ .....+..+++..|. +++..-. .-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 9999998853 32111 22455666777766654321 11222 233445666655553 2321111 11335678
Q ss_pred cEEEccCccccc-ccccc-ccCCCCCcEEeCCCCCC------CCcC-CCCcccEEEcccCceeee--ccccccCCCCccE
Q 043235 160 SVLLMSENYLQG-NIPVQ-LNNLKSLEFIDLSENSL------ISLS-NLSFVKHIYLQNNAIKGL--IPIALLRSSTLLT 228 (515)
Q Consensus 160 ~~L~l~~n~l~~-~~~~~-l~~l~~L~~L~L~~n~l------~~l~-~l~~L~~L~L~~n~i~~~--~~~~~~~~~~L~~ 228 (515)
+.|..+++.-.+ ..-.+ -.+..+|+.+.++.++- +.+. ..+.|+.+++..+..... ....-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 888887764321 11112 23668888888888763 2232 567788888888764321 2223356889999
Q ss_pred EeccCCccC-CcC----chhhhcCCCcCEEEccCccCC-CCCCccccCCCCCCEEECCCCcC
Q 043235 229 LDLRDNKLF-GRI----PHQINERSNLHVLLLRGNYLQ-GRIPNQLCQLRKLSIMDLSRNRL 284 (515)
Q Consensus 229 L~Ls~n~i~-~~~----~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i 284 (515)
+.++++... +.. ...-..+..|+.+.|++++.. +..-..+..+++|+.+++.+++-
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 999988653 221 112234578899999998654 34445677888999999988864
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.32 E-value=9.1e-06 Score=76.88 Aligned_cols=262 Identities=15% Similarity=0.070 Sum_probs=154.1
Q ss_pred CCcEEECcCCccccc--CCccccCCCCCCEEECcCCc-CcccCchHHHhCCCCCCEEEccCc-cccccCCc-cccCCCCC
Q 043235 37 KLIYLDMSKNNFEGN--IPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSCLSLDWLDLSNN-NFYGQLFP-NYMNLTDL 111 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L 111 (515)
.|+.|.++++.=.+. .-..-..++++++|.+.++. ++...-..+...|++|++|++..| .|+..... .-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 588888888754322 22334678999999998885 443333445567889999999885 34433222 23468899
Q ss_pred CEEEcccCC-CCCcCC-hhhhCCCCCcEEEcccCcCCCCcChhc----cCCCCccEEEccCcc-cccccc-ccccCCCCC
Q 043235 112 GSLYLDNNH-FSGKMT-DGLLSSTLLRVLNVSNNMLSGDIPHWI----GNFSVLSVLLMSENY-LQGNIP-VQLNNLKSL 183 (515)
Q Consensus 112 ~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L 183 (515)
++|+++++. |++... ....+...++.+.+.+|.=. .-+.+ +....+..+++..+. +++..- ..-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 999999885 333111 22345555667766665321 11222 233445666655553 222111 111356788
Q ss_pred cEEeCCCCCC-CC-----cC-CCCcccEEEcccCc-eeeeccccc-cCCCCccEEeccCCccCCc--CchhhhcCCCcCE
Q 043235 184 EFIDLSENSL-IS-----LS-NLSFVKHIYLQNNA-IKGLIPIAL-LRSSTLLTLDLRDNKLFGR--IPHQINERSNLHV 252 (515)
Q Consensus 184 ~~L~L~~n~l-~~-----l~-~l~~L~~L~L~~n~-i~~~~~~~~-~~~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~ 252 (515)
+.++.+++.. +. +. ..++|+.+.+..++ ++..-...+ .+++.|+.+++..+..... +...-.+++.|++
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 8888887654 21 11 56789999998887 333222222 3567899999988865311 2222345788999
Q ss_pred EEccCccCCCCC-----CccccCCCCCCEEECCCCcCc-CCCCccccCCccccc
Q 043235 253 LLLRGNYLQGRI-----PNQLCQLRKLSIMDLSRNRLN-GPIPSCLGNVPFWRE 300 (515)
Q Consensus 253 L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~i~-~~~p~~~~~l~~l~~ 300 (515)
+.++++...... ...-+.+..|..+.+++++.. +..-+.+..++.++.
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 999988543221 233356678899999998754 233344555555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=0.00013 Score=65.30 Aligned_cols=84 Identities=24% Similarity=0.243 Sum_probs=37.0
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCC--cCcccCchHHHhCCCCCCEEEccCccccc-cCCccccCCCCCC
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN--NFTGKLPRPIVSSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLG 112 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~ 112 (515)
..|+.|++.+..++. -..|-.+++|+.|.++.| .+.+.++.-+ ..+++|++|++++|+|.. .....+..+.+|.
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchh
Confidence 445555555544441 123444555555555555 3333333322 334555555555555541 0011223344444
Q ss_pred EEEcccCCCC
Q 043235 113 SLYLDNNHFS 122 (515)
Q Consensus 113 ~L~L~~n~i~ 122 (515)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 4455444433
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00033 Score=62.67 Aligned_cols=102 Identities=21% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCCcEEeCCCCCCC---CcCCCCcccEEEcccC--ceeeeccccccCCCCccEEeccCCccCCc-CchhhhcCCCcCEEE
Q 043235 181 KSLEFIDLSENSLI---SLSNLSFVKHIYLQNN--AIKGLIPIALLRSSTLLTLDLRDNKLFGR-IPHQINERSNLHVLL 254 (515)
Q Consensus 181 ~~L~~L~L~~n~l~---~l~~l~~L~~L~L~~n--~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 254 (515)
..|+.+.+.+..++ .++.+++|++|.++.| ++.+-.+.....+++|+++++++|+|... ....+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 34444444444443 3345566777777777 55544444455568888888888887521 112344566777888
Q ss_pred ccCccCCCCC---CccccCCCCCCEEECCCC
Q 043235 255 LRGNYLQGRI---PNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 255 L~~n~i~~~~---~~~~~~l~~L~~L~L~~n 282 (515)
+.+|..+... ...|.-+++|++||-...
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8887766422 134556677777765443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=7.1e-05 Score=67.21 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCch-HHHhCCCCCC
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPR-PIVSSCLSLD 88 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~-~~~~~l~~L~ 88 (515)
+.+.+.|++.++.+. .| .+...++.|++|.|+-|+|+.. ..+..|++|+.|+|..|.|. .+.+ .-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 445556666666665 22 2333356666666666666622 33556666666666666655 3322 2234455555
Q ss_pred EEEccCccc
Q 043235 89 WLDLSNNNF 97 (515)
Q Consensus 89 ~L~L~~n~i 97 (515)
.|.|..|.-
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 555555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=7.5e-05 Score=67.06 Aligned_cols=80 Identities=23% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcC-ChhhhCCCCCcEEE
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM-TDGLLSSTLLRVLN 139 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~ 139 (515)
+.+.|++.+|.++ .| .+...++.|+.|.|+-|+|+. ...|..|++|++|+|..|.|.... ...+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444444444444 22 123344444444444444432 123444444444444444443211 11223444444444
Q ss_pred cccCcC
Q 043235 140 VSNNML 145 (515)
Q Consensus 140 l~~n~l 145 (515)
|..|.-
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 444443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.71 E-value=0.00032 Score=72.14 Aligned_cols=133 Identities=22% Similarity=0.142 Sum_probs=82.3
Q ss_pred CCCCccEEeCcCCcCCCCC-chhHHhcccCCcEEECcCC-cccccC----CccccCCCCCCEEECcCCc-CcccCchHHH
Q 043235 9 KYDKLRHLDISSNNFSGKL-PENLGIIFQKLIYLDMSKN-NFEGNI----PYSVGEMKELTILDLSRNN-FTGKLPRPIV 81 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~-p~~~~~~~~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~ 81 (515)
.++.|+.+.+.++.-.... -..+...+++|+.|+++++ ...... ......+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3678888888877432121 1234444789999999873 221111 1234567899999999988 6633334444
Q ss_pred hCCCCCCEEEccCcc-ccccCCcc-ccCCCCCCEEEcccCCCCCc--CChhhhCCCCCcEEEcc
Q 043235 82 SSCLSLDWLDLSNNN-FYGQLFPN-YMNLTDLGSLYLDNNHFSGK--MTDGLLSSTLLRVLNVS 141 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~ 141 (515)
..+++|++|.+.+|. ++...... ...++.|++|+++++..... .......+++++.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 558899999988887 55433332 34678899999998865411 12223446666665544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00029 Score=72.46 Aligned_cols=111 Identities=22% Similarity=0.067 Sum_probs=50.4
Q ss_pred CCCCCEEECcCCcCcccC-chHHHhCCCCCCEEEccCc-cccccC----CccccCCCCCCEEEcccCC-CCCcCChhhhC
Q 043235 59 MKELTILDLSRNNFTGKL-PRPIVSSCLSLDWLDLSNN-NFYGQL----FPNYMNLTDLGSLYLDNNH-FSGKMTDGLLS 131 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l-~~~~~~~l~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~ 131 (515)
++.|+.|.+.++.-.... -..+...++.|+.|+++++ ...... ......+.+|+.|+++.+. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666666555222121 1223345566666666552 111000 1122334556666666655 44333333332
Q ss_pred -CCCCcEEEcccCc-CCCCcC-hhccCCCCccEEEccCccc
Q 043235 132 -STLLRVLNVSNNM-LSGDIP-HWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 132 -l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l 169 (515)
+++|++|.+.++. ++...- .....++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5566666655554 332211 1223455566666665544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.62 E-value=0.0043 Score=33.05 Aligned_cols=12 Identities=58% Similarity=0.791 Sum_probs=5.2
Q ss_pred CCeeeCCCCccc
Q 043235 411 IESLDLSRNKLS 422 (515)
Q Consensus 411 L~~L~Ls~N~l~ 422 (515)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0083 Score=31.92 Aligned_cols=12 Identities=58% Similarity=0.866 Sum_probs=4.9
Q ss_pred CcEEECcCCccc
Q 043235 38 LIYLDMSKNNFE 49 (515)
Q Consensus 38 L~~L~L~~n~i~ 49 (515)
|++|||++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.09 E-value=0.0014 Score=57.49 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEe
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFN 439 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 439 (515)
+...+.||++.|++. .....|.-++.|..|+++.|++. ..|..+.....++.+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 667888999999987 55566888999999999999998 78999999999999999999998 8899999999999999
Q ss_pred cccCccc
Q 043235 440 VSYNNLS 446 (515)
Q Consensus 440 Ls~N~l~ 446 (515)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.33 E-value=0.043 Score=30.50 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.5
Q ss_pred CCCCCEEECcCCcCcccCchHHHh
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVS 82 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~ 82 (515)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.33 E-value=0.043 Score=30.50 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.5
Q ss_pred CCCCCEEECcCCcCcccCchHHHh
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVS 82 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~ 82 (515)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.72 E-value=0.00052 Score=69.16 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCCCcEEEcccCcCCCCc----ChhccCCCC-ccEEEccCcccccc----ccccccCC-CCCcEEeCCCCCCCCc-----
Q 043235 132 STLLRVLNVSNNMLSGDI----PHWIGNFSV-LSVLLMSENYLQGN----IPVQLNNL-KSLEFIDLSENSLISL----- 196 (515)
Q Consensus 132 l~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~l----- 196 (515)
..++++|.+++|.++... ...+...+. +..+++..|.+.+. ....+..+ ..++.++++.|.+...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 455666666666655211 112333333 55566666666533 11223333 5567777777776432
Q ss_pred ----CCCCcccEEEcccCceee
Q 043235 197 ----SNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 197 ----~~l~~L~~L~L~~n~i~~ 214 (515)
...+.++.+.+.+|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 245567777777777654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.63 E-value=0.039 Score=27.16 Aligned_cols=11 Identities=55% Similarity=0.742 Sum_probs=3.2
Q ss_pred CCEEECcCCcC
Q 043235 62 LTILDLSRNNF 72 (515)
Q Consensus 62 L~~L~L~~n~l 72 (515)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.51 E-value=0.00058 Score=68.84 Aligned_cols=183 Identities=22% Similarity=0.162 Sum_probs=95.8
Q ss_pred CCEEECcCCcCcccCch---HHHhCCCCCCEEEccCccccccCCcc----ccCC-CCCCEEEcccCCCCCc----CChhh
Q 043235 62 LTILDLSRNNFTGKLPR---PIVSSCLSLDWLDLSNNNFYGQLFPN----YMNL-TDLGSLYLDNNHFSGK----MTDGL 129 (515)
Q Consensus 62 L~~L~L~~n~l~~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~i~~~----~~~~~ 129 (515)
+..|.|.+|.+...-.. ..+....+|..|++++|.+....... +... ..+++|.+..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67777777777632222 12344567777888888776322222 2222 4566677777776643 33445
Q ss_pred hCCCCCcEEEcccCcCCCC----cChhc----cCCCCccEEEccCcccccccc----ccccCCCCCcEEeCCCCCCCCcC
Q 043235 130 LSSTLLRVLNVSNNMLSGD----IPHWI----GNFSVLSVLLMSENYLQGNIP----VQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 130 ~~l~~L~~L~l~~n~l~~~----~~~~~----~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
.....++.++++.|.+... .+..+ ....++++|.+.+|.++.... ..+...+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~--------------- 233 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGES--------------- 233 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccch---------------
Confidence 5566777778877776311 11122 234456666666665542111 11222222
Q ss_pred CCCcccEEEcccCceeee----ccccccCC-CCccEEeccCCccCCcCch----hhhcCCCcCEEEccCccCCC
Q 043235 198 NLSFVKHIYLQNNAIKGL----IPIALLRS-STLLTLDLRDNKLFGRIPH----QINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 198 ~l~~L~~L~L~~n~i~~~----~~~~~~~~-~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~~ 262 (515)
.+..+++..|.+.+. ....+..+ ..++.++++.|.|++.... .+..++.++.+.++.|.+.+
T Consensus 234 ---~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 234 ---LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ---hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 133344444444332 11223333 4567777777777654333 33445677777777777764
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.43 E-value=0.0016 Score=57.16 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=59.6
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+...+.||++.|++. ..-..|+-++.|..|+++.|++. .+|.++ .....++++++..|..+ ..|.+++..+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 567777777777766 34455666777777778777776 677665 55667777777777765 556777777788877
Q ss_pred EcccCCCC
Q 043235 115 YLDNNHFS 122 (515)
Q Consensus 115 ~L~~n~i~ 122 (515)
++-+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777654
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.053 Score=26.68 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=5.1
Q ss_pred CccEEeCcCCcCC
Q 043235 12 KLRHLDISSNNFS 24 (515)
Q Consensus 12 ~L~~L~ls~n~l~ 24 (515)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.34 E-value=0.15 Score=28.30 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=13.1
Q ss_pred CCccEEeCcCCcCCCCCchhHH
Q 043235 11 DKLRHLDISSNNFSGKLPENLG 32 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~ 32 (515)
++|++|++++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.34 E-value=0.15 Score=28.30 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=13.1
Q ss_pred CCccEEeCcCCcCCCCCchhHH
Q 043235 11 DKLRHLDISSNNFSGKLPENLG 32 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~ 32 (515)
++|++|++++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.62 E-value=0.025 Score=48.90 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=60.7
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCcccccc-Chhhhc-CccCCCeeeCCCC-cccccCCccccCCCCCCEE
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGA-IPESFS-NLKMIESLDLSRN-KLSGQIPPQLTELNFLSNF 438 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 438 (515)
.++.+|-++..|..+.-+.+.++++++.|.+.+|.-.+. --+-++ -.++|+.|+|++| +|++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467799999999888778888899999999998854321 111111 3579999999988 5776666677888888888
Q ss_pred ecccC
Q 043235 439 NVSYN 443 (515)
Q Consensus 439 ~Ls~N 443 (515)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 87653
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.08 E-value=0.034 Score=48.09 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=16.2
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCC
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 70 (515)
++.+|-++..|....-+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444555555554444444444555555555444
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.06 E-value=1.3 Score=24.57 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=8.7
Q ss_pred CCCcEEeCCCCCCCCcC
Q 043235 181 KSLEFIDLSENSLISLS 197 (515)
Q Consensus 181 ~~L~~L~L~~n~l~~l~ 197 (515)
.+|+.|+++.|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555554443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.87 E-value=13 Score=36.92 Aligned_cols=107 Identities=20% Similarity=0.073 Sum_probs=45.1
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHH--HhCCCCCCEEEccCccccccCCccccC---CCCC
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPI--VSSCLSLDWLDLSNNNFYGQLFPNYMN---LTDL 111 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~---l~~L 111 (515)
.+++++++.|.+....|-.+.+-.. -+.++.|+++...-..+ -+.-..+.+++++.|.....++..+.. -.-+
T Consensus 166 r~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl 243 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVL 243 (553)
T ss_pred hhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhh
Confidence 4566666666665544433322111 04444444331110000 011124556666666665544443221 1234
Q ss_pred CEEEcccCCCCC---cCChhhhCCCCCcEEEcccCcC
Q 043235 112 GSLYLDNNHFSG---KMTDGLLSSTLLRVLNVSNNML 145 (515)
Q Consensus 112 ~~L~L~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l 145 (515)
+.++.+...+.- ..+-....-+++...+++.|..
T Consensus 244 ~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 244 FKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hcccccccccchhhcccccccccccccchhhhccCCC
Confidence 555555544431 1111222334555556655543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.32 E-value=2.3 Score=23.53 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=10.6
Q ss_pred CCCEEECcCCcCcccCch
Q 043235 61 ELTILDLSRNNFTGKLPR 78 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~ 78 (515)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666666 5554
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=72.96 E-value=1.7 Score=52.28 Aligned_cols=36 Identities=28% Similarity=0.200 Sum_probs=30.4
Q ss_pred eCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 415 DLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 415 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
||++|+|+...+..|..+++|+.|+|++|++.....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 689999997778889999999999999888876544
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.85 E-value=2.6 Score=23.74 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=9.2
Q ss_pred cCCCeeeCCCCccc
Q 043235 409 KMIESLDLSRNKLS 422 (515)
Q Consensus 409 ~~L~~L~Ls~N~l~ 422 (515)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777777665
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.54 E-value=16 Score=36.43 Aligned_cols=272 Identities=18% Similarity=0.085 Sum_probs=129.7
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccc---cCCCCCCEEECcCCcCcccCchHHHh--CC
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV---GEMKELTILDLSRNNFTGKLPRPIVS--SC 84 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~~l~~~~~~--~l 84 (515)
-+.++++|++.|.+...+|-.+.. ..--+.++.|..+...-..+ ..=..+.+++++.|.....+|..+-. .-
T Consensus 164 npr~r~~dls~npi~dkvpihl~~---p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQ---PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred cchhhhhccCCCcccccCCccccC---CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 346789999999998777766543 11226666666553211111 11234788899988877667654321 12
Q ss_pred CCCCEEEccCcccccc---CCccccCCCCCCEEEcccCCCCC--------cCChhhhCCCCCcEEEcccCcCCCCcChhc
Q 043235 85 LSLDWLDLSNNNFYGQ---LFPNYMNLTDLGSLYLDNNHFSG--------KMTDGLLSSTLLRVLNVSNNMLSGDIPHWI 153 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 153 (515)
..++.++.+...+.-. .+-..+.-+++...+++.|.... ...+.|..-.++ +|++.++.....-+..+
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~ 319 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSM 319 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhh
Confidence 3577777777666421 12233455678888887776431 112233333445 56655554322111110
Q ss_pred -cCC-----CCccEEEccCcccccc-ccccccCCCCCcEEeCCCCCCCC-------cCCCCcccEEEcccCceeee----
Q 043235 154 -GNF-----SVLSVLLMSENYLQGN-IPVQLNNLKSLEFIDLSENSLIS-------LSNLSFVKHIYLQNNAIKGL---- 215 (515)
Q Consensus 154 -~~l-----~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~-------l~~l~~L~~L~L~~n~i~~~---- 215 (515)
-.+ +.=-.++++.|...+. ...+-..-..+++|....|.+.. +...+..+.+++..-.-..+
T Consensus 320 LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~ 399 (553)
T KOG4242|consen 320 LLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSS 399 (553)
T ss_pred hcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccc
Confidence 000 0001222333222211 00000111235555555554421 11222233333322211000
Q ss_pred -c--cccc--cCCCCccEEeccCCccCCcCc---hhhhcCCCcCEEEccCccCCC----CCCccccCCCCCCEEECCCCc
Q 043235 216 -I--PIAL--LRSSTLLTLDLRDNKLFGRIP---HQINERSNLHVLLLRGNYLQG----RIPNQLCQLRKLSIMDLSRNR 283 (515)
Q Consensus 216 -~--~~~~--~~~~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~ 283 (515)
. +... ....-+..+.++.+.+....- .....-+.+.+|++++|.... .+|.....-.+++.+..+.|.
T Consensus 400 ~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 400 TEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 0 0000 011236667777777653221 223344678888888887763 334555555667777777776
Q ss_pred Cc
Q 043235 284 LN 285 (515)
Q Consensus 284 i~ 285 (515)
..
T Consensus 480 p~ 481 (553)
T KOG4242|consen 480 PE 481 (553)
T ss_pred cc
Confidence 54
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.62 E-value=4.2 Score=41.14 Aligned_cols=63 Identities=24% Similarity=0.203 Sum_probs=28.5
Q ss_pred ccCCcEEECcCCcccccCC--ccccCCCCCCEEECcCC--cCcccCchHHHhCCCCCCEEEccCcccc
Q 043235 35 FQKLIYLDMSKNNFEGNIP--YSVGEMKELTILDLSRN--NFTGKLPRPIVSSCLSLDWLDLSNNNFY 98 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n--~l~~~l~~~~~~~l~~L~~L~L~~n~i~ 98 (515)
++.+..++|++|++..... .--...++|+.|+|++| .+. ..++----+...|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccc
Confidence 4555666666665542110 11123456666666666 332 111100012234566666666654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.46 E-value=4.1 Score=41.18 Aligned_cols=64 Identities=23% Similarity=0.195 Sum_probs=43.6
Q ss_pred cccccCCEEEcCCCcCccccc--cchhccccCCeeccCCc--cccccChhhhcC--ccCCCeeeCCCCcccc
Q 043235 358 SNLNYMAGLDLSGNEFSGEIP--WKIGQLQNIRALNLSNN--LLSGAIPESFSN--LKMIESLDLSRNKLSG 423 (515)
Q Consensus 358 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~ 423 (515)
...+.+..++|++|++..... .--...+.|+.|+|++| .+. ....+.+ ..-|++|.+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 457888899999999873211 11234588999999999 443 2223333 3458899999999874
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.46 E-value=16 Score=44.71 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=31.0
Q ss_pred ccCCccccccChhhhcCccCCCeeeCCCCccccc
Q 043235 391 NLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424 (515)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 424 (515)
||++|+|+.+.+..|..+++|+.|+|++|.+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6899999988889999999999999999998753
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.49 E-value=23 Score=19.26 Aligned_cols=11 Identities=45% Similarity=0.410 Sum_probs=5.8
Q ss_pred CCCCEEECcCC
Q 043235 60 KELTILDLSRN 70 (515)
Q Consensus 60 ~~L~~L~L~~n 70 (515)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 95
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=20.95 E-value=48 Score=21.40 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=8.8
Q ss_pred CCCCCCCccCC
Q 043235 466 NSALCGSMIKR 476 (515)
Q Consensus 466 n~~~c~~~l~~ 476 (515)
|||.|+|.+..
T Consensus 1 NP~~CdC~l~~ 11 (51)
T smart00082 1 NPFICDCELRW 11 (51)
T ss_pred CCccCcCCchH
Confidence 89999987753
Done!