Query 043235
Match_columns 515
No_of_seqs 606 out of 4149
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.2E-59 2.1E-63 501.6 33.8 479 6-487 264-757 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-51 6.1E-56 443.5 32.5 440 5-469 194-717 (768)
3 3t6q_A CD180 antigen; protein- 100.0 4.1E-50 1.4E-54 423.2 35.9 468 2-474 24-565 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 6.9E-49 2.4E-53 413.8 31.1 448 2-476 23-565 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-48 2.3E-52 411.7 39.1 468 3-474 17-627 (680)
6 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-48 1.3E-52 421.7 32.0 467 2-475 16-566 (844)
7 4eco_A Uncharacterized protein 100.0 9.7E-48 3.3E-52 405.2 25.5 391 11-470 81-601 (636)
8 2z63_A TOLL-like receptor 4, v 100.0 6.8E-47 2.3E-51 395.9 30.2 426 2-474 19-536 (570)
9 3t6q_A CD180 antigen; protein- 100.0 3.9E-46 1.3E-50 392.8 34.3 441 6-451 52-565 (606)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-46 6.5E-51 390.6 27.5 418 2-473 17-514 (549)
11 4eco_A Uncharacterized protein 100.0 3.2E-46 1.1E-50 393.6 25.0 374 27-473 198-630 (636)
12 2z7x_B TOLL-like receptor 1, v 100.0 7.1E-46 2.4E-50 383.5 23.9 419 2-475 12-487 (520)
13 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-45 1.7E-49 384.4 30.6 418 6-451 51-563 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 3E-45 1E-49 392.6 28.5 392 11-469 323-840 (876)
15 3v47_A TOLL-like receptor 5B a 100.0 5E-45 1.7E-49 370.9 28.3 370 13-452 12-414 (455)
16 1ziw_A TOLL-like receptor 3; i 100.0 7E-44 2.4E-48 380.7 37.2 448 13-468 6-548 (680)
17 2z63_A TOLL-like receptor 4, v 100.0 7.5E-45 2.6E-49 380.4 26.3 400 6-453 47-538 (570)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-43 4E-48 376.1 33.7 447 2-475 43-586 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 2.3E-44 7.9E-49 385.8 27.1 372 27-473 440-870 (876)
20 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-43 7.1E-48 384.4 31.1 450 14-469 7-539 (844)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5E-43 1.7E-47 365.3 27.3 409 10-475 30-516 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 5.1E-42 1.8E-46 348.7 28.9 366 38-473 12-412 (455)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-42 1.8E-46 357.5 29.3 371 2-451 43-515 (562)
24 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-42 1.2E-46 358.4 24.1 392 6-451 45-515 (549)
25 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-42 1.9E-46 354.3 21.2 417 14-469 3-457 (520)
26 1o6v_A Internalin A; bacterial 100.0 2.2E-39 7.5E-44 329.8 30.7 345 8-448 43-390 (466)
27 2id5_A Lingo-1, leucine rich r 100.0 5.2E-40 1.8E-44 335.8 25.1 317 38-423 13-334 (477)
28 1o6v_A Internalin A; bacterial 100.0 1.4E-38 4.9E-43 323.8 32.1 355 19-470 32-389 (466)
29 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-38 5.2E-43 336.9 30.3 402 4-450 69-584 (635)
30 3o6n_A APL1; leucine-rich repe 100.0 1E-38 3.4E-43 317.6 26.9 332 60-473 45-378 (390)
31 2id5_A Lingo-1, leucine rich r 100.0 1.1E-38 3.9E-43 325.8 28.0 348 13-431 13-365 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-38 5.7E-43 320.8 27.1 346 7-451 38-392 (457)
33 3oja_B Anopheles plasmodium-re 100.0 1E-37 3.4E-42 327.0 27.0 332 59-472 50-383 (597)
34 1jl5_A Outer protein YOPM; leu 100.0 7E-38 2.4E-42 316.0 24.4 389 9-470 9-430 (454)
35 3o6n_A APL1; leucine-rich repe 100.0 8.8E-37 3E-41 303.5 27.0 311 35-424 44-354 (390)
36 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-36 1.1E-40 304.2 27.5 343 26-467 33-385 (457)
37 4fmz_A Internalin; leucine ric 100.0 8.6E-36 2.9E-40 291.7 29.3 304 35-446 43-346 (347)
38 4fmz_A Internalin; leucine ric 100.0 1.6E-35 5.4E-40 289.8 30.6 306 8-422 41-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 1.2E-35 4.2E-40 311.2 27.3 311 35-424 50-360 (597)
40 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-36 1.5E-40 288.8 18.7 259 133-478 50-312 (313)
41 1jl5_A Outer protein YOPM; leu 100.0 5E-34 1.7E-38 287.8 30.7 343 12-451 72-434 (454)
42 1z7x_W Ribonuclease inhibitor; 100.0 6.4E-38 2.2E-42 319.1 1.1 377 10-447 2-441 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-34 1.2E-38 278.3 26.4 247 37-292 34-284 (332)
44 1xku_A Decorin; proteoglycan, 100.0 2.2E-33 7.4E-38 272.5 29.1 248 37-292 32-283 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-33 3.9E-38 274.7 23.6 291 60-444 33-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.2E-33 7.4E-38 272.5 25.4 292 60-444 31-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 4E-36 1.4E-40 305.8 -1.5 371 35-468 2-439 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-33 1E-37 268.9 17.7 248 110-444 51-302 (313)
49 2z80_A TOLL-like receptor 2, v 100.0 2E-31 7E-36 261.1 17.5 276 9-289 29-318 (353)
50 2z66_A Variable lymphocyte rec 100.0 4.8E-30 1.6E-34 246.2 19.5 180 86-285 29-212 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 1.8E-30 6.3E-35 254.3 16.9 262 2-265 43-318 (353)
52 2z66_A Variable lymphocyte rec 100.0 2.5E-29 8.5E-34 241.2 23.0 248 14-287 10-263 (306)
53 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-29 1.1E-33 237.9 20.5 225 39-286 14-239 (285)
54 3zyj_A Leucine-rich repeat-con 100.0 7.9E-29 2.7E-33 250.0 24.5 248 13-286 45-293 (440)
55 3zyi_A Leucine-rich repeat-con 100.0 9.8E-29 3.3E-33 250.2 25.1 246 13-286 56-304 (452)
56 3o53_A Protein LRIM1, AGAP0063 100.0 3.4E-31 1.2E-35 255.2 6.4 263 115-451 16-281 (317)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.6E-29 5.6E-34 239.9 17.7 256 13-293 13-269 (285)
58 3zyj_A Leucine-rich repeat-con 100.0 2E-28 6.7E-33 247.1 24.3 237 2-261 55-292 (440)
59 3ogk_B Coronatine-insensitive 100.0 3E-31 1E-35 278.5 3.4 406 9-448 71-528 (592)
60 3zyi_A Leucine-rich repeat-con 100.0 1.9E-28 6.7E-33 248.0 23.0 237 2-261 66-303 (452)
61 4fcg_A Uncharacterized protein 100.0 2.3E-28 8E-33 236.2 21.3 233 11-284 81-313 (328)
62 3o53_A Protein LRIM1, AGAP0063 100.0 2.4E-30 8.1E-35 249.3 5.9 258 11-282 10-272 (317)
63 3g06_A SSPH2 (leucine-rich rep 100.0 1.1E-27 3.7E-32 248.9 25.1 115 36-170 40-154 (622)
64 3ogk_B Coronatine-insensitive 100.0 3.9E-31 1.3E-35 277.7 -1.5 409 15-468 54-525 (592)
65 3g06_A SSPH2 (leucine-rich rep 100.0 2.5E-27 8.5E-32 246.1 26.5 268 11-409 40-308 (622)
66 4fcg_A Uncharacterized protein 100.0 5.2E-28 1.8E-32 233.7 19.7 220 60-304 81-309 (328)
67 1wwl_A Monocyte differentiatio 100.0 6.2E-29 2.1E-33 238.9 9.4 242 35-286 42-310 (312)
68 3oja_A Leucine-rich immune mol 100.0 1E-28 3.5E-33 251.5 11.4 234 134-441 35-270 (487)
69 1wwl_A Monocyte differentiatio 100.0 6.2E-29 2.1E-33 238.9 7.3 243 9-262 41-310 (312)
70 3oja_A Leucine-rich immune mol 99.9 8.5E-28 2.9E-32 244.7 11.5 242 26-280 21-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 1.4E-26 5E-31 218.4 19.1 166 14-184 10-176 (276)
72 2p1m_B Transport inhibitor res 99.9 1.3E-29 4.6E-34 266.1 -2.2 405 9-447 64-520 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 8E-26 2.7E-30 213.3 20.5 84 202-285 30-113 (276)
74 2p1m_B Transport inhibitor res 99.9 1.5E-28 5.1E-33 258.1 0.9 398 9-450 103-548 (594)
75 1p9a_G Platelet glycoprotein I 99.9 1.5E-25 5.1E-30 212.5 18.4 204 176-448 5-210 (290)
76 2o6q_A Variable lymphocyte rec 99.9 6.1E-25 2.1E-29 206.4 21.8 204 182-450 17-222 (270)
77 2o6q_A Variable lymphocyte rec 99.9 1.1E-24 3.8E-29 204.7 21.4 203 12-238 17-219 (270)
78 1p9a_G Platelet glycoprotein I 99.9 2.7E-24 9.2E-29 203.8 20.7 198 153-422 6-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 3E-25 1E-29 208.8 12.6 228 37-297 20-247 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.4E-24 4.7E-29 204.2 16.7 224 10-248 18-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 2.5E-25 8.6E-30 218.3 6.9 258 15-289 2-301 (362)
82 2xwt_C Thyrotropin receptor; s 99.9 5.2E-24 1.8E-28 196.4 14.5 201 23-235 23-237 (239)
83 3goz_A Leucine-rich repeat-con 99.9 1.1E-24 3.6E-29 213.9 9.6 246 40-304 2-292 (362)
84 2ca6_A RAN GTPase-activating p 99.9 2.2E-25 7.4E-30 221.0 4.4 254 14-288 12-319 (386)
85 3m19_A Variable lymphocyte rec 99.9 1.6E-23 5.4E-28 194.5 16.4 211 202-481 16-232 (251)
86 2ca6_A RAN GTPase-activating p 99.9 5E-25 1.7E-29 218.4 6.4 240 9-264 30-319 (386)
87 3m19_A Variable lymphocyte rec 99.9 4.6E-23 1.6E-27 191.4 18.1 180 11-195 14-193 (251)
88 2xwt_C Thyrotropin receptor; s 99.9 5.8E-23 2E-27 189.3 16.6 205 48-282 23-236 (239)
89 4glp_A Monocyte differentiatio 99.9 4E-23 1.4E-27 198.2 16.1 223 59-286 63-308 (310)
90 1h6u_A Internalin H; cell adhe 99.9 2.6E-23 8.8E-28 199.0 14.6 212 12-262 20-231 (308)
91 4glp_A Monocyte differentiatio 99.9 2.3E-23 7.7E-28 199.9 14.2 224 12-262 65-308 (310)
92 4ay9_X Follicle-stimulating ho 99.9 6.9E-23 2.4E-27 199.9 17.0 243 14-283 12-257 (350)
93 2ast_B S-phase kinase-associat 99.9 7.5E-24 2.6E-28 205.9 10.1 256 11-294 47-315 (336)
94 1h6u_A Internalin H; cell adhe 99.9 1.4E-22 4.9E-27 193.8 17.0 194 7-237 37-230 (308)
95 2ast_B S-phase kinase-associat 99.9 1.6E-23 5.4E-28 203.6 8.7 201 60-283 47-258 (336)
96 4ay9_X Follicle-stimulating ho 99.9 1.8E-21 6.2E-26 189.8 15.3 204 2-208 21-231 (350)
97 2o6s_A Variable lymphocyte rec 99.9 7.7E-21 2.6E-25 171.1 14.9 178 14-222 10-187 (208)
98 2o6s_A Variable lymphocyte rec 99.8 7E-21 2.4E-25 171.4 13.6 172 2-182 19-190 (208)
99 2xot_A Amphoterin-induced prot 99.8 1.3E-20 4.5E-25 184.5 12.9 175 14-193 21-201 (361)
100 1h6t_A Internalin B; cell adhe 99.8 2.7E-20 9.1E-25 176.4 13.6 192 10-238 23-214 (291)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 5.6E-20 1.9E-24 166.6 14.7 152 14-170 14-166 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 8E-20 2.7E-24 165.6 15.3 152 14-170 14-165 (220)
103 1h6t_A Internalin B; cell adhe 99.8 1.1E-19 3.8E-24 172.2 15.1 171 7-193 42-212 (291)
104 3e6j_A Variable lymphocyte rec 99.8 2E-19 6.7E-24 164.2 16.0 153 13-171 21-173 (229)
105 1m9s_A Internalin B; cell inva 99.8 5.9E-20 2E-24 190.6 13.6 194 6-215 16-212 (605)
106 3cvr_A Invasion plasmid antige 99.8 3.2E-19 1.1E-23 183.0 18.4 192 37-270 60-252 (571)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-19 8.9E-24 162.3 15.7 154 38-194 13-166 (220)
108 2v9t_B SLIT homolog 2 protein 99.8 3.1E-19 1.1E-23 161.7 15.4 152 39-194 14-165 (220)
109 3cvr_A Invasion plasmid antige 99.8 2.5E-19 8.7E-24 183.8 15.9 188 61-296 60-254 (571)
110 2xot_A Amphoterin-induced prot 99.8 1.4E-19 4.9E-24 177.1 12.6 167 2-170 30-202 (361)
111 3e6j_A Variable lymphocyte rec 99.8 6.3E-19 2.1E-23 160.9 15.4 156 226-450 21-176 (229)
112 1m9s_A Internalin B; cell inva 99.8 7.5E-19 2.6E-23 182.3 16.6 196 61-292 22-217 (605)
113 4ezg_A Putative uncharacterize 99.8 1E-18 3.6E-23 155.5 12.8 150 35-193 43-193 (197)
114 1xeu_A Internalin C; cellular 99.8 3.1E-19 1E-23 166.4 9.0 173 7-215 15-187 (263)
115 4ezg_A Putative uncharacterize 99.8 6.6E-19 2.3E-23 156.8 10.8 157 5-171 38-195 (197)
116 1xeu_A Internalin C; cellular 99.8 1.7E-18 5.8E-23 161.4 11.4 167 202-448 21-187 (263)
117 3sb4_A Hypothetical leucine ri 99.8 8.9E-19 3E-23 169.3 8.1 215 84-301 100-326 (329)
118 1dce_A Protein (RAB geranylger 99.7 6.3E-21 2.2E-25 196.7 -8.4 79 360-440 485-567 (567)
119 1w8a_A SLIT protein; signaling 99.7 4.4E-18 1.5E-22 150.7 10.5 91 360-450 53-143 (192)
120 3sb4_A Hypothetical leucine ri 99.7 5.4E-18 1.8E-22 163.8 10.8 289 35-416 24-328 (329)
121 1dce_A Protein (RAB geranylger 99.7 9.6E-20 3.3E-24 187.9 -3.1 181 8-196 346-548 (567)
122 1w8a_A SLIT protein; signaling 99.7 1.7E-17 5.7E-22 146.9 11.2 132 227-426 11-143 (192)
123 4fdw_A Leucine rich hypothetic 99.7 4.4E-16 1.5E-20 153.6 20.4 246 36-295 113-368 (401)
124 2wfh_A SLIT homolog 2 protein 99.7 6.8E-17 2.3E-21 143.0 12.8 115 360-475 30-145 (193)
125 4fs7_A Uncharacterized protein 99.7 5.3E-16 1.8E-20 153.6 20.4 313 48-443 59-376 (394)
126 4fdw_A Leucine rich hypothetic 99.7 6.6E-16 2.3E-20 152.3 20.1 261 10-285 112-383 (401)
127 2ell_A Acidic leucine-rich nuc 99.7 9.6E-17 3.3E-21 138.9 11.8 132 10-145 23-159 (168)
128 4b8c_D Glucose-repressible alc 99.7 4.4E-18 1.5E-22 181.0 3.7 191 11-210 173-369 (727)
129 2wfh_A SLIT homolog 2 protein 99.7 1.5E-16 5E-21 140.8 12.6 127 14-146 13-139 (193)
130 2ell_A Acidic leucine-rich nuc 99.7 8.8E-17 3E-21 139.1 9.8 133 35-170 23-160 (168)
131 4b8c_D Glucose-repressible alc 99.7 1.7E-17 6E-22 176.4 6.3 120 157-285 173-306 (727)
132 2o6r_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 136.5 13.5 133 13-150 9-141 (177)
133 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 5.7E-21 134.4 8.1 108 36-146 17-126 (149)
134 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 132.3 9.6 131 8-142 14-149 (149)
135 4fs7_A Uncharacterized protein 99.6 1.5E-14 5E-19 143.3 21.9 330 26-438 61-393 (394)
136 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 130.5 13.7 130 38-171 9-138 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 5.8E-20 132.0 9.8 133 7-146 15-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.6 4.1E-15 1.4E-19 129.6 9.5 132 56-193 15-152 (176)
139 1ds9_A Outer arm dynein; leuci 99.6 5E-17 1.7E-21 144.8 -3.6 155 221-447 15-186 (198)
140 4gt6_A Cell surface protein; l 99.5 8.3E-13 2.8E-17 130.6 22.8 321 38-444 66-389 (394)
141 3g39_A Variable lymphocyte rec 99.5 3E-14 1E-18 123.2 10.7 107 12-123 10-116 (170)
142 3g39_A Variable lymphocyte rec 99.5 2.5E-14 8.7E-19 123.6 10.2 108 363-473 11-119 (170)
143 2r9u_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 121.8 10.7 106 13-123 14-119 (174)
144 4gt6_A Cell surface protein; l 99.5 2.7E-12 9.2E-17 127.0 24.0 332 4-422 56-391 (394)
145 1ds9_A Outer arm dynein; leuci 99.5 2.5E-16 8.6E-21 140.2 -4.6 146 36-187 18-180 (198)
146 2r9u_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 121.5 10.2 106 364-472 15-121 (174)
147 3un9_A NLR family member X1; l 99.4 3.7E-14 1.3E-18 138.5 0.3 160 35-194 71-252 (372)
148 3un9_A NLR family member X1; l 99.4 2.1E-14 7.3E-19 140.2 -1.8 161 59-220 71-259 (372)
149 2ifg_A High affinity nerve gro 99.4 9.8E-13 3.3E-17 127.8 9.7 106 366-473 13-120 (347)
150 4h09_A Hypothetical leucine ri 99.3 8.2E-10 2.8E-14 108.5 24.8 313 35-434 45-357 (379)
151 4h09_A Hypothetical leucine ri 99.3 5.5E-10 1.9E-14 109.8 23.4 303 55-443 41-343 (379)
152 2ifg_A High affinity nerve gro 99.2 4.8E-11 1.6E-15 115.8 10.8 103 15-122 12-116 (347)
153 2ra8_A Uncharacterized protein 98.9 5.2E-10 1.8E-14 108.2 4.7 164 218-444 166-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.2E-14 105.5 5.8 83 199-283 251-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 9.2E-09 3.2E-13 89.7 0.4 44 242-285 30-78 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 3.2E-08 1.1E-12 86.2 3.1 117 53-169 29-163 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.8E-07 6.2E-12 85.7 5.8 67 382-450 167-237 (267)
158 3rw6_A Nuclear RNA export fact 98.3 8.5E-07 2.9E-11 81.2 8.0 97 16-116 148-258 (267)
159 3e4g_A ATP synthase subunit S, 98.3 1.2E-07 4E-12 80.6 1.7 84 361-444 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 5.5E-07 1.9E-11 76.4 3.5 83 37-120 62-150 (176)
161 3rfe_A Platelet glycoprotein I 97.5 0.00016 5.6E-09 58.3 5.7 57 388-446 11-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00021 7.2E-09 61.7 4.6 66 56-122 37-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00013 4.3E-09 63.1 2.8 85 200-284 70-169 (197)
164 3rfe_A Platelet glycoprotein I 97.1 0.00061 2.1E-08 54.9 5.7 55 15-72 12-67 (130)
165 2lz0_A Uncharacterized protein 70.1 7.6 0.00026 28.9 5.1 43 49-93 9-51 (100)
166 2lz0_A Uncharacterized protein 70.0 7 0.00024 29.1 4.9 43 75-118 10-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.2e-59 Score=501.58 Aligned_cols=479 Identities=33% Similarity=0.467 Sum_probs=372.1
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
|...+++|++|++++|.+++.+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+|...+..++
T Consensus 264 ~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 34467778888888888877788777765578888888888888888888888888888888888888788887678888
Q ss_pred CCCEEEccCccccccCCccccCCC-CCCEEEcccCCCCCcCChhhhC--CCCCcEEEcccCcCCCCcChhccCCCCccEE
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLT-DLGSLYLDNNHFSGKMTDGLLS--STLLRVLNVSNNMLSGDIPHWIGNFSVLSVL 162 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 162 (515)
+|++|++++|.+++..|..+.+++ +|++|++++|++++..+..+.. +++|++|++++|.+++.+|..+..+++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 888888888888877788888777 8888888888888777777766 7788999999998888888888888999999
Q ss_pred EccCccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 163 LMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 163 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
++++|++++.+|..+..+++|+.|++++|++.. +..++.|++|++++|++++.+|..+..+++|++|++++|+++
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 999999888888888888999999999988853 336788899999999998888888888899999999999998
Q ss_pred CcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCC
Q 043235 238 GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDS 317 (515)
Q Consensus 238 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 317 (515)
+.+|.++..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..+.....+..........+.+......
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 88888888899999999999999888888888999999999999999888888877665444332222111111110000
Q ss_pred CccccCC----cccccCccccccccccccceeeeccCccc---cccccccccCCEEEcCCCcCccccccchhccccCCee
Q 043235 318 PVAYYNS----SLELQLPVELHFRQDQQVGAKFVTKNRYE---FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAL 390 (515)
Q Consensus 318 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 390 (515)
....... ......+..+ .............+... ......+++|++|||++|++++.+|..++.+++|++|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGG--GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccchhh--hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 0000000 0000000000 00000000000000000 0011347899999999999999999999999999999
Q ss_pred ccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCC
Q 043235 391 NLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALC 470 (515)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c 470 (515)
+|++|++++.+|..|+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...++.|||++|
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCC
Q 043235 471 GSMIKRKCSSALTPPAT 487 (515)
Q Consensus 471 ~~~l~~~~~~~~~~~~~ 487 (515)
|.|+. .|....+..++
T Consensus 742 g~~l~-~C~~~~~~~~~ 757 (768)
T 3rgz_A 742 GYPLP-RCDPSNADGYA 757 (768)
T ss_dssp STTSC-CCCSCC-----
T ss_pred CCCCc-CCCCCccCCCC
Confidence 99987 88766555433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-51 Score=443.46 Aligned_cols=440 Identities=31% Similarity=0.423 Sum_probs=322.1
Q ss_pred CCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCC
Q 043235 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSC 84 (515)
Q Consensus 5 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l 84 (515)
.+...+++|++|++++|.+++.+|. +.. +++|++|++++|.+++..|..+.++++|++|++++|.+++.+|.. .+
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l 268 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PL 268 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCB-CTT-CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CC
T ss_pred CCcccCCcCCEEECcCCcCCCCCcc-ccc-CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---cc
Confidence 3457788999999999999876776 554 788999999999998888888899999999999999888666652 67
Q ss_pred CCCCEEEccCccccccCCccccCC-CCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChh-ccCCCCccEE
Q 043235 85 LSLDWLDLSNNNFYGQLFPNYMNL-TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW-IGNFSVLSVL 162 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 162 (515)
++|++|++++|.+++..|..+... ++|++|++++|++++..|..+..+++|++|++++|.+++.+|.. +..+++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 888888888888887777777664 88888888888888778888888888888888888887666654 7888888888
Q ss_pred EccCccccccccccccCCC-CCcEEeCCCCCCCC-----cCC--CCcccEEEcccCceeeeccccccCCCCccEEeccCC
Q 043235 163 LMSENYLQGNIPVQLNNLK-SLEFIDLSENSLIS-----LSN--LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234 (515)
Q Consensus 163 ~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~-----l~~--l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n 234 (515)
++++|.+.+.+|..+..++ +|++|++++|++.. +.. ++.|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 8888888877777777776 78888888776631 112 556777777777777777777777777777777777
Q ss_pred ccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCC
Q 043235 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN 314 (515)
Q Consensus 235 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 314 (515)
++++..|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|..+.+++.|+.+....+......
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-- 506 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI-- 506 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC--
Confidence 777677777777777777777777777667777777777777777777777667776666666665544322111000
Q ss_pred CCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCccc---------------
Q 043235 315 VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSGE--------------- 376 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~--------------- 376 (515)
+.. +.....+..-.+..+.... .....+++|++|++++|++++.
T Consensus 507 ---p~~---------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 507 ---PKW---------------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp ---CGG---------------GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred ---ChH---------------HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 000 0000001111111111100 0012245555555555555544
Q ss_pred -------------------------------------------------------cccchhccccCCeeccCCccccccC
Q 043235 377 -------------------------------------------------------IPWKIGQLQNIRALNLSNNLLSGAI 401 (515)
Q Consensus 377 -------------------------------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 401 (515)
+|..+..+++|++|+|++|++++.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 4444556788999999999999999
Q ss_pred hhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCC
Q 043235 402 PESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 402 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~ 469 (515)
|..|+.+++|+.|+|++|++++.+|..+.++++|+.|||++|+++|.+|. ...+..++.+++.+|+..
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999999999999999999998 567888999999998653
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-50 Score=423.20 Aligned_cols=468 Identities=20% Similarity=0.207 Sum_probs=316.8
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+.+++|++++|.+++..|..+.. +++|++|+|++|.+.+..|.+|.++++|++|++++|.++ .++...+
T Consensus 24 l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 101 (606)
T 3t6q_A 24 LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL 101 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred cccCcCCCCCcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence 45667666778999999999998555555555 789999999999999888899999999999999999998 4544456
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc-
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS- 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~- 160 (515)
.++++|++|++++|.+++..+..+.++++|++|++++|++.+.....+..+++|++|++++|.+++..+..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 8899999999999999877677888999999999999998875545555688899999999988877777788888888
Q ss_pred -EEEccCccccccccccccCC---------------------------------------------------CCCcEEeC
Q 043235 161 -VLLMSENYLQGNIPVQLNNL---------------------------------------------------KSLEFIDL 188 (515)
Q Consensus 161 -~L~l~~n~l~~~~~~~l~~l---------------------------------------------------~~L~~L~L 188 (515)
+|++++|.+.+..|..+... .+|+.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 77888887776554433211 03445555
Q ss_pred CCCCCCCc-----CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCC
Q 043235 189 SENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGR 263 (515)
Q Consensus 189 ~~n~l~~l-----~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 263 (515)
++|.+..+ ..+++|++|++++|.++. +|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 55555332 234556666666666553 344555555666666666665555555555555566666665555533
Q ss_pred CC-ccccCCCCCCEEECCCCcCcCCC--CccccCCcccccccCCCCCcccccC-CCCCCcc-----ccCCcccccCcccc
Q 043235 264 IP-NQLCQLRKLSIMDLSRNRLNGPI--PSCLGNVPFWREATDDDSSEFFYAN-NVDSPVA-----YYNSSLELQLPVEL 334 (515)
Q Consensus 264 ~~-~~~~~l~~L~~L~L~~n~i~~~~--p~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~ 334 (515)
++ ..+..+++|++|++++|.+.+.. +..+..++.|+.+....+....... ....... .......... ...
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~ 419 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-AQS 419 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-TCC
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-cch
Confidence 32 23555555555555555555433 4445555555444333221111000 0000000 0000000000 000
Q ss_pred ccccccccceeeeccCccccc---cccccccCCEEEcCCCcCccc---cccchhccccCCeeccCCccccccChhhhcCc
Q 043235 335 HFRQDQQVGAKFVTKNRYEFF---IGSNLNYMAGLDLSGNEFSGE---IPWKIGQLQNIRALNLSNNLLSGAIPESFSNL 408 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 408 (515)
.+.....+..-....+..... ....+++|++|++++|++++. .+..+..+++|++|++++|++++..|..|..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 011111222222222222111 123488999999999999863 23568899999999999999998889999999
Q ss_pred cCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCcc
Q 043235 409 KMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMI 474 (515)
Q Consensus 409 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l 474 (515)
++|++|+|++|++++..|..+..++.| .|++++|++++.+|. ...+.+++.+.+.|||+.|.|+.
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999999 999999999988887 46788999999999999998874
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.9e-49 Score=413.85 Aligned_cols=448 Identities=18% Similarity=0.115 Sum_probs=310.9
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|.+++..+..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+
T Consensus 23 l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~ 100 (606)
T 3vq2_A 23 LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSF 100 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSS
T ss_pred cccCCCCCCCCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhc
Confidence 45677767788999999999998444445544 789999999999999888888999999999999999998 5644556
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCC-cCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG-KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 889999999999999987777789999999999999999885 4588899999999999999988876666555544333
Q ss_pred ----EEEccCccccccccccc-----------------------------------------------------------
Q 043235 161 ----VLLMSENYLQGNIPVQL----------------------------------------------------------- 177 (515)
Q Consensus 161 ----~L~l~~n~l~~~~~~~l----------------------------------------------------------- 177 (515)
+|++++|.+.+..+..+
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 55555555553333222
Q ss_pred ---------------------cCCCCCcEEeCCCCCCCCc---CCCCcccEEEcccCceeeeccccccCCCCccEEeccC
Q 043235 178 ---------------------NNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233 (515)
Q Consensus 178 ---------------------~~l~~L~~L~L~~n~l~~l---~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~ 233 (515)
..+++|+.|++++|.+..+ ..+++|++|++++|.+. .+| .+ .+++|++|++++
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTM 337 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEES
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccc-cC-CCCccceeeccC
Confidence 2233444444444444322 24445666666666663 233 23 555566666665
Q ss_pred CccCCcCchhhhcCCCcCEEEccCccCCCC--CCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccc
Q 043235 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGR--IPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFY 311 (515)
Q Consensus 234 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~ 311 (515)
|+..+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+.+ +|..+..++.|+.+....+.....
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 5433222 344566666666666666644 25556666666666666666653 445555555555544332211110
Q ss_pred cCCCCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCcc-ccccchhccccC
Q 043235 312 ANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSG-EIPWKIGQLQNI 387 (515)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 387 (515)
... . .+.....+..-....+.... .....+++|++|++++|.+++ .+|..+..+++|
T Consensus 415 ~~~----~---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 415 TEF----S---------------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TTT----T---------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cCh----h---------------hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 000 0 00000001111111111111 011347899999999999997 478889999999
Q ss_pred CeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccC-CCCcccccCC
Q 043235 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA-TFDDCSYKGN 466 (515)
Q Consensus 388 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~l~~~~~~gn 466 (515)
++|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|++++|+++...+....+. +++.+.+.||
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCC
Confidence 999999999999999999999999999999999999889999999999999999999995444445554 5999999999
Q ss_pred CCCCCCccCC
Q 043235 467 SALCGSMIKR 476 (515)
Q Consensus 467 ~~~c~~~l~~ 476 (515)
|+.|+|++..
T Consensus 556 ~~~c~c~~~~ 565 (606)
T 3vq2_A 556 SVACICEHQK 565 (606)
T ss_dssp CCCCSSTTHH
T ss_pred CcccCCccHH
Confidence 9999998753
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-48 Score=411.74 Aligned_cols=468 Identities=19% Similarity=0.203 Sum_probs=289.6
Q ss_pred CCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHh
Q 043235 3 PRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVS 82 (515)
Q Consensus 3 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~ 82 (515)
..+|..-.+++++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|...|.
T Consensus 17 ~~ip~~~~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 94 (680)
T 1ziw_A 17 TQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFA 94 (680)
T ss_dssp SSCCSCSCTTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred cccccccCCCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhc
Confidence 4455544566777777777776 344332333667777777777777666666777777777777777766 56665556
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhcc--CCCCcc
Q 043235 83 SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG--NFSVLS 160 (515)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~ 160 (515)
++++|++|++++|.+++..+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 667777777777766655555666666666666666666665555566666666666666655544333222 223333
Q ss_pred EEEccCcccccc---------------------------------------------------ccccccCCC--CCcEEe
Q 043235 161 VLLMSENYLQGN---------------------------------------------------IPVQLNNLK--SLEFID 187 (515)
Q Consensus 161 ~L~l~~n~l~~~---------------------------------------------------~~~~l~~l~--~L~~L~ 187 (515)
+|++++|.+.+. .+..+..++ +|+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 333333333322 222232222 255555
Q ss_pred CCCCCCCC-----cCCCCcccEEEcccCceeeeccc---------------------------------cccCCCCccEE
Q 043235 188 LSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPI---------------------------------ALLRSSTLLTL 229 (515)
Q Consensus 188 L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~---------------------------------~~~~~~~L~~L 229 (515)
+++|++.. +..+++|++|++++|.+++..+. .+..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 55555532 22445555555555555544332 33445566666
Q ss_pred eccCCccCCcCchhhhcCCCcCEEEc----------------------------cCccCCCCCCccccCCCCCCEEECCC
Q 043235 230 DLRDNKLFGRIPHQINERSNLHVLLL----------------------------RGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 230 ~Ls~n~i~~~~~~~~~~l~~L~~L~L----------------------------~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
++++|++.+..+..|..+++|++|++ ++|++++..+.++..+++|++|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 66667776666665665555555554 44556656677788889999999999
Q ss_pred CcCcCCCC-ccccCCcccccccCCCCCcccccCC-------CCCCccccCCccc-ccCccccccccccccceeeeccCcc
Q 043235 282 NRLNGPIP-SCLGNVPFWREATDDDSSEFFYANN-------VDSPVAYYNSSLE-LQLPVELHFRQDQQVGAKFVTKNRY 352 (515)
Q Consensus 282 n~i~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
|.+.+.+| ..+.+++.++.+....+........ ............. ...+ ..+.....+..-.+..+..
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p--~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS--CTTTTCTTCCEEECCSSCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC--cccccCCCCCEEECCCCCC
Confidence 99877555 6777777777765544322111100 0000000000000 0000 0111222222223333332
Q ss_pred cccc---ccccccCCEEEcCCCcCccccc--------cchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcc
Q 043235 353 EFFI---GSNLNYMAGLDLSGNEFSGEIP--------WKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL 421 (515)
Q Consensus 353 ~~~~---~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 421 (515)
.... ...+++|++|++++|++++..+ ..+.++++|++|+|++|+++.+.+..|.++++|++|+|++|++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 2221 2457889999999999986422 2378899999999999999966667899999999999999999
Q ss_pred cccCCccccCCCCCCEEecccCcccccCCCC-c-ccCCCCcccccCCCCCCCCcc
Q 043235 422 SGQIPPQLTELNFLSNFNVSYNNLSGPIPDK-E-QFATFDDCSYKGNSALCGSMI 474 (515)
Q Consensus 422 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~-~~~~l~~~~~~gn~~~c~~~l 474 (515)
++..+..|..+++|+.|++++|++++..|.. . .+.+++.+.+.||||.|+|++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9777778899999999999999999887763 3 688999999999999999985
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-48 Score=421.73 Aligned_cols=467 Identities=20% Similarity=0.193 Sum_probs=353.2
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCccccc-CCccccCCCCCCEEECcCCcCcccCchHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGN-IPYSVGEMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
+..+|. ..+++++||+++|.+++..|..+.. +++|++|+|++|...+. .|.+|.++++|++|+|++|.++ .++...
T Consensus 16 L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~ 92 (844)
T 3j0a_A 16 LTQVPQ-VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDA 92 (844)
T ss_dssp SSCCCS-SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTS
T ss_pred CCCCCC-CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhH
Confidence 456777 7789999999999998655666655 89999999999955444 4888999999999999999998 554455
Q ss_pred HhCCCCCCEEEccCccccccCCcc--ccCCCCCCEEEcccCCCCCcCC-hhhhCCCCCcEEEcccCcCCCCcChhccCC-
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPN--YMNLTDLGSLYLDNNHFSGKMT-DGLLSSTLLRVLNVSNNMLSGDIPHWIGNF- 156 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 156 (515)
|.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 688999999999999998755554 8999999999999999987654 578999999999999999998888888877
Q ss_pred -CCccEEEccCccccccccccccCCCC------CcEEeCCCCCCCCc---------------------------------
Q 043235 157 -SVLSVLLMSENYLQGNIPVQLNNLKS------LEFIDLSENSLISL--------------------------------- 196 (515)
Q Consensus 157 -~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~l--------------------------------- 196 (515)
++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+...
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 78999999999988877776666655 89999998865210
Q ss_pred --------C--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCc
Q 043235 197 --------S--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPN 266 (515)
Q Consensus 197 --------~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 266 (515)
. ..+.|++|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|++++..+.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 0 125789999999999988888899999999999999999888888899999999999999999888888
Q ss_pred cccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccC--CCCCCccccCCcccc--c----Ccccccc--
Q 043235 267 QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYAN--NVDSPVAYYNSSLEL--Q----LPVELHF-- 336 (515)
Q Consensus 267 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~----~~~~~~~-- 336 (515)
.|..+++|++|++++|.+.+..+..+..++.|+.+....+....... .........+..... . ....+..
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCc
Confidence 89999999999999999988777788888888775544322111100 000000000000000 0 0000000
Q ss_pred ----------ccccccceeeeccCccccc----cccccccCCEEEcCCCcCc-----cccccchhccccCCeeccCCccc
Q 043235 337 ----------RQDQQVGAKFVTKNRYEFF----IGSNLNYMAGLDLSGNEFS-----GEIPWKIGQLQNIRALNLSNNLL 397 (515)
Q Consensus 337 ----------~~~~~~~~~~~~~~~~~~~----~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l 397 (515)
.....+..-.+..+..... ....+++|+.|+|++|.++ +..+..|..+++|++|+|++|++
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 0111122222222222211 1123567777788877775 33345678889999999999999
Q ss_pred cccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCCCCccC
Q 043235 398 SGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
++..|..|..+++|++|+|++|++++..+..+. ++|+.|++++|++++..|.. +..+..+++.|||+.|+|++.
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred cccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 988888899999999999999999977776666 88999999999999988853 668999999999999988753
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-48 Score=405.20 Aligned_cols=391 Identities=17% Similarity=0.231 Sum_probs=286.7
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcc------------------------------------------
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNF------------------------------------------ 48 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i------------------------------------------ 48 (515)
.+++.|+|+++.+.|.+|..++. +++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 47999999999999999999987 89999999999854
Q ss_pred ------------------------------------cccCCccccCCCCCCEEECcCCcCccc-----------------
Q 043235 49 ------------------------------------EGNIPYSVGEMKELTILDLSRNNFTGK----------------- 75 (515)
Q Consensus 49 ------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 75 (515)
++ +|..++++++|++|+|++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 33 566677777777777777777643
Q ss_pred CchHHHh--CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCC-CCC-cCChhhhCC------CCCcEEEcccCcC
Q 043235 76 LPRPIVS--SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSG-KMTDGLLSS------TLLRVLNVSNNML 145 (515)
Q Consensus 76 l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~l 145 (515)
+|..+ . ++++|++|++++|.+.+..|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+
T Consensus 239 ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred Cchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 66554 4 57777777777777766667777777777777777776 665 566666554 6777777777777
Q ss_pred CCCcCh--hccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC----CCCc-ccEEEcccCceeeeccc
Q 043235 146 SGDIPH--WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS----NLSF-VKHIYLQNNAIKGLIPI 218 (515)
Q Consensus 146 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~----~l~~-L~~L~L~~n~i~~~~~~ 218 (515)
+ .+|. .++.+++|++|++++|.+.+.+| .+..+++|++|++++|++..++ .++. |++|++++|.++. +|.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cch
Confidence 7 5666 67777777777777777776666 6666777777777777664332 4556 7777777777763 455
Q ss_pred cccCCC--CccEEeccCCccCCcCchhhh-------cCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC
Q 043235 219 ALLRSS--TLLTLDLRDNKLFGRIPHQIN-------ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289 (515)
Q Consensus 219 ~~~~~~--~L~~L~Ls~n~i~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p 289 (515)
.+..+. +|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 555443 677777777777766666666 5667777777777777444444555677777777777776 333
Q ss_pred ccccC-CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEc
Q 043235 290 SCLGN-VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDL 368 (515)
Q Consensus 290 ~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 368 (515)
..... .. .....+++|++|+|
T Consensus 474 ~~~~~~~~----------------------------------------------------------~~~~~l~~L~~L~L 495 (636)
T 4eco_A 474 KNSLKDEN----------------------------------------------------------ENFKNTYLLTSIDL 495 (636)
T ss_dssp SSSSEETT----------------------------------------------------------EECTTGGGCCEEEC
T ss_pred HHHhcccc----------------------------------------------------------ccccccCCccEEEC
Confidence 22110 00 00012558999999
Q ss_pred CCCcCccccccchh--ccccCCeeccCCccccccChhhhcCccCCCeeeC------CCCcccccCCccccCCCCCCEEec
Q 043235 369 SGNEFSGEIPWKIG--QLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL------SRNKLSGQIPPQLTELNFLSNFNV 440 (515)
Q Consensus 369 s~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~l~~l~~L~~L~L 440 (515)
++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++
T Consensus 496 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 999999 7777776 89999999999999996 8889999999999999 567788899999999999999999
Q ss_pred ccCcccccCCCCcccCCCCcccccCCCCCC
Q 043235 441 SYNNLSGPIPDKEQFATFDDCSYKGNSALC 470 (515)
Q Consensus 441 s~N~l~~~~p~~~~~~~l~~~~~~gn~~~c 470 (515)
++|++ +.+|... ..+++.+.+.+|+..|
T Consensus 574 s~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 574 GSNDI-RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred CCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence 99999 6777743 3789999999999887
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-47 Score=395.87 Aligned_cols=426 Identities=19% Similarity=0.135 Sum_probs=326.1
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|.+++..+..+.. +++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...|
T Consensus 19 l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 96 (570)
T 2z63_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAF 96 (570)
T ss_dssp CSSCCSSSCSSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTT
T ss_pred ccccCCCccccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhh
Confidence 45677666778999999999998444444544 899999999999999888889999999999999999998 6776667
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc-
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL- 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L- 159 (515)
.++++|++|++++|+++...+..++++++|++|++++|.+.+. .|..+.++++|++|++++|.+++..+..++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 8999999999999999876666799999999999999999863 68899999999999999999987777777777777
Q ss_pred ---cEEEccCccccccccccccCCCCCcEEeCCCCCC-------------------------------------------
Q 043235 160 ---SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL------------------------------------------- 193 (515)
Q Consensus 160 ---~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l------------------------------------------- 193 (515)
+.+++++|.+.+..+..+... +|+.|++++|..
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 788888887776555544433 445554444310
Q ss_pred --------------------CCcCCCCcccEEEcccCceeeecccccc--------------------CCCCccEEeccC
Q 043235 194 --------------------ISLSNLSFVKHIYLQNNAIKGLIPIALL--------------------RSSTLLTLDLRD 233 (515)
Q Consensus 194 --------------------~~l~~l~~L~~L~L~~n~i~~~~~~~~~--------------------~~~~L~~L~Ls~ 233 (515)
..+..++.|++|++++|.+++ +|..+. .+++|++|++++
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~ 334 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcC
Confidence 001123444555555554443 233333 344555555555
Q ss_pred CccCCcCchhhhcCCCcCEEEccCccCCCCC--CccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccc
Q 043235 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRI--PNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFY 311 (515)
Q Consensus 234 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~ 311 (515)
|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..++.|+.+....+.....
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 554433332 56788999999999988554 67788899999999999998765444 77777666543332110000
Q ss_pred cCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeec
Q 043235 312 ANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALN 391 (515)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 391 (515)
. .......+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 412 ~----------------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 412 S----------------------------------------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp T----------------------------------------TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred c----------------------------------------chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 0 000113478999999999999988899999999999999
Q ss_pred cCCcccc-ccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCC
Q 043235 392 LSNNLLS-GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 392 Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~ 469 (515)
+++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. ...+.+++.+.+.+|++.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 9999997 56889999999999999999999988899999999999999999999998776 567889999999999999
Q ss_pred CCCcc
Q 043235 470 CGSMI 474 (515)
Q Consensus 470 c~~~l 474 (515)
|.|+.
T Consensus 532 ~~~~~ 536 (570)
T 2z63_A 532 CSCPR 536 (570)
T ss_dssp CCTTT
T ss_pred CCCcc
Confidence 98875
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.9e-46 Score=392.84 Aligned_cols=441 Identities=18% Similarity=0.141 Sum_probs=333.9
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
.+..+++|++|++++|++++..|..+.. +++|++|+|++|.+++..|.+|+++++|++|++++|.++ .++...+..++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~ 129 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQK 129 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCT
T ss_pred HhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCC
Confidence 4678999999999999998666666665 899999999999999888999999999999999999998 66545568899
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCc--EEEcccCcCCCCcChhccCC-------
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR--VLNVSNNMLSGDIPHWIGNF------- 156 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~l------- 156 (515)
+|++|++++|.+++.....+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+++..|..+...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 999999999999876556666799999999999999988888899999999 88999998876655544321
Q ss_pred --------------------------------------------CCccEEEccCccccccccccccCCCCCcEEeCCCCC
Q 043235 157 --------------------------------------------SVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192 (515)
Q Consensus 157 --------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 192 (515)
.+++.|++++|.+.+..+..|..+++|++|++++|+
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 156777777787777767778888888888888888
Q ss_pred CCCcC----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCc-hhhhcCCCcCEEEccCccCCCCC--C
Q 043235 193 LISLS----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP-HQINERSNLHVLLLRGNYLQGRI--P 265 (515)
Q Consensus 193 l~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~--~ 265 (515)
+..++ .+++|++|++++|.+++..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|++++.. +
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 76553 56778888888888887777777888888888888887765444 34777788888888888777554 5
Q ss_pred ccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCC--C---CCCccc--cCCcccccCcccccccc
Q 043235 266 NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN--V---DSPVAY--YNSSLELQLPVELHFRQ 338 (515)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~--~---~~~~~~--~~~~~~~~~~~~~~~~~ 338 (515)
..+..+++|++|++++|++.+..|..+..++.|+.+....+........ . ...... .........+ ..+..
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 447 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--QLFDG 447 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT--TTTTT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH--HHHhC
Confidence 6677778888888888877777777777777776655443221111000 0 000000 0000000000 01111
Q ss_pred ccccceeeeccCcccc------ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCC
Q 043235 339 DQQVGAKFVTKNRYEF------FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIE 412 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 412 (515)
...+..-.+..+.... .....+++|++|++++|++++..|..|..+++|++|+|++|++++..|..|..++.|
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 2222222233332221 123458999999999999998889999999999999999999999999999999999
Q ss_pred eeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 413 SLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 413 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
+|++++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus 527 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999988899999999999999999999987764
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-46 Score=390.58 Aligned_cols=418 Identities=18% Similarity=0.171 Sum_probs=326.0
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.++|++|++++|++++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+
T Consensus 17 l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 94 (549)
T 2z81_A 17 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWF 94 (549)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHH
T ss_pred cccccccCCCCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHh
Confidence 45677777789999999999999655666655 899999999999999888899999999999999999999 7777777
Q ss_pred hCCCCCCEEEccCcccccc-CCccccCCCCCCEEEcccCC-CCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 82 SSCLSLDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNH-FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
.++++|++|++++|.+++. .+..++++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 9999999999999999863 45789999999999999998 444445689999999999999999998889999999999
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeeeccc-------------
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGLIPI------------- 218 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~~~~------------- 218 (515)
++|++++|.+.......+..+++|++|++++|++..+. .++.|++|++++|.+++..+.
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 99999999887443333456889999999998886531 244555555555544321110
Q ss_pred --------------------------------------------------cccCCCCccEEeccCCccCCcCchhh-hcC
Q 043235 219 --------------------------------------------------ALLRSSTLLTLDLRDNKLFGRIPHQI-NER 247 (515)
Q Consensus 219 --------------------------------------------------~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~l 247 (515)
.+....+|+.|++++|++. .+|..+ ..+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcC
Confidence 0112356888999999987 556555 578
Q ss_pred CCcCEEEccCccCCCCCC---ccccCCCCCCEEECCCCcCcCCCC--ccccCCcccccccCCCCCcccccCCCCCCcccc
Q 043235 248 SNLHVLLLRGNYLQGRIP---NQLCQLRKLSIMDLSRNRLNGPIP--SCLGNVPFWREATDDDSSEFFYANNVDSPVAYY 322 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~~~~p--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 322 (515)
++|++|++++|++++..| ..+..+++|++|++++|++++..+ ..+..++.|+.+....+....
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------ 401 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP------------ 401 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC------------
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc------------
Confidence 999999999999987653 346788999999999999975432 345566655554332211000
Q ss_pred CCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccCh
Q 043235 323 NSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIP 402 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 402 (515)
+.. ....+++|++|++++|+++ .++..+ .++|++|++++|++++..
T Consensus 402 -------------------lp~-----------~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~- 447 (549)
T 2z81_A 402 -------------------MPD-----------SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS- 447 (549)
T ss_dssp -------------------CCS-----------CCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC-
T ss_pred -------------------CCh-----------hhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc-
Confidence 000 0123678999999999998 444433 268999999999998643
Q ss_pred hhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCc
Q 043235 403 ESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|. ...+..++.+++.||++.|+|+
T Consensus 448 ---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57899999999999999 6665 46799999999999999998887 5688999999999999999887
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-46 Score=393.64 Aligned_cols=374 Identities=20% Similarity=0.257 Sum_probs=317.1
Q ss_pred CchhHHhcccCCcEEECcCCccccc-----------------CCcccc--CCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 27 LPENLGIIFQKLIYLDMSKNNFEGN-----------------IPYSVG--EMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 27 ~p~~~~~~~~~L~~L~L~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
+|+.+.. +++|++|+|++|.+++. +|..+. ++++|++|++++|.+.+.+|..+ .++++|
T Consensus 198 ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L 275 (636)
T 4eco_A 198 VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEM 275 (636)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSC
T ss_pred CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCC
Confidence 7887776 79999999999999975 899999 99999999999999998899765 789999
Q ss_pred CEEEccCcc-ccc-cCCccccCC------CCCCEEEcccCCCCCcCCh--hhhCCCCCcEEEcccCcCCCCcChhccCCC
Q 043235 88 DWLDLSNNN-FYG-QLFPNYMNL------TDLGSLYLDNNHFSGKMTD--GLLSSTLLRVLNVSNNMLSGDIPHWIGNFS 157 (515)
Q Consensus 88 ~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 157 (515)
++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|++|++++|.+++.+| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 887 788888776 99999999999999 7787 89999999999999999998888 899999
Q ss_pred CccEEEccCccccccccccccCCCC-CcEEeCCCCCCCCcCC------CCcccEEEcccCceeeecccccc-------CC
Q 043235 158 VLSVLLMSENYLQGNIPVQLNNLKS-LEFIDLSENSLISLSN------LSFVKHIYLQNNAIKGLIPIALL-------RS 223 (515)
Q Consensus 158 ~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~l~~------l~~L~~L~L~~n~i~~~~~~~~~-------~~ 223 (515)
+|++|++++|++. .+|..+..+++ |++|++++|++..++. +++|++|++++|.+++..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 9999999999999 78888999999 9999999999977652 34799999999999998888888 78
Q ss_pred CCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC-------CCCEEECCCCcCcCCCCccccCCc
Q 043235 224 STLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR-------KLSIMDLSRNRLNGPIPSCLGNVP 296 (515)
Q Consensus 224 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-------~L~~L~L~~n~i~~~~p~~~~~l~ 296 (515)
++|++|++++|++++..+..+..+++|++|+|++|+++...+..+.... +|++|++++|+++ .+|..+..
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-- 509 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-- 509 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--
Confidence 8999999999999965555667799999999999999944444444333 9999999999998 45544320
Q ss_pred ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc
Q 043235 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE 376 (515)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 376 (515)
..+++|++|+|++|++++
T Consensus 510 -------------------------------------------------------------~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 510 -------------------------------------------------------------TTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp -------------------------------------------------------------TTCTTCCEEECCSSCCSS-
T ss_pred -------------------------------------------------------------ccCCCcCEEECCCCCCCC-
Confidence 126789999999999996
Q ss_pred cccchhccccCCeecc------CCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 377 IPWKIGQLQNIRALNL------SNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 377 ~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|+++ .+|..+. ++|+.|++++|++...-+
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 8889999999999999 567888899999999999999999999995 7787766 799999999999876443
Q ss_pred CCc---ccCCCCcccccCCCCCCCCc
Q 043235 451 DKE---QFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 451 ~~~---~~~~l~~~~~~gn~~~c~~~ 473 (515)
... .......+.+......|+|+
T Consensus 605 ~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 605 SYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp TTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred HhcchhhhcccceeecCCccccCCCc
Confidence 311 12333344455555555554
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.1e-46 Score=383.53 Aligned_cols=419 Identities=20% Similarity=0.191 Sum_probs=321.6
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
|..+|..-.++|++|++++|.+++..|..+.. +++|++|++++|++++..|.+|.++++|++|++++|+++ .+|..
T Consensus 12 l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 87 (520)
T 2z7x_B 12 LIHVPKDLSQKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-- 87 (520)
T ss_dssp CSSCCCSCCTTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred cccccccccccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence 44566655689999999999998444455554 789999999999999888889999999999999999998 78875
Q ss_pred hCCCCCCEEEccCccccc-cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC--cEEEcccCcC--CCCcChhccC-
Q 043235 82 SSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL--RVLNVSNNML--SGDIPHWIGN- 155 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~- 155 (515)
.+++|++|++++|.+++ ..|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccc
Confidence 68999999999999986 356889999999999999999875 456677777 9999999988 6666666655
Q ss_pred -------------------------CCCccEEEccCcc-------ccccccccccCCCCCcEEeCCCCCCCCcC------
Q 043235 156 -------------------------FSVLSVLLMSENY-------LQGNIPVQLNNLKSLEFIDLSENSLISLS------ 197 (515)
Q Consensus 156 -------------------------l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~l~------ 197 (515)
+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+....
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHH
Confidence 4455555555554 443333 4556666666666666553210
Q ss_pred --CCCcccEEEcccCceeeeccccc-----cCCCCccEEeccCCccCCcCc-hhhhcC---CCcCEEEccCccCCCCCCc
Q 043235 198 --NLSFVKHIYLQNNAIKGLIPIAL-----LRSSTLLTLDLRDNKLFGRIP-HQINER---SNLHVLLLRGNYLQGRIPN 266 (515)
Q Consensus 198 --~l~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~Ls~n~i~~~~~-~~~~~l---~~L~~L~L~~n~i~~~~~~ 266 (515)
..+.|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+....
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 318 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-- 318 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--
Confidence 23578999999999987778777 8888999999999988 344 455444 67999999999887432
Q ss_pred cccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceee
Q 043235 267 QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKF 346 (515)
Q Consensus 267 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
.+..+++|++|++++|++++..|..+..++.|+.+....+..... .
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-------------------------------~--- 364 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-------------------------------S--- 364 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-------------------------------H---
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-------------------------------c---
Confidence 236789999999999999988888888888777644332110000 0
Q ss_pred eccCccccccccccccCCEEEcCCCcCcccccc-chhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccC
Q 043235 347 VTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW-KIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425 (515)
Q Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 425 (515)
........+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+
T Consensus 365 -----~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~i 436 (520)
T 2z7x_B 365 -----KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SI 436 (520)
T ss_dssp -----HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CC
T ss_pred -----cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-cc
Confidence 0000113478999999999999974665 488899999999999999877777664 79999999999999 78
Q ss_pred CccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCccC
Q 043235 426 PPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 426 ~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
|..+..+++|++|++++|++++..+. ...+..++.+.+.||++.|.|++.
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 88888999999999999999954443 567888999999999999998764
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-45 Score=384.44 Aligned_cols=418 Identities=17% Similarity=0.113 Sum_probs=292.3
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
.+..+++|++|++++|.+++..|..+.. +++|++|+|++|.+++..|.+|+++++|++|++++|.++ .++...+.+++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCC
Confidence 4678999999999999998544555554 899999999999999888999999999999999999998 66655568899
Q ss_pred CCCEEEccCccccc-cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCc----EEEcccCcCCCCcChh--------
Q 043235 86 SLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR----VLNVSNNMLSGDIPHW-------- 152 (515)
Q Consensus 86 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~-------- 152 (515)
+|++|++++|.+++ ..|..++++++|++|++++|++++..+..+..+++|+ +|++++|.+++..+..
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 99999999999976 4588899999999999999999877666555444332 4555555544222221
Q ss_pred ------------------------------------------------------------------------ccCCCCcc
Q 043235 153 ------------------------------------------------------------------------IGNFSVLS 160 (515)
Q Consensus 153 ------------------------------------------------------------------------~~~l~~L~ 160 (515)
+..+++|+
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence 23344555
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~ 238 (515)
.|++++|.+. .+| .+..+++|+.|++++|.+..++ .+++|++|++++|...+.. .+..+++|++|++++|++++
T Consensus 289 ~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 289 AMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred EEEecCccch-hhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 5555555554 334 5667777888888887775444 5566666666666443322 45566666666666666654
Q ss_pred c--CchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC-ccccCCcccccccCCCCCcccccCCC
Q 043235 239 R--IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP-SCLGNVPFWREATDDDSSEFFYANNV 315 (515)
Q Consensus 239 ~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~~ 315 (515)
. .+..+..+++|++|++++|.+++ .|..+..+++|++|++++|++.+..| ..+..++.|+.+....+........
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 442 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG- 442 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-
T ss_pred CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-
Confidence 4 25566666666666666666653 34556666666666666666665555 4555555555544332221110000
Q ss_pred CCCccccCCcccccCccccccccccccceeeeccCcccc----ccccccccCCEEEcCCCcCccccccchhccccCCeec
Q 043235 316 DSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF----FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALN 391 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 391 (515)
. +.....+..-....+.... .....+++|++|++++|++++..|..+..+++|++|+
T Consensus 443 ----~---------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 443 ----I---------------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp ----T---------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ----h---------------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 0 0000001111111111110 1123479999999999999988899999999999999
Q ss_pred cCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCC-CCCEEecccCcccccCCC
Q 043235 392 LSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELN-FLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 392 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~ 451 (515)
|++|++++..|..|..+++|++|+|++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999888999999999999999999999 6777799997 599999999999987775
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-45 Score=392.65 Aligned_cols=392 Identities=18% Similarity=0.212 Sum_probs=280.5
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEEC-cCCccccc--------------------------------------
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDM-SKNNFEGN-------------------------------------- 51 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L-~~n~i~~~-------------------------------------- 51 (515)
.+++.|+|+++++.|.+|+.++. +++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999999999999987 899999999 77765443
Q ss_pred --------------------------------------CCccccCCCCCCEEECcCCcCcc-----------------cC
Q 043235 52 --------------------------------------IPYSVGEMKELTILDLSRNNFTG-----------------KL 76 (515)
Q Consensus 52 --------------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~l 76 (515)
+|..|+++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 56677778888888888888875 27
Q ss_pred chHH-HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCC-CCC-cCChhhhCCC-------CCcEEEcccCcCC
Q 043235 77 PRPI-VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSG-KMTDGLLSST-------LLRVLNVSNNMLS 146 (515)
Q Consensus 77 ~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~l~ 146 (515)
|..+ |.++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..++ +|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 7665 3367888888888887777777778888888888888887 765 5666555444 7888888888887
Q ss_pred CCcCh--hccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC----CCCc-ccEEEcccCceeeecccc
Q 043235 147 GDIPH--WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS----NLSF-VKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 147 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~----~l~~-L~~L~L~~n~i~~~~~~~ 219 (515)
.+|. .++++++|+.|++++|.+. .+| .+..+++|+.|++++|++..++ .++. |++|++++|.++. +|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cchh
Confidence 6676 7778888888888888877 566 6777788888888888775444 4566 7888888888773 4566
Q ss_pred ccCCCC--ccEEeccCCccCCcCchh---hh--cCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccc
Q 043235 220 LLRSST--LLTLDLRDNKLFGRIPHQ---IN--ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 220 ~~~~~~--L~~L~Ls~n~i~~~~~~~---~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~ 292 (515)
+..+.. |+.|++++|++.+.+|.. +. .+++|+.|+|++|+++...+..+..+++|+.|++++|+++ .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 655543 888888888877655422 12 2347788888888887433333447778888888888776 444332
Q ss_pred cCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCc
Q 043235 293 GNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNE 372 (515)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 372 (515)
..... .....+++|++|+|++|+
T Consensus 717 ~~~~~---------------------------------------------------------~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 717 LKPKD---------------------------------------------------------GNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCTT---------------------------------------------------------SCCTTGGGCCEEECCSSC
T ss_pred hcccc---------------------------------------------------------ccccccCCccEEECCCCC
Confidence 21100 000124577778888887
Q ss_pred Cccccccchh--ccccCCeeccCCccccccChhhhcCccCCCeeeCCC------CcccccCCccccCCCCCCEEecccCc
Q 043235 373 FSGEIPWKIG--QLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSR------NKLSGQIPPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 373 l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L~Ls~N~ 444 (515)
++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|+
T Consensus 740 L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 740 LT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred Cc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 77 6666665 77788888888888775 577777778888887765 66777777777778888888888888
Q ss_pred ccccCCCCcccCCCCcccccCCCCC
Q 043235 445 LSGPIPDKEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 445 l~~~~p~~~~~~~l~~~~~~gn~~~ 469 (515)
+ +.+|.. ...+++.+++.+|+..
T Consensus 818 L-~~Ip~~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 818 I-RKVDEK-LTPQLYILDIADNPNI 840 (876)
T ss_dssp C-CBCCSC-CCSSSCEEECCSCTTC
T ss_pred C-CccCHh-hcCCCCEEECCCCCCC
Confidence 7 666664 2357777777777754
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-45 Score=370.86 Aligned_cols=370 Identities=19% Similarity=0.206 Sum_probs=312.8
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.++.+++.++ .+|. + .++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 357899999998 8887 3 5799999999999998889999999999999999999976787777899999999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChh--hhCCCCCcEEEcccCcCCCCcChh-ccCCCCccEEEccCccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDG--LLSSTLLRVLNVSNNMLSGDIPHW-IGNFSVLSVLLMSENYL 169 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l 169 (515)
++|.+++..+..|.++++|++|++++|++++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755544 889999999999999999887776 89999999999999999
Q ss_pred cccccccccCC--CCCcEEeCCCCCCCCcC-------------CCCcccEEEcccCceeeeccccccCC---CCccEEec
Q 043235 170 QGNIPVQLNNL--KSLEFIDLSENSLISLS-------------NLSFVKHIYLQNNAIKGLIPIALLRS---STLLTLDL 231 (515)
Q Consensus 170 ~~~~~~~l~~l--~~L~~L~L~~n~l~~l~-------------~l~~L~~L~L~~n~i~~~~~~~~~~~---~~L~~L~L 231 (515)
.+..+..+..+ .+|+.|++++|.+..+. .+++|++|++++|.+++..+..+... .+|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98888877766 78999999999987654 34679999999999988777666543 78999999
Q ss_pred cCCccCCc----------Cchhhhc--CCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 232 RDNKLFGR----------IPHQINE--RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 232 s~n~i~~~----------~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
++|.+.+. .+..+.. .++|+.|++++|++++..+..+..+++|++|++++|.+++..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----- 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence 98865432 1122222 358889999999988888888888899999999999887655555433
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW 379 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 379 (515)
+++|++|+|++|.+++..+.
T Consensus 322 ------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 322 ------------------------------------------------------------LTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp ------------------------------------------------------------CTTCCEEECCSSCCCEECGG
T ss_pred ------------------------------------------------------------cccCCEEECCCCccCCcChh
Confidence 56788899999998877788
Q ss_pred chhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCC
Q 043235 380 KIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK 452 (515)
Q Consensus 380 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 452 (515)
.|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|..
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 8888899999999999998888888888999999999999998777777888899999999999999888863
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7e-44 Score=380.65 Aligned_cols=448 Identities=19% Similarity=0.158 Sum_probs=301.6
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.+|+++++++ .+|..+ .+++++|++++|.+++..+.+|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus 6 ~~~~~cs~~~L~-~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 6 HEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp SSEEECCSSCCS-SCCSCS---CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEEC
T ss_pred CCeeECCCCCcc-cccccc---CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEEC
Confidence 368999999998 899866 479999999999999888888999999999999999999 566666789999999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
++|.++...+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999977666899999999999999999988888999999999999999999988888999999999999999999977
Q ss_pred cccccc--CCCCCcEEeCCCCCCCCcCC--------------------------------CCcccEEEcccCceeeeccc
Q 043235 173 IPVQLN--NLKSLEFIDLSENSLISLSN--------------------------------LSFVKHIYLQNNAIKGLIPI 218 (515)
Q Consensus 173 ~~~~l~--~l~~L~~L~L~~n~l~~l~~--------------------------------l~~L~~L~L~~n~i~~~~~~ 218 (515)
.+..+. .+++|+.|++++|++..+.. .+.|++|++++|.+++..+.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 776554 56889999999998754321 14456666666666666666
Q ss_pred cccCCCC--ccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccC--------------------------
Q 043235 219 ALLRSST--LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-------------------------- 270 (515)
Q Consensus 219 ~~~~~~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------------------------- 270 (515)
.+..++. |++|++++|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 6655543 666666666666666666666666666666666666555544444
Q ss_pred -------CCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCc--ccccCC---------CCCCccccCCcccccCcc
Q 043235 271 -------LRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE--FFYANN---------VDSPVAYYNSSLELQLPV 332 (515)
Q Consensus 271 -------l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~ 332 (515)
+++|++|++++|.+.+..+..+.+++.|+.+....+.. ...... ........ .......+
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~-n~l~~~~~- 398 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-NKISKIES- 398 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT-SCCCEECT-
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC-CCCCeECh-
Confidence 45555555555555555555555555555443322110 000000 00000000 00000000
Q ss_pred ccccccccccceeeeccCcccc----ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCcccc--ccChhhhc
Q 043235 333 ELHFRQDQQVGAKFVTKNRYEF----FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS--GAIPESFS 406 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~ 406 (515)
..+.....+..-.+..+.... .....+++|++|++++|++.+..+..|..+++|++|++++|.+. +..|..|.
T Consensus 399 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 399 -DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp -TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred -hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 001111111111222222110 11123556666666666666555556666666666666666654 34666777
Q ss_pred CccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC---------CCcccCCCCcccccCCCC
Q 043235 407 NLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP---------DKEQFATFDDCSYKGNSA 468 (515)
Q Consensus 407 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p---------~~~~~~~l~~~~~~gn~~ 468 (515)
.+++|++|++++|++++..+..|.++++|++|++++|++++..+ ....+..++.+.+.+|..
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 77777888888887776666677777788888888887775421 134556677777777654
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-45 Score=380.36 Aligned_cols=400 Identities=18% Similarity=0.162 Sum_probs=324.9
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
.+..+++|++|++++|+++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+..++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccc
Confidence 4678999999999999998 454443444899999999999999888899999999999999999998 77765568899
Q ss_pred CCCEEEccCccccc-cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC----cEEEcccCcCCCCcC----------
Q 043235 86 SLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL----RVLNVSNNMLSGDIP---------- 150 (515)
Q Consensus 86 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~---------- 150 (515)
+|++|++++|.+++ ..|..|.++++|++|++++|++++..+..+..+++| +++++++|.+++..+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 99999999999986 358889999999999999999987777777777777 777877776654433
Q ss_pred -----------------------------------------------------------------------hhccCCCCc
Q 043235 151 -----------------------------------------------------------------------HWIGNFSVL 159 (515)
Q Consensus 151 -----------------------------------------------------------------------~~~~~l~~L 159 (515)
..+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 333445667
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
++|++++|.+. .+|..+..+ +|+.|++++|.+..++ .++.|++|++++|.+.+..+. ..+++|++|++++|+++
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred cEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence 77777777776 456666666 7788888888776655 567788888888887766544 67899999999999998
Q ss_pred CcC--chhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC-ccccCCcccccccCCCCCcccccCC
Q 043235 238 GRI--PHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP-SCLGNVPFWREATDDDSSEFFYANN 314 (515)
Q Consensus 238 ~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~ 314 (515)
+.. +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..+ ..+..++.|+.+....+......
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 437 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-- 437 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC--
T ss_pred ccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc--
Confidence 654 77889999999999999999865444 8999999999999999987766 46777777766443322110000
Q ss_pred CCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCc-cccccchhccccCCeeccC
Q 043235 315 VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS-GEIPWKIGQLQNIRALNLS 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls 393 (515)
......+++|++|++++|.++ +.+|..+..+++|++|+++
T Consensus 438 ---------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 438 ---------------------------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp ---------------------------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ---------------------------------------hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 001134789999999999998 5788899999999999999
Q ss_pred CccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCc
Q 043235 394 NNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKE 453 (515)
Q Consensus 394 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 453 (515)
+|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|...
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 999998889999999999999999999998888889999999999999999999998743
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-43 Score=376.10 Aligned_cols=447 Identities=19% Similarity=0.133 Sum_probs=309.1
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
|.++|..-.+++++|||++|+|+ .+|...+..+++|++|+|++|.|+++.+.+|.++++|++|+|++|+++ .+|...|
T Consensus 43 l~~vP~~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f 120 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAF 120 (635)
T ss_dssp CSSCCSSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGG
T ss_pred cCccCCCCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHh
Confidence 45677666678999999999998 666554445899999999999999888888999999999999999998 7888888
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc-
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL- 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L- 159 (515)
.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 9999999999999999887777899999999999999998753 56778889999999999999987767666544332
Q ss_pred ---cEEEccCccccccccccc------------------------cCCCCCc----------------------------
Q 043235 160 ---SVLLMSENYLQGNIPVQL------------------------NNLKSLE---------------------------- 184 (515)
Q Consensus 160 ---~~L~l~~n~l~~~~~~~l------------------------~~l~~L~---------------------------- 184 (515)
..++++.|.+....+..+ ..+..++
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 345666665543222211 1111111
Q ss_pred -----------------------------EEeCCCCCCC---CcCCCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 185 -----------------------------FIDLSENSLI---SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 185 -----------------------------~L~L~~n~l~---~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
.+++.++.+. .+.....++.|++.+|.+....+. .+..|+.+++.
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~ 357 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFT 357 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEE
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---cchhhhhcccc
Confidence 1111111111 111233466677777666554332 34567777777
Q ss_pred CCccCCcCchhhhcCCCcCEEEccCccCCC--CCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCccc
Q 043235 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQG--RIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~ 310 (515)
+|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+++++..|.+.. .+..+..++.++...........
T Consensus 358 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 358 SNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp SCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEES
T ss_pred cccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccc
Confidence 7766432 233456777777777776642 234455566677777777776643 33344445544443322111110
Q ss_pred ccCCCCCCccccCCcccccCccccccccccccceeeeccCccc---cccccccccCCEEEcCCCcCc-cccccchhcccc
Q 043235 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE---FFIGSNLNYMAGLDLSGNEFS-GEIPWKIGQLQN 386 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 386 (515)
..... .+.............+... ......++.++.|+|++|.+. +..|..|..+++
T Consensus 435 ~~~~~-------------------~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 435 MSEFS-------------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp TTSSC-------------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccc-------------------ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 00000 0000000111111111111 011234789999999999754 457888999999
Q ss_pred CCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCC-ccc-CCCCccccc
Q 043235 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK-EQF-ATFDDCSYK 464 (515)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~-~~l~~~~~~ 464 (515)
|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|.. ..+ .+++.+.+.
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 999999999999999999999999999999999999888999999999999999999999998873 334 689999999
Q ss_pred CCCCCCCCccC
Q 043235 465 GNSALCGSMIK 475 (515)
Q Consensus 465 gn~~~c~~~l~ 475 (515)
||||.|+|.+.
T Consensus 576 ~Np~~C~C~~~ 586 (635)
T 4g8a_A 576 QNDFACTCEHQ 586 (635)
T ss_dssp TCCBCCSGGGH
T ss_pred CCCCcccCCcH
Confidence 99999999754
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-44 Score=385.76 Aligned_cols=372 Identities=17% Similarity=0.216 Sum_probs=308.6
Q ss_pred CchhHHhcccCCcEEECcCCcccc-----------------cCCcccc--CCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 27 LPENLGIIFQKLIYLDMSKNNFEG-----------------NIPYSVG--EMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 27 ~p~~~~~~~~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
+|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..+ .++++|
T Consensus 440 IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPEL 517 (876)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSC
T ss_pred hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCC
Confidence 7887776 7999999999999997 3888887 99999999999999888899665 789999
Q ss_pred CEEEccCcc-ccc-cCCccccCCC-------CCCEEEcccCCCCCcCCh--hhhCCCCCcEEEcccCcCCCCcChhccCC
Q 043235 88 DWLDLSNNN-FYG-QLFPNYMNLT-------DLGSLYLDNNHFSGKMTD--GLLSSTLLRVLNVSNNMLSGDIPHWIGNF 156 (515)
Q Consensus 88 ~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 156 (515)
++|++++|+ +++ .+|..+++++ +|++|++++|+++ .+|. .+..+++|++|++++|.++ .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 887 6777666554 9999999999999 7787 8999999999999999999 778 89999
Q ss_pred CCccEEEccCccccccccccccCCCC-CcEEeCCCCCCCCcCC----C--CcccEEEcccCceeeeccccc---c--CCC
Q 043235 157 SVLSVLLMSENYLQGNIPVQLNNLKS-LEFIDLSENSLISLSN----L--SFVKHIYLQNNAIKGLIPIAL---L--RSS 224 (515)
Q Consensus 157 ~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~l~~----l--~~L~~L~L~~n~i~~~~~~~~---~--~~~ 224 (515)
++|+.|++++|.+. .+|..+..+++ |+.|++++|++..++. . +.|+.|++++|.+.+.+|... . .++
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999999 78888999999 9999999999976652 2 349999999999988655322 2 345
Q ss_pred CccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccC-C-------CCCCEEECCCCcCcCCCCccccCCc
Q 043235 225 TLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-L-------RKLSIMDLSRNRLNGPIPSCLGNVP 296 (515)
Q Consensus 225 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l-------~~L~~L~L~~n~i~~~~p~~~~~l~ 296 (515)
+|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|..+.. . ++|++|+|++|+++ .+|..+..
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-- 749 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-- 749 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh--
Confidence 8999999999998544444558999999999999999 45544333 2 39999999999997 55554320
Q ss_pred ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc
Q 043235 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE 376 (515)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 376 (515)
..+++|+.|+|++|++++
T Consensus 750 -------------------------------------------------------------~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 750 -------------------------------------------------------------TTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp -------------------------------------------------------------TTCTTCCEEECCSSCCSS-
T ss_pred -------------------------------------------------------------ccCCCcCEEEeCCCCCCc-
Confidence 127889999999999996
Q ss_pred cccchhccccCCeeccCC------ccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 377 IPWKIGQLQNIRALNLSN------NLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 377 ~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++...-+
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 788899999999999976 788889999999999999999999999 57888766 699999999999987655
Q ss_pred CC-cccCCCCcccccCCCCCC--CCc
Q 043235 451 DK-EQFATFDDCSYKGNSALC--GSM 473 (515)
Q Consensus 451 ~~-~~~~~l~~~~~~gn~~~c--~~~ 473 (515)
.. ..........+.+|+..+ +|+
T Consensus 845 ~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred HHccccccchheeecCCCccccCCCC
Confidence 42 122233444556665544 654
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-43 Score=384.41 Aligned_cols=450 Identities=19% Similarity=0.154 Sum_probs=349.8
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+..|.++++++ .+|. + +++|++|+|++|.|++..+.+|.++++|++|+|++|...+.++...|.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~-~vP~-l---p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ-V---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS-S---CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC-C---CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 57899999999 8897 3 68999999999999988899999999999999999966658877777999999999999
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChh--hhCCCCCcEEEcccCcCCCCcC-hhccCCCCccEEEccCcccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDG--LLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 170 (515)
+|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99999988999999999999999999999766654 8999999999999999987655 57999999999999999999
Q ss_pred ccccccccCC--CCCcEEeCCCCCCCCcC-----CCC------cccEEEcccCceeeecccccc----------------
Q 043235 171 GNIPVQLNNL--KSLEFIDLSENSLISLS-----NLS------FVKHIYLQNNAIKGLIPIALL---------------- 221 (515)
Q Consensus 171 ~~~~~~l~~l--~~L~~L~L~~n~l~~l~-----~l~------~L~~L~L~~n~i~~~~~~~~~---------------- 221 (515)
+..+..+..+ ++|+.|++++|.+.... .++ .|+.|++++|.+++..+..+.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 8888888877 89999999999885422 222 399999999977654433222
Q ss_pred --------------------C--CCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEEC
Q 043235 222 --------------------R--SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDL 279 (515)
Q Consensus 222 --------------------~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 279 (515)
+ .++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 1 268999999999999888999999999999999999999888999999999999999
Q ss_pred CCCcCcCCCCccccCCcccccccCCCCCcccccCC-------CCCCccccCCcccccCc-----ccccccccccc-----
Q 043235 280 SRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN-------VDSPVAYYNSSLELQLP-----VELHFRQDQQV----- 342 (515)
Q Consensus 280 ~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----- 342 (515)
++|.+++..|..+..++.|+.+....+........ ........+........ ..+..+....+
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccc
Confidence 99999988899999999988876554322111110 00000000000000000 00001111100
Q ss_pred --ceeeeccCccccc----cccccccCCEEEcCCCcCcccccc-chhccccCCeeccCCcccc-----ccChhhhcCccC
Q 043235 343 --GAKFVTKNRYEFF----IGSNLNYMAGLDLSGNEFSGEIPW-KIGQLQNIRALNLSNNLLS-----GAIPESFSNLKM 410 (515)
Q Consensus 343 --~~~~~~~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~ 410 (515)
.......+..... ....+++|++|+|++|++++..+. .+..+++|++|+|++|.++ +..+..|.++++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 0001111111111 112578899999999999855433 3566889999999999987 344567889999
Q ss_pred CCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCC
Q 043235 411 IESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 411 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~ 469 (515)
|++|+|++|++++..|..|..+++|+.|+|++|++++..|.... .+++.+++.+|...
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLL 539 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCC
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCC
Confidence 99999999999999999999999999999999999987665433 78888888887654
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5e-43 Score=365.26 Aligned_cols=409 Identities=18% Similarity=0.196 Sum_probs=274.0
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+...+++|+++|+++ .+|..+ +++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCE
Confidence 444577888888877 677655 367788888888887666677788888888888888777 554455577778888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc--cEEEccC
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL--SVLLMSE 166 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~ 166 (515)
|++++|+++. +|.. .+++|++|++++|++++. .|..|..+++|++|++++|.++.. .+..+++| ++|++++
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 8888887774 3333 677788888888877753 346777778888888888777643 33444444 7777777
Q ss_pred ccc--cccccccccC--------------------------CCCCcEEeCCCCCC---------CCcCC-----------
Q 043235 167 NYL--QGNIPVQLNN--------------------------LKSLEFIDLSENSL---------ISLSN----------- 198 (515)
Q Consensus 167 n~l--~~~~~~~l~~--------------------------l~~L~~L~L~~n~l---------~~l~~----------- 198 (515)
|.+ .+..|..+.. +++|+.+++++|+. ..+..
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 777 5555544443 44566666666531 00111
Q ss_pred ----------------CCcccEEEcccCceeeeccccc-----cCCCCccEEeccCCccCCcCc-hhhhc---CCCcCEE
Q 043235 199 ----------------LSFVKHIYLQNNAIKGLIPIAL-----LRSSTLLTLDLRDNKLFGRIP-HQINE---RSNLHVL 253 (515)
Q Consensus 199 ----------------l~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~Ls~n~i~~~~~-~~~~~---l~~L~~L 253 (515)
.++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+| .++.. ..+|+.|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 1256666666666665555444 4444444444444444 122 12211 2457777
Q ss_pred EccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccc
Q 043235 254 LLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVE 333 (515)
Q Consensus 254 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (515)
++++|.+.... ....+++|++|++++|++++..|..+..++.|+.+....+......
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 393 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------------- 393 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT---------------------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc---------------------
Confidence 77777765322 1256778888888888888777777777776665433211100000
Q ss_pred cccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc-chhccccCCeeccCCccccccChhhhcCccCCC
Q 043235 334 LHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW-KIGQLQNIRALNLSNNLLSGAIPESFSNLKMIE 412 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 412 (515)
........+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|+
T Consensus 394 ------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~ 453 (562)
T 3a79_B 394 ------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK 453 (562)
T ss_dssp ------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred ------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence 0000113478999999999999974554 588899999999999999877666554 7999
Q ss_pred eeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCccC
Q 043235 413 SLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 413 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
+|+|++|+++ .+|..+..+++|++|++++|++++..+. ...+..++.+.+.|||+.|+|++.
T Consensus 454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9999999999 6777777999999999999999954444 567888999999999999998653
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-42 Score=348.69 Aligned_cols=366 Identities=20% Similarity=0.244 Sum_probs=313.0
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccc-cCCccccCCCCCCEEEc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L 116 (515)
-+.++.+++.++ .+|. + .++|++|+|++|.++ .++...+.++++|++|++++|.+.+ ..+..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 457888899888 5665 3 378999999999999 5555556899999999999999874 44667999999999999
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChh--ccCCCCccEEEccCcccccccccc-ccCCCCCcEEeCCCCCC
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW--IGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSENSL 193 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l 193 (515)
++|++++..|..|..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755544 899999999999999999887766 88999999999999998
Q ss_pred CCcC-----C--CCcccEEEcccCceeeecccc--------ccCCCCccEEeccCCccCCcCchhhhcC---CCcCEEEc
Q 043235 194 ISLS-----N--LSFVKHIYLQNNAIKGLIPIA--------LLRSSTLLTLDLRDNKLFGRIPHQINER---SNLHVLLL 255 (515)
Q Consensus 194 ~~l~-----~--l~~L~~L~L~~n~i~~~~~~~--------~~~~~~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L 255 (515)
..+. . ...++.|++++|.+.+..+.. +..+++|++|++++|++++..+..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 6553 2 267899999999998875543 3356889999999999998888777654 89999999
Q ss_pred cCccCCCCC----------Ccccc--CCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccC
Q 043235 256 RGNYLQGRI----------PNQLC--QLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYN 323 (515)
Q Consensus 256 ~~n~i~~~~----------~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (515)
++|.+.+.. +..+. ..++|++|++++|.+.+..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------------------- 297 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence 998665321 12222 2368999999999998766665543
Q ss_pred CcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChh
Q 043235 324 SSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPE 403 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 403 (515)
+++|++|+|++|++.+..+..|..+++|++|+|++|++++..+.
T Consensus 298 ------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 298 ------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp ------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred ------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 67899999999999988898999999999999999999988899
Q ss_pred hhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCc
Q 043235 404 SFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 404 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
.|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+. ...+.+++.+.+.+|++.|.|+
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999988899999999999999999999986665 4678899999999999999987
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-42 Score=357.48 Aligned_cols=371 Identities=20% Similarity=0.228 Sum_probs=278.0
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|.+++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|..
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 118 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-- 118 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--
T ss_pred CccCCCCCCCCcCEEECCCCCccccChhhhcc-CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--
Confidence 45677666789999999999999444455554 899999999999999888999999999999999999999 88875
Q ss_pred hCCCCCCEEEccCccccccC-CccccCCCCCCEEEcccCCCCCcCChhhhCCCCC--cEEEcccCcC--CCCcChhccCC
Q 043235 82 SSCLSLDWLDLSNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL--RVLNVSNNML--SGDIPHWIGNF 156 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l 156 (515)
.+++|++|++++|++++.. |..|+++++|++|++++|+++.. .+..+++| ++|++++|.+ ++..|..+..+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccccccc
Confidence 7999999999999998743 57899999999999999999864 34445555 9999999998 66666655543
Q ss_pred C--------------------------CccEEE-----------------------------------------------
Q 043235 157 S--------------------------VLSVLL----------------------------------------------- 163 (515)
Q Consensus 157 ~--------------------------~L~~L~----------------------------------------------- 163 (515)
. +|+.++
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 2 334444
Q ss_pred --------ccCccccccccccc-----cCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeeeccccccC
Q 043235 164 --------MSENYLQGNIPVQL-----NNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGLIPIALLR 222 (515)
Q Consensus 164 --------l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~~~~~~~~ 222 (515)
+++|.+.+.+|..+ ..++.|+.++++.+.+ .++ ....|++|++++|.+.... ....
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~ 351 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPS 351 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSS
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccC
Confidence 44444443344333 3333333333333333 111 1134677777777665432 1256
Q ss_pred CCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCC--CccccCCCCCCEEECCCCcCcCCCCccccCCccccc
Q 043235 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRI--PNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300 (515)
Q Consensus 223 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~ 300 (515)
+++|++|++++|++++..|..+..+++|+.|++++|++++.. |..+..+++|++|++++|++++.+|....
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------- 424 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC------- 424 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-------
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-------
Confidence 677888888888887777777777888888888888777532 35577778888888888877754443210
Q ss_pred ccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccc
Q 043235 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK 380 (515)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 380 (515)
..+++|++|++++|++++..|..
T Consensus 425 ---------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 425 ---------------------------------------------------------AWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp ---------------------------------------------------------CCCTTCCEEECCSSCCCGGGGSS
T ss_pred ---------------------------------------------------------cCcccCCEEECCCCCCCcchhhh
Confidence 22678999999999998777665
Q ss_pred hhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCcc-ccCCCCCCEEecccCcccccCCC
Q 043235 381 IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQ-LTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 381 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
+. ++|++|+|++|+++ .+|..+..+++|++|+|++|+++. +|.. +..+++|+.|++++|++.+..|.
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 54 79999999999999 677767799999999999999994 5554 99999999999999999987764
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-42 Score=358.45 Aligned_cols=392 Identities=19% Similarity=0.186 Sum_probs=298.9
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcc-cCchHHHhCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTG-KLPRPIVSSC 84 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~l~~~~~~~l 84 (515)
.+..+++|++|++++|++++..|..+.. +++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|. .+..+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhcc
Confidence 3578899999999999998555555655 7899999999999998777779999999999999999983 1233 45789
Q ss_pred CCCCEEEccCcc-ccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChh-ccCCCCccEE
Q 043235 85 LSLDWLDLSNNN-FYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW-IGNFSVLSVL 162 (515)
Q Consensus 85 ~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 162 (515)
++|++|++++|. +....+..+.++++|++|++++|++++..|..+..+++|++|++++|.+.. .|.+ +..+++|++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEE
Confidence 999999999998 444444678999999999999999998888888888888888887777763 3333 3456777777
Q ss_pred EccCccccccc--c-----------------------------ccccCCCCCcEEeCCCCCC------------------
Q 043235 163 LMSENYLQGNI--P-----------------------------VQLNNLKSLEFIDLSENSL------------------ 193 (515)
Q Consensus 163 ~l~~n~l~~~~--~-----------------------------~~l~~l~~L~~L~L~~n~l------------------ 193 (515)
++++|++.+.. + ..+..+++|+.+++++|.+
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 77777766431 1 1112223333444333332
Q ss_pred ------------CCcC----------CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCch---hhhcCC
Q 043235 194 ------------ISLS----------NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH---QINERS 248 (515)
Q Consensus 194 ------------~~l~----------~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~~l~ 248 (515)
+... ....|++|++++|.++.+....+..+++|++|++++|++++..|. .+..++
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 2110 125688999999999865444446799999999999999876643 367889
Q ss_pred CcCEEEccCccCCCCCC--ccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcc
Q 043235 249 NLHVLLLRGNYLQGRIP--NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSL 326 (515)
Q Consensus 249 ~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (515)
+|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..++.|+.+....+.
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~------------------- 421 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG------------------- 421 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC-------------------
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC-------------------
Confidence 99999999999986532 45889999999999999998 677777777666654332211
Q ss_pred cccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhc
Q 043235 327 ELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS 406 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 406 (515)
...+.+...++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ..
T Consensus 422 -------------------------l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 422 -------------------------IRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp -------------------------CSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred -------------------------cccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence 11111122468999999999998643 57899999999999998 5665 46
Q ss_pred CccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 407 NLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 407 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
.+++|++|+|++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 799999999999999998888999999999999999999998874
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-42 Score=354.28 Aligned_cols=417 Identities=18% Similarity=0.180 Sum_probs=282.8
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
++||+++|+++ .+|..++ ++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecC
Confidence 68999999999 8998764 79999999999999887889999999999999999999 5655556899999999999
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCC-cCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc--cEEEccCccc-
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSG-KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL--SVLLMSENYL- 169 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l- 169 (515)
+|+++. +|.. .+++|++|++++|++++ ..|..+..+++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 999985 4444 89999999999999987 467899999999999999999985 457777788 9999999999
Q ss_pred -cccccccccCCC-CCcEEeCCCCCCCC------cCCCCcccEEEcccCc-------eeeeccccccCCCCccEEeccCC
Q 043235 170 -QGNIPVQLNNLK-SLEFIDLSENSLIS------LSNLSFVKHIYLQNNA-------IKGLIPIALLRSSTLLTLDLRDN 234 (515)
Q Consensus 170 -~~~~~~~l~~l~-~L~~L~L~~n~l~~------l~~l~~L~~L~L~~n~-------i~~~~~~~~~~~~~L~~L~Ls~n 234 (515)
.+..|..+..+. +...+++++|.+.. +..++.|+.+++++|. +.+.++ .+..+++|+.|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 667777766654 23345666666532 2245666777776665 444443 5556666666666666
Q ss_pred ccCCcCchhhh---cCCCcCEEEccCccCCCCCCccc-----cCCCCCCEEECCCCcCcCCCC-ccccCC---ccccccc
Q 043235 235 KLFGRIPHQIN---ERSNLHVLLLRGNYLQGRIPNQL-----CQLRKLSIMDLSRNRLNGPIP-SCLGNV---PFWREAT 302 (515)
Q Consensus 235 ~i~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~p-~~~~~l---~~l~~~~ 302 (515)
.+.+..+..+. ..++|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ..++.+.
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 55432221111 13456666666666665555555 5555555666655555 233 111111 1111111
Q ss_pred CCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCcc--cc
Q 043235 303 DDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSG--EI 377 (515)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~--~~ 377 (515)
...+..... .+. .....+..-....+.... .....+++|++|++++|++++ .+
T Consensus 309 l~~n~l~~~-------~~~---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 309 VSGTRMVHM-------LCP---------------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp EESSCCCCC-------CCC---------------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred cCCCccccc-------cch---------------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 110000000 000 000000000000010000 011347788889999988886 45
Q ss_pred ccchhccccCCeeccCCccccccChh-hhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-Cccc
Q 043235 378 PWKIGQLQNIRALNLSNNLLSGAIPE-SFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQF 455 (515)
Q Consensus 378 ~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~ 455 (515)
|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|. ...+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 56788888899999999988874554 477888899999999988877776654 68899999999988 5555 5578
Q ss_pred CCCCcccccCCCCC
Q 043235 456 ATFDDCSYKGNSAL 469 (515)
Q Consensus 456 ~~l~~~~~~gn~~~ 469 (515)
..++.+.+.+|...
T Consensus 444 ~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 444 EALQELNVASNQLK 457 (520)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCC
Confidence 88888888888654
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-39 Score=329.79 Aligned_cols=345 Identities=24% Similarity=0.322 Sum_probs=279.8
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
..+++++.|+++++.+. .+|. +.. +++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~-l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hHhccccEEecCCCCCc-cCcc-hhh-hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCC
Confidence 34678899999999887 6775 443 7899999999999885443 888999999999999988 5665 6789999
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
++|++++|.+++.. .+.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.... .+..+++|++|++++|
T Consensus 115 ~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999887643 388899999999999988753 347888999999986 4555332 3888899999999999
Q ss_pred cccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 244 (515)
.+.+. ..+..+++|++|++++|.+..+. .+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred cCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 88754 34788899999999999886553 678899999999988875 357788899999999998876544 7
Q ss_pred hcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCC
Q 043235 245 NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNS 324 (515)
Q Consensus 245 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (515)
..+++|+.|++++|++++..+ +..+++|++|++++|++.+..+ +
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~-------------------------------- 305 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I-------------------------------- 305 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G--------------------------------
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h--------------------------------
Confidence 888899999999998885433 7788899999999998864322 1
Q ss_pred cccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhh
Q 043235 325 SLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 404 (515)
..+++|++|++++|++++..| +..+++|++|++++|++++. ..
T Consensus 306 ---------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 306 ---------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ---------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ---------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 237789999999999987655 78899999999999999865 46
Q ss_pred hcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccccc
Q 043235 405 FSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP 448 (515)
Q Consensus 405 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 448 (515)
+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8899999999999999997766 88999999999999999874
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-40 Score=335.82 Aligned_cols=317 Identities=21% Similarity=0.201 Sum_probs=233.3
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
-+.++.+++.++ .+|..+. +++++|+|++|.++ .++...|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 357888888887 5666553 57888999999888 5655556888889999999888888778888888889999998
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
+|+++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++..+.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88888766677888888889999888888777788888888888888888888777778888888888888888776543
Q ss_pred -----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC
Q 043235 198 -----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272 (515)
Q Consensus 198 -----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 272 (515)
.+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 566777777777777777666777777777777777766655555555555777777777777754445666777
Q ss_pred CCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcc
Q 043235 273 KLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRY 352 (515)
Q Consensus 273 ~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
+|++|++++|++++..+..+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------------------------- 270 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHE---------------------------------------------------------- 270 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTT----------------------------------------------------------
T ss_pred ccCeeECCCCcCCccChhhccc----------------------------------------------------------
Confidence 7777777777765433333221
Q ss_pred ccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccc
Q 043235 353 EFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG 423 (515)
Q Consensus 353 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 423 (515)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++.+
T Consensus 271 -------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 271 -------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp -------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred -------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 4556667777777766666666666777777777777666666666666677777777776653
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-38 Score=323.78 Aligned_cols=355 Identities=25% Similarity=0.312 Sum_probs=301.7
Q ss_pred cCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCcccc
Q 043235 19 SSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFY 98 (515)
Q Consensus 19 s~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~ 98 (515)
..+.+.+.++..- ++++++|+++++.+.. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.++
T Consensus 32 ~~~~~~~~i~~~~---l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~ 103 (466)
T 1o6v_A 32 GKTNVTDTVSQTD---LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIA 103 (466)
T ss_dssp TCSSTTSEECHHH---HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred cccccccccChhH---hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccc
Confidence 3344444444322 5789999999999984 55 4889999999999999998 6776 689999999999999998
Q ss_pred ccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccccccccc
Q 043235 99 GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178 (515)
Q Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 178 (515)
+..+ +.++++|++|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+.
T Consensus 104 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~ 174 (466)
T 1o6v_A 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLA 174 (466)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGT
T ss_pred cChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhc
Confidence 6544 9999999999999999986533 89999999999999999853 3 48999999999997 4555332 388
Q ss_pred CCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEc
Q 043235 179 NLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLL 255 (515)
Q Consensus 179 ~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 255 (515)
.+++|+.|++++|.+..+. .+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|+.|++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred cCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 9999999999999986654 77899999999999998765 77789999999999999754 46889999999999
Q ss_pred cCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccc
Q 043235 256 RGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELH 335 (515)
Q Consensus 256 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
++|.+++..+ +..+++|++|++++|.+++..+ +
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~------------------------------------------- 283 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--L------------------------------------------- 283 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G-------------------------------------------
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCcccc--c-------------------------------------------
Confidence 9999986544 8899999999999999875322 1
Q ss_pred cccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeee
Q 043235 336 FRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 415 (515)
..+++|++|++++|++.+..+ +..+++|++|++++|++++..| +..+++|++|+
T Consensus 284 ----------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 284 ----------------------AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp ----------------------TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred ----------------------cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 226789999999999996544 8899999999999999997766 78999999999
Q ss_pred CCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCC
Q 043235 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALC 470 (515)
Q Consensus 416 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c 470 (515)
+++|++++. ..+..+++|+.|++++|++++..| ...+..++.+.+.+|++..
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999999965 578999999999999999999888 6778889999999998766
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-38 Score=336.87 Aligned_cols=402 Identities=17% Similarity=0.141 Sum_probs=301.0
Q ss_pred CCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhC
Q 043235 4 RLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSS 83 (515)
Q Consensus 4 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~ 83 (515)
.-.+..+++|++|||++|+|+ .+|+..+..+++|++|+|++|++++..+.+|.++++|++|+|++|+++ .++...|++
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~ 146 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH 146 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTT
T ss_pred HHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhc
Confidence 345788999999999999999 666665555899999999999999877788999999999999999999 788877899
Q ss_pred CCCCCEEEccCcccccc-CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC----cEEEcccCcCCCCcChhcc----
Q 043235 84 CLSLDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL----RVLNVSNNMLSGDIPHWIG---- 154 (515)
Q Consensus 84 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~---- 154 (515)
+++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+.++ ..++++.|.++...+..+.
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 99999999999999754 46778999999999999999987777766544332 3455555554422111111
Q ss_pred --------------------C---------------------------------------------------------CC
Q 043235 155 --------------------N---------------------------------------------------------FS 157 (515)
Q Consensus 155 --------------------~---------------------------------------------------------l~ 157 (515)
. +.
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 1 11
Q ss_pred CccEEEccCccccccccccccCCCCCcEEeCCCCCCC---------------------C---cCCCCcccEEEcccCcee
Q 043235 158 VLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI---------------------S---LSNLSFVKHIYLQNNAIK 213 (515)
Q Consensus 158 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---------------------~---l~~l~~L~~L~L~~n~i~ 213 (515)
+++.+.+.++.+... ..+.....++.|++.+|.+. . ...++.|+.+++++|.+.
T Consensus 307 ~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 307 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp TCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred ccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccc
Confidence 222222222222211 12333445556655555432 1 124677899999999875
Q ss_pred e--eccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCC-ccccCCCCCCEEECCCCcCcCCCCc
Q 043235 214 G--LIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIP-NQLCQLRKLSIMDLSRNRLNGPIPS 290 (515)
Q Consensus 214 ~--~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~p~ 290 (515)
. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+.
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 4 345566778899999999998864 45567788999999998887665443 5677889999999999999888787
Q ss_pred cccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCC
Q 043235 291 CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSG 370 (515)
Q Consensus 291 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (515)
.+..++.++.+....+..... ...-....+++|++|+|++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~----------------------------------------~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQEN----------------------------------------FLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGG----------------------------------------EECSCCTTCTTCCEEECTT
T ss_pred ccccchhhhhhhhhhcccccc----------------------------------------cCchhhhhccccCEEECCC
Confidence 777766665533221110000 0000113478999999999
Q ss_pred CcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCC-CCCCEEecccCcccccC
Q 043235 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTEL-NFLSNFNVSYNNLSGPI 449 (515)
Q Consensus 371 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~ 449 (515)
|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|||++|+|++..|..+..+ ++|++|+|++|+++...
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999998 68999999999998765
Q ss_pred C
Q 043235 450 P 450 (515)
Q Consensus 450 p 450 (515)
.
T Consensus 584 ~ 584 (635)
T 4g8a_A 584 E 584 (635)
T ss_dssp G
T ss_pred C
Confidence 4
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-38 Score=317.55 Aligned_cols=332 Identities=20% Similarity=0.202 Sum_probs=186.2
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
+++++|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 44455555555444 44444444445555555555554444444444555555555555555444444444455555555
Q ss_pred cccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeecc
Q 043235 140 VSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIP 217 (515)
Q Consensus 140 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~ 217 (515)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++..+. .++.|++|++++|.+++.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~-- 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-- 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE--
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc--
Confidence 5555554333333444555555555555554444444445555555555555544332 444555555555554432
Q ss_pred ccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcc
Q 043235 218 IALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF 297 (515)
Q Consensus 218 ~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~ 297 (515)
...++|++|++++|.+... +.. ..++|+.|++++|++++. ..+..+++|++|++++|.+.+..|..+..
T Consensus 202 ---~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--- 270 (390)
T 3o6n_A 202 ---AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK--- 270 (390)
T ss_dssp ---ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT---
T ss_pred ---CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc---
Confidence 1223555555555555432 211 234566666666666532 35556666666666666665443433322
Q ss_pred cccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccc
Q 043235 298 WREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEI 377 (515)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 377 (515)
+++|++|+|++|++++ +
T Consensus 271 --------------------------------------------------------------l~~L~~L~L~~n~l~~-~ 287 (390)
T 3o6n_A 271 --------------------------------------------------------------MQRLERLYISNNRLVA-L 287 (390)
T ss_dssp --------------------------------------------------------------CSSCCEEECCSSCCCE-E
T ss_pred --------------------------------------------------------------cccCCEEECCCCcCcc-c
Confidence 4556666666666663 4
Q ss_pred ccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCC
Q 043235 378 PWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFAT 457 (515)
Q Consensus 378 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 457 (515)
+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++.+... ...+..
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~ 362 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRN 362 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTT
T ss_pred CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHH
Confidence 445566778888888888887 5566677788888888888888744 3 6777888889999998876422 234566
Q ss_pred CCcccccCCCCCCCCc
Q 043235 458 FDDCSYKGNSALCGSM 473 (515)
Q Consensus 458 l~~~~~~gn~~~c~~~ 473 (515)
+....+.+++..|.++
T Consensus 363 ~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 363 VARPAVDDADQHCKID 378 (390)
T ss_dssp CCTTTBCCCCSCCCTT
T ss_pred HHhhcccccCceeccc
Confidence 6666778888888653
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=325.85 Aligned_cols=348 Identities=18% Similarity=0.161 Sum_probs=278.8
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.++.++++++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.++ .++...|.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 357888888887 788765 468888999988888777888888888999999988888 554455678888999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
++|+++...+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 88888876666788888899999998888877788888888899999988888877777888888899999988888876
Q ss_pred ccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l 247 (515)
.+..+..+++|+.|++++|.+.. +..+++|++|++++|...+.++.......+|++|++++|++++..+..+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 66778888889999998888854 3467888999999888766666666666789999999999986666788899
Q ss_pred CCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCccc
Q 043235 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (515)
++|+.|+|++|++++..+..|..+++|++|++++|++++..|..+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------- 294 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG--------------------------------- 294 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT---------------------------------
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC---------------------------------
Confidence 99999999999999888888999999999999999998766655433
Q ss_pred ccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcC
Q 043235 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSN 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 407 (515)
+++|++|+|++|++++..+..|..+++|++|+|++|.+...-+ ...-
T Consensus 295 --------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~ 341 (477)
T 2id5_A 295 --------------------------------LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWV 341 (477)
T ss_dssp --------------------------------CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHH
T ss_pred --------------------------------cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhH
Confidence 6788889999999997777778889999999999999874322 1112
Q ss_pred ccCCCeeeCCCCcccccCCccccC
Q 043235 408 LKMIESLDLSRNKLSGQIPPQLTE 431 (515)
Q Consensus 408 l~~L~~L~Ls~N~l~~~~~~~l~~ 431 (515)
......+.+.++......|..+.+
T Consensus 342 ~~~~~~~~~~~~~~~C~~p~~~~g 365 (477)
T 2id5_A 342 FRRRWRLNFNRQQPTCATPEFVQG 365 (477)
T ss_dssp HTTTTSSCCTTCCCBEEESGGGTT
T ss_pred HhhhhccccCccCceeCCchHHcC
Confidence 233445666777666666665554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-38 Score=320.82 Aligned_cols=346 Identities=15% Similarity=0.125 Sum_probs=262.8
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+++|++|++++|.++ .+| .+.. +++|++|++++|.+++. | ++.+++|++|++++|.++ .++ +..+++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~-~~~-~l~~-l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSIT-DMT-GIEK-LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSCCC-CCT-TGGG-CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCTT
T ss_pred hhHcCCCCEEEccCCCcc-cCh-hhcc-cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCCc
Confidence 345788999999999988 456 4554 78899999999998864 3 888899999999999988 565 577889
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++. + ++.+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999988763 2 78888999999999998864 2678888999999998554444 477888899999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 244 (515)
|++++ +| +..+++|+.|++++|++..+. .++.|++|++++|+++++ | +..+++|++|++++|++++..+..+
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 98886 34 778888999999999886554 778888999999988884 4 7788889999999998887654443
Q ss_pred hcCC-------CcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCC
Q 043235 245 NERS-------NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDS 317 (515)
Q Consensus 245 ~~l~-------~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 317 (515)
..++ +|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|.....+..+
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L------------------- 312 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------------------- 312 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-------------------
T ss_pred CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-------------------
Confidence 3332 33444444444443333 3566778888888887665555322221111
Q ss_pred CccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccc
Q 043235 318 PVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLL 397 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 397 (515)
....+++|++|++++|++++. + +..+++|+.|++++|++
T Consensus 313 --------------------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 313 --------------------------------------DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp --------------------------------------CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred --------------------------------------chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCC
Confidence 012367899999999999974 3 88899999999999999
Q ss_pred cccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 398 SGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|.
T Consensus 352 ~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 352 QD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 85 35677889999999875 3556788899999999999997
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-37 Score=326.99 Aligned_cols=332 Identities=20% Similarity=0.210 Sum_probs=210.0
Q ss_pred CCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEE
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVL 138 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 138 (515)
+.+++.|++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345555666655555 5555555555566666666665555555555556666666666666555555555555666666
Q ss_pred EcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeec
Q 043235 139 NVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLI 216 (515)
Q Consensus 139 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~ 216 (515)
++++|.++...+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+..+. .++.|+.|++++|.+++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE-
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc-
Confidence 66666655444444555566666666666665555555555666666666666554433 455566666666655543
Q ss_pred cccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCc
Q 043235 217 PIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296 (515)
Q Consensus 217 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~ 296 (515)
....+|+.|++++|.+....+. + .++|+.|+|++|.+++ +..+..+++|++|++++|.+.+..|..+..
T Consensus 208 ----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 276 (597)
T 3oja_B 208 ----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-- 276 (597)
T ss_dssp ----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT--
T ss_pred ----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC--
Confidence 2234566666666666533221 1 2466777777777664 255666777777777777776555544432
Q ss_pred ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc
Q 043235 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE 376 (515)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 376 (515)
+++|++|+|++|.+++
T Consensus 277 ---------------------------------------------------------------l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 277 ---------------------------------------------------------------MQRLERLYISNNRLVA- 292 (597)
T ss_dssp ---------------------------------------------------------------CSSCCEEECTTSCCCE-
T ss_pred ---------------------------------------------------------------ccCCCEEECCCCCCCC-
Confidence 4566777777777774
Q ss_pred cccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccC
Q 043235 377 IPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA 456 (515)
Q Consensus 377 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 456 (515)
+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++. + +..+++|+.|++++|++.+..+ ...+.
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~ 367 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFR 367 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTT
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-HHHHH
Confidence 4555667788888888888888 5677788888888888888888754 2 6677889999999999887632 23456
Q ss_pred CCCcccccCCCCCCCC
Q 043235 457 TFDDCSYKGNSALCGS 472 (515)
Q Consensus 457 ~l~~~~~~gn~~~c~~ 472 (515)
.+....+.+++..|+.
T Consensus 368 ~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 368 NVARPAVDDADQHCKI 383 (597)
T ss_dssp TCCTTTBCCCCCCCCT
T ss_pred HHhhhccccccccCCc
Confidence 6667778889988876
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7e-38 Score=316.02 Aligned_cols=389 Identities=25% Similarity=0.300 Sum_probs=228.0
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCC-------------CEEECcCCcCccc
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKEL-------------TILDLSRNNFTGK 75 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~ 75 (515)
+.+.|++|++++|.+ +.+|+.++. +++|++|++++|.+.+..|..++++++| ++|++++|.++ .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 467899999999999 599999877 7999999999999998999999988764 99999999988 6
Q ss_pred CchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccC
Q 043235 76 LPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGN 155 (515)
Q Consensus 76 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 155 (515)
+|. ..++|++|++++|.+++ +|.. +++|++|++++|++++. +.. .++|++|++++|.+++ +| .++.
T Consensus 86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 765 24789999999999886 4433 37888888888888743 221 2678888888888885 56 4888
Q ss_pred CCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCc---CCCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 156 FSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 156 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l---~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
+++|++|++++|++++ +|.. ..+|++|++++|++..+ ..+++|++|++++|.++++ |.. .++|++|+++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAG 223 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECC
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECc
Confidence 8888888888888885 4443 35888888888887554 3677788888888888764 322 2478888888
Q ss_pred CCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCccccc
Q 043235 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYA 312 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 312 (515)
+|++. .+| .+..+++|++|++++|++++ +|.. +++|++|++++|++++ +|..+. .++.+....+......
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~~---~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELPQ---SLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCCT---TCCEEECCSSCCSEES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcccC---cCCEEECcCCccCccc
Confidence 88887 455 47788888888888888874 4432 3778888888888875 444332 2332222211100000
Q ss_pred CCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeecc
Q 043235 313 NNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNL 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 392 (515)
. .+ ..+..-....+....+. ...++|++|++++|++++ +|.. +++|++|++
T Consensus 294 ~----------------~~--------~~L~~L~l~~N~l~~i~-~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 294 E----------------LP--------PNLYYLNASSNEIRSLC-DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIA 344 (454)
T ss_dssp C----------------CC--------TTCCEEECCSSCCSEEC-CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred C----------------cC--------CcCCEEECcCCcCCccc-CCcCcCCEEECCCCcccc-cccc---CCcCCEEEC
Confidence 0 00 00000111111111111 113578888888888885 5543 578888888
Q ss_pred CCccccccChhhhcCccCCCeeeCCCCcccc--cCCccccCC-------------CCCCEEecccCcccc--cCCCCccc
Q 043235 393 SNNLLSGAIPESFSNLKMIESLDLSRNKLSG--QIPPQLTEL-------------NFLSNFNVSYNNLSG--PIPDKEQF 455 (515)
Q Consensus 393 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l-------------~~L~~L~Ls~N~l~~--~~p~~~~~ 455 (515)
++|+++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 345 ~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP----- 415 (454)
T 1jl5_A 345 SFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP----- 415 (454)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred CCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----
Confidence 888888 4554 46888888888888887 677777777 778888888888887 555
Q ss_pred CCCCcccccCCCCCC
Q 043235 456 ATFDDCSYKGNSALC 470 (515)
Q Consensus 456 ~~l~~~~~~gn~~~c 470 (515)
.++..+.+.+|...|
T Consensus 416 ~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 ESVEDLRMNSERVVD 430 (454)
T ss_dssp ---------------
T ss_pred hhHhheeCcCcccCC
Confidence 334555555554433
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.8e-37 Score=303.54 Aligned_cols=311 Identities=19% Similarity=0.161 Sum_probs=253.3
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
++++++|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 567888888888887555555677888888888888887 5665556778888888888888877777777888888888
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++++|+++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 8888888755555567788888888888888877777788888888888888888754 2556788889999999888
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
.+...+.|++|++++|.+...... ..++|++|++++|++++. ..+..+++|++|++++|++++..|..+..+++|
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 888888899999999999876432 347899999999999754 578999999999999999998889999999999
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
++|++++|++++. |..+
T Consensus 275 ~~L~L~~n~l~~~-~~~~-------------------------------------------------------------- 291 (390)
T 3o6n_A 275 ERLYISNNRLVAL-NLYG-------------------------------------------------------------- 291 (390)
T ss_dssp CEEECCSSCCCEE-ECSS--------------------------------------------------------------
T ss_pred CEEECCCCcCccc-Cccc--------------------------------------------------------------
Confidence 9999999998642 2111
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccccc
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 424 (515)
..+++|++|++++|++. .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++.+.
T Consensus 292 ---~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 292 ---QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ---SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ---CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 12678999999999999 6677789999999999999999854 3 77889999999999999864
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-36 Score=304.16 Aligned_cols=343 Identities=20% Similarity=0.187 Sum_probs=254.8
Q ss_pred CCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc
Q 043235 26 KLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY 105 (515)
Q Consensus 26 ~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 105 (515)
..+..+.. +++|++|++++|.+++. | .+..+++|++|++++|.++ .+| +..+++|++|++++|.+++. .+
T Consensus 33 ~~~~~~~~-l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~ 102 (457)
T 3bz5_A 33 TDTISEEQ-LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DV 102 (457)
T ss_dssp TSEEEHHH-HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CC
T ss_pred ccccChhH-cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ec
Confidence 44445555 78999999999999864 5 6889999999999999998 565 57889999999999999864 28
Q ss_pred cCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcE
Q 043235 106 MNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185 (515)
Q Consensus 106 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 185 (515)
+++++|++|++++|++++. + +..+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 8899999999999999864 3 78889999999999999864 3 788899999999999655444 4778889999
Q ss_pred EeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCC
Q 043235 186 IDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGR 263 (515)
Q Consensus 186 L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 263 (515)
|++++|++..++ .++.|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++.
T Consensus 175 L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 175 LDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp EECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred EECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 999999887654 677888889988888876 37788888889998888886 44 77888888888888888865
Q ss_pred CCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccc
Q 043235 264 IPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVG 343 (515)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
. +..+++|+.|++++|.+....... ...
T Consensus 249 ~---~~~l~~L~~L~l~~n~L~~L~l~~---n~~---------------------------------------------- 276 (457)
T 3bz5_A 249 D---VSTLSKLTTLHCIQTDLLEIDLTH---NTQ---------------------------------------------- 276 (457)
T ss_dssp C---CTTCTTCCEEECTTCCCSCCCCTT---CTT----------------------------------------------
T ss_pred C---HHHCCCCCEEeccCCCCCEEECCC---Ccc----------------------------------------------
Confidence 3 355677888887777664211000 000
Q ss_pred eeeeccCccccccccccccCCEEEcCCCcCccccccc--------hhccccCCeeccCCccccccChhhhcCccCCCeee
Q 043235 344 AKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK--------IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 415 (515)
...++...+++|+.|++++|...+.+|.. +.++++|++|++++|++++. + +..+++|+.|+
T Consensus 277 --------~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 277 --------LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp --------CCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred --------CCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 00001123677888888888766555532 45567788888888888864 2 77788888888
Q ss_pred CCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCC
Q 043235 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNS 467 (515)
Q Consensus 416 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~ 467 (515)
+++|++++ ++.|..|++++|.++|. ..+..+..+.+..|.
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNS 385 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTB
T ss_pred CCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCc
Confidence 88888874 24566667888888776 234455555555554
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.6e-36 Score=291.70 Aligned_cols=304 Identities=22% Similarity=0.335 Sum_probs=199.3
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+++|++|++++|.+.. .+ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. +.+.++++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4566666666666663 33 3666666666666666666 4554 45666666666666666542 346666666666
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~----- 185 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN----- 185 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT-----
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc-----
Confidence 666666653322 556666666666666444222 235556666666666665553322 4444555555544
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
+|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|
T Consensus 186 --------------~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 186 --------------YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp --------------TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred --------------CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 444444322 5667778888888887765433 6777888888888888874433 7778888
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
++|++++|.+++. ..+
T Consensus 246 ~~L~l~~n~l~~~--~~~-------------------------------------------------------------- 261 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAV-------------------------------------------------------------- 261 (347)
T ss_dssp CEEECCSSCCCCC--GGG--------------------------------------------------------------
T ss_pred CEEECCCCccCCC--hhH--------------------------------------------------------------
Confidence 8888888877532 111
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCC
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 434 (515)
..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++
T Consensus 262 ---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 334 (347)
T 4fmz_A 262 ---KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334 (347)
T ss_dssp ---TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred ---hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence 1266788888888888753 357788888888888888888888888888888888888888886555 788888
Q ss_pred CCEEecccCccc
Q 043235 435 LSNFNVSYNNLS 446 (515)
Q Consensus 435 L~~L~Ls~N~l~ 446 (515)
|++|++++|+++
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 888888888875
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-35 Score=289.84 Aligned_cols=306 Identities=24% Similarity=0.338 Sum_probs=246.2
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
..+++|++|+++++.+. .++. +.. +++|++|++++|.+++. +. +.++++|++|++++|.++ .++. +..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCcC
Confidence 46889999999999998 6775 444 89999999999999954 43 999999999999999998 6764 6899999
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
++|++++|.+++..+ +..+++|++|++++|..... +..+..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999986433 88999999999999976644 4458999999999999999986544 889999999999999
Q ss_pred cccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcC
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l 247 (515)
.+.+..+ +..+++|+.+++++|.+.. ..+ +..+++|++|++++|++++..+ +..+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~-------------------~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l 242 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITD-------------------ITP--VANMTRLNSLKIGNNKITDLSP--LANL 242 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCC-------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred ccccccc--ccCCCccceeecccCCCCC-------------------Cch--hhcCCcCCEEEccCCccCCCcc--hhcC
Confidence 9985433 6677777777777665543 222 5566778888888888765433 7778
Q ss_pred CCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCccc
Q 043235 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (515)
++|++|++++|.+++. ..+..+++|++|++++|.+++. + .+
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~----------------------------------- 283 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VL----------------------------------- 283 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GG-----------------------------------
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hh-----------------------------------
Confidence 8888888888888753 4677888899999988887642 1 11
Q ss_pred ccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcC
Q 043235 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSN 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 407 (515)
..+++|++|++++|.+++..+..+..+++|++|++++|++++..| +..
T Consensus 284 ------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 284 ------------------------------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp ------------------------------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred ------------------------------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 236788899999999988888889999999999999999986666 888
Q ss_pred ccCCCeeeCCCCccc
Q 043235 408 LKMIESLDLSRNKLS 422 (515)
Q Consensus 408 l~~L~~L~Ls~N~l~ 422 (515)
+++|++|++++|.|+
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999886
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-35 Score=311.20 Aligned_cols=311 Identities=19% Similarity=0.157 Sum_probs=258.4
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+.+++.+++++|.+....+..|.++++|++|+|++|.++ .++...|..+++|++|++++|.+++..+..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567888888888888666666788888888888888887 5555556788888888888888887777778888888888
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888888666666788888888888888888777778888888888888888888542 456788899999999988
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
.+...+.|+.|++++|.+....+.. .++|+.|++++|.+++ +.++..+++|+.|+|++|.+++..|..|..+++|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 8888888999999999988765433 3689999999999976 4778999999999999999999889999999999
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
++|+|++|.+++. |..+
T Consensus 281 ~~L~Ls~N~l~~l-~~~~-------------------------------------------------------------- 297 (597)
T 3oja_B 281 ERLYISNNRLVAL-NLYG-------------------------------------------------------------- 297 (597)
T ss_dssp CEEECTTSCCCEE-ECSS--------------------------------------------------------------
T ss_pred CEEECCCCCCCCC-Cccc--------------------------------------------------------------
Confidence 9999999998742 2211
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccccc
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 424 (515)
..+++|+.|+|++|.++ .+|..+..+++|++|+|++|++++.. +..+++|+.|+|++|++.+.
T Consensus 298 ---~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 298 ---QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ---SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred ---ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 12678999999999999 67888899999999999999998553 67789999999999999864
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.3e-36 Score=288.78 Aligned_cols=259 Identities=35% Similarity=0.575 Sum_probs=210.3
Q ss_pred CCCcEEEcccCcCCC--CcChhccCCCCccEEEccC-ccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEccc
Q 043235 133 TLLRVLNVSNNMLSG--DIPHWIGNFSVLSVLLMSE-NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQN 209 (515)
Q Consensus 133 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~ 209 (515)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++ |++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~-------------------L~Ls~ 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY-------------------LYITH 110 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE-------------------EEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCE-------------------EECcC
Confidence 456666777766665 5666666677777777763 6666666666555554444 44444
Q ss_pred CceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC-CCCEEECCCCcCcCCC
Q 043235 210 NAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR-KLSIMDLSRNRLNGPI 288 (515)
Q Consensus 210 n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~ 288 (515)
|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++..
T Consensus 111 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 555666677777788888888888888877888888888888888888888878888888887 8899999999887766
Q ss_pred CccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEc
Q 043235 289 PSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDL 368 (515)
Q Consensus 289 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 368 (515)
|..+.. +. |++|++
T Consensus 191 ~~~~~~-----------------------------------------------------------------l~-L~~L~L 204 (313)
T 1ogq_A 191 PPTFAN-----------------------------------------------------------------LN-LAFVDL 204 (313)
T ss_dssp CGGGGG-----------------------------------------------------------------CC-CSEEEC
T ss_pred ChHHhC-----------------------------------------------------------------Cc-ccEEEC
Confidence 665432 33 888999
Q ss_pred CCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccccc
Q 043235 369 SGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP 448 (515)
Q Consensus 369 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 448 (515)
++|.+++..|..+..+++|++|+|++|++++..|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99999988888999999999999999999866665 88899999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCcccccCCCCCCCCccCCCC
Q 043235 449 IPDKEQFATFDDCSYKGNSALCGSMIKRKC 478 (515)
Q Consensus 449 ~p~~~~~~~l~~~~~~gn~~~c~~~l~~~~ 478 (515)
+|....+.+++.+.+.||+++||.|+. .|
T Consensus 284 ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 284 IPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999988999999999999999998886 46
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5e-34 Score=287.84 Aligned_cols=343 Identities=27% Similarity=0.331 Sum_probs=217.3
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
++++|++++|.++ .+|. .+++|++|++++|.+++ +|.. +++|++|++++|+++ .++. ..++|++|+
T Consensus 72 ~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~ 137 (454)
T 1jl5_A 72 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG 137 (454)
T ss_dssp TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred CCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEE
Confidence 3588888888887 5665 14688888888888885 5543 478888888888887 5553 126888888
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|.+++ +| .++++++|++|++++|++++ +|.. ..+|++|++++|.+++ +| .++.+++|++|++++|++++
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 88888875 44 58888888888888888875 4443 3578888888888885 45 57888888888888888875
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 248 (515)
+|.. .++|++|++++|.+..++ .+++|++|++++|+++++ |. ..++|++|++++|++++ +|.. .+
T Consensus 210 -l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 210 -LPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred -CCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cC
Confidence 3432 257888888888875543 677788888888888764 32 23678888888888875 3432 36
Q ss_pred CcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccc
Q 043235 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLEL 328 (515)
Q Consensus 249 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (515)
+|+.|++++|++++. +. ..++|++|++++|++++ ++.... .++.+...
T Consensus 278 ~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~~~~---~L~~L~Ls------------------------ 325 (454)
T 1jl5_A 278 SLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCDLPP---SLEELNVS------------------------ 325 (454)
T ss_dssp TCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECCCCT---TCCEEECC------------------------
T ss_pred cCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccCCcC---cCCEEECC------------------------
Confidence 788888888888752 21 12678888888888764 111111 12211111
Q ss_pred cCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccc--cChhhhc
Q 043235 329 QLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG--AIPESFS 406 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~ 406 (515)
.+....+. ..+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.
T Consensus 326 --------------------~N~l~~lp-~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 326 --------------------NNKLIELP-ALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp --------------------SSCCSCCC-CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred --------------------CCcccccc-ccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 00000000 12578999999999999 5665 47899999999999998 6788888
Q ss_pred Cc-------------cCCCeeeCCCCcccc--cCCccccCCCCCCEEecccCcccccCCC
Q 043235 407 NL-------------KMIESLDLSRNKLSG--QIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 407 ~l-------------~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
.+ ++|++|++++|++++ .+|. +++.|.+++|.+.+.+|.
T Consensus 381 ~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 381 DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp EEECCC------------------------------------------------------
T ss_pred hhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 88 889999999999996 4553 466778899998887664
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.4e-38 Score=319.09 Aligned_cols=377 Identities=19% Similarity=0.151 Sum_probs=252.9
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccc----cCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEG----NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
+++|++||+++|++++.....++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45789999999999854445545558999999999999884 34677888999999999999998545556666676
Q ss_pred ----CCCEEEccCccccc----cCCccccCCCCCCEEEcccCCCCCcCChhhh-----CCCCCcEEEcccCcCCCCc---
Q 043235 86 ----SLDWLDLSNNNFYG----QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL-----SSTLLRVLNVSNNMLSGDI--- 149 (515)
Q Consensus 86 ----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~--- 149 (515)
+|++|++++|.++. ..+..+..+++|++|++++|.+....+..+. ..++|++|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999984 4477888999999999999998754444333 2567999999999988643
Q ss_pred -ChhccCCCCccEEEccCcccccccccccc-----CCCCCcEEeCCCCCCCCc-----C----CCCcccEEEcccCceee
Q 043235 150 -PHWIGNFSVLSVLLMSENYLQGNIPVQLN-----NLKSLEFIDLSENSLISL-----S----NLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 150 -~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~l-----~----~l~~L~~L~L~~n~i~~ 214 (515)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+... . .++.|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 55667788999999999998765444443 356888888888887652 1 45677777777777665
Q ss_pred ec-----cccccCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccCccCCCCCCccccC-----CCCCCEEECC
Q 043235 215 LI-----PIALLRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-----LRKLSIMDLS 280 (515)
Q Consensus 215 ~~-----~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~ 280 (515)
.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 22223466777777777777643 4555666777777777777765433333322 2567777777
Q ss_pred CCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccccccccc
Q 043235 281 RNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360 (515)
Q Consensus 281 ~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (515)
+|.+++.....+.. ....+
T Consensus 322 ~n~l~~~~~~~l~~-------------------------------------------------------------~l~~~ 340 (461)
T 1z7x_W 322 SCSFTAACCSHFSS-------------------------------------------------------------VLAQN 340 (461)
T ss_dssp TSCCBGGGHHHHHH-------------------------------------------------------------HHHHC
T ss_pred CCCCchHHHHHHHH-------------------------------------------------------------HHhhC
Confidence 77665321110000 00124
Q ss_pred ccCCEEEcCCCcCccccccchhc-----cccCCeeccCCccccc----cChhhhcCccCCCeeeCCCCcccccCCccc--
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQ-----LQNIRALNLSNNLLSG----AIPESFSNLKMIESLDLSRNKLSGQIPPQL-- 429 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-- 429 (515)
++|++|++++|.+++..+..+.. .++|++|+|++|++++ .++..+..+++|++|++++|++++.....+
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 56777777777776554444432 4567777777777764 456666667777777777777664311111
Q ss_pred ---cCCCCCCEEecccCcccc
Q 043235 430 ---TELNFLSNFNVSYNNLSG 447 (515)
Q Consensus 430 ---~~l~~L~~L~Ls~N~l~~ 447 (515)
.....|+.|++.++.+..
T Consensus 421 ~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 421 SVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHTSTTCCCCEEECTTCCCCH
T ss_pred HhccCCcchhheeecccccCH
Confidence 112345666655555443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.4e-34 Score=278.33 Aligned_cols=247 Identities=23% Similarity=0.278 Sum_probs=173.0
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
++++++++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|++++..+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777776 4555442 57777777777776 555444567777777777777777666677777777777777
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc--cccccccCCCCCcEEeCCCCCCC
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG--NIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++|+++. +|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|++.
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 7777763 343332 677778888777776666667777788888888877753 455666666 7777777777776
Q ss_pred CcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC
Q 043235 195 SLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272 (515)
Q Consensus 195 ~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 272 (515)
.++ ..+.|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 654 2356777777777777776677777777777777777777666667777777777777777777 5666677777
Q ss_pred CCCEEECCCCcCcCCCCccc
Q 043235 273 KLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 273 ~L~~L~L~~n~i~~~~p~~~ 292 (515)
+|++|++++|++++..+..+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSS
T ss_pred cCCEEECCCCCCCccChhHc
Confidence 77777777777765444443
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.2e-33 Score=272.52 Aligned_cols=248 Identities=19% Similarity=0.250 Sum_probs=159.6
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
++++++++++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555555554 3343332 35555555555555 444433455555555555555555544555555555555555
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc--cccccccCCCCCcEEeCCCCCCC
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG--NIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++|+++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 5555552 232222 456666666666665555556666666666666666642 44555666667777777777665
Q ss_pred CcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC
Q 043235 195 SLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272 (515)
Q Consensus 195 ~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 272 (515)
.++ ..+.|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 263 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC
Confidence 554 2356778888888888877788888888888888888888777777888888888888888888 6677788888
Q ss_pred CCCEEECCCCcCcCCCCccc
Q 043235 273 KLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 273 ~L~~L~L~~n~i~~~~p~~~ 292 (515)
+|++|++++|++++..+..+
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSS
T ss_pred CcCEEECCCCcCCccChhhc
Confidence 88888888888876554444
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-33 Score=274.68 Aligned_cols=291 Identities=22% Similarity=0.263 Sum_probs=212.9
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
.+++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 36899999999998 888765 46899999999999988788899999999999999999988888999999999999
Q ss_pred cccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeecccc
Q 043235 140 VSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 140 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
+++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+..
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~ 168 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------------GFEPGA 168 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------------GSCTTS
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-----------------CCCccc
Confidence 9999998 4555444 7899999999999877667788888888888888876431 123344
Q ss_pred ccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 220 LLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 220 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
+..+ +|++|++++|++++ +|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 169 ~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~------ 238 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS------ 238 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG------
T ss_pred ccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh------
Confidence 4444 66667777776654 333332 5677777777777766666677777777777777777654443332
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW 379 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 379 (515)
.+++|++|++++|+++ .+|.
T Consensus 239 -----------------------------------------------------------~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 239 -----------------------------------------------------------FLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp -----------------------------------------------------------GCTTCCEEECCSSCCC-BCCT
T ss_pred -----------------------------------------------------------CCCCCCEEECCCCcCe-ecCh
Confidence 2556777777777777 5666
Q ss_pred chhccccCCeeccCCccccccChhhhcC------ccCCCeeeCCCCccc--ccCCccccCCCCCCEEecccCc
Q 043235 380 KIGQLQNIRALNLSNNLLSGAIPESFSN------LKMIESLDLSRNKLS--GQIPPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 380 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~N~ 444 (515)
.+..+++|++|++++|++++..+..|.. ...|+.|++++|++. +..|..|..++.|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6777777777777777777666666654 356777888888776 5566777778888888887764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.2e-33 Score=272.54 Aligned_cols=292 Identities=22% Similarity=0.259 Sum_probs=208.1
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
.++++++++++.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|++++..|..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47899999999998 888654 46899999999999887777899999999999999999988788899999999999
Q ss_pred cccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeecccc
Q 043235 140 VSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 140 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
+++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+..
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~ 166 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-----------------GIENGA 166 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------------GBCTTG
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-----------------CcChhh
Confidence 9999988 4555443 6889999999988877777788888888888888776431 123445
Q ss_pred ccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 220 LLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 220 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
+..+++|++|++++|+++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus 167 ~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------ 237 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA------ 237 (330)
T ss_dssp GGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG------
T ss_pred ccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc------
Confidence 5666666777777766653 333332 5677777777777666666677777777777777766543332221
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW 379 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 379 (515)
.+++|++|+|++|+++ .+|.
T Consensus 238 -----------------------------------------------------------~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 238 -----------------------------------------------------------NTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp -----------------------------------------------------------GSTTCCEEECCSSCCS-SCCT
T ss_pred -----------------------------------------------------------CCCCCCEEECCCCcCc-cCCh
Confidence 1456666777777776 5666
Q ss_pred chhccccCCeeccCCccccccChhhhcC------ccCCCeeeCCCCcccc--cCCccccCCCCCCEEecccCc
Q 043235 380 KIGQLQNIRALNLSNNLLSGAIPESFSN------LKMIESLDLSRNKLSG--QIPPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 380 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~ 444 (515)
.+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6677777777777777777665555543 3567777777777753 455677777777777777774
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4e-36 Score=305.82 Aligned_cols=371 Identities=16% Similarity=0.123 Sum_probs=287.0
Q ss_pred ccCCcEEECcCCcccccCCcc-ccCCCCCCEEECcCCcCccc----CchHHHhCCCCCCEEEccCccccccCCccc-cCC
Q 043235 35 FQKLIYLDMSKNNFEGNIPYS-VGEMKELTILDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQLFPNY-MNL 108 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l 108 (515)
+++|++|++++|.++...... +..+++|++|++++|.+++. ++ ..+..+++|++|++++|.+....+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 468999999999998544433 78899999999999998732 23 335778999999999999976444433 334
Q ss_pred C----CCCEEEcccCCCCC----cCChhhhCCCCCcEEEcccCcCCCCcChhcc-----CCCCccEEEccCccccccc--
Q 043235 109 T----DLGSLYLDNNHFSG----KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG-----NFSVLSVLLMSENYLQGNI-- 173 (515)
Q Consensus 109 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~-- 173 (515)
+ +|++|++++|+++. .++..+..+++|++|++++|.++...+..+. ..++|++|++++|++++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 79999999999984 4477889999999999999998754444332 3568999999999998643
Q ss_pred --cccccCCCCCcEEeCCCCCCCCcC----------CCCcccEEEcccCceeee----ccccccCCCCccEEeccCCccC
Q 043235 174 --PVQLNNLKSLEFIDLSENSLISLS----------NLSFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 174 --~~~l~~l~~L~~L~L~~n~l~~l~----------~l~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
+..+..+++|++|++++|.+.... ..+.|++|++++|.+++. ++..+..+++|++|++++|++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 556677899999999999984321 356899999999999874 4667778899999999999987
Q ss_pred CcCc-----hhhhcCCCcCEEEccCccCCCC----CCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCc
Q 043235 238 GRIP-----HQINERSNLHVLLLRGNYLQGR----IPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE 308 (515)
Q Consensus 238 ~~~~-----~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~ 308 (515)
+... ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+...
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------- 307 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET------------- 307 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH-------------
Confidence 5432 2233588999999999999864 56677789999999999998864322221110
Q ss_pred ccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc----cccchhcc
Q 043235 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE----IPWKIGQL 384 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l 384 (515)
.....++|++|++++|.+++. ++..+..+
T Consensus 308 -----------------------------------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 308 -----------------------------------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp -----------------------------------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred -----------------------------------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 001136899999999999865 45667778
Q ss_pred ccCCeeccCCccccccChhhhcC-----ccCCCeeeCCCCcccc----cCCccccCCCCCCEEecccCccccc-------
Q 043235 385 QNIRALNLSNNLLSGAIPESFSN-----LKMIESLDLSRNKLSG----QIPPQLTELNFLSNFNVSYNNLSGP------- 448 (515)
Q Consensus 385 ~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~------- 448 (515)
++|++|++++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|++|++++|++++.
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 99999999999998766655543 6799999999999996 7788899999999999999999864
Q ss_pred -CCCCcccCCCCcccccCCCC
Q 043235 449 -IPDKEQFATFDDCSYKGNSA 468 (515)
Q Consensus 449 -~p~~~~~~~l~~~~~~gn~~ 468 (515)
+|. ...+++.+.+.++.+
T Consensus 421 ~l~~--~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 421 SVRQ--PGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHTS--TTCCCCEEECTTCCC
T ss_pred Hhcc--CCcchhheeeccccc
Confidence 221 233566666666554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.1e-33 Score=268.85 Aligned_cols=248 Identities=27% Similarity=0.453 Sum_probs=125.6
Q ss_pred CCCEEEcccCCCCC--cCChhhhCCCCCcEEEccc-CcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEE
Q 043235 110 DLGSLYLDNNHFSG--KMTDGLLSSTLLRVLNVSN-NMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186 (515)
Q Consensus 110 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 186 (515)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4444444455555555542 44444444445555555555555555544444444444444433
Q ss_pred eCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCC-CcCEEEccCccCCCCCC
Q 043235 187 DLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS-NLHVLLLRGNYLQGRIP 265 (515)
Q Consensus 187 ~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~ 265 (515)
++++| .+++..|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++..|
T Consensus 131 ~Ls~N-------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 131 DFSYN-------------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp ECCSS-------------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred eCCCC-------------------ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 33333 22223333444444444444444444444444444444 44444444444444444
Q ss_pred ccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCcccccccccccccee
Q 043235 266 NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAK 345 (515)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
..+..++ |++|++++|.+++..|..+..
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------------- 219 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGS--------------------------------------------------- 219 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCT---------------------------------------------------
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhc---------------------------------------------------
Confidence 4444443 555555555444333332221
Q ss_pred eeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccC
Q 043235 346 FVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 425 (515)
+++|++|+|++|.+++.++. +..+++|++|+|++|++++.+|..|..+++|++|+|++|++++.+
T Consensus 220 --------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 220 --------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp --------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred --------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 33445555555555533333 455566666666666666666666666666666666666666666
Q ss_pred CccccCCCCCCEEecccCc
Q 043235 426 PPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 426 ~~~l~~l~~L~~L~Ls~N~ 444 (515)
|.. ..+++|+.+++++|+
T Consensus 285 p~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSS
T ss_pred CCC-ccccccChHHhcCCC
Confidence 654 566666666777666
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=261.06 Aligned_cols=276 Identities=21% Similarity=0.189 Sum_probs=236.5
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.|+.....+++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCC
Confidence 4666778999999998 899876 468999999999999777778999999999999999998 66666668899999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCC-hhhhCCCCCcEEEcccC-cCCCCcChhccCCCCccEEEccC
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMT-DGLLSSTLLRVLNVSNN-MLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
+|++++|++++..+..+.++++|++|++++|+++.... ..+..+++|++|++++| .+....+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999987666668999999999999999986544 47889999999999999 47766678899999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcC-----CCCcccEEEcccCceeeecccccc---CCCCccEEeccCCccCC
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALL---RSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-----~l~~L~~L~L~~n~i~~~~~~~~~---~~~~L~~L~Ls~n~i~~ 238 (515)
|.+.+..|..+..+++|++|++++|++..++ .+++|++|++++|.+++..+..+. ....++.++++++.+.+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 9999888999999999999999999997665 478999999999999886554433 45678999999998875
Q ss_pred ----cCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC
Q 043235 239 ----RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289 (515)
Q Consensus 239 ----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p 289 (515)
.+|.++..+++|+.|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 357788999999999999999995544556899999999999999987654
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.8e-30 Score=246.24 Aligned_cols=180 Identities=22% Similarity=0.236 Sum_probs=75.1
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc--CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEE
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK--MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL 163 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 163 (515)
+|++|++++|+++...+..|.++++|++|++++|+++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 344444444444332222334444444444444444311 1233334444444444444444 2333344444455555
Q ss_pred ccCcccccccc-ccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC-cCc
Q 043235 164 MSENYLQGNIP-VQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG-RIP 241 (515)
Q Consensus 164 l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~ 241 (515)
+++|++.+..+ ..+..+++|++|+++ +|.+.+..+..+..+++|++|++++|.+.+ ..|
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~-------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDIS-------------------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECT-------------------TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred CCCCcccccccchhhhhccCCCEEECC-------------------CCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 55544443222 223333333333333 233333333344444444444444444433 234
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCc
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 44444444444444444444444444444444444444444443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=254.27 Aligned_cols=262 Identities=21% Similarity=0.225 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.++|++|++++|+++ .++...+..+++|++|++++|.+++..+.+|.++++|++|++++|+++ .++...+
T Consensus 43 l~~iP~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 120 (353)
T 2z80_A 43 LNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWF 120 (353)
T ss_dssp CSSCCTTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHH
T ss_pred cccccccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHh
Confidence 45677777789999999999999 566543344899999999999999888889999999999999999999 8998878
Q ss_pred hCCCCCCEEEccCccccccCC-ccccCCCCCCEEEcccC-CCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLF-PNYMNLTDLGSLYLDNN-HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
..+++|++|++++|+++.... ..+.++++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 999999999999999986554 47899999999999999 5776777889999999999999999998889999999999
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeee----ccccccCCCCcc
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGL----IPIALLRSSTLL 227 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~----~~~~~~~~~~L~ 227 (515)
++|++++|.+.......+..+++|+.|++++|.+..+. ....++.++++++.+.+. +|..+..+++|+
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 99999999998555445567899999999999997643 356688899999888763 567788999999
Q ss_pred EEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCC
Q 043235 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIP 265 (515)
Q Consensus 228 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 265 (515)
+|++++|+++...+..|..+++|++|++++|++.+..+
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999985544446899999999999999986543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.5e-29 Score=241.24 Aligned_cols=248 Identities=23% Similarity=0.297 Sum_probs=207.7
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccC---chHHHhCCCCCCEE
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKL---PRPIVSSCLSLDWL 90 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l---~~~~~~~l~~L~~L 90 (515)
+.++++++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.++ .+ +..+ ..+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSD-FGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHH-HSCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCccccc-ccccccCEE
Confidence 68999999998 888865 468999999999999665666899999999999999987 44 4554 568999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCC-hhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMT-DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
++++|.++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 999999974 56678899999999999999986554 5788889999999999999878888888899999999999988
Q ss_pred cc-cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCC
Q 043235 170 QG-NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248 (515)
Q Consensus 170 ~~-~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 248 (515)
.+ ..|..+..+++|++|++++ |.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~-------------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQ-------------------CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTT-------------------SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred ccccchhHHhhCcCCCEEECCC-------------------CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 76 4666666666666555555 455666677888889999999999999887777888999
Q ss_pred CcCEEEccCccCCCCCCccccCCC-CCCEEECCCCcCcCC
Q 043235 249 NLHVLLLRGNYLQGRIPNQLCQLR-KLSIMDLSRNRLNGP 287 (515)
Q Consensus 249 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~ 287 (515)
+|+.|++++|++++..+..+..++ +|++|++++|++++.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999999999999988888888884 999999999999754
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.1e-29 Score=237.93 Aligned_cols=225 Identities=21% Similarity=0.240 Sum_probs=153.3
Q ss_pred cEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 39 IYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 39 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
++++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666666 344433 356667777777666 55555456666677777766666665566666666666666666
Q ss_pred CC-CCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 119 NH-FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 119 n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
|+ +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 155 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------- 155 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence 65 555555666666666666666666665555666666666666666666664444444444444
Q ss_pred CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEE
Q 043235 198 NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277 (515)
Q Consensus 198 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 277 (515)
++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|
T Consensus 156 -----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 156 -----THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp -----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred -----cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 444555555566666677888888888888888888778888888888888888888887666778888888999
Q ss_pred ECCCCcCcC
Q 043235 278 DLSRNRLNG 286 (515)
Q Consensus 278 ~L~~n~i~~ 286 (515)
++++|++..
T Consensus 231 ~l~~N~~~c 239 (285)
T 1ozn_A 231 RLNDNPWVC 239 (285)
T ss_dssp ECCSSCEEC
T ss_pred eccCCCccC
Confidence 998888864
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.9e-29 Score=250.00 Aligned_cols=248 Identities=20% Similarity=0.197 Sum_probs=173.9
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.+.++.+++.++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.++ .++...|.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 456666666666 666654 356677777777776666666666777777777777666 555555566666666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccC-cCCCCcChhccCCCCccEEEccCccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNN-MLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++| .+....+..|.++++|++|++++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 666666555555666666666666666666555555666666666666653 2332222345555555555555555442
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 251 (515)
+| .+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+
T Consensus 200 -~~--------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 200 -IP--------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp -CC--------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred -cc--------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 11 123456677788888888888888999999999999999999988889999999999
Q ss_pred EEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 252 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999998888888999999999999999864
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=9.8e-29 Score=250.23 Aligned_cols=246 Identities=18% Similarity=0.198 Sum_probs=164.0
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.+.++.++..++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.++ .++...|.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 345566666665 555543 245666666666666555556666666666666666665 444444455566666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
++|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++| +.+...
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------------~~l~~i 187 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------KKLEYI 187 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------TTCCEE
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------------CCcccc
Confidence 666655544444555555555555555555444445555555555555552 222222
Q ss_pred ccccccCCCCCcEEeCCCCCCCCc---CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSN 249 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~l---~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 249 (515)
.+..|..+++|+.|++++|++..+ ..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 222344445555555555544333 35567788888888888888999999999999999999999888999999999
Q ss_pred cCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 250 LHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 250 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9999999999998888888999999999999999864
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.4e-31 Score=255.24 Aligned_cols=263 Identities=19% Similarity=0.177 Sum_probs=192.3
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|++.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 344444432333333444556666666666655555556666666666666666654433 566666666666666666
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccc-cCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQL-CQLRK 273 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~ 273 (515)
.+...+.|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++
T Consensus 94 ~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 94 ELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp EEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred cccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 6665677777777778777765443 5679999999999988777788888999999999999987766666 47899
Q ss_pred CCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccc
Q 043235 274 LSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353 (515)
Q Consensus 274 L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
|++|++++|.+++. +..
T Consensus 171 L~~L~L~~N~l~~~-~~~-------------------------------------------------------------- 187 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-KGQ-------------------------------------------------------------- 187 (317)
T ss_dssp CCEEECTTSCCCEE-ECC--------------------------------------------------------------
T ss_pred CCEEECCCCcCccc-ccc--------------------------------------------------------------
Confidence 99999999988632 110
Q ss_pred cccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccc-ccCCccccCC
Q 043235 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS-GQIPPQLTEL 432 (515)
Q Consensus 354 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l 432 (515)
..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..+
T Consensus 188 ----~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 188 ----VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp ----CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ----cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 116789999999999995 4555889999999999999998 56778999999999999999998 7788889999
Q ss_pred CCCCEEeccc-CcccccCCC
Q 043235 433 NFLSNFNVSY-NNLSGPIPD 451 (515)
Q Consensus 433 ~~L~~L~Ls~-N~l~~~~p~ 451 (515)
+.|+.+++++ +.+++..|.
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSC
T ss_pred ccceEEECCCchhccCCchh
Confidence 9999999994 456665554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.6e-29 Score=239.85 Aligned_cols=256 Identities=19% Similarity=0.146 Sum_probs=207.5
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-++++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeC
Confidence 378999999998 888765 579999999999999888888999999999999999998 565555688999999999
Q ss_pred cCcc-ccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 93 SNNN-FYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 93 ~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
++|. ++...+..+..+++|++|++++|++++..+..+..+++|++|++++|.++...+..+..+++|++|++++|++++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 9997 887778889999999999999999998888899999999999999999998777789999999999999999997
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 251 (515)
..+..+..+++|+.|++++| .+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQN-------------------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSS-------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred cCHHHhcCccccCEEECCCC-------------------cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 66666777766666666555 45556677788888899999999998877777788888999
Q ss_pred EEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCcccc
Q 043235 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293 (515)
Q Consensus 252 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 293 (515)
.|++++|++....+.. .....++.+..+.+.+....|..+.
T Consensus 229 ~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 229 YLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred EEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 9999998887432211 0111233334555666555555443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=247.13 Aligned_cols=237 Identities=20% Similarity=0.178 Sum_probs=199.3
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
|..+|..-.++++.|++++|++++..+..+. .+++|++|+|++|.+++..+.+|.++++|++|+|++|+++ .++...|
T Consensus 55 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 132 (440)
T 3zyj_A 55 LREVPDGISTNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAF 132 (440)
T ss_dssp CSSCCSCCCTTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTS
T ss_pred cCcCCCCCCCCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHh
Confidence 4667877789999999999999944445554 4899999999999999888899999999999999999999 8888778
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEccc-CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN-NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
..+++|++|++++|.++...+..|.++++|++|++++ +.+....+..|..+++|++|++++|.++ .+| .+..+++|+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccC
Confidence 9999999999999999988888899999999999999 4565555668999999999999999998 445 488899999
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcC
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRI 240 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 240 (515)
+|++++|++++..+..|..+++|+.|++++|++ +++.+..|..+++|++|+|++|++++..
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-------------------QVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-------------------CEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCce-------------------eEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 999999999988888888887777777766654 4555666777777788888888777666
Q ss_pred chhhhcCCCcCEEEccCccCC
Q 043235 241 PHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 241 ~~~~~~l~~L~~L~L~~n~i~ 261 (515)
+..|..+++|+.|+|++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 667777777888888877765
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3e-31 Score=278.49 Aligned_cols=406 Identities=13% Similarity=0.051 Sum_probs=232.1
Q ss_pred CCCCccEEeCcCCcCC---CCCc-----------hhHHhcccCCcEEECcCCcccccCCccccC-CC-CCCEEECcCCc-
Q 043235 9 KYDKLRHLDISSNNFS---GKLP-----------ENLGIIFQKLIYLDMSKNNFEGNIPYSVGE-MK-ELTILDLSRNN- 71 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~---~~~p-----------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-l~-~L~~L~L~~n~- 71 (515)
.+++|++|+++++... +.+| ..+...+++|++|+|++|.+++..+..+.. ++ +|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 4666777777664321 1222 122223677777777777776555555544 23 37777777775
Q ss_pred CcccCchHHHhCCCCCCEEEccCccccccC----CccccCCCCCCEEEcccCCCCCc----CChhhhCCCCCcEEEcccC
Q 043235 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQL----FPNYMNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNN 143 (515)
Q Consensus 72 l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n 143 (515)
++...-..+...+++|++|++++|.+++.. +..+..+++|++|++++|.+++. .+..+..+++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221111222346777777777777765432 22345567777777777777522 2333456677777777777
Q ss_pred cCCCCcChhccCCCCccEEEccCcccc---ccccccccCCCCCcEEeCCCCCCCCcC----CCCcccEEEcccCceeeec
Q 043235 144 MLSGDIPHWIGNFSVLSVLLMSENYLQ---GNIPVQLNNLKSLEFIDLSENSLISLS----NLSFVKHIYLQNNAIKGLI 216 (515)
Q Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~l~----~l~~L~~L~L~~n~i~~~~ 216 (515)
.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.++++++....++ .+++|++|++++|.+++..
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 7763 5566777777777777653222 122344556667777777665433322 4556777777777655432
Q ss_pred c-ccccCCCCccEEeccCCccCC-cCchhhhcCCCcCEEEccC-----------ccCCCCC-CccccCCCCCCEEECCCC
Q 043235 217 P-IALLRSSTLLTLDLRDNKLFG-RIPHQINERSNLHVLLLRG-----------NYLQGRI-PNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 217 ~-~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~-----------n~i~~~~-~~~~~~l~~L~~L~L~~n 282 (515)
. ..+..+++|++|+++ +.+.+ ..+.....+++|++|++++ |.+++.. ......+++|++|+++.|
T Consensus 310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 2 234566777777776 33322 2233335566777777772 4444321 122334667777777666
Q ss_pred cCcCCCCccccC-CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc
Q 043235 283 RLNGPIPSCLGN-VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361 (515)
Q Consensus 283 ~i~~~~p~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (515)
.+++..+..+.. ++.|+.+...... ..+ ....... . ... ......++
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~---~~n------------------------~l~~~p~---~-~~~-~~~~~~~~ 436 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLD---REE------------------------RITDLPL---D-NGV-RSLLIGCK 436 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECS---CCS------------------------CCSSCCC---H-HHH-HHHHHHCT
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecC---CCc------------------------cccCchH---H-HHH-HHHHHhCC
Confidence 665544333322 3333221110000 000 0000000 0 000 00013378
Q ss_pred cCCEEEcCCCc--Cccccccchh-ccccCCeeccCCcccccc-ChhhhcCccCCCeeeCCCCccccc-CCccccCCCCCC
Q 043235 362 YMAGLDLSGNE--FSGEIPWKIG-QLQNIRALNLSNNLLSGA-IPESFSNLKMIESLDLSRNKLSGQ-IPPQLTELNFLS 436 (515)
Q Consensus 362 ~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~ 436 (515)
+|++|++++|. +++..+..+. .+++|++|++++|++++. .+..+..+++|++|+|++|.+++. ++.....+++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 89999997654 6655555554 378899999999998753 455567889999999999998754 344456789999
Q ss_pred EEecccCccccc
Q 043235 437 NFNVSYNNLSGP 448 (515)
Q Consensus 437 ~L~Ls~N~l~~~ 448 (515)
+|++++|++++.
T Consensus 517 ~L~ls~n~it~~ 528 (592)
T 3ogk_B 517 YLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCBCCTT
T ss_pred eeECcCCcCCHH
Confidence 999999998764
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.9e-28 Score=248.03 Aligned_cols=237 Identities=19% Similarity=0.140 Sum_probs=198.7
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|++++..+..+.. +++|++|+|++|.+++..+.+|.++++|++|+|++|.++ .++...|
T Consensus 66 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 143 (452)
T 3zyi_A 66 LSEVPQGIPSNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAF 143 (452)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTS
T ss_pred cCccCCCCCCCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhh
Confidence 45677777789999999999999555665555 899999999999999888899999999999999999999 8888888
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEccc-CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN-NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
..+++|++|++++|.++...+..|.++++|++|++++ +.+....+..|..+++|++|++++|.+++. | .+..+++|+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 221 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLE 221 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccccc
Confidence 9999999999999999988778899999999999999 556655566788999999999999999854 4 478899999
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcC
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRI 240 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 240 (515)
+|++++|.+.+..|..|..+++|+.|++++|++ ++..+..|..+++|++|+|++|++++..
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-------------------SLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-------------------CEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcC-------------------ceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 999999999988888888887777777766654 4555666777777777777777777666
Q ss_pred chhhhcCCCcCEEEccCccCC
Q 043235 241 PHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 241 ~~~~~~l~~L~~L~L~~n~i~ 261 (515)
+..+..+++|+.|+|++|.+.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 666777777888888777765
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.3e-28 Score=236.17 Aligned_cols=233 Identities=20% Similarity=0.227 Sum_probs=126.9
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+++.|++++|.++ .+|..++. +++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEE
Confidence 44455555555554 44444444 445555555555554 44444555555555555555554 444432 444555555
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+.+..|..+... .....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 555544444444333220 00011223666666666666666 55666666666666666666666
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCc
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 250 (515)
+ +|..+..+++|++|++++|.+ .+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~-------------------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTA-------------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTT-------------------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred c-CchhhccCCCCCEEECcCCcc-------------------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 3 444566666555555555433 23344555566666666666666666666666666666
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCcC
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i 284 (515)
++|+|++|++.+.+|..+..+++|+.+++..+.+
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666666666666666666666666666665544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=2.4e-30 Score=249.35 Aligned_cols=258 Identities=19% Similarity=0.191 Sum_probs=204.3
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+++..+++.+.+. ..+..++..+++|++|++++|.+++..|..|.++++|++|++++|.+++ ++. +..+++|++|
T Consensus 10 ~~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L 85 (317)
T 3o53_A 10 NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTL 85 (317)
T ss_dssp TEEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEE
T ss_pred CceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEE
Confidence 34677788888886 6666676667899999999999998778899999999999999999984 443 6889999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 99999987533 348999999999999865544 3678999999999999877778889999999999999999
Q ss_pred cccccccc-CCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhc
Q 043235 171 GNIPVQLN-NLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246 (515)
Q Consensus 171 ~~~~~~l~-~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 246 (515)
+..+..+. .+++|++|++++|.+..+. .+++|++|++++|+++++.+ .+..+++|++|++++|+++ .+|..+..
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhc
Confidence 87776664 6889999999999886544 46677777777777776544 3667777777777777776 34566677
Q ss_pred CCCcCEEEccCccCC-CCCCccccCCCCCCEEECCCC
Q 043235 247 RSNLHVLLLRGNYLQ-GRIPNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 247 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n 282 (515)
+++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777777777777776 556666677777777777633
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.1e-27 Score=248.86 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=67.6
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEE
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLY 115 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 115 (515)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++. +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35777777777777 5555554 67777777777776 6664 35667777777777653 222 456666666
Q ss_pred cccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 116 LDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 116 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
+++|++++. |. .+++|++|++++|+++. +|.. +++|++|++++|.++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 666666532 22 34555666666665553 2321 244555555555444
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.9e-31 Score=277.66 Aligned_cols=409 Identities=15% Similarity=0.094 Sum_probs=283.9
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCccc---ccCCcccc------------CCCCCCEEECcCCcCcccCchH
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE---GNIPYSVG------------EMKELTILDLSRNNFTGKLPRP 79 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~---~~~~~~~~------------~l~~L~~L~L~~n~l~~~l~~~ 79 (515)
.+.+.++ .. ..|..+...+++|++|+++++... +..|..++ .+++|++|+|++|.+++..+..
T Consensus 54 ~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~ 131 (592)
T 3ogk_B 54 HVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131 (592)
T ss_dssp EEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHH
Confidence 4444433 33 456666666899999999886431 23333333 7899999999999888554544
Q ss_pred HHhCCCC-CCEEEccCcc-cccc-CCccccCCCCCCEEEcccCCCCCcC----ChhhhCCCCCcEEEcccCcCCC----C
Q 043235 80 IVSSCLS-LDWLDLSNNN-FYGQ-LFPNYMNLTDLGSLYLDNNHFSGKM----TDGLLSSTLLRVLNVSNNMLSG----D 148 (515)
Q Consensus 80 ~~~~l~~-L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~----~ 148 (515)
+...+++ |++|++++|. ++.. .+....++++|++|++++|.+++.. +..+..+++|++|++++|.+++ .
T Consensus 132 l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 4333445 9999999987 2211 1122347899999999999987553 3345678999999999999973 3
Q ss_pred cChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCC--------CCcCCCCcccEEEcccCceeeeccccc
Q 043235 149 IPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL--------ISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--------~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++.... ..+..+++|+.++++++... ..+..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH
Confidence 34456778999999999999985 667889999999999985322 34457788999999886433 356677
Q ss_pred cCCCCccEEeccCCccCCcCc-hhhhcCCCcCEEEccCccCCC-CCCccccCCCCCCEEECCC-----------CcCcCC
Q 043235 221 LRSSTLLTLDLRDNKLFGRIP-HQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSIMDLSR-----------NRLNGP 287 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~-----------n~i~~~ 287 (515)
..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+ .++..+..+++|++|++++ |.+++.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 889999999999999765443 346789999999999 44443 3344456789999999994 455432
Q ss_pred CC-ccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEE
Q 043235 288 IP-SCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGL 366 (515)
Q Consensus 288 ~p-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 366 (515)
.. .....++.|+.+... ... +... .....+..+++|+.|
T Consensus 369 ~~~~l~~~~~~L~~L~l~-------------------------------~~~--------l~~~-~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVY-------------------------------VSD--------ITNE-SLESIGTYLKNLCDF 408 (592)
T ss_dssp HHHHHHHHCTTCSEEEEE-------------------------------ESC--------CCHH-HHHHHHHHCCSCCEE
T ss_pred HHHHHHhhCccCeEEEee-------------------------------cCC--------ccHH-HHHHHHhhCCCCcEE
Confidence 11 111223333321100 000 0000 000111237889999
Q ss_pred EcC----CCcCccc-----cccchhccccCCeeccCCcc--ccccChhhhc-CccCCCeeeCCCCcccc-cCCccccCCC
Q 043235 367 DLS----GNEFSGE-----IPWKIGQLQNIRALNLSNNL--LSGAIPESFS-NLKMIESLDLSRNKLSG-QIPPQLTELN 433 (515)
Q Consensus 367 ~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~l~~l~ 433 (515)
+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|+|++|++++ .++..+..++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 996 6778753 33446779999999998654 6655555554 48999999999999986 3455678899
Q ss_pred CCCEEecccCcccccC-CC-CcccCCCCcccccCCCC
Q 043235 434 FLSNFNVSYNNLSGPI-PD-KEQFATFDDCSYKGNSA 468 (515)
Q Consensus 434 ~L~~L~Ls~N~l~~~~-p~-~~~~~~l~~~~~~gn~~ 468 (515)
+|++|++++|++++.. +. ...+.+++.+.+.+|..
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 9999999999987653 33 34678899999999873
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.5e-27 Score=246.14 Aligned_cols=268 Identities=26% Similarity=0.316 Sum_probs=194.5
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+++.|++++|.++ .+|..++ ++|++|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 36899999999999 8998764 79999999999999 4555 5799999999999998 7886 68999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+++. +. .+++|++|++++|+++. +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 9999999864 33 67899999999999985 4443 4889999999999985 443 3567999999999988
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcC-CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCC
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLS-NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSN 249 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 249 (515)
+ +| ..+++|+.|++++|.+..++ .+ ++|+.|++++|.++. +|. .+++
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~l~~~~------------------------~~L~~L~L~~N~l~~-l~~---~~~~ 222 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLASLPTLP------------------------SELYKLWAYNNRLTS-LPA---LPSG 222 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSCCCCCC------------------------TTCCEEECCSSCCSS-CCC---CCTT
T ss_pred C-Cc---ccCCCCcEEECCCCCCCCCCCcc------------------------chhhEEECcCCcccc-cCC---CCCC
Confidence 5 44 34577777777777766543 23 345555555555542 222 1255
Q ss_pred cCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCccccc
Q 043235 250 LHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQ 329 (515)
Q Consensus 250 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (515)
|+.|++++|++++ +| ..+++|++|++++|.++. +|.
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~--------------------------------------- 258 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM--------------------------------------- 258 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---------------------------------------
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---------------------------------------
Confidence 6666666666663 33 334666777777776652 221
Q ss_pred CccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCcc
Q 043235 330 LPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLK 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 409 (515)
.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 259 -----------------------------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 -----------------------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp -----------------------------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred -----------------------------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 0455666777777777 5566677777777777777777766666666554
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.2e-28 Score=233.72 Aligned_cols=220 Identities=19% Similarity=0.244 Sum_probs=161.4
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
+++++|++++|.++ .+|..+ ..+++|++|++++|.++ .+|..+.++++|++|++++|+++ .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 55666666666666 566554 33666666666666665 45556666666666666666666 4566666666666666
Q ss_pred cccCcCCCCcChhcc---------CCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccC
Q 043235 140 VSNNMLSGDIPHWIG---------NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNN 210 (515)
Q Consensus 140 l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n 210 (515)
+++|.+.+.+|..+. .+++|++|++++|.++ .+|..+..+++|++ |++++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~-------------------L~L~~N 216 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS-------------------LKIRNS 216 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE-------------------EEEESS
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE-------------------EEccCC
Confidence 666665555555443 3666666666666666 45555555555555 455555
Q ss_pred ceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCc
Q 043235 211 AIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPS 290 (515)
Q Consensus 211 ~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~ 290 (515)
.++++ |..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.
T Consensus 217 ~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 217 PLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 55553 45688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccccCC
Q 043235 291 CLGNVPFWREATDD 304 (515)
Q Consensus 291 ~~~~l~~l~~~~~~ 304 (515)
.+.+++.++.+...
T Consensus 296 ~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 296 LIAQLPANCIILVP 309 (328)
T ss_dssp GGGGSCTTCEEECC
T ss_pred HHhhccCceEEeCC
Confidence 99999988775443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.2e-29 Score=238.87 Aligned_cols=242 Identities=21% Similarity=0.207 Sum_probs=194.3
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCc-ccCchHHH------hCCCCCCEEEccCccccccCCccc--
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT-GKLPRPIV------SSCLSLDWLDLSNNNFYGQLFPNY-- 105 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~l~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~-- 105 (515)
.++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ..+++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45688888888888 466655544 888888888884 34565442 158889999999998887777765
Q ss_pred cCCCCCCEEEcccCCCCCcCChhhhCC-----CCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc--ccccc-
Q 043235 106 MNLTDLGSLYLDNNHFSGKMTDGLLSS-----TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN--IPVQL- 177 (515)
Q Consensus 106 ~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l- 177 (515)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7888999999999998866 7777766 8899999999999887778888999999999999987654 23334
Q ss_pred -cCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeeecc-ccccCCCCccEEeccCCccCCcCchhhhcC
Q 043235 178 -NNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGLIP-IALLRSSTLLTLDLRDNKLFGRIPHQINER 247 (515)
Q Consensus 178 -~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l 247 (515)
..+++|++|++++|++..+. .+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 78889999999999987432 55889999999999988764 45667899999999999998 6676665
Q ss_pred CCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999966 55 8899999999999999875
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1e-28 Score=251.49 Aligned_cols=234 Identities=21% Similarity=0.176 Sum_probs=175.8
Q ss_pred CCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCcee
Q 043235 134 LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIK 213 (515)
Q Consensus 134 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~ 213 (515)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+..++..+.|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 67777777777776666777777777777777777775544 7777777777777777776666677888888888887
Q ss_pred eeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCcccc-CCCCCCEEECCCCcCcCCCCccc
Q 043235 214 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC-QLRKLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 214 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~ 292 (515)
+..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|++|++++|.+++..+.
T Consensus 113 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-- 187 (487)
T 3oja_A 113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-- 187 (487)
T ss_dssp CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--
T ss_pred CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--
Confidence 76554 346788888888888887777888888888888888888877777765 688888888888887643111
Q ss_pred cCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCc
Q 043235 293 GNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNE 372 (515)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 372 (515)
..+++|++|+|++|.
T Consensus 188 -----------------------------------------------------------------~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 188 -----------------------------------------------------------------VVFAKLKTLDLSSNK 202 (487)
T ss_dssp -----------------------------------------------------------------CCCTTCCEEECCSSC
T ss_pred -----------------------------------------------------------------ccCCCCCEEECCCCC
Confidence 115678888888888
Q ss_pred CccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccc-ccCCccccCCCCCCEEecc
Q 043235 373 FSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS-GQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 373 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls 441 (515)
+++.. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 203 l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 203 LAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88544 447778888888888888874 5666777888888888888887 5566667777777777665
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.2e-29 Score=238.88 Aligned_cols=243 Identities=22% Similarity=0.212 Sum_probs=205.1
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCccc-ccCCcccc-------CCCCCCEEECcCCcCcccCchHH
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE-GNIPYSVG-------EMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
..++|+.|++++|.+ .+|..+.. .|++|++++|.++ ...|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 356789999999999 78988875 3999999999994 45666555 79999999999999997888776
Q ss_pred H-hCCCCCCEEEccCccccccCCccccCC-----CCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCC--cChh
Q 043235 81 V-SSCLSLDWLDLSNNNFYGQLFPNYMNL-----TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGD--IPHW 152 (515)
Q Consensus 81 ~-~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~ 152 (515)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 4 7899999999999999876 7777777 9999999999999988889999999999999999998654 2334
Q ss_pred c--cCCCCccEEEccCccccc---cccccccCCCCCcEEeCCCCCCCCcC------CCCcccEEEcccCceeeecccccc
Q 043235 153 I--GNFSVLSVLLMSENYLQG---NIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQNNAIKGLIPIALL 221 (515)
Q Consensus 153 ~--~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~l~------~l~~L~~L~L~~n~i~~~~~~~~~ 221 (515)
+ ..+++|++|++++|++++ .....+..+++|++|++++|++.... .+++|++|++++|.++.+ |..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc
Confidence 4 889999999999999983 22244568899999999999996532 468899999999999954 55555
Q ss_pred CCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCC
Q 043235 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 222 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7999999999999876 55 8899999999999999985
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.5e-28 Score=244.71 Aligned_cols=242 Identities=21% Similarity=0.214 Sum_probs=177.1
Q ss_pred CCchhHHhc---ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCC
Q 043235 26 KLPENLGII---FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLF 102 (515)
Q Consensus 26 ~~p~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~ 102 (515)
.+|..+... +++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~- 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL- 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-
Confidence 456666543 2389999999999998888899999999999999999985444 688999999999999987543
Q ss_pred ccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccccccccc-CCC
Q 043235 103 PNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN-NLK 181 (515)
Q Consensus 103 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~ 181 (515)
..++|++|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .++
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 238999999999999876554 457899999999999988888899999999999999999988887775 688
Q ss_pred CCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCc
Q 043235 182 SLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGN 258 (515)
Q Consensus 182 ~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 258 (515)
+|+.|++++|.+..+. .++.|++|++++|.++++++ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 8888888888875443 35556666666666665433 25555566666666666553 3444555555666666655
Q ss_pred cCC-CCCCccccCCCCCCEEECC
Q 043235 259 YLQ-GRIPNQLCQLRKLSIMDLS 280 (515)
Q Consensus 259 ~i~-~~~~~~~~~l~~L~~L~L~ 280 (515)
.+. +..|.++..++.|+.++++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 555 3344444555555544443
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.4e-26 Score=218.44 Aligned_cols=166 Identities=25% Similarity=0.262 Sum_probs=126.7
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
..++.++.+++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 10 ~~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECC
Confidence 45777788887 788765 457899999999998777778888999999999999888 6666666788888888888
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCC-cChhccCCCCccEEEccCcccccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGD-IPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
+|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 8888877777788888888888888888766666677778888888888877653 466777777777777777777655
Q ss_pred ccccccCCCCCc
Q 043235 173 IPVQLNNLKSLE 184 (515)
Q Consensus 173 ~~~~l~~l~~L~ 184 (515)
.+..+..+++|+
T Consensus 165 ~~~~~~~l~~L~ 176 (276)
T 2z62_A 165 YCTDLRVLHQMP 176 (276)
T ss_dssp CGGGGHHHHTCT
T ss_pred CHHHhhhhhhcc
Confidence 555554444333
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.3e-29 Score=266.07 Aligned_cols=405 Identities=15% Similarity=0.083 Sum_probs=236.5
Q ss_pred CCCCccEEeCcCCcCCC---CCc-----------hhHHhcccCCcEEECcCCcccccCCcccc-CCCCCCEEECcCC-cC
Q 043235 9 KYDKLRHLDISSNNFSG---KLP-----------ENLGIIFQKLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRN-NF 72 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~---~~p-----------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l 72 (515)
++++|++|+++++.... ..| ..+...+++|++|+|++|.+++..+..+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 46778888888875221 111 12233467888888888888766666664 6788888888888 45
Q ss_pred cccCchHHHhCCCCCCEEEccCccccccCCcccc----CCCCCCEEEcccCC--CCCc-CChhhhCCCCCcEEEcccC-c
Q 043235 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM----NLTDLGSLYLDNNH--FSGK-MTDGLLSSTLLRVLNVSNN-M 144 (515)
Q Consensus 73 ~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--i~~~-~~~~~~~l~~L~~L~l~~n-~ 144 (515)
+......++..+++|++|++++|.+++..+..+. .+++|++|++++|. +... ....+..+++|++|++++| .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 4222334445788888888888887654443333 56688888888886 2211 1112244688888888887 3
Q ss_pred CCCCcChhccCCCCccEEEccCc-------cccccccccccCCCCCcEE-eCCCCCCCCcC----CCCcccEEEcccCce
Q 043235 145 LSGDIPHWIGNFSVLSVLLMSEN-------YLQGNIPVQLNNLKSLEFI-DLSENSLISLS----NLSFVKHIYLQNNAI 212 (515)
Q Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~l~~l~~L~~L-~L~~n~l~~l~----~l~~L~~L~L~~n~i 212 (515)
+. .++..+..+++|++|+++.+ .+.+ ++..+.++++|+.+ .+.+.....+. .+++|++|++++|.+
T Consensus 224 ~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 224 LE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp HH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred HH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 33 36666777888888885544 2332 23355666666666 34333322222 356677777777765
Q ss_pred eeecc-ccccCCCCccEEeccCCccCCcC-chhhhcCCCcCEEEccC---------ccCCCCCCcccc-CCCCCCEEECC
Q 043235 213 KGLIP-IALLRSSTLLTLDLRDNKLFGRI-PHQINERSNLHVLLLRG---------NYLQGRIPNQLC-QLRKLSIMDLS 280 (515)
Q Consensus 213 ~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~-~l~~L~~L~L~ 280 (515)
++... ..+..+++|++|++++| +.... +.....+++|++|++.+ +.+++.....+. .+++|++|+++
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 54322 22446677777777766 33221 22223466777776632 334322222222 36677777666
Q ss_pred CCcCcCCCCcccc-CCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccc
Q 043235 281 RNRLNGPIPSCLG-NVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSN 359 (515)
Q Consensus 281 ~n~i~~~~p~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (515)
.|.+++..+..+. .++.|+.+........ ... ....... .... ......
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~------------------------~l~~~~~----~~~~-~~l~~~ 430 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPK-APD------------------------YLTLEPL----DIGF-GAIVEH 430 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTT-CCC------------------------TTTCCCT----HHHH-HHHHHH
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCC-Ccc------------------------cccCCch----hhHH-HHHHhh
Confidence 6666543322221 1222222111000000 000 0000000 0000 000134
Q ss_pred cccCCEEEcCCCcCccccccchhc-cccCCeeccCCccccccChhhh-cCccCCCeeeCCCCcccccCCc-cccCCCCCC
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQ-LQNIRALNLSNNLLSGAIPESF-SNLKMIESLDLSRNKLSGQIPP-QLTELNFLS 436 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~ 436 (515)
+++|++|+|++ .+++..+..+.. +++|++|+|++|.+++.....+ ..+++|++|+|++|++++.... ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 78899999987 676665555655 8899999999999876655555 6789999999999999754433 445689999
Q ss_pred EEecccCcccc
Q 043235 437 NFNVSYNNLSG 447 (515)
Q Consensus 437 ~L~Ls~N~l~~ 447 (515)
.|++++|+++.
T Consensus 510 ~L~l~~~~~~~ 520 (594)
T 2p1m_B 510 SLWMSSCSVSF 520 (594)
T ss_dssp EEEEESSCCBH
T ss_pred EEeeeCCCCCH
Confidence 99999998853
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=8e-26 Score=213.33 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=41.5
Q ss_pred ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCC
Q 043235 202 VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 202 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
+++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 44444444444444444444455555555555555444444444555555555555555544444455555555555555
Q ss_pred CcCc
Q 043235 282 NRLN 285 (515)
Q Consensus 282 n~i~ 285 (515)
|.+.
T Consensus 110 n~l~ 113 (276)
T 2z62_A 110 TNLA 113 (276)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 5444
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.5e-28 Score=258.13 Aligned_cols=398 Identities=15% Similarity=0.096 Sum_probs=266.2
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCC-ccccc-CCccccCCCCCCEEECcCCcCcccCch---HHHhC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKN-NFEGN-IPYSVGEMKELTILDLSRNNFTGKLPR---PIVSS 83 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~---~~~~~ 83 (515)
.+++|++|++++|.+++..+..+...+++|++|++++| .++.. .+..+.++++|++|++++|.+++..+. .+...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 47899999999999987777777644899999999999 55532 344455899999999999997743322 22246
Q ss_pred CCCCCEEEccCcc--cccc-CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCc-------CCCCcChhc
Q 043235 84 CLSLDWLDLSNNN--FYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNM-------LSGDIPHWI 153 (515)
Q Consensus 84 l~~L~~L~L~~n~--i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~ 153 (515)
+++|++|++++|. +... ....+..+++|++|++++|......+..+..+++|++|+++.+. +. .++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 7899999999996 3211 11223457999999999983322367778889999999976553 33 234467
Q ss_pred cCCCCccEE-EccCccccccccccccCCCCCcEEeCCCCCCCC------cCCCCcccEEEcccCceeee-ccccccCCCC
Q 043235 154 GNFSVLSVL-LMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS------LSNLSFVKHIYLQNNAIKGL-IPIALLRSST 225 (515)
Q Consensus 154 ~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------l~~l~~L~~L~L~~n~i~~~-~~~~~~~~~~ 225 (515)
.++++|+.+ .+.+... ..++..+..+++|+.|++++|.+.. +..+++|++|++++| +.+. .+.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 888889888 4444332 2344545567899999999998743 237788999999988 4432 2223335788
Q ss_pred ccEEeccC---------CccCCcCchhhh-cCCCcCEEEccCccCCCCCCcccc-CCCCCCEEECC--C----CcCcCCC
Q 043235 226 LLTLDLRD---------NKLFGRIPHQIN-ERSNLHVLLLRGNYLQGRIPNQLC-QLRKLSIMDLS--R----NRLNGPI 288 (515)
Q Consensus 226 L~~L~Ls~---------n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~i~~~~ 288 (515)
|++|++++ +.+++.....+. .+++|+.|.++.|.+++.....+. .+++|+.|+++ + +.+++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 99998843 455543333333 478999998888888765555554 57899999998 3 4444221
Q ss_pred Cc-----cccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccC
Q 043235 289 PS-----CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363 (515)
Q Consensus 289 p~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 363 (515)
.. .+..++.|+.+.... . ... ......+..+++|
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~--------------------------------~--------l~~-~~~~~l~~~~~~L 458 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG--------------------------------L--------LTD-KVFEYIGTYAKKM 458 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS--------------------------------S--------CCH-HHHHHHHHHCTTC
T ss_pred hhhHHHHHHhhCCCccEEeecC--------------------------------c--------ccH-HHHHHHHHhchhc
Confidence 11 122233333221100 0 000 0000011237889
Q ss_pred CEEEcCCCcCccccccch-hccccCCeeccCCccccccChh-hhcCccCCCeeeCCCCcccccCCccc-cCCCCCCEEec
Q 043235 364 AGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPE-SFSNLKMIESLDLSRNKLSGQIPPQL-TELNFLSNFNV 440 (515)
Q Consensus 364 ~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L 440 (515)
++|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999987665555 6789999999999999755443 44568999999999999965444444 55778877777
Q ss_pred ccCcccccCC
Q 043235 441 SYNNLSGPIP 450 (515)
Q Consensus 441 s~N~l~~~~p 450 (515)
..+.-....|
T Consensus 539 ~~~~~~~~~~ 548 (594)
T 2p1m_B 539 DERGAPDSRP 548 (594)
T ss_dssp CSSSCGGGSC
T ss_pred cCCCcccccc
Confidence 7665544444
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.5e-25 Score=212.46 Aligned_cols=204 Identities=23% Similarity=0.197 Sum_probs=154.5
Q ss_pred cccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEE
Q 043235 176 QLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVL 253 (515)
Q Consensus 176 ~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 253 (515)
.+..++++++++++++.+..++ -.+.++.|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred cccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 3567788889999988887776 24568888888888888877788888888888888888875433 2677788888
Q ss_pred EccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccc
Q 043235 254 LLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVE 333 (515)
Q Consensus 254 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (515)
++++|+++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------- 122 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------- 122 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT---------------------------------------
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC---------------------------------------
Confidence 88888887 56667777888888888888887554444432
Q ss_pred cccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCe
Q 043235 334 LHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 413 (515)
+++|++|+|++|++++..+..|..+++|++|+|++|+++...+..|..+++|++
T Consensus 123 --------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 123 --------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp --------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred --------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 566777888888887666666777888888888888887666666777888888
Q ss_pred eeCCCCcccccCCccccCCCCCCEEecccCccccc
Q 043235 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP 448 (515)
Q Consensus 414 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 448 (515)
|+|++|+++ .+|..+..+.+|+.+++++|++...
T Consensus 177 L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred EECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 888888887 5666777777788888888877653
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=6.1e-25 Score=206.44 Aligned_cols=204 Identities=25% Similarity=0.263 Sum_probs=155.8
Q ss_pred CCcEEeCCCCCCCCcCC--CCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCcc
Q 043235 182 SLEFIDLSENSLISLSN--LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNY 259 (515)
Q Consensus 182 ~L~~L~L~~n~l~~l~~--l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 259 (515)
..+.++++++.+..++. .+.+++|++++|.++++.+..|..+++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 34566666666655541 2457777777777777767778888888888888888886666667788888888888888
Q ss_pred CCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccc
Q 043235 260 LQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQD 339 (515)
Q Consensus 260 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------- 131 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------------------------------- 131 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT---------------------------------------------
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc---------------------------------------------
Confidence 88777777788888888888888887554444322
Q ss_pred cccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCC
Q 043235 340 QQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRN 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 419 (515)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 132 --------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 132 --------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 567888888888888666666788888888888888888777777888888888888888
Q ss_pred cccccCCccccCCCCCCEEecccCcccccCC
Q 043235 420 KLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 420 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
++++..+..+..+++|+.|++++|++....+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 8886666678888888888888888876654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-24 Score=204.69 Aligned_cols=203 Identities=22% Similarity=0.236 Sum_probs=168.8
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
..+.+++++++++ .+|..+ .+++++|++++|.+++..+.+|.++++|++|++++|.++ .++..+|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 5789999999998 788765 468999999999999777778999999999999999998 88888888899999999
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999987777778889999999999999988877888889999999999999987666678888889999999988887
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~ 238 (515)
..+..|..+++|+.|++++|++ +++.+..+..+++|+.|++++|.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l-------------------~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQL-------------------KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC-------------------SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcC-------------------CcCCHHHhccccCCCEEEecCCCeeC
Confidence 6666676677666666666554 44445567778888888888888753
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.7e-24 Score=203.80 Aligned_cols=198 Identities=24% Similarity=0.219 Sum_probs=111.9
Q ss_pred ccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCcc
Q 043235 153 IGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLL 227 (515)
Q Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 227 (515)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+.. +..++.|++|++++|.++++.+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 445556666666666665 3333332 456666666666633 23455666666666666654332 4556666
Q ss_pred EEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCC
Q 043235 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307 (515)
Q Consensus 228 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~ 307 (515)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------- 146 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------------- 146 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------------
Confidence 6666666665 44555555666666666666666555555666666666666666665433322221
Q ss_pred cccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccC
Q 043235 308 EFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 387 (515)
+++|+.|+|++|++++..+..|..+++|
T Consensus 147 ----------------------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 147 ----------------------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp ----------------------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 4455566666666664444445556666
Q ss_pred CeeccCCccccccChhhhcCccCCCeeeCCCCccc
Q 043235 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 388 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66666666665 44555555556666666666654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3e-25 Score=208.78 Aligned_cols=228 Identities=18% Similarity=0.186 Sum_probs=132.6
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
++..+++..+.+.+. .....+++|+.|++++|.++ .++. +..+++|++|++++|.+++ ...+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEEC
Confidence 344445555544422 23445566666666666655 4443 3456666666666666654 235566666666666
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCc
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL 196 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l 196 (515)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 170 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-- 170 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--
Confidence 666666555555666666666666666666555555666666666666666666555555556666555555555432
Q ss_pred CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCE
Q 043235 197 SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSI 276 (515)
Q Consensus 197 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 276 (515)
+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.
T Consensus 171 -----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~ 226 (272)
T 3rfs_A 171 -----------------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY 226 (272)
T ss_dssp -----------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHH
T ss_pred -----------------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHH
Confidence 2333344555666666666666665555555666666666666665542 3445666
Q ss_pred EECCCCcCcCCCCccccCCcc
Q 043235 277 MDLSRNRLNGPIPSCLGNVPF 297 (515)
Q Consensus 277 L~L~~n~i~~~~p~~~~~l~~ 297 (515)
++++.|.++|.+|..++.++.
T Consensus 227 l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 227 LSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHhCCCcccCcccccCC
Confidence 666666666666666655543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.4e-24 Score=204.20 Aligned_cols=224 Identities=17% Similarity=0.185 Sum_probs=147.3
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+.++..+++..+.+.+... ... +++|++|++++|.++. ...+..+++|++|++++|.++ .++ .+..+++|++
T Consensus 18 ~~~l~~l~l~~~~~~~~~~--~~~-l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~ 89 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT--QNE-LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTY 89 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHH-HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCE
T ss_pred HHHHHHHHhcCcccccccc--ccc-ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCE
Confidence 3344455555665553222 222 5677777777777662 234666777777777777776 443 2466777777
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 77777777666555667777777777777777766666666777777777777777766566666777777777777777
Q ss_pred cccccccccCCCCCcEEeCCCCCCCCc-----CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l~~l-----~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 244 (515)
++..+..+..+++|+.|++++|++..+ ..+++|++|++++|.+.+ .+++|+.++++.|.+++.+|.++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcc
Confidence 766555566777777777777776443 245667777777776653 34578888888888888888777
Q ss_pred hcCC
Q 043235 245 NERS 248 (515)
Q Consensus 245 ~~l~ 248 (515)
+.+.
T Consensus 243 ~~~~ 246 (272)
T 3rfs_A 243 GSVA 246 (272)
T ss_dssp SCBC
T ss_pred cccC
Confidence 6544
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.5e-25 Score=218.34 Aligned_cols=258 Identities=19% Similarity=0.168 Sum_probs=170.8
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCC----ccccCCC-CCCEEECcCCcCcccCchHHHhCC-----
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIP----YSVGEMK-ELTILDLSRNNFTGKLPRPIVSSC----- 84 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~l~~~~~~~l----- 84 (515)
.+++++|++++.+|+.+.. .++|++|+|++|.+++..+ .++.+++ +|++|+|++|.+++..+.. +..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSC
T ss_pred ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccC
Confidence 4678889998777765543 5669999999999987666 7788888 8999999999988433333 3333
Q ss_pred CCCCEEEccCccccccCCccc----cCC-CCCCEEEcccCCCCCcCChhhh----C-CCCCcEEEcccCcCCCCcC----
Q 043235 85 LSLDWLDLSNNNFYGQLFPNY----MNL-TDLGSLYLDNNHFSGKMTDGLL----S-STLLRVLNVSNNMLSGDIP---- 150 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~~---- 150 (515)
++|++|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|++++|.++....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 889999999998876655543 344 7888889988888766555443 3 3588888888888875333
Q ss_pred hhccCCC-CccEEEccCccccccccccc----cCC-CCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccC-C
Q 043235 151 HWIGNFS-VLSVLLMSENYLQGNIPVQL----NNL-KSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLR-S 223 (515)
Q Consensus 151 ~~~~~l~-~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~-~ 223 (515)
..+..++ +|++|++++|++++..+..+ ..+ ++|++|++++|.+.... . ..++..+.. .
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------------~-~~l~~~l~~~~ 224 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--------------Y-AELAYIFSSIP 224 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------------H-HHHHHHHHHSC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH--------------H-HHHHHHHhcCC
Confidence 3334554 78888888888876555433 333 46666666666654311 0 012233333 3
Q ss_pred CCccEEeccCCccCCcCc----hhhhcCCCcCEEEccCccCCCCC-------CccccCCCCCCEEECCCCcCcCCCC
Q 043235 224 STLLTLDLRDNKLFGRIP----HQINERSNLHVLLLRGNYLQGRI-------PNQLCQLRKLSIMDLSRNRLNGPIP 289 (515)
Q Consensus 224 ~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~p 289 (515)
++|++|++++|.+++..+ ..+..+++|++|+|++|.+.+.. +..+..+++|+.||+++|++.+..+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 467777777777765443 22345577777777777744332 2345567778888888888765544
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.2e-24 Score=196.35 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=159.3
Q ss_pred CCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCc-CcccCchHHHhCCCCCCEEEccC-cccccc
Q 043235 23 FSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSCLSLDWLDLSN-NNFYGQ 100 (515)
Q Consensus 23 l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~L~~-n~i~~~ 100 (515)
++ .+|. + .++|++|++++|++++..+.+|.++++|++|++++|. ++ .++...|.++++|++|++++ |.++..
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 65 7777 3 4588899999999887777788889999999999986 77 77776678888999999988 888877
Q ss_pred CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCc---EEEcccC-cCCCCcChhccCCCCcc-EEEccCccccccccc
Q 043235 101 LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR---VLNVSNN-MLSGDIPHWIGNFSVLS-VLLMSENYLQGNIPV 175 (515)
Q Consensus 101 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~ 175 (515)
.+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .++...+..|..+++|+ +|++++|+++...+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 77788888899999999998885 454 77778887 9999998 88866667788888899 999999988844444
Q ss_pred cccCCCCCcEEeCCCCC-CCCc-----CCC-CcccEEEcccCceeeeccccccCCCCccEEeccCCc
Q 043235 176 QLNNLKSLEFIDLSENS-LISL-----SNL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235 (515)
Q Consensus 176 ~l~~l~~L~~L~L~~n~-l~~l-----~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~ 235 (515)
.+.. ++|+.|++++|+ +..+ ..+ +.|++|++++|+++++.+. .+++|+.|+++++.
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 4544 788999999985 7544 356 7889999999998876544 56788889888763
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.1e-24 Score=213.90 Aligned_cols=246 Identities=19% Similarity=0.137 Sum_probs=166.0
Q ss_pred EEECcCCcccccCCccccCCCCCCEEECcCCcCcccCch----HHHhCCC-CCCEEEccCccccccCCccccCC-----C
Q 043235 40 YLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPR----PIVSSCL-SLDWLDLSNNNFYGQLFPNYMNL-----T 109 (515)
Q Consensus 40 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~ 109 (515)
++++++|.+++.+|..+...++|++|+|++|.++ ..+. ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4678888888777777777777888888888887 5554 4556777 78888888888876666666554 7
Q ss_pred CCCEEEcccCCCCCcCChhh----hCC-CCCcEEEcccCcCCCCcChhc----cC-CCCccEEEccCcccccccc----c
Q 043235 110 DLGSLYLDNNHFSGKMTDGL----LSS-TLLRVLNVSNNMLSGDIPHWI----GN-FSVLSVLLMSENYLQGNIP----V 175 (515)
Q Consensus 110 ~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~----~ 175 (515)
+|++|++++|++++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..+ .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 78888888888776555533 333 677777777777765544433 22 2467777777776664322 2
Q ss_pred cccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccc----cccCC-CCccEEeccCCccCCc----Cchhhhc
Q 043235 176 QLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPI----ALLRS-STLLTLDLRDNKLFGR----IPHQINE 246 (515)
Q Consensus 176 ~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~----~~~~~-~~L~~L~Ls~n~i~~~----~~~~~~~ 246 (515)
.+...+ +.|++|++++|.+++..+. .+..+ ++|++|+|++|.+.+. ++..+..
T Consensus 161 ~l~~~~------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 161 ILAAIP------------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp HHHTSC------------------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred HHhcCC------------------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 223332 1455555555555554443 34455 5999999999999863 3445555
Q ss_pred -CCCcCEEEccCccCCCCCC----ccccCCCCCCEEECCCCcCcCCCC-------ccccCCcccccccCC
Q 043235 247 -RSNLHVLLLRGNYLQGRIP----NQLCQLRKLSIMDLSRNRLNGPIP-------SCLGNVPFWREATDD 304 (515)
Q Consensus 247 -l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~p-------~~~~~l~~l~~~~~~ 304 (515)
.++|++|+|++|++++..+ ..+..+++|++|++++|.+.+..+ ..+..++.++.+...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 4699999999999997554 345678999999999999654433 345566666665544
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.2e-25 Score=220.97 Aligned_cols=254 Identities=21% Similarity=0.243 Sum_probs=158.6
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCC----ccccCCCCCCEEECcCCc---CcccCchHH------
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIP----YSVGEMKELTILDLSRNN---FTGKLPRPI------ 80 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---l~~~l~~~~------ 80 (515)
+...++...+. .++..+.. +++|++|+|++|.++...+ ..+..+++|++|+|++|. +++.+|..+
T Consensus 12 ~~~~l~~~~~~-~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 12 KLDAITTEDEK-SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp EESSCCSHHHH-TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccCCCCHHHHH-HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 33333333343 56666665 6789999999988876533 447788889999888864 444455544
Q ss_pred HhCCCCCCEEEccCccccc----cCCccccCCCCCCEEEcccCCCCCcCChhhh----CC---------CCCcEEEcccC
Q 043235 81 VSSCLSLDWLDLSNNNFYG----QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL----SS---------TLLRVLNVSNN 143 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~l~~n 143 (515)
+..+++|++|++++|.++. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3567778888888887765 3455666777777777777777533333332 22 56666666666
Q ss_pred cCC-CCcC---hhccCCCCccEEEccCccccc-----cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCcee-
Q 043235 144 MLS-GDIP---HWIGNFSVLSVLLMSENYLQG-----NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIK- 213 (515)
Q Consensus 144 ~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~- 213 (515)
.++ ...+ ..+..+++|++|++++|++.. ..+..+..+++|+ +|+|++|.++
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~-------------------~L~Ls~n~l~~ 230 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK-------------------VLDLQDNTFTH 230 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC-------------------EEECCSSCCHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc-------------------EEECcCCCCCc
Confidence 665 2222 234455566666666665552 1222344444554 4555555553
Q ss_pred ---eeccccccCCCCccEEeccCCccCCc----Cchhhhc--CCCcCEEEccCccCCC----CCCccc-cCCCCCCEEEC
Q 043235 214 ---GLIPIALLRSSTLLTLDLRDNKLFGR----IPHQINE--RSNLHVLLLRGNYLQG----RIPNQL-CQLRKLSIMDL 279 (515)
Q Consensus 214 ---~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~--l~~L~~L~L~~n~i~~----~~~~~~-~~l~~L~~L~L 279 (515)
..++..+..+++|++|+|++|.+++. ++..+.. +++|++|+|++|.+++ .++..+ ..+++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 33455667777788888888877654 3455533 7788888888888875 355555 55788888888
Q ss_pred CCCcCcCCC
Q 043235 280 SRNRLNGPI 288 (515)
Q Consensus 280 ~~n~i~~~~ 288 (515)
++|++++..
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 888887554
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.6e-23 Score=194.53 Aligned_cols=211 Identities=20% Similarity=0.213 Sum_probs=146.6
Q ss_pred ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCC
Q 043235 202 VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 202 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
.++++++++.++.+ |..+. +.++.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34455555555543 22222 4677777777777777777777777888888888888777777777788888888888
Q ss_pred CcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc
Q 043235 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361 (515)
Q Consensus 282 n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (515)
|++++..+..+.. ++
T Consensus 93 n~l~~~~~~~~~~-----------------------------------------------------------------l~ 107 (251)
T 3m19_A 93 NQLASLPLGVFDH-----------------------------------------------------------------LT 107 (251)
T ss_dssp SCCCCCCTTTTTT-----------------------------------------------------------------CT
T ss_pred CcccccChhHhcc-----------------------------------------------------------------cC
Confidence 8876544443322 56
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecc
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 441 (515)
+|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 77788888888886666667888899999999999987777788889999999999999987777788889999999999
Q ss_pred cCcccccCCCCcccC------CCCcccccCCCCCCCCccCCCCCCC
Q 043235 442 YNNLSGPIPDKEQFA------TFDDCSYKGNSALCGSMIKRKCSSA 481 (515)
Q Consensus 442 ~N~l~~~~p~~~~~~------~l~~~~~~gn~~~c~~~l~~~~~~~ 481 (515)
+|++.+.......+. ........|+. .|+.+-...|..+
T Consensus 188 ~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 188 GNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp SCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 999987744421111 11112233443 5666777778766
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5e-25 Score=218.39 Aligned_cols=240 Identities=21% Similarity=0.210 Sum_probs=177.2
Q ss_pred CCCCccEEeCcCCcCCCCCchhHH---hcccCCcEEECcCCcc---cccCCccc-------cCCCCCCEEECcCCcCcc-
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLG---IIFQKLIYLDMSKNNF---EGNIPYSV-------GEMKELTILDLSRNNFTG- 74 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~---~~~~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~L~~n~l~~- 74 (515)
.+++|++|++++|.+++..+..+. ..+++|++|+|++|.+ ++.+|..+ ..+++|++|+|++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 478899999999999865444432 2378999999999644 44455444 789999999999999984
Q ss_pred ---cCchHHHhCCCCCCEEEccCccccccCCcccc----CC---------CCCCEEEcccCCCCC-cCC---hhhhCCCC
Q 043235 75 ---KLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM----NL---------TDLGSLYLDNNHFSG-KMT---DGLLSSTL 134 (515)
Q Consensus 75 ---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~i~~-~~~---~~~~~l~~ 134 (515)
.++..+ ..+++|++|++++|.++...+..+. .+ ++|++|++++|+++. ..+ ..+..+++
T Consensus 110 ~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 255444 7799999999999999754444443 34 899999999999973 333 46778899
Q ss_pred CcEEEcccCcCCC-----CcChhccCCCCccEEEccCcccc----ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEE
Q 043235 135 LRVLNVSNNMLSG-----DIPHWIGNFSVLSVLLMSENYLQ----GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHI 205 (515)
Q Consensus 135 L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L 205 (515)
|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+..+++|+.|++++|.+.....
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------- 261 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA------- 261 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-------
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH-------
Confidence 9999999999973 23447889999999999999996 5677778888888888888887643210
Q ss_pred EcccCceeeecccccc--CCCCccEEeccCCccCC----cCchhh-hcCCCcCEEEccCccCCCCC
Q 043235 206 YLQNNAIKGLIPIALL--RSSTLLTLDLRDNKLFG----RIPHQI-NERSNLHVLLLRGNYLQGRI 264 (515)
Q Consensus 206 ~L~~n~i~~~~~~~~~--~~~~L~~L~Ls~n~i~~----~~~~~~-~~l~~L~~L~L~~n~i~~~~ 264 (515)
..++..+. .+++|++|+|++|.+++ .+|..+ ..+++|++|++++|++++..
T Consensus 262 --------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 --------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp --------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred --------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 00233442 36677777777777765 355555 45677777777777777554
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.6e-23 Score=191.40 Aligned_cols=180 Identities=21% Similarity=0.245 Sum_probs=160.4
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
...++++++++.++ .+|..+ .+++++|++++|.+++..+.+|.++++|++|+|++|.++ .++...+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence 45789999999998 888776 468999999999999888889999999999999999998 6777777889999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999999887788899999999999999999877777889999999999999999777778999999999999999999
Q ss_pred ccccccccCCCCCcEEeCCCCCCCC
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLIS 195 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~ 195 (515)
+..+..+..+++|+.|++++|++..
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8777788888999999988888743
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=5.8e-23 Score=189.29 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=147.8
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCcc-ccccCCccccCCCCCCEEEccc-CCCCCcC
Q 043235 48 FEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNN-FYGQLFPNYMNLTDLGSLYLDN-NHFSGKM 125 (515)
Q Consensus 48 i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~ 125 (515)
++ .+|. +. ++|++|++++|+++ .++...|..+++|++|++++|+ ++...+..|.++++|++|++++ |+++...
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 55 4555 33 47889999999888 7777667888899999999886 8777667888888999999988 8888777
Q ss_pred ChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc---EEEccCc-cccccccccccCCCCCc-EEeCCCCCCCCcCCCC
Q 043235 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLMSEN-YLQGNIPVQLNNLKSLE-FIDLSENSLISLSNLS 200 (515)
Q Consensus 126 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~l~~l~ 200 (515)
+..|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|++..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~----- 170 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS----- 170 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-----
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-----
Confidence 7788888888999998888885 555 77777777 8888888 88766666677777777 77776665543
Q ss_pred cccEEEcccCceeeeccccccCCCCccEEeccCCc-cCCcCchhhhcC-CCcCEEEccCccCCCCCCccccCCCCCCEEE
Q 043235 201 FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMD 278 (515)
Q Consensus 201 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 278 (515)
+.+..+.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+
T Consensus 171 --------------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~ 232 (239)
T 2xwt_C 171 --------------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELI 232 (239)
T ss_dssp --------------ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEE
T ss_pred --------------cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceee
Confidence 33333433 566667777763 665555566666 6777777777777643322 456677777
Q ss_pred CCCC
Q 043235 279 LSRN 282 (515)
Q Consensus 279 L~~n 282 (515)
++++
T Consensus 233 l~~~ 236 (239)
T 2xwt_C 233 ARNT 236 (239)
T ss_dssp CTTC
T ss_pred ccCc
Confidence 6665
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4e-23 Score=198.15 Aligned_cols=223 Identities=19% Similarity=0.181 Sum_probs=182.7
Q ss_pred CCCCCEEECcCCcCcccCchHH--HhCCCCCCEEEccCccccccCCccc--cCCCCCCEEEcccCCCCCcCC----hhhh
Q 043235 59 MKELTILDLSRNNFTGKLPRPI--VSSCLSLDWLDLSNNNFYGQLFPNY--MNLTDLGSLYLDNNHFSGKMT----DGLL 130 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~ 130 (515)
...++.+.+.++.+....-..+ +..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3457888998887752111111 1235679999999999998888887 899999999999999986544 3456
Q ss_pred CCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc--c--cccccCCCCCcEEeCCCCCCCCcC--------C
Q 043235 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN--I--PVQLNNLKSLEFIDLSENSLISLS--------N 198 (515)
Q Consensus 131 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~l~--------~ 198 (515)
.+++|++|++++|.+.+..+..++.+++|++|++++|++.+. . +..+..+++|++|++++|++..+. .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999988888999999999999999997642 2 233468899999999999997543 4
Q ss_pred CCcccEEEcccCceeeeccccccCC---CCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCC
Q 043235 199 LSFVKHIYLQNNAIKGLIPIALLRS---STLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLS 275 (515)
Q Consensus 199 l~~L~~L~L~~n~i~~~~~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 275 (515)
++.|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 5899999999999999877777776 69999999999998 5566664 7999999999999964 33 67889999
Q ss_pred EEECCCCcCcC
Q 043235 276 IMDLSRNRLNG 286 (515)
Q Consensus 276 ~L~L~~n~i~~ 286 (515)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999864
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.6e-23 Score=199.02 Aligned_cols=212 Identities=19% Similarity=0.290 Sum_probs=137.8
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
++..+.+..+.+++.++. .. +++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|+
T Consensus 20 ~~~~~~l~~~~~~~~~~~--~~-l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~ 91 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVTQ--AD-LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELE 91 (308)
T ss_dssp HHHHHHTTCSSTTSEECH--HH-HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEE
T ss_pred HHHHHHhCCCCcCceecH--HH-cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEE
Confidence 334445555555532322 22 5677777777777773 33 5777777777777777777 5555 56777777777
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 92 L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 777777642 3567777777777777777643 2 36677777777777777764433 6666777777777777664
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 251 (515)
..+ +..+++|+.|++++|++ ++..+ +..+++|++|++++|++++.. .+..+++|+
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l-------------------~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKI-------------------SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLF 220 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCC-------------------CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred Chh--hcCCCCCCEEECCCCcc-------------------CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence 322 55555555555555554 43322 566677888888888776544 367777888
Q ss_pred EEEccCccCCC
Q 043235 252 VLLLRGNYLQG 262 (515)
Q Consensus 252 ~L~L~~n~i~~ 262 (515)
.|++++|++++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 88888888763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=2.3e-23 Score=199.89 Aligned_cols=224 Identities=18% Similarity=0.167 Sum_probs=137.5
Q ss_pred CccEEeCcCCcCCCC----CchhHHhcccCCcEEECcCCcccccCCccc--cCCCCCCEEECcCCcCcccCc---hHHHh
Q 043235 12 KLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKNNFEGNIPYSV--GEMKELTILDLSRNNFTGKLP---RPIVS 82 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~l~---~~~~~ 82 (515)
.++.+.+.++.++.. +...+ . +++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~-~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVL-A-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHH-H-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhc-c-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 456666666665421 11111 1 3567777777777777777666 777777777777777764333 12223
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc--C--ChhhhCCCCCcEEEcccCcCCCCcCh----hcc
Q 043235 83 SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK--M--TDGLLSSTLLRVLNVSNNMLSGDIPH----WIG 154 (515)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~ 154 (515)
.+++|++|++++|++++..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++ ..+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 567777777777777766666777777777777777776431 1 122345667777777777775 2222 245
Q ss_pred CCCCccEEEccCccccccccccccCC---CCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEec
Q 043235 155 NFSVLSVLLMSENYLQGNIPVQLNNL---KSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDL 231 (515)
Q Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L 231 (515)
.+++|++|++++|++.+..|..+..+ ++|++|++++| +++.+ |..+. ++|++|++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-------------------~l~~l-p~~~~--~~L~~L~L 279 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-------------------GLEQV-PKGLP--AKLRVLDL 279 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-------------------CCCSC-CSCCC--SCCSCEEC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-------------------CCCch-hhhhc--CCCCEEEC
Confidence 56677777777777766555555444 35555555554 44432 33332 57788888
Q ss_pred cCCccCCcCchhhhcCCCcCEEEccCccCCC
Q 043235 232 RDNKLFGRIPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 232 s~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
++|++++. |. +..+++|+.|++++|++++
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88887754 32 5667788888888887763
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=6.9e-23 Score=199.90 Aligned_cols=243 Identities=18% Similarity=0.154 Sum_probs=175.5
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE-EEc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW-LDL 92 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~-L~L 92 (515)
++++.++++++ .+|..+ ++++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67899999998 889876 4689999999999997666789999999999999999865788888888888775 566
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEccc-CcCCCCcChhccCCC-CccEEEccCcccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSN-NMLSGDIPHWIGNFS-VLSVLLMSENYLQ 170 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 170 (515)
++|+++...+..|.++++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888877788888889999999999888866666666666777787765 456544444555554 4667777777776
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCc
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 250 (515)
...+..+ ...+|+++++++ +|.++.+.+.+|..+++|++|++++|+|+...+.. +.+|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~------------------~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L 225 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSD------------------NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENL 225 (350)
T ss_dssp EECTTSS-TTEEEEEEECTT------------------CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTC
T ss_pred CCChhhc-cccchhHHhhcc------------------CCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccc
Confidence 4333322 333444444432 34556666667888889999999999988554444 4456
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCc
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNR 283 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 283 (515)
+.|.+.++.--..+| .+..+++|+.+++.++.
T Consensus 226 ~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 666655544333555 47788999999987653
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=7.5e-24 Score=205.85 Aligned_cols=256 Identities=20% Similarity=0.228 Sum_probs=179.1
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcc--cCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCccc-CchHHHhCCCCC
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIF--QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGK-LPRPIVSSCLSL 87 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-l~~~~~~~l~~L 87 (515)
..++.++++++.+. +..+.. + +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++ ..+..+++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH-HHHTTBCCC
T ss_pred hhheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH-HHHhhCCCC
Confidence 34788888888776 334433 4 7889999999888865554 56788899999998887743 44 345778888
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccC-CCCCc-CChhhhCCCCCcEEEcccC-cCCCC-cChhccCCC-CccEE
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNN-HFSGK-MTDGLLSSTLLRVLNVSNN-MLSGD-IPHWIGNFS-VLSVL 162 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L 162 (515)
++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 88888888887777777888888888888888 56642 4555677888888888888 77643 456677777 88888
Q ss_pred EccCcc--cc-ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCc-cCC
Q 043235 163 LMSENY--LQ-GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK-LFG 238 (515)
Q Consensus 163 ~l~~n~--l~-~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~-i~~ 238 (515)
++++|. ++ +.++..+..+++|+.|++++|.. +++..+..+..+++|++|++++|. +..
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~------------------l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM------------------LKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT------------------CCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc------------------CCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 888873 43 33455555666666666666541 344445567777888888888884 333
Q ss_pred cCchhhhcCCCcCEEEccCccCCCCCCccccCC-CCCCEEECCCCcCcCCCCccccC
Q 043235 239 RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQL-RKLSIMDLSRNRLNGPIPSCLGN 294 (515)
Q Consensus 239 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~p~~~~~ 294 (515)
.....+..+++|+.|++++| ++.. .+..+ .+++.|++++|.+++..|..++.
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 33335777888999999888 4432 23322 23666668899998888876654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.4e-22 Score=193.82 Aligned_cols=194 Identities=24% Similarity=0.365 Sum_probs=157.8
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
.+.+++|++|++++|.++ .++ .+.. +++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCC
Confidence 345789999999999998 677 4544 7999999999999995444 999999999999999998 6663 688999
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++. ..+..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 109 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 99999999999864 348999999999999999986543 8899999999999999986443 89999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
|.+++..+ +..+++|+.|++++|++..+ . .+..+++|+.|++++|+++
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~-------------------~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDV-------------------S--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBC-------------------G--GGTTCTTCCEEEEEEEEEE
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCcc-------------------c--cccCCCCCCEEEccCCeee
Confidence 99986543 67777777777777766433 2 2455566666666666664
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.6e-23 Score=203.60 Aligned_cols=201 Identities=19% Similarity=0.143 Sum_probs=116.8
Q ss_pred CCCCEEECcCCcCcccCchHHHhCC--CCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCc
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSC--LSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLR 136 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~ 136 (515)
..++.++++++.+. ...+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34678888877665 2223444 6777888887777655433 44567777777777766543 455566666677
Q ss_pred EEEcccCcCCCCcChhccCCCCccEEEccCc-ccccc-ccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceee
Q 043235 137 VLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN-YLQGN-IPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 137 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~ 214 (515)
+|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++|. .+++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------------------~l~~ 183 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------------------DFTE 183 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT------------------TCCH
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC------------------CcCh
Confidence 7777766666555556666666666666666 44432 33334445555555555440 2332
Q ss_pred e-ccccccCCC-CccEEeccCC--ccC-CcCchhhhcCCCcCEEEccCcc-CCCCCCccccCCCCCCEEECCCCc
Q 043235 215 L-IPIALLRSS-TLLTLDLRDN--KLF-GRIPHQINERSNLHVLLLRGNY-LQGRIPNQLCQLRKLSIMDLSRNR 283 (515)
Q Consensus 215 ~-~~~~~~~~~-~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~ 283 (515)
. .+..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 1 233445555 6666666666 333 2334455556666666666666 554455555666666666666664
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.8e-21 Score=189.84 Aligned_cols=204 Identities=15% Similarity=0.095 Sum_probs=162.0
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccC-CccccCCCCCCE-EECcCCcCcccCchH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNI-PYSVGEMKELTI-LDLSRNNFTGKLPRP 79 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~-L~L~~n~l~~~l~~~ 79 (515)
|.++|..-.+++++|+|++|+|+ .+|...+..+++|++|+|++|++.+.+ +.+|.+++++++ +.++.|+++ .++..
T Consensus 21 Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPE 98 (350)
T ss_dssp CCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTT
T ss_pred CCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCch
Confidence 56777766789999999999999 888776666899999999999986544 467899999875 666779998 78888
Q ss_pred HHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc-CCCCCcCChhhhCCC-CCcEEEcccCcCCCCcChhccCCC
Q 043235 80 IVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN-NHFSGKMTDGLLSST-LLRVLNVSNNMLSGDIPHWIGNFS 157 (515)
Q Consensus 80 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~ 157 (515)
.|..+++|++|++++|+++...+..+....++..|++.+ +++....+..|..+. .+++|++++|+++. ++.......
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhcccc
Confidence 889999999999999999877776777788889999966 577766666777664 68999999999984 555555667
Q ss_pred CccEEEccC-ccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcc
Q 043235 158 VLSVLLMSE-NYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQ 208 (515)
Q Consensus 158 ~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~ 208 (515)
+|+++++.+ |.++...+..|..+++|++|++++|+++.++ .+..|++|.+.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 899999985 6777555567888999999999988887664 24444444443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.7e-21 Score=171.09 Aligned_cols=178 Identities=22% Similarity=0.232 Sum_probs=95.9
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|+++ .++...|..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45666666666 566544 346677777777666555555666666666666666666 5555555556666666666
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI 173 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (515)
+|++++..+..|.++++|++|++++|++++..+..+..+++ |++|++++|++++..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------------------------L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ------------------------LKDLRLYQNQLKSVP 140 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------------------CCEEECCSSCCSCCC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc------------------------CCEEECCCCccceeC
Confidence 66665444444555555555555555555444434444444 444444444444333
Q ss_pred cccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccC
Q 043235 174 PVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLR 222 (515)
Q Consensus 174 ~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 222 (515)
+..+..+++|+.|++++|.+. ..++.|+.|++..|++++.+|..++.
T Consensus 141 ~~~~~~l~~L~~L~l~~N~~~--~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNPWD--CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTTTTTCTTCCEEECCSCCBC--CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred HHHhccCCCccEEEecCCCee--cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 333444555555555554332 12233444445555555555544443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7e-21 Score=171.35 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=151.5
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|....++|++|++++|+++ .++...+..+++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+
T Consensus 19 l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 96 (208)
T 2o6s_A 19 RTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVF 96 (208)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccCCCCCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHh
Confidence 45677777889999999999999 666665555899999999999999777777899999999999999999 7888777
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccE
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSV 161 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 161 (515)
..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~ 169 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY 169 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHH
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHH
Confidence 899999999999999998777778999999999999999998777778999999999999997764 4568999
Q ss_pred EEccCccccccccccccCCCC
Q 043235 162 LLMSENYLQGNIPVQLNNLKS 182 (515)
Q Consensus 162 L~l~~n~l~~~~~~~l~~l~~ 182 (515)
|+++.|++++.+|..++.++.
T Consensus 170 L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHhCCceeeccCccccC
Confidence 999999999999988776654
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1.3e-20 Score=184.48 Aligned_cols=175 Identities=25% Similarity=0.225 Sum_probs=141.1
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
+.+++++++++ .+|..+ .+.+++|+|++|.|++..+..|. ++++|++|+|++|+++ .++...|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 68899999998 788765 45789999999999987777787 8999999999999998 677666788999999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhc---cCCCCccEEEccCccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWI---GNFSVLSVLLMSENYL 169 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l 169 (515)
++|+++...+..|.++++|++|+|++|+++...+..|..+++|++|++++|.++...+..| ..+++|+.|++++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999988777788889999999999999988778888888999999999998886544445 5678888888888888
Q ss_pred cccccccccCCCC--CcEEeCCCCCC
Q 043235 170 QGNIPVQLNNLKS--LEFIDLSENSL 193 (515)
Q Consensus 170 ~~~~~~~l~~l~~--L~~L~L~~n~l 193 (515)
+...+..+..++. ++.|++++|.+
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CccCHHHhhhccHhhcceEEecCCCc
Confidence 8655556666665 35666666655
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=2.7e-20 Score=176.45 Aligned_cols=192 Identities=20% Similarity=0.312 Sum_probs=128.4
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+.++..+.+..+.+++..+. .. +++|++|++++|.++.. + .+..+++|++|++++|.++ .++. +..+++|++
T Consensus 23 l~~~~~~~l~~~~~~~~~~~--~~-l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~ 94 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVTQ--NE-LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGW 94 (291)
T ss_dssp HHHHHHHHTTCSCTTSEECH--HH-HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred HHHHHHHHhcCCCcccccch--hh-cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCE
Confidence 33444455666666533222 22 56788888888877743 3 4777788888888888887 5555 567788888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
|++++|.+++ ...+..+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++
T Consensus 95 L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 95 LFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 8888887765 23477777888888888877743 4567777778888877777754 4577777777777777777
Q ss_pred cccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~ 238 (515)
.+..+ +..+++|+.|++++|++. ++ + .+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~-------------------~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHIS-------------------DL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCC-------------------BC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCC-------------------CC-h-hhccCCCCCEEECcCCcccC
Confidence 75433 666666666666666553 32 1 35566677777777777654
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=166.64 Aligned_cols=152 Identities=19% Similarity=0.265 Sum_probs=104.4
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCC-ccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIP-YSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
+.+++++|.++ .+|..+ .+.+++|+|++|.+++..+ ..|.++++|++|+|++|.++ .++...|..+++|++|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence 57777777777 677655 3456777777777775533 44677777777777777777 555555567777777777
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777776666666677777777777777777666666666677777777777776655666666666666666666655
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=8e-20 Score=165.65 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=105.3
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+.++++++.++ .+|..+ .++|++|++++|.|++..+..|..+++|++|+|++|+++ .++...|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 56778888777 677655 357788888888777666667777777777777777777 4544445677777777777
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
+|+++...+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777555555666777777777777777666666666667777777777666555555666666666666666554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.1e-19 Score=172.17 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=145.6
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+++|+.|++++|.++ .++. +.. +++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTT
T ss_pred hhhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCC
Confidence 345788999999999998 6664 444 7999999999999996544 999999999999999998 6665 688999
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 99999999999863 6789999999999999999865 678999999999999999997655 89999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCC
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l 193 (515)
|.+++. + .+..+++|+.|++++|++
T Consensus 188 N~i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 188 NHISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred CcCCCC-h-hhccCCCCCEEECcCCcc
Confidence 999853 3 366777777666666654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2e-19 Score=164.19 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=123.4
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.++++++.++ .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|...|..+++|++|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence 467888888887 888765 478999999999998877888888999999999999887 788777788888888888
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
++|+++...+..|..+++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888888766666788888888888888887 566777778888888888888876666667777777777777777663
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=5.9e-20 Score=190.55 Aligned_cols=194 Identities=19% Similarity=0.308 Sum_probs=141.8
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
|...+..+..+.++.+.+.+.++ ... +++|++|++++|.+.. ++ .+..+++|++|+|++|.++ .++. +..++
T Consensus 16 pd~~l~~l~~l~l~~~~i~~~~~--~~~-L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~ 87 (605)
T 1m9s_A 16 PDDAFAETIKDNLKKKSVTDAVT--QNE-LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLK 87 (605)
T ss_dssp CSHHHHHHHHHHTTCSCTTSEEC--HHH-HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCT
T ss_pred CcHHHHHHHHHhccCCCcccccc--hhc-CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh--hccCC
Confidence 33445556666777777764333 222 6788888888888874 33 5788888888888888887 5655 57788
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEcc
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (515)
+|++|+|++|.+++ ++.+..+++|++|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|+
T Consensus 88 ~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 88888888888875 34678888888888888888753 4577888888888888888754 567788888888888
Q ss_pred CccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeee
Q 043235 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGL 215 (515)
Q Consensus 166 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~ 215 (515)
+|.+.+..| +..+++|+.|+|++|++..++ .+++|+.|+|++|.+.+.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 888886555 777888888888888775443 556666677776666654
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3.2e-19 Score=182.98 Aligned_cols=192 Identities=29% Similarity=0.402 Sum_probs=107.5
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
+|++|++++|.+++ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 66677777776664 44444 256777777777766 666 235667777777776665 333 443 6677777
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCc
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL 196 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l 196 (515)
++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|++..+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 7776664 333 45666777777776664 343 45666677777776664 444 43 5666666666665544
Q ss_pred CCCC-cccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccC
Q 043235 197 SNLS-FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ 270 (515)
Q Consensus 197 ~~l~-~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 270 (515)
+.+. +| +.....|+.|++++|+|+ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus 196 p~~~~~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PAVPVRN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCCC-------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhHHHhh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3211 22 000111255555555555 34444555555555555555555554444443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=162.26 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=132.2
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
-+++++++|.++ .+|..+. ..+++|++++|.+++..+..+|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 468999999998 4676553 4578999999999844355667889999999999999998877789999999999999
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
+|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999888888999999999999999999888888999999999999999999887888888888888888888764
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.1e-19 Score=161.72 Aligned_cols=152 Identities=21% Similarity=0.250 Sum_probs=125.1
Q ss_pred cEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 39 IYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 39 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
+.++++++.++ .+|..+. ++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 67888888888 4666554 68889999999888 67766678888899999999988887788888888899999999
Q ss_pred CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 119 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
|+++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8888766667788888888888888888877888888888888888888888777777888888888888877764
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.5e-19 Score=183.77 Aligned_cols=188 Identities=24% Similarity=0.312 Sum_probs=120.7
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEc
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNV 140 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 140 (515)
+|++|++++|.++ .+|..+ .++|++|++++|.++. +| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 6666666666666 466544 2556666666666652 33 334566666666666654 333 332 5556666
Q ss_pred ccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccc
Q 043235 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.++++ |. +
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----------------------~l~~L~~L~Ls~N~L~~l-p~-l 178 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----------------------LPTSLEVLSVRNNQLTFL-PE-L 178 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----------------------CCTTCCEEECCSSCCSCC-CC-C
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----------------------cCCCcCEEECCCCCCCCc-ch-h
Confidence 6655553 333 34555555555555543 222 234566666666666663 33 4
Q ss_pred cCCCCccEEeccCCccCCcCchhhhcCCCc-------CEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCcccc
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNL-------HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 293 (515)
. ++|++|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 179 ~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 4 78999999999998 4555 544 67 99999999999 5787788899999999999999988887776
Q ss_pred CCc
Q 043235 294 NVP 296 (515)
Q Consensus 294 ~l~ 296 (515)
.+.
T Consensus 252 ~l~ 254 (571)
T 3cvr_A 252 QQT 254 (571)
T ss_dssp HHH
T ss_pred Hhh
Confidence 644
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.4e-19 Score=177.12 Aligned_cols=167 Identities=25% Similarity=0.235 Sum_probs=146.3
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHh-cccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGI-IFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
|..+|..-.+.++.|++++|+++ .++...+. .+++|++|+|++|.|++..+.+|.++++|++|+|++|+++ .++...
T Consensus 30 l~~iP~~~~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 107 (361)
T 2xot_A 30 LPNVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFL 107 (361)
T ss_dssp CSSCCSSCCTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTT
T ss_pred cCccCccCCCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHH
Confidence 56677777788999999999999 56555543 4899999999999999888889999999999999999998 788877
Q ss_pred HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhh---hCCCCCcEEEcccCcCCCCcChhccCCC
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL---LSSTLLRVLNVSNNMLSGDIPHWIGNFS 157 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 157 (515)
|..+++|++|+|++|+|+...+..|.++++|++|+|++|+++...+..| ..+++|++|++++|.++...+..+..++
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 8999999999999999998888999999999999999999997655555 5789999999999999977667888888
Q ss_pred C--ccEEEccCcccc
Q 043235 158 V--LSVLLMSENYLQ 170 (515)
Q Consensus 158 ~--L~~L~l~~n~l~ 170 (515)
. ++.|++++|.+.
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 7 489999999886
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.3e-19 Score=160.85 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=112.3
Q ss_pred ccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCC
Q 043235 226 LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDD 305 (515)
Q Consensus 226 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~ 305 (515)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|++++|.+....+..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 455666666665 3444332 57777777777777666777777777777777777775433333222
Q ss_pred CCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccc
Q 043235 306 SSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ 385 (515)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 385 (515)
+++|++|+|++|++++..+..|..++
T Consensus 87 ------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 87 ------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ------------------------------------------------------CCCcCEEECCCCcCCccChhHhCcch
Confidence 56677777777777766666677788
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 113 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888888888887 667778888888888888888886666778888888888888888887655
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=7.5e-19 Score=182.29 Aligned_cols=196 Identities=20% Similarity=0.255 Sum_probs=129.0
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEc
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNV 140 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 140 (515)
++..+.+..+.+...++ +..+++|+.|++++|.+... +.+..+++|+.|+|++|++.+..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34455666666663333 24567788888888877643 357777888888888887775443 677777888888
Q ss_pred ccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccc
Q 043235 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++|.+++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++ +++ ..+
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l-------------------~~l--~~l 149 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI-------------------TDI--TVL 149 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCC-------------------CCC--GGG
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCcc-------------------CCc--hhh
Confidence 8777764 23 567777777777777777642 3355566666666665554 433 345
Q ss_pred cCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccc
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~ 292 (515)
..+++|+.|+|++|++.+..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+.....+
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccc
Confidence 666777777777777765544 66777777777777777743 356777777777777777765443333
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1e-18 Score=155.55 Aligned_cols=150 Identities=14% Similarity=0.221 Sum_probs=87.9
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456666666666666 334 4666666666666666555 3432 3556666666666666665555566666666666
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCc-CCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNM-LSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 193 (515)
++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 666666665555666666666666666665 44 233 455666666666666666532 2 455555555555555554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=3.1e-19 Score=166.45 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=92.4
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+.+++.++++++.++ .++ .+.. +++|++|++++|.++. ++ .+..+++|++|++++|+++ .++. +..+++
T Consensus 15 d~~l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~ 86 (263)
T 1xeu_A 15 DPGLANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTK 86 (263)
T ss_dssp SHHHHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSS
T ss_pred CHHHHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCC
Confidence 334455555666666665 444 2333 5566666666666652 33 4566666666666666665 4444 455666
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++.. . +.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++
T Consensus 87 L~~L~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 87 LEELSVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCEEECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCC
Confidence 666666666665421 1 222 5555555555555532 2355555555555555555532 2 344555555555555
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeee
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGL 215 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~ 215 (515)
|++++. ..+. .+++|+.|++++|.++..
T Consensus 160 N~i~~~--~~l~-------------------~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLT-------------------RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTST-------------------TCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhc-------------------cCCCCCEEeCCCCcccCC
Confidence 555432 2233 445566666666666654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=6.6e-19 Score=156.82 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=132.8
Q ss_pred CCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCC
Q 043235 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSC 84 (515)
Q Consensus 5 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l 84 (515)
+..+.+++|++|++++|.++ .+| .+.. +++|++|++++|.++ .+..+..+++|++|++++|.+++..+.. +..+
T Consensus 38 i~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l 111 (197)
T 4ezg_A 38 ITEAQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPN-LSGL 111 (197)
T ss_dssp CBHHHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTC
T ss_pred CChhhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChh-hcCC
Confidence 34456789999999999998 778 4555 799999999999877 3458999999999999999998545554 4789
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEEcccCC-CCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEE
Q 043235 85 LSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL 163 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 163 (515)
++|++|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|++|++++|.+++. + .+..+++|++|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEE
Confidence 999999999999998778889999999999999998 664 44 689999999999999999853 4 688999999999
Q ss_pred ccCccccc
Q 043235 164 MSENYLQG 171 (515)
Q Consensus 164 l~~n~l~~ 171 (515)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 99999863
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.7e-18 Score=161.38 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=124.2
Q ss_pred ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCC
Q 043235 202 VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 202 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
+..++++++.++++. .+..+++|++|++++|+++. ++ .+..+++|+.|++++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 445555666665543 45667788888888888764 33 67778888888888888875443 77888888888888
Q ss_pred CcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc
Q 043235 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361 (515)
Q Consensus 282 n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (515)
|++++. |.. . .+
T Consensus 95 N~l~~l-~~~------------------------------------------------------------------~-~~ 106 (263)
T 1xeu_A 95 NRLKNL-NGI------------------------------------------------------------------P-SA 106 (263)
T ss_dssp SCCSCC-TTC------------------------------------------------------------------C-CS
T ss_pred CccCCc-Ccc------------------------------------------------------------------c-cC
Confidence 887642 110 0 15
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecc
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 441 (515)
+|++|++++|++++. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 678888888888853 3 578888899999999988854 3 688888999999999998865 678888899999999
Q ss_pred cCccccc
Q 043235 442 YNNLSGP 448 (515)
Q Consensus 442 ~N~l~~~ 448 (515)
+|++++.
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 9988866
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=8.9e-19 Score=169.27 Aligned_cols=215 Identities=9% Similarity=-0.003 Sum_probs=120.8
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCc----CCCCcChhccCCCCc
Q 043235 84 CLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNM----LSGDIPHWIGNFSVL 159 (515)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L 159 (515)
|++|+.+++.+ .++.+...+|.++++|+.+++++|.+..+.+.+|..+.++..+....+. ........|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666655 5555555556666666666666665555555555555555544443311 111122233333344
Q ss_pred c-EEEccCcccc-ccccccccCCCCCcEEeCCCCCC----CCcC-CCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 160 S-VLLMSENYLQ-GNIPVQLNNLKSLEFIDLSENSL----ISLS-NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 160 ~-~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l----~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
+ .+.+.....- ......-....+++.+.+.++-. ..+. .+++|+.+++++|+++.+.+.+|.+|.+|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 3 2222211100 00000001122333444333211 0011 25677777777777777777778888888888887
Q ss_pred CCccCCcCchhhhcCCCcC-EEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccc
Q 043235 233 DNKLFGRIPHQINERSNLH-VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~ 301 (515)
+| ++.+...+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++...+.+|.+++.|+.+
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 77 6666677777787887 788777 6666667777788888888887777776666777777776654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=6.3e-21 Score=196.69 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=54.3
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccC-hhhhcCccCCCeeeCCCCcccccCCc---cccCCCCC
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAI-PESFSNLKMIESLDLSRNKLSGQIPP---QLTELNFL 435 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L 435 (515)
+++|+.|+|++|++++ +| .+..+++|++|+|++|++++.. |..|..+++|+.|+|++|++++..|. .+..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 4566667777777764 45 6777777777777777777665 77777777888888888877755442 23346777
Q ss_pred CEEec
Q 043235 436 SNFNV 440 (515)
Q Consensus 436 ~~L~L 440 (515)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 77754
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=4.4e-18 Score=150.68 Aligned_cols=91 Identities=24% Similarity=0.369 Sum_probs=53.4
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEe
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFN 439 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 439 (515)
+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 34455555555555545555555556666666666666555555566666666666666666655566666666666666
Q ss_pred cccCcccccCC
Q 043235 440 VSYNNLSGPIP 450 (515)
Q Consensus 440 Ls~N~l~~~~p 450 (515)
+++|++++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 66666655544
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=5.4e-18 Score=163.76 Aligned_cols=289 Identities=12% Similarity=0.055 Sum_probs=161.8
Q ss_pred ccCCcEEECcCCcccccCCccccC-CCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccC------
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGE-MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMN------ 107 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------ 107 (515)
+.+++.|.++++ +.......+.. +++|++|||++|++. ..... ...++.++.+.+..|.| ...+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~-~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGK-AGTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEES-SSSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCc-ccccccccccccccccc---CHHHhcccccccc
Confidence 356778877764 22122223333 677777777777765 11100 01122244455555533 2345666
Q ss_pred --CCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc----cccccccccCCC
Q 043235 108 --LTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL----QGNIPVQLNNLK 181 (515)
Q Consensus 108 --l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~l~~l~ 181 (515)
+++|+.+++.+ .++.+...+|..+++|+.+++.+|.+....+.+|..+.++..+....+.. ......+|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77777777777 66666666777777777777777776655566666666565555544221 111122233344
Q ss_pred CCc-EEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh-hcCCCcCEEEccCcc
Q 043235 182 SLE-FIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NERSNLHVLLLRGNY 259 (515)
Q Consensus 182 ~L~-~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~ 259 (515)
.|+ .+++....- +.......-....++..+.+.++-.. .....+ ..+++|+.++|++|+
T Consensus 177 ~L~~~i~~~~~~~------------------l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 177 PLETTIQVGAMGK------------------LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp CCEEEEEECTTCC------------------HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBC
T ss_pred ccceeEEecCCCc------------------HHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCC
Confidence 443 222221110 00000011112334555555554221 111122 236777777777777
Q ss_pred CCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccc
Q 043235 260 LQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQD 339 (515)
Q Consensus 260 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
++.+.+.+|..+++|+.+++.+| +....+.+|.+
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~--------------------------------------------- 271 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN--------------------------------------------- 271 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT---------------------------------------------
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhC---------------------------------------------
Confidence 77666677777777777777776 54333333332
Q ss_pred cccceeeeccCccccccccccccCC-EEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeC
Q 043235 340 QQVGAKFVTKNRYEFFIGSNLNYMA-GLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 416 (515)
+.+|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 272 --------------------~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 --------------------CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --------------------CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred --------------------ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 45566 677776 566566677888888888888888888777788888888888763
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=9.6e-20 Score=187.89 Aligned_cols=181 Identities=20% Similarity=0.203 Sum_probs=131.8
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCc-------------ccccCCccccCCCCCCEEE-CcCCcCc
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNN-------------FEGNIPYSVGEMKELTILD-LSRNNFT 73 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~ 73 (515)
..+++|+.|++++|+++ .+|..+.. +++|+.|++++|. +.+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45778889999999997 88999887 7899999987775 4556677788888888888 6666543
Q ss_pred ccCchHHH-----hC--CCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCC
Q 043235 74 GKLPRPIV-----SS--CLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 74 ~~l~~~~~-----~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
.++...+ .. ...|++|++++|.+++ +|. +..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 3332110 00 1257788888888775 344 777888888888888887 56777788888888888888887
Q ss_pred CCcChhccCCCCccEEEccCccccccc-cccccCCCCCcEEeCCCCCCCCc
Q 043235 147 GDIPHWIGNFSVLSVLLMSENYLQGNI-PVQLNNLKSLEFIDLSENSLISL 196 (515)
Q Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~l 196 (515)
+ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++..+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5 45 6777888888888888887665 77777777777777777766443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.7e-17 Score=146.95 Aligned_cols=132 Identities=27% Similarity=0.358 Sum_probs=94.0
Q ss_pred cEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCc-cccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCC
Q 043235 227 LTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPN-QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDD 305 (515)
Q Consensus 227 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~ 305 (515)
+++++++|+++ .+|..+.. ++++|++++|++++..+. .+..+++|++|++++|.+++..|..+..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56677777664 44443332 677777777777755543 3677777777777777777655554433
Q ss_pred CCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccc
Q 043235 306 SSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ 385 (515)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 385 (515)
+++|++|+|++|++++..+..|..++
T Consensus 77 ------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 77 ------------------------------------------------------ASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp ------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred ------------------------------------------------------cccCCEEECCCCcCCccCHHHhcCCC
Confidence 45677777777777777777778888
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCC
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIP 426 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 426 (515)
+|++|+|++|++++..|..|..+++|++|+|++|.+.+..+
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888888888887788888888888888888888875543
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=4.4e-16 Score=153.59 Aligned_cols=246 Identities=6% Similarity=0.001 Sum_probs=121.1
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEE
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLY 115 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 115 (515)
..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++ .++...|.++ +|+.+.+.. .++.+...+|.++.+|+.++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34444444432 333334444443 4555554443 33 4444444442 355555443 33334444445555555555
Q ss_pred cccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC-
Q 043235 116 LDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI- 194 (515)
Q Consensus 116 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~- 194 (515)
+.+|+++.+...+|. ..+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.....+|.. .+|+.+.+.+ .+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence 554444433333333 344555554422 33333444444555555555443 23233333443 4455554422 221
Q ss_pred ----CcCCCCcccEEEcccCcee-----eeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCC
Q 043235 195 ----SLSNLSFVKHIYLQNNAIK-----GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIP 265 (515)
Q Consensus 195 ----~l~~l~~L~~L~L~~n~i~-----~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 265 (515)
.+..+++|+.+.+.+|.+. .+.+.+|.+|++|+.+++.+ .++.+...+|.++++|+.+.|..+ ++.+..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 2224445555555544433 45556666777777777763 355555666666777777777544 554555
Q ss_pred ccccCCCCCCEEECCCCcCcCCCCccccCC
Q 043235 266 NQLCQLRKLSIMDLSRNRLNGPIPSCLGNV 295 (515)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l 295 (515)
.+|..+ +|+.+++++|.+....+..|.++
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 666666 67777777766655445555554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=6.8e-17 Score=142.97 Aligned_cols=115 Identities=23% Similarity=0.337 Sum_probs=104.9
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEe
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFN 439 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 439 (515)
.++|++|++++|+++ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 457899999999998 7778999999999999999999988889999999999999999999988888999999999999
Q ss_pred cccCcccccCCC-CcccCCCCcccccCCCCCCCCccC
Q 043235 440 VSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 440 Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
|++|++++..+. ...+..++.+.+.+|||.|+|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999977665 567889999999999999998754
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=5.3e-16 Score=153.63 Aligned_cols=313 Identities=8% Similarity=0.023 Sum_probs=163.9
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCCh
Q 043235 48 FEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127 (515)
Q Consensus 48 i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 127 (515)
++.+...+|.++.+|+.+.+..+ ++ .+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 44445556666666666666533 55 566666666666666666543 44444555666666666555433 3323444
Q ss_pred hhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC-----CcCCCCcc
Q 043235 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI-----SLSNLSFV 202 (515)
Q Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~l~~l~~L 202 (515)
+|..+..++...... .......+|.++.+|+.+.+.++... .....|..+.+|+.+++..+ +. .+..+..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 444443222222111 11122345555666666666544322 34445556666666665544 21 22244455
Q ss_pred cEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCC
Q 043235 203 KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 203 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 282 (515)
+.+.+..+... . ...+..+..|+.+.+... ++.+....|..+..++.+.+..+... .....|..+..++.+....+
T Consensus 211 ~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 55555444322 1 223334456666666543 23344455666677777777665443 55566666777776665544
Q ss_pred cCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccccccccccc
Q 043235 283 RLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNY 362 (515)
Q Consensus 283 ~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (515)
.+.. .++. .+.+
T Consensus 287 ~i~~---~~F~-----------------------------------------------------------------~~~~ 298 (394)
T 4fs7_A 287 IVPE---KTFY-----------------------------------------------------------------GCSS 298 (394)
T ss_dssp EECT---TTTT-----------------------------------------------------------------TCTT
T ss_pred eecc---cccc-----------------------------------------------------------------cccc
Confidence 3211 1111 1344
Q ss_pred CCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEeccc
Q 043235 363 MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSY 442 (515)
Q Consensus 363 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 442 (515)
|+.+.+.++ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++++|+.+++..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 555555443 33344455666666666666543 55455566666666666666655 5545556666666666666654
Q ss_pred C
Q 043235 443 N 443 (515)
Q Consensus 443 N 443 (515)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 3
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=6.6e-16 Score=152.35 Aligned_cols=261 Identities=9% Similarity=0.104 Sum_probs=190.6
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+..++.+.+.+ .++ .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 35566666654 355 5565555543 6888887766 665666777774 588888775 566 677777777888888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
+++++|+++......|. +.+|+.+.+..+ ++.+...+|..+++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88887777766666666 577888888744 66566777777888888888764 44455556666 678888874 445
Q ss_pred cccccccccCCCCCcEEeCCCCCCC----------CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCc
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSLI----------SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l~----------~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 239 (515)
+.....+|.++++|+.+++.+|.+. .+..+++|+.+.+. +.++.+...+|.+|.+|+.+++..+ ++.+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5556677788888888887776543 34467788888888 4588888889999999999999665 6667
Q ss_pred CchhhhcCCCcCEEEccCccCCCCCCccccCCC-CCCEEECCCCcCc
Q 043235 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR-KLSIMDLSRNRLN 285 (515)
Q Consensus 240 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~ 285 (515)
...+|.++ +|+.+++.+|.+.......|..++ +++.|.+..+.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 78889999 999999999998877778888874 7889998887654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=9.6e-17 Score=138.90 Aligned_cols=132 Identities=20% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCCccEEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 10 YDKLRHLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.++|++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCC
Confidence 344555555555554 344443332 44555555555555432 4445555555555555555422322 223345555
Q ss_pred EEEccCccccccCC-ccccCCCCCCEEEcccCCCCCcCC---hhhhCCCCCcEEEcccCcC
Q 043235 89 WLDLSNNNFYGQLF-PNYMNLTDLGSLYLDNNHFSGKMT---DGLLSSTLLRVLNVSNNML 145 (515)
Q Consensus 89 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l 145 (515)
+|++++|.+++... ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55555555443211 334444444444444444443222 2344444444444444443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=4.4e-18 Score=180.96 Aligned_cols=191 Identities=20% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEE-----ECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYL-----DMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L-----~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
++++.|++.+|.+. ..+..+.. ...|+.+ +++.|.+. ..+..+..+++|+.|+|++|.+. .+|..++ .++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCC
T ss_pred CccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCC
Confidence 45777888888776 44443332 1122222 22233333 44667777888888888888887 7777765 577
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEcc
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (515)
+|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 8888888888877 56677777888888888888877 55777777788888888888776 556667777888888888
Q ss_pred CccccccccccccCCCC-CcEEeCCCCCCCCcCCCCcccEEEcccC
Q 043235 166 ENYLQGNIPVQLNNLKS-LEFIDLSENSLISLSNLSFVKHIYLQNN 210 (515)
Q Consensus 166 ~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~l~~l~~L~~L~L~~n 210 (515)
+|.+++.+|..+..+.. ...+++++|.+.. .....++.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-PLPHERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccC-cCccccceeEeecc
Confidence 88877766665543211 1224455554421 12233444444444
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=140.84 Aligned_cols=127 Identities=24% Similarity=0.257 Sum_probs=92.8
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+++++++|.++ .+|..+ +++|++|++++|.++ .+|..|.++++|++|+|++|.++ .++...|.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 57788888877 777654 357788888888777 56677777788888888888777 6666666777777777777
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCC
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
+|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777666666777777777777777777655556666777777777777664
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=8.8e-17 Score=139.13 Aligned_cols=133 Identities=20% Similarity=0.135 Sum_probs=80.8
Q ss_pred ccCCcEEECcCCccc-ccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 35 FQKLIYLDMSKNNFE-GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
+++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 455666666777777777777766 34 22455666666666666666545555555666666
Q ss_pred EEcccCCCCCcC-ChhhhCCCCCcEEEcccCcCCCCcC---hhccCCCCccEEEccCcccc
Q 043235 114 LYLDNNHFSGKM-TDGLLSSTLLRVLNVSNNMLSGDIP---HWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 114 L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 170 (515)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666665432 1455566666666666666654333 35555666666666666554
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.7e-17 Score=176.38 Aligned_cols=120 Identities=23% Similarity=0.216 Sum_probs=40.2
Q ss_pred CCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC--------------cCCCCcccEEEcccCceeeeccccccC
Q 043235 157 SVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS--------------LSNLSFVKHIYLQNNAIKGLIPIALLR 222 (515)
Q Consensus 157 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--------------l~~l~~L~~L~L~~n~i~~~~~~~~~~ 222 (515)
+.++.|++.+|.+... +.. .++.++|+.|.+.. +..+..|+.|+|++|.+..+ +..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-SANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCC-CGGGGG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCC-ChhhcC
Confidence 4567777877777642 322 23344444443322 12334445555555554432 223334
Q ss_pred CCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCc
Q 043235 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 223 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence 445555555555544 34444444555555555555554 33444444555555555555443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.6e-16 Score=136.48 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=108.3
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.+.+++++++++ .+|..+ +++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 478889999888 778655 468999999999988777777888899999999999988 777777788888999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcC
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP 150 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 150 (515)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9988887766677888888888888888886666667778888888888888876544
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.7e-16 Score=134.41 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=45.8
Q ss_pred cCCcEEECcCCccc-ccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 36 QKLIYLDMSKNNFE-GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 36 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555554 344444444555555555555444 22 112344444444444444443333333334444444
Q ss_pred EcccCCCCCc-CChhhhCCCCCcEEEcccCcCC
Q 043235 115 YLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 115 ~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
++++|++++. .+..+..+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 4444444321 1133333444444444444443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.7e-16 Score=132.28 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=112.6
Q ss_pred CCCCCccEEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 8 AKYDKLRHLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+++++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~ 89 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPN 89 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTT
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCC
Confidence 45688999999999998 688876655 79999999999999965 7899999999999999999944554 4577999
Q ss_pred CCEEEccCcccccc-CCccccCCCCCCEEEcccCCCCCcCC---hhhhCCCCCcEEEccc
Q 043235 87 LDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMT---DGLLSSTLLRVLNVSN 142 (515)
Q Consensus 87 L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~ 142 (515)
|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999864 34789999999999999999997665 5788899999998863
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.5e-14 Score=143.25 Aligned_cols=330 Identities=11% Similarity=0.071 Sum_probs=250.5
Q ss_pred CCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc
Q 043235 26 KLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY 105 (515)
Q Consensus 26 ~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 105 (515)
.+....|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++ .++...|.++.+|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 466666766889999999854 77677889999999999999865 66 788888999999999888755 555666778
Q ss_pred cCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcE
Q 043235 106 MNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185 (515)
Q Consensus 106 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 185 (515)
.++..++...... +......+|..+.+|+.+.+.++. .......|.++.+|+.+.+..+ ++.....+|..+..|+.
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 7776544443333 333556789999999999998654 3356678999999999999877 55466678899999999
Q ss_pred EeCCCCCCC---CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCC
Q 043235 186 IDLSENSLI---SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 186 L~L~~n~l~---~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
+.+..+... .......|+.+.+... ++.+...+|..+..++.+.+..+... +....|..+..++.+....+.+.
T Consensus 213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 213 MEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred eecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence 988776541 1224567888888653 45566778999999999999887553 66778899999999988876543
Q ss_pred CCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCcccccccccccc
Q 043235 263 RIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQV 342 (515)
Q Consensus 263 ~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
...|..+.+|+.+.+..+ ++.....+|.
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~------------------------------------------------- 317 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFE------------------------------------------------- 317 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTT-------------------------------------------------
T ss_pred --cccccccccccccccccc-cceechhhhc-------------------------------------------------
Confidence 357888999999998765 3322222332
Q ss_pred ceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccc
Q 043235 343 GAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
.+.+|+.+++.++ ++.....+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +.
T Consensus 318 ----------------~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~ 378 (394)
T 4fs7_A 318 ----------------SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE 378 (394)
T ss_dssp ----------------TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG
T ss_pred ----------------CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE
Confidence 2567888888654 66566788999999999999887 77678889999999999999765 33
Q ss_pred ccCCccccCCCCCCEE
Q 043235 423 GQIPPQLTELNFLSNF 438 (515)
Q Consensus 423 ~~~~~~l~~l~~L~~L 438 (515)
.+...|.++++|+.+
T Consensus 379 -~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 -QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -GGGGGBCTTCEEEEE
T ss_pred -EhhheecCCCCCcEE
Confidence 345678888888765
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.2e-15 Score=130.46 Aligned_cols=130 Identities=20% Similarity=0.220 Sum_probs=76.3
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
.+.++++++.++ .+|..+ .++|++|++++|+++ .++...+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456666666666 334332 246666666666666 5555555566666666666666665544455666666666666
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 666665555555556666666666666654444445555666666666665553
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.7e-15 Score=132.04 Aligned_cols=133 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
+..+.+|++|++++|+++ .+|. +....++|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 445677788888888777 5554 444344788888888877754 56777777888888888777 666666667777
Q ss_pred CCEEEccCccccccCCc--cccCCCCCCEEEcccCCCCCcCCh----hhhCCCCCcEEEcccCcCC
Q 043235 87 LDWLDLSNNNFYGQLFP--NYMNLTDLGSLYLDNNHFSGKMTD----GLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~ 146 (515)
|++|++++|.++. .+. .+..+++|++|++++|.++. .+. .+..+++|++|++++|.+.
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777753 333 56666677777777776653 333 2555666666666665543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.1e-15 Score=129.59 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=68.7
Q ss_pred ccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC
Q 043235 56 VGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL 135 (515)
Q Consensus 56 ~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 135 (515)
+.++.+|++|++++|.++ .++. +....++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 444555555555555555 4432 222223555555555555543 445555556666666665554433444555566
Q ss_pred cEEEcccCcCCCCcCh--hccCCCCccEEEccCccccccccc----cccCCCCCcEEeCCCCCC
Q 043235 136 RVLNVSNNMLSGDIPH--WIGNFSVLSVLLMSENYLQGNIPV----QLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 136 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 193 (515)
++|++++|.++ .+|. .+..+++|+.|++++|.+.. .|. .+..+++|+.||+++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666554 2333 45555566666666666552 233 245555555555555543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=5e-17 Score=144.75 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=113.4
Q ss_pred cCCCCccEEeccCCccCCcCch------hhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccC
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPH------QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~ 294 (515)
.....++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-- 89 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-- 89 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--
Confidence 3344566666666666655554 78888888888888888885 55 7788888888888888876 233221
Q ss_pred CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCc
Q 043235 295 VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS 374 (515)
Q Consensus 295 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 374 (515)
..+++|++|++++|+++
T Consensus 90 ---------------------------------------------------------------~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 90 ---------------------------------------------------------------AVADTLEELWISYNQIA 106 (198)
T ss_dssp ---------------------------------------------------------------HHHHHCSEEEEEEEECC
T ss_pred ---------------------------------------------------------------hcCCcCCEEECcCCcCC
Confidence 12577888888888888
Q ss_pred cccccchhccccCCeeccCCccccccCh-hhhcCccCCCeeeCCCCcccccCCcc----------ccCCCCCCEEecccC
Q 043235 375 GEIPWKIGQLQNIRALNLSNNLLSGAIP-ESFSNLKMIESLDLSRNKLSGQIPPQ----------LTELNFLSNFNVSYN 443 (515)
Q Consensus 375 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~Ls~N 443 (515)
+ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|
T Consensus 107 ~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~ 182 (198)
T 1ds9_A 107 S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GM 182 (198)
T ss_dssp C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CG
T ss_pred c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cc
Confidence 5 44 57888889999999998885433 47888888999999999887665542 77888888886 66
Q ss_pred cccc
Q 043235 444 NLSG 447 (515)
Q Consensus 444 ~l~~ 447 (515)
+++.
T Consensus 183 ~i~~ 186 (198)
T 1ds9_A 183 PVDV 186 (198)
T ss_dssp GGTT
T ss_pred ccCH
Confidence 6654
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=8.3e-13 Score=130.64 Aligned_cols=321 Identities=9% Similarity=0.099 Sum_probs=149.0
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCc---CcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN---FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++ .+....|.++.+|+.+.+..+ ++.....+|.++.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 555555543 444555556666666666655442 44 455555555556655555433 333444455555666666
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
.+..+ +..+...+|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+-.. ....+|..+..++......+...
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 55433 22244445555555666555443 22222333332 34555555443322 33344555555555554443332
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
...... ...+.........+.....+..+.+... ++.+...+|..+..|+.+.+..+... ....+|..+++|
T Consensus 219 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L 290 (394)
T 4gt6_A 219 AIDNVL------YEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL 290 (394)
T ss_dssp BSSSCE------EEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred ccccee------ecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCccccccccc
Confidence 221100 0000000000001112223333333221 22233445555566666665544332 444555566666
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
+.+.+.. .++.....+|.
T Consensus 291 ~~i~l~~-~i~~I~~~aF~------------------------------------------------------------- 308 (394)
T 4gt6_A 291 QDIEFSS-RITELPESVFA------------------------------------------------------------- 308 (394)
T ss_dssp CEEECCT-TCCEECTTTTT-------------------------------------------------------------
T ss_pred ccccCCC-cccccCceeec-------------------------------------------------------------
Confidence 6665532 22211111221
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCC
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 434 (515)
.+.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+.....
T Consensus 309 ----~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~ 379 (394)
T 4gt6_A 309 ----GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG 379 (394)
T ss_dssp ----TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC
T ss_pred ----CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC
Confidence 2445555666543 44344556777777777777544 555566677777777777777765442 34556666
Q ss_pred CCEEecccCc
Q 043235 435 LSNFNVSYNN 444 (515)
Q Consensus 435 L~~L~Ls~N~ 444 (515)
|+.+.+..|.
T Consensus 380 L~~i~i~~~~ 389 (394)
T 4gt6_A 380 LQNLPVAPGS 389 (394)
T ss_dssp C---------
T ss_pred CCEEEeCCCC
Confidence 7776665554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=3e-14 Score=123.18 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=87.1
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
..+.+++++|.++ .+|..+ .++|++|+|++|.|++..|..|.++++|++|+|++|+++ .+|...|..+++|++|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEE
Confidence 3578889988888 788765 468888999998888777888888888888888888888 77777777888888888
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCC
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 123 (515)
|++|++++..+..|..+++|++|++++|.+..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88888887666667888888888888887764
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=2.5e-14 Score=123.61 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEeccc
Q 043235 363 MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSY 442 (515)
Q Consensus 363 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 442 (515)
.+++++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456677777776 3454442 5677777777777766666677777777777777777755555666777777777777
Q ss_pred CcccccCCC-CcccCCCCcccccCCCCCCCCc
Q 043235 443 NNLSGPIPD-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 443 N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
|++++..|. ...+..++.+.+.+|++.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777665554 4456666777777777777664
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=5.7e-14 Score=121.81 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=86.9
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.+++++|+++ .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|..+|..+++|++|+|
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEEC
Confidence 368899999887 788766 368899999999988877888888899999999999888 788777778888888888
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCC
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 123 (515)
++|+++...+..|..+++|++|++++|.+..
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8888886665567788888888888888763
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=2.7e-12 Score=126.96 Aligned_cols=332 Identities=9% Similarity=0.066 Sum_probs=226.0
Q ss_pred CCCCCCCC-CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCc---ccccCCccccCCCCCCEEECcCCcCcccCchH
Q 043235 4 RLPNAKYD-KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNN---FEGNIPYSVGEMKELTILDLSRNNFTGKLPRP 79 (515)
Q Consensus 4 ~~~~~~~~-~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~ 79 (515)
.-+|..++ .|+.+.+..+ ++ .+.+..|..+.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++ .++..
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~ 131 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSE 131 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTT
T ss_pred HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhh
Confidence 44566775 5999999754 76 7777777778999999998764 66677789999999999988765 65 78888
Q ss_pred HHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 80 IVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 80 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
.|..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.+...+|.. ..|+.+.+..+-.. ....+|..+.++
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccc
Confidence 8899999999999754 44566778999999999999865 45455666654 67999998765433 556678888888
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCc
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 239 (515)
+......+.........+........... .......+..+.+. +.++.+...+|.++..|+.+.+.++.. .+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I 279 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALI------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SI 279 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEE------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EE
T ss_pred ceecccccccccccceeeccccccccccc------ccccccccceEEcC-CcceEcccceeeecccccEEecccccc-ee
Confidence 88877665544211111111111111100 11122233444443 345666677899999999999987654 36
Q ss_pred CchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCc
Q 043235 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPV 319 (515)
Q Consensus 240 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 319 (515)
...+|.++++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.....+|.
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-------------------------- 331 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA-------------------------- 331 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--------------------------
T ss_pred cCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh--------------------------
Confidence 67788899999999996 4566677788999999999998754 3322222332
Q ss_pred cccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccc
Q 043235 320 AYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG 399 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 399 (515)
.+.+|+.+.+..+ ++.+...+|.++.+|+.+++.++...
T Consensus 332 ---------------------------------------~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~- 370 (394)
T 4gt6_A 332 ---------------------------------------GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ- 370 (394)
T ss_dssp ---------------------------------------TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-
T ss_pred ---------------------------------------CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-
Confidence 2667788888654 66566778999999999999988654
Q ss_pred cChhhhcCccCCCeeeCCCCccc
Q 043235 400 AIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 400 ~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
..++....+|+.+.+..+.+.
T Consensus 371 --~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 371 --WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp --HHTCBCCCCC-----------
T ss_pred --hhhhhccCCCCEEEeCCCCEE
Confidence 256778888999988877653
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.5e-16 Score=140.18 Aligned_cols=146 Identities=24% Similarity=0.287 Sum_probs=75.8
Q ss_pred cCCcEEECcCCcccccCCc------cccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCC
Q 043235 36 QKLIYLDMSKNNFEGNIPY------SVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLT 109 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 109 (515)
..++.++++.+.+.+..|. .+..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444444444444444443 4555555555555555555 344 2344555555555555554 2334444455
Q ss_pred CCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcC-hhccCCCCccEEEccCccccccccc----------ccc
Q 043235 110 DLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQGNIPV----------QLN 178 (515)
Q Consensus 110 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~l~ 178 (515)
+|++|++++|++++. + .+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.+..|. .+.
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 555555555555532 2 35555556666666666553221 3455566666666666665544332 245
Q ss_pred CCCCCcEEe
Q 043235 179 NLKSLEFID 187 (515)
Q Consensus 179 ~l~~L~~L~ 187 (515)
.+++|+.||
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 556666555
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=6.4e-14 Score=121.48 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=56.1
Q ss_pred CEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 364 AGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 364 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3443332 45555555555555555555555555555555555555444444555555555555555
Q ss_pred cccccCCC-CcccCCCCcccccCCCCCCCC
Q 043235 444 NLSGPIPD-KEQFATFDDCSYKGNSALCGS 472 (515)
Q Consensus 444 ~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~ 472 (515)
++++..+. ...+..++.+.+.+|++.|.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 55544443 334555555555555555544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=3.7e-14 Score=138.50 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=88.6
Q ss_pred ccCCcEEECcCCcccccCCcccc-----CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc----
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVG-----EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY---- 105 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---- 105 (515)
.++|++|+|++|.++......+. ..++|++|+|++|.++......+...+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35666666666666543332222 225666666666666532223333344566666666666654333333
Q ss_pred -cCCCCCCEEEcccCCCCCc----CChhhhCCCCCcEEEcccCcCCCCc----ChhccCCCCccEEEccCcccccc----
Q 043235 106 -MNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNNMLSGDI----PHWIGNFSVLSVLLMSENYLQGN---- 172 (515)
Q Consensus 106 -~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~---- 172 (515)
...++|++|+|++|.++.. ++..+...++|++|++++|.++... +..+...++|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345666777776666532 2233455666777777777665322 33455566677777777776643
Q ss_pred ccccccCCCCCcEEeCCCCCCC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
+...+...++|++|+|++|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 2233445567777777777763
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=2.1e-14 Score=140.15 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=116.7
Q ss_pred CCCCCEEECcCCcCcccCchHHHh-----CCCCCCEEEccCccccccCCccc-cCCCCCCEEEcccCCCCCcCChhh---
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVS-----SCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSLYLDNNHFSGKMTDGL--- 129 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~-----~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~--- 129 (515)
++.|++|+|++|.++ ......+. ...+|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899999999987 32222222 23689999999999875433333 346789999999999875444444
Q ss_pred --hCCCCCcEEEcccCcCCCC----cChhccCCCCccEEEccCccccccc----cccccCCCCCcEEeCCCCCCCCc---
Q 043235 130 --LSSTLLRVLNVSNNMLSGD----IPHWIGNFSVLSVLLMSENYLQGNI----PVQLNNLKSLEFIDLSENSLISL--- 196 (515)
Q Consensus 130 --~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~l--- 196 (515)
...++|++|++++|.++.. ++..+...++|++|++++|.+.+.. +..+...++|+.|+|++|.+...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2467899999999988642 3344577889999999999987532 45567778999999999998542
Q ss_pred ------CCCCcccEEEcccCceeeeccccc
Q 043235 197 ------SNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 197 ------~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
...+.|++|+|++|.|++.....+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 245789999999999876544444
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=9.8e-13 Score=127.84 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred EEcCCC-cCccccccchhccccCCeeccCC-ccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 366 LDLSGN-EFSGEIPWKIGQLQNIRALNLSN-NLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 366 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455665 565 3555 66666666666664 6666555566666666666666666666666666666666666666666
Q ss_pred cccccCCCCcccCCCCcccccCCCCCCCCc
Q 043235 444 NLSGPIPDKEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 444 ~l~~~~p~~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
+|++..|.......++.+.+.+|++.|.|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 666554443322236666666666666654
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.29 E-value=8.2e-10 Score=108.47 Aligned_cols=313 Identities=8% Similarity=-0.010 Sum_probs=181.6
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
..+|+.+.+... ++.+...+|.++.+|+.+++..+ ++ .+...+|.++ +|+.+.+..+ ++.....+|... +|+.+
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 456777777654 55566677888888888888644 65 6777777766 5777766543 444444555543 67777
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
.+..+- +.....+|... +++.+.+..+ ++......|..+..++...+..+.........+. ........ .
T Consensus 119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~ 188 (379)
T 4h09_A 119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNKTIL------E 188 (379)
T ss_dssp ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTSSEE------E
T ss_pred cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccccccee------c
Confidence 776542 22333444433 4555554433 3323344555666666665554332211100000 00000000 0
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
.+.....+..+.+... ........+..+..|+.+.+..+ +..+....|..+..|+.+.+..+ ++.+...+|..+.+|
T Consensus 189 ~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 1112233334433332 22334556667777887777655 33355566777788888888765 555666777788888
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
+.+.+..+ +......+|
T Consensus 266 ~~i~l~~~-i~~i~~~aF-------------------------------------------------------------- 282 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLC-------------------------------------------------------------- 282 (379)
T ss_dssp CEEEECCC-CSEECTTTT--------------------------------------------------------------
T ss_pred cccccccc-ceecccccc--------------------------------------------------------------
Confidence 88877543 221111111
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCC
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 434 (515)
..+.+|+.+++.++.++.....+|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.++..
T Consensus 283 ---~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 283 ---SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp ---TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ---ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 22567777888777777666777888888888888754 66566778888888888888655 55555667776643
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=5.5e-10 Score=109.76 Aligned_cols=303 Identities=11% Similarity=0.042 Sum_probs=206.3
Q ss_pred cccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCC
Q 043235 55 SVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTL 134 (515)
Q Consensus 55 ~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 134 (515)
++....+|+.+.+... ++ .++..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 4566778999998754 66 788888999999999999754 666777788887 6888877654 55455556655 47
Q ss_pred CcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceee
Q 043235 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 135 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~ 214 (515)
|+.+.+..+ +.......|... +++.+.+..+ ++......|..+..++.+.+..+........ ........
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~--- 184 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN----YVLYNKNK--- 184 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET----TEEEETTS---
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc----ceeccccc---
Confidence 999988765 332334445443 5666665543 3334456677777887777765543211100 00000111
Q ss_pred eccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccC
Q 043235 215 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294 (515)
Q Consensus 215 ~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~ 294 (515)
.....+..+..+..+.+..... ......+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++.....++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~- 260 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ- 260 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT-
T ss_pred ceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc-
Confidence 1123455666777777765543 355667788889999998765 44466778889999999998765 3322222222
Q ss_pred CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCc
Q 043235 295 VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS 374 (515)
Q Consensus 295 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 374 (515)
.+.+|+.+.+..+ +.
T Consensus 261 ----------------------------------------------------------------~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 261 ----------------------------------------------------------------NCTALKTLNFYAK-VK 275 (379)
T ss_dssp ----------------------------------------------------------------TCTTCCEEEECCC-CS
T ss_pred ----------------------------------------------------------------eeehhcccccccc-ce
Confidence 2456777777544 55
Q ss_pred cccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 375 GEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 375 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
......|.++.+|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+-..+|.++.+|+.+.+..+
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 456677999999999999999998788899999999999999865 66667788999999999987543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.8e-11 Score=115.85 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=56.0
Q ss_pred EEeCcCC-cCCCCCchhHHhcccCCcEEECcC-CcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 15 HLDISSN-NFSGKLPENLGIIFQKLIYLDMSK-NNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 15 ~L~ls~n-~l~~~~p~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.++++++ +++ .+|. +.. +++|++|+|++ |.+++..+..|.++++|++|+|++|+++ .++...|..+++|++|+|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeC
Confidence 3456655 555 4555 433 45566666664 6666555555666666666666666665 344444455566666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCC
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFS 122 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 122 (515)
++|++++..+..|..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66655544433444333 555555555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=5.2e-10 Score=108.18 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=98.1
Q ss_pred ccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCcccc--CCCCCCEEECCCC--cCcCCCCcccc
Q 043235 218 IALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC--QLRKLSIMDLSRN--RLNGPIPSCLG 293 (515)
Q Consensus 218 ~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n--~i~~~~p~~~~ 293 (515)
..+..+++|+.|++++|.-. ..+. + .+++|++|+|..|.+.......+. .+++|++|+|+.+ ...+.. .+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH
Confidence 44566778888888777311 1222 3 367888888888877643333343 6788888887532 111100 000
Q ss_pred CCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcC
Q 043235 294 NVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEF 373 (515)
Q Consensus 294 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 373 (515)
.+. ..+.+..+++|++|+|++|.+
T Consensus 241 ~l~--------------------------------------------------------~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 241 VFR--------------------------------------------------------PLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp GTG--------------------------------------------------------GGSCTTTCTTCCEEEEESCTT
T ss_pred HHH--------------------------------------------------------HHHhcCCCCCcCEEeCCCCCC
Confidence 000 000112367888899988888
Q ss_pred ccccccchh---ccccCCeeccCCccccccC----hhhhcCccCCCeeeCCCCcccccCCccccC-CCCCCEEecccCc
Q 043235 374 SGEIPWKIG---QLQNIRALNLSNNLLSGAI----PESFSNLKMIESLDLSRNKLSGQIPPQLTE-LNFLSNFNVSYNN 444 (515)
Q Consensus 374 ~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~Ls~N~ 444 (515)
.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.|+...-..+.. + ...+++++++
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 754433332 4778888888888887543 333456788888888888887544333433 2 3567777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.2e-09 Score=105.51 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=46.9
Q ss_pred CCcccEEEcccCceeeecccccc---CCCCccEEeccCCccCCcC----chhhhcCCCcCEEEccCccCCCCCCccccC-
Q 043235 199 LSFVKHIYLQNNAIKGLIPIALL---RSSTLLTLDLRDNKLFGRI----PHQINERSNLHVLLLRGNYLQGRIPNQLCQ- 270 (515)
Q Consensus 199 l~~L~~L~L~~n~i~~~~~~~~~---~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~- 270 (515)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 56677777776666543222222 3567777777777776432 223344577777777777766443333332
Q ss_pred CCCCCEEECCCCc
Q 043235 271 LRKLSIMDLSRNR 283 (515)
Q Consensus 271 l~~L~~L~L~~n~ 283 (515)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456666665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=9.2e-09 Score=89.71 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=23.3
Q ss_pred hhhhcCCCcCEEEccCc-cCCCC----CCccccCCCCCCEEECCCCcCc
Q 043235 242 HQINERSNLHVLLLRGN-YLQGR----IPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
..+...++|++|+|++| .+.+. +...+...++|++|+|++|.|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34445566666666666 55532 1233444555666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=3.2e-08 Score=86.22 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=58.6
Q ss_pred CccccCCCCCCEEECcCC-cCcccCc---hHHHhCCCCCCEEEccCccccccC----CccccCCCCCCEEEcccCCCCCc
Q 043235 53 PYSVGEMKELTILDLSRN-NFTGKLP---RPIVSSCLSLDWLDLSNNNFYGQL----FPNYMNLTDLGSLYLDNNHFSGK 124 (515)
Q Consensus 53 ~~~~~~l~~L~~L~L~~n-~l~~~l~---~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~ 124 (515)
...+...+.|++|+|++| .+...-. ...+...++|++|+|++|.|.... ...+...+.|++|+|++|.|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344566777777777777 6652111 112244566777777777665322 22233445566666666665532
Q ss_pred ----CChhhhCCCCCcEEEc--ccCcCCCCc----ChhccCCCCccEEEccCccc
Q 043235 125 ----MTDGLLSSTLLRVLNV--SNNMLSGDI----PHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 125 ----~~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l 169 (515)
+..++...+.|++|++ ++|.++... ...+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2233444455555555 455554221 12223334455555554444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=1.8e-07 Score=85.66 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=38.0
Q ss_pred hccccCCeeccCCcccccc--ChhhhcCccCCCeeeCCCCcccccCCccccCCC--CCCEEecccCcccccCC
Q 043235 382 GQLQNIRALNLSNNLLSGA--IPESFSNLKMIESLDLSRNKLSGQIPPQLTELN--FLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 382 ~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~p 450 (515)
..+++|+.|+|++|+|++. ++..+..+++|+.|+|++|+|++. ..+..+. .|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3455666666666666542 334555666666666666666643 2223333 66666666666666555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=8.5e-07 Score=81.19 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=68.8
Q ss_pred EeCcCCcCCCCCchh---HHhcccCCcEEECcCCcccc--cCCccccCCCCCCEEECcCCcCcccCchHHHhCCC--CCC
Q 043235 16 LDISSNNFSGKLPEN---LGIIFQKLIYLDMSKNNFEG--NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL--SLD 88 (515)
Q Consensus 16 L~ls~n~l~~~~p~~---~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~--~L~ 88 (515)
++++.|... .++.. +...+++|++|+|++|.|++ .++..+..+++|++|+|++|+++ .+.. +..+. +|+
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~--l~~l~~l~L~ 223 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERE--LDKIKGLKLE 223 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGG--GGGGTTSCCS
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cchh--hhhcccCCcc
Confidence 667777543 33332 22337899999999999986 34566778999999999999998 4421 23344 899
Q ss_pred EEEccCccccccCC-------ccccCCCCCCEEEc
Q 043235 89 WLDLSNNNFYGQLF-------PNYMNLTDLGSLYL 116 (515)
Q Consensus 89 ~L~L~~n~i~~~~~-------~~~~~l~~L~~L~L 116 (515)
+|+|++|.+.+..+ ..+..+++|+.||-
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99999999876444 23677899988863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=1.2e-07 Score=80.57 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=71.2
Q ss_pred ccCCEEEcCCCcCccccccchhccccCCeeccCCcc-ccccChhhhcCc----cCCCeeeCCCCc-ccccCCccccCCCC
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNL-LSGAIPESFSNL----KMIESLDLSRNK-LSGQIPPQLTELNF 434 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~ 434 (515)
..|++||+++|.+++.....+..+++|++|+|++|. |++..-..+..+ ++|++|+|++|. |++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368999999999998777778899999999999995 776666667765 479999999985 88665567888999
Q ss_pred CCEEecccCc
Q 043235 435 LSNFNVSYNN 444 (515)
Q Consensus 435 L~~L~Ls~N~ 444 (515)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=5.5e-07 Score=76.41 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=46.1
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCc-CcccCchHHHhCC----CCCCEEEccCcc-ccccCCccccCCCC
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSC----LSLDWLDLSNNN-FYGQLFPNYMNLTD 110 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~ 110 (515)
+|++||+++|.|++..-..+.++++|++|+|++|. +++.--.. +..+ ++|++|++++|. |++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56777777766665555556666777777777663 44211111 2222 356666666653 55444444555566
Q ss_pred CCEEEcccCC
Q 043235 111 LGSLYLDNNH 120 (515)
Q Consensus 111 L~~L~L~~n~ 120 (515)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.45 E-value=0.00016 Score=58.29 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=37.2
Q ss_pred CeeccCCcccc-ccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccc
Q 043235 388 RALNLSNNLLS-GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446 (515)
Q Consensus 388 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 446 (515)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 23443322 35777888888887666666777777777766666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=0.00021 Score=61.72 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=32.1
Q ss_pred ccCCCCCCEEECcCC-cCccc----CchHHHhCCCCCCEEEccCccccccCCcc----ccCCCCCCEEEcccCCCC
Q 043235 56 VGEMKELTILDLSRN-NFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQLFPN----YMNLTDLGSLYLDNNHFS 122 (515)
Q Consensus 56 ~~~l~~L~~L~L~~n-~l~~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~i~ 122 (515)
+.+-+.|++|+|++| .|... +-.. +..-+.|++|+|++|.|....... +..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344556666666664 55411 1111 234456666666666665322222 223445555555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=0.00013 Score=63.13 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=49.1
Q ss_pred CcccEEEcccCceeee----ccccccCCCCccEEeccCCccCCcC----chhhhcCCCcCEEEccCc---cCCC----CC
Q 043235 200 SFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLFGRI----PHQINERSNLHVLLLRGN---YLQG----RI 264 (515)
Q Consensus 200 ~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n---~i~~----~~ 264 (515)
+.|+.|+|++|.|.+. +..++...+.|++|+|++|.|.... ...+..-+.|++|+|++| .+.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 3444444445554432 2234445567777888877776432 234445567888888755 3332 12
Q ss_pred CccccCCCCCCEEECCCCcC
Q 043235 265 PNQLCQLRKLSIMDLSRNRL 284 (515)
Q Consensus 265 ~~~~~~l~~L~~L~L~~n~i 284 (515)
...+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 33455667888888887765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.00061 Score=54.90 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=31.3
Q ss_pred EEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcC
Q 043235 15 HLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72 (515)
Q Consensus 15 ~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 72 (515)
.++.+++.++ ..+|..+ .++|++|+|++|.|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666654 2455443 34566666666666655555555666666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.08 E-value=7.6 Score=28.90 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=19.7
Q ss_pred cccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 49 EGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 49 ~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+.+...+|.++..|+.+.+-.+ ++ .+....|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 3334444555555555555433 33 3444444445555544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.03 E-value=7 Score=29.10 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=24.0
Q ss_pred cCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 75 KLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 75 ~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
.+....|.+|.+|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455555666666666666543 3334445566666666665544
Done!