BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043236
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02201|OSH6_YEAST Oxysterol-binding protein homolog 6 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=OSH6 PE=1 SV=1
          Length = 448

 Score = 34.3 bits (77), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 21/128 (16%)

Query: 64  ATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTT 123
           A  + +   SIR++ V I +  FL NSS  ++  +  T+L  + +K+ N    KY  T  
Sbjct: 163 AYFYMIPESSIRVDGVVIPKSRFLGNSS--AAMMDGSTVLQFLDIKDGNGKPEKYVLTQP 220

Query: 124 SIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDI--LSRSLNMSSY 181
           ++Y  G++ G+                 + ++L     +  P+ ++DI   ++     +Y
Sbjct: 221 NVYVRGILFGK-----------------MRIELGDHMIIKSPNFQADIEFKTKGYVFGTY 263

Query: 182 TRIDGKIK 189
             I+G +K
Sbjct: 264 DAIEGTVK 271


>sp|P38755|OSH7_YEAST Oxysterol-binding protein homolog 7 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=OSH7 PE=1 SV=1
          Length = 437

 Score = 33.9 bits (76), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 64  ATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTT 123
           A  + +   +IR++ V + + +FL NSS  ++  E +T+L  + +K+ N    KY  +  
Sbjct: 163 AYFYMIPESNIRVDGVVVPKSKFLGNSS--AAMMEGLTVLQFLDIKDANGKPEKYTLSQP 220

Query: 124 SIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFL--TVPSLKSDILSRSLNMSSY 181
           ++Y  G++ G+  I           +  V ++   + F+  T  +++  I  +  +   Y
Sbjct: 221 NVYARGILFGKMRIELGDHMVIMGPKYQVDIEFKTKGFISGTYDAIEGTI--KDYDGKEY 278

Query: 182 TRIDGKIKLIKVLK 195
            +I GK   I  +K
Sbjct: 279 YQISGKWNDIMYIK 292


>sp|Q9EYG9|SUCC_RHIME Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium
           meliloti (strain 1021) GN=sucC PE=3 SV=1
          Length = 398

 Score = 32.0 bits (71), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 141 QAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVL 200
           +A A  T    VTV ++PEK +T  +LK+  L+ +L +    R D + KL  +L K+ V 
Sbjct: 144 EAVAEHTPEKIVTVAIDPEKGVTAENLKT--LADALKLEGEARADAE-KLFPILYKAFVE 200

Query: 201 K 201
           K
Sbjct: 201 K 201


>sp|A6UDP2|SUCC_SINMW Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sinorhizobium
           medicae (strain WSM419) GN=sucC PE=3 SV=1
          Length = 398

 Score = 31.6 bits (70), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 141 QAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVL 200
           +A A  T    VTV ++P+K +T   LK+  L+ +L +    R D + KL  +L K+ V 
Sbjct: 144 EAVAEHTPEKIVTVAIDPDKGVTADDLKT--LTEALKLDGEARADAE-KLFPILYKAFVE 200

Query: 201 K 201
           K
Sbjct: 201 K 201


>sp|Q1H1G1|TIG_METFK Trigger factor OS=Methylobacillus flagellatus (strain KT / ATCC
           51484 / DSM 6875) GN=tig PE=3 SV=1
          Length = 434

 Score = 30.8 bits (68), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 11/154 (7%)

Query: 64  ATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTT 123
           AT   VK  S + + + I  + ++++  V  + +  + L+     + P + S   GN   
Sbjct: 150 ATFEPVKRASKKGDKINISLIAYIDDQEVERTDENGLDLIIGEGGRFPAFESELSGNKAG 209

Query: 124 SIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTR 183
           S     +   E H P+  A   +T+R +VT   N  +   +P   +D  +RSL +     
Sbjct: 210 SNKVFEIAYPEDHKPEQLAG--KTVRYDVT--FNTVEQAKLPEFDAD-FARSLGVE---- 260

Query: 184 IDGKI-KLIKVLKKSVVLKMNCSIIYNISSQAVQ 216
            DG + K+ + +  S+  ++   I   +  QA Q
Sbjct: 261 -DGDVEKMREEITASLKQEVEKRIRVKLKEQAFQ 293


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,905,777
Number of Sequences: 539616
Number of extensions: 2658562
Number of successful extensions: 7349
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7347
Number of HSP's gapped (non-prelim): 11
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)