Query 043236
Match_columns 222
No_of_seqs 156 out of 742
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 3.9E-57 8.4E-62 379.1 27.2 214 4-222 1-216 (219)
2 PF03168 LEA_2: Late embryogen 99.5 9.4E-14 2E-18 101.8 7.9 98 105-205 1-100 (101)
3 smart00769 WHy Water Stress an 98.8 4.2E-08 9E-13 72.5 9.8 85 96-183 11-97 (100)
4 PF07092 DUF1356: Protein of u 98.5 1.1E-06 2.3E-11 74.2 11.4 91 59-156 90-181 (238)
5 COG5608 LEA14-like dessication 97.8 0.0028 6E-08 50.0 15.1 90 100-193 50-141 (161)
6 PF12751 Vac7: Vacuolar segreg 96.5 0.014 3E-07 52.7 8.5 35 99-133 347-381 (387)
7 PF06072 Herpes_US9: Alphaherp 85.7 0.26 5.6E-06 32.7 0.1 17 36-52 26-42 (60)
8 PF11395 DUF2873: Protein of u 81.6 1.4 3E-05 26.5 2.0 24 48-71 12-36 (43)
9 PF14155 DUF4307: Domain of un 79.5 24 0.00051 26.4 12.6 74 62-154 21-98 (112)
10 PLN03160 uncharacterized prote 74.5 50 0.0011 27.7 13.1 47 35-82 32-82 (219)
11 PF14927 Neurensin: Neurensin 72.1 5.2 0.00011 31.4 3.5 22 52-75 54-75 (140)
12 KOG0810 SNARE protein Syntaxin 64.4 3.1 6.6E-05 36.7 0.9 10 39-48 267-276 (297)
13 PF15339 Afaf: Acrosome format 64.0 3.5 7.6E-05 33.4 1.1 24 2-25 97-121 (200)
14 PF09865 DUF2092: Predicted pe 63.2 68 0.0015 26.9 8.7 38 96-133 35-74 (214)
15 PRK05529 cell division protein 59.5 18 0.00039 31.0 4.8 15 71-85 58-72 (255)
16 PRK10893 lipopolysaccharide ex 58.5 1E+02 0.0022 25.3 11.5 20 68-87 37-56 (192)
17 TIGR02588 conserved hypothetic 58.4 82 0.0018 24.1 7.9 22 61-82 23-44 (122)
18 COG4698 Uncharacterized protei 58.0 4.3 9.2E-05 33.1 0.6 38 42-81 11-48 (197)
19 COG1580 FliL Flagellar basal b 55.5 72 0.0016 25.5 7.3 11 57-67 32-42 (159)
20 PF04478 Mid2: Mid2 like cell 53.9 13 0.00027 29.6 2.6 35 39-73 47-81 (154)
21 PRK12785 fliL flagellar basal 52.0 78 0.0017 25.3 7.1 15 116-130 86-100 (166)
22 PF05399 EVI2A: Ectropic viral 51.3 23 0.00049 29.7 3.8 15 3-17 72-86 (227)
23 PRK05696 fliL flagellar basal 51.0 25 0.00055 28.1 4.1 14 116-129 86-99 (170)
24 PF07787 DUF1625: Protein of u 50.3 15 0.00033 31.2 2.8 14 56-69 235-248 (248)
25 PRK06531 yajC preprotein trans 49.9 12 0.00027 28.2 1.9 15 59-73 12-26 (113)
26 PF12505 DUF3712: Protein of u 49.9 41 0.00089 25.3 4.9 25 100-124 100-124 (125)
27 PF12505 DUF3712: Protein of u 46.3 1E+02 0.0022 23.1 6.6 64 131-198 2-67 (125)
28 PHA03093 EEV glycoprotein; Pro 44.8 10 0.00022 30.9 0.9 24 109-132 97-120 (185)
29 TIGR01478 STEVOR variant surfa 44.5 16 0.00035 32.0 2.0 26 46-71 261-287 (295)
30 PF00927 Transglut_C: Transglu 43.9 1.2E+02 0.0026 21.8 7.1 55 101-155 16-75 (107)
31 PF11906 DUF3426: Protein of u 43.9 1.5E+02 0.0031 22.7 11.0 76 74-155 48-135 (149)
32 PTZ00370 STEVOR; Provisional 43.6 17 0.00036 31.9 2.0 25 46-70 257-282 (296)
33 PHA02673 ORF109 EEV glycoprote 43.2 7.4 0.00016 31.1 -0.2 20 34-53 23-42 (161)
34 KOG3950 Gamma/delta sarcoglyca 42.4 32 0.0007 29.5 3.5 20 96-115 104-124 (292)
35 PF11797 DUF3324: Protein of u 39.6 1.7E+02 0.0038 22.4 11.7 87 71-183 27-115 (140)
36 PF05545 FixQ: Cbb3-type cytoc 39.0 28 0.00061 21.8 2.1 15 57-71 20-34 (49)
37 COG2332 CcmE Cytochrome c-type 38.8 2E+02 0.0043 22.9 8.3 29 109-137 79-109 (153)
38 COG1862 YajC Preprotein transl 38.2 25 0.00054 25.8 2.0 19 54-72 14-32 (97)
39 KOG0811 SNARE protein PEP12/VA 38.0 22 0.00047 31.0 1.9 6 62-67 262-267 (269)
40 PF04790 Sarcoglycan_1: Sarcog 37.6 19 0.00042 31.2 1.5 8 105-112 91-98 (264)
41 PF15018 InaF-motif: TRP-inter 37.4 74 0.0016 19.2 3.6 29 40-68 2-32 (38)
42 cd01324 cbb3_Oxidase_CcoQ Cyto 35.0 42 0.00092 21.2 2.4 13 59-71 23-35 (48)
43 PF04573 SPC22: Signal peptida 34.9 1E+02 0.0022 25.0 5.2 12 66-77 31-42 (175)
44 PRK05886 yajC preprotein trans 33.7 31 0.00068 25.8 1.9 17 57-73 12-28 (109)
45 PF12321 DUF3634: Protein of u 33.0 40 0.00087 25.2 2.4 18 59-76 9-28 (108)
46 PF15145 DUF4577: Domain of un 32.5 96 0.0021 23.4 4.3 7 14-20 34-40 (128)
47 COG4736 CcoQ Cbb3-type cytochr 32.1 49 0.0011 22.1 2.4 13 59-71 22-34 (60)
48 PF11322 DUF3124: Protein of u 31.2 1.9E+02 0.0041 22.2 5.8 51 99-152 22-75 (125)
49 TIGR02908 CoxD_Bacillus cytoch 30.9 52 0.0011 24.7 2.7 10 44-53 28-37 (110)
50 PF07423 DUF1510: Protein of u 30.5 38 0.00082 28.5 2.1 7 63-69 31-37 (217)
51 PF01102 Glycophorin_A: Glycop 30.1 43 0.00092 25.6 2.2 20 59-78 81-101 (122)
52 PF08693 SKG6: Transmembrane a 29.6 50 0.0011 20.2 2.0 12 39-50 8-19 (40)
53 PF11837 DUF3357: Domain of un 28.7 19 0.00041 26.7 0.0 11 39-49 24-34 (106)
54 PF06024 DUF912: Nucleopolyhed 28.6 45 0.00097 24.4 2.0 26 45-70 64-90 (101)
55 TIGR00739 yajC preprotein tran 27.5 55 0.0012 23.1 2.3 16 56-71 10-25 (84)
56 PTZ00382 Variant-specific surf 27.5 30 0.00066 25.1 0.9 12 57-68 82-93 (96)
57 PRK07021 fliL flagellar basal 27.1 3.1E+02 0.0068 21.6 6.9 16 115-130 77-92 (162)
58 PF10830 DUF2553: Protein of u 26.3 1.2E+02 0.0026 21.2 3.6 29 112-140 8-36 (76)
59 PTZ00116 signal peptidase; Pro 26.2 1.9E+02 0.004 23.8 5.4 56 69-129 36-93 (185)
60 PF04415 DUF515: Protein of un 26.1 88 0.0019 29.0 3.8 16 54-69 43-58 (416)
61 COG5353 Uncharacterized protei 25.9 84 0.0018 25.0 3.1 29 41-69 4-33 (161)
62 PF09624 DUF2393: Protein of u 25.8 3.1E+02 0.0066 21.0 9.7 34 101-134 63-96 (149)
63 COG5325 t-SNARE complex subuni 25.2 45 0.00098 29.1 1.7 9 38-46 255-263 (283)
64 PF08113 CoxIIa: Cytochrome c 25.1 76 0.0017 18.6 2.1 8 54-61 14-21 (34)
65 COG3121 FimC P pilus assembly 24.9 1.5E+02 0.0033 25.0 4.8 43 105-152 166-208 (235)
66 PHA03292 envelope glycoprotein 24.6 1.5E+02 0.0032 27.3 4.8 11 9-19 282-292 (413)
67 PF14874 PapD-like: Flagellar- 24.5 2.5E+02 0.0055 19.6 11.5 50 103-155 23-72 (102)
68 TIGR00996 Mtu_fam_mce virulenc 24.0 1.1E+02 0.0023 26.3 3.9 11 125-135 51-61 (291)
69 PF03100 CcmE: CcmE; InterPro 23.9 1.7E+02 0.0037 22.3 4.6 11 119-129 80-90 (131)
70 PRK10807 paraquat-inducible pr 23.1 2.6E+02 0.0057 26.8 6.6 24 62-85 34-57 (547)
71 PRK05585 yajC preprotein trans 23.0 66 0.0014 23.9 2.0 16 56-71 25-40 (106)
72 PF12650 DUF3784: Domain of un 22.3 55 0.0012 23.4 1.5 10 17-26 25-34 (97)
73 PF03302 VSP: Giardia variant- 22.2 54 0.0012 30.0 1.7 17 54-70 380-396 (397)
74 PF05966 Chordopox_A33R: Chord 21.7 31 0.00066 28.4 0.0 21 109-129 101-121 (190)
75 COG1589 FtsQ Cell division sep 21.6 69 0.0015 27.5 2.2 26 58-83 44-69 (269)
76 PF08135 EPV_E5: Major transfo 21.3 74 0.0016 19.6 1.6 15 54-68 18-32 (44)
77 COG3736 VirB8 Type IV secretor 21.0 56 0.0012 27.9 1.5 48 38-86 38-86 (239)
78 COG4068 Uncharacterized protei 20.5 47 0.001 22.1 0.7 7 35-41 36-42 (64)
79 PF09301 DUF1970: Domain of un 20.4 49 0.0011 23.7 0.8 16 56-71 12-27 (117)
80 PF09911 DUF2140: Uncharacteri 20.4 81 0.0018 25.7 2.2 19 54-72 13-31 (187)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=3.9e-57 Score=379.12 Aligned_cols=214 Identities=56% Similarity=0.933 Sum_probs=197.7
Q ss_pred CCCCCCCCcCCCCcCCCCChhhhhhccCCccccccccceeeehhhHHHHH-HHHHHHHHHhhheeecCCCEEEEEEEEEe
Q 043236 4 ANNSEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALL-LVAVVIIIVIATVFHVKNPSIRMNSVTIQ 82 (222)
Q Consensus 4 ~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~~cc~~~~~~l-ll~~i~lil~~lv~rPk~P~~~v~~~~l~ 82 (222)
|+|+||+|||||++++.|||||+ +..+ ++++++|+|++||+|+++++ +|++++++++|++||||+|+|+|++++++
T Consensus 1 ~~~~~~~~p~a~~~~~~~~d~~~--~~~~-~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~ 77 (219)
T PLN03160 1 MAETEQVRPLAPAAFRLRSDEEE--ATNH-LKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVT 77 (219)
T ss_pred CCccccCCCCCCCcccccCchhh--cCcc-hhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEe
Confidence 99999999999999999999998 5444 45567888888999988877 88888999999999999999999999999
Q ss_pred eEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCCeeeccCceEEEEEEEeecccccc
Q 043236 83 RLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFL 162 (222)
Q Consensus 83 ~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~f~q~~r~t~~~~~~l~~~~~~l~ 162 (222)
+|+++++ +..+..+|++|.++|+++|||+++|+|+++++.++|+|+.+|++.+|+|+|++|+|+.+++++++.++++.
T Consensus 78 ~~~~~~~--~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~ 155 (219)
T PLN03160 78 KLELINN--TTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKIL 155 (219)
T ss_pred eeeeccC--CCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceec
Confidence 9999763 23578999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred CCcccccccccCeEEEEEEEEEEEEEEEEEEEEeeeEEEEEeEEEEEccccccc-cccccc
Q 043236 163 TVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQ-QECRGQ 222 (222)
Q Consensus 163 ~~~~l~~d~~~G~v~l~~~~~v~grv~v~~~~~~~~~~~v~C~i~v~~~~~~i~-~~C~~~ 222 (222)
++++|.+|+++|.++|+++++++|||+++++++++++++++|++.|+..+.+++ ++|+.+
T Consensus 156 ~~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~ 216 (219)
T PLN03160 156 SVPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRH 216 (219)
T ss_pred cchhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEeccc
Confidence 678999999999999999999999999999999999999999999999999999 999975
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.49 E-value=9.4e-14 Score=101.76 Aligned_cols=98 Identities=27% Similarity=0.430 Sum_probs=74.2
Q ss_pred EEEEECCCeeeEEEeCeEEEEEECCEEEE-eEEeCCeeeccCceEEEEEEEeeccccccCCcccccccccCeEEEEEEEE
Q 043236 105 DVSVKNPNYNSFKYGNTTTSIYYGGVVVG-EGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTR 183 (222)
Q Consensus 105 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg-~~~vp~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G~v~l~~~~~ 183 (222)
+|+++|||.++++|++.++.++|+|..+| ....++|+|++++++.+.+.+.+....+ ...+.++. .|..++++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l--~~~l~~~~-~~~~~~~v~~~ 77 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL--PRLLKDLL-AGRVPFDVTYR 77 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH--HHHHHHHH-HTTSCEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH--HHHHHhhh-ccccceEEEEE
Confidence 46789999999999999999999999999 7789999999999999999887765544 24455555 66778888889
Q ss_pred EEEEEEE-EEEEEeeeEEEEEeE
Q 043236 184 IDGKIKL-IKVLKKSVVLKMNCS 205 (222)
Q Consensus 184 v~grv~v-~~~~~~~~~~~v~C~ 205 (222)
++|++++ +..+..+..+.++|+
T Consensus 78 ~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 78 IRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEcccceeeeEEEeEEeE
Confidence 9999995 443334455555553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.82 E-value=4.2e-08 Score=72.50 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=67.2
Q ss_pred ceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeC-CeeeccCceEEEEEEEeeccccccCCcccccccccC
Q 043236 96 GDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIP-QAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSR 174 (222)
Q Consensus 96 ~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp-~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G 174 (222)
..++.++.+.+.++|||.+++.|++.+..++|+|..+|++..+ ++.+++++++.+.+++.+. ... ...+..++..|
T Consensus 11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~--~~~~~~~l~~~ 87 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL--AEALIWHIANG 87 (100)
T ss_pred cceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH--hHHHHHhhccC
Confidence 4677888899999999999999999999999999999999986 7999999999999988873 322 24555565544
Q ss_pred -eEEEEEEEE
Q 043236 175 -SLNMSSYTR 183 (222)
Q Consensus 175 -~v~l~~~~~ 183 (222)
.++++++++
T Consensus 88 ~~~~y~l~g~ 97 (100)
T smart00769 88 EEIPYRLDGK 97 (100)
T ss_pred CCccEEEEEE
Confidence 355544333
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.55 E-value=1.1e-06 Score=74.20 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=65.4
Q ss_pred HHHHhhheeecCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeC
Q 043236 59 IIIVIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIP 138 (222)
Q Consensus 59 ~lil~~lv~rPk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp 138 (222)
.++++||+ ||.-.++-.++......++.. ...+.+++...+.+.|||+..+.-.+.++++.|....+|.+...
T Consensus 90 ~L~iFFLf--PRsV~v~~~gv~s~~V~f~~~-----~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~ 162 (238)
T PF07092_consen 90 GLVIFFLF--PRSVTVSPVGVKSVTVSFNPD-----KSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNS 162 (238)
T ss_pred HheEEEEe--CcEEEEecCcEEEEEEEEeCC-----CCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEec
Confidence 33444444 876655555544444444332 24567777888999999999999999999999999999999876
Q ss_pred Ce-eeccCceEEEEEEEee
Q 043236 139 QA-QAKARRTLRMNVTVDL 156 (222)
Q Consensus 139 ~f-~q~~r~t~~~~~~l~~ 156 (222)
.. .+++++...+.+++..
T Consensus 163 ~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 163 NITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred ceEEecccCCceEEEEeeE
Confidence 54 6788888777775543
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.77 E-value=0.0028 Score=50.03 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=67.9
Q ss_pred EEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEe-CCeeeccCceEEEEEEEeeccccccCCcccccccccCeE-E
Q 043236 100 VTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHI-PQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSL-N 177 (222)
Q Consensus 100 ~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~v-p~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G~v-~ 177 (222)
..+-+.+.++|||-+.+-.......++-+|..+|++.. .++..++++...+.+++.++..++- ..+...+..|.= +
T Consensus 50 ~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~k--e~w~~hi~ngErs~ 127 (161)
T COG5608 50 TEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIK--EWWVTHIENGERST 127 (161)
T ss_pred eEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHH--HHHHHHhhccCccc
Confidence 45566778899999999999999999999999999964 6699999999999998877655542 344446665543 4
Q ss_pred EEEEEEEEEEEEEEEE
Q 043236 178 MSSYTRIDGKIKLIKV 193 (222)
Q Consensus 178 l~~~~~v~grv~v~~~ 193 (222)
+.. ++.+.+++++.
T Consensus 128 Ir~--~i~~~v~vg~~ 141 (161)
T COG5608 128 IRV--RIKGVVKVGGM 141 (161)
T ss_pred EEE--EEEEEEEEccE
Confidence 444 66666676664
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.53 E-value=0.014 Score=52.68 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=27.6
Q ss_pred EEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEE
Q 043236 99 NVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVG 133 (222)
Q Consensus 99 n~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg 133 (222)
.+-|++.|.+.|||.+.|..+++++.++-+-.-+|
T Consensus 347 ELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 347 ELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred eEEEeeEEEEECCCeEEEEeccceeeeEecCCccC
Confidence 45556677779999999999999999986654444
No 7
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=85.67 E-value=0.26 Score=32.67 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=8.6
Q ss_pred cccccceeeehhhHHHH
Q 043236 36 LQHRRRCLQCFGCVTAL 52 (222)
Q Consensus 36 ~~~~r~~~~cc~~~~~~ 52 (222)
++|+|+|..|.++++++
T Consensus 26 r~RrRrc~~~v~~v~~~ 42 (60)
T PF06072_consen 26 RRRRRRCRLAVAIVFAV 42 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33555555555555444
No 8
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=81.60 E-value=1.4 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.602 Sum_probs=15.2
Q ss_pred hHHHHH-HHHHHHHHHhhheeecCC
Q 043236 48 CVTALL-LVAVVIIIVIATVFHVKN 71 (222)
Q Consensus 48 ~~~~~l-ll~~i~lil~~lv~rPk~ 71 (222)
|.++++ .+.++.++++|.++.-++
T Consensus 12 c~l~~llflv~imliif~f~le~qd 36 (43)
T PF11395_consen 12 CFLSFLLFLVIIMLIIFWFSLEIQD 36 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555 666667778887765443
No 9
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=79.48 E-value=24 Score=26.43 Aligned_cols=74 Identities=24% Similarity=0.400 Sum_probs=35.9
Q ss_pred Hhhheee-cCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCC-eeeEEEeCeEEEEEECCEEEEe--EEe
Q 043236 62 VIATVFH-VKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPN-YNSFKYGNTTTSIYYGGVVVGE--GHI 137 (222)
Q Consensus 62 l~~lv~r-Pk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN-~~~i~y~~~~~~v~Y~g~~vg~--~~v 137 (222)
++|+.|. ...|.+ +.+..+|.+.++ .++.++|++ + ++|. ..-=.. -...|++..+|. ..+
T Consensus 21 ~~w~~~~~~~~~~v---~~~~~gf~vv~d------~~v~v~f~V--t-r~~~~~a~C~V----rA~~~d~aeVGrreV~v 84 (112)
T PF14155_consen 21 VAWFGYSQFGSPPV---SAEVIGFEVVDD------STVEVTFDV--T-RDPGRPAVCIV----RALDYDGAEVGRREVLV 84 (112)
T ss_pred HhHhhhhhccCCCc---eEEEEEEEECCC------CEEEEEEEE--E-ECCCCCEEEEE----EEEeCCCCEEEEEEEEE
Confidence 3444544 445555 344455555542 244554443 3 3366 332111 123478888984 466
Q ss_pred CCeeeccCceEEEEEEE
Q 043236 138 PQAQAKARRTLRMNVTV 154 (222)
Q Consensus 138 p~f~q~~r~t~~~~~~l 154 (222)
|+ +...+..+.+++
T Consensus 85 p~---~~~~~~~~~v~v 98 (112)
T PF14155_consen 85 PP---SGERTVRVTVTV 98 (112)
T ss_pred CC---CCCcEEEEEEEE
Confidence 76 334444444444
No 10
>PLN03160 uncharacterized protein; Provisional
Probab=74.54 E-value=50 Score=27.65 Aligned_cols=47 Identities=11% Similarity=0.256 Sum_probs=27.4
Q ss_pred ccccccceeeeh-hhHHHHH-HHHHHHHHHhhheeecC--CCEEEEEEEEEe
Q 043236 35 TLQHRRRCLQCF-GCVTALL-LVAVVIIIVIATVFHVK--NPSIRMNSVTIQ 82 (222)
Q Consensus 35 ~~~~~r~~~~cc-~~~~~~l-ll~~i~lil~~lv~rPk--~P~~~v~~~~l~ 82 (222)
+.+++.+|+.|+ .++++++ ++++ +++++|-.=.|+ --.++++++.+.
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~-l~~~vfrPk~P~~~v~~v~l~~~~~~ 82 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILV-LVFTVFRVKDPVIKMNGVTVTKLELI 82 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHh-eeeEEEEccCCeEEEEEEEEeeeeec
Confidence 456666666664 4556777 4444 444444567774 356666666654
No 11
>PF14927 Neurensin: Neurensin
Probab=72.12 E-value=5.2 Score=31.35 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhheeecCCCEEE
Q 043236 52 LLLVAVVIIIVIATVFHVKNPSIR 75 (222)
Q Consensus 52 ~lll~~i~lil~~lv~rPk~P~~~ 75 (222)
+|+++++++++.|++ |++++..
T Consensus 54 ~Ll~Gi~~l~vgY~v--P~~~e~~ 75 (140)
T PF14927_consen 54 LLLLGIVALTVGYLV--PPKIEVF 75 (140)
T ss_pred HHHHHHHHHHhhccc--CCcceec
Confidence 337777788888886 7665543
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.42 E-value=3.1 Score=36.74 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=3.8
Q ss_pred ccceeeehhh
Q 043236 39 RRRCLQCFGC 48 (222)
Q Consensus 39 ~r~~~~cc~~ 48 (222)
-|+|.+||++
T Consensus 267 aRK~k~i~ii 276 (297)
T KOG0810|consen 267 ARKWKIIIII 276 (297)
T ss_pred hhhceeeeeh
Confidence 3444433333
No 13
>PF15339 Afaf: Acrosome formation-associated factor
Probab=64.00 E-value=3.5 Score=33.36 Aligned_cols=24 Identities=8% Similarity=0.351 Sum_probs=16.8
Q ss_pred CCCCCCCC-CCcCCCCcCCCCChhh
Q 043236 2 ANANNSEQ-VKPLAPAEYHLRSDYE 25 (222)
Q Consensus 2 ~~~~~~~~-~~p~~p~~~~~~~~~~ 25 (222)
..|.|+|| ++|++-...++.++|.
T Consensus 97 ~~~d~kDqlF~pIP~SDvn~t~ed~ 121 (200)
T PF15339_consen 97 VEMDEKDQLFHPIPSSDVNATNEDK 121 (200)
T ss_pred ccccccchhhccCCchhcCcccccc
Confidence 35788999 8888766666655543
No 14
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=63.20 E-value=68 Score=26.87 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=30.6
Q ss_pred ceEEEEEEEEEEEECCCeeeEEE--eCeEEEEEECCEEEE
Q 043236 96 GDENVTLLADVSVKNPNYNSFKY--GNTTTSIYYGGVVVG 133 (222)
Q Consensus 96 ~~ln~tl~~~v~v~NPN~~~i~y--~~~~~~v~Y~g~~vg 133 (222)
..+..+-+.+|.++=|||+.+.+ +.....++|+|..+-
T Consensus 35 qklq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 35 QKLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred ceEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEE
Confidence 45666667889999999888777 678889999997754
No 15
>PRK05529 cell division protein FtsQ; Provisional
Probab=59.53 E-value=18 Score=31.02 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.5
Q ss_pred CCEEEEEEEEEeeEE
Q 043236 71 NPSIRMNSVTIQRLE 85 (222)
Q Consensus 71 ~P~~~v~~~~l~~f~ 85 (222)
.|.|.|+.+++++-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 599999999998543
No 16
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=58.46 E-value=1e+02 Score=25.26 Aligned_cols=20 Identities=5% Similarity=0.022 Sum_probs=16.5
Q ss_pred ecCCCEEEEEEEEEeeEEee
Q 043236 68 HVKNPSIRMNSVTIQRLEFL 87 (222)
Q Consensus 68 rPk~P~~~v~~~~l~~f~~~ 87 (222)
.++.|.|.+++++...|+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46789999999998888654
No 17
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=58.38 E-value=82 Score=24.11 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=16.2
Q ss_pred HHhhheeecCCCEEEEEEEEEe
Q 043236 61 IVIATVFHVKNPSIRMNSVTIQ 82 (222)
Q Consensus 61 il~~lv~rPk~P~~~v~~~~l~ 82 (222)
+..|+.-++++|.+.+......
T Consensus 23 ~y~~l~~~~~pp~l~v~~~~~~ 44 (122)
T TIGR02588 23 AYDWLRYSNKAAVLEVAPAEVE 44 (122)
T ss_pred HHHhhccCCCCCeEEEeehhee
Confidence 3457777889999988776654
No 18
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.98 E-value=4.3 Score=33.14 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=23.6
Q ss_pred eeeehhhHHHHHHHHHHHHHHhhheeecCCCEEEEEEEEE
Q 043236 42 CLQCFGCVTALLLVAVVIIIVIATVFHVKNPSIRMNSVTI 81 (222)
Q Consensus 42 ~~~cc~~~~~~lll~~i~lil~~lv~rPk~P~~~v~~~~l 81 (222)
|...|.+.++++++++ +.++..++.|+.|...+.+++=
T Consensus 11 WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 11 WKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 5545555555553333 3334468889998888887754
No 19
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=55.49 E-value=72 Score=25.48 Aligned_cols=11 Identities=0% Similarity=-0.602 Sum_probs=5.0
Q ss_pred HHHHHHhhhee
Q 043236 57 VVIIIVIATVF 67 (222)
Q Consensus 57 ~i~lil~~lv~ 67 (222)
+..+..+|+..
T Consensus 32 a~~~~~~~~~~ 42 (159)
T COG1580 32 AGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHhhhc
Confidence 33444455553
No 20
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=53.94 E-value=13 Score=29.61 Aligned_cols=35 Identities=6% Similarity=0.012 Sum_probs=18.4
Q ss_pred ccceeeehhhHHHHHHHHHHHHHHhhheeecCCCE
Q 043236 39 RRRCLQCFGCVTALLLVAVVIIIVIATVFHVKNPS 73 (222)
Q Consensus 39 ~r~~~~cc~~~~~~lll~~i~lil~~lv~rPk~P~ 73 (222)
.|+..+-|++-+.+.+|++++++++|+..|+|.-.
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeEEEecccCc
Confidence 33444444443333344445566667777777644
No 21
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=51.95 E-value=78 Score=25.26 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=9.1
Q ss_pred EEEeCeEEEEEECCE
Q 043236 116 FKYGNTTTSIYYGGV 130 (222)
Q Consensus 116 i~y~~~~~~v~Y~g~ 130 (222)
.+|=...+.+.+++.
T Consensus 86 ~ryLkv~i~L~~~~~ 100 (166)
T PRK12785 86 VQYLKLKVVLEVKDE 100 (166)
T ss_pred ceEEEEEEEEEECCH
Confidence 466666666666654
No 22
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=51.26 E-value=23 Score=29.74 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=10.2
Q ss_pred CCCCCCCCCcCCCCc
Q 043236 3 NANNSEQVKPLAPAE 17 (222)
Q Consensus 3 ~~~~~~~~~p~~p~~ 17 (222)
++.|.+...+|+|..
T Consensus 72 ~~~~t~~~~sL~p~s 86 (227)
T PF05399_consen 72 NTPETSTPVSLAPKS 86 (227)
T ss_pred CCcCCCCcccccCCC
Confidence 456677777888753
No 23
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=51.02 E-value=25 Score=28.11 Aligned_cols=14 Identities=7% Similarity=0.059 Sum_probs=7.5
Q ss_pred EEEeCeEEEEEECC
Q 043236 116 FKYGNTTTSIYYGG 129 (222)
Q Consensus 116 i~y~~~~~~v~Y~g 129 (222)
-+|=...+.+.+++
T Consensus 86 ~ryLkv~i~l~~~d 99 (170)
T PRK05696 86 DRLVQIKVQLMVRG 99 (170)
T ss_pred ceEEEEEEEEEECC
Confidence 45555555555554
No 24
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=50.25 E-value=15 Score=31.23 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=9.5
Q ss_pred HHHHHHHhhheeec
Q 043236 56 AVVIIIVIATVFHV 69 (222)
Q Consensus 56 ~~i~lil~~lv~rP 69 (222)
..+++.++|+.|||
T Consensus 235 sl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 235 SLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHHhheeeCc
Confidence 34455567888887
No 25
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=49.94 E-value=12 Score=28.19 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=9.5
Q ss_pred HHHHhhheeecCCCE
Q 043236 59 IIIVIATVFHVKNPS 73 (222)
Q Consensus 59 ~lil~~lv~rPk~P~ 73 (222)
++.++|+.+||+.=+
T Consensus 12 ~~~i~yf~iRPQkKr 26 (113)
T PRK06531 12 MLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHheechHHHH
Confidence 334456789997544
No 26
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=49.86 E-value=41 Score=25.30 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=18.2
Q ss_pred EEEEEEEEEECCCeeeEEEeCeEEE
Q 043236 100 VTLLADVSVKNPNYNSFKYGNTTTS 124 (222)
Q Consensus 100 ~tl~~~v~v~NPN~~~i~y~~~~~~ 124 (222)
..+.+++.+.||..+++..++..+.
T Consensus 100 ~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCeEEEEeccEEEe
Confidence 4456677889999888877776654
No 27
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=46.34 E-value=1e+02 Score=23.11 Aligned_cols=64 Identities=9% Similarity=0.190 Sum_probs=37.1
Q ss_pred EEEeEEeCCeeeccCceE-EEEEEEeeccccccCCccccccc-ccCeEEEEEEEEEEEEEEEEEEEEeee
Q 043236 131 VVGEGHIPQAQAKARRTL-RMNVTVDLNPEKFLTVPSLKSDI-LSRSLNMSSYTRIDGKIKLIKVLKKSV 198 (222)
Q Consensus 131 ~vg~~~vp~f~q~~r~t~-~~~~~l~~~~~~l~~~~~l~~d~-~~G~v~l~~~~~v~grv~v~~~~~~~~ 198 (222)
.+|...+|+......++. .++.++.+.....+ .+|..++ ....+.+.++++. +++++++....+
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~~~f--~~f~~~~~~~~~~~l~l~g~~--~~~~g~l~~~~i 67 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQDAF--TQFVTALLFNEEVTLTLRGKT--DTHLGGLPFSGI 67 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCHHHH--HHHHHHHHhCCcEEEEEEEee--eEEEccEEEEEE
Confidence 578889999999333333 34445554322211 3455554 4556888887663 677777644433
No 28
>PHA03093 EEV glycoprotein; Provisional
Probab=44.84 E-value=10 Score=30.95 Aligned_cols=24 Identities=4% Similarity=0.007 Sum_probs=14.4
Q ss_pred ECCCeeeEEEeCeEEEEEECCEEE
Q 043236 109 KNPNYNSFKYGNTTTSIYYGGVVV 132 (222)
Q Consensus 109 ~NPN~~~i~y~~~~~~v~Y~g~~v 132 (222)
+|-+==||.|++.-..+.|....+
T Consensus 97 ~~~~C~GI~~~~~C~~~~~epkTf 120 (185)
T PHA03093 97 HKESCKGIVYDGSCYIFHSEPKTF 120 (185)
T ss_pred ccCcCCCeecCCEeEEecCCCcCH
Confidence 555544778876666666644433
No 29
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=44.46 E-value=16 Score=32.01 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=13.6
Q ss_pred hhhHHHHH-HHHHHHHHHhhheeecCC
Q 043236 46 FGCVTALL-LVAVVIIIVIATVFHVKN 71 (222)
Q Consensus 46 c~~~~~~l-ll~~i~lil~~lv~rPk~ 71 (222)
|++.+++| +|++++++++-+.+|-|.
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55655555 555555554433455443
No 30
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=43.93 E-value=1.2e+02 Score=21.79 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=33.7
Q ss_pred EEEEEEEEECCC--e-eeEEEeCeEEEEEECCEEEE--eEEeCCeeeccCceEEEEEEEe
Q 043236 101 TLLADVSVKNPN--Y-NSFKYGNTTTSIYYGGVVVG--EGHIPQAQAKARRTLRMNVTVD 155 (222)
Q Consensus 101 tl~~~v~v~NPN--~-~~i~y~~~~~~v~Y~g~~vg--~~~vp~f~q~~r~t~~~~~~l~ 155 (222)
.+.+.++++||. . -.+...=....++|.|.... .........+++++..+...+.
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 344556679997 3 23444446677789997643 3455667788888887777654
No 31
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=43.87 E-value=1.5e+02 Score=22.74 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=47.6
Q ss_pred EEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEE-ECCEEEEeEEe-C----------Cee
Q 043236 74 IRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY-YGGVVVGEGHI-P----------QAQ 141 (222)
Q Consensus 74 ~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~-Y~g~~vg~~~v-p----------~f~ 141 (222)
-.++.+++.+..+..... ....+ .++.+++|.......|-...++++ -+|+.+.+-.+ | ...
T Consensus 48 ~~~~~l~i~~~~~~~~~~--~~~~l----~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~ 121 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPD--GPGVL----VVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAG 121 (149)
T ss_pred cCcceEEEeeeeEEeecC--CCCEE----EEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccc
Confidence 455666665554443211 12233 334456999999999999999998 77888887665 4 234
Q ss_pred eccCceEEEEEEEe
Q 043236 142 AKARRTLRMNVTVD 155 (222)
Q Consensus 142 q~~r~t~~~~~~l~ 155 (222)
.+++.+..+...+.
T Consensus 122 l~pg~~~~~~~~~~ 135 (149)
T PF11906_consen 122 LPPGESVPFRLRLE 135 (149)
T ss_pred cCCCCeEEEEEEee
Confidence 55666666665544
No 32
>PTZ00370 STEVOR; Provisional
Probab=43.60 E-value=17 Score=31.92 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=13.2
Q ss_pred hhhHHHHH-HHHHHHHHHhhheeecC
Q 043236 46 FGCVTALL-LVAVVIIIVIATVFHVK 70 (222)
Q Consensus 46 c~~~~~~l-ll~~i~lil~~lv~rPk 70 (222)
|++.+++| +|++++++++-+.||-|
T Consensus 257 ygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56665555 55555555443345544
No 33
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=43.16 E-value=7.4 Score=31.06 Aligned_cols=20 Identities=20% Similarity=0.183 Sum_probs=10.6
Q ss_pred cccccccceeeehhhHHHHH
Q 043236 34 LTLQHRRRCLQCFGCVTALL 53 (222)
Q Consensus 34 ~~~~~~r~~~~cc~~~~~~l 53 (222)
++.|-.+||+++|.=+.+++
T Consensus 23 ~r~k~~~R~i~l~~Ri~~~i 42 (161)
T PHA02673 23 KRQKAIRRYIKLFFRLMAAI 42 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666655444444
No 34
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=42.38 E-value=32 Score=29.54 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=12.9
Q ss_pred ceEEEEEEEEEEEECCC-eee
Q 043236 96 GDENVTLLADVSVKNPN-YNS 115 (222)
Q Consensus 96 ~~ln~tl~~~v~v~NPN-~~~ 115 (222)
.++.-+=++++.++||| .+.
T Consensus 104 l~~~S~rnvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 104 LYLQSARNVTVNARNPNGKVT 124 (292)
T ss_pred eEEEeccCeeEEccCCCCcee
Confidence 34444445566779999 764
No 35
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=39.61 E-value=1.7e+02 Score=22.42 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=53.4
Q ss_pred CCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECC--EEEEeEEeCCeeeccCceE
Q 043236 71 NPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGG--VVVGEGHIPQAQAKARRTL 148 (222)
Q Consensus 71 ~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g--~~vg~~~vp~f~q~~r~t~ 148 (222)
.|.+.+.++.+...+. .-.+.+.++||.-.-+.==.+++.++..| ..+.......+...|.+.-
T Consensus 27 ~p~L~l~~v~~~~~n~--------------~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f 92 (140)
T PF11797_consen 27 PPKLKLGKVKPGQING--------------RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNF 92 (140)
T ss_pred CcccEEeeeeeeEECC--------------eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeE
Confidence 4666666666554432 22334556999844444345677788877 4688888888999887774
Q ss_pred EEEEEEeeccccccCCcccccccccCeEEEEEEEE
Q 043236 149 RMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTR 183 (222)
Q Consensus 149 ~~~~~l~~~~~~l~~~~~l~~d~~~G~v~l~~~~~ 183 (222)
.+ .+...+. .+..|...+++.+.
T Consensus 93 ~~--~i~~~~~----------~lk~G~Y~l~~~~~ 115 (140)
T PF11797_consen 93 NF--PIPLGGK----------KLKPGKYTLKITAK 115 (140)
T ss_pred Ee--EecCCCc----------CccCCEEEEEEEEE
Confidence 44 3333222 34678888777433
No 36
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.01 E-value=28 Score=21.80 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=8.8
Q ss_pred HHHHHHhhheeecCC
Q 043236 57 VVIIIVIATVFHVKN 71 (222)
Q Consensus 57 ~i~lil~~lv~rPk~ 71 (222)
++.+.++|.+|+|+.
T Consensus 20 ~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHcccc
Confidence 334444556888874
No 37
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=38.81 E-value=2e+02 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=18.7
Q ss_pred ECCC-eeeEEEeCeEEEEEECCEE-EEeEEe
Q 043236 109 KNPN-YNSFKYGNTTTSIYYGGVV-VGEGHI 137 (222)
Q Consensus 109 ~NPN-~~~i~y~~~~~~v~Y~g~~-vg~~~v 137 (222)
.--| .+.+.|...--+++=.|+. ++++.+
T Consensus 79 tD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 79 TDGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred ecCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 4555 7777777776666666653 556665
No 38
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=38.20 E-value=25 Score=25.79 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhheeecCCC
Q 043236 54 LVAVVIIIVIATVFHVKNP 72 (222)
Q Consensus 54 ll~~i~lil~~lv~rPk~P 72 (222)
.+.+++++.+|+++||+.=
T Consensus 14 ~~vl~~~ifyFli~RPQrK 32 (97)
T COG1862 14 PLVLIFAIFYFLIIRPQRK 32 (97)
T ss_pred HHHHHHHHHHHhhcCHHHH
Confidence 4444466667889999743
No 39
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.95 E-value=22 Score=30.99 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.5
Q ss_pred Hhhhee
Q 043236 62 VIATVF 67 (222)
Q Consensus 62 l~~lv~ 67 (222)
++|+.+
T Consensus 262 ~i~~~~ 267 (269)
T KOG0811|consen 262 IIAGIA 267 (269)
T ss_pred HHHHhh
Confidence 334443
No 40
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=37.62 E-value=19 Score=31.19 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=4.7
Q ss_pred EEEEECCC
Q 043236 105 DVSVKNPN 112 (222)
Q Consensus 105 ~v~v~NPN 112 (222)
.++++|.|
T Consensus 91 ~~~~r~~~ 98 (264)
T PF04790_consen 91 TLNARNEN 98 (264)
T ss_pred EEEEecCC
Confidence 34447777
No 41
>PF15018 InaF-motif: TRP-interacting helix
Probab=37.42 E-value=74 Score=19.20 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=15.6
Q ss_pred cceeeehhhHHHHH--HHHHHHHHHhhheee
Q 043236 40 RRCLQCFGCVTALL--LVAVVIIIVIATVFH 68 (222)
Q Consensus 40 r~~~~cc~~~~~~l--ll~~i~lil~~lv~r 68 (222)
+++.|++..++=++ -++++.+.++|..+.
T Consensus 2 ~k~~R~~tV~~Yl~~VSl~Ai~LsiYY~f~W 32 (38)
T PF15018_consen 2 KKWVRVLTVVAYLFSVSLAAIVLSIYYIFFW 32 (38)
T ss_pred ceEEeeHHHHHHHHHHHHHHHHHHHHHheee
Confidence 35666665554333 344556666665554
No 42
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=35.02 E-value=42 Score=21.17 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=7.8
Q ss_pred HHHHhhheeecCC
Q 043236 59 IIIVIATVFHVKN 71 (222)
Q Consensus 59 ~lil~~lv~rPk~ 71 (222)
.+.+++.+|+|+.
T Consensus 23 Figiv~wa~~p~~ 35 (48)
T cd01324 23 FLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHhCCCc
Confidence 3334445899975
No 43
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=34.88 E-value=1e+02 Score=25.00 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=7.0
Q ss_pred eeecCCCEEEEE
Q 043236 66 VFHVKNPSIRMN 77 (222)
Q Consensus 66 v~rPk~P~~~v~ 77 (222)
++.+..|...++
T Consensus 31 ~~~~~~~~~~i~ 42 (175)
T PF04573_consen 31 YFHPPSPSVSIS 42 (175)
T ss_pred hccCCCCceEEE
Confidence 466666665543
No 44
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=33.69 E-value=31 Score=25.82 Aligned_cols=17 Identities=0% Similarity=-0.099 Sum_probs=10.9
Q ss_pred HHHHHHhhheeecCCCE
Q 043236 57 VVIIIVIATVFHVKNPS 73 (222)
Q Consensus 57 ~i~lil~~lv~rPk~P~ 73 (222)
+++++++|+.+||+.=+
T Consensus 12 ~i~~i~yF~~iRPQkKr 28 (109)
T PRK05886 12 LIMGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHHHccHHHHH
Confidence 33455667889997543
No 45
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=33.03 E-value=40 Score=25.23 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=11.1
Q ss_pred HHHHhhheeecCC--CEEEE
Q 043236 59 IIIVIATVFHVKN--PSIRM 76 (222)
Q Consensus 59 ~lil~~lv~rPk~--P~~~v 76 (222)
+++++||++--+. |.|.|
T Consensus 9 ~~li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 9 AALIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHHHccccCceEEEE
Confidence 3456777766654 66655
No 46
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=32.48 E-value=96 Score=23.41 Aligned_cols=7 Identities=29% Similarity=0.339 Sum_probs=3.4
Q ss_pred CCCcCCC
Q 043236 14 APAEYHL 20 (222)
Q Consensus 14 ~p~~~~~ 20 (222)
-|+.-|.
T Consensus 34 cP~~sQh 40 (128)
T PF15145_consen 34 CPAGSQH 40 (128)
T ss_pred CcccccC
Confidence 3555544
No 47
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.11 E-value=49 Score=22.06 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=8.7
Q ss_pred HHHHhhheeecCC
Q 043236 59 IIIVIATVFHVKN 71 (222)
Q Consensus 59 ~lil~~lv~rPk~ 71 (222)
.+.++|.+|||+.
T Consensus 22 fiavi~~ayr~~~ 34 (60)
T COG4736 22 FIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHhcccc
Confidence 3444567999975
No 48
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=31.23 E-value=1.9e+02 Score=22.22 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=32.0
Q ss_pred EEEEEEEEEEECCC-eeeEEEeCeEEEEEEC--CEEEEeEEeCCeeeccCceEEEEE
Q 043236 99 NVTLLADVSVKNPN-YNSFKYGNTTTSIYYG--GVVVGEGHIPQAQAKARRTLRMNV 152 (222)
Q Consensus 99 n~tl~~~v~v~NPN-~~~i~y~~~~~~v~Y~--g~~vg~~~vp~f~q~~r~t~~~~~ 152 (222)
...|++.+++||.+ +-.++-.+.+ ||+ |..|-.---.|.+.++-.+..+-+
T Consensus 22 ~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 22 PFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred eEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 34456677889999 7777654432 453 455554444667777777766555
No 49
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=30.87 E-value=52 Score=24.72 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=5.7
Q ss_pred eehhhHHHHH
Q 043236 44 QCFGCVTALL 53 (222)
Q Consensus 44 ~cc~~~~~~l 53 (222)
...+++++++
T Consensus 28 yviGFiLSii 37 (110)
T TIGR02908 28 QIVTFALMIF 37 (110)
T ss_pred HHHHHHHHHH
Confidence 3566766544
No 50
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=30.45 E-value=38 Score=28.53 Aligned_cols=7 Identities=14% Similarity=0.116 Sum_probs=2.9
Q ss_pred hhheeec
Q 043236 63 IATVFHV 69 (222)
Q Consensus 63 ~~lv~rP 69 (222)
+|.+|-+
T Consensus 31 a~~lf~~ 37 (217)
T PF07423_consen 31 AYQLFFG 37 (217)
T ss_pred hhhheec
Confidence 3344443
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.10 E-value=43 Score=25.62 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=5.8
Q ss_pred HHHHhhheeec-CCCEEEEEE
Q 043236 59 IIIVIATVFHV-KNPSIRMNS 78 (222)
Q Consensus 59 ~lil~~lv~rP-k~P~~~v~~ 78 (222)
|++|+|++-|- |++...++.
T Consensus 81 Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 81 ILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHhccCCCCCCC
Confidence 44555556544 445555544
No 52
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.65 E-value=50 Score=20.16 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=5.4
Q ss_pred ccceeeehhhHH
Q 043236 39 RRRCLQCFGCVT 50 (222)
Q Consensus 39 ~r~~~~cc~~~~ 50 (222)
.+.-..-|+..+
T Consensus 8 ~~~vaIa~~VvV 19 (40)
T PF08693_consen 8 SNTVAIAVGVVV 19 (40)
T ss_pred CceEEEEEEEEe
Confidence 344444455543
No 53
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=28.73 E-value=19 Score=26.71 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=0.0
Q ss_pred ccceeeehhhH
Q 043236 39 RRRCLQCFGCV 49 (222)
Q Consensus 39 ~r~~~~cc~~~ 49 (222)
+||-.+|+..+
T Consensus 24 ~rR~~k~~~~i 34 (106)
T PF11837_consen 24 RRRPLKCLAAI 34 (106)
T ss_dssp -----------
T ss_pred cCCcchhHHHH
Confidence 33333444443
No 54
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=28.63 E-value=45 Score=24.41 Aligned_cols=26 Identities=4% Similarity=0.212 Sum_probs=11.3
Q ss_pred ehhhHHHHH-HHHHHHHHHhhheeecC
Q 043236 45 CFGCVTALL-LVAVVIIIVIATVFHVK 70 (222)
Q Consensus 45 cc~~~~~~l-ll~~i~lil~~lv~rPk 70 (222)
+++.+++++ +++++.++.+|.++|=|
T Consensus 64 ili~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred hHHHHHHHHHHHHHHhhheEEEEEecc
Confidence 333334444 44444444455555443
No 55
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=27.47 E-value=55 Score=23.14 Aligned_cols=16 Identities=6% Similarity=0.279 Sum_probs=10.4
Q ss_pred HHHHHHHhhheeecCC
Q 043236 56 AVVIIIVIATVFHVKN 71 (222)
Q Consensus 56 ~~i~lil~~lv~rPk~ 71 (222)
++++++.+|+.+||+.
T Consensus 10 vv~~~i~yf~~~rpqk 25 (84)
T TIGR00739 10 VLIFLIFYFLIIRPQR 25 (84)
T ss_pred HHHHHHHHHheechHH
Confidence 3445556778889964
No 56
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=27.46 E-value=30 Score=25.14 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=5.8
Q ss_pred HHHHHHhhheee
Q 043236 57 VVIIIVIATVFH 68 (222)
Q Consensus 57 ~i~lil~~lv~r 68 (222)
++.++++|+++|
T Consensus 82 lv~~l~w~f~~r 93 (96)
T PTZ00382 82 LVGFLCWWFVCR 93 (96)
T ss_pred HHHHHhheeEEe
Confidence 334444555555
No 57
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.10 E-value=3.1e+02 Score=21.55 Aligned_cols=16 Identities=0% Similarity=-0.224 Sum_probs=8.7
Q ss_pred eEEEeCeEEEEEECCE
Q 043236 115 SFKYGNTTTSIYYGGV 130 (222)
Q Consensus 115 ~i~y~~~~~~v~Y~g~ 130 (222)
+-+|=...+.+.+.+.
T Consensus 77 ~~rylkv~i~L~~~~~ 92 (162)
T PRK07021 77 ADRVLYVGLTLRLPDE 92 (162)
T ss_pred CceEEEEEEEEEECCH
Confidence 3455555566655553
No 58
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=26.25 E-value=1.2e+02 Score=21.21 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.8
Q ss_pred CeeeEEEeCeEEEEEECCEEEEeEEeCCe
Q 043236 112 NYNSFKYGNTTTSIYYGGVVVGEGHIPQA 140 (222)
Q Consensus 112 N~~~i~y~~~~~~v~Y~g~~vg~~~vp~f 140 (222)
|++.-+|.+..+.+|+.+..||+..++..
T Consensus 8 d~V~gkf~ng~l~LY~~~e~IG~~~~~~~ 36 (76)
T PF10830_consen 8 DKVTGKFKNGGLELYHDNEMIGEIYMTEE 36 (76)
T ss_pred cceEEEecCCcEEEEeccceeeeEccCCC
Confidence 56777788999999999999999776653
No 59
>PTZ00116 signal peptidase; Provisional
Probab=26.21 E-value=1.9e+02 Score=23.81 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=26.9
Q ss_pred cCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEE-EECCC-eeeEEEeCeEEEEEECC
Q 043236 69 VKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVS-VKNPN-YNSFKYGNTTTSIYYGG 129 (222)
Q Consensus 69 Pk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~-v~NPN-~~~i~y~~~~~~v~Y~g 129 (222)
..+|...++=..+.+|.+... ...--..++.+++++++ +-|=| |--|-| +.+.|.+
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~-~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy----v~a~Y~t 93 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRH-IKGDEAVLSLDLSYDMSKAFNWNLKQLFLY----VLVTYET 93 (185)
T ss_pred CCCceeeEEEeecccccccCC-CCceeEEEEEeeccCchhcCCccccEEEEE----EEEEEcC
Confidence 455656665445556654331 11122344444444432 45667 666655 3444543
No 60
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=26.08 E-value=88 Score=29.00 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhheeec
Q 043236 54 LVAVVIIIVIATVFHV 69 (222)
Q Consensus 54 ll~~i~lil~~lv~rP 69 (222)
++++++.+-.|+.++|
T Consensus 43 ii~~~~~~Y~~~~~~~ 58 (416)
T PF04415_consen 43 IIFIVYNIYYFLQNQP 58 (416)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 3444444445556555
No 61
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.85 E-value=84 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=13.0
Q ss_pred ceeeehhhHH-HHHHHHHHHHHHhhheeec
Q 043236 41 RCLQCFGCVT-ALLLVAVVIIIVIATVFHV 69 (222)
Q Consensus 41 ~~~~cc~~~~-~~lll~~i~lil~~lv~rP 69 (222)
+.++.++.++ +|+.+.+.++..+|....|
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P 33 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKP 33 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCc
Confidence 4444433333 3332333344456666666
No 62
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=25.83 E-value=3.1e+02 Score=21.02 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=25.6
Q ss_pred EEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEe
Q 043236 101 TLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGE 134 (222)
Q Consensus 101 tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~ 134 (222)
.+.+..+|+|-.+..+..=..++.+..++...++
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCc
Confidence 3455667799999999998999999886654443
No 63
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=25.23 E-value=45 Score=29.08 Aligned_cols=9 Identities=11% Similarity=0.519 Sum_probs=3.6
Q ss_pred cccceeeeh
Q 043236 38 HRRRCLQCF 46 (222)
Q Consensus 38 ~~r~~~~cc 46 (222)
+.++|..||
T Consensus 255 rt~k~~~~~ 263 (283)
T COG5325 255 RTKKCRFYL 263 (283)
T ss_pred hhccchhhH
Confidence 334444343
No 64
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=25.11 E-value=76 Score=18.56 Aligned_cols=8 Identities=13% Similarity=0.638 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 043236 54 LVAVVIII 61 (222)
Q Consensus 54 ll~~i~li 61 (222)
+|.+.|++
T Consensus 14 iLt~~ILv 21 (34)
T PF08113_consen 14 ILTAFILV 21 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 65
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.92 E-value=1.5e+02 Score=25.04 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=29.3
Q ss_pred EEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCCeeeccCceEEEEE
Q 043236 105 DVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNV 152 (222)
Q Consensus 105 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~f~q~~r~t~~~~~ 152 (222)
.++++||--..+.+.+..+.. +|..++ +...++.++++..+..
T Consensus 166 ~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~l 208 (235)
T COG3121 166 LLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFPL 208 (235)
T ss_pred EEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceeec
Confidence 577899997777777666666 776666 5566666666655443
No 66
>PHA03292 envelope glycoprotein I; Provisional
Probab=24.59 E-value=1.5e+02 Score=27.26 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=6.4
Q ss_pred CCCcCCCCcCC
Q 043236 9 QVKPLAPAEYH 19 (222)
Q Consensus 9 ~~~p~~p~~~~ 19 (222)
..-|.+|..+.
T Consensus 282 ~~~~~~p~~~~ 292 (413)
T PHA03292 282 EILRTPPPDPS 292 (413)
T ss_pred ccccCCCCCcc
Confidence 45555666664
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=24.51 E-value=2.5e+02 Score=19.62 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=27.7
Q ss_pred EEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCCeeeccCceEEEEEEEe
Q 043236 103 LADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVD 155 (222)
Q Consensus 103 ~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~f~q~~r~t~~~~~~l~ 155 (222)
...++++|......+|.=.... ..+..+ ...-+.+...++.+..+.+++.
T Consensus 23 ~~~v~l~N~s~~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 23 SRTVTLTNTSSIPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEEEEEEECCCCCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 3456669988555555311100 011111 2234567788888888888776
No 68
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=24.04 E-value=1.1e+02 Score=26.30 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=6.8
Q ss_pred EEECCEEEEeE
Q 043236 125 IYYGGVVVGEG 135 (222)
Q Consensus 125 v~Y~g~~vg~~ 135 (222)
|.|+|..||.+
T Consensus 51 V~~~Gv~VG~V 61 (291)
T TIGR00996 51 VRVRGVPVGKV 61 (291)
T ss_pred eEEcceEEEEE
Confidence 45667666654
No 69
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=23.95 E-value=1.7e+02 Score=22.28 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=5.6
Q ss_pred eCeEEEEEECC
Q 043236 119 GNTTTSIYYGG 129 (222)
Q Consensus 119 ~~~~~~v~Y~g 129 (222)
.+-++.|.|.|
T Consensus 80 ~~~~i~V~Y~G 90 (131)
T PF03100_consen 80 GGKEIPVVYTG 90 (131)
T ss_dssp SS-EEEEEEES
T ss_pred CCcEEEEEECC
Confidence 34455666665
No 70
>PRK10807 paraquat-inducible protein B; Provisional
Probab=23.06 E-value=2.6e+02 Score=26.83 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=14.0
Q ss_pred HhhheeecCCCEEEEEEEEEeeEE
Q 043236 62 VIATVFHVKNPSIRMNSVTIQRLE 85 (222)
Q Consensus 62 l~~lv~rPk~P~~~v~~~~l~~f~ 85 (222)
++|-.+.-+-|.|++..-+-.++.
T Consensus 34 l~~~~~~~~G~~itl~~~~a~gl~ 57 (547)
T PRK10807 34 ILFYHFSHQGPEVTLITTNAEGIE 57 (547)
T ss_pred HHHHHHHcCCeEEEEEECCCCCcC
Confidence 344455567788777665544443
No 71
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=22.96 E-value=66 Score=23.85 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=10.0
Q ss_pred HHHHHHHhhheeecCC
Q 043236 56 AVVIIIVIATVFHVKN 71 (222)
Q Consensus 56 ~~i~lil~~lv~rPk~ 71 (222)
++++++++|+.+||+.
T Consensus 25 vii~~i~yf~~~Rpqk 40 (106)
T PRK05585 25 VVFFAIFYFLIIRPQQ 40 (106)
T ss_pred HHHHHHHHHHhccHHH
Confidence 3344555677889964
No 72
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=22.31 E-value=55 Score=23.39 Aligned_cols=10 Identities=30% Similarity=0.312 Sum_probs=7.6
Q ss_pred cCCCCChhhh
Q 043236 17 EYHLRSDYED 26 (222)
Q Consensus 17 ~~~~~~~~~~ 26 (222)
..+..|+||+
T Consensus 25 Gyntms~eEk 34 (97)
T PF12650_consen 25 GYNTMSKEEK 34 (97)
T ss_pred hcccCCHHHH
Confidence 5577888886
No 73
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=22.19 E-value=54 Score=30.04 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhheeecC
Q 043236 54 LVAVVIIIVIATVFHVK 70 (222)
Q Consensus 54 ll~~i~lil~~lv~rPk 70 (222)
+-++|.++.||++.|=|
T Consensus 380 VgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 380 VGGLVGFLCWWFICRGK 396 (397)
T ss_pred HHHHHHHHhhheeeccc
Confidence 44455666788877744
No 74
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=21.69 E-value=31 Score=28.44 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=10.1
Q ss_pred ECCCeeeEEEeCeEEEEEECC
Q 043236 109 KNPNYNSFKYGNTTTSIYYGG 129 (222)
Q Consensus 109 ~NPN~~~i~y~~~~~~v~Y~g 129 (222)
.|-.==||.|++--..+.|..
T Consensus 101 ~~~tC~GI~~~n~Cl~~~~~p 121 (190)
T PF05966_consen 101 TNSTCDGIVYDNKCLTLNYEP 121 (190)
T ss_dssp --S--SSEEETTEEEEEEEEE
T ss_pred ccCcCCCcccCCEEEEecCCC
Confidence 454544777777655555443
No 75
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=21.59 E-value=69 Score=27.54 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=20.3
Q ss_pred HHHHHhhheeecCCCEEEEEEEEEee
Q 043236 58 VIIIVIATVFHVKNPSIRMNSVTIQR 83 (222)
Q Consensus 58 i~lil~~lv~rPk~P~~~v~~~~l~~ 83 (222)
..+++.|....++.|.|.+..+.+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 44 LVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHheehhhhcCCccceEEEEec
Confidence 34445677778899999999999984
No 76
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=21.27 E-value=74 Score=19.55 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhheee
Q 043236 54 LVAVVIIIVIATVFH 68 (222)
Q Consensus 54 ll~~i~lil~~lv~r 68 (222)
++..+.++++|+|+.
T Consensus 18 L~LL~FlL~fFLV~W 32 (44)
T PF08135_consen 18 LLLLVFLLFFFLVYW 32 (44)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444555543
No 77
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=21.02 E-value=56 Score=27.94 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=24.4
Q ss_pred cccceeeehhhHHHHH-HHHHHHHHHhhheeecCCCEEEEEEEEEeeEEe
Q 043236 38 HRRRCLQCFGCVTALL-LVAVVIIIVIATVFHVKNPSIRMNSVTIQRLEF 86 (222)
Q Consensus 38 ~~r~~~~cc~~~~~~l-ll~~i~lil~~lv~rPk~P~~~v~~~~l~~f~~ 86 (222)
++|++..|.++++.++ ++++ +.+++.+-++=+.|-+--.+-.=..+.+
T Consensus 38 r~r~~~~~va~~~~~l~v~~~-~~Ia~llPLK~~epy~v~vd~~tg~~~i 86 (239)
T COG3736 38 RSRRLAWRVAILFTLLAVAAV-IAIAILLPLKKTEPYVVRVDNNTGNVAI 86 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhccccccccEEEEEcCCCceEEE
Confidence 4445444444444444 3333 3444456777788876555444334444
No 78
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.49 E-value=47 Score=22.10 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=2.9
Q ss_pred ccccccc
Q 043236 35 TLQHRRR 41 (222)
Q Consensus 35 ~~~~~r~ 41 (222)
+++|+|+
T Consensus 36 er~R~r~ 42 (64)
T COG4068 36 ERKRQRN 42 (64)
T ss_pred HHHHHHH
Confidence 3334444
No 79
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=20.42 E-value=49 Score=23.74 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=11.0
Q ss_pred HHHHHHHhhheeecCC
Q 043236 56 AVVIIIVIATVFHVKN 71 (222)
Q Consensus 56 ~~i~lil~~lv~rPk~ 71 (222)
+.++++++|+.||-++
T Consensus 12 gglvliliwlwfrnrp 27 (117)
T PF09301_consen 12 GGLVLILIWLWFRNRP 27 (117)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CchhhHHHHHHHccCh
Confidence 4456667788888764
No 80
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=20.36 E-value=81 Score=25.75 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhheeecCCC
Q 043236 54 LVAVVIIIVIATVFHVKNP 72 (222)
Q Consensus 54 ll~~i~lil~~lv~rPk~P 72 (222)
++.++++++++.+++|+.|
T Consensus 13 ~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 13 LNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHhheeeEEEccCCC
Confidence 3344455556678999876
Done!