BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043238
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 258/475 (54%), Gaps = 83/475 (17%)
Query: 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRE------------ 52
A +IG+ GLAVMG+ LALN+ KG+ ++VYNR K DE L A +
Sbjct: 3 AKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFV 62
Query: 53 ---DRP----LHSQGLRPLHPT-PQIHHHRPLGET--SGTSTPSAVSMKPVRRVC----- 97
++P L + P T Q+ H G+ G +T + + + +
Sbjct: 63 NALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIH 122
Query: 98 FISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFV 157
FI S G A GPS+MPGG EA+ +R I + +AA VD PC TYIG G+G++V
Sbjct: 123 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYV 182
Query: 158 KMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVK 217
KMVHNGIEYGDMQLI++AY +LKHV G+ AEL E+F +WNKGEL S+L++ITADIF
Sbjct: 183 KMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFTKI 242
Query: 218 DEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAK 277
DE LVD ILDK G KGT KWT Q A +L V I S+ R+LS +K+ER +A+K
Sbjct: 243 DEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKASK 302
Query: 278 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL----------------------------- 308
VL +K D+ I+ VR+AL
Sbjct: 303 VLAGPAVKP------FEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRYG 356
Query: 309 -------------------IKNAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGLAIS 348
IK AY R+P L++L++D F +++V+R Q A R +V A
Sbjct: 357 DIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVATAAM 415
Query: 349 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEWTK 403
GI PG ++L+Y+D+YR A LPANL+QAQRD FGAH YER+D+ G FHTEW K
Sbjct: 416 RGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 470
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 194/475 (40%), Positives = 258/475 (54%), Gaps = 83/475 (17%)
Query: 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRE------------ 52
A +IG+ GLAVMG+ LALN+ KG+ ++VYNR K DE L A +
Sbjct: 4 AKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFV 63
Query: 53 ---DRP----LHSQGLRPLHPT-PQIHHHRPLGET--SGTSTPSAVSMKPVRRVC----- 97
++P L + P T Q+ H G+ G +T + + + +
Sbjct: 64 NALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIH 123
Query: 98 FISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFV 157
FI S G A GPS+MPGG EA+ +R I + +AA VD PC TYIG G+G++V
Sbjct: 124 FIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYV 183
Query: 158 KMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVK 217
KMVHNGIEYGDMQLI++AY +LKHV G+ AEL E+F +WNKGEL S+L++ITADIF
Sbjct: 184 KMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITADIFTKI 243
Query: 218 DEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAK 277
DE LVD ILDK G KGT KWT Q A +L V I S+ R+LS +K+ER +A+K
Sbjct: 244 DEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDERVKASK 303
Query: 278 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL----------------------------- 308
VL +K D+ I+ VR+AL
Sbjct: 304 VLAGPAVKP------FEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNLRYG 357
Query: 309 -------------------IKNAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGLAIS 348
IK AY R+P L++L++D F +++V+R Q A R +V A
Sbjct: 358 DIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVATAAM 416
Query: 349 AGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEWTK 403
GI PG ++L+Y+D+YR A LPANL+QAQRD FGAH YER+D+ G FHTEW K
Sbjct: 417 RGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 471
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 308 bits (790), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 260/475 (54%), Gaps = 86/475 (18%)
Query: 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPL 64
A + G+ G+AVMG+ LALNV +G+ +++YNRTTSK +E + H++ + ++ L
Sbjct: 2 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 60
Query: 65 HPTPQIHHHRPLGETSGTSTPSAV-SMKPV-------------------RR--------V 96
+ + L +G +T + + S+ P+ RR +
Sbjct: 61 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 120
Query: 97 CFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHV--DDGPCITYIGEGGSG 154
FI S G + A GPS+MPGG EAY+ + I +++AA D PC+ Y+G G+G
Sbjct: 121 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAG 180
Query: 155 NFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIF 214
++VKMVHNGIEYGDMQLI+++YD+LK + G+SNAE+ IF+EWN+GEL+S+L++IT ++
Sbjct: 181 HYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVL 240
Query: 215 KVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQE 274
K KD+ GEG +VDKILDK G KGT KWT + A +L V I S+ RY+S K+ER +
Sbjct: 241 KRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVK 300
Query: 275 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL-------------------------- 308
A+KVL L DKK +I+ +R+AL
Sbjct: 301 ASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDL 353
Query: 309 ----------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 346
I +A+ ++ L +L++D F + Q A R VV LA
Sbjct: 354 PYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLA 413
Query: 347 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEW 401
+ AG P +++SY+D+YR LPANL+QAQRD FGAH YER D+ G FH +W
Sbjct: 414 VQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 468
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 260/475 (54%), Gaps = 86/475 (18%)
Query: 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPL 64
A + G+ G+AVMG+ LALNV +G+ +++YNRTTSK +E + H++ + ++ L
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 62
Query: 65 HPTPQIHHHRPLGETSGTSTPSAV-SMKPV-------------------RR--------V 96
+ + L +G +T + + S+ P+ RR +
Sbjct: 63 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 122
Query: 97 CFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHV--DDGPCITYIGEGGSG 154
FI S G + A GPS+MPGG EAY+ + I +++AA D PC+ Y+G G+G
Sbjct: 123 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAG 182
Query: 155 NFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIF 214
++VKMVHNGIEYGDMQLI+++YD+LK + G+SNAE+ IF+EWN+GEL+S+L++IT ++
Sbjct: 183 HYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVL 242
Query: 215 KVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQE 274
K KD+ GEG +VDKILDK G KGT KWT + A +L V I S+ RY+S K+ER +
Sbjct: 243 KRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVK 302
Query: 275 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL-------------------------- 308
A+KVL L DKK +I+ +R+AL
Sbjct: 303 ASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDL 355
Query: 309 ----------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 346
I +A+ ++ L +L++D F + Q A R VV LA
Sbjct: 356 PYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLA 415
Query: 347 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEW 401
+ AG P +++SY+D+YR LPANL+QAQRD FGAH YER D+ G FH +W
Sbjct: 416 VQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 470
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 308 bits (789), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 260/475 (54%), Gaps = 86/475 (18%)
Query: 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPL 64
A + G+ G+AVMG+ LALNV +G+ +++YNRTTSK +E + H++ + ++ L
Sbjct: 3 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-KEHQDKNLVFTKTLEEF 61
Query: 65 HPTPQIHHHRPLGETSGTSTPSAV-SMKPV-------------------RR--------V 96
+ + L +G +T + + S+ P+ RR +
Sbjct: 62 VGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGI 121
Query: 97 CFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHV--DDGPCITYIGEGGSG 154
FI S G + A GPS+MPGG EAY+ + I +++AA D PC+ Y+G G+G
Sbjct: 122 NFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAG 181
Query: 155 NFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIF 214
++VKMVHNGIEYGDMQLI+++YD+LK + G+SNAE+ IF+EWN+GEL+S+L++IT ++
Sbjct: 182 HYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVL 241
Query: 215 KVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQE 274
K KD+ GEG +VDKILDK G KGT KWT + A +L V I S+ RY+S K+ER +
Sbjct: 242 KRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVK 301
Query: 275 AAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL-------------------------- 308
A+KVL L DKK +I+ +R+AL
Sbjct: 302 ASKVLSGPALD-------FSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDL 354
Query: 309 ----------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLA 346
I +A+ ++ L +L++D F + Q A R VV LA
Sbjct: 355 PYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLA 414
Query: 347 ISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEW 401
+ AG P +++SY+D+YR LPANL+QAQRD FGAH YER D+ G FH +W
Sbjct: 415 VQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDW 469
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 294 bits (752), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 183/472 (38%), Positives = 253/472 (53%), Gaps = 88/472 (18%)
Query: 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL-DRAHREDRPLHSQGLRPLHP 66
+IG+ G+AVMG+ LALN+ +G+ +S++NR+ K +E + + ++ P ++ ++
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYT--VKEFVE 74
Query: 67 TPQIHHHRPLGETSGTSTPSAV-SMKP-------------------VRRVCFISAWG--- 103
+ + L +G T +A+ S+KP +RR +SA G
Sbjct: 75 SLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF 134
Query: 104 -----SPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG-PCITYIGEGGSGNFV 157
S G A GPS+MPGG EAY + IL ++AA +DG PC+TYIG G+G++V
Sbjct: 135 IGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYV 194
Query: 158 KMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVK 217
KMVHNGIEYGDMQLI++AY +LK ++N ELA+ F EWN GEL S+L+ IT DIF K
Sbjct: 195 KMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKK 254
Query: 218 DEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAK 277
DE G LVD ILD+ KGT KWT Q A +L I S+ RY+S LK++R A+K
Sbjct: 255 DEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASK 313
Query: 278 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL----------------------------- 308
VL + Q G DK I+ VR+AL
Sbjct: 314 VLS----GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYG 366
Query: 309 -------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 349
I +AY NP +A+L++ P F + Q A R VV A+
Sbjct: 367 EIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQI 426
Query: 350 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEW 401
GI P A+++Y+D+YR A LPANL+QAQRD FGAH Y+RID+ G FHTEW
Sbjct: 427 GIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 293 bits (750), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 249/476 (52%), Gaps = 85/476 (17%)
Query: 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPL 64
A + I L GLAVMGQ L LN+ + GF + +NRT SKVD+ L + + L + L +
Sbjct: 1 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEM 60
Query: 65 HPTPQIHHHRPLGETSGTSTPSAV-----------------------SMKPVRR-----V 96
+ L +G + + + +M+ R +
Sbjct: 61 VSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120
Query: 97 CFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG-PCITYIGEGGSGN 155
F+ + S G AR+GPSLMPGG+ EA+ +I+ I Q +AA V G PC ++G+ G+G+
Sbjct: 121 LFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGH 180
Query: 156 FVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFK 215
FVKMVHNGIEYGDMQLI +AY ++K V G+ + E+A+ F+EWNK EL+SFL++ITA I K
Sbjct: 181 FVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILK 240
Query: 216 VKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEA 275
+D G+ L+ KI D G KGT KWT A E V I ++ R LS LK+ER +A
Sbjct: 241 FQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQA 299
Query: 276 AKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL--------------------------- 308
+K LK QN+ DKK ++D+R+AL
Sbjct: 300 SKKLKGP------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLN 353
Query: 309 ---------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 347
IK+A+ RNP L +L++D F + Q +WRR + +
Sbjct: 354 YGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGV 413
Query: 348 SAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSF-HTEWT 402
AGI P +LS++D YR A LPANL+QAQRD FGAH YE + +PG F HT WT
Sbjct: 414 QAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 469
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/472 (38%), Positives = 252/472 (53%), Gaps = 88/472 (18%)
Query: 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL-DRAHREDRPLHSQGLRPLHP 66
+IG+ G+AVMG+ LALN+ +G+ +S++NR+ K +E + + ++ P ++ ++
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYT--VKEFVE 74
Query: 67 TPQIHHHRPLGETSGTSTPSAV-SMKP-------------------VRRVCFISAWG--- 103
+ + L +G T +A+ S+KP +RR +SA G
Sbjct: 75 SLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF 134
Query: 104 -----SPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG-PCITYIGEGGSGNFV 157
S G A GPS+MPGG EAY + IL ++AA +DG PC+TYIG G+G++V
Sbjct: 135 IGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYV 194
Query: 158 KMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVK 217
KMVHNGIEYGDMQLI++AY +LK ++N ELA+ F EWN GEL S+L+ IT DIF K
Sbjct: 195 KMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKK 254
Query: 218 DEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAK 277
DE G LVD ILD+ KGT KWT Q A +L I S+ RY+S LK++R A+K
Sbjct: 255 DEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASK 313
Query: 278 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL----------------------------- 308
VL + Q G DK I+ VR+AL
Sbjct: 314 VLS----GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYG 366
Query: 309 -------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 349
I +A NP +A+L++ P F + Q A R VV A+
Sbjct: 367 EIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQN 426
Query: 350 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEW 401
GI P A+++Y+D+YR A LPANL+QAQRD FGAH Y+RID+ G FHTEW
Sbjct: 427 GIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW 478
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 182/472 (38%), Positives = 254/472 (53%), Gaps = 88/472 (18%)
Query: 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL-DRAHREDRPLHSQGLRPLHP 66
+IG+ G+AVMG+ LALN+ +G+ +SV+NR+ K +E + + ++ P ++ ++
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYT--VQEFVE 74
Query: 67 TPQIHHHRPLGETSGTSTPSAV-SMKP-------------------VRRVCFISAWG--- 103
+ + L +G T SA+ S+KP +RR +SA G
Sbjct: 75 SLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF 134
Query: 104 -----SPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG-PCITYIGEGGSGNFV 157
S G GPS+MPGG EAY + IL+++AA +DG PC+TYIG G+G++V
Sbjct: 135 IGTGVSGGEEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHYV 194
Query: 158 KMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVK 217
KMVHNGIEYGDMQLI++AY +LK +SN ELA+ F EWN+GEL S+L+ IT DIF K
Sbjct: 195 KMVHNGIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGELSSYLIDITKDIFTKK 254
Query: 218 DEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAK 277
DE G+ LVD ILD+ KGT KWT Q + +L I S+ RY+S LK++R A+K
Sbjct: 255 DEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAASK 313
Query: 278 VLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL----------------------------- 308
VL + Q G DK I+ VR+AL
Sbjct: 314 VLS----GPQAQPAG---DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYG 366
Query: 309 -------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 349
I +AY +N +A+L++ P F + Q A R VV A+
Sbjct: 367 EIAKIFRAGCIIRAQFLQKITDAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYAVQN 426
Query: 350 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEW 401
GI P A+++Y+D+YR A LPANL+QAQRD FGAH Y+R D+ G FHTEW
Sbjct: 427 GIPVPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEW 478
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 285 bits (728), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 249/480 (51%), Gaps = 85/480 (17%)
Query: 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQG 60
++ A + I L GLAVMGQ L LN+ + GF + +NRT SKVD+ L + + + +Q
Sbjct: 20 FQSMAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQS 79
Query: 61 LRPLHPTPQ------------------IHHHRPLGETSGTSTPSAVS-MKPVRRVC---- 97
L+ + + I PL +T S + R C
Sbjct: 80 LKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLK 139
Query: 98 -----FISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG-PCITYIGEG 151
F+ + S G AR+GPSLMPGG+ EA+ +I+ I Q +AA V G PC ++G+
Sbjct: 140 AKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDE 199
Query: 152 GSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITA 211
G+G+FVKMVHNGIEYGDMQLI +AY ++K V G++ E+A+ F++WNK EL+SFL++ITA
Sbjct: 200 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA 259
Query: 212 DIFKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEE 271
+I K +D G+ L+ KI D G KGT KWT A E V I ++ R LS LK+E
Sbjct: 260 NILKFQDTDGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 318
Query: 272 RQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL----------------------- 308
R +A+K LK Q DKK ++D+R+AL
Sbjct: 319 RIQASKKLKGP------QKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFG 372
Query: 309 -------------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVV 343
IK+A+ RNP L +L++D F + Q +WRR V
Sbjct: 373 WTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAV 432
Query: 344 GLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSF-HTEWT 402
+ AGI P +LS++D YR LPA+L+QAQRD FGAH YE + +PG F HT WT
Sbjct: 433 STGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWT 492
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 284 bits (727), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 249/478 (52%), Gaps = 85/478 (17%)
Query: 3 ASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLR 62
++A + I L GLAVMGQ L LN+ + GF + +NRT SKVD+ L + + + +Q L+
Sbjct: 1 SNAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLK 60
Query: 63 PLHPTPQ------------------IHHHRPLGETSGTSTPSAVS-MKPVRRVC------ 97
+ + I PL +T S + R C
Sbjct: 61 EMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAK 120
Query: 98 ---FISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG-PCITYIGEGGS 153
F+ + S G AR+GPSLMPGG+ EA+ +I+ I Q +AA V G PC ++G+ G+
Sbjct: 121 GILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGA 180
Query: 154 GNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADI 213
G+FVKMVHNGIEYGDMQLI +AY ++K V G++ E+A+ F++WNK EL+SFL++ITA+I
Sbjct: 181 GHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANI 240
Query: 214 FKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQ 273
K +D G+ L+ KI D G KGT KWT A E V I ++ R LS LK+ER
Sbjct: 241 LKFQDTDGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 299
Query: 274 EAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL------------------------- 308
+A+K LK Q DKK ++D+R+AL
Sbjct: 300 QASKKLKGP------QKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWT 353
Query: 309 -----------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 345
IK+A+ RNP L +L++D F + Q +WRR V
Sbjct: 354 LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVST 413
Query: 346 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSF-HTEWT 402
+ AGI P +LS++D YR LPA+L+QAQRD FGAH YE + +PG F HT WT
Sbjct: 414 GVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWT 471
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 242/481 (50%), Gaps = 96/481 (19%)
Query: 9 IGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL----------------DRAHRE 52
GL GLAVMGQ L LN + GF + YNRT SKVD L D +
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKL 72
Query: 53 DRP----LHSQGLRPLHPTPQIHHHRPLGETSGTSTPSAVSMKP----------VRRVCF 98
RP L + P+ I+ PL E S P + + F
Sbjct: 73 KRPRKVMLLVKAGAPVDAL--INQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILF 130
Query: 99 ISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVK 158
+ + S G AR+GPSLMPGGS EA+ +I++I Q ++A D PC ++G G+G++VK
Sbjct: 131 VGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVK 190
Query: 159 MVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKD 218
MVHNGIEYGDMQLI +AYD++K +GG ++ E++++F +WN G L+SFLV+IT DI K D
Sbjct: 191 MVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDD 250
Query: 219 EYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKV 278
G+ LV+KI+D G KGT KWT A +L + I ++ R LS LK ER A+KV
Sbjct: 251 VDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKV 309
Query: 279 LKEAGL-KDEVQNVGVHVDKKRLIDDVRQAL----------------------------- 308
L + KD V+ D+++ +DD+ QAL
Sbjct: 310 LPGPEVPKDAVK------DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNP 363
Query: 309 -------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA 349
I AY+ P+L +L+ + FA + + Q+ WR+ + LA +
Sbjct: 364 AIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTY 423
Query: 350 GISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGS--------FHTEW 401
GI TP +LS++D YR RLPANL+QAQRD FGAH + + S H W
Sbjct: 424 GIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIHINW 483
Query: 402 T 402
T
Sbjct: 484 T 484
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 131/473 (27%), Positives = 213/473 (45%), Gaps = 100/473 (21%)
Query: 21 LALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHS-----QGLRPLHPTPQIHHHRP 75
LALN+ EKGF+++V+NRT SK +E + P + + + +
Sbjct: 16 LALNIAEKGFKVAVFNRTYSKSEEFMK--ANASAPFAGNLKAFETMEAFAASLKKPRKAL 73
Query: 76 LGETSGTSTPSAVS-MKPV-------------------RRVCFISAWG--------SPGA 107
+ +G +T S + +K V RR + A G S G
Sbjct: 74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGE 133
Query: 108 RKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG-PCITYIGEGGSGNFVKMVHNGIEY 166
AR GP+ PGG+ + IR I++ AA DDG PC+T G GG+G+ VKM HN EY
Sbjct: 134 EGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEY 193
Query: 167 GDMQLISQAYDVLKHVGGVSNAELAEIFDEW-NKGELESFLVQITADIFKVKDEYGEGEL 225
+Q+ + +D+L+ + G++N E+A + ++W +K L+S+++ I+ + KD+ G L
Sbjct: 194 AILQIWGEVFDILRAM-GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGS-YL 251
Query: 226 VDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAA--------- 276
+ ++D+ G KGT W+ Q+A E+ V A ++ ++ R + K ERQ A
Sbjct: 252 TEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQS 311
Query: 277 ----------------------------------KVLKEAGLKDEVQNVGVHVDKKRLID 302
+ L+E D+V N G+++ I
Sbjct: 312 PGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREM---DKVHNFGLNLPAT--IA 366
Query: 303 DVRQALI---------KNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISA-GIS 352
R I A+++NPN+++L+ F E+ +R +V L S +S
Sbjct: 367 TFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMVALITSKLEVS 424
Query: 353 TPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHAYERIDRPGSFHTEWTKL 404
P + ASL+Y L LV QRD+FG H YER+D+ G +W +L
Sbjct: 425 IPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47
S + +G GL +MG+ +++N+ + GF+++V+NRT SK DE ++
Sbjct: 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE 62
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 27/141 (19%)
Query: 147 YIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHV-----GGVSNAE------------ 189
+ G G+G+FVK VHNGIEYG ++ ++L H G ++AE
Sbjct: 199 HCGPSGAGHFVKXVHNGIEYGLXAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRY 258
Query: 190 ---LAEIFDEWNKGE-LESFLVQITADIFKVKDEYGEGELVDKILDKTGMKGTRKWTIQQ 245
LA+I + W +G + S+L+ ++A + D E ++ D G +WT+
Sbjct: 259 DLDLADITEVWRRGSVISSWLLDLSAT--ALLDSPDLQEFQGRVSD----SGEGRWTVAA 312
Query: 246 AAELLVAALTIAASLDCRYLS 266
A + V A ++++L R+ S
Sbjct: 313 AIDEGVPAHVLSSALYERFSS 333
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 37/234 (15%)
Query: 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDR------------- 54
+IG GL +MG + N+ + G ++V+NRT K D + R R
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 55 -----PLHSQGLRPLHPTPQIHHHRPLGETSGTSTPSAVSMKPVRRVC------FISAWG 103
P ++ L L P+ + RP ST A ++ + +V F+ A
Sbjct: 92 ACVSDPKAAKDL-VLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPV 150
Query: 104 SPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHN 162
S + + G ++ G Y + Q + G ++GE G+ + ++ N
Sbjct: 151 SGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM------GKTSFFLGEVGNAAKMMLIVN 204
Query: 163 GIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELES-FLVQITADIFK 215
++ M I++ L V G S L +I N+G+L S FL Q +I +
Sbjct: 205 MVQGSFMATIAEGL-TLAQVTGQSQQTLLDIL---NQGQLASIFLDQKCQNILQ 254
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKV 42
++ G GL +MG +A N+ GF ++V+NR +K
Sbjct: 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKC 37
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDE 44
+ G GL +MG +A N+ + G ++++NR+ K +E
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEE 39
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 296 DKKRLIDDVRQALIKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAI 347
D K DDV LI Q NP+ L++ E R M+ R A R V I
Sbjct: 101 DFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVI 152
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 36/182 (19%)
Query: 8 RIGLAGLAVMGQKLALNVPEKGFQISVYN-----------RTTSKVDETLDRAHREDRPL 56
+IG GL MG+ +A+N+ ++G + ++ + + A D
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 57 HSQGLRPLHPTPQIHHHRPLG------------ETSGTSTPSAVSMKPV---RRVCFISA 101
S P + + P G + S S S + M V + + ++ A
Sbjct: 66 TS---LPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA 122
Query: 102 WGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMV 160
S G + A G ++M G S + I+ +L + G I ++G+ G+G+ VK+V
Sbjct: 123 PVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI------GKDIYHVGDTGAGDAVKIV 176
Query: 161 HN 162
+N
Sbjct: 177 NN 178
>pdb|1I6V|A Chain A, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
pdb|1I6V|B Chain B, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 314
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 236 KGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHV 295
KG ++ + ++ +L + L L R L LKEE E+ + L LKD G+
Sbjct: 240 KGEKRESAEEDLDLPLEEL----GLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGI-- 293
Query: 296 DKKRLIDDVRQALIKNAY 313
+R ++++RQAL K +
Sbjct: 294 -GERSLEEIRQALAKKGF 310
>pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0K|B Chain B, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0N|A Chain A, Ipp:dmapp Isomerase Type Ii, Fmn Complex
pdb|1P0N|B Chain B, Ipp:dmapp Isomerase Type Ii, Fmn Complex
Length = 349
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 76 LGETSGTSTPSAVSMKPVRRVCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRV 135
+G GT+ +++ R++ F ++WG A S P + A ++D L V
Sbjct: 208 IGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALD-V 266
Query: 136 AAHVDDGPCITYIGEGGSGNFVKMVHNGIEYG---DMQLISQAYDVLKHVGG 184
A + G T G +G+F+K + + E G ++QLI + ++ V G
Sbjct: 267 AKAIALGASCT----GMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLG 314
>pdb|1L9U|A Chain A, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|B Chain B, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|J Chain J, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|K Chain K, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|A Chain A, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1L9Z|B Chain B, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1YNJ|A Chain A, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNJ|B Chain B, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|A Chain A, Taq Rna Polymerase-rifampicin Complex
pdb|1YNN|B Chain B, Taq Rna Polymerase-rifampicin Complex
pdb|2GHO|A Chain A, Recombinant Thermus Aquaticus Rna Polymerase For
Structural Studies
pdb|2GHO|B Chain B, Recombinant Thermus Aquaticus Rna Polymerase For
Structural Studies
Length = 314
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 236 KGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHV 295
KG ++ + ++ +L + L L R L LKEE E+ + L LKD G+
Sbjct: 240 KGEKRESAEEDLDLPLEEL----GLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGI-- 293
Query: 296 DKKRLIDDVRQALIKNAY 313
+R ++++RQAL K +
Sbjct: 294 -GERSLEEIRQALAKKGF 310
>pdb|1HQM|A Chain A, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
pdb|1HQM|B Chain B, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 313
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 236 KGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHV 295
KG ++ + ++ +L + L L R L LKEE E+ + L LKD G+
Sbjct: 239 KGEKRESAEEDLDLPLEEL----GLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGI-- 292
Query: 296 DKKRLIDDVRQALIKNAY 313
+R ++++RQAL K +
Sbjct: 293 -GERSLEEIRQALAKKGF 309
>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
pdb|3F6T|B Chain B, Crystal Structure Of Aspartate Aminotransferase (E.C.
2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus
Ncfm At 2.15 A Resolution
Length = 533
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 293 VHVDKKRLIDDVRQALIK-NAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGI 351
+ +++K + DD L K Q + +S+V+DP+ + + R A R +GL +AG+
Sbjct: 325 IALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPD-KXKFIDRLCADSRSIGLYHTAGL 383
Query: 352 STP 354
STP
Sbjct: 384 STP 386
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVD 43
+I GL +G +A + E G+++ V+NRT SK +
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAE 42
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 167 GDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDEYGEGELV 226
GD+Q I D L +G ++ L IF + + + TAD F+V +G+ E +
Sbjct: 173 GDLQGIIDHLDYLVDLG-ITGIYLTPIFRSPSNHKYD------TADYFEVDPHFGDKETL 225
Query: 227 DKILDKTGMKGTR 239
++D+ KG R
Sbjct: 226 KTLIDRCHEKGIR 238
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 167 GDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDEYGEGELV 226
GD+Q I D L +G ++ L IF + + + TAD F+V +G+ E +
Sbjct: 173 GDLQGIIDHLDYLVDLG-ITGIYLTPIFRSPSNHKYD------TADYFEVDPHFGDKETL 225
Query: 227 DKILDKTGMKGTR 239
++D+ KG R
Sbjct: 226 KTLIDRCHEKGIR 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,022,383
Number of Sequences: 62578
Number of extensions: 559848
Number of successful extensions: 1674
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 64
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)