Query 043236
Match_columns 222
No_of_seqs 156 out of 742
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.6 2E-07 6.7E-12 74.6 10.2 103 69-185 42-146 (174)
2 1xo8_A AT1G01470; structural g 98.3 4E-07 1.4E-11 71.2 3.4 103 69-185 19-123 (151)
3 3but_A Uncharacterized protein 98.1 5.5E-05 1.9E-09 58.0 12.9 90 99-192 17-108 (136)
4 3j1r_A Archaeal adhesion filam 52.1 12 0.0004 19.7 2.3 13 54-66 12-24 (26)
5 2rdd_B UPF0092 membrane protei 40.5 10 0.00036 21.6 1.1 14 57-70 11-24 (37)
6 3vmt_A Monofunctional glycosyl 38.6 14 0.00049 30.8 2.1 16 29-44 23-38 (263)
7 1q1s_A Large T antigen; import 34.7 11 0.00039 19.8 0.6 6 22-27 3-8 (26)
8 3arc_T Photosystem II reaction 29.1 34 0.0012 19.0 1.9 13 62-74 17-29 (32)
9 2l6w_A Beta-type platelet-deri 30.1 16 0.00055 21.3 0.0 9 66-74 30-38 (39)
10 2l0d_A Cell surface protein; s 23.9 2E+02 0.0068 20.4 7.7 45 104-153 23-68 (114)
11 1w8x_P Protein P16, protein S, 20.4 31 0.0011 23.7 0.8 16 56-71 12-27 (117)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.63 E-value=2e-07 Score=74.61 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=79.3
Q ss_pred cCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCC-eeeccCce
Q 043236 69 VKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQ-AQAKARRT 147 (222)
Q Consensus 69 Pk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~-f~q~~r~t 147 (222)
-+.|++++.++++.+++.. .+++.+.++|+|||.+.+.+...+..+.-+|..++++..+. +.++++++
T Consensus 42 ~~~PeV~v~~v~~~~~~l~-----------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~ 110 (174)
T 1yyc_A 42 IPTPEATVDDVDFKGVTRD-----------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGT 110 (174)
T ss_dssp SCCCEEEEEEEEEEEECSS-----------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEE
T ss_pred CCCCEEEEEEeEEeccccc-----------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCc
Confidence 3789999999999876432 25566778889999999999999999999999999998876 89999999
Q ss_pred EEEEEEEeeccccccCCcccccccc-cCeEEEEEEEEEE
Q 043236 148 LRMNVTVDLNPEKFLTVPSLKSDIL-SRSLNMSSYTRID 185 (222)
Q Consensus 148 ~~~~~~l~~~~~~l~~~~~l~~d~~-~G~v~l~~~~~v~ 185 (222)
+.+.+.+.+....+. .+.+++. .+.++.++++++.
T Consensus 111 ~~v~Vpv~v~~~~l~---~~~~~l~~~~~i~Y~L~g~L~ 146 (174)
T 1yyc_A 111 TVLDVPVKVAYSIAV---SLMKDMCTDWDIDYQLDIGLT 146 (174)
T ss_dssp EEEEEEEEESHHHHH---HTCCCCCSSEEECEEEEEEEE
T ss_pred EEEEEEEEEEHHHHH---HHHHhcCCCCccceEEEEEEE
Confidence 999999888654332 3334442 3466665544443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.27 E-value=4e-07 Score=71.20 Aligned_cols=103 Identities=20% Similarity=0.336 Sum_probs=77.3
Q ss_pred cCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCC-eeeccCce
Q 043236 69 VKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQ-AQAKARRT 147 (222)
Q Consensus 69 Pk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~-f~q~~r~t 147 (222)
-+.|++++.++++.+++. ..+++.+.++|+|||.+.+.+...+..++-+|..++++..+. +..+++++
T Consensus 19 ~~~P~v~v~~v~~~~~~~-----------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~ 87 (151)
T 1xo8_A 19 IPKPEGSVTDVDLKDVNR-----------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDM 87 (151)
T ss_dssp CCSCCCBCSEEEECCCTT-----------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSE
T ss_pred CCCCEEEEEEeEEeccCc-----------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCc
Confidence 367999998888865532 235667788889999999999999999999999999998755 89999999
Q ss_pred EEEEEEEeeccccccCCccccccc-ccCeEEEEEEEEEE
Q 043236 148 LRMNVTVDLNPEKFLTVPSLKSDI-LSRSLNMSSYTRID 185 (222)
Q Consensus 148 ~~~~~~l~~~~~~l~~~~~l~~d~-~~G~v~l~~~~~v~ 185 (222)
+.+.+.+.+....+ ..+.+++ ..+.++.++++++.
T Consensus 88 ~~v~vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 88 TALDIPVVVPYSIL---FNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EEEEECCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEEEEEHHHH---HHHHHhcccCCcccEEEEEEEE
Confidence 99999887764333 2333444 34677766655543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.15 E-value=5.5e-05 Score=58.00 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=66.3
Q ss_pred EEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEE-eCCeeeccCceEEEEEEEeeccccccCCcccccccccC-eE
Q 043236 99 NVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGH-IPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSR-SL 176 (222)
Q Consensus 99 n~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~-vp~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G-~v 176 (222)
...|.+.+.|.|||.+.+.++.....++..|..+|++. ...+..++.+++.+.+++.++..++. ..+.+.+..| .-
T Consensus 17 ~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~--~~~~~hi~nge~s 94 (136)
T 3but_A 17 QTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLR--EWWVTHIANGEKT 94 (136)
T ss_dssp EEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHT--THHHHHHHTTSEE
T ss_pred EEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhH--HHHHHHhhcCCce
Confidence 34566677889999999999999999999999999986 67899999999888888887755553 3444444444 33
Q ss_pred EEEEEEEEEEEEEEEE
Q 043236 177 NMSSYTRIDGKIKLIK 192 (222)
Q Consensus 177 ~l~~~~~v~grv~v~~ 192 (222)
.+++ +++.++.+++
T Consensus 95 ~l~i--~~~~~l~v~g 108 (136)
T 3but_A 95 KIRV--AIKPTIEIGG 108 (136)
T ss_dssp EEEE--EEEEEEECC-
T ss_pred EEEE--EEEEEEEeCC
Confidence 3444 4455555554
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=52.06 E-value=12 Score=19.74 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhe
Q 043236 54 LVAVVIIIVIATV 66 (222)
Q Consensus 54 ll~~i~lil~~lv 66 (222)
+++++..++.|+.
T Consensus 12 viav~aaVllylW 24 (26)
T 3j1r_A 12 LIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=40.52 E-value=10 Score=21.63 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=9.3
Q ss_pred HHHHHHhhheeecC
Q 043236 57 VVIIIVIATVFHVK 70 (222)
Q Consensus 57 ~i~lil~~lv~rPk 70 (222)
+++++.+|+..||+
T Consensus 11 ~~~~ifYFl~iRPQ 24 (37)
T 2rdd_B 11 VFGLIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhhH
Confidence 33455677888985
No 6
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=38.58 E-value=14 Score=30.78 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=2.1
Q ss_pred ccCCccccccccceee
Q 043236 29 MSGGKLTLQHRRRCLQ 44 (222)
Q Consensus 29 ~~~~~~~~~~~r~~~~ 44 (222)
+...|+||++.++..+
T Consensus 23 ~~~~~~kk~~~~~~~~ 38 (263)
T 3vmt_A 23 PVGKPPKKKKSKRILL 38 (263)
T ss_dssp ------------CCTT
T ss_pred ccCCchhhhhHHHHHH
Confidence 5666667776666544
No 7
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=34.74 E-value=11 Score=19.82 Aligned_cols=6 Identities=50% Similarity=0.401 Sum_probs=3.1
Q ss_pred Chhhhh
Q 043236 22 SDYEDQ 27 (222)
Q Consensus 22 ~~~~~~ 27 (222)
||+|.+
T Consensus 3 sdde~~ 8 (26)
T 1q1s_A 3 SDDEAA 8 (26)
T ss_pred cccccc
Confidence 556543
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=29.10 E-value=34 Score=19.02 Aligned_cols=13 Identities=23% Similarity=0.490 Sum_probs=7.0
Q ss_pred HhhheeecCCCEE
Q 043236 62 VIATVFHVKNPSI 74 (222)
Q Consensus 62 l~~lv~rPk~P~~ 74 (222)
++|.++-..+|++
T Consensus 17 iFFAI~FRePPri 29 (32)
T 3arc_T 17 FFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHTSCCCCC
T ss_pred HHHhhhhcCCCCC
Confidence 3444554666764
No 9
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=30.13 E-value=16 Score=21.29 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=5.3
Q ss_pred eeecCCCEE
Q 043236 66 VFHVKNPSI 74 (222)
Q Consensus 66 v~rPk~P~~ 74 (222)
+..-|.|++
T Consensus 30 ~~w~qKPrY 38 (39)
T 2l6w_A 30 MLWQKKPRY 38 (39)
Confidence 334677776
No 10
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=23.90 E-value=2e+02 Score=20.44 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=29.5
Q ss_pred EEEEEECCC-eeeEEEeCeEEEEEECCEEEEeEEeCCeeeccCceEEEEEE
Q 043236 104 ADVSVKNPN-YNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVT 153 (222)
Q Consensus 104 ~~v~v~NPN-~~~i~y~~~~~~v~Y~g~~vg~~~vp~f~q~~r~t~~~~~~ 153 (222)
+.++|+|.- ... ....+.++-+|..++...+++..-++ ++.+.++
T Consensus 23 i~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~LaaG~--s~tv~~~ 68 (114)
T 2l0d_A 23 MTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTSLESEN--STNVDFH 68 (114)
T ss_dssp EEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESCBCBTC--EEEEEEE
T ss_pred EEEEEEECCCCCC---CCEEEEEEECCEEEcceecccccCCC--EEEEEEE
Confidence 345779987 332 45677788899999998887754443 4444443
No 11
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=20.42 E-value=31 Score=23.74 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=10.9
Q ss_pred HHHHHHHhhheeecCC
Q 043236 56 AVVIIIVIATVFHVKN 71 (222)
Q Consensus 56 ~~i~lil~~lv~rPk~ 71 (222)
+.++++++|+.||-++
T Consensus 12 gglvliliwlwfrnrp 27 (117)
T 1w8x_P 12 GGLVLILIWLWFRNRP 27 (117)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CchhhHHHHHHHccCh
Confidence 4456667788888764
Done!