Query 043238
Match_columns 426
No_of_seqs 375 out of 3044
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 1E-123 3E-128 912.1 32.6 391 5-405 2-471 (473)
2 KOG2653 6-phosphogluconate deh 100.0 1E-118 3E-123 864.0 29.2 406 1-417 1-487 (487)
3 PTZ00142 6-phosphogluconate de 100.0 2.6E-96 6E-101 763.1 37.0 391 6-402 1-470 (470)
4 PLN02350 phosphogluconate dehy 100.0 7.2E-96 2E-100 760.8 39.2 407 1-408 1-485 (493)
5 TIGR00873 gnd 6-phosphoglucona 100.0 2E-93 4.3E-98 741.6 36.2 386 8-403 1-467 (467)
6 PRK09287 6-phosphogluconate de 100.0 3.8E-93 8.3E-98 736.8 35.5 376 17-403 1-457 (459)
7 PF00393 6PGD: 6-phosphoglucon 100.0 7.4E-74 1.6E-78 553.9 24.1 243 154-402 1-291 (291)
8 COG1023 Gnd Predicted 6-phosph 100.0 3.4E-55 7.4E-60 405.6 20.3 265 7-315 1-298 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 100.0 2.4E-52 5.2E-57 413.1 26.7 269 7-390 1-297 (298)
10 PRK09599 6-phosphogluconate de 100.0 1.3E-45 2.7E-50 365.6 26.6 272 7-391 1-300 (301)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 3.4E-41 7.3E-46 327.7 22.9 240 7-267 1-267 (286)
12 PRK12490 6-phosphogluconate de 100.0 4.1E-40 8.8E-45 325.9 25.6 272 7-315 1-298 (299)
13 KOG0409 Predicted dehydrogenas 100.0 5.1E-39 1.1E-43 307.8 20.6 243 6-269 35-304 (327)
14 PRK15059 tartronate semialdehy 100.0 8E-35 1.7E-39 287.2 23.8 234 8-261 2-261 (292)
15 PRK15461 NADH-dependent gamma- 100.0 3.2E-33 6.9E-38 276.4 23.2 236 7-261 2-264 (296)
16 TIGR01692 HIBADH 3-hydroxyisob 100.0 1.2E-32 2.5E-37 271.2 21.0 233 11-261 1-265 (288)
17 PLN02858 fructose-bisphosphate 100.0 2.2E-32 4.8E-37 314.2 24.8 238 5-261 3-269 (1378)
18 PRK11559 garR tartronate semia 100.0 2.6E-30 5.6E-35 255.1 23.4 238 5-261 1-264 (296)
19 PLN02858 fructose-bisphosphate 100.0 2.2E-30 4.7E-35 297.9 23.6 242 1-261 319-589 (1378)
20 TIGR01505 tartro_sem_red 2-hyd 100.0 9.1E-30 2E-34 250.8 23.8 235 8-261 1-261 (291)
21 PF03446 NAD_binding_2: NAD bi 99.9 4E-26 8.7E-31 206.6 6.1 131 6-150 1-163 (163)
22 PRK09287 6-phosphogluconate de 99.9 8.6E-25 1.9E-29 227.1 12.4 166 121-319 270-448 (459)
23 PTZ00142 6-phosphogluconate de 99.9 7.9E-24 1.7E-28 220.7 13.3 166 121-319 281-462 (470)
24 TIGR00873 gnd 6-phosphoglucona 99.9 7.9E-24 1.7E-28 220.7 12.9 166 121-319 277-456 (467)
25 COG0362 Gnd 6-phosphogluconate 99.9 1.2E-23 2.6E-28 207.9 11.9 148 150-340 312-468 (473)
26 PF00393 6PGD: 6-phosphoglucon 99.9 1.9E-22 4.1E-27 195.9 12.4 142 151-321 136-285 (291)
27 KOG2653 6-phosphogluconate deh 99.8 2.4E-21 5.3E-26 188.8 10.1 138 153-320 320-466 (487)
28 TIGR03026 NDP-sugDHase nucleot 99.8 3E-20 6.4E-25 191.9 18.5 228 7-261 1-291 (411)
29 PLN02350 phosphogluconate dehy 99.8 3E-20 6.6E-25 194.3 11.4 147 153-341 326-480 (493)
30 PRK14618 NAD(P)H-dependent gly 99.8 1.7E-19 3.8E-24 180.7 11.8 248 1-261 1-305 (328)
31 PRK11064 wecC UDP-N-acetyl-D-m 99.8 9.9E-18 2.1E-22 173.2 16.3 182 6-194 3-247 (415)
32 PRK00094 gpsA NAD(P)H-dependen 99.7 1.6E-17 3.4E-22 165.6 13.6 237 7-261 2-307 (325)
33 PRK14619 NAD(P)H-dependent gly 99.7 4.2E-17 9.1E-22 162.3 11.6 224 6-261 4-283 (308)
34 PRK06129 3-hydroxyacyl-CoA deh 99.7 4.2E-16 9E-21 155.1 18.7 227 6-261 2-274 (308)
35 PRK15182 Vi polysaccharide bio 99.6 2E-15 4.3E-20 156.4 15.8 230 1-261 1-288 (425)
36 PRK15057 UDP-glucose 6-dehydro 99.6 7.5E-15 1.6E-19 150.4 14.7 181 7-194 1-232 (388)
37 PLN02688 pyrroline-5-carboxyla 99.5 2.7E-13 5.9E-18 131.8 18.5 167 7-194 1-201 (266)
38 PRK07531 bifunctional 3-hydrox 99.5 4.4E-14 9.6E-19 149.3 13.1 177 5-203 3-223 (495)
39 PRK08229 2-dehydropantoate 2-r 99.5 1.2E-13 2.5E-18 139.0 14.4 242 5-261 1-311 (341)
40 PRK07679 pyrroline-5-carboxyla 99.5 3.2E-13 7E-18 132.5 15.4 169 7-195 4-207 (279)
41 PRK12557 H(2)-dependent methyl 99.5 2.6E-13 5.6E-18 136.8 14.6 174 7-193 1-235 (342)
42 PRK08268 3-hydroxy-acyl-CoA de 99.5 1.3E-12 2.9E-17 138.3 16.5 165 6-194 7-222 (507)
43 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.4 3E-12 6.6E-17 135.3 15.6 167 5-195 4-221 (503)
44 PRK07417 arogenate dehydrogena 99.4 8.3E-13 1.8E-17 129.6 10.7 155 7-169 1-186 (279)
45 PRK09260 3-hydroxybutyryl-CoA 99.4 1.4E-11 3E-16 121.5 16.4 163 7-193 2-216 (288)
46 PRK08507 prephenate dehydrogen 99.3 2.5E-11 5.4E-16 118.9 14.2 172 7-193 1-205 (275)
47 PF14833 NAD_binding_11: NAD-b 99.3 2.8E-11 6E-16 104.3 12.7 103 152-267 1-104 (122)
48 PRK06130 3-hydroxybutyryl-CoA 99.3 7E-11 1.5E-15 117.6 14.3 169 6-194 4-216 (311)
49 PRK07530 3-hydroxybutyryl-CoA 99.2 1.6E-10 3.4E-15 114.1 14.0 168 6-193 4-218 (292)
50 PLN02545 3-hydroxybutyryl-CoA 99.2 4.7E-10 1E-14 110.9 16.6 165 6-193 4-218 (295)
51 PRK07819 3-hydroxybutyryl-CoA 99.2 3.4E-10 7.5E-15 111.6 15.4 172 1-193 1-221 (286)
52 PRK11199 tyrA bifunctional cho 99.2 4.8E-10 1E-14 114.7 16.3 161 5-192 97-279 (374)
53 PRK06035 3-hydroxyacyl-CoA deh 99.2 2.2E-10 4.7E-15 113.2 12.0 168 6-193 3-220 (291)
54 PRK08655 prephenate dehydrogen 99.1 1E-08 2.2E-13 107.0 22.8 173 7-193 1-201 (437)
55 PRK07502 cyclohexadienyl dehyd 99.1 9.6E-10 2.1E-14 109.4 11.5 141 1-154 1-183 (307)
56 COG0240 GpsA Glycerol-3-phosph 99.0 6.9E-10 1.5E-14 110.0 8.9 242 6-259 1-304 (329)
57 PRK11880 pyrroline-5-carboxyla 99.0 4.9E-08 1.1E-12 94.9 20.9 225 5-257 1-252 (267)
58 PRK05808 3-hydroxybutyryl-CoA 99.0 1.2E-08 2.5E-13 100.4 14.6 168 6-193 3-217 (282)
59 PRK06476 pyrroline-5-carboxyla 98.9 8.9E-09 1.9E-13 99.9 13.0 161 7-194 1-193 (258)
60 PRK07680 late competence prote 98.9 1.3E-08 2.8E-13 99.6 13.9 167 7-194 1-202 (273)
61 PRK12491 pyrroline-5-carboxyla 98.9 2.1E-08 4.6E-13 98.2 14.2 170 5-194 1-204 (272)
62 PRK14620 NAD(P)H-dependent gly 98.8 2.3E-07 4.9E-12 93.0 18.3 42 7-48 1-42 (326)
63 PRK08293 3-hydroxybutyryl-CoA 98.8 4.3E-08 9.3E-13 96.7 12.8 171 6-193 3-220 (287)
64 PLN02353 probable UDP-glucose 98.8 1.5E-07 3.3E-12 98.9 16.8 182 6-193 1-250 (473)
65 PRK07066 3-hydroxybutyryl-CoA 98.8 8.2E-08 1.8E-12 96.2 14.0 172 6-202 7-225 (321)
66 PRK06545 prephenate dehydrogen 98.8 4.5E-08 9.8E-13 99.7 10.9 144 7-161 1-185 (359)
67 PRK06522 2-dehydropantoate 2-r 98.7 5.7E-07 1.2E-11 88.7 17.8 43 7-49 1-43 (304)
68 PRK12439 NAD(P)H-dependent gly 98.7 3.6E-08 7.8E-13 99.7 8.5 243 5-261 6-312 (341)
69 PTZ00345 glycerol-3-phosphate 98.7 2.3E-07 5E-12 94.5 14.0 248 6-261 11-338 (365)
70 PRK12921 2-dehydropantoate 2-r 98.7 3.7E-07 8.1E-12 90.2 14.5 42 7-49 1-42 (305)
71 COG0345 ProC Pyrroline-5-carbo 98.6 7E-07 1.5E-11 86.9 14.6 169 6-193 1-200 (266)
72 PRK12490 6-phosphogluconate de 98.6 3.3E-08 7.1E-13 98.2 5.3 51 338-390 247-298 (299)
73 COG0677 WecC UDP-N-acetyl-D-ma 98.6 6.1E-07 1.3E-11 90.5 13.1 183 4-193 7-249 (436)
74 PRK06249 2-dehydropantoate 2-r 98.6 2E-06 4.4E-11 85.8 16.5 45 3-49 2-46 (313)
75 PRK08269 3-hydroxybutyryl-CoA 98.6 8E-07 1.7E-11 88.9 13.1 151 17-193 1-214 (314)
76 PLN02256 arogenate dehydrogena 98.5 9.2E-06 2E-10 81.0 17.7 139 3-152 33-206 (304)
77 PRK05479 ketol-acid reductoiso 98.4 4.3E-06 9.4E-11 83.9 14.3 177 6-190 17-224 (330)
78 TIGR03376 glycerol3P_DH glycer 98.4 7.5E-07 1.6E-11 90.1 8.9 243 8-261 1-327 (342)
79 PLN02712 arogenate dehydrogena 98.4 8.4E-07 1.8E-11 97.1 9.3 139 3-151 366-538 (667)
80 PRK07634 pyrroline-5-carboxyla 98.4 4.7E-06 1E-10 79.8 13.3 165 7-194 5-206 (245)
81 COG1004 Ugd Predicted UDP-gluc 98.4 3.4E-05 7.4E-10 78.2 19.0 230 7-261 1-289 (414)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 4.4E-07 9.6E-12 81.6 5.0 79 8-86 1-92 (157)
83 PRK14806 bifunctional cyclohex 98.3 3.7E-06 8.1E-11 93.3 12.6 137 6-150 3-177 (735)
84 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 3.4E-06 7.3E-11 79.0 9.7 121 7-136 29-173 (200)
85 TIGR01724 hmd_rel H2-forming N 98.3 1.4E-05 2.9E-10 79.3 14.0 128 7-136 1-186 (341)
86 PRK06928 pyrroline-5-carboxyla 98.3 5.4E-06 1.2E-10 81.5 10.8 164 7-194 2-205 (277)
87 PF03807 F420_oxidored: NADP o 98.3 1.2E-06 2.5E-11 71.7 5.0 73 8-83 1-81 (96)
88 COG0287 TyrA Prephenate dehydr 98.3 1.6E-05 3.4E-10 78.2 13.8 140 5-152 2-173 (279)
89 PTZ00431 pyrroline carboxylate 98.2 1.7E-05 3.6E-10 77.3 13.5 166 7-194 4-197 (260)
90 TIGR01915 npdG NADPH-dependent 98.2 3.9E-06 8.5E-11 79.5 8.8 42 7-48 1-43 (219)
91 PRK05708 2-dehydropantoate 2-r 98.1 6.2E-05 1.4E-09 75.0 15.3 44 5-48 1-44 (305)
92 COG1250 FadB 3-hydroxyacyl-CoA 98.1 2E-05 4.4E-10 78.2 10.1 171 5-201 2-222 (307)
93 TIGR00465 ilvC ketol-acid redu 98.0 5.6E-05 1.2E-09 75.7 11.3 44 6-49 3-47 (314)
94 COG1893 ApbA Ketopantoate redu 98.0 0.00023 5E-09 71.1 15.4 78 7-86 1-90 (307)
95 PLN02712 arogenate dehydrogena 98.0 3.5E-05 7.6E-10 84.5 10.2 137 4-150 50-220 (667)
96 PRK11730 fadB multifunctional 97.9 0.00011 2.3E-09 81.5 12.2 166 6-194 313-527 (715)
97 PRK08818 prephenate dehydrogen 97.9 0.00015 3.2E-09 74.2 12.1 135 6-160 4-165 (370)
98 TIGR02441 fa_ox_alpha_mit fatt 97.8 0.00019 4.1E-09 79.7 12.7 166 6-194 335-549 (737)
99 TIGR02437 FadB fatty oxidation 97.8 0.00016 3.5E-09 80.1 11.8 166 5-193 312-526 (714)
100 COG2085 Predicted dinucleotide 97.8 7.6E-05 1.6E-09 69.9 7.8 41 6-46 1-41 (211)
101 PF02737 3HCDH_N: 3-hydroxyacy 97.8 3.2E-05 6.8E-10 71.3 5.1 38 8-45 1-38 (180)
102 PRK13403 ketol-acid reductoiso 97.8 4.6E-05 1E-09 76.0 6.3 44 6-49 16-59 (335)
103 PF03721 UDPG_MGDP_dh_N: UDP-g 97.7 2.3E-05 4.9E-10 72.6 3.8 41 7-47 1-41 (185)
104 PRK14194 bifunctional 5,10-met 97.6 9.2E-05 2E-09 73.4 5.4 41 6-46 159-200 (301)
105 TIGR02440 FadJ fatty oxidation 97.6 0.00058 1.3E-08 75.5 12.0 166 6-194 304-519 (699)
106 PF10727 Rossmann-like: Rossma 97.5 4E-05 8.8E-10 66.6 1.6 80 4-85 8-90 (127)
107 PRK11154 fadJ multifunctional 97.5 0.00072 1.6E-08 75.0 11.5 169 6-193 309-523 (708)
108 PRK12480 D-lactate dehydrogena 97.5 0.0002 4.3E-09 72.3 6.2 37 7-43 147-183 (330)
109 PRK07574 formate dehydrogenase 97.4 0.0003 6.6E-09 72.3 6.5 80 7-94 193-285 (385)
110 PRK13302 putative L-aspartate 97.3 0.0004 8.6E-09 68.2 6.4 48 1-48 1-51 (271)
111 PLN03139 formate dehydrogenase 97.3 0.00041 8.9E-09 71.3 6.4 81 6-94 199-292 (386)
112 PRK15469 ghrA bifunctional gly 97.3 0.00032 6.8E-09 70.3 4.9 78 7-94 137-227 (312)
113 cd01065 NAD_bind_Shikimate_DH 97.2 0.00057 1.2E-08 60.5 5.5 44 6-49 19-63 (155)
114 PRK13243 glyoxylate reductase; 97.1 0.00067 1.5E-08 68.5 5.5 36 6-41 150-185 (333)
115 PF02826 2-Hacid_dh_C: D-isome 97.1 0.00084 1.8E-08 61.6 5.6 42 6-47 36-77 (178)
116 PF01488 Shikimate_DH: Shikima 97.1 0.00073 1.6E-08 59.2 4.9 46 4-49 10-56 (135)
117 TIGR00745 apbA_panE 2-dehydrop 97.0 0.017 3.7E-07 56.4 14.4 32 17-49 2-33 (293)
118 KOG2380 Prephenate dehydrogena 97.0 0.003 6.5E-08 63.0 8.7 73 7-85 53-130 (480)
119 PRK14188 bifunctional 5,10-met 96.9 0.0013 2.9E-08 65.2 5.6 35 6-40 158-194 (296)
120 PF07991 IlvN: Acetohydroxy ac 96.9 0.00064 1.4E-08 61.3 2.8 44 6-49 4-48 (165)
121 PRK08605 D-lactate dehydrogena 96.8 0.0021 4.5E-08 64.9 5.9 35 7-41 147-182 (332)
122 TIGR02853 spore_dpaA dipicolin 96.7 0.0022 4.7E-08 63.5 5.3 43 7-49 152-194 (287)
123 PRK06141 ornithine cyclodeamin 96.6 0.0024 5.2E-08 64.0 5.1 44 5-48 124-169 (314)
124 PRK13304 L-aspartate dehydroge 96.6 0.0024 5.1E-08 62.5 4.8 42 7-48 2-46 (265)
125 PRK06436 glycerate dehydrogena 96.6 0.0024 5.2E-08 63.7 4.5 35 6-40 122-156 (303)
126 TIGR01327 PGDH D-3-phosphoglyc 96.5 0.0046 1E-07 66.3 6.6 33 7-39 139-171 (525)
127 PRK06223 malate dehydrogenase; 96.5 0.0038 8.2E-08 62.1 5.4 39 6-44 2-41 (307)
128 COG0569 TrkA K+ transport syst 96.5 0.0033 7.2E-08 60.0 4.8 41 7-47 1-41 (225)
129 PRK08306 dipicolinate synthase 96.5 0.0042 9.1E-08 61.7 5.4 44 6-49 152-195 (296)
130 PRK13581 D-3-phosphoglycerate 96.4 0.0053 1.1E-07 65.8 6.4 35 6-40 140-174 (526)
131 KOG2304 3-hydroxyacyl-CoA dehy 96.3 0.0035 7.7E-08 59.3 3.8 40 6-45 11-50 (298)
132 COG0111 SerA Phosphoglycerate 96.3 0.0043 9.4E-08 62.4 4.4 36 6-41 142-177 (324)
133 TIGR00507 aroE shikimate 5-deh 96.2 0.0067 1.4E-07 59.3 5.4 43 6-48 117-159 (270)
134 PF02558 ApbA: Ketopantoate re 96.2 0.0076 1.6E-07 53.1 4.8 41 9-50 1-41 (151)
135 PLN00203 glutamyl-tRNA reducta 96.2 0.0067 1.5E-07 64.8 5.3 43 6-48 266-309 (519)
136 PLN02928 oxidoreductase family 96.1 0.0056 1.2E-07 62.3 4.4 35 6-40 159-193 (347)
137 cd05213 NAD_bind_Glutamyl_tRNA 96.1 0.0081 1.8E-07 60.1 5.3 43 6-48 178-221 (311)
138 TIGR01763 MalateDH_bact malate 96.1 0.01 2.3E-07 59.2 6.0 37 7-43 2-39 (305)
139 TIGR02371 ala_DH_arch alanine 96.0 0.0081 1.7E-07 60.5 5.0 43 6-48 128-172 (325)
140 TIGR01035 hemA glutamyl-tRNA r 96.0 0.0099 2.1E-07 61.9 5.7 44 5-48 179-223 (417)
141 PRK00257 erythronate-4-phospha 96.0 0.0069 1.5E-07 62.3 4.4 35 6-40 116-150 (381)
142 TIGR02354 thiF_fam2 thiamine b 95.9 0.0063 1.4E-07 57.0 3.4 34 5-38 20-54 (200)
143 PRK15438 erythronate-4-phospha 95.8 0.0095 2.1E-07 61.2 4.5 34 6-39 116-149 (378)
144 PF02153 PDH: Prephenate dehyd 95.8 0.11 2.4E-06 50.5 11.6 122 21-150 1-158 (258)
145 cd05291 HicDH_like L-2-hydroxy 95.8 0.013 2.9E-07 58.3 5.3 41 7-47 1-43 (306)
146 PRK14179 bifunctional 5,10-met 95.7 0.012 2.6E-07 58.1 4.2 35 6-40 158-193 (284)
147 PRK15409 bifunctional glyoxyla 95.6 0.025 5.3E-07 57.0 6.3 79 7-95 146-238 (323)
148 PRK00045 hemA glutamyl-tRNA re 95.5 0.02 4.3E-07 59.8 5.6 43 6-48 182-225 (423)
149 cd05292 LDH_2 A subgroup of L- 95.4 0.018 3.9E-07 57.5 4.7 38 7-44 1-40 (308)
150 COG1052 LdhA Lactate dehydroge 95.4 0.034 7.4E-07 56.0 6.7 36 5-40 145-180 (324)
151 PRK13301 putative L-aspartate 95.4 0.022 4.9E-07 55.5 5.1 44 5-48 1-48 (267)
152 PF01408 GFO_IDH_MocA: Oxidore 95.4 0.021 4.6E-07 48.1 4.3 42 8-49 2-46 (120)
153 PRK00258 aroE shikimate 5-dehy 95.4 0.027 5.8E-07 55.4 5.6 44 6-49 123-167 (278)
154 PTZ00082 L-lactate dehydrogena 95.3 0.026 5.7E-07 56.7 5.3 37 6-42 6-43 (321)
155 TIGR01809 Shik-DH-AROM shikima 95.2 0.029 6.3E-07 55.3 5.2 43 6-48 125-168 (282)
156 PRK12549 shikimate 5-dehydroge 95.2 0.029 6.3E-07 55.4 5.1 42 7-48 128-170 (284)
157 cd05191 NAD_bind_amino_acid_DH 95.1 0.031 6.6E-07 44.9 4.3 32 6-37 23-55 (86)
158 COG0059 IlvC Ketol-acid reduct 95.1 0.035 7.6E-07 54.8 5.4 75 6-85 18-97 (338)
159 COG0373 HemA Glutamyl-tRNA red 95.1 0.03 6.5E-07 57.9 5.1 45 5-49 177-222 (414)
160 PRK13940 glutamyl-tRNA reducta 95.1 0.03 6.5E-07 58.3 5.1 44 6-49 181-225 (414)
161 PRK11790 D-3-phosphoglycerate 95.1 0.024 5.3E-07 58.9 4.4 33 7-39 152-184 (409)
162 cd01339 LDH-like_MDH L-lactate 95.0 0.03 6.4E-07 55.6 4.8 35 9-43 1-36 (300)
163 PF00056 Ldh_1_N: lactate/mala 95.0 0.042 9.2E-07 48.5 5.2 40 7-46 1-43 (141)
164 PRK00066 ldh L-lactate dehydro 94.9 0.046 1E-06 54.8 5.8 46 1-46 1-48 (315)
165 PRK09310 aroDE bifunctional 3- 94.9 0.04 8.7E-07 58.4 5.6 43 6-48 332-374 (477)
166 PRK08618 ornithine cyclodeamin 94.8 0.047 1E-06 54.9 5.7 43 6-48 127-171 (325)
167 PRK08163 salicylate hydroxylas 94.8 0.034 7.3E-07 56.8 4.8 36 5-40 3-38 (396)
168 PRK07236 hypothetical protein; 94.7 0.04 8.8E-07 56.3 5.0 40 1-40 1-40 (386)
169 PTZ00117 malate dehydrogenase; 94.7 0.04 8.7E-07 55.3 4.8 38 6-43 5-43 (319)
170 PF02254 TrkA_N: TrkA-N domain 94.7 0.067 1.4E-06 44.8 5.4 42 9-50 1-42 (116)
171 COG1748 LYS9 Saccharopine dehy 94.5 0.051 1.1E-06 55.9 5.1 43 6-48 1-44 (389)
172 cd01080 NAD_bind_m-THF_DH_Cycl 94.5 0.065 1.4E-06 48.9 5.2 41 6-46 44-85 (168)
173 PRK04148 hypothetical protein; 94.4 0.052 1.1E-06 47.6 4.2 42 7-49 18-59 (134)
174 PRK12409 D-amino acid dehydrog 94.4 0.047 1E-06 56.2 4.6 33 7-39 2-34 (410)
175 PRK07340 ornithine cyclodeamin 94.4 0.058 1.3E-06 53.8 5.1 44 6-49 125-170 (304)
176 PTZ00075 Adenosylhomocysteinas 94.4 0.061 1.3E-06 56.7 5.4 43 7-49 255-297 (476)
177 TIGR00112 proC pyrroline-5-car 94.4 0.45 9.8E-06 45.8 11.1 152 29-194 9-184 (245)
178 PRK08410 2-hydroxyacid dehydro 94.4 0.047 1E-06 54.7 4.3 34 6-39 145-178 (311)
179 PRK09496 trkA potassium transp 94.3 0.058 1.3E-06 56.3 5.0 41 7-47 1-41 (453)
180 cd01078 NAD_bind_H4MPT_DH NADP 94.2 0.085 1.8E-06 48.7 5.5 43 6-48 28-71 (194)
181 PRK06487 glycerate dehydrogena 94.2 0.052 1.1E-06 54.5 4.3 33 7-39 149-181 (317)
182 TIGR00518 alaDH alanine dehydr 94.1 0.076 1.6E-06 54.5 5.4 42 7-48 168-209 (370)
183 PRK00683 murD UDP-N-acetylmura 94.1 0.061 1.3E-06 55.9 4.7 36 7-42 4-39 (418)
184 PRK08291 ectoine utilization p 94.1 0.072 1.6E-06 53.7 5.0 44 6-49 132-177 (330)
185 TIGR02992 ectoine_eutC ectoine 94.0 0.074 1.6E-06 53.6 4.9 43 6-48 129-173 (326)
186 cd01483 E1_enzyme_family Super 93.9 0.08 1.7E-06 46.4 4.4 38 8-45 1-39 (143)
187 PRK06407 ornithine cyclodeamin 93.9 0.076 1.6E-06 53.0 4.8 59 6-65 117-177 (301)
188 PRK05476 S-adenosyl-L-homocyst 93.8 0.087 1.9E-06 55.0 5.2 44 6-49 212-255 (425)
189 COG4007 Predicted dehydrogenas 93.8 1.8 3.9E-05 42.1 13.5 166 6-184 1-228 (340)
190 PRK06823 ornithine cyclodeamin 93.7 0.1 2.2E-06 52.4 5.3 45 5-49 127-173 (315)
191 PRK11728 hydroxyglutarate oxid 93.7 0.078 1.7E-06 54.3 4.6 36 5-40 1-38 (393)
192 cd05297 GH4_alpha_glucosidase_ 93.7 0.074 1.6E-06 55.5 4.5 41 7-47 1-47 (423)
193 COG0169 AroE Shikimate 5-dehyd 93.7 0.1 2.3E-06 51.5 5.2 44 7-50 127-171 (283)
194 COG0673 MviM Predicted dehydro 93.7 0.11 2.4E-06 51.8 5.5 76 5-86 2-91 (342)
195 cd01487 E1_ThiF_like E1_ThiF_l 93.7 0.086 1.9E-06 48.2 4.3 32 8-39 1-33 (174)
196 PRK06932 glycerate dehydrogena 93.6 0.074 1.6E-06 53.3 4.2 33 7-39 148-180 (314)
197 PLN02306 hydroxypyruvate reduc 93.6 0.076 1.7E-06 54.8 4.3 34 7-40 166-200 (386)
198 PRK14106 murD UDP-N-acetylmura 93.6 0.12 2.6E-06 53.9 5.8 35 5-39 4-38 (450)
199 PF01494 FAD_binding_3: FAD bi 93.5 0.093 2E-06 51.7 4.7 34 8-41 3-36 (356)
200 PRK08773 2-octaprenyl-3-methyl 93.5 0.1 2.2E-06 53.3 5.1 40 1-40 1-40 (392)
201 PRK06847 hypothetical protein; 93.3 0.1 2.2E-06 52.8 4.7 38 1-40 1-38 (375)
202 PF01113 DapB_N: Dihydrodipico 93.3 0.11 2.3E-06 44.8 4.0 33 7-39 1-36 (124)
203 PRK08020 ubiF 2-octaprenyl-3-m 93.2 0.11 2.4E-06 53.0 4.6 38 1-39 1-38 (391)
204 cd00401 AdoHcyase S-adenosyl-L 93.1 0.14 3.1E-06 53.2 5.5 44 7-50 203-246 (413)
205 PRK00711 D-amino acid dehydrog 93.1 0.11 2.4E-06 53.4 4.6 34 7-40 1-34 (416)
206 TIGR00936 ahcY adenosylhomocys 93.1 0.13 2.9E-06 53.3 5.2 44 6-49 195-238 (406)
207 PRK07494 2-octaprenyl-6-methox 93.1 0.12 2.7E-06 52.5 5.0 34 7-40 8-41 (388)
208 PRK05868 hypothetical protein; 93.1 0.11 2.4E-06 53.1 4.5 36 6-41 1-36 (372)
209 PRK07326 short chain dehydroge 93.0 0.17 3.7E-06 47.4 5.4 48 1-48 1-49 (237)
210 PF13450 NAD_binding_8: NAD(P) 93.0 0.16 3.4E-06 39.1 4.2 30 11-40 1-30 (68)
211 PRK10669 putative cation:proto 93.0 0.14 3E-06 55.4 5.4 44 6-49 417-460 (558)
212 PRK01390 murD UDP-N-acetylmura 93.0 0.16 3.4E-06 53.5 5.6 44 6-49 9-52 (460)
213 PRK06185 hypothetical protein; 93.0 0.13 2.8E-06 52.8 4.9 40 1-40 1-40 (407)
214 PF00899 ThiF: ThiF family; I 93.0 0.13 2.7E-06 44.7 4.1 36 6-41 2-38 (135)
215 PRK11259 solA N-methyltryptoph 93.0 0.12 2.7E-06 52.1 4.6 35 5-39 2-36 (376)
216 PRK08644 thiamine biosynthesis 93.0 0.091 2E-06 49.7 3.4 35 5-39 27-62 (212)
217 KOG1399 Flavin-containing mono 92.9 0.12 2.5E-06 54.4 4.5 38 3-40 3-40 (448)
218 PRK00141 murD UDP-N-acetylmura 92.9 0.16 3.4E-06 53.8 5.6 40 6-45 15-54 (473)
219 PRK06046 alanine dehydrogenase 92.9 0.16 3.4E-06 51.2 5.2 43 6-48 129-173 (326)
220 TIGR02356 adenyl_thiF thiazole 92.9 0.1 2.2E-06 48.8 3.7 36 5-40 20-56 (202)
221 PLN02494 adenosylhomocysteinas 92.9 0.16 3.4E-06 53.6 5.3 43 7-49 255-297 (477)
222 cd00650 LDH_MDH_like NAD-depen 92.9 0.13 2.9E-06 49.9 4.6 39 9-47 1-44 (263)
223 COG0771 MurD UDP-N-acetylmuram 92.9 0.1 2.3E-06 54.7 4.0 41 1-41 2-42 (448)
224 PRK07454 short chain dehydroge 92.9 0.2 4.4E-06 47.1 5.7 47 1-47 1-48 (241)
225 PRK06475 salicylate hydroxylas 92.8 0.13 2.9E-06 52.7 4.7 35 6-40 2-36 (400)
226 PRK00421 murC UDP-N-acetylmura 92.7 0.17 3.6E-06 53.3 5.4 49 1-49 2-52 (461)
227 PRK07045 putative monooxygenas 92.7 0.14 3E-06 52.3 4.6 40 1-41 1-40 (388)
228 PF02423 OCD_Mu_crystall: Orni 92.7 0.11 2.3E-06 52.1 3.8 58 6-65 128-187 (313)
229 PRK05714 2-octaprenyl-3-methyl 92.7 0.13 2.8E-06 52.8 4.5 34 6-39 2-35 (405)
230 PRK14027 quinate/shikimate deh 92.7 0.17 3.7E-06 50.0 5.1 42 7-48 128-170 (283)
231 PRK06753 hypothetical protein; 92.7 0.13 2.9E-06 51.9 4.4 34 7-40 1-34 (373)
232 TIGR02360 pbenz_hydroxyl 4-hyd 92.6 0.15 3.2E-06 52.5 4.7 36 5-40 1-36 (390)
233 KOG0069 Glyoxylate/hydroxypyru 92.6 0.18 3.9E-06 50.8 5.2 49 2-50 158-206 (336)
234 PRK08017 oxidoreductase; Provi 92.6 0.21 4.4E-06 47.4 5.3 42 6-47 2-44 (256)
235 PF00670 AdoHcyase_NAD: S-aden 92.5 0.23 4.9E-06 45.0 5.2 43 7-49 24-66 (162)
236 COG1712 Predicted dinucleotide 92.5 0.18 3.9E-06 48.0 4.6 42 7-48 1-45 (255)
237 PRK08132 FAD-dependent oxidore 92.5 0.17 3.6E-06 54.4 5.1 40 1-40 18-57 (547)
238 TIGR01988 Ubi-OHases Ubiquinon 92.4 0.15 3.2E-06 51.5 4.4 33 8-40 1-33 (385)
239 COG0644 FixC Dehydrogenases (f 92.3 0.16 3.5E-06 52.3 4.5 38 4-41 1-38 (396)
240 PRK05732 2-octaprenyl-6-methox 92.3 0.17 3.7E-06 51.5 4.6 34 5-38 2-38 (395)
241 cd05293 LDH_1 A subgroup of L- 92.2 0.21 4.6E-06 50.0 5.2 41 6-46 3-45 (312)
242 PRK09126 hypothetical protein; 92.2 0.18 3.8E-06 51.4 4.7 36 5-40 2-37 (392)
243 PRK06126 hypothetical protein; 92.2 0.19 4.2E-06 53.9 5.1 38 3-40 4-41 (545)
244 PRK12548 shikimate 5-dehydroge 92.2 0.27 5.8E-06 48.6 5.7 42 6-47 126-171 (289)
245 PRK09496 trkA potassium transp 92.1 0.22 4.7E-06 51.9 5.4 44 6-49 231-274 (453)
246 PF13460 NAD_binding_10: NADH( 92.1 0.28 6.1E-06 44.1 5.4 36 9-44 1-37 (183)
247 PRK07588 hypothetical protein; 92.1 0.17 3.8E-06 51.6 4.5 34 7-40 1-34 (391)
248 PF01266 DAO: FAD dependent ox 92.1 0.19 4E-06 49.6 4.5 31 8-38 1-31 (358)
249 PRK07538 hypothetical protein; 92.0 0.18 3.8E-06 52.1 4.4 34 7-40 1-34 (413)
250 PRK06505 enoyl-(acyl carrier p 92.0 0.26 5.6E-06 47.9 5.3 41 1-41 1-45 (271)
251 KOG2305 3-hydroxyacyl-CoA dehy 91.9 0.18 3.9E-06 48.1 3.9 38 6-43 3-40 (313)
252 COG0665 DadA Glycine/D-amino a 91.9 0.2 4.4E-06 50.6 4.7 38 4-41 2-39 (387)
253 PRK07774 short chain dehydroge 91.8 0.34 7.3E-06 45.7 5.8 47 1-47 1-48 (250)
254 PRK12826 3-ketoacyl-(acyl-carr 91.7 0.31 6.7E-06 45.8 5.4 47 1-47 1-48 (251)
255 PRK03659 glutathione-regulated 91.7 0.25 5.4E-06 54.0 5.3 44 6-49 400-443 (601)
256 TIGR01984 UbiH 2-polyprenyl-6- 91.7 0.2 4.4E-06 50.7 4.4 34 8-41 1-35 (382)
257 PRK08013 oxidoreductase; Provi 91.7 0.24 5.1E-06 51.0 4.9 34 7-40 4-37 (400)
258 cd00300 LDH_like L-lactate deh 91.6 0.24 5.2E-06 49.2 4.8 39 9-47 1-41 (300)
259 PLN00093 geranylgeranyl diphos 91.6 0.24 5.1E-06 52.2 4.9 35 6-40 39-73 (450)
260 PRK07364 2-octaprenyl-6-methox 91.6 0.25 5.3E-06 50.8 5.0 35 6-40 18-52 (415)
261 COG0654 UbiH 2-polyprenyl-6-me 91.6 0.19 4.2E-06 51.5 4.1 34 6-39 2-35 (387)
262 COG2910 Putative NADH-flavin r 91.5 0.19 4.2E-06 46.4 3.6 39 7-45 1-40 (211)
263 PRK06617 2-octaprenyl-6-methox 91.4 0.23 5E-06 50.6 4.4 34 6-39 1-34 (374)
264 PRK13394 3-hydroxybutyrate deh 91.4 0.39 8.4E-06 45.6 5.7 48 1-48 2-50 (262)
265 PRK01710 murD UDP-N-acetylmura 91.4 0.24 5.2E-06 52.1 4.7 35 6-40 14-48 (458)
266 PRK08243 4-hydroxybenzoate 3-m 91.3 0.24 5.3E-06 50.7 4.6 36 5-40 1-36 (392)
267 PRK07589 ornithine cyclodeamin 91.2 0.32 6.9E-06 49.5 5.2 59 5-65 128-188 (346)
268 PRK12550 shikimate 5-dehydroge 91.1 0.33 7.2E-06 47.7 5.0 42 7-48 123-165 (272)
269 PRK12475 thiamine/molybdopteri 91.0 0.28 6.1E-06 49.7 4.6 35 5-39 23-58 (338)
270 TIGR00872 gnd_rel 6-phosphoglu 91.0 0.28 6E-06 48.7 4.5 19 370-388 256-274 (298)
271 PRK05335 tRNA (uracil-5-)-meth 91.0 0.28 6.1E-06 51.2 4.6 37 5-41 1-37 (436)
272 PRK01747 mnmC bifunctional tRN 91.0 0.25 5.5E-06 54.5 4.6 33 7-39 261-293 (662)
273 cd05290 LDH_3 A subgroup of L- 91.0 0.34 7.5E-06 48.4 5.1 38 8-45 1-40 (307)
274 PRK05653 fabG 3-ketoacyl-(acyl 90.9 0.46 1E-05 44.3 5.7 42 6-47 5-47 (246)
275 PRK00048 dihydrodipicolinate r 90.9 0.26 5.7E-06 47.9 4.1 39 7-45 2-43 (257)
276 PRK07063 short chain dehydroge 90.9 0.47 1E-05 45.2 5.8 48 1-48 1-50 (260)
277 TIGR01377 soxA_mon sarcosine o 90.9 0.27 5.9E-06 49.7 4.4 32 8-39 2-33 (380)
278 COG0039 Mdh Malate/lactate deh 90.9 0.41 8.9E-06 47.9 5.5 38 7-44 1-40 (313)
279 PRK08265 short chain dehydroge 90.9 0.47 1E-05 45.5 5.8 48 1-48 1-49 (261)
280 TIGR03219 salicylate_mono sali 90.8 0.27 5.9E-06 50.7 4.4 34 7-40 1-35 (414)
281 PRK06199 ornithine cyclodeamin 90.8 0.36 7.9E-06 49.7 5.2 45 5-49 154-201 (379)
282 PRK08703 short chain dehydroge 90.7 0.45 9.8E-06 44.7 5.5 47 1-47 1-48 (239)
283 PRK02472 murD UDP-N-acetylmura 90.7 0.4 8.8E-06 50.0 5.6 35 6-40 5-39 (447)
284 PLN00141 Tic62-NAD(P)-related 90.7 0.4 8.6E-06 45.8 5.1 41 5-45 16-57 (251)
285 PLN02520 bifunctional 3-dehydr 90.6 0.4 8.6E-06 51.6 5.5 42 7-48 380-421 (529)
286 PF03435 Saccharop_dh: Sacchar 90.6 0.34 7.3E-06 49.7 4.8 40 9-48 1-42 (386)
287 PRK03369 murD UDP-N-acetylmura 90.4 0.43 9.4E-06 50.7 5.5 43 7-49 13-55 (488)
288 PRK05993 short chain dehydroge 90.4 0.53 1.1E-05 45.6 5.7 43 5-47 3-46 (277)
289 PF00743 FMO-like: Flavin-bind 90.4 0.32 6.9E-06 52.3 4.5 35 7-41 2-36 (531)
290 PRK07608 ubiquinone biosynthes 90.3 0.37 8E-06 48.9 4.8 38 4-41 3-40 (388)
291 CHL00194 ycf39 Ycf39; Provisio 90.3 0.42 9.2E-06 47.4 5.1 40 7-46 1-41 (317)
292 TIGR03364 HpnW_proposed FAD de 90.3 0.34 7.4E-06 48.8 4.5 32 8-39 2-33 (365)
293 PLN02602 lactate dehydrogenase 90.3 0.42 9.2E-06 48.7 5.1 39 7-45 38-78 (350)
294 TIGR01921 DAP-DH diaminopimela 90.3 0.38 8.3E-06 48.4 4.7 34 6-39 3-38 (324)
295 PLN02985 squalene monooxygenas 90.2 0.38 8.2E-06 51.6 4.9 35 6-40 43-77 (514)
296 PTZ00367 squalene epoxidase; P 90.2 0.38 8.1E-06 52.2 4.9 35 5-39 32-66 (567)
297 COG2423 Predicted ornithine cy 90.1 0.39 8.4E-06 48.5 4.6 59 6-65 130-190 (330)
298 PRK10157 putative oxidoreducta 90.1 0.42 9.2E-06 49.8 5.1 39 1-40 1-39 (428)
299 PLN02927 antheraxanthin epoxid 90.1 0.38 8.2E-06 53.1 4.8 36 4-39 79-114 (668)
300 PRK06183 mhpA 3-(3-hydroxyphen 90.1 0.42 9E-06 51.3 5.1 36 5-40 9-44 (538)
301 PRK06194 hypothetical protein; 90.0 0.6 1.3E-05 45.2 5.8 47 1-47 1-48 (287)
302 PRK06444 prephenate dehydrogen 90.0 0.31 6.8E-06 45.6 3.6 108 7-152 1-123 (197)
303 PRK08849 2-octaprenyl-3-methyl 89.9 0.41 8.9E-06 48.9 4.7 33 7-39 4-36 (384)
304 PRK08850 2-octaprenyl-6-methox 89.9 0.4 8.8E-06 49.2 4.7 32 7-38 5-36 (405)
305 PRK12939 short chain dehydroge 89.9 0.64 1.4E-05 43.7 5.7 47 1-47 2-49 (250)
306 PF00070 Pyr_redox: Pyridine n 89.8 0.57 1.2E-05 36.7 4.5 35 8-42 1-35 (80)
307 cd00757 ThiF_MoeB_HesA_family 89.8 0.45 9.8E-06 45.3 4.6 36 5-40 20-56 (228)
308 PRK05225 ketol-acid reductoiso 89.8 0.25 5.5E-06 51.7 3.0 33 6-38 36-68 (487)
309 COG1064 AdhP Zn-dependent alco 89.7 0.83 1.8E-05 46.3 6.6 47 6-52 167-213 (339)
310 cd01076 NAD_bind_1_Glu_DH NAD( 89.7 0.67 1.4E-05 44.3 5.7 33 5-37 30-63 (227)
311 PRK11101 glpA sn-glycerol-3-ph 89.6 0.47 1E-05 51.2 5.0 35 4-38 4-38 (546)
312 PRK08244 hypothetical protein; 89.6 0.43 9.4E-06 50.5 4.7 35 6-40 2-36 (493)
313 PRK02006 murD UDP-N-acetylmura 89.6 0.44 9.5E-06 50.7 4.8 43 6-48 7-51 (498)
314 PRK06914 short chain dehydroge 89.5 0.65 1.4E-05 44.8 5.6 40 9-48 6-46 (280)
315 PLN02172 flavin-containing mon 89.5 0.5 1.1E-05 49.9 5.1 35 6-40 10-44 (461)
316 PRK06500 short chain dehydroge 89.4 0.7 1.5E-05 43.5 5.6 47 1-47 1-48 (249)
317 PRK03562 glutathione-regulated 89.4 0.52 1.1E-05 51.7 5.3 44 6-49 400-443 (621)
318 PRK07688 thiamine/molybdopteri 89.4 0.4 8.7E-06 48.6 4.1 36 5-40 23-59 (339)
319 PRK12749 quinate/shikimate deh 89.2 0.63 1.4E-05 46.1 5.3 42 7-48 125-170 (288)
320 PRK02318 mannitol-1-phosphate 89.1 0.51 1.1E-05 48.6 4.7 43 7-49 1-44 (381)
321 PRK00676 hemA glutamyl-tRNA re 89.1 0.49 1.1E-05 47.9 4.4 37 5-41 173-210 (338)
322 PRK08328 hypothetical protein; 89.0 0.45 9.7E-06 45.5 3.9 41 5-45 26-67 (231)
323 PRK04308 murD UDP-N-acetylmura 88.9 0.59 1.3E-05 48.9 5.1 40 1-41 1-40 (445)
324 PRK07024 short chain dehydroge 88.9 0.73 1.6E-05 43.9 5.4 43 6-48 2-45 (257)
325 cd01492 Aos1_SUMO Ubiquitin ac 88.9 0.38 8.1E-06 44.9 3.2 35 5-39 20-55 (197)
326 TIGR01087 murD UDP-N-acetylmur 88.8 0.49 1.1E-05 49.2 4.4 33 8-40 1-33 (433)
327 cd01485 E1-1_like Ubiquitin ac 88.8 0.4 8.6E-06 44.8 3.3 36 5-40 18-54 (198)
328 PRK13303 L-aspartate dehydroge 88.8 0.64 1.4E-05 45.4 5.0 32 7-38 2-35 (265)
329 PRK12936 3-ketoacyl-(acyl-carr 88.7 0.87 1.9E-05 42.6 5.7 47 1-47 1-48 (245)
330 PRK08085 gluconate 5-dehydroge 88.7 0.85 1.8E-05 43.3 5.6 39 9-47 12-51 (254)
331 TIGR01373 soxB sarcosine oxida 88.6 0.56 1.2E-05 48.1 4.7 33 7-39 31-65 (407)
332 PRK07523 gluconate 5-dehydroge 88.6 0.87 1.9E-05 43.2 5.7 41 7-47 11-52 (255)
333 cd00755 YgdL_like Family of ac 88.5 0.42 9.2E-06 45.8 3.4 41 4-44 9-50 (231)
334 PRK02705 murD UDP-N-acetylmura 88.5 0.54 1.2E-05 49.2 4.5 33 8-40 2-34 (459)
335 PRK06718 precorrin-2 dehydroge 88.5 0.73 1.6E-05 43.2 4.9 43 5-47 9-52 (202)
336 PLN02948 phosphoribosylaminoim 88.5 0.64 1.4E-05 50.6 5.1 40 1-40 17-56 (577)
337 PF01262 AlaDh_PNT_C: Alanine 88.4 0.88 1.9E-05 41.1 5.3 44 7-50 21-64 (168)
338 PRK05884 short chain dehydroge 88.4 0.8 1.7E-05 43.0 5.2 40 8-47 2-42 (223)
339 PRK07074 short chain dehydroge 88.3 0.85 1.8E-05 43.3 5.4 42 7-48 3-45 (257)
340 PRK05565 fabG 3-ketoacyl-(acyl 88.3 0.91 2E-05 42.5 5.5 45 4-48 3-49 (247)
341 PRK15076 alpha-galactosidase; 88.3 0.46 9.9E-06 49.8 3.7 38 7-44 2-45 (431)
342 cd05211 NAD_bind_Glu_Leu_Phe_V 88.2 1 2.2E-05 42.8 5.7 35 5-39 22-57 (217)
343 PRK07060 short chain dehydroge 88.1 0.98 2.1E-05 42.3 5.6 42 7-48 10-52 (245)
344 TIGR02032 GG-red-SF geranylger 88.1 0.66 1.4E-05 44.6 4.5 34 8-41 2-35 (295)
345 TIGR00137 gid_trmFO tRNA:m(5)U 88.1 0.6 1.3E-05 48.9 4.4 34 8-41 2-35 (433)
346 PRK08339 short chain dehydroge 88.0 0.98 2.1E-05 43.5 5.7 42 7-48 8-51 (263)
347 PRK06019 phosphoribosylaminoim 88.0 0.66 1.4E-05 47.5 4.7 36 6-41 2-37 (372)
348 PRK07102 short chain dehydroge 88.0 0.88 1.9E-05 42.9 5.2 41 7-47 2-43 (243)
349 PRK07453 protochlorophyllide o 88.0 1 2.2E-05 44.8 5.8 48 1-48 1-49 (322)
350 cd05311 NAD_bind_2_malic_enz N 87.9 0.78 1.7E-05 43.8 4.8 32 7-38 26-60 (226)
351 PRK01438 murD UDP-N-acetylmura 87.9 0.91 2E-05 47.9 5.7 33 7-39 17-49 (480)
352 PF00984 UDPG_MGDP_dh: UDP-glu 87.7 5.9 0.00013 32.6 9.3 89 153-261 3-91 (96)
353 PRK06172 short chain dehydroge 87.7 1.1 2.5E-05 42.3 5.8 42 7-48 8-50 (253)
354 PRK06184 hypothetical protein; 87.7 0.7 1.5E-05 49.1 4.8 34 7-40 4-37 (502)
355 PRK07666 fabG 3-ketoacyl-(acyl 87.6 1.1 2.5E-05 41.9 5.7 42 6-47 7-49 (239)
356 PRK14982 acyl-ACP reductase; P 87.5 0.91 2E-05 46.1 5.2 43 6-48 155-200 (340)
357 PRK11445 putative oxidoreducta 87.5 0.64 1.4E-05 46.9 4.2 33 7-40 2-34 (351)
358 COG3380 Predicted NAD/FAD-depe 87.5 0.8 1.7E-05 45.0 4.6 40 7-46 2-41 (331)
359 cd05294 LDH-like_MDH_nadp A la 87.5 0.66 1.4E-05 46.4 4.2 33 7-39 1-36 (309)
360 PRK06180 short chain dehydroge 87.5 1 2.2E-05 43.5 5.5 42 7-48 5-47 (277)
361 PRK04690 murD UDP-N-acetylmura 87.5 0.89 1.9E-05 48.1 5.4 34 6-39 8-41 (468)
362 PRK10015 oxidoreductase; Provi 87.5 0.81 1.8E-05 47.8 5.0 39 1-40 1-39 (429)
363 PLN00016 RNA-binding protein; 87.5 0.58 1.3E-05 47.8 3.9 40 3-42 49-93 (378)
364 PRK13339 malate:quinone oxidor 87.4 0.81 1.8E-05 48.9 5.0 38 1-38 1-40 (497)
365 PRK03806 murD UDP-N-acetylmura 87.3 0.81 1.8E-05 47.7 4.9 35 6-40 6-40 (438)
366 TIGR02355 moeB molybdopterin s 87.3 0.6 1.3E-05 45.0 3.6 37 6-42 24-61 (240)
367 TIGR01320 mal_quin_oxido malat 87.3 0.73 1.6E-05 49.0 4.6 33 8-40 2-36 (483)
368 PRK12814 putative NADPH-depend 87.3 0.79 1.7E-05 50.6 5.0 36 5-40 192-227 (652)
369 KOG2820 FAD-dependent oxidored 87.2 0.61 1.3E-05 47.0 3.7 36 3-38 4-39 (399)
370 PRK06719 precorrin-2 dehydroge 87.2 0.92 2E-05 40.8 4.6 40 6-47 13-52 (157)
371 TIGR01989 COQ6 Ubiquinone bios 87.2 0.68 1.5E-05 48.3 4.3 32 8-39 2-37 (437)
372 PRK06079 enoyl-(acyl carrier p 87.1 1.1 2.3E-05 42.9 5.3 39 1-39 1-43 (252)
373 PRK07067 sorbitol dehydrogenas 87.1 1.2 2.6E-05 42.3 5.6 42 6-47 6-48 (257)
374 smart00846 Gp_dh_N Glyceraldeh 87.1 1 2.2E-05 40.3 4.7 41 7-47 1-44 (149)
375 PRK08267 short chain dehydroge 87.0 1.1 2.3E-05 42.7 5.2 42 7-48 2-44 (260)
376 PRK05690 molybdopterin biosynt 86.8 0.9 2E-05 43.9 4.6 39 6-44 32-71 (245)
377 PRK03803 murD UDP-N-acetylmura 86.8 0.84 1.8E-05 47.8 4.7 34 7-40 7-40 (448)
378 TIGR03325 BphB_TodD cis-2,3-di 86.8 1.3 2.7E-05 42.4 5.6 41 7-47 6-47 (262)
379 PTZ00383 malate:quinone oxidor 86.7 0.85 1.8E-05 48.7 4.7 35 5-39 44-80 (497)
380 PRK09424 pntA NAD(P) transhydr 86.7 1 2.3E-05 48.1 5.3 46 6-51 165-210 (509)
381 PRK05257 malate:quinone oxidor 86.7 0.94 2E-05 48.3 5.0 35 6-40 5-41 (494)
382 PRK07062 short chain dehydroge 86.7 1.4 3E-05 42.1 5.8 41 8-48 9-51 (265)
383 PRK08217 fabG 3-ketoacyl-(acyl 86.6 1.4 3E-05 41.4 5.7 41 7-47 6-47 (253)
384 PRK08177 short chain dehydroge 86.5 1.3 2.8E-05 41.3 5.4 40 7-46 2-42 (225)
385 PRK06101 short chain dehydroge 86.4 1.2 2.6E-05 42.0 5.2 41 8-48 3-44 (240)
386 PRK12746 short chain dehydroge 86.4 1.2 2.6E-05 42.0 5.3 47 1-47 1-49 (254)
387 PRK15116 sulfur acceptor prote 86.4 0.75 1.6E-05 45.1 3.8 37 5-41 29-66 (268)
388 PRK07478 short chain dehydroge 86.4 1.4 3E-05 41.8 5.7 42 7-48 7-49 (254)
389 PRK12828 short chain dehydroge 86.3 1.5 3.2E-05 40.7 5.7 40 7-46 8-48 (239)
390 PRK05876 short chain dehydroge 86.3 1.4 3E-05 42.8 5.7 46 1-47 1-48 (275)
391 TIGR00031 UDP-GALP_mutase UDP- 86.2 0.96 2.1E-05 46.6 4.7 33 7-39 2-34 (377)
392 PRK10538 malonic semialdehyde 86.2 1.2 2.7E-05 42.1 5.2 41 7-47 1-42 (248)
393 TIGR03329 Phn_aa_oxid putative 86.2 0.93 2E-05 47.6 4.7 35 5-39 23-59 (460)
394 TIGR02028 ChlP geranylgeranyl 86.1 0.9 1.9E-05 46.9 4.4 34 7-40 1-34 (398)
395 PLN02463 lycopene beta cyclase 86.0 1 2.2E-05 47.5 4.8 35 6-40 28-62 (447)
396 PRK12266 glpD glycerol-3-phosp 86.0 1.1 2.4E-05 47.9 5.1 34 5-38 5-38 (508)
397 PRK07231 fabG 3-ketoacyl-(acyl 85.9 1.5 3.3E-05 41.1 5.6 41 7-47 6-47 (251)
398 PRK08309 short chain dehydroge 85.9 1.4 3.1E-05 40.3 5.2 41 7-47 1-41 (177)
399 PRK01368 murD UDP-N-acetylmura 85.9 1.3 2.8E-05 46.7 5.5 41 1-42 1-41 (454)
400 PRK06200 2,3-dihydroxy-2,3-dih 85.8 1.6 3.5E-05 41.7 5.8 42 7-48 7-49 (263)
401 TIGR02023 BchP-ChlP geranylger 85.8 0.93 2E-05 46.4 4.3 31 8-38 2-32 (388)
402 KOG3124 Pyrroline-5-carboxylat 85.8 4.2 9.1E-05 39.5 8.4 165 7-193 1-201 (267)
403 PRK07806 short chain dehydroge 85.6 1.6 3.4E-05 41.1 5.6 40 1-40 1-41 (248)
404 PRK08589 short chain dehydroge 85.5 1.7 3.7E-05 41.9 5.8 46 1-47 1-47 (272)
405 TIGR03736 PRTRC_ThiF PRTRC sys 85.4 1.1 2.4E-05 43.3 4.4 36 5-40 10-56 (244)
406 PRK07333 2-octaprenyl-6-methox 85.4 1.1 2.3E-05 45.8 4.5 34 7-40 2-37 (403)
407 PRK07208 hypothetical protein; 85.3 1.2 2.5E-05 46.9 4.9 36 5-40 3-38 (479)
408 COG1233 Phytoene dehydrogenase 85.3 1 2.2E-05 47.9 4.5 35 5-39 2-36 (487)
409 PRK14175 bifunctional 5,10-met 85.3 1.3 2.9E-05 43.8 4.9 38 6-43 158-196 (286)
410 KOG2741 Dimeric dihydrodiol de 85.3 1.9 4.1E-05 43.6 6.0 50 1-50 1-54 (351)
411 PRK12825 fabG 3-ketoacyl-(acyl 85.3 1.8 3.9E-05 40.3 5.7 40 1-40 1-41 (249)
412 COG0300 DltE Short-chain dehyd 85.3 1.7 3.8E-05 42.5 5.7 49 1-49 1-50 (265)
413 PRK05875 short chain dehydroge 85.2 1.8 3.9E-05 41.5 5.9 41 7-47 8-49 (276)
414 PRK06057 short chain dehydroge 85.2 1.8 3.9E-05 41.1 5.7 41 7-47 8-49 (255)
415 PRK12769 putative oxidoreducta 85.0 1.1 2.4E-05 49.3 4.8 35 6-40 327-361 (654)
416 PTZ00325 malate dehydrogenase; 85.0 1.2 2.5E-05 45.0 4.5 35 4-38 6-43 (321)
417 PRK06139 short chain dehydroge 85.0 1.6 3.5E-05 43.8 5.6 42 7-48 8-50 (330)
418 PRK07109 short chain dehydroge 85.0 1.8 4E-05 43.4 6.0 40 8-47 10-50 (334)
419 PRK08762 molybdopterin biosynt 85.0 1.1 2.3E-05 46.1 4.3 35 5-39 134-169 (376)
420 TIGR01772 MDH_euk_gproteo mala 85.0 1.1 2.4E-05 44.9 4.3 32 8-39 1-35 (312)
421 cd01491 Ube1_repeat1 Ubiquitin 84.9 0.84 1.8E-05 45.2 3.4 38 3-40 16-54 (286)
422 PRK12831 putative oxidoreducta 84.9 1.3 2.9E-05 46.7 5.1 36 4-39 138-173 (464)
423 PRK06949 short chain dehydroge 84.9 1.8 3.8E-05 41.0 5.6 42 7-48 10-52 (258)
424 PRK12810 gltD glutamate syntha 84.8 1.3 2.8E-05 46.8 5.0 35 6-40 143-177 (471)
425 PRK12429 3-hydroxybutyrate deh 84.8 1.8 3.9E-05 40.8 5.6 42 7-48 5-47 (258)
426 PLN02819 lysine-ketoglutarate 84.8 1.3 2.7E-05 51.4 5.1 44 6-49 569-626 (1042)
427 KOG2614 Kynurenine 3-monooxyge 84.8 1.2 2.6E-05 46.0 4.5 35 6-40 2-36 (420)
428 PRK05786 fabG 3-ketoacyl-(acyl 84.8 1.9 4E-05 40.3 5.6 41 7-47 6-47 (238)
429 PRK07576 short chain dehydroge 84.8 1.8 3.8E-05 41.6 5.6 40 7-46 10-50 (264)
430 PRK07190 hypothetical protein; 84.7 1.2 2.7E-05 47.3 4.8 39 1-40 1-39 (487)
431 PRK12829 short chain dehydroge 84.7 1.5 3.4E-05 41.5 5.1 43 6-48 11-54 (264)
432 PRK05867 short chain dehydroge 84.6 1.8 4E-05 41.0 5.6 41 8-48 11-52 (253)
433 PRK04207 glyceraldehyde-3-phos 84.6 1.4 3E-05 44.7 4.9 42 6-47 1-44 (341)
434 PRK06834 hypothetical protein; 84.6 1.2 2.7E-05 47.3 4.7 34 7-40 4-37 (488)
435 COG1023 Gnd Predicted 6-phosph 84.5 1.1 2.4E-05 43.1 3.8 75 309-391 223-299 (300)
436 PRK06953 short chain dehydroge 84.5 1.5 3.3E-05 40.7 4.8 41 7-47 2-43 (222)
437 PRK08223 hypothetical protein; 84.5 0.91 2E-05 45.0 3.4 38 5-42 26-64 (287)
438 TIGR01082 murC UDP-N-acetylmur 84.3 1.5 3.2E-05 46.0 5.1 42 8-49 1-44 (448)
439 PRK06567 putative bifunctional 84.3 1.3 2.7E-05 50.9 4.8 34 5-38 382-415 (1028)
440 PRK07890 short chain dehydroge 84.2 1.7 3.7E-05 41.1 5.1 42 7-48 6-48 (258)
441 PRK08264 short chain dehydroge 84.1 1.7 3.7E-05 40.6 5.1 39 6-44 6-46 (238)
442 KOG1209 1-Acyl dihydroxyaceton 84.1 2.3 5E-05 40.4 5.7 66 7-85 8-76 (289)
443 PLN03209 translocon at the inn 84.1 1.8 3.9E-05 46.9 5.6 40 8-47 82-122 (576)
444 KOG2711 Glycerol-3-phosphate d 84.0 1.6 3.4E-05 44.1 4.8 34 7-40 22-62 (372)
445 PLN02989 cinnamyl-alcohol dehy 84.0 2.1 4.6E-05 42.2 5.9 43 1-44 1-44 (325)
446 PRK11908 NAD-dependent epimera 84.0 1.5 3.2E-05 44.0 4.7 39 7-45 2-42 (347)
447 KOG1298 Squalene monooxygenase 83.9 1.6 3.6E-05 44.8 4.9 40 7-46 46-85 (509)
448 PRK09291 short chain dehydroge 83.9 1.9 4.2E-05 40.7 5.3 43 6-48 2-45 (257)
449 PRK06182 short chain dehydroge 83.9 1.9 4.1E-05 41.4 5.3 40 7-46 4-44 (273)
450 PRK03815 murD UDP-N-acetylmura 83.9 1.2 2.7E-05 46.1 4.3 33 7-40 1-33 (401)
451 PRK06124 gluconate 5-dehydroge 83.8 2.2 4.7E-05 40.4 5.7 41 7-47 12-53 (256)
452 PLN02253 xanthoxin dehydrogena 83.8 2 4.4E-05 41.3 5.5 40 8-47 19-60 (280)
453 PRK05854 short chain dehydroge 83.8 2 4.3E-05 42.6 5.6 40 8-47 15-56 (313)
454 PRK06198 short chain dehydroge 83.7 2 4.3E-05 40.8 5.3 46 1-46 1-48 (260)
455 PRK08251 short chain dehydroge 83.7 2 4.4E-05 40.4 5.4 41 7-47 3-44 (248)
456 PRK06482 short chain dehydroge 83.6 2 4.3E-05 41.3 5.4 43 6-48 2-45 (276)
457 PRK13369 glycerol-3-phosphate 83.6 1.6 3.4E-05 46.5 5.0 33 6-38 6-38 (502)
458 PRK06720 hypothetical protein; 83.5 2.7 5.8E-05 38.1 5.8 38 9-46 19-57 (169)
459 PRK06940 short chain dehydroge 83.5 1.9 4.2E-05 41.7 5.3 40 7-47 3-42 (275)
460 PRK12809 putative oxidoreducta 83.3 1.4 3.1E-05 48.4 4.7 35 6-40 310-344 (639)
461 PRK05597 molybdopterin biosynt 83.3 1.1 2.4E-05 45.7 3.5 35 5-39 27-62 (355)
462 cd01338 MDH_choloroplast_like 83.2 1.4 3.1E-05 44.4 4.2 33 7-39 3-43 (322)
463 cd01337 MDH_glyoxysomal_mitoch 83.2 1.5 3.2E-05 44.0 4.3 32 7-38 1-35 (310)
464 PRK06924 short chain dehydroge 83.2 2 4.4E-05 40.4 5.1 38 7-44 2-41 (251)
465 PRK04176 ribulose-1,5-biphosph 83.1 1.5 3.2E-05 42.7 4.2 37 4-40 23-59 (257)
466 TIGR00036 dapB dihydrodipicoli 83.1 1.3 2.8E-05 43.3 3.8 32 7-38 2-36 (266)
467 PRK08862 short chain dehydroge 83.1 2.1 4.5E-05 40.4 5.2 42 7-48 6-48 (227)
468 PRK07878 molybdopterin biosynt 83.0 1.1 2.3E-05 46.5 3.3 37 5-41 41-78 (392)
469 PF05368 NmrA: NmrA-like famil 83.0 2 4.4E-05 40.3 5.1 41 9-49 1-44 (233)
470 PRK08340 glucose-1-dehydrogena 83.0 2.1 4.5E-05 40.8 5.2 41 8-48 2-43 (259)
471 PRK07814 short chain dehydroge 83.0 2.2 4.9E-05 40.7 5.4 42 7-48 11-53 (263)
472 TIGR03466 HpnA hopanoid-associ 83.0 1.2 2.7E-05 43.6 3.7 37 7-43 1-38 (328)
473 PRK08277 D-mannonate oxidoredu 83.0 2.3 5.1E-05 40.9 5.6 41 8-48 12-53 (278)
474 TIGR01761 thiaz-red thiazoliny 82.9 3.3 7.2E-05 42.1 6.8 43 6-49 3-48 (343)
475 PRK12779 putative bifunctional 82.9 1.3 2.9E-05 50.9 4.4 34 6-39 306-339 (944)
476 PLN02662 cinnamyl-alcohol dehy 82.8 2.6 5.5E-05 41.4 5.9 38 6-43 4-42 (322)
477 PRK08263 short chain dehydroge 82.8 2.3 5.1E-05 40.9 5.5 42 7-48 4-46 (275)
478 PRK05600 thiamine biosynthesis 82.7 1.3 2.9E-05 45.4 3.9 36 5-40 40-76 (370)
479 PRK11579 putative oxidoreducta 82.7 1.8 3.9E-05 43.7 4.8 37 7-43 5-44 (346)
480 PLN02686 cinnamoyl-CoA reducta 82.6 2.5 5.4E-05 43.0 5.8 44 3-46 50-94 (367)
481 cd01484 E1-2_like Ubiquitin ac 82.5 1.8 3.9E-05 41.6 4.4 35 8-42 1-36 (234)
482 TIGR01470 cysG_Nterm siroheme 82.4 2.4 5.2E-05 39.8 5.2 44 5-48 8-52 (205)
483 PLN02780 ketoreductase/ oxidor 82.4 2.1 4.5E-05 42.9 5.0 40 9-48 56-96 (320)
484 PRK09072 short chain dehydroge 82.4 2.6 5.7E-05 40.1 5.6 42 7-48 6-48 (263)
485 PRK12827 short chain dehydroge 82.3 2.3 5.1E-05 39.7 5.2 38 1-38 1-39 (249)
486 PRK08643 acetoin reductase; Va 82.3 2.5 5.3E-05 40.1 5.4 40 8-47 4-44 (256)
487 PRK05866 short chain dehydroge 82.3 2.7 5.8E-05 41.3 5.8 42 7-48 41-83 (293)
488 PRK14573 bifunctional D-alanyl 82.3 2 4.3E-05 48.7 5.4 43 7-49 5-49 (809)
489 TIGR00561 pntA NAD(P) transhyd 82.2 2.1 4.6E-05 45.8 5.3 44 7-50 165-208 (511)
490 PRK11749 dihydropyrimidine deh 82.2 1.8 3.8E-05 45.5 4.7 36 5-40 139-174 (457)
491 PRK09186 flagellin modificatio 82.2 2.7 5.8E-05 39.7 5.6 42 7-48 5-47 (256)
492 PRK12384 sorbitol-6-phosphate 82.2 2.6 5.7E-05 39.9 5.5 40 8-47 4-44 (259)
493 TIGR02733 desat_CrtD C-3',4' d 82.1 1.7 3.6E-05 46.0 4.5 34 7-40 2-35 (492)
494 TIGR01790 carotene-cycl lycope 82.1 1.7 3.6E-05 44.2 4.4 33 8-40 1-33 (388)
495 PLN02650 dihydroflavonol-4-red 82.1 2.6 5.7E-05 42.2 5.8 42 5-46 4-46 (351)
496 PRK08219 short chain dehydroge 82.1 2.3 4.9E-05 39.2 4.9 41 6-47 3-44 (227)
497 TIGR01316 gltA glutamate synth 82.0 1.9 4.2E-05 45.2 4.9 34 6-39 133-166 (449)
498 PLN02214 cinnamoyl-CoA reducta 82.0 2.1 4.6E-05 43.0 5.0 38 4-41 8-46 (342)
499 PRK08294 phenol 2-monooxygenas 81.9 1.7 3.7E-05 47.8 4.6 35 6-40 32-67 (634)
500 PRK05872 short chain dehydroge 81.8 2.9 6.3E-05 41.0 5.8 42 7-48 10-52 (296)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-123 Score=912.08 Aligned_cols=391 Identities=50% Similarity=0.809 Sum_probs=374.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC--------CCcE---ecCC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH--------PTPQ---IHHH 73 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~vI---v~~g 73 (426)
|.++||+||||+||+|||+|++++||+|+|||||++|+++|.++.+.. .++.++.+++ ||+| |++|
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~---k~i~~~~sieefV~~Le~PRkI~lMVkAG 78 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKG---KNIVPAYSIEEFVASLEKPRKILLMVKAG 78 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccC---CCccccCcHHHHHHHhcCCceEEEEEecC
Confidence 567899999999999999999999999999999999999999887644 3788888876 8877 9999
Q ss_pred chHHHHHhhcCCC------------ccccchhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHH
Q 043238 74 RPLGETSGTSTPS------------AVSMKPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQ 133 (426)
Q Consensus 74 ~~vd~vl~~l~p~------------s~~~~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~ 133 (426)
.+||.+|++|+|+ |+|+||.|| ++||++|||||++||++||||||||++++|+.|+|||+
T Consensus 79 ~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~ 158 (473)
T COG0362 79 TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILT 158 (473)
T ss_pred CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHH
Confidence 9999999999987 999999999 89999999999999999999999999999999999999
Q ss_pred HhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHh
Q 043238 134 RVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADI 213 (426)
Q Consensus 134 ~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~i 213 (426)
+|+||++|+|||.|+||.|+|||||||||+|||++||+|+|+|.+||..+||+.++|+++|++||+|.+.|||+||+.++
T Consensus 159 ~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~I 238 (473)
T COG0362 159 KIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADI 238 (473)
T ss_pred HHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred hhccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccccccc
Q 043238 214 FKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGV 293 (426)
Q Consensus 214 l~~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~ 293 (426)
|+.+|+.+..+++|.|+|.++|||||+|+++.|+++|+|+|+|.+||++||+|++|++|..|+++|++|.. ..
T Consensus 239 L~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~-------~~ 311 (473)
T COG0362 239 LRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKL-------GE 311 (473)
T ss_pred HhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCC-------CC
Confidence 99887656669999999999999999999999999999999999999999999999999999999988854 23
Q ss_pred ccchhHHHHHHHHHH------------------------------------------------HHHHHhcCCCCCCCCCc
Q 043238 294 HVDKKRLIDDVRQAL------------------------------------------------IKNAYQRNPNLASLVVD 325 (426)
Q Consensus 294 ~~~~~~~i~~~rda~------------------------------------------------i~~~y~~~~~~~nll~~ 325 (426)
..|+++||+++|+|| |+.+|+++|++.||+++
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~ 391 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLA 391 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcC
Confidence 679999999999999 99999999999999999
Q ss_pred hhHHHHHHHhhHhHHHHHHHHHHcCCchhhhHhhhhhHhhhccCCCchHHHHHhhhhccccccccccCCCccccccCCCC
Q 043238 326 PEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEWTKLA 405 (426)
Q Consensus 326 ~~f~~~~~~~~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~~l~~nliqaqrD~fgah~~~r~d~~g~~h~~w~~~~ 405 (426)
|+|.+.+++++++||+||++|++.|||+|+|||||+|||+||+++||+|||||||||||||||||+|++|.||++|++++
T Consensus 392 pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 392 PYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-118 Score=864.00 Aligned_cols=406 Identities=53% Similarity=0.855 Sum_probs=384.4
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC--------CCcE---
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH--------PTPQ--- 69 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~vI--- 69 (426)
|++...++||+|||++||++|++|++++||.|++||||.+|+++|++..++. +++.++.+++ ||+|
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~---~~i~ga~S~ed~v~klk~PR~iill 77 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKG---TKIIGAYSLEDFVSKLKKPRVIILL 77 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcC---CcccCCCCHHHHHHhcCCCcEEEEE
Confidence 7777778999999999999999999999999999999999999999876553 4788888877 8877
Q ss_pred ecCCchHHHHHhhcCCC------------ccccchhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHH
Q 043238 70 IHHHRPLGETSGTSTPS------------AVSMKPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIR 129 (426)
Q Consensus 70 v~~g~~vd~vl~~l~p~------------s~~~~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~ 129 (426)
|++|.+||..|++|.|+ |+|+||.|| +.||+++||||++|||+|||+||||++++|..++
T Consensus 78 vkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik 157 (487)
T KOG2653|consen 78 VKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIK 157 (487)
T ss_pred eeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHH
Confidence 99999999999998886 999999999 7799999999999999999999999999999999
Q ss_pred HHHHHhhccc-CCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHH
Q 043238 130 DILQRVAAHV-DDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQ 208 (426)
Q Consensus 130 ~iL~~iaa~~-~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~e 208 (426)
+||++|+||+ +++|||.|+|+.|+|||||||||+|||++||+|+|+|.+|++.++++.++|+++|++||+|.+.|||+|
T Consensus 158 ~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLie 237 (487)
T KOG2653|consen 158 DIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIE 237 (487)
T ss_pred HHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHH
Confidence 9999999997 789999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HhHHhhhccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccc
Q 043238 209 ITADIFKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEV 288 (426)
Q Consensus 209 i~~~il~~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~ 288 (426)
|+.+||+-+|+ .+.+++++|+|.++|||||+|+++.|+++|+|+|+|.+||++||+|++|+||..++++|++|..+.
T Consensus 238 IT~dIlk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~-- 314 (487)
T KOG2653|consen 238 ITADILKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR-- 314 (487)
T ss_pred HhHHHhheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch--
Confidence 99999987765 456899999999999999999999999999999999999999999999999999999999986531
Q ss_pred cccccccchhHHHHHHHHHH------------------------------------------------HHHHHhcCCCCC
Q 043238 289 QNVGVHVDKKRLIDDVRQAL------------------------------------------------IKNAYQRNPNLA 320 (426)
Q Consensus 289 ~~~~~~~~~~~~i~~~rda~------------------------------------------------i~~~y~~~~~~~ 320 (426)
....++++|++++|+|| |+++|+++|++.
T Consensus 315 ---~~~~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~ 391 (487)
T KOG2653|consen 315 ---DMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLA 391 (487)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHh
Confidence 23346899999999999 999999999999
Q ss_pred CCCCchhHHHHHHHhhHhHHHHHHHHHHcCCchhhhHhhhhhHhhhccCCCchHHHHHhhhhccccccccccCCC-cccc
Q 043238 321 SLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPG-SFHT 399 (426)
Q Consensus 321 nll~~~~f~~~~~~~~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~~l~~nliqaqrD~fgah~~~r~d~~g-~~h~ 399 (426)
||+++|+|.+++.++|.+||+||+.|+++|||+|++|++|+|||+||+++||+||+||||||||||||++++++| .+|+
T Consensus 392 nll~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~Ht 471 (487)
T KOG2653|consen 392 NLLLDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHT 471 (487)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred ccCCCCCcccCcccchhh
Q 043238 400 EWTKLARQTGAGVGAFNS 417 (426)
Q Consensus 400 ~w~~~~~~~~~~~~~~~~ 417 (426)
+|+++++++++ ++|++
T Consensus 472 nWtg~gg~~s~--~~y~a 487 (487)
T KOG2653|consen 472 NWTGHGGNVSS--STYQA 487 (487)
T ss_pred eecccCCcccc--cccCC
Confidence 99999999999 89975
No 3
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-96 Score=763.14 Aligned_cols=391 Identities=51% Similarity=0.863 Sum_probs=352.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC--------CCcE---ecCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH--------PTPQ---IHHHR 74 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~vI---v~~g~ 74 (426)
|++|||||||+||++||+||+++||+|++|||++++++++.+.+...+ .++.++.+++ |++| |++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g--~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~ 78 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGN--TRVKGYHTLEELVNSLKKPRKVILLIKAGE 78 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcC--CcceecCCHHHHHhcCCCCCEEEEEeCChH
Confidence 358999999999999999999999999999999999999987532211 1223343432 5644 89999
Q ss_pred hHHHHHhhcCCC------------ccccchhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHH
Q 043238 75 PLGETSGTSTPS------------AVSMKPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQR 134 (426)
Q Consensus 75 ~vd~vl~~l~p~------------s~~~~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~ 134 (426)
+|++|+++|.|. +.+++|.+| ++|+|||||||+.+|++|+++|+||++++|++++|+|+.
T Consensus 79 ~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ 158 (470)
T PTZ00142 79 AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEK 158 (470)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHH
Confidence 999999876654 456777776 899999999999999999999999999999999999999
Q ss_pred hhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhh
Q 043238 135 VAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIF 214 (426)
Q Consensus 135 iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il 214 (426)
++++++|+||+.|+|+.|+||++|||||+|+|++|++++|++.|+++..|+|++++.++|+.|+.|.+.|||++++.++|
T Consensus 159 ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~ 238 (470)
T PTZ00142 159 CSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKIL 238 (470)
T ss_pred HhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 99998899999999999999999999999999999999999999985344999999999999999999999999999999
Q ss_pred hccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccc
Q 043238 215 KVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVH 294 (426)
Q Consensus 215 ~~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~ 294 (426)
.++|+..+.+++|.|.|.+.|||||+|++++|+++|||+|+|++||++|++|++|++|..++++|++|..... ...
T Consensus 239 ~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~----~~~ 314 (470)
T PTZ00142 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK----TET 314 (470)
T ss_pred hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc----ccc
Confidence 8776522268999999999999999999999999999999999999999999999999999999987631000 112
Q ss_pred cchhHHHHHHHHHH------------------------------------------------HHHHHhcCCCCCCCCCch
Q 043238 295 VDKKRLIDDVRQAL------------------------------------------------IKNAYQRNPNLASLVVDP 326 (426)
Q Consensus 295 ~~~~~~i~~~rda~------------------------------------------------i~~~y~~~~~~~nll~~~ 326 (426)
.++..|++++|+++ ++.+|++++++.|||++|
T Consensus 315 ~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~ 394 (470)
T PTZ00142 315 EDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDP 394 (470)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCH
Confidence 36789999999999 999999999999999999
Q ss_pred hHHHHHHHhhHhHHHHHHHHHHcCCchhhhHhhhhhHhhhccCCCchHHHHHhhhhccccccccccCCCccccccC
Q 043238 327 EFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEWT 402 (426)
Q Consensus 327 ~f~~~~~~~~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~~l~~nliqaqrD~fgah~~~r~d~~g~~h~~w~ 402 (426)
+|.+++++++++||++|..|+++|+|+|++|+||+|||+||++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 395 ~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 395 DFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=7.2e-96 Score=760.82 Aligned_cols=407 Identities=71% Similarity=1.068 Sum_probs=359.3
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh----cccc--CCCCcccccCCCC-CCcE---e
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR----AHRE--DRPLHSQGLRPLH-PTPQ---I 70 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~----~~~~--~~~~~~~~~~~~~-~~vI---v 70 (426)
|++..+++|||||||+||++||+||+++||+|+||||+++++++|.+. |+.. ...+.-..+.+++ |++| |
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 889999999999999999999999999999999999999999999874 3210 0001112223332 5655 9
Q ss_pred cCCchHHHHHhhcCC----C-------cccc-chhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHH
Q 043238 71 HHHRPLGETSGTSTP----S-------AVSM-KPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRD 130 (426)
Q Consensus 71 ~~g~~vd~vl~~l~p----~-------s~~~-~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~ 130 (426)
+++++|++|++.+.| + |.++ +|.++ ++|||||||||+++|++||++|+|||+++|++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 999999999865444 3 5544 44444 89999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHh
Q 043238 131 ILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQIT 210 (426)
Q Consensus 131 iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~ 210 (426)
+|+.++++++|++||.|+|+.|+||++||+||+|+|++|++++|++.|+++..|+|++++.++|+.|+.|.+.||+++++
T Consensus 161 vL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~ 240 (493)
T PLN02350 161 ILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEIT 240 (493)
T ss_pred HHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999864499999999999999999999999999
Q ss_pred HHhhhccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccc
Q 043238 211 ADIFKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQN 290 (426)
Q Consensus 211 ~~il~~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~ 290 (426)
.+++..++++.+.|.++.+.||+.|||||+|++++|.++|+|+|+|++++.+||.|++|++|..++++|++|..... ..
T Consensus 241 ~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~-~~ 319 (493)
T PLN02350 241 ADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDI-LS 319 (493)
T ss_pred HHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCcccc-cc
Confidence 99987665567789999999999999999999999999999999999999999999999999999999976521100 00
Q ss_pred cccccchhHHHHHHHHHH------------------------------------------------HHHHHhcCCCCCCC
Q 043238 291 VGVHVDKKRLIDDVRQAL------------------------------------------------IKNAYQRNPNLASL 322 (426)
Q Consensus 291 ~~~~~~~~~~i~~~rda~------------------------------------------------i~~~y~~~~~~~nl 322 (426)
.....+++.|++++|+|| +.++|++++++.||
T Consensus 320 ~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l 399 (493)
T PLN02350 320 ADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASL 399 (493)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhh
Confidence 001246789999999999 99999999999999
Q ss_pred CCchhHHHHHHHhhHhHHHHHHHHHHcCCchhhhHhhhhhHhhhccCCCchHHHHHhhhhccccccccccCCCccccccC
Q 043238 323 VVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEWT 402 (426)
Q Consensus 323 l~~~~f~~~~~~~~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~~l~~nliqaqrD~fgah~~~r~d~~g~~h~~w~ 402 (426)
|++++|.+.+++.+++||++|..|++.|+|+|++|+||+|||+|+++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 400 ~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w~ 479 (493)
T PLN02350 400 LVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWT 479 (493)
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 043238 403 KLARQT 408 (426)
Q Consensus 403 ~~~~~~ 408 (426)
+.++..
T Consensus 480 ~~~~~~ 485 (493)
T PLN02350 480 KLARKS 485 (493)
T ss_pred hhcCcc
Confidence 765543
No 5
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=2e-93 Score=741.64 Aligned_cols=386 Identities=52% Similarity=0.819 Sum_probs=348.8
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCC-------CC-CCcE---ecCCchH
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRP-------LH-PTPQ---IHHHRPL 76 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~-~~vI---v~~g~~v 76 (426)
+|||||||+||.+||+||+++||+|++|||++++++++.+.+.... .+..+.+ ++ |++| ||++++|
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~---~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v 77 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGK---KIVGAYSIEEFVQSLERPRKIMLMVKAGAPV 77 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCC---CceecCCHHHHHhhcCCCCEEEEECCCcHHH
Confidence 5999999999999999999999999999999999999987621110 1222222 22 5644 8999999
Q ss_pred HHHHhhcCCC------------ccccchhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHHhh
Q 043238 77 GETSGTSTPS------------AVSMKPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVA 136 (426)
Q Consensus 77 d~vl~~l~p~------------s~~~~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~ia 136 (426)
++|+++|.|. +.+++|.++ ++|||||||||+++|++|+++|+||++++|++++|+|+.++
T Consensus 78 ~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia 157 (467)
T TIGR00873 78 DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIA 157 (467)
T ss_pred HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 9998776553 456677665 88999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhc
Q 043238 137 AHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKV 216 (426)
Q Consensus 137 a~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~ 216 (426)
++++|+||+.|+|+.|+||++|||||+|+|++|++++|++.|+++..|+|++++.++|+.|+.|.+.|||++++.++|.+
T Consensus 158 ~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 158 AKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 99888999999999999999999999999999999999999997544599999999999999999999999999999987
Q ss_pred cCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccc
Q 043238 217 KDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVD 296 (426)
Q Consensus 217 ~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~ 296 (426)
+|+ .+.+++|.|.|.+.|||||+|++++|+++|||+|+|++++++|+.|.+|++|..++++|.+|... ....+
T Consensus 238 ~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~------~~~~~ 310 (467)
T TIGR00873 238 KDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP------EPAVD 310 (467)
T ss_pred cCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc------ccccc
Confidence 665 45699999999999999999999999999999999999999999999999999999988776321 12236
Q ss_pred hhHHHHHHHHHH------------------------------------------------HHHHHhcCCCCCCCCCchhH
Q 043238 297 KKRLIDDVRQAL------------------------------------------------IKNAYQRNPNLASLVVDPEF 328 (426)
Q Consensus 297 ~~~~i~~~rda~------------------------------------------------i~~~y~~~~~~~nll~~~~f 328 (426)
+..|++++|+++ |+.+|++++++.|||++|+|
T Consensus 311 ~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~ 390 (467)
T TIGR00873 311 KEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYF 390 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHH
Confidence 788999999999 99999999999999999999
Q ss_pred HHHHHHhhHhHHHHHHHHHHcCCchhhhHhhhhhHhhhccCCCchHHHHHhhhhccccccccccCCC--ccccccCC
Q 043238 329 AREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPG--SFHTEWTK 403 (426)
Q Consensus 329 ~~~~~~~~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~~l~~nliqaqrD~fgah~~~r~d~~g--~~h~~w~~ 403 (426)
..+|++++++||+||..|+++|+|+|++|+||+|||+||++++|+|||||||||||+|||+|+|++| .||++|++
T Consensus 391 ~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 391 KDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999963
No 6
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=3.8e-93 Score=736.83 Aligned_cols=376 Identities=50% Similarity=0.812 Sum_probs=343.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCccchHHHHHh-ccccCCCCcccccCCCC--------CCcE---ecCCchHHHHHhhcC
Q 043238 17 MGQKLALNVPEKGFQISVYNRTTSKVDETLDR-AHREDRPLHSQGLRPLH--------PTPQ---IHHHRPLGETSGTST 84 (426)
Q Consensus 17 MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~--------~~vI---v~~g~~vd~vl~~l~ 84 (426)
||++||+||+++||+|+||||++++++++.+. +... .++++.+++ |++| ||+|++|++|++.|.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~----g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~ 76 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK----KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLL 76 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC----CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHH
Confidence 99999999999999999999999999999874 3211 233444443 5665 999999999987765
Q ss_pred CC------------ccccchhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHHhhccc-CCCC
Q 043238 85 PS------------AVSMKPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHV-DDGP 143 (426)
Q Consensus 85 p~------------s~~~~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~iaa~~-~~~~ 143 (426)
|+ +.+++|.|| ++|||||||||+.+|++|+++|+||++++|++++|+|+.+++++ +|+|
T Consensus 77 ~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 77 PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 54 466777766 89999999999999999999999999999999999999999998 8999
Q ss_pred cEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccCCCCCC
Q 043238 144 CITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDEYGEG 223 (426)
Q Consensus 144 ~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~~~~~ 223 (426)
||.|+|+.|+||++|||||+|+|++|++++|+|.|+++..|++++++.++|+.||.|.+.|||++++.+++.++|...+.
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999996334999999999999999999999999999999875532556
Q ss_pred cchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhHHHHH
Q 043238 224 ELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 303 (426)
Q Consensus 224 ~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 303 (426)
+++|.|+|.+.|||||+|++++|+++|||+|+|+.++++|+.|.+|++|..++.+|.+|.. ....++..|+++
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-------~~~~~~~~~i~~ 309 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-------KFEGDKAEFIED 309 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-------cccccHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999998887632 222467889999
Q ss_pred HHHHH------------------------------------------------HHHHHhcCCCCCCCCCchhHHHHHHHh
Q 043238 304 VRQAL------------------------------------------------IKNAYQRNPNLASLVVDPEFAREMVQR 335 (426)
Q Consensus 304 ~rda~------------------------------------------------i~~~y~~~~~~~nll~~~~f~~~~~~~ 335 (426)
+|+++ |+++|+++|++.|||++|+|.++++++
T Consensus 310 v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~ 389 (459)
T PRK09287 310 VRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEY 389 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhh
Confidence 99999 999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHcCCchhhhHhhhhhHhhhccCCCchHHHHHhhhhccccccccccCCCccccccCC
Q 043238 336 QAAWRRVVGLAISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEWTK 403 (426)
Q Consensus 336 ~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~~l~~nliqaqrD~fgah~~~r~d~~g~~h~~w~~ 403 (426)
+++||+||..|+++|||+|++|+||+|||+||++++|+|||||||||||+|||+|+|++|.|||+|++
T Consensus 390 ~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 390 QDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=7.4e-74 Score=553.91 Aligned_cols=243 Identities=58% Similarity=0.944 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccCCCCCCcchhhHHHhh
Q 043238 154 GNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDEYGEGELVDKILDKT 233 (426)
Q Consensus 154 g~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~~~~~~lld~i~kd~ 233 (426)
||||||||||||||+||+|+|+|.+|++..+++++++++||+.||+|.+.|||++|++++|+++| .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999987779999999999999999999999999999999876 46789999999999
Q ss_pred cccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhHHHHHHHHHH-----
Q 043238 234 GMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQAL----- 308 (426)
Q Consensus 234 ~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~rda~----- 308 (426)
.|||||+|++++|+++|||+|+|++||++|++|++|++|..+++.+++|... .....+++.|++++|+||
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~-----~~~~~~~~~~i~~l~~Aly~~~i 154 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKF-----DESKEDKEEFIEDLRKALYAAKI 154 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-S-----TTS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccccc-----ccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887421 134568899999999999
Q ss_pred -------------------------------------------HHHHHhcCCCCCCCCCchhHHHHHHHhhHhHHHHHHH
Q 043238 309 -------------------------------------------IKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGL 345 (426)
Q Consensus 309 -------------------------------------------i~~~y~~~~~~~nll~~~~f~~~~~~~~~~wr~vv~~ 345 (426)
|+.+|+++|+++|||++|+|.++|++++++||+||..
T Consensus 155 ~~yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ 234 (291)
T PF00393_consen 155 ISYAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSL 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHcCCchhhhHhhhhhHhhhccCCCchHHHHHhhhhccccccccccCCCccccccC
Q 043238 346 AISAGISTPGMCASLSYFDTYRRARLPANLVQAQRDLFGAHAYERIDRPGSFHTEWT 402 (426)
Q Consensus 346 ~~~~~~~~p~~saal~y~~~~~~~~l~~nliqaqrD~fgah~~~r~d~~g~~h~~w~ 402 (426)
|+++|+|+|++||||+|||+||+++||+|||||||||||||||||+|++|.|||+|+
T Consensus 235 ai~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 235 AIEAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHHHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HHHcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999995
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-55 Score=405.56 Aligned_cols=265 Identities=30% Similarity=0.471 Sum_probs=233.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC--------CCcE---ecCCch
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH--------PTPQ---IHHHRP 75 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~vI---v~~g~~ 75 (426)
|+||+||||.||.+|+++|.++||+|.+||++++.++++.+.++.. +.+++ ||+| ||+|++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~--------a~sl~el~~~L~~pr~vWlMvPag~i 72 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATG--------AASLDELVAKLSAPRIVWLMVPAGDI 72 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCcc--------ccCHHHHHHhcCCCcEEEEEccCCCc
Confidence 5899999999999999999999999999999999999999887543 33332 8888 999999
Q ss_pred HHHHHhhcCCC------------ccccchhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHHh
Q 043238 76 LGETSGTSTPS------------AVSMKPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRV 135 (426)
Q Consensus 76 vd~vl~~l~p~------------s~~~~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~i 135 (426)
+++||++|.|. |+|+|+.|| ++|+|++.|||..|++.|-++|+|||+++|++++|+|+.+
T Consensus 73 t~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~l 152 (300)
T COG1023 73 TDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKAL 152 (300)
T ss_pred hHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhh
Confidence 99999988776 999999998 9999999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhcccchh-hHHHHHhHHh
Q 043238 136 AAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKH-VGGVSNAELAEIFDEWNKGELE-SFLVQITADI 213 (426)
Q Consensus 136 aa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-~g~ld~~~ia~if~~W~~G~i~-S~L~ei~~~i 213 (426)
+. |+.-..|+||.|+|||+|||||+|||++||+|+|+|.|+++ ..++|.++++++ ||.|..+ |||++.+.++
T Consensus 153 A~---ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v---W~hGSVIrSWLldLt~~A 226 (300)
T COG1023 153 AP---GEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV---WNHGSVIRSWLLDLTAEA 226 (300)
T ss_pred Cc---CcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH---HhCcchHHHHHHHHHHHH
Confidence 93 33468899999999999999999999999999999999997 567999999999 9999876 9999999999
Q ss_pred hhccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccccccc
Q 043238 214 FKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGV 293 (426)
Q Consensus 214 l~~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~ 293 (426)
|++.+ -++.+..-+...|+|+|++++|+++|+|+|+|+.|+++||-|--.++ -+.
T Consensus 227 f~~d~------~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~--f~~----------------- 281 (300)
T COG1023 227 FKKDP------DLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT--FAG----------------- 281 (300)
T ss_pred HhhCC------CHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchhh--HHH-----------------
Confidence 98643 35777778888999999999999999999999999999987643322 222
Q ss_pred ccchhHHHHHHHHHHHHHHHhc
Q 043238 294 HVDKKRLIDDVRQALIKNAYQR 315 (426)
Q Consensus 294 ~~~~~~~i~~~rda~i~~~y~~ 315 (426)
..+.++|+.|+.|+-++
T Consensus 282 -----kvlaalR~~FGgH~vk~ 298 (300)
T COG1023 282 -----KVLAALRNEFGGHAVKK 298 (300)
T ss_pred -----HHHHHHHHHhCCccccc
Confidence 24789999999887654
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=2.4e-52 Score=413.06 Aligned_cols=269 Identities=26% Similarity=0.415 Sum_probs=211.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcc-cccCCCC-CCcE---ecCCchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHS-QGLRPLH-PTPQ---IHHHRPLGETSG 81 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~vI---v~~g~~vd~vl~ 81 (426)
|+|||||+|.||.+||++|+++|++|.+|||++++++++.+.+.... ... ...+.++ +++| ||++ ++++|++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~--~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~ 77 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGV--ANLRELSQRLSAPRVVWVMVPHG-IVDAVLE 77 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCccc--CCHHHHHhhcCCCCEEEEEcCch-HHHHHHH
Confidence 37999999999999999999999999999999999999987654321 011 1111111 4554 7887 8888887
Q ss_pred hcCCC-----------cc-ccchhhh--------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHHhhcccCC
Q 043238 82 TSTPS-----------AV-SMKPVRR--------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDD 141 (426)
Q Consensus 82 ~l~p~-----------s~-~~~t~rr--------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~iaa~~~~ 141 (426)
++.+. +. +.++.++ ++|+|+|||||+.+|+.|+++|+||++++|++++|+|+.++.+.
T Consensus 78 ~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~~~~-- 155 (298)
T TIGR00872 78 ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEE-- 155 (298)
T ss_pred HHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhcCcC--
Confidence 65443 33 3444443 78999999999999999999999999999999999999999421
Q ss_pred CCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhcccch-hhHHHHHhHHhhhccCC
Q 043238 142 GPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKH-VGGVSNAELAEIFDEWNKGEL-ESFLVQITADIFKVKDE 219 (426)
Q Consensus 142 ~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-~g~ld~~~ia~if~~W~~G~i-~S~L~ei~~~il~~~~~ 219 (426)
..++|+|+.|+|+++|++||+++++.|++++|++.|+++ +|++|+++++++ |+.||+ .|++++++.++|++++
T Consensus 156 -~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~- 230 (298)
T TIGR00872 156 -QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP- 230 (298)
T ss_pred -CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC-
Confidence 258999999999999999999999999999999999999 457999999999 999995 7999999989997543
Q ss_pred CCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhH
Q 043238 220 YGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKR 299 (426)
Q Consensus 220 ~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~ 299 (426)
.++.+.+.+.+++++
T Consensus 231 -----~~~~~~~~~~~~~~~------------------------------------------------------------ 245 (298)
T TIGR00872 231 -----DLAEFSGRVSDSGEG------------------------------------------------------------ 245 (298)
T ss_pred -----cHHHHHHHHHhhccH------------------------------------------------------------
Confidence 122222233333333
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHhHHHHHHHHHHcCCchhhhHhhhhhHhhhccC-CCchHHHHH
Q 043238 300 LIDDVRQALIKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSYFDTYRRA-RLPANLVQA 378 (426)
Q Consensus 300 ~i~~~rda~i~~~y~~~~~~~nll~~~~f~~~~~~~~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~-~l~~nliqa 378 (426)
|.+|..|++.|+|+|++++||.|++.++++ ++|+|||||
T Consensus 246 ----------------------------------------r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~ 285 (298)
T TIGR00872 246 ----------------------------------------RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAA 285 (298)
T ss_pred ----------------------------------------HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 445555555666666666666666677777 899999999
Q ss_pred hhhhcccccccc
Q 043238 379 QRDLFGAHAYER 390 (426)
Q Consensus 379 qrD~fgah~~~r 390 (426)
||||||+|||++
T Consensus 286 ~r~~fg~h~~~~ 297 (298)
T TIGR00872 286 LRKEFGGHAEKK 297 (298)
T ss_pred HHHhhCCCCcCC
Confidence 999999999987
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.3e-45 Score=365.56 Aligned_cols=272 Identities=26% Similarity=0.412 Sum_probs=210.6
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-CCcE---ecCCchHHHHHhh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-PTPQ---IHHHRPLGETSGT 82 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~vI---v~~g~~vd~vl~~ 82 (426)
|+|||||+|.||++||++|+++|++|++|||++++++++.+.+.... ++.-..+.... +++| +|+++.++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~-~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGA-DSLEELVAKLPAPRVVWLMVPAGEITDATIDE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeec-CCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH
Confidence 37999999999999999999999999999999999999877654321 01111112111 3443 8888777777654
Q ss_pred c----CCC-------ccccchhhh---------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHHhhcccCCC
Q 043238 83 S----TPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG 142 (426)
Q Consensus 83 l----~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~iaa~~~~~ 142 (426)
+ .++ +..|.+.++ ++|+|+||+||+.+|+.|+++|+||+++++++++|+|+.++.+.+
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~~-- 157 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAE-- 157 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHccccc--
Confidence 4 333 556655543 889999999999999999999999999999999999999992110
Q ss_pred CcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHhcccch-hhHHHHHhHHhhhccCCC
Q 043238 143 PCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKH-VGGVSNAELAEIFDEWNKGEL-ESFLVQITADIFKVKDEY 220 (426)
Q Consensus 143 ~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-~g~ld~~~ia~if~~W~~G~i-~S~L~ei~~~il~~~~~~ 220 (426)
.+++|+|+.|+|+++|+++|+++++.+++++|++.|+++ .+|+|++++.++ |+.||+ .|++++.+.+++.+++.
T Consensus 158 ~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~~- 233 (301)
T PRK09599 158 DGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV---WRRGSVIRSWLLDLTADALAEDPK- 233 (301)
T ss_pred CCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCCC-
Confidence 179999999999999999999999999999999999997 345999999998 999984 79999988788753211
Q ss_pred CCCcc-hhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhH
Q 043238 221 GEGEL-VDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKR 299 (426)
Q Consensus 221 ~~~~l-ld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~ 299 (426)
+. +..+.++ ++
T Consensus 234 ---~~~~~~~~kd---~~-------------------------------------------------------------- 245 (301)
T PRK09599 234 ---LDEISGYVED---SG-------------------------------------------------------------- 245 (301)
T ss_pred ---HHHHHHHHHh---hC--------------------------------------------------------------
Confidence 10 0001111 11
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHhHHHHHHHHHHcCCchhhhHhhhhh-HhhhccCCCchHHHHH
Q 043238 300 LIDDVRQALIKNAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLSY-FDTYRRARLPANLVQA 378 (426)
Q Consensus 300 ~i~~~rda~i~~~y~~~~~~~nll~~~~f~~~~~~~~~~wr~vv~~~~~~~~~~p~~saal~y-~~~~~~~~l~~nliqa 378 (426)
+ .|.++..|.+.|+|+|.+++++.| |+++....+|.|++||
T Consensus 246 -------------------------------------~-~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a 287 (301)
T PRK09599 246 -------------------------------------E-GRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAA 287 (301)
T ss_pred -------------------------------------c-HHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 1 255666677777777777777777 7788888899999999
Q ss_pred hhhhccccccccc
Q 043238 379 QRDLFGAHAYERI 391 (426)
Q Consensus 379 qrD~fgah~~~r~ 391 (426)
||||||+|+|+|.
T Consensus 288 ~~~~fg~h~~~~~ 300 (301)
T PRK09599 288 LRNGFGGHAVKKK 300 (301)
T ss_pred HHHhcCCCCccCC
Confidence 9999999999995
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=3.4e-41 Score=327.66 Aligned_cols=240 Identities=21% Similarity=0.321 Sum_probs=207.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc-hHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHh--
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK-VDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSG-- 81 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~-- 81 (426)
++|||||||.||.+||.||.++||+|+||||++++ .+.+.+.|+... .++...+... +.+| |+++++|++|+-
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a-~s~~eaa~~a-DvVitmv~~~~~V~~V~~g~ 78 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVA-ASPAEAAAEA-DVVITMLPDDAAVRAVLFGE 78 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCccc-CCHHHHHHhC-CEEEEecCCHHHHHHHHhCc
Confidence 48999999999999999999999999999999999 555555565432 1111122221 4555 999999999883
Q ss_pred -----hcCCC-------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhccc
Q 043238 82 -----TSTPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHV 139 (426)
Q Consensus 82 -----~l~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~~ 139 (426)
.++|+ |+.|++.++ ++|+|+|||||+.+|..|. ++|+||++++|++++|+|+.++
T Consensus 79 ~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g--- 155 (286)
T COG2084 79 NGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMG--- 155 (286)
T ss_pred cchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhc---
Confidence 34455 889998887 8999999999999999999 9999999999999999999999
Q ss_pred CCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccCC
Q 043238 140 DDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDE 219 (426)
Q Consensus 140 ~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~ 219 (426)
++++|+|+.|+|+.+||+||.+..+.+++++|++.|+++.| +|++.+.++ .++|...||.++.+.+.+.+ .+
T Consensus 156 ---~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~v---i~~~~~~s~~~e~~~~~m~~-~~ 227 (286)
T COG2084 156 ---KNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEV---ISGGAAGSWILENYGPRMLE-GD 227 (286)
T ss_pred ---CceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HhccccCChHHHhhcchhhc-CC
Confidence 88999999999999999999999999999999999999998 999999999 67888889999988777765 45
Q ss_pred CCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 043238 220 YGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSG 267 (426)
Q Consensus 220 ~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~ 267 (426)
|.+.|.++.++||+. ++.+.|.+.|+|+|+.+.+.+ .|+.
T Consensus 228 ~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~~~--ly~~ 267 (286)
T COG2084 228 FSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALAAE--LYAK 267 (286)
T ss_pred CCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHHHH--HHHH
Confidence 889999999999999 999999999999999888776 5543
No 12
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=4.1e-40 Score=325.92 Aligned_cols=272 Identities=26% Similarity=0.397 Sum_probs=216.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-CCcE---ecCCchHHHHHhh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-PTPQ---IHHHRPLGETSGT 82 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~vI---v~~g~~vd~vl~~ 82 (426)
|+|||||+|.||.+||.+|+++|++|.+|||++++++++.+.+.... ++.-..++..+ +++| +|+++.++++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~-~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITAR-HSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeec-CCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 37999999999999999999999999999999999998876653321 11111111111 2333 8888788888766
Q ss_pred cC----CC-------ccccchhhh---------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHHhhcccCCC
Q 043238 83 ST----PS-------AVSMKPVRR---------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHVDDG 142 (426)
Q Consensus 83 l~----p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~iaa~~~~~ 142 (426)
+. ++ |..|.+.++ ++|+|+||+||+.+|+.|.++|+||+++++++++|+|+.++.+.
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~--- 156 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPEG--- 156 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCcC---
Confidence 54 33 556655554 78999999999999999999999999999999999999999310
Q ss_pred CcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhcccc-hhhHHHHHhHHhhhccCCC
Q 043238 143 PCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHV-GGVSNAELAEIFDEWNKGE-LESFLVQITADIFKVKDEY 220 (426)
Q Consensus 143 ~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~-g~ld~~~ia~if~~W~~G~-i~S~L~ei~~~il~~~~~~ 220 (426)
++++|+|+.|+|+++|+++|.+.++.+++++|++.|+++. |++|++++.++ |+.|+ +.|++++...+++.++ ++
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~-~~ 232 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL---WRNGSVIRSWLLDLTVKALAED-PK 232 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH---HcCCcHHHHHHHHHHHHHHhhC-CC
Confidence 2799999999999999999999999999999999999985 47999999998 99876 6799999888888643 22
Q ss_pred CCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhHH
Q 043238 221 GEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRL 300 (426)
Q Consensus 221 ~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
.+.++...||+ ++..|+++.|.+.|+|+|+++++++.|+.+..+ +.+. .+.
T Consensus 233 --~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~--~~~~----------------------~~~ 283 (299)
T PRK12490 233 --LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQED--DSFH----------------------MKV 283 (299)
T ss_pred --hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcc--CChH----------------------HHH
Confidence 24567777764 466799999999999999999998755554333 3331 234
Q ss_pred HHHHHHHHHHHHHhc
Q 043238 301 IDDVRQALIKNAYQR 315 (426)
Q Consensus 301 i~~~rda~i~~~y~~ 315 (426)
+|++||+|++|+|+.
T Consensus 284 ~~a~~~~f~~~~~~~ 298 (299)
T PRK12490 284 VSALRNQFGGHAVKT 298 (299)
T ss_pred HHHHHHhhCCCCCCC
Confidence 899999999999964
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=307.76 Aligned_cols=243 Identities=19% Similarity=0.291 Sum_probs=209.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHh--
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSG-- 81 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~-- 81 (426)
.++|||||||+||++|+.||.++||+|+||||+.+++++|.+.|+... +++..++++. +.+| |++...+++++.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~-~sPaeVae~s-Dvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVA-NSPAEVAEDS-DVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhh-CCHHHHHhhc-CEEEEEcCChHhhHHHhcCC
Confidence 468999999999999999999999999999999999999999887642 2233333332 4455 888888888863
Q ss_pred -----hcCCC--------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhcc
Q 043238 82 -----TSTPS--------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAH 138 (426)
Q Consensus 82 -----~l~p~--------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~ 138 (426)
.+.|+ |+.|++.+. .+|||+|||||..+|+.|. +||+|||++.|+++.|+|+.++
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mG-- 190 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMG-- 190 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhc--
Confidence 33343 778887764 8999999999999999999 9999999999999999999999
Q ss_pred cCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccC
Q 043238 139 VDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKD 218 (426)
Q Consensus 139 ~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~ 218 (426)
++++|+|..|.|+.+|+++|.+....|..++|++.|+.+.| +|...+.+|+ +.|..-|..++...+-+.+ .
T Consensus 191 ----k~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~~~p~m~k-~ 261 (327)
T KOG0409|consen 191 ----KNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYNPVPGMLK-G 261 (327)
T ss_pred ----ceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhCcCchhhc-C
Confidence 89999999999999999999999999999999999999998 9999999994 6676667777777666654 4
Q ss_pred CCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhhhh
Q 043238 219 EYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSGLK 269 (426)
Q Consensus 219 ~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k 269 (426)
+|.+.|.++.+.||++ ++..+|.+.++|+|..+.|.+ .|..++
T Consensus 262 dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA~q--ly~~~~ 304 (327)
T KOG0409|consen 262 DYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLAHQ--LYKSMK 304 (327)
T ss_pred CCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHHHH--HHHHHH
Confidence 5999999999999999 999999999999999999987 655544
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=8e-35 Score=287.17 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=196.2
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHhh---
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGT--- 82 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~--- 82 (426)
+|||||+|.||.+||++|+++||+|.+|||+++ .+++.+.+.... .+....+... +.+| ||+++++++|+..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~-~s~~~~~~~a-dvVi~~v~~~~~v~~v~~~~~g 78 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSV-ETARQVTEAS-DIIFIMVPDTPQVEEVLFGENG 78 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeec-CCHHHHHhcC-CEEEEeCCChHHHHHHHcCCcc
Confidence 799999999999999999999999999999985 566765554321 0111111110 3344 8888888888732
Q ss_pred ----cCCC-------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhcccCC
Q 043238 83 ----STPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHVDD 141 (426)
Q Consensus 83 ----l~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~~~~ 141 (426)
+.|+ |+.|++.++ +.|+|+||+||+.+|+.|. ++|+||+++++++++|+|+.++
T Consensus 79 ~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g----- 153 (292)
T PRK15059 79 CTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLG----- 153 (292)
T ss_pred hhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHc-----
Confidence 3444 778877664 7899999999999999999 9999999999999999999999
Q ss_pred CCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccCCCC
Q 043238 142 GPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDEYG 221 (426)
Q Consensus 142 ~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~~~ 221 (426)
++++|+|+.|+|+.+|+++|.+..+.+++++|++.++++.| +|++++.++ ++.+...|++.+...+.+.. ++|.
T Consensus 154 -~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~---l~~~~~~s~~~~~~~~~~~~-~~~~ 227 (292)
T PRK15059 154 -KNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQA---LMGGFASSRILEVHGERMIK-RTFN 227 (292)
T ss_pred -CCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHcCcccCHHHHhhchhhhc-CCCC
Confidence 78999999999999999999999999999999999999987 999999999 56777778888877766653 5678
Q ss_pred CCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 222 EGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 222 ~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+.|.++.+.||+. ++++.|.+.|+|+|....+..
T Consensus 228 ~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~~~~ 261 (292)
T PRK15059 228 PGFKIALHQKDLN------LALQSAKALALNLPNTATCQE 261 (292)
T ss_pred CCCchHHHHHHHH------HHHHHHHHcCCCChHHHHHHH
Confidence 8899999999999 999999999999999877665
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-33 Score=276.36 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=192.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHhh--
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGT-- 82 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~-- 82 (426)
++|||||+|.||.+||.+|+++|++|.+|||++++++++.+.+.... .+........ +.+| ||+...++.++..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~-~s~~~~~~~a-DvVi~~vp~~~~~~~vl~~~~ 79 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPA-ASPAQAAAGA-EFVITMLPNGDLVRSVLFGEN 79 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCccc-CCHHHHHhcC-CEEEEecCCHHHHHHHHcCcc
Confidence 58999999999999999999999999999999999999887654321 0111111111 3344 8887778877642
Q ss_pred -----cCCC-------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhcccC
Q 043238 83 -----STPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHVD 140 (426)
Q Consensus 83 -----l~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~~~ 140 (426)
+.++ |..|.+.++ +.|+|+||+||+.+|+.|. ++|+||+++++++++|+|+.++
T Consensus 80 ~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g---- 155 (296)
T PRK15461 80 GVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMG---- 155 (296)
T ss_pred cHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHc----
Confidence 3343 777777655 8899999999999999999 8999999999999999999999
Q ss_pred CCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHh-HHhhhccCC
Q 043238 141 DGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQIT-ADIFKVKDE 219 (426)
Q Consensus 141 ~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~-~~il~~~~~ 219 (426)
+.++|+|+.|+|+.+|+++|.+..+.+.+++|++.++++.| +|++.+.+++ +.+...+...... .+.+.+ ++
T Consensus 156 --~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l---~~~~~~~~~~~~~~~~~~~~-~~ 228 (296)
T PRK15461 156 --NELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVM---SGTAAGKGHFTTTWPNKVLK-GD 228 (296)
T ss_pred --CCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccChHHHccccchhcc-CC
Confidence 78999999999999999999999999999999999999987 9999999994 4444333333322 224443 55
Q ss_pred CCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 220 YGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 220 ~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
|.++|.++.+.||+. ++.+.|.+.|+|+|+...+..
T Consensus 229 ~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~~~ 264 (296)
T PRK15461 229 LSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAASRE 264 (296)
T ss_pred CCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHHHH
Confidence 788999999999999 999999999999999887765
No 16
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=1.2e-32 Score=271.23 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=191.3
Q ss_pred EEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHH---hh---
Q 043238 11 LAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETS---GT--- 82 (426)
Q Consensus 11 ~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl---~~--- 82 (426)
|||+|.||.+||.+|+++||+|.+|||++++++.+.+.+.... ++........ +.+| ||+++.+++++ +.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~-~s~~~~~~~a-dvVil~vp~~~~~~~v~~g~~~l~~ 78 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAA-ASPAEAAEGA-DRVITMLPAGQHVISVYSGDEGILP 78 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeec-CCHHHHHhcC-CEEEEeCCChHHHHHHHcCcchHhh
Confidence 6999999999999999999999999999999999887654321 0111111111 3344 88878888877 33
Q ss_pred -cCCC-------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhcccCCCCc
Q 043238 83 -STPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHVDDGPC 144 (426)
Q Consensus 83 -l~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~~~~~~~ 144 (426)
+.++ |+.|++.++ ++|+|+||+||+.+|+.|. ++|+||+++.+++++|+|+.++ ++
T Consensus 79 ~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g------~~ 152 (288)
T TIGR01692 79 KVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG------RN 152 (288)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc------CC
Confidence 3343 777777665 7899999999999999999 9999999999999999999999 78
Q ss_pred EEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHh------hhccC
Q 043238 145 ITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADI------FKVKD 218 (426)
Q Consensus 145 v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~i------l~~~~ 218 (426)
++|+|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++.+.++ ++.+...|+..+...+. ...++
T Consensus 153 ~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 228 (288)
T TIGR01692 153 IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEI---ANTSSGRCWSSDTYNPVPGVMPQAPASN 228 (288)
T ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HhcCCccCcHHHHhCCCccccccccccC
Confidence 999999999999999999999999999999999999988 999999999 56666667766544221 11234
Q ss_pred CCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 219 EYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 219 ~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+|.++|.++.+.||+. ++.+.|.+.|+|+|+...+..
T Consensus 229 ~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~~~ 265 (288)
T TIGR01692 229 GYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALARQ 265 (288)
T ss_pred CCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHHHH
Confidence 5788899999999998 999999999999999877765
No 17
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.2e-32 Score=314.21 Aligned_cols=238 Identities=16% Similarity=0.249 Sum_probs=202.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHH--
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETS-- 80 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl-- 80 (426)
...+|||||||.||.+||.||+++||+|.||||++++++++.+.|+... ++....+... +.+| |++++++++|+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~-~s~~e~a~~a-dvVi~~l~~~~~v~~V~~g 80 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRC-DSPAEAAKDA-AALVVVLSHPDQVDDVFFG 80 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeec-CCHHHHHhcC-CEEEEEcCChHHHHHHHhc
Confidence 3457999999999999999999999999999999999999998775431 1111112211 3344 89999999886
Q ss_pred -----hhcCCC-------ccccchhhh-----------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhh
Q 043238 81 -----GTSTPS-------AVSMKPVRR-----------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVA 136 (426)
Q Consensus 81 -----~~l~p~-------s~~~~t~rr-----------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~ia 136 (426)
+.+.++ |+.|++.++ +.|+|+|||||+.+|+.|. ++|+||+++++++++|+|+.++
T Consensus 81 ~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g 160 (1378)
T PLN02858 81 DEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMC 160 (1378)
T ss_pred hhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhc
Confidence 234554 788887775 4599999999999999999 9999999999999999999999
Q ss_pred cccCCCCcEEEe-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhh
Q 043238 137 AHVDDGPCITYI-GEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFK 215 (426)
Q Consensus 137 a~~~~~~~v~~v-G~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~ 215 (426)
..++|+ |+.|+|+.+|+++|.+.++.+++++|++.|+++.| +|++.+.++ .+.|...|+..+...+.+.
T Consensus 161 ------~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~v---l~~s~g~s~~~~~~~~~~~ 230 (1378)
T PLN02858 161 ------QKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDI---ISNAAGSSWIFKNHVPLLL 230 (1378)
T ss_pred ------CceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HhcCCccCHHHHhhhhHhh
Confidence 677764 99999999999999999999999999999999988 999999999 5777778888887766665
Q ss_pred ccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 216 VKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 216 ~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+ ++|.++|.++.+.||+. ++++.|.+.|+|+|+...+..
T Consensus 231 ~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a~~ 269 (1378)
T PLN02858 231 K-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVAHQ 269 (1378)
T ss_pred c-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHHHH
Confidence 4 56888999999999999 999999999999999887765
No 18
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.97 E-value=2.6e-30 Score=255.11 Aligned_cols=238 Identities=18% Similarity=0.278 Sum_probs=195.4
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHH--
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETS-- 80 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl-- 80 (426)
|+++|||||+|.||.+||.+|+++|++|.+|||++++.+++.+.+.... .+.-...... +.+| +|....++.++
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~-~~~~e~~~~~-d~vi~~vp~~~~~~~v~~~ 78 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETA-STAKAVAEQC-DVIITMLPNSPHVKEVALG 78 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeec-CCHHHHHhcC-CEEEEeCCCHHHHHHHHcC
Confidence 4578999999999999999999999999999999999988876553211 0000111111 3344 77777777765
Q ss_pred -----hhcCCC-------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhcc
Q 043238 81 -----GTSTPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAH 138 (426)
Q Consensus 81 -----~~l~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~ 138 (426)
..+.++ |..|.+.++ ++|+|+||+||+..+..|. .+|+||+++++++++++|+.++
T Consensus 79 ~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~-- 156 (296)
T PRK11559 79 ENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMA-- 156 (296)
T ss_pred cchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc--
Confidence 234444 566665543 7899999999999999998 9999999999999999999999
Q ss_pred cCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccC
Q 043238 139 VDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKD 218 (426)
Q Consensus 139 ~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~ 218 (426)
.+++++|+.|+|+.+|+++|.+.++.+.+++|++.++++.| +|.+++.++ |+.+...|++.+...+.+.+ .
T Consensus 157 ----~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~---l~~~~~~s~~~~~~~~~~~~-~ 227 (296)
T PRK11559 157 ----GSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQA---IRGGLAGSTVLDAKAPMVMD-R 227 (296)
T ss_pred ----CCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HhcCcccCHHHHhhchHhhc-C
Confidence 67899999999999999999999999999999999999987 999999888 77777778887766555543 4
Q ss_pred CCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 219 EYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 219 ~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+|.++|.++...||+. .+++.|.+.|+|+|.+..+..
T Consensus 228 d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~~~ 264 (296)
T PRK11559 228 NFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAVME 264 (296)
T ss_pred CCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHHHH
Confidence 5778899999999998 899999999999999888776
No 19
>PLN02858 fructose-bisphosphate aldolase
Probab=99.97 E-value=2.2e-30 Score=297.85 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=201.1
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHH
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGE 78 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~ 78 (426)
|+.++.++|||||||.||.+||.||+++||+|.+|||++++++++.+.++... ++....+... +.+| ||+++++++
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~-~s~~e~~~~a-DvVi~~V~~~~~v~~ 396 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAG-NSPAEVAKDV-DVLVIMVANEVQAEN 396 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeec-CCHHHHHhcC-CEEEEecCChHHHHH
Confidence 66667789999999999999999999999999999999999999987764321 1111112121 3344 888888888
Q ss_pred HH-------hhcCCC-------ccccchhhh-----------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHH
Q 043238 79 TS-------GTSTPS-------AVSMKPVRR-----------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDIL 132 (426)
Q Consensus 79 vl-------~~l~p~-------s~~~~t~rr-----------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL 132 (426)
|+ ..+.++ |+.|++.++ ++|+|+||+||+.+|+.|. ++|+||++++|++++|+|
T Consensus 397 Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL 476 (1378)
T PLN02858 397 VLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVL 476 (1378)
T ss_pred HHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHH
Confidence 86 234454 778877654 6799999999999999999 999999999999999999
Q ss_pred HHhhcccCCCCcEEEe-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhH
Q 043238 133 QRVAAHVDDGPCITYI-GEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITA 211 (426)
Q Consensus 133 ~~iaa~~~~~~~v~~v-G~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~ 211 (426)
+.++ ..++|+ |+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.++ .+.+...|+..+...
T Consensus 477 ~~lg------~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~ev---l~~s~g~s~~~~~~~ 546 (1378)
T PLN02858 477 SALS------EKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDI---ISNAGGTSWMFENRV 546 (1378)
T ss_pred HHHh------CcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHhhcccChhhhhcc
Confidence 9999 677775 67999999999999999999999999999999987 999999999 466666777777665
Q ss_pred HhhhccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 212 DIFKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 212 ~il~~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+.+.. ++|.+.|.++.+.||+. ++.+.|.+.|+|+|+...+..
T Consensus 547 ~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~~~ 589 (1378)
T PLN02858 547 PHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVAHQ 589 (1378)
T ss_pred chhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHHHH
Confidence 55553 56788899999999999 999999999999999877765
No 20
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.97 E-value=9.1e-30 Score=250.84 Aligned_cols=235 Identities=18% Similarity=0.276 Sum_probs=194.3
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHH-----
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETS----- 80 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl----- 80 (426)
+|||||+|.||.+||.+|+++|++|++|||++++++.+.+.+.... .+....+.+. +.+| ||+...++.++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-~~~~~~~~~a-Divi~~vp~~~~~~~v~~~~~~ 78 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTA-ETARQVTEQA-DVIFTMVPDSPQVEEVAFGENG 78 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCccc-CCHHHHHhcC-CEEEEecCCHHHHHHHHcCcch
Confidence 5999999999999999999999999999999999999887654321 0000111111 3444 88877777665
Q ss_pred --hhcCCC-------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhcccCC
Q 043238 81 --GTSTPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHVDD 141 (426)
Q Consensus 81 --~~l~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~~~~ 141 (426)
..+.++ +..|.+.++ ++|+|+||+|++.++..|. .+|+||+++++++++++|+.++
T Consensus 79 ~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg----- 153 (291)
T TIGR01505 79 IIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALG----- 153 (291)
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhc-----
Confidence 233444 555655443 7899999999999999998 9999999999999999999999
Q ss_pred CCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccCCCC
Q 043238 142 GPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDEYG 221 (426)
Q Consensus 142 ~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~~~ 221 (426)
.+++++|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.++ ++.+...|++++.+.+.+.. ++|.
T Consensus 154 -~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~---l~~~~~~s~~~~~~~~~~~~-~~~~ 227 (291)
T TIGR01505 154 -KNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQA---LRGGLAGSTVLEVKGERVID-RTFK 227 (291)
T ss_pred -CCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHH---HhcCcccCHHHHhhChhhhc-CCCC
Confidence 78999999999999999999999999999999999999987 999999999 56666678888877666553 4577
Q ss_pred CCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 222 EGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 222 ~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+.|.++...||+. ++...|.+.|+|+|+...+..
T Consensus 228 ~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~~~ 261 (291)
T TIGR01505 228 PGFRIDLHQKDLN------LALDSAKAVGANLPNTATVQE 261 (291)
T ss_pred CCcchHHHHHHHH------HHHHHHHHcCCCChhHHHHHH
Confidence 8899999999998 999999999999999888865
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.92 E-value=4e-26 Score=206.63 Aligned_cols=131 Identities=24% Similarity=0.430 Sum_probs=106.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC------CCcE--ecCCchHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH------PTPQ--IHHHRPLG 77 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~vI--v~~g~~vd 77 (426)
|++|||||+|.||++||+||+++||+|++|||++++.+++.+.+.. .+.+++ +.+| |+++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~--------~~~s~~e~~~~~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAE--------VADSPAEAAEQADVVILCVPDDDAVE 72 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEE--------EESSHHHHHHHBSEEEE-SSSHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhh--------hhhhhhhHhhcccceEeecccchhhh
Confidence 5799999999999999999999999999999999999999987643 345544 3344 89989999
Q ss_pred HHHhh--c----CCC-------ccccchhhh---------hhccccCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHH
Q 043238 78 ETSGT--S----TPS-------AVSMKPVRR---------VCFISAWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQR 134 (426)
Q Consensus 78 ~vl~~--l----~p~-------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~ 134 (426)
+++.. + .++ |..|++.++ ++|+|+||+||+.+|++|+ ++|+||++++|++++|+|+.
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~ 152 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEA 152 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHH
T ss_pred hhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHH
Confidence 98776 4 333 777776665 8999999999999999999 99999999999999999999
Q ss_pred hhcccCCCCcEE-EeCC
Q 043238 135 VAAHVDDGPCIT-YIGE 150 (426)
Q Consensus 135 iaa~~~~~~~v~-~vG~ 150 (426)
++ .+++ |+||
T Consensus 153 ~~------~~v~~~~G~ 163 (163)
T PF03446_consen 153 MG------KNVYHYVGP 163 (163)
T ss_dssp HE------EEEEEE-ES
T ss_pred Hh------CCceeeeCc
Confidence 99 6788 5586
No 22
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.92 E-value=8.6e-25 Score=227.14 Aligned_cols=166 Identities=14% Similarity=0.222 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHH
Q 043238 121 SFEAYNNIRDILQRVAAHVDDGPCITYIGEGGS-----GNFVKMVHNGIEYGDMQLISQAYDVLKH-----VGGVSNAEL 190 (426)
Q Consensus 121 ~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Ga-----g~~vKmv~N~i~~~~m~~iAEa~~Ll~~-----~g~ld~~~i 190 (426)
.++++.++.+.++....+. ...+.||.+. +|++|+|||+|++++|++|+|||.|+++ .|++|+.++
T Consensus 270 ~~AvfaR~~S~~k~~r~~~----~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~i 345 (459)
T PRK09287 270 TEAVFARYLSSLKDQRVAA----SKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEI 345 (459)
T ss_pred HHHHHHHhccccHHHHHHh----hcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 6788999999888766432 2345566554 8999999999999999999999999998 899999999
Q ss_pred HHHHHHhcccchh-hHHHHHhHHhhhccCCCCCCcchhhHHHhhc-ccchH-HHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 043238 191 AEIFDEWNKGELE-SFLVQITADIFKVKDEYGEGELVDKILDKTG-MKGTR-KWTIQQAAELLVAALTIAASLDCRYLSG 267 (426)
Q Consensus 191 a~if~~W~~G~i~-S~L~ei~~~il~~~~~~~~~~lld~i~kd~~-qkgtg-~w~v~~A~~~gvp~P~isaAl~~r~~s~ 267 (426)
++| |++|||+ |+|++...++|.++++ ..+++++..+.... ..+.+ +|++..|.+.|+|+|++++|+. |+++
T Consensus 346 a~i---Wr~GcIIRs~lL~~i~~a~~~~~~-l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~--y~d~ 419 (459)
T PRK09287 346 ARI---WRGGCIIRAQFLQKITDAYEANPD-LANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALS--YYDS 419 (459)
T ss_pred HHH---hCCCCEEeHHHHHHHHHHHHhCCC-chhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHH--HHHH
Confidence 999 9999998 7777666699987654 56788888887555 44555 6799999999999999999998 9999
Q ss_pred hhhhhhHHHHhhhhccccccccccccccchhHHHHHHHHHHHHHHHhcCCCC
Q 043238 268 LKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALIKNAYQRNPNL 319 (426)
Q Consensus 268 ~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~rda~i~~~y~~~~~~ 319 (426)
++++|.+++. ||+|||+|++|+|+|.|+.
T Consensus 420 ~~~~~~~anl-----------------------iqaqRd~FGaH~~~r~d~~ 448 (459)
T PRK09287 420 YRTARLPANL-----------------------IQAQRDYFGAHTYERTDKE 448 (459)
T ss_pred hhcCCccHHH-----------------------HHHHHhHhCCCCcccCCCC
Confidence 9999999876 8999999999999999875
No 23
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.90 E-value=7.9e-24 Score=220.72 Aligned_cols=166 Identities=14% Similarity=0.177 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCC--------chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCH
Q 043238 121 SFEAYNNIRDILQRVAAHVDDGPCITYIGEG--------GSGNFVKMVHNGIEYGDMQLISQAYDVLKH-----VGGVSN 187 (426)
Q Consensus 121 ~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~--------Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-----~g~ld~ 187 (426)
....+.++.+.++....+. ...+.||. +.+|++|+|||++++++|++|+|||+|+++ .|++|+
T Consensus 281 ~~a~~~R~~S~~k~~r~~~----~~~~~gp~~~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl 356 (470)
T PTZ00142 281 AASVDARNISALKEERTKA----SSHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNL 356 (470)
T ss_pred HHHHHHHHhhhhHHHHHHh----ccccCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 5677888888887755332 12234443 789999999999999999999999999995 789999
Q ss_pred HHHHHHHHHhcccchh-hHHHHHhHHhhhccCCCCCCcchhhHHHhhc-ccchH-HHHHHHHHHcCCChhHHHHHHHHHH
Q 043238 188 AELAEIFDEWNKGELE-SFLVQITADIFKVKDEYGEGELVDKILDKTG-MKGTR-KWTIQQAAELLVAALTIAASLDCRY 264 (426)
Q Consensus 188 ~~ia~if~~W~~G~i~-S~L~ei~~~il~~~~~~~~~~lld~i~kd~~-qkgtg-~w~v~~A~~~gvp~P~isaAl~~r~ 264 (426)
.++++| |++|||+ |.|++...++|.++++ ..+++++..+.... ..+.+ +|++..|.+.|+|+|++++|+. |
T Consensus 357 ~~ia~i---Wr~GcIIRs~lL~~i~~a~~~~~~-l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~--y 430 (470)
T PTZ00142 357 GEIARI---WRGGCIIRAVFLDRIKNAFKKNPQ-LDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLA--Y 430 (470)
T ss_pred HHHHHH---hCCCceeeHhHHHHHHHHHhcCCC-hhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHH--H
Confidence 999999 9999998 7777666699986554 56778888777555 44455 5799999999999999999999 9
Q ss_pred HhhhhhhhhHHHHhhhhccccccccccccccchhHHHHHHHHHHHHHHHhcCCCC
Q 043238 265 LSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALIKNAYQRNPNL 319 (426)
Q Consensus 265 ~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~rda~i~~~y~~~~~~ 319 (426)
+++++++|.++|. ||+|||+|++|+|+|.|+.
T Consensus 431 ~~s~~~~~~~anl-----------------------iqaqRd~FGaH~~~r~d~~ 462 (470)
T PTZ00142 431 YQMYRSQNLPANL-----------------------VQAQRDYFGAHTYKRLDRP 462 (470)
T ss_pred HHHhhcCCccHHH-----------------------HHHHHHHhCCCCcccCCCC
Confidence 9999999999876 8999999999999999875
No 24
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.90 E-value=7.9e-24 Score=220.70 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHH
Q 043238 121 SFEAYNNIRDILQRVAAHVDDGPCITYIGEGGS------GNFVKMVHNGIEYGDMQLISQAYDVLKH-----VGGVSNAE 189 (426)
Q Consensus 121 ~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Ga------g~~vKmv~N~i~~~~m~~iAEa~~Ll~~-----~g~ld~~~ 189 (426)
..++++++.+.++....+. ...+.||.+. +|++|++||++++++|++|+|||+|+++ .|++|+.+
T Consensus 277 ~~av~~R~~S~~k~~r~~~----~~~~~gp~~~~~~~~~~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ 352 (467)
T TIGR00873 277 TESVFARYLSSLKEERVAA----SKVLSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGE 352 (467)
T ss_pred HHHHHHHhccccHHHHHHh----hcccCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 5688889988887766432 2234566543 8999999999999999999999999997 59999999
Q ss_pred HHHHHHHhcccchh-hHHHHHhHHhhhccCCCCCCcchhhHHHhhc-ccchH-HHHHHHHHHcCCChhHHHHHHHHHHHh
Q 043238 190 LAEIFDEWNKGELE-SFLVQITADIFKVKDEYGEGELVDKILDKTG-MKGTR-KWTIQQAAELLVAALTIAASLDCRYLS 266 (426)
Q Consensus 190 ia~if~~W~~G~i~-S~L~ei~~~il~~~~~~~~~~lld~i~kd~~-qkgtg-~w~v~~A~~~gvp~P~isaAl~~r~~s 266 (426)
+++| |++|||+ |+|++-..++|.++++ ..+++++..+.... ..+.+ +|++..|.+.|+|+|++++|+. |++
T Consensus 353 ia~i---Wr~GcIIrs~lL~~i~~a~~~~~~-l~~l~~~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~--y~~ 426 (467)
T TIGR00873 353 IALI---WRGGCIIRSGFLDKITKAFAENPD-LANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALS--FYD 426 (467)
T ss_pred HHHH---hCCCceeeHhHHHHHHHHHHcCCC-hhhhcCCHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHH
Confidence 9999 9999998 7776666699986554 56777887777554 45556 6799999999999999999999 999
Q ss_pred hhhhhhhHHHHhhhhccccccccccccccchhHHHHHHHHHHHHHHHhcCCCC
Q 043238 267 GLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALIKNAYQRNPNL 319 (426)
Q Consensus 267 ~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~rda~i~~~y~~~~~~ 319 (426)
+++++|.++|. ||+|||+|++|+|+|.|+.
T Consensus 427 ~~~s~~~~~nl-----------------------iqaqRd~FGaH~~~r~d~~ 456 (467)
T TIGR00873 427 GYRTARLPANL-----------------------LQAQRDYFGAHTYERTDKP 456 (467)
T ss_pred HhhcCcccHHH-----------------------HHHHHHHhccccccccCCC
Confidence 99999998876 8999999999999999875
No 25
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.2e-23 Score=207.94 Aligned_cols=148 Identities=20% Similarity=0.306 Sum_probs=136.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhcccchh--hHHHHHhHHhhhccCCCCC
Q 043238 150 EGGSGNFVKMVHNGIEYGDMQLISQAYDVLKH-----VGGVSNAELAEIFDEWNKGELE--SFLVQITADIFKVKDEYGE 222 (426)
Q Consensus 150 ~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-----~g~ld~~~ia~if~~W~~G~i~--S~L~ei~~~il~~~~~~~~ 222 (426)
+.....+++.+.++++++.+.+|||+|.++++ +|++++.+|+.| |++|||+ .||.+|+ ++|.++++ ..
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~i---WR~GCIIRs~FL~~I~-~af~~~p~-l~ 386 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALI---WRGGCIIRSKFLDKIT-DAFDENPE-LA 386 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH---HhccceehHHHHHHHH-HHHhcCcc-hh
Confidence 45678899999999999999999999999997 899999999999 9999998 6888888 88886654 78
Q ss_pred CcchhhHHHhhcccchHHH--HHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhHH
Q 043238 223 GELVDKILDKTGMKGTRKW--TIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRL 300 (426)
Q Consensus 223 ~~lld~i~kd~~qkgtg~w--~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
++++++.|+++..+..+.| ++..|.+.|+|+|++++|+. |+++|+.+|+++|+
T Consensus 387 nLl~~pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssals--y~Dsyr~~~lpaNL----------------------- 441 (473)
T COG0362 387 NLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALS--YYDSYRTARLPANL----------------------- 441 (473)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH--HHHHhhhccccHHH-----------------------
Confidence 8999999999999999999 99999999999999999999 99999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHhHH
Q 043238 301 IDDVRQALIKNAYQRNPNLASLVVDPEFAREMVQRQAAWR 340 (426)
Q Consensus 301 i~~~rda~i~~~y~~~~~~~nll~~~~f~~~~~~~~~~wr 340 (426)
||+|||||++|+|+|.|+.. +|| +.|.
T Consensus 442 iQAQRDyFGAHtyeR~D~~~------~fH-------t~W~ 468 (473)
T COG0362 442 IQAQRDYFGAHTYERTDKEG------FFH-------TNWT 468 (473)
T ss_pred HHHHHHhhcccceeecCCCC------ccc-------cCcc
Confidence 89999999999999999864 588 7774
No 26
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.88 E-value=1.9e-22 Score=195.92 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=115.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhcccchh-hHHHHHhHHhhhccCCCCCCc
Q 043238 151 GGSGNFVKMVHNGIEYGDMQLISQAYDVLKH-----VGGVSNAELAEIFDEWNKGELE-SFLVQITADIFKVKDEYGEGE 224 (426)
Q Consensus 151 ~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-----~g~ld~~~ia~if~~W~~G~i~-S~L~ei~~~il~~~~~~~~~~ 224 (426)
.....+++.++++++++.+.+|+|||.|+++ .|++|..++++| |++|||+ |.+++...++|.++++ ..++
T Consensus 136 ~~~~~~i~~l~~Aly~~~i~~yaQGf~ll~~as~~~~W~lnl~~ia~I---Wr~GCIIRs~lL~~i~~af~~~p~-l~nL 211 (291)
T PF00393_consen 136 EDKEEFIEDLRKALYAAKIISYAQGFALLRAASKEYGWDLNLSEIARI---WRGGCIIRSWLLDDIAEAFKENPD-LENL 211 (291)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHH---TSSSSTT-BTHHHHHHHHHHH-TT--STG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHH---HhccchHHHHHHHHHHHHHHhCCC-hhcc
Confidence 4567899999999999999999999999997 899999999999 9999998 5444444588987554 6789
Q ss_pred chhhHHHhhcccchHHH--HHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhHHHH
Q 043238 225 LVDKILDKTGMKGTRKW--TIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLID 302 (426)
Q Consensus 225 lld~i~kd~~qkgtg~w--~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (426)
++++.+.+..++..+.| ++..|++.|+|+|++++|+. |+++++++|+|+|. ||
T Consensus 212 ll~~~f~~~l~~~~~~lR~vV~~ai~~gipvPalsaaL~--Y~ds~~~~~lpanl-----------------------IQ 266 (291)
T PF00393_consen 212 LLDPYFAEELKDNQPSLRRVVSLAIEAGIPVPALSAALS--YFDSYRSERLPANL-----------------------IQ 266 (291)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHH--HHHHHTTSSHTHHH-----------------------HH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHhcccCCCcHHH-----------------------HH
Confidence 99988888888777766 99999999999999999999 99999999999876 89
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 043238 303 DVRQALIKNAYQRNPNLAS 321 (426)
Q Consensus 303 ~~rda~i~~~y~~~~~~~n 321 (426)
+|||+||+|+|+|.|+...
T Consensus 267 AqRDyFGaHtyeR~D~~g~ 285 (291)
T PF00393_consen 267 AQRDYFGAHTYERIDKEGS 285 (291)
T ss_dssp HHHHHHH---EEBSSSSSE
T ss_pred HHHHHhcCcceeecCCCCC
Confidence 9999999999999998653
No 27
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.4e-21 Score=188.83 Aligned_cols=138 Identities=17% Similarity=0.295 Sum_probs=128.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhcccchh--hHHHHHhHHhhhccCCCCCCcc
Q 043238 153 SGNFVKMVHNGIEYGDMQLISQAYDVLKH-----VGGVSNAELAEIFDEWNKGELE--SFLVQITADIFKVKDEYGEGEL 225 (426)
Q Consensus 153 ag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-----~g~ld~~~ia~if~~W~~G~i~--S~L~ei~~~il~~~~~~~~~~l 225 (426)
.-++++.+..+++++.|.+|+|+|.|+++ +|+++..+|+.+ |++|||+ -||.+|+ ++++++++ ..+++
T Consensus 320 k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlm---WrgGCIIRsvfL~~I~-~a~~~~p~-l~nll 394 (487)
T KOG2653|consen 320 KKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALM---WRGGCIIRSVFLDRIK-KAYQRNPD-LANLL 394 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH---HcCCeEeeHHHHHHHH-HHHhcCcc-Hhhhc
Confidence 56789999999999999999999999987 899999999999 9999998 4888887 88887665 67899
Q ss_pred hhhHHHhhcccchHHH--HHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhHHHHH
Q 043238 226 VDKILDKTGMKGTRKW--TIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDD 303 (426)
Q Consensus 226 ld~i~kd~~qkgtg~w--~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 303 (426)
++..|.++..+....| ++..|.+.|+|+|++++++. |+++||.||+|||+ +|+
T Consensus 395 ~d~fF~~~v~~~q~~wr~vV~~a~~~gIptP~~st~La--fydgyr~e~lpaNl-----------------------lQA 449 (487)
T KOG2653|consen 395 LDPFFAKAVEEAQDSWRRVVALAVEAGIPTPAFSTALA--FYDGYRSERLPANL-----------------------LQA 449 (487)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH--HHhhhhhhcCcHHH-----------------------HHH
Confidence 9999999999999999 99999999999999999999 99999999999988 899
Q ss_pred HHHHHHHHHHhcCCCCC
Q 043238 304 VRQALIKNAYQRNPNLA 320 (426)
Q Consensus 304 ~rda~i~~~y~~~~~~~ 320 (426)
|||||++|+|++.+...
T Consensus 450 qRDYFGAHtye~l~~~~ 466 (487)
T KOG2653|consen 450 QRDYFGAHTYELLGEPG 466 (487)
T ss_pred HHHhhccceeeecCCCc
Confidence 99999999999988754
No 28
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.85 E-value=3e-20 Score=191.88 Aligned_cols=228 Identities=13% Similarity=0.074 Sum_probs=171.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcccc---CC---------CCcccccCCCC-----CC-c
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRE---DR---------PLHSQGLRPLH-----PT-P 68 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~---~~---------~~~~~~~~~~~-----~~-v 68 (426)
|+|||||+|.||.+||.+|+++||+|++||+++++++.+.+..... ++ ..++..+.+++ .+ +
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 4799999999999999999999999999999999998876421000 00 00123333322 23 3
Q ss_pred E--ecCCc---------hHHHHHh----hcCCC-------ccccchhhh------hh------ccccCCCCChhhhhcCC
Q 043238 69 Q--IHHHR---------PLGETSG----TSTPS-------AVSMKPVRR------VC------FISAWGSPGARKARHGP 114 (426)
Q Consensus 69 I--v~~g~---------~vd~vl~----~l~p~-------s~~~~t~rr------~~------~v~~pVsGg~~gA~~G~ 114 (426)
| ||+.. .+.++++ .+.++ |+.|.|.++ -. ++|+||+++|+.++.|.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~ 160 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGN 160 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCC
Confidence 3 66553 2555444 34554 777887765 11 67899999998888887
Q ss_pred ---------eEeecCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 043238 115 ---------SLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGV 185 (426)
Q Consensus 115 ---------slm~GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~l 185 (426)
.+|.|+++++.++++++|+.++. ..++++|+.++|..+|+++|.+.+..+..++|+..|+++.| +
T Consensus 161 ~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~G-i 234 (411)
T TIGR03026 161 AVHDLLNPDRIVGGETEEAGEAVAELYAPIIE-----DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALG-I 234 (411)
T ss_pred hhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcc-----CCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 58999999999999999999971 15789999999999999999999999999999999999987 9
Q ss_pred CHHHHHHHHHHhcccchhhHHHHHhHHhhhccCCCCCCc--chhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 186 SNAELAEIFDEWNKGELESFLVQITADIFKVKDEYGEGE--LVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 186 d~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~~~~~~--lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
|.+++.++ .+.+. .+.. ..+.+++ -..-+.||.. +.+..|.+.|+++|++.++..
T Consensus 235 D~~~v~~~---~~~~~----------~i~~--~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~~~~~~ 291 (411)
T TIGR03026 235 DVYEVIEA---AGTDP----------RIGF--NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELIEAARE 291 (411)
T ss_pred CHHHHHHH---hCCCC----------CCCC--CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHHHHHHH
Confidence 99999888 34331 1111 1233443 4455778887 788999999999999988876
No 29
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.82 E-value=3e-20 Score=194.31 Aligned_cols=147 Identities=16% Similarity=0.274 Sum_probs=127.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHhcccchh-hHHHHHhHHhhhccCCCCCCcch
Q 043238 153 SGNFVKMVHNGIEYGDMQLISQAYDVLKH-----VGGVSNAELAEIFDEWNKGELE-SFLVQITADIFKVKDEYGEGELV 226 (426)
Q Consensus 153 ag~~vKmv~N~i~~~~m~~iAEa~~Ll~~-----~g~ld~~~ia~if~~W~~G~i~-S~L~ei~~~il~~~~~~~~~~ll 226 (426)
...+++.++++++++.+++|+|||.|+++ .|++|+.++++| |++|||+ |+|++...++|.++++ ..++++
T Consensus 326 ~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~i---Wr~GcIIrs~lL~~i~~a~~~~~~-l~~l~~ 401 (493)
T PLN02350 326 KKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARI---WKGGCIIRAVFLDRIKKAYDRNPD-LASLLV 401 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH---hCCCceeeHhHHHHHHHHHHcCCC-hhhhcC
Confidence 35889999999999999999999999993 899999999999 9999998 7777777799987554 567778
Q ss_pred hhHHHhhcccc--hHHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccccccccccchhHHHHHH
Q 043238 227 DKILDKTGMKG--TRKWTIQQAAELLVAALTIAASLDCRYLSGLKEERQEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDV 304 (426)
Q Consensus 227 d~i~kd~~qkg--tg~w~v~~A~~~gvp~P~isaAl~~r~~s~~k~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 304 (426)
+..+....++. .++|++..|.+.|+|+|++++|+. |+++++++|.+++. ||+|
T Consensus 402 ~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~--y~~s~~~~~~~~nl-----------------------iqaq 456 (493)
T PLN02350 402 DPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLA--YFDTYRRARLPANL-----------------------VQAQ 456 (493)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHH--HHHhhccCCccHHH-----------------------HHHH
Confidence 77777665544 455699999999999999999999 99999999998875 8999
Q ss_pred HHHHHHHHHhcCCCCCCCCCchhHHHHHHHhhHhHHH
Q 043238 305 RQALIKNAYQRNPNLASLVVDPEFAREMVQRQAAWRR 341 (426)
Q Consensus 305 rda~i~~~y~~~~~~~nll~~~~f~~~~~~~~~~wr~ 341 (426)
||+|++|+|+|.|+.. .|| ..|.+
T Consensus 457 Rd~FGaH~~~r~d~~g------~~h-------~~w~~ 480 (493)
T PLN02350 457 RDYFGAHTYERVDRPG------SFH-------TEWTK 480 (493)
T ss_pred HHHhCCCceeeCCCCC------CCc-------CCchh
Confidence 9999999999998753 388 88864
No 30
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.80 E-value=1.7e-19 Score=180.70 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=168.8
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcccc----C--CCCcccccCCCC-----CC-c
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRE----D--RPLHSQGLRPLH-----PT-P 68 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~----~--~~~~~~~~~~~~-----~~-v 68 (426)
|.+. |+|+|||+|.||++||.+|+++|++|++|+|++++++.+.+.+... + ++.++..+.+++ .+ +
T Consensus 1 ~~~~--m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~V 78 (328)
T PRK14618 1 MHHG--MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFA 78 (328)
T ss_pred CCCC--CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEE
Confidence 6664 4899999999999999999999999999999999988887643111 0 011133333432 33 3
Q ss_pred E--ecCCchHHHHHhhcCCC-------c-cccch--hhh-hhcc------ccCCCCChhhhhc-----CC-eEeecCCHH
Q 043238 69 Q--IHHHRPLGETSGTSTPS-------A-VSMKP--VRR-VCFI------SAWGSPGARKARH-----GP-SLMPGGSFE 123 (426)
Q Consensus 69 I--v~~g~~vd~vl~~l~p~-------s-~~~~t--~rr-~~~v------~~pVsGg~~gA~~-----G~-slm~GG~~~ 123 (426)
| ||+. .++++++.+.|. + +.+++ .++ ..++ .+.+.+||..|.. +. .+|.||+++
T Consensus 79 i~~v~~~-~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~ 157 (328)
T PRK14618 79 VVAVPSK-ALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPG 157 (328)
T ss_pred EEECchH-HHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHH
Confidence 3 6665 578999888776 2 33332 222 1111 2234455544444 55 889999999
Q ss_pred HHHHHHHHHHHhhcccCC--CCcEEEeCC---------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 043238 124 AYNNIRDILQRVAAHVDD--GPCITYIGE---------GGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAE 192 (426)
Q Consensus 124 a~~~v~~iL~~iaa~~~~--~~~v~~vG~---------~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~ 192 (426)
.+++++++|+..+.++.- .-.-.++|. .|+++.+|+.+|......+++++|++.++++.| ++++.+.+
T Consensus 158 ~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~~~~~~~~ 236 (328)
T PRK14618 158 LARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG-AEEATFYG 236 (328)
T ss_pred HHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-CCccchhc
Confidence 999999999988843200 000003453 588999999999999999999999999999997 99999988
Q ss_pred HHHHhcccch----hhHHHHHhH--Hhhhcc---CCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 193 IFDEWNKGEL----ESFLVQITA--DIFKVK---DEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 193 if~~W~~G~i----~S~L~ei~~--~il~~~---~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+ ...|.+ .|...+.+. ..+.+. +++.+++.+....||+. .+.+.|.++++++|++..+..
T Consensus 237 ~---~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~~~~ 305 (328)
T PRK14618 237 L---SGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEAVAR 305 (328)
T ss_pred C---cchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHHHHH
Confidence 7 333322 244444331 223322 12344567777778887 899999999999999877765
No 31
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.76 E-value=9.9e-18 Score=173.24 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=134.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcccc---CCC---------CcccccCCCC--CCcE--
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRE---DRP---------LHSQGLRPLH--PTPQ-- 69 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~---~~~---------~~~~~~~~~~--~~vI-- 69 (426)
+++|+|||+|.||.+||.+|+++||+|++||+++++++.+....... +++ ..+....+.+ +.+|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 46899999999999999999999999999999999998754211100 000 0111122222 3333
Q ss_pred ecCC---------chHHHHHh----hcCCC-------ccccchhhh---------hh--------------ccccC--CC
Q 043238 70 IHHH---------RPLGETSG----TSTPS-------AVSMKPVRR---------VC--------------FISAW--GS 104 (426)
Q Consensus 70 v~~g---------~~vd~vl~----~l~p~-------s~~~~t~rr---------~~--------------~v~~p--Vs 104 (426)
||+. ..+.++++ .++++ |+.|.|.++ .. ++.+| +.
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~ 162 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVL 162 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccC
Confidence 7765 45555443 45555 678877765 11 13344 44
Q ss_pred CChhhhhcCC-eEeecC-CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043238 105 PGARKARHGP-SLMPGG-SFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHV 182 (426)
Q Consensus 105 Gg~~gA~~G~-slm~GG-~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~ 182 (426)
+|...+..+. ..|+|| +++++++++++++.++ +.+.++|+.++|..+|+++|.+.+..+..+.|...++++.
T Consensus 163 ~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~------~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~ 236 (415)
T PRK11064 163 PGQVMVELIKNDRVIGGMTPVCSARASELYKIFL------EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQ 236 (415)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhc------CCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544444444 578999 9999999999999999 5678999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHH
Q 043238 183 GGVSNAELAEIF 194 (426)
Q Consensus 183 g~ld~~~ia~if 194 (426)
| +|..++.+..
T Consensus 237 G-iD~~~v~~~~ 247 (415)
T PRK11064 237 G-INVWELIRLA 247 (415)
T ss_pred C-CCHHHHHHHh
Confidence 7 9999998884
No 32
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.74 E-value=1.6e-17 Score=165.58 Aligned_cols=237 Identities=12% Similarity=0.104 Sum_probs=153.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCC------CCcccccCCCC-----CCc-E--ecC
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDR------PLHSQGLRPLH-----PTP-Q--IHH 72 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~------~~~~~~~~~~~-----~~v-I--v~~ 72 (426)
|+|+|||+|.||+.||.+|+++|++|++|+|++++++.+.+.+..... +.++..+.+++ +++ | +|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 589999999999999999999999999999999999888775321100 00122233332 333 3 665
Q ss_pred CchHHHHHhhcCC----C--------ccccchhhh--------------hhccccCCCCChhhhhcCC-eEeecCCHHHH
Q 043238 73 HRPLGETSGTSTP----S--------AVSMKPVRR--------------VCFISAWGSPGARKARHGP-SLMPGGSFEAY 125 (426)
Q Consensus 73 g~~vd~vl~~l~p----~--------s~~~~t~rr--------------~~~v~~pVsGg~~gA~~G~-slm~GG~~~a~ 125 (426)
..++++++.+.+ . ++.+++.++ ..++.+|.++.+.++..+. .++.|++.+.+
T Consensus 82 -~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~ 160 (325)
T PRK00094 82 -QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELA 160 (325)
T ss_pred -HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHH
Confidence 567777765543 2 333433322 1133444444333444445 67788899999
Q ss_pred HHHHHHHHHhhcccCCCCcEEEe----C-------------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 043238 126 NNIRDILQRVAAHVDDGPCITYI----G-------------EGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNA 188 (426)
Q Consensus 126 ~~v~~iL~~iaa~~~~~~~v~~v----G-------------~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~ 188 (426)
++++++|+..+.+ +.+. | ..|.+..+|+.+|.+....+.+++|++.++++.| +|++
T Consensus 161 ~~~~~~l~~~~~~------~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~d~~ 233 (325)
T PRK00094 161 ERVQELFHSPYFR------VYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG-ANPE 233 (325)
T ss_pred HHHHHHhCCCCEE------EEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CChh
Confidence 9999999987732 3222 2 1378888999999999999999999999999998 9999
Q ss_pred HHHHHHHHhcccchh----hHHHHHhH--HhhhccCCC-----CCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHH
Q 043238 189 ELAEIFDEWNKGELE----SFLVQITA--DIFKVKDEY-----GEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIA 257 (426)
Q Consensus 189 ~ia~if~~W~~G~i~----S~L~ei~~--~il~~~~~~-----~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~is 257 (426)
.+.++. ..|... |...+... ..+.....+ ..+ .+....||+. .++..|.++|+|+|+..
T Consensus 234 ~~~~~~---~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~P~~~ 303 (325)
T PRK00094 234 TFLGLA---GLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEMPITE 303 (325)
T ss_pred hhhccc---HhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCCCHHH
Confidence 987762 222111 11111111 112111100 001 2334456665 78999999999999987
Q ss_pred HHHH
Q 043238 258 ASLD 261 (426)
Q Consensus 258 aAl~ 261 (426)
.+..
T Consensus 304 ~~~~ 307 (325)
T PRK00094 304 AVYA 307 (325)
T ss_pred HHHH
Confidence 7665
No 33
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.71 E-value=4.2e-17 Score=162.25 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=145.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHhhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGTS 83 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~l 83 (426)
.|+|||||+|.||++||.+|+++||+|.+|||+++.. +.+ ...+. +.+| +|+ .+++++++.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~~--~~~------------~~~~a-dvvi~~vp~-~~~~~v~~~l 67 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGLS--LAA------------VLADA-DVIVSAVSM-KGVRPVAEQV 67 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCCC--HHH------------HHhcC-CEEEEECCh-HHHHHHHHHH
Confidence 4689999999999999999999999999999987521 111 11111 3344 666 5788887665
Q ss_pred CC-----C------c--cccchhhh------hhccccCCC--CChhhhhc-----CC-eEeecCCHHHHHHHHHHHHHhh
Q 043238 84 TP-----S------A--VSMKPVRR------VCFISAWGS--PGARKARH-----GP-SLMPGGSFEAYNNIRDILQRVA 136 (426)
Q Consensus 84 ~p-----~------s--~~~~t~rr------~~~v~~pVs--Gg~~gA~~-----G~-slm~GG~~~a~~~v~~iL~~ia 136 (426)
.+ . + +.|++.+. .+|.+.||+ +|+..|.. +. .+|.||+++++++++++|+..+
T Consensus 68 ~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~ 147 (308)
T PRK14619 68 QALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSER 147 (308)
T ss_pred HHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCc
Confidence 43 2 1 34444332 467789985 55543322 33 7889999999999999999887
Q ss_pred cccCCCCcEEEeCC-----------------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcc
Q 043238 137 AHVDDGPCITYIGE-----------------GGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNK 199 (426)
Q Consensus 137 a~~~~~~~v~~vG~-----------------~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~ 199 (426)
. ++.+.++ .|.+..+|+.+|.+....+++++|++.++++.| ++++.+.++ .
T Consensus 148 ~------~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~~t~~~~----~- 215 (308)
T PRK14619 148 F------RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQTETFYGL----S- 215 (308)
T ss_pred E------EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCccccccc----c-
Confidence 3 4553333 233455569999999999999999999999987 898887664 1
Q ss_pred cchhhHHHHHhHHhhhccCCCCCCc------chhhHHHhhccc----chHHHHHHHHHHcCCChhHHHHHHH
Q 043238 200 GELESFLVQITADIFKVKDEYGEGE------LVDKILDKTGMK----GTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 200 G~i~S~L~ei~~~il~~~~~~~~~~------lld~i~kd~~qk----gtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
|...+++.. .... ..++..++ .++.+.+...+. -+-+.+.+.+.+.|+++|++.++..
T Consensus 216 g~gd~~~t~---~~~~-~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~ 283 (308)
T PRK14619 216 GLGDLLATC---TSPL-SRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYR 283 (308)
T ss_pred chhhhheee---cCCC-CccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 222222211 1111 01111112 223333322221 1222689999999999999887765
No 34
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.71 E-value=4.2e-16 Score=155.09 Aligned_cols=227 Identities=10% Similarity=0.063 Sum_probs=152.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH-----------HhccccC-----CCCcccccCCCC----
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL-----------DRAHRED-----RPLHSQGLRPLH---- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~-----------~~~~~~~-----~~~~~~~~~~~~---- 65 (426)
+++|+|||+|.||.+||.+|+++|++|++|||++++.+... +.+.... ...++..+.+++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 35899999999999999999999999999999998776533 2221000 001123333332
Q ss_pred -CC-cE--ecCCchHH-HHHhhc---CCC------ccccchhhh---------hhccccCCCCChhhhhcCCeEeec---
Q 043238 66 -PT-PQ--IHHHRPLG-ETSGTS---TPS------AVSMKPVRR---------VCFISAWGSPGARKARHGPSLMPG--- 119 (426)
Q Consensus 66 -~~-vI--v~~g~~vd-~vl~~l---~p~------s~~~~t~rr---------~~~v~~pVsGg~~gA~~G~slm~G--- 119 (426)
.+ +| +|....+. .++..+ .+. +.......+ ..++++|+++.... ....|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lveiv~~~~ 158 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI---PVVEVVPAPW 158 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC---ceEEEeCCCC
Confidence 33 34 66654433 333332 222 111111111 46778999863211 1255665
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcc
Q 043238 120 GSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNK 199 (426)
Q Consensus 120 G~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~ 199 (426)
|+++++++++++++.++ +.++++|+.+.|+ ++|| + .+..++|++.|+++++ +|++++-++ ++.
T Consensus 159 t~~~~~~~~~~~~~~lG------~~~v~v~~~~~G~---i~nr-l---~~a~~~EA~~l~~~g~-~~~~~id~~---~~~ 221 (308)
T PRK06129 159 TAPATLARAEALYRAAG------QSPVRLRREIDGF---VLNR-L---QGALLREAFRLVADGV-ASVDDIDAV---IRD 221 (308)
T ss_pred CCHHHHHHHHHHHHHcC------CEEEEecCCCccH---HHHH-H---HHHHHHHHHHHHHcCC-CCHHHHHHH---HHh
Confidence 99999999999999999 7899999988886 4444 3 4478899999999887 999999998 677
Q ss_pred cchhhHHHHHhHHhhhccCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 200 GELESFLVQITADIFKVKDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 200 G~i~S~L~ei~~~il~~~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
|...++.. .++.... |.+.+.++.....++.. +....+.+.+.|.|.+..-+.
T Consensus 222 ~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 222 GLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHHH
Confidence 76666544 2343332 34556677777777776 677788889999998875544
No 35
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.65 E-value=2e-15 Score=156.38 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=155.6
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCC---------CcccccCCCC-----C
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRP---------LHSQGLRPLH-----P 66 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~-----~ 66 (426)
|-....|+|||||||.||.+||.+|++ ||+|.+||+++++++.+. .|...-.+ ..+....+.+ +
T Consensus 1 ~~~~~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~ad 78 (425)
T PRK15182 1 MFGIDEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECN 78 (425)
T ss_pred CCCCCCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCC
Confidence 334455799999999999999999887 699999999999999987 43321000 0011111111 3
Q ss_pred CcE--ecCC---------chHH----HHHhhcCCC-------ccccchhhh-----------hhccc--------cCCCC
Q 043238 67 TPQ--IHHH---------RPLG----ETSGTSTPS-------AVSMKPVRR-----------VCFIS--------AWGSP 105 (426)
Q Consensus 67 ~vI--v~~g---------~~vd----~vl~~l~p~-------s~~~~t~rr-----------~~~v~--------~pVsG 105 (426)
.+| ||+. +.|. .+.+.+.++ |+.|.|.++ ..+.+ .++.+
T Consensus 79 vvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~ 158 (425)
T PRK15182 79 FYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINP 158 (425)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCC
Confidence 333 6654 2333 233455555 888888774 23444 45677
Q ss_pred ChhhhhcCC--eEeecCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043238 106 GARKARHGP--SLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVG 183 (426)
Q Consensus 106 g~~gA~~G~--slm~GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g 183 (426)
|...+..+. -++.|++++..+.++++++.+.- ..+.++++.++|..+|+++|.+.+..++.+.|...++++.|
T Consensus 159 G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~G 233 (425)
T PRK15182 159 GDKKHRLTNIKKITSGSTAQIAELIDEVYQQIIS-----AGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLN 233 (425)
T ss_pred CcccccccCCCeEEECCCHHHHHHHHHHHHHHhh-----cCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 765554443 68888888889999999999872 13678999999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccCC-CCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 184 GVSNAELAEIFDEWNKGELESFLVQITADIFKVKDE-YGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 184 ~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~-~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
+|..++.+.. +... .|+ .+ .+. +.++.+ -+|.. ..+..|.+.|++.+++.++..
T Consensus 234 -iD~~~v~~a~---~~~~--~~~------~~--~pG~vGG~Cl----pkD~~------~L~~~a~~~g~~~~l~~~a~~ 288 (425)
T PRK15182 234 -IDTEAVLRAA---GSKW--NFL------PF--RPGLVGGHCI----GVDPY------YLTHKSQGIGYYPEIILAGRR 288 (425)
T ss_pred -cCHHHHHHHh---cCCC--Ccc------cC--CCCccccccc----cccHH------HHHHHHHhcCCCcHHHHHHHH
Confidence 9999998882 2210 111 01 111 222211 12221 356678888998888877765
No 36
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.61 E-value=7.5e-15 Score=150.45 Aligned_cols=181 Identities=12% Similarity=0.111 Sum_probs=129.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccc---cCC-------CCcccccCCC----C--CCcE-
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHR---EDR-------PLHSQGLRPL----H--PTPQ- 69 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~---~~~-------~~~~~~~~~~----~--~~vI- 69 (426)
|+|||||+|.||.+||..|+ .||+|++||+++++++.+.+.-.. ..+ ...+....++ + +.+|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 37999999999999997777 599999999999999988652100 000 0012221112 1 2333
Q ss_pred -ecCC----------chHHHHHhh---cCCC-------ccccchhhh-h-hccccCCCCChhhhhcCC---------eEe
Q 043238 70 -IHHH----------RPLGETSGT---STPS-------AVSMKPVRR-V-CFISAWGSPGARKARHGP---------SLM 117 (426)
Q Consensus 70 -v~~g----------~~vd~vl~~---l~p~-------s~~~~t~rr-~-~~v~~pVsGg~~gA~~G~---------slm 117 (426)
||.. .+++++++. +.++ |++|.|.++ . .+.+.++.=+|+.++.|. .+|
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a~~d~~~p~rvv 159 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIV 159 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCcccccccCCCEEE
Confidence 5543 455555433 4454 889998887 2 222333333566666665 588
Q ss_pred ecCCHHHHHHHHHHHHH--hhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 118 PGGSFEAYNNIRDILQR--VAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 118 ~GG~~~a~~~v~~iL~~--iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
.||+++..+++.++|.. ++. ....++++.++|.++|+++|++.+..+..+.|...++++.| +|..++.+.+
T Consensus 160 ~G~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G-iD~~eV~~a~ 232 (388)
T PRK15057 160 IGERSERAERFAALLQEGAIKQ-----NIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG-LNTRQIIEGV 232 (388)
T ss_pred EEcCcHHHHHHHHHHHhhhhcC-----CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHh
Confidence 99999999999999854 441 22347899999999999999999999999999999999987 9999999883
No 37
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.55 E-value=2.7e-13 Score=131.77 Aligned_cols=167 Identities=13% Similarity=0.186 Sum_probs=114.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC----eEEEE-eCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF----QISVY-NRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGET 79 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~----~V~vy-nr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~v 79 (426)
|+|||||+|.||.+|+++|+++|+ +|++| ||++++.+.+.+.+.... .+....+... +.+| ++ .+.++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~-~~~~e~~~~a-DvVil~v~-~~~~~~v 77 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA-ASNTEVVKSS-DVIILAVK-PQVVKDV 77 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe-CChHHHHhcC-CEEEEEEC-cHHHHHH
Confidence 579999999999999999999998 99999 999999888876543211 0011111111 3344 75 5668888
Q ss_pred HhhcCC----C--------ccccchhhh----hhccc-cCCCCChhhhhcCC-eEeecCCHHHHHHHHHHHHHhhcccCC
Q 043238 80 SGTSTP----S--------AVSMKPVRR----VCFIS-AWGSPGARKARHGP-SLMPGGSFEAYNNIRDILQRVAAHVDD 141 (426)
Q Consensus 80 l~~l~p----~--------s~~~~t~rr----~~~v~-~pVsGg~~gA~~G~-slm~GG~~~a~~~v~~iL~~iaa~~~~ 141 (426)
+..+.+ . +...++.++ .+++. +|..+...+..... +...+++++.++.++++|+.++
T Consensus 78 l~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G----- 152 (266)
T PLN02688 78 LTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVG----- 152 (266)
T ss_pred HHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCC-----
Confidence 866543 2 112222222 24664 77776655544333 3445568999999999999999
Q ss_pred CCcEEEe---------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 142 GPCITYI---------GEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 142 ~~~v~~v---------G~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
. +.++ |..|+|.. +.+..+++++|+ +.+.| +|.++..++.
T Consensus 153 -~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~ 201 (266)
T PLN02688 153 -K-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLA 201 (266)
T ss_pred -C-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHH
Confidence 6 7787 44677754 467888899998 55565 9999999984
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.54 E-value=4.4e-14 Score=149.28 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=123.1
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc-------c---ccCC--CCcccccCCCC-----CC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA-------H---REDR--PLHSQGLRPLH-----PT 67 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~-------~---~~~~--~~~~~~~~~~~-----~~ 67 (426)
|.++|||||+|.||++||.+|+++|++|++||+++++.+.+.+.. . .... ..++..+.+++ .+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 456899999999999999999999999999999999887653210 0 0000 00133444443 33
Q ss_pred -cE--ecCCchHHH-HHhhc----CCC------ccccchh-------hh-hhccccCCCCChhhhhcCC-eEeecCC---
Q 043238 68 -PQ--IHHHRPLGE-TSGTS----TPS------AVSMKPV-------RR-VCFISAWGSPGARKARHGP-SLMPGGS--- 121 (426)
Q Consensus 68 -vI--v~~g~~vd~-vl~~l----~p~------s~~~~t~-------rr-~~~v~~pVsGg~~gA~~G~-slm~GG~--- 121 (426)
+| +|....+.. ++.++ .|. |...... ++ ..++++|++. ...+| ..|++|+
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP----~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNP----VYLLPLVELVGGGKTS 158 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCC----cccCceEEEcCCCCCC
Confidence 44 777765554 33322 333 2111111 11 5677888762 23457 7888887
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHhccc
Q 043238 122 FEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLI-SQAYDVLKHVGGVSNAELAEIFDEWNKG 200 (426)
Q Consensus 122 ~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~i-AEa~~Ll~~~g~ld~~~ia~if~~W~~G 200 (426)
++++++++++|+.++ +..+++| |.++|.+....+.++ +|++.|+++++ ++++++-++ ++.|
T Consensus 159 ~e~~~~~~~~~~~lG------~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~---~~~g 220 (495)
T PRK07531 159 PETIRRAKEILREIG------MKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV---IRYS 220 (495)
T ss_pred HHHHHHHHHHHHHcC------CEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH---Hhhc
Confidence 799999999999999 7888888 577777777778885 99999999987 999999999 5555
Q ss_pred chh
Q 043238 201 ELE 203 (426)
Q Consensus 201 ~i~ 203 (426)
...
T Consensus 221 ~g~ 223 (495)
T PRK07531 221 FGL 223 (495)
T ss_pred cCC
Confidence 433
No 39
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.52 E-value=1.2e-13 Score=138.99 Aligned_cols=242 Identities=14% Similarity=0.075 Sum_probs=144.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCC---------CCcccccCCCC----CC-cE-
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDR---------PLHSQGLRPLH----PT-PQ- 69 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~----~~-vI- 69 (426)
|||+|+|||+|.||+.+|..|+++|++|++|+|++. .+.+.+.+..... ..++....+.+ .+ +|
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 79 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLV 79 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEE
Confidence 567999999999999999999999999999999753 4555554422100 00111122222 33 33
Q ss_pred -ecCCchHHHHHhhcCCC----------ccccchhhh-------hhcccc--C---CCCChhhhh---cCCeEeecCCHH
Q 043238 70 -IHHHRPLGETSGTSTPS----------AVSMKPVRR-------VCFISA--W---GSPGARKAR---HGPSLMPGGSFE 123 (426)
Q Consensus 70 -v~~g~~vd~vl~~l~p~----------s~~~~t~rr-------~~~v~~--p---VsGg~~gA~---~G~slm~GG~~~ 123 (426)
+++.. ++++++.+.+. +........ .+++++ + +++|+..+. .|+ +..+ +.+
T Consensus 80 ~vk~~~-~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~-l~~~-~~~ 156 (341)
T PRK08229 80 TVKSAA-TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA-LAIE-ASP 156 (341)
T ss_pred EecCcc-hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc-eEec-CCc
Confidence 66544 56666655432 111111111 234443 2 344443333 344 2222 345
Q ss_pred HHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhC
Q 043238 124 AYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGD--------------------MQLISQAYDVLKHVG 183 (426)
Q Consensus 124 a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~--------------------m~~iAEa~~Ll~~~g 183 (426)
.++++.++|+..+ ..+.+.++.+.+...|++.|.+.... +.++.|++.++++.|
T Consensus 157 ~~~~~~~~l~~~g------~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~G 230 (341)
T PRK08229 157 ALRPFAAAFARAG------LPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAG 230 (341)
T ss_pred hHHHHHHHHHhcC------CCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcC
Confidence 6788999999877 67889999999999999999743333 378999999999987
Q ss_pred CCCHHHHHHHHHHhcccc--hhhHHHHHhHHhhhccCCCCCCcchhhHHHhhcccchH------HHHHHHHHHcCCChhH
Q 043238 184 GVSNAELAEIFDEWNKGE--LESFLVQITADIFKVKDEYGEGELVDKILDKTGMKGTR------KWTIQQAAELLVAALT 255 (426)
Q Consensus 184 ~ld~~~ia~if~~W~~G~--i~S~L~ei~~~il~~~~~~~~~~lld~i~kd~~qkgtg------~w~v~~A~~~gvp~P~ 255 (426)
++++.+.++...+-.-. +.+.+.+.....+.+.+ +.. ...+++|...+... .+++..|.++|+|+|.
T Consensus 231 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~ 305 (341)
T PRK08229 231 -IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPV 305 (341)
T ss_pred -CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-Ccc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcH
Confidence 88766544322221111 12444443322222212 111 23455555532211 1699999999999999
Q ss_pred HHHHHH
Q 043238 256 IAASLD 261 (426)
Q Consensus 256 isaAl~ 261 (426)
......
T Consensus 306 ~~~~~~ 311 (341)
T PRK08229 306 NARLCA 311 (341)
T ss_pred HHHHHH
Confidence 887765
No 40
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=3.2e-13 Score=132.50 Aligned_cols=169 Identities=13% Similarity=0.119 Sum_probs=110.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCC----CeEEEEeCCcc-chHHHHHh-ccccCCCCcccccCCCCCCcE--ecCCchHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKG----FQISVYNRTTS-KVDETLDR-AHREDRPLHSQGLRPLHPTPQ--IHHHRPLGE 78 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G----~~V~vynr~~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~ 78 (426)
|+|||||+|.||.+|+.+|+++| ++|.+|||+++ +.+.+.+. +.... .++....... +.+| |++.. +.+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~~~~e~~~~a-DvVilav~p~~-~~~ 80 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGT-HNKKELLTDA-NILFLAMKPKD-VAE 80 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-CCHHHHHhcC-CEEEEEeCHHH-HHH
Confidence 48999999999999999999998 89999999874 56776654 32110 0111111111 3344 77765 455
Q ss_pred HHhhcCC----C--------ccccchhhhhhccccCCCCCh---hhhhcCC-eEeecCC---HHHHHHHHHHHHHhhccc
Q 043238 79 TSGTSTP----S--------AVSMKPVRRVCFISAWGSPGA---RKARHGP-SLMPGGS---FEAYNNIRDILQRVAAHV 139 (426)
Q Consensus 79 vl~~l~p----~--------s~~~~t~rr~~~v~~pVsGg~---~gA~~G~-slm~GG~---~~a~~~v~~iL~~iaa~~ 139 (426)
+++.+.+ . ++.+++.++..=-++||+++. ..+..+. ++|.+|+ ++.++.++++|+.+|
T Consensus 81 vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G--- 157 (279)
T PRK07679 81 ALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIG--- 157 (279)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCC---
Confidence 5555542 2 334444443111146888873 3556555 8888877 678999999999999
Q ss_pred CCCCcEE------E--eCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 043238 140 DDGPCIT------Y--IGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFD 195 (426)
Q Consensus 140 ~~~~~v~------~--vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~ 195 (426)
.++. + +|..|+|.. +.+..+.+++|+ +.+.| +|.++..+++.
T Consensus 158 ---~~~~v~e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~G-l~~~~a~~~~~ 207 (279)
T PRK07679 158 ---LVSVVEEEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIG-LKEDVAKSLIL 207 (279)
T ss_pred ---cEEEeCHHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 5554 5 677777754 345555555555 55665 99999999853
No 41
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.50 E-value=2.6e-13 Score=136.75 Aligned_cols=174 Identities=10% Similarity=0.057 Sum_probs=121.5
Q ss_pred CcEEEEchhHH--------------------HHHHHHHHHhCCCeEEEEeCCcc-----chHHHHHhccccCCCCccccc
Q 043238 7 SRIGLAGLAVM--------------------GQKLALNVPEKGFQISVYNRTTS-----KVDETLDRAHREDRPLHSQGL 61 (426)
Q Consensus 7 ~~IG~IGlG~M--------------------G~~lA~nL~~~G~~V~vynr~~~-----~~~~l~~~~~~~~~~~~~~~~ 61 (426)
|||.|+|.|+- |.+||.+|+++||+|++|||+++ +.+.+.+.+.... .+....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~a-sd~~eaa 79 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVV-SDDAEAA 79 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEe-CCHHHHH
Confidence 47888888864 89999999999999999999997 3444544443211 0011111
Q ss_pred CCCCCCcE--ecCCchHHHHHhhcC----CC-------ccccchh-hh-------------hhcc-ccCCCCChhhhhcC
Q 043238 62 RPLHPTPQ--IHHHRPLGETSGTST----PS-------AVSMKPV-RR-------------VCFI-SAWGSPGARKARHG 113 (426)
Q Consensus 62 ~~~~~~vI--v~~g~~vd~vl~~l~----p~-------s~~~~t~-rr-------------~~~v-~~pVsGg~~gA~~G 113 (426)
.+. +.+| +|.+..++++++.+. ++ |..+.+. +. +.++ .++|.|++.++
T Consensus 80 ~~A-DvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~--- 155 (342)
T PRK12557 80 KHG-EIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHG--- 155 (342)
T ss_pred hCC-CEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccch---
Confidence 111 3344 887766777776543 33 4444432 11 2233 34555554332
Q ss_pred CeEeecC--------CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 043238 114 PSLMPGG--------SFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGV 185 (426)
Q Consensus 114 ~slm~GG--------~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~l 185 (426)
..+|.|| +++++++++++|+.++ ..+++++ .|.++.+|+++|.+....+++++|++.++++.+ .
T Consensus 156 l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G------~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~-~ 227 (342)
T PRK12557 156 HYVIAGKTTNGTELATEEQIEKCVELAESIG------KEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKII-K 227 (342)
T ss_pred heEEeCCCcccccCCCHHHHHHHHHHHHHcC------CEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 2566665 9999999999999999 5676766 599999999999999999999999999999998 7
Q ss_pred CHHHHHHH
Q 043238 186 SNAELAEI 193 (426)
Q Consensus 186 d~~~ia~i 193 (426)
++.++++-
T Consensus 228 ~p~~~~~~ 235 (342)
T PRK12557 228 APKEMIEK 235 (342)
T ss_pred CHHHHHHH
Confidence 88877665
No 42
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.46 E-value=1.3e-12 Score=138.27 Aligned_cols=165 Identities=12% Similarity=0.180 Sum_probs=117.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHH-----------HHhccccC-----CCCcccccCCCC----
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDET-----------LDRAHRED-----RPLHSQGLRPLH---- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l-----------~~~~~~~~-----~~~~~~~~~~~~---- 65 (426)
.++|||||+|.||..||.+|+++|++|++||++++++++. .+.|.-.. .-..++.+.+++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLAD 86 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhCC
Confidence 3679999999999999999999999999999999988773 33331000 001234444443
Q ss_pred -CCcE--ecCCchHHHHH----hhc-CCC--------ccccchh-----h--h---hhccc-cCCCCChhhhhcCCeEee
Q 043238 66 -PTPQ--IHHHRPLGETS----GTS-TPS--------AVSMKPV-----R--R---VCFIS-AWGSPGARKARHGPSLMP 118 (426)
Q Consensus 66 -~~vI--v~~g~~vd~vl----~~l-~p~--------s~~~~t~-----r--r---~~~v~-~pVsGg~~gA~~G~slm~ 118 (426)
+.+| |+....++.++ +.+ .|. |+.+... + | +||++ +|++ .-..|+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~--------~LvEvv 158 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM--------KLVEVV 158 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC--------eeEEEe
Confidence 3345 88887776653 333 233 2222211 1 1 78998 8888 126677
Q ss_pred cC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 119 GG---SFEAYNNIRDILQRVAAHVDDGPCITYIGE-GGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 119 GG---~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~-~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
+| ++++++++.++++.++ +.++++|+ .| .+.|-+.. ..++|++.|+++++ .+++++-+++
T Consensus 159 ~g~~Ts~~~~~~~~~l~~~lg------k~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~~~iD~al 222 (507)
T PRK08268 159 SGLATDPAVADALYALARAWG------KTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADPATIDAIL 222 (507)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 65 9999999999999999 78899986 56 36666654 38899999999877 9999999984
No 43
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.41 E-value=3e-12 Score=135.30 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=118.8
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHH-----------HHhccccC-----CCCcccccCCCC---
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDET-----------LDRAHRED-----RPLHSQGLRPLH--- 65 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l-----------~~~~~~~~-----~~~~~~~~~~~~--- 65 (426)
..++|||||+|.||..||.+|+++||+|++|||+++++++. .+.|.... .-.+++.+.+++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 34689999999999999999999999999999999988653 33331100 001233344433
Q ss_pred --CCcE--ecCCchHHHHH----hhc-CCC--------ccccc-----hhh--h---hhccc-cCCCCChhhhhcCCeEe
Q 043238 66 --PTPQ--IHHHRPLGETS----GTS-TPS--------AVSMK-----PVR--R---VCFIS-AWGSPGARKARHGPSLM 117 (426)
Q Consensus 66 --~~vI--v~~g~~vd~vl----~~l-~p~--------s~~~~-----t~r--r---~~~v~-~pVsGg~~gA~~G~slm 117 (426)
+.+| |+....++..+ +.+ .|. |..+. +.+ | .||++ +|+++ -..|
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~--------LvEv 155 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMA--------LVEV 155 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCc--------eEEE
Confidence 3455 88877776553 222 232 22222 111 1 88999 88882 3788
Q ss_pred ecC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 118 PGG---SFEAYNNIRDILQRVAAHVDDGPCITYIGE-GGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 118 ~GG---~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~-~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
++| ++++++.+.++++.++ +.++++|+ +|. +.|-+. ...+.|++.|+++++ .++++|-++
T Consensus 156 v~g~~Ts~e~~~~~~~l~~~lg------k~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g~-a~~~~ID~a 219 (503)
T TIGR02279 156 VSGLATAAEVAEQLYETALAWG------KQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQV-AAPAVLDAA 219 (503)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC------CeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 999 9999999999999999 78889996 552 555554 368999999999877 999999999
Q ss_pred HH
Q 043238 194 FD 195 (426)
Q Consensus 194 f~ 195 (426)
+.
T Consensus 220 l~ 221 (503)
T TIGR02279 220 LR 221 (503)
T ss_pred HH
Confidence 53
No 44
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.41 E-value=8.3e-13 Score=129.65 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=107.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHhhc-
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGTS- 83 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~l- 83 (426)
|+|||||+|.||.+||..|.++|++|.+|||+++..+.+.+.+.............+. +.+| +|... +.++++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~a-DlVilavp~~~-~~~~~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDC-DLVILALPIGL-LLPPSEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCC-CEEEEcCCHHH-HHHHHHHHH
Confidence 3799999999999999999999999999999999988887765321100011111111 3344 66543 34455444
Q ss_pred ---CCC-------ccccchhhh-----hhccc-cCCCCCh-hhhhcCC-eEeec----------CCHHHHHHHHHHHHHh
Q 043238 84 ---TPS-------AVSMKPVRR-----VCFIS-AWGSPGA-RKARHGP-SLMPG----------GSFEAYNNIRDILQRV 135 (426)
Q Consensus 84 ---~p~-------s~~~~t~rr-----~~~v~-~pVsGg~-~gA~~G~-slm~G----------G~~~a~~~v~~iL~~i 135 (426)
.+. |+.+...+. ..|++ .|+.|++ .++..|. .+|.| +++++++.++++++.+
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~l 158 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSL 158 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHc
Confidence 333 222222221 46888 7999987 5666555 44444 6899999999999999
Q ss_pred hcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHH
Q 043238 136 AAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDM 169 (426)
Q Consensus 136 aa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m 169 (426)
| .+++++++.+....++++.+...+...
T Consensus 159 G------~~~v~~~~~~hD~~~a~~shlp~~~a~ 186 (279)
T PRK07417 159 G------SKIYTADPEEHDRAVALISHLPVMVSA 186 (279)
T ss_pred C------CEEEEcCHHHHHHHHHHHcchHHHHHH
Confidence 9 678899999999999999887755443
No 45
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.37 E-value=1.4e-11 Score=121.47 Aligned_cols=163 Identities=14% Similarity=0.167 Sum_probs=111.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh-------ccccC-C--------CCcccccCCCC-----
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR-------AHRED-R--------PLHSQGLRPLH----- 65 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~-------~~~~~-~--------~~~~~~~~~~~----- 65 (426)
++|+|||+|.||.+||.+|+++|++|++||+++++++++.+. +...+ + ..+++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 579999999999999999999999999999999998876431 11100 0 00123333432
Q ss_pred CC-cE--ecCCchHHH-HHhh----cCCC--------ccccchhh-------h---hhccccCCCCChhhhhcCC-eEee
Q 043238 66 PT-PQ--IHHHRPLGE-TSGT----STPS--------AVSMKPVR-------R---VCFISAWGSPGARKARHGP-SLMP 118 (426)
Q Consensus 66 ~~-vI--v~~g~~vd~-vl~~----l~p~--------s~~~~t~r-------r---~~~v~~pVsGg~~gA~~G~-slm~ 118 (426)
.+ +| ||....+.. ++.+ +.|. |+.+.... | .+|+ +|++++ + ..|+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lve~v 153 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLVELI 153 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceEEEe
Confidence 33 44 777665433 3332 3333 23332211 1 6888 788774 5 8888
Q ss_pred cC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 119 GG---SFEAYNNIRDILQRVAAHVDDGPCITYIGE-GGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 119 GG---~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~-~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+| +++++++++++|+.++ +.++++|+ +| .+.|-+.+ ..+.|++.+++.+- .+++++-..
T Consensus 154 ~g~~t~~~~~~~~~~~l~~lg------~~~v~v~d~~G------f~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD~~ 216 (288)
T PRK09260 154 RGLETSDETVQVAKEVAEQMG------KETVVVNEFPG------FVTSRISA---LVGNEAFYMLQEGV-ATAEDIDKA 216 (288)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CeEEEecCccc------HHHHHHHH---HHHHHHHHHHHcCC-CCHHHHHHH
Confidence 88 9999999999999999 78889986 33 23454444 35679999998865 688888777
No 46
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.32 E-value=2.5e-11 Score=118.89 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=114.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC--eEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHhh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF--QISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGT 82 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~--~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~ 82 (426)
|+|||||+|.||++||++|.++|+ +|++|||++++.+.+.+.+...... ......+. +.+| +|+.. +.+++.+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~-~~~~~~~a-D~Vilavp~~~-~~~~~~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIV-SFEELKKC-DVIFLAIPVDA-IIEILPK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccC-CHHHHhcC-CEEEEeCcHHH-HHHHHHH
Confidence 379999999999999999999996 7999999999988877655321100 00001111 3344 66654 4455555
Q ss_pred cC---CC-------ccccchhhh------hhcccc-CCCCC----hhhhh----cCC-eEeec---CCHHHHHHHHHHHH
Q 043238 83 ST---PS-------AVSMKPVRR------VCFISA-WGSPG----ARKAR----HGP-SLMPG---GSFEAYNNIRDILQ 133 (426)
Q Consensus 83 l~---p~-------s~~~~t~rr------~~~v~~-pVsGg----~~gA~----~G~-slm~G---G~~~a~~~v~~iL~ 133 (426)
+. +. +..+...+. ..|+++ |++|+ +..+. .|. .++++ ++++.++.++++|+
T Consensus 78 l~~l~~~~iv~d~gs~k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~ 157 (275)
T PRK08507 78 LLDIKENTTIIDLGSTKAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFS 157 (275)
T ss_pred HhccCCCCEEEECccchHHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 43 33 221111111 358887 99985 44443 465 55654 57889999999999
Q ss_pred HhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 134 RVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 134 ~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
.++ .+++++++.+....++++.+.. .....++++++. . +.+.+++.++
T Consensus 158 ~~G------~~~~~~~~~~hD~~~a~vs~lp-h~~a~~l~~~~~--~---~~~~~~~~~~ 205 (275)
T PRK08507 158 GLG------MRIVYMDAKEHDLHAAYISHLP-HIISFALANTVL--K---EEDERNIFDL 205 (275)
T ss_pred HhC------CEEEEeCHHHHHHHHHHHhHHH-HHHHHHHHHHHH--h---cCChHHHHhh
Confidence 999 6799999999999999998875 345555555542 1 2566665444
No 47
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.31 E-value=2.8e-11 Score=104.28 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=86.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHh-hhccCCCCCCcchhhHH
Q 043238 152 GSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADI-FKVKDEYGEGELVDKIL 230 (426)
Q Consensus 152 Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~i-l~~~~~~~~~~lld~i~ 230 (426)
|+|+.+|+++|.+.++.+.+++|++.++++.| +|++++.++ .+.|...|+..+...+. +. ++++.+.|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~v---l~~~~~~s~~~~~~~~~~~~-~~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDV---LSAGSGGSWMLKNRAPRMIL-NGDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHH---HHTSTTHBHHHHHHHHHHHH-TTTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHH---HccCCcCchHHHhhhhhhhh-cccCCccchhHhhc
Confidence 78999999999999999999999999999998 999999999 57788888888877663 44 35678899999999
Q ss_pred HhhcccchHHHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 043238 231 DKTGMKGTRKWTIQQAAELLVAALTIAASLDCRYLSG 267 (426)
Q Consensus 231 kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~~r~~s~ 267 (426)
||+. ++++.|.+.|+|+|+.+.+.+ .+..
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~~~--~~~~ 104 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAARQ--LYQA 104 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHHHH--HHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHHHH--HHHH
Confidence 9998 999999999999999998876 5443
No 48
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.26 E-value=7e-11 Score=117.57 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=108.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh-----cccc--CC----CCcccccCCCC------CCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR-----AHRE--DR----PLHSQGLRPLH------PTP 68 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~-----~~~~--~~----~~~~~~~~~~~------~~v 68 (426)
+++|||||+|.||.+||..|+++|++|++||+++++++.+.+. +... .. ..++..+.+++ +.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4689999999999999999999999999999999988776642 1100 00 00122222221 334
Q ss_pred E--ecCCch-HHHHHhhcC----CC------ccccchh-------h--h---hhccccCCCCChhhhhcCCeEeecC--C
Q 043238 69 Q--IHHHRP-LGETSGTST----PS------AVSMKPV-------R--R---VCFISAWGSPGARKARHGPSLMPGG--S 121 (426)
Q Consensus 69 I--v~~g~~-vd~vl~~l~----p~------s~~~~t~-------r--r---~~~v~~pVsGg~~gA~~G~slm~GG--~ 121 (426)
| ||+... ...++.++. +. +...... + | .+|.+.|..+. ...+++|. +
T Consensus 84 i~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~------l~~i~~g~~t~ 157 (311)
T PRK06130 84 IEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIP------LVEVVRGDKTS 157 (311)
T ss_pred EEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCc------eEEEeCCCCCC
Confidence 4 776643 345554432 22 1110000 0 0 34433332211 11344443 7
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 122 FEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 122 ~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
+++++.++++|+.++ .+++++++...|. +++|.+ ...++|++.|+++++ ++++++.+++
T Consensus 158 ~~~~~~v~~l~~~~G------~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~-~~~~~id~~~ 216 (311)
T PRK06130 158 PQTVATTMALLRSIG------KRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGV-ASAEDIDEVV 216 (311)
T ss_pred HHHHHHHHHHHHHcC------CEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 999999999999999 6788998755554 666653 367999999999877 9999999883
No 49
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.22 E-value=1.6e-10 Score=114.13 Aligned_cols=168 Identities=12% Similarity=0.151 Sum_probs=107.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh-----------ccccC-----CCCcccccCCCC----
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR-----------AHRED-----RPLHSQGLRPLH---- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~-----------~~~~~-----~~~~~~~~~~~~---- 65 (426)
.++|+|||+|.||.+||.+|+++|++|.+|||++++++.+.+. +.... ...+++...+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLAD 83 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhcC
Confidence 4689999999999999999999999999999999988765421 11000 001123333332
Q ss_pred -CCcE--ecCCchH-HHHHhh----cCCC--------ccccc-----hhh--h---hhccc-cCCCCChhhhhcCCeEee
Q 043238 66 -PTPQ--IHHHRPL-GETSGT----STPS--------AVSMK-----PVR--R---VCFIS-AWGSPGARKARHGPSLMP 118 (426)
Q Consensus 66 -~~vI--v~~g~~v-d~vl~~----l~p~--------s~~~~-----t~r--r---~~~v~-~pVsGg~~gA~~G~slm~ 118 (426)
+.+| ||....+ ..++.+ +.+. ++.+. ..+ | ++|++ +|++++.+- ...+
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei-----~~g~ 158 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVEL-----IRGI 158 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEE-----eCCC
Confidence 3344 7766444 333333 3333 11111 111 1 67777 566644320 1225
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 119 GGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 119 GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+++++.+++++++|+.++ +.++++++.+ -+++++.+ ...+.|++.++.++. .+++++-.+
T Consensus 159 ~t~~~~~~~~~~~~~~~g------k~~v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~-~~~~~iD~~ 218 (292)
T PRK07530 159 ATDEATFEAAKEFVTKLG------KTITVAEDFP----AFIVNRIL----LPMINEAIYTLYEGV-GSVEAIDTA 218 (292)
T ss_pred CCCHHHHHHHHHHHHHcC------CeEEEecCcC----ChHHHHHH----HHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 699999999999999999 7788888644 35665543 344679999999865 588888777
No 50
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.20 E-value=4.7e-10 Score=110.90 Aligned_cols=165 Identities=14% Similarity=0.202 Sum_probs=105.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHH-----------HHHhccccC-----CCCcccccCCCC----
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDE-----------TLDRAHRED-----RPLHSQGLRPLH---- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~-----------l~~~~~~~~-----~~~~~~~~~~~~---- 65 (426)
+++|||||+|.||.+||.+|+++|++|.+||+++++++. +.+.+.-.. .-..+....+.+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD 83 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence 357999999999999999999999999999999988763 222221000 000111122211
Q ss_pred -CCcE--ecCCchHHHH-Hhh----cCCC--------ccccchhh-------h---hhccccCCCCChhhhhcCCeEee-
Q 043238 66 -PTPQ--IHHHRPLGET-SGT----STPS--------AVSMKPVR-------R---VCFISAWGSPGARKARHGPSLMP- 118 (426)
Q Consensus 66 -~~vI--v~~g~~vd~v-l~~----l~p~--------s~~~~t~r-------r---~~~v~~pVsGg~~gA~~G~slm~- 118 (426)
+.+| |+.+..+... +.+ +.|. ++.+.... | ++|++.|+++.- ..++
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l-------veiv~ 156 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL-------VEIIR 156 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce-------EEEeC
Confidence 3344 7766665443 322 3333 22221111 1 678888876421 3343
Q ss_pred --cCCHHHHHHHHHHHHHhhcccCCCCcEEEeCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 119 --GGSFEAYNNIRDILQRVAAHVDDGPCITYIGE-GGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 119 --GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~-~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+++++++++++++|+.++ .++.++|+ .| .+.|-+.+. .+.|++.++..+. .+++++-..
T Consensus 157 g~~t~~e~~~~~~~ll~~lG------~~~~~~~d~~g------~i~nri~~~---~~~ea~~~~~~gv-~~~~~iD~~ 218 (295)
T PLN02545 157 GADTSDEVFDATKALAERFG------KTVVCSQDYPG------FIVNRILMP---MINEAFYALYTGV-ASKEDIDTG 218 (295)
T ss_pred CCCCCHHHHHHHHHHHHHcC------CeeEEecCccc------HHHHHHHHH---HHHHHHHHHHcCC-CCHHHHHHH
Confidence 369999999999999999 77888886 34 244444433 4789999999866 788887766
No 51
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.20 E-value=3.4e-10 Score=111.65 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=114.4
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHH-----------HHHhccccC-----CCCcccccCCC
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDE-----------TLDRAHRED-----RPLHSQGLRPL 64 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~-----------l~~~~~~~~-----~~~~~~~~~~~ 64 (426)
|++.+ .+|||||+|.||..||.+|+.+|++|++||++++..+. +.+.+.... .-.+++.+.++
T Consensus 1 ~~~~~-~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~ 79 (286)
T PRK07819 1 MSDAI-QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL 79 (286)
T ss_pred CCCCc-cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH
Confidence 66665 48999999999999999999999999999999998776 333332110 00122333343
Q ss_pred C-----CCcE--ecCCchHHHHH----hhc--CCC-------ccccchhh--------h---hhccc-cCCCCChhhhhc
Q 043238 65 H-----PTPQ--IHHHRPLGETS----GTS--TPS-------AVSMKPVR--------R---VCFIS-AWGSPGARKARH 112 (426)
Q Consensus 65 ~-----~~vI--v~~g~~vd~vl----~~l--~p~-------s~~~~t~r--------r---~~~v~-~pVsGg~~gA~~ 112 (426)
+ +.+| |+....++..+ +++ .|. |..+-+.. | .||++ +++++..+-
T Consensus 80 ~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl--- 156 (286)
T PRK07819 80 GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL--- 156 (286)
T ss_pred HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE---
Confidence 3 3344 77777665543 455 444 22232221 1 68888 677776521
Q ss_pred CCeEeecCCHHHHHHHHHHHH-HhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 043238 113 GPSLMPGGSFEAYNNIRDILQ-RVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELA 191 (426)
Q Consensus 113 G~slm~GG~~~a~~~v~~iL~-~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia 191 (426)
....++++++++++.+++. .++ +.+..+++ ..|- +-|-+. ...+.|++.++.++. .++++|-
T Consensus 157 --v~~~~T~~~~~~~~~~~~~~~lg------k~pv~v~d-~pGf----i~nRi~---~~~~~Ea~~ll~eGv-~~~~dID 219 (286)
T PRK07819 157 --VPTLVTSEATVARAEEFASDVLG------KQVVRAQD-RSGF----VVNALL---VPYLLSAIRMVESGF-ATAEDID 219 (286)
T ss_pred --eCCCCCCHHHHHHHHHHHHHhCC------CCceEecC-CCCh----HHHHHH---HHHHHHHHHHHHhCC-CCHHHHH
Confidence 4557789999999999988 588 67788875 2232 334433 345679999998865 7888887
Q ss_pred HH
Q 043238 192 EI 193 (426)
Q Consensus 192 ~i 193 (426)
.+
T Consensus 220 ~~ 221 (286)
T PRK07819 220 KA 221 (286)
T ss_pred HH
Confidence 77
No 52
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.19 E-value=4.8e-10 Score=114.69 Aligned_cols=161 Identities=13% Similarity=0.108 Sum_probs=114.5
Q ss_pred CCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHh
Q 043238 5 ALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSG 81 (426)
Q Consensus 5 ~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~ 81 (426)
.+++|+||| +|.||..||++|.++|++|.+|||++.. ...+. .... +.+| +|... ..++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~~~~~------------~~~a-DlVilavP~~~-~~~~~~ 160 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--RAEDI------------LADA-GMVIVSVPIHL-TEEVIA 160 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--hHHHH------------HhcC-CEEEEeCcHHH-HHHHHH
Confidence 346899998 9999999999999999999999987531 11110 1111 2344 66654 344444
Q ss_pred hc---CCC-------ccccchhhh------hhcc-ccCCCCChhhhhcCC-eEeecC-CHHHHHHHHHHHHHhhcccCCC
Q 043238 82 TS---TPS-------AVSMKPVRR------VCFI-SAWGSPGARKARHGP-SLMPGG-SFEAYNNIRDILQRVAAHVDDG 142 (426)
Q Consensus 82 ~l---~p~-------s~~~~t~rr------~~~v-~~pVsGg~~gA~~G~-slm~GG-~~~a~~~v~~iL~~iaa~~~~~ 142 (426)
++ .|+ |.-+...+. ..|+ ..|+.|.+.....|. .++++| ++++++.++++++.+|
T Consensus 161 ~l~~l~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG------ 234 (374)
T PRK11199 161 RLPPLPEDCILVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWG------ 234 (374)
T ss_pred HHhCCCCCcEEEECCCccHHHHHHHHHhCCCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCC------
Confidence 44 444 222221111 3588 689999887777777 566666 6688999999999999
Q ss_pred CcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 043238 143 PCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAE 192 (426)
Q Consensus 143 ~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~ 192 (426)
.+++++++.+....++++. .+ .++.+++++..+.+ .+ .+.+++.+
T Consensus 235 ~~v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 235 ARLHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred CEEEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 6799999999999999998 44 88889999998876 44 77777644
No 53
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.16 E-value=2.2e-10 Score=113.16 Aligned_cols=168 Identities=11% Similarity=0.129 Sum_probs=112.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh--------------ccccC-----CCCcccccCCCC-
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR--------------AHRED-----RPLHSQGLRPLH- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~--------------~~~~~-----~~~~~~~~~~~~- 65 (426)
.++|+|||+|.||.+||..|+++|++|++||+++++++...+. +.... ...++....+.+
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 82 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYES 82 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHH
Confidence 3689999999999999999999999999999999987653221 11000 000112222211
Q ss_pred ----CCcE--ecCCchH-HHHHhhc----CCC----c----cc-----cchh--hh---hhccc-cCCCCChhhhhcCCe
Q 043238 66 ----PTPQ--IHHHRPL-GETSGTS----TPS----A----VS-----MKPV--RR---VCFIS-AWGSPGARKARHGPS 115 (426)
Q Consensus 66 ----~~vI--v~~g~~v-d~vl~~l----~p~----s----~~-----~~t~--rr---~~~v~-~pVsGg~~gA~~G~s 115 (426)
+.+| ++....+ .+++++| .+. | +. .... .| .+|++ ++++++.+ +..|+.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~~g~~ 161 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE-VVRAAL 161 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE-EeCCCC
Confidence 3344 6665432 3444433 232 1 11 0011 11 67887 88888765 345552
Q ss_pred EeecCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 116 LMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 116 lm~GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
. ++++++++.++++.++ +.++++++.+.....|+++|. +.|++.++..+. .++++|-.+
T Consensus 162 T----~~e~~~~~~~~~~~lg------k~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~-a~~~~iD~~ 220 (291)
T PRK06035 162 T----SEETFNTTVELSKKIG------KIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGI-ATIKDIDEM 220 (291)
T ss_pred C----CHHHHHHHHHHHHHcC------CeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCC-CCHHHHHHH
Confidence 2 8999999999999999 788999987778888998764 478888888754 688888877
No 54
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.12 E-value=1e-08 Score=107.01 Aligned_cols=173 Identities=16% Similarity=0.175 Sum_probs=109.0
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh-ccccCCCCcccccCCCCCCcE--ecCCchHHHHHhh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR-AHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGT 82 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~ 82 (426)
|+|+||| +|.||.+||..|.++|++|.+|+|++++.+++... +.... .......... +.+| +|. ..+.+++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~-~~~~e~~~~a-DvVIlavp~-~~~~~vl~~ 77 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYA-NDNIDAAKDA-DIVIISVPI-NVTEDVIKE 77 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeec-cCHHHHhccC-CEEEEecCH-HHHHHHHHH
Confidence 4799997 99999999999999999999999999886555443 22110 0000111111 3344 555 345667766
Q ss_pred cCC----C-------ccccchhhh--------hhcccc-CCCCChhhhhcCC-eEeec---CCHHHHHHHHHHHHHhhcc
Q 043238 83 STP----S-------AVSMKPVRR--------VCFISA-WGSPGARKARHGP-SLMPG---GSFEAYNNIRDILQRVAAH 138 (426)
Q Consensus 83 l~p----~-------s~~~~t~rr--------~~~v~~-pVsGg~~gA~~G~-slm~G---G~~~a~~~v~~iL~~iaa~ 138 (426)
+.| + |..+...+. ..|+++ |+.|.......|. .++.. .+++.++.++++|+.++
T Consensus 78 l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G-- 155 (437)
T PRK08655 78 VAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG-- 155 (437)
T ss_pred HHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC--
Confidence 544 3 221222121 468876 9998655566777 55543 36888999999999999
Q ss_pred cCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 139 VDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 139 ~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
.++.++++... -+++.+.....++.+++.+..+ ++.+ ++.++...+
T Consensus 156 ----~~v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~~ 201 (437)
T PRK08655 156 ----ARVIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRKF 201 (437)
T ss_pred ----CEEEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHhh
Confidence 56788887533 4444444445556666666554 4444 887765443
No 55
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.06 E-value=9.6e-10 Score=109.35 Aligned_cols=141 Identities=14% Similarity=0.201 Sum_probs=94.6
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCC--eEEEEeCCccchHHHHHhccccCCCCcccccCCC----C-CCc-E--e
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGF--QISVYNRTTSKVDETLDRAHREDRPLHSQGLRPL----H-PTP-Q--I 70 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~--~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~----~-~~v-I--v 70 (426)
|+..+.++|+|||+|.||..+|..|.++|+ +|.+|||++++.+.+.+.+... ..+.++ + +++ | +
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~------~~~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGD------RVTTSAAEAVKGADLVILCV 74 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCc------eecCCHHHHhcCCCEEEECC
Confidence 888888899999999999999999999995 8999999999888776654321 111121 1 333 3 5
Q ss_pred cCCchHHHHHhhc----CCC-------ccccchhhh--------hhcccc-CCCCChh-hhhcCC--------eEe---e
Q 043238 71 HHHRPLGETSGTS----TPS-------AVSMKPVRR--------VCFISA-WGSPGAR-KARHGP--------SLM---P 118 (426)
Q Consensus 71 ~~g~~vd~vl~~l----~p~-------s~~~~t~rr--------~~~v~~-pVsGg~~-gA~~G~--------slm---~ 118 (426)
|+.. +.++++.+ .++ +...+..+. ++|+++ |+.|++. |+..|. .++ .
T Consensus 75 p~~~-~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~ 153 (307)
T PRK07502 75 PVGA-SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPE 153 (307)
T ss_pred CHHH-HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCC
Confidence 5543 44555443 343 222222211 578886 9998652 333332 222 4
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchh
Q 043238 119 GGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSG 154 (426)
Q Consensus 119 GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag 154 (426)
++++++++.++++|+.++ .++.++++..-.
T Consensus 154 ~~~~~~~~~~~~l~~~lG------~~~~~~~~~~hD 183 (307)
T PRK07502 154 GTDPAAVARLTAFWRALG------ARVEEMDPEHHD 183 (307)
T ss_pred CCCHHHHHHHHHHHHHcC------CEEEEcCHHHHh
Confidence 678999999999999999 577888865433
No 56
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.03 E-value=6.9e-10 Score=109.96 Aligned_cols=242 Identities=15% Similarity=0.124 Sum_probs=146.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccC------CCCcccccCCCC-----CC-cE-ecC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRED------RPLHSQGLRPLH-----PT-PQ-IHH 72 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~------~~~~~~~~~~~~-----~~-vI-v~~ 72 (426)
+++|+|||.|.||++||.-|+++||+|.+|.|+++-++++.....+.. ++.++....|++ .+ +| +.|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 468999999999999999999999999999999999999877643332 234555555554 33 33 555
Q ss_pred CchHHHHHhhcCCC------------ccccchhhh-----hhccc---cCCCCCh----hhhhcCC-eE-eecCCHHHHH
Q 043238 73 HRPLGETSGTSTPS------------AVSMKPVRR-----VCFIS---AWGSPGA----RKARHGP-SL-MPGGSFEAYN 126 (426)
Q Consensus 73 g~~vd~vl~~l~p~------------s~~~~t~rr-----~~~v~---~pVsGg~----~gA~~G~-sl-m~GG~~~a~~ 126 (426)
.+.+++++.++.+. -+.++|.++ -..++ +.|.-|| +-|+.=| .+ ..+-|++..+
T Consensus 81 s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~ 160 (329)
T COG0240 81 SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAE 160 (329)
T ss_pred hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHH
Confidence 67789999887543 345555555 22333 3333343 4555566 44 4555777777
Q ss_pred HHHHHHHHhhcccC-----------C-CCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 127 NIRDILQRVAAHVD-----------D-GPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 127 ~v~~iL~~iaa~~~-----------~-~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
+++.+|..=..++- | -++|+-++ .|-..-+..-.|+-..-+...++|.-.+....| =+++++..+
T Consensus 161 ~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA-~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T~~gL- 237 (329)
T COG0240 161 KVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIA-AGIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPETFMGL- 237 (329)
T ss_pred HHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHH-HHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcchhccc-
Confidence 88888876333321 0 02333332 133334455566666667777888888887766 344444332
Q ss_pred HHhcc-cchh----hHHHHHh--HHhhhccCCCCCCcchhhHHHhhcccchHHH----HHHHHHHcCCChhHHHHH
Q 043238 195 DEWNK-GELE----SFLVQIT--ADIFKVKDEYGEGELVDKILDKTGMKGTRKW----TIQQAAELLVAALTIAAS 259 (426)
Q Consensus 195 ~~W~~-G~i~----S~L~ei~--~~il~~~~~~~~~~lld~i~kd~~qkgtg~w----~v~~A~~~gvp~P~isaA 259 (426)
.+ |.+. |-..+.+ +..+.+ +..++..+....|.-.|.- +.+.|.++++.+|.+.+-
T Consensus 238 ---sGlGDLilTCts~~SRN~r~G~~lg~------g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~V 304 (329)
T COG0240 238 ---SGLGDLILTCTSPLSRNRRFGLLLGQ------GLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAV 304 (329)
T ss_pred ---ccccceeEecCCCccccHHHHHHHhC------CCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 22 4333 2222222 122322 2334555555555444433 777899999999987644
No 57
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.01 E-value=4.9e-08 Score=94.94 Aligned_cols=225 Identities=14% Similarity=0.136 Sum_probs=120.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCC---CeEEEEeCCccchHHHHHh-ccccCCCCcccccCCCCCCcE--ecCCchHHH
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKG---FQISVYNRTTSKVDETLDR-AHREDRPLHSQGLRPLHPTPQ--IHHHRPLGE 78 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G---~~V~vynr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~ 78 (426)
||++|+|||+|.||+.++..|.++| ++|.+|+|++++.+.+.+. +.... .+.-...... +.+| +|+ ..+.+
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~-~~~~~~~~~a-dvVil~v~~-~~~~~ 77 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA-TDNQEAAQEA-DVVVLAVKP-QVMEE 77 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec-CChHHHHhcC-CEEEEEcCH-HHHHH
Confidence 4679999999999999999999999 7999999999998888764 32110 0000111111 3333 555 44778
Q ss_pred HHhhcCCC----------ccccchhhh-----hhccc-cCCCCChhhhhcCC-eEeecC--CHHHHHHHHHHHHHhhccc
Q 043238 79 TSGTSTPS----------AVSMKPVRR-----VCFIS-AWGSPGARKARHGP-SLMPGG--SFEAYNNIRDILQRVAAHV 139 (426)
Q Consensus 79 vl~~l~p~----------s~~~~t~rr-----~~~v~-~pVsGg~~gA~~G~-slm~GG--~~~a~~~v~~iL~~iaa~~ 139 (426)
+++.+.|. .+..+..++ .+++. +| ..+.....|. .+.++. ++++++.++.+|+.++
T Consensus 78 v~~~l~~~~~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG--- 152 (267)
T PRK11880 78 VLSELKGQLDKLVVSIAAGVTLARLERLLGADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELVENLLSAFG--- 152 (267)
T ss_pred HHHHHHhhcCCEEEEecCCCCHHHHHHhcCCCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCC---
Confidence 88776652 111111111 11221 12 1222333344 456664 8999999999999999
Q ss_pred CCCCcEEEeCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccC
Q 043238 140 DDGPCITYIGEGGSGNFVK-MVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKD 218 (426)
Q Consensus 140 ~~~~~v~~vG~~Gag~~vK-mv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~ 218 (426)
. +.++.+...=+.+= +..++ -+.+..+.|++...-...|++.++..++...+-.| +.+.+.+.+
T Consensus 153 ---~-~~~~~~e~~~d~~~a~~~~~--pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g---------~~~~~~~~~ 217 (267)
T PRK11880 153 ---K-VVWVDDEKQMDAVTAVSGSG--PAYVFLFIEALADAGVKLGLPREQARKLAAQTVLG---------AAKLLLESG 217 (267)
T ss_pred ---e-EEEECChHhcchHHHHhcCh--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------HHHHHHhcC
Confidence 3 56776322111111 11111 12223444555444333359999988874332222 123333222
Q ss_pred CCCCCcchhhHHHhhcccc-hHHHHHHHHHHcCCChhHHH
Q 043238 219 EYGEGELVDKILDKTGMKG-TRKWTIQQAAELLVAALTIA 257 (426)
Q Consensus 219 ~~~~~~lld~i~kd~~qkg-tg~w~v~~A~~~gvp~P~is 257 (426)
. ..+...+.+..+| |..-.+....+.|++-..+.
T Consensus 218 ~-----~~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 218 E-----HPAELRDNVTSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred C-----CHHHHHHhCCCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 1 1233334444443 33335555556777654433
No 58
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.96 E-value=1.2e-08 Score=100.36 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=104.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchH-----------HHHHhccccC-----CCCcccccCCCC----
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVD-----------ETLDRAHRED-----RPLHSQGLRPLH---- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~-----------~l~~~~~~~~-----~~~~~~~~~~~~---- 65 (426)
+++|+|||+|.||.++|..|+++|++|++||+++++++ .+.+.+.... .-.++....+.+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 35899999999999999999999999999999999875 3333331100 000122233322
Q ss_pred CCc-E--ecCCchHH-HHHhhcC----CCcc------ccc-------hhh--h---hhccc-cCCCCChhhhhcCCeEee
Q 043238 66 PTP-Q--IHHHRPLG-ETSGTST----PSAV------SMK-------PVR--R---VCFIS-AWGSPGARKARHGPSLMP 118 (426)
Q Consensus 66 ~~v-I--v~~g~~vd-~vl~~l~----p~s~------~~~-------t~r--r---~~~v~-~pVsGg~~gA~~G~slm~ 118 (426)
+++ | +|....+. +++.+|. |.++ ... ..+ | .+|.. +++.++.+ ...| .
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g----~ 157 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG----L 157 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEE-EeCC----C
Confidence 333 3 65544433 4554443 3211 100 000 1 45555 55655543 2222 5
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 119 GGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 119 GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+++++.++.++++|+.++ +.+.+++. ..| .+-|-|.+ ..+.|++.+++++- .++++|-.+
T Consensus 158 ~t~~e~~~~~~~l~~~lG------k~pv~~~d-~~g----~i~~Ri~~---~~~~ea~~~~~~gv-~~~~diD~~ 217 (282)
T PRK05808 158 ATSDATHEAVEALAKKIG------KTPVEVKN-APG----FVVNRILI---PMINEAIFVLAEGV-ATAEDIDEG 217 (282)
T ss_pred CCCHHHHHHHHHHHHHcC------CeeEEecC-ccC----hHHHHHHH---HHHHHHHHHHHhCC-CCHHHHHHH
Confidence 579999999999999999 78888874 223 24444433 45579999998865 778888777
No 59
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.95 E-value=8.9e-09 Score=99.87 Aligned_cols=161 Identities=9% Similarity=0.046 Sum_probs=98.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCe---EEEEeCCccchHHHHHhccccCCCCcccccCCCC------CCcE--ecCCch
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQ---ISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH------PTPQ--IHHHRP 75 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~---V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~vI--v~~g~~ 75 (426)
|+|||||+|.||++|+++|.+.|+. |.+|||++++.+++.+.... +..+.+.. +.+| +++ +.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~------~~~~~~~~~~~~~aDvVilav~p-~~ 73 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPK------VRIAKDNQAVVDRSDVVFLAVRP-QI 73 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCC------ceEeCCHHHHHHhCCEEEEEeCH-HH
Confidence 3799999999999999999999864 58999999999888765311 11222221 3344 664 55
Q ss_pred HHHHHhhcC--CC----c----cccchhhh------hhccccCCCCChhhhhcCCeEeecCCHHHHHHHHHHHHHhhccc
Q 043238 76 LGETSGTST--PS----A----VSMKPVRR------VCFISAWGSPGARKARHGPSLMPGGSFEAYNNIRDILQRVAAHV 139 (426)
Q Consensus 76 vd~vl~~l~--p~----s----~~~~t~rr------~~~v~~pVsGg~~gA~~G~slm~GG~~~a~~~v~~iL~~iaa~~ 139 (426)
+.++++.+. ++ + ...+..++ ..+..+|..... ...|.+.+.+++ +.++++|+.++
T Consensus 74 ~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~~lG--- 144 (258)
T PRK06476 74 AEEVLRALRFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFDALG--- 144 (258)
T ss_pred HHHHHHHhccCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHHhcC---
Confidence 777877653 32 1 11111111 234466763222 233556666664 57899999999
Q ss_pred CCCCcEEEeCCCchhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 140 DDGPCITYIGEGGSGNFVKMVHNG-----IEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 140 ~~~~~v~~vG~~Gag~~vKmv~N~-----i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
.+ .++++. |...+. .-...+..+.++..++.+.| ++.++..++.
T Consensus 145 ---~~-~~~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~ 193 (258)
T PRK06476 145 ---TA-VECDSE------EEYDLLAAASALMATYFGILETATGWLEEQG-LKRQKARAYL 193 (258)
T ss_pred ---Cc-EEECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 33 346532 111111 22223345667777888887 9999988873
No 60
>PRK07680 late competence protein ComER; Validated
Probab=98.94 E-value=1.3e-08 Score=99.56 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=101.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC----eEEEEeCCccchHHHHHhccccCCCCcccccCCCC-----CC-cE--ecCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF----QISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-----PT-PQ--IHHHR 74 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~----~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~-vI--v~~g~ 74 (426)
|+|||||+|.||++|+.+|.++|+ +|.+|||++++.+.+.+... .+..+.+.. ++ +| +|+ .
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~------g~~~~~~~~~~~~~aDiVilav~p-~ 73 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP------GIHVAKTIEEVISQSDLIFICVKP-L 73 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC------CeEEECCHHHHHHhCCEEEEecCH-H
Confidence 379999999999999999999994 79999999999888765421 011222221 33 33 654 4
Q ss_pred hHHHHHhhcCCC--------cccc-chhhh---------hhccccCCCCChhhhhcCC-eEeec--CCHHHHHHHHHHHH
Q 043238 75 PLGETSGTSTPS--------AVSM-KPVRR---------VCFISAWGSPGARKARHGP-SLMPG--GSFEAYNNIRDILQ 133 (426)
Q Consensus 75 ~vd~vl~~l~p~--------s~~~-~t~rr---------~~~v~~pVsGg~~gA~~G~-slm~G--G~~~a~~~v~~iL~ 133 (426)
.+.++++++.|. ++.. -+.+. ++++. +.+.++..|. .+++| .+++.++.++++|+
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~ 149 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLFS 149 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHH
Confidence 467777766542 1111 01111 23332 2334566788 45555 56788899999999
Q ss_pred HhhcccCCCCcEEEeCCCchhhHHHHHH--HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 134 RVAAHVDDGPCITYIGEGGSGNFVKMVH--NGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 134 ~iaa~~~~~~~v~~vG~~Gag~~vKmv~--N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
.++ ++.++.+.---.+.-+.+ -++.+..+.++.++- +++.| ++.++..++.
T Consensus 150 ~~G-------~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~ 202 (273)
T PRK07680 150 NIS-------TPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLA 202 (273)
T ss_pred cCC-------CEEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHH
Confidence 999 456666531111111122 235555556566543 23345 9999988874
No 61
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.91 E-value=2.1e-08 Score=98.25 Aligned_cols=170 Identities=11% Similarity=0.011 Sum_probs=100.8
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC----eEEEEeCCccchHHHHH-hccccCCCCcccccCCCC-----CCc-E--ec
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF----QISVYNRTTSKVDETLD-RAHREDRPLHSQGLRPLH-----PTP-Q--IH 71 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~----~V~vynr~~~~~~~l~~-~~~~~~~~~~~~~~~~~~-----~~v-I--v~ 71 (426)
|.++|||||+|.||.+|+.+|.++|+ +|.+|||++++.+.+.+ .+.. .+.+.+ +++ | |+
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~--------~~~~~~e~~~~aDiIiLavk 72 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGIT--------ITTNNNEVANSADILILSIK 72 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcE--------EeCCcHHHHhhCCEEEEEeC
Confidence 45689999999999999999999885 69999999999888875 3321 122221 344 4 88
Q ss_pred CCchHHHHHhhcCCC--------ccccch-hhh-hhcccc--CCCC----ChhhhhcCCeE-eec--CCHHHHHHHHHHH
Q 043238 72 HHRPLGETSGTSTPS--------AVSMKP-VRR-VCFISA--WGSP----GARKARHGPSL-MPG--GSFEAYNNIRDIL 132 (426)
Q Consensus 72 ~g~~vd~vl~~l~p~--------s~~~~t-~rr-~~~v~~--pVsG----g~~gA~~G~sl-m~G--G~~~a~~~v~~iL 132 (426)
+ +.+.+|++++.+. |+-... ... -.+++. +|.. .+.....|.+. .++ -+++..+.++.+|
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf 151 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIF 151 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHH
Confidence 7 6688888876542 111110 001 123321 2221 22344456633 333 2456778899999
Q ss_pred HHhhcccCCCCcEEEeCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 133 QRVAAHVDDGPCITYIGEGG--SGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 133 ~~iaa~~~~~~~v~~vG~~G--ag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
+.+| . +.++.+.- ....+==.--++.+-.+.++.++-. +. |++.++-.++.
T Consensus 152 ~~~G------~-~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v---~~-Gl~~~~A~~l~ 204 (272)
T PRK12491 152 NIFG------Q-TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAV---LG-GMPRKQAYKFA 204 (272)
T ss_pred HcCC------C-EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHH---Hc-CCCHHHHHHHH
Confidence 9999 3 45665421 1111111113455555666655532 33 59999888873
No 62
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=2.3e-07 Score=93.04 Aligned_cols=42 Identities=14% Similarity=0.416 Sum_probs=38.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
|+|+|||.|.||+.+|..|+++|++|++|+|+++.++.+.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~ 42 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK 42 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc
Confidence 379999999999999999999999999999999888888764
No 63
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.82 E-value=4.3e-08 Score=96.65 Aligned_cols=171 Identities=12% Similarity=0.206 Sum_probs=103.4
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc-------c-ccCC---------CCcccccCCCC---
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA-------H-REDR---------PLHSQGLRPLH--- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~-------~-~~~~---------~~~~~~~~~~~--- 65 (426)
+++|+|||+|.||.+||..|+++|++|++||++++++++..+.. . ...+ ..++..+.+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 46899999999999999999999999999999998776654320 0 0000 01233344432
Q ss_pred ---CCcE--ecCCch-HHHHHhhcC----CC--------ccccchhh----h-hhccccCCCCChhhhhcCC--eEe--e
Q 043238 66 ---PTPQ--IHHHRP-LGETSGTST----PS--------AVSMKPVR----R-VCFISAWGSPGARKARHGP--SLM--P 118 (426)
Q Consensus 66 ---~~vI--v~~g~~-vd~vl~~l~----p~--------s~~~~t~r----r-~~~v~~pVsGg~~gA~~G~--slm--~ 118 (426)
+.+| +|.... ..++++++. +. +..+.... + .+|+++--.. .....+ -++ .
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~---p~~~~~lvevv~~~ 159 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFAN---EIWKNNTAEIMGHP 159 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCC---CCCcCCeEEEeCCC
Confidence 3344 665432 344444432 22 11111111 1 3344432211 112233 344 4
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 119 GGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 119 GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+.++++++.+..+++.++ +....+.+.--|.. -|-|. ...+.|++.++..+. .++++|-.+
T Consensus 160 ~t~~~~~~~~~~~~~~~G------k~pv~v~~d~pgfi----~nRi~---~~~~~ea~~l~~~g~-a~~~~iD~a 220 (287)
T PRK08293 160 GTDPEVFDTVVAFAKAIG------MVPIVLKKEQPGYI----LNSLL---VPFLSAALALWAKGV-ADPETIDKT 220 (287)
T ss_pred CCCHHHHHHHHHHHHHcC------CeEEEecCCCCCHh----HHHHH---HHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 578999999999999999 66677775444432 23332 245689999999866 789998877
No 64
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.80 E-value=1.5e-07 Score=98.94 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=120.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC--CeEEEEeCCccchHHHHHhcccc---CC--------CCcccccCCCC-----CC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG--FQISVYNRTTSKVDETLDRAHRE---DR--------PLHSQGLRPLH-----PT 67 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G--~~V~vynr~~~~~~~l~~~~~~~---~~--------~~~~~~~~~~~-----~~ 67 (426)
||+|+|||+|.+|..+|..|+++| ++|.+||+++++++.+.+..... ++ ..++....+++ .+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 468999999999999999999884 88999999999999876443110 00 01122333322 23
Q ss_pred cE---ec--CC--------c----hHHHHHhh----cCCC-------ccccchhhh-hhcc------------ccC--CC
Q 043238 68 PQ---IH--HH--------R----PLGETSGT----STPS-------AVSMKPVRR-VCFI------------SAW--GS 104 (426)
Q Consensus 68 vI---v~--~g--------~----~vd~vl~~----l~p~-------s~~~~t~rr-~~~v------------~~p--Vs 104 (426)
+| |+ .. . .++++++. ++++ |+.+.|.++ ...+ -+| +.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 33 43 21 1 34555443 4444 777777766 2111 223 11
Q ss_pred CCh--hhhhcCCeEeecCC-----HHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 043238 105 PGA--RKARHGPSLMPGGS-----FEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYD 177 (426)
Q Consensus 105 Gg~--~gA~~G~slm~GG~-----~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~ 177 (426)
-|. ...++-|-+.+||. +++.++++.+++.+.. ...+.+...-++.++|++.|++....+..+-|...
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~-----~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~ 235 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVP-----EERIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhc-----CCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23333346777885 3467888888888761 13445566788999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHH
Q 043238 178 VLKHVGGVSNAELAEI 193 (426)
Q Consensus 178 Ll~~~g~ld~~~ia~i 193 (426)
++++.| +|..++.+.
T Consensus 236 lce~~g-iD~~eV~~~ 250 (473)
T PLN02353 236 LCEATG-ADVSQVSHA 250 (473)
T ss_pred HHHHhC-CCHHHHHHH
Confidence 999887 999998887
No 65
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.79 E-value=8.2e-08 Score=96.15 Aligned_cols=172 Identities=11% Similarity=0.122 Sum_probs=104.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH-----------hccccC-CCCcccccCCCC------CC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD-----------RAHRED-RPLHSQGLRPLH------PT 67 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~-----------~~~~~~-~~~~~~~~~~~~------~~ 67 (426)
.++|||||+|.||..||.+|+.+|++|.+||++++..+.+.+ .+.... ...++..+.+++ +-
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 367999999999999999999999999999999987655332 110000 011333444442 33
Q ss_pred cE--ecCCchHHHHH-h----hcCCC-------c-c-----ccchhh--h---hhccccCCCCChhhhhcCC--eEeec-
Q 043238 68 PQ--IHHHRPLGETS-G----TSTPS-------A-V-----SMKPVR--R---VCFISAWGSPGARKARHGP--SLMPG- 119 (426)
Q Consensus 68 vI--v~~g~~vd~vl-~----~l~p~-------s-~-----~~~t~r--r---~~~v~~pVsGg~~gA~~G~--slm~G- 119 (426)
|| |+....++..+ . .+.|. | + ...+.+ | .||+.-|- .-| =+++|
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~--------~~pLVEVv~g~ 158 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVY--------LLPLVEVLGGE 158 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccc--------cCceEEEeCCC
Confidence 44 66666554432 2 23333 1 1 111111 1 45544220 011 12232
Q ss_pred -CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 043238 120 -GSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWN 198 (426)
Q Consensus 120 -G~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~ 198 (426)
-++++.+.+..+++.++ +..+.+..+--| .+-|-|.++ .+.|++.|+.++. .++++|=.+ |+
T Consensus 159 ~T~~e~~~~~~~f~~~lG------k~pV~v~kd~pG----Fi~NRl~~a---~~~EA~~lv~eGv-as~edID~a---~~ 221 (321)
T PRK07066 159 RTAPEAVDAAMGIYRALG------MRPLHVRKEVPG----FIADRLLEA---LWREALHLVNEGV-ATTGEIDDA---IR 221 (321)
T ss_pred CCCHHHHHHHHHHHHHcC------CEeEecCCCCcc----HHHHHHHHH---HHHHHHHHHHhCC-CCHHHHHHH---HH
Confidence 47899999999999999 666677533333 244555443 5689999999876 899999888 56
Q ss_pred ccch
Q 043238 199 KGEL 202 (426)
Q Consensus 199 ~G~i 202 (426)
.|..
T Consensus 222 ~g~g 225 (321)
T PRK07066 222 FGAG 225 (321)
T ss_pred hCCC
Confidence 5543
No 66
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.75 E-value=4.5e-08 Score=99.65 Aligned_cols=144 Identities=11% Similarity=0.094 Sum_probs=91.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCC----C-CC-cE--ecCCchHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPL----H-PT-PQ--IHHHRPLGE 78 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~----~-~~-vI--v~~g~~vd~ 78 (426)
.+|+|||+|.||.+||++|.++|++|.+|++++++.+.....+.... + ....++ + ++ +| +|+. .+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~-~---~~~~~~~~~~~~aDlVilavP~~-~~~~ 75 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVI-D---ELAADLQRAAAEADLIVLAVPVD-ATAA 75 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCC-c---ccccCHHHHhcCCCEEEEeCCHH-HHHH
Confidence 36999999999999999999999999999999887554433321110 0 011111 1 33 44 6664 5677
Q ss_pred HHhhcCC-----C-------ccccchhh-------h-hhccc-cCCCCCh-hhhh-------cCC-eEeec---CCHHHH
Q 043238 79 TSGTSTP-----S-------AVSMKPVR-------R-VCFIS-AWGSPGA-RKAR-------HGP-SLMPG---GSFEAY 125 (426)
Q Consensus 79 vl~~l~p-----~-------s~~~~t~r-------r-~~~v~-~pVsGg~-~gA~-------~G~-slm~G---G~~~a~ 125 (426)
+++++.+ . |......+ . .+|++ .|+.|++ .|.. .|. .+++. ++++++
T Consensus 76 vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 76 LLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred HHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 7766653 2 22111111 1 57898 6999875 2332 333 33332 588999
Q ss_pred HHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHH
Q 043238 126 NNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVH 161 (426)
Q Consensus 126 ~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~ 161 (426)
+.++.+++.++ .++.++.+..-...+-.+.
T Consensus 156 ~~v~~l~~~lG------a~~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 156 AELKDLLSGTG------AKFVVLDAEEHDRAVALVS 185 (359)
T ss_pred HHHHHHHHHcC------CEEEECCHHHHhHHHhHhc
Confidence 99999999999 5777888765444555543
No 67
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.73 E-value=5.7e-07 Score=88.70 Aligned_cols=43 Identities=14% Similarity=0.366 Sum_probs=39.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
|+|+|||.|.||+.+|..|+++|++|++|+|++++.+.+.+.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g 43 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENG 43 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcC
Confidence 4799999999999999999999999999999988888877654
No 68
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.71 E-value=3.6e-08 Score=99.69 Aligned_cols=243 Identities=11% Similarity=0.051 Sum_probs=130.7
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccC-C------CCcccccCCCC------CCcE--
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRED-R------PLHSQGLRPLH------PTPQ-- 69 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~-~------~~~~~~~~~~~------~~vI-- 69 (426)
.+++|+|||.|.||+.+|..|+++| .|.+|.|+++.++.+.+.+.... + +.++....+++ +.+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 3468999999999999999999999 79999999999988876542211 1 11223333332 3333
Q ss_pred ecCCchHHHHHhhcCCC------------ccccchhhh-----hhccc-cC--CCCChhhhhc---CC--eE-eecCCHH
Q 043238 70 IHHHRPLGETSGTSTPS------------AVSMKPVRR-----VCFIS-AW--GSPGARKARH---GP--SL-MPGGSFE 123 (426)
Q Consensus 70 v~~g~~vd~vl~~l~p~------------s~~~~t~rr-----~~~v~-~p--VsGg~~gA~~---G~--sl-m~GG~~~ 123 (426)
+|+ ..++++++++.|. .+..+|.++ ..+++ .+ +..||.-+.. |. .+ ..+-+++
T Consensus 85 vps-~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~~~ 163 (341)
T PRK12439 85 VPS-HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQH 163 (341)
T ss_pred eCH-HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCCHH
Confidence 554 4578888776653 222222222 22332 12 3334432222 43 33 3344666
Q ss_pred HHHHHHHHHHHhhcccC---CC---------CcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 043238 124 AYNNIRDILQRVAAHVD---DG---------PCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELA 191 (426)
Q Consensus 124 a~~~v~~iL~~iaa~~~---~~---------~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia 191 (426)
..+.++.+|+.-..++. +- +++..++ .|...-++...|.-..-+..++.|...+.+..| .+++.+.
T Consensus 164 ~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~~~t~~ 241 (341)
T PRK12439 164 LATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GNPETFA 241 (341)
T ss_pred HHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CCccccc
Confidence 66777777765443320 00 1222222 122222333444544445577778888887766 5666554
Q ss_pred HHHHHhcc-cchh--hH--HHHHh--HHhhhccCCCCCCcchhhHHHhhcccchHHH----HHHHHHHcCCChhHHHHHH
Q 043238 192 EIFDEWNK-GELE--SF--LVQIT--ADIFKVKDEYGEGELVDKILDKTGMKGTRKW----TIQQAAELLVAALTIAASL 260 (426)
Q Consensus 192 ~if~~W~~-G~i~--S~--L~ei~--~~il~~~~~~~~~~lld~i~kd~~qkgtg~w----~v~~A~~~gvp~P~isaAl 260 (426)
.. .+ |.++ ++ ..+.+ +..+. .+..++.+.+...+.-.|.- +.+.+.++++.+|.+.+..
T Consensus 242 gl----~G~GDl~~Tc~s~~sRN~~~G~~l~------~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~ 311 (341)
T PRK12439 242 GL----AGMGDLIVTCTSQRSRNRHVGEQLG------AGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVD 311 (341)
T ss_pred cc----chhhhhhhhccCCCCccHHHHHHHH------CCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 33 11 2222 10 01111 11122 12345566555544433433 6778889999999987665
Q ss_pred H
Q 043238 261 D 261 (426)
Q Consensus 261 ~ 261 (426)
.
T Consensus 312 ~ 312 (341)
T PRK12439 312 A 312 (341)
T ss_pred H
Confidence 4
No 69
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.70 E-value=2.3e-07 Score=94.47 Aligned_cols=248 Identities=11% Similarity=-0.021 Sum_probs=141.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC-------CeEEEEeCCcc-----chHHHHHhccccC------CCCcccccCCCC--
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG-------FQISVYNRTTS-----KVDETLDRAHRED------RPLHSQGLRPLH-- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G-------~~V~vynr~~~-----~~~~l~~~~~~~~------~~~~~~~~~~~~-- 65 (426)
.++|+|||.|.||++||..|+++| ++|.+|.|+++ .++.+.+.+.+.. ++.++....+++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 358999999999999999999998 89999999987 3666655443322 244566566653
Q ss_pred ---CC-cE-ecCCchHHHHHhhcCC--C------------ccccchh--hh-----hhccccCC--CCCh----hhhhcC
Q 043238 66 ---PT-PQ-IHHHRPLGETSGTSTP--S------------AVSMKPV--RR-----VCFISAWG--SPGA----RKARHG 113 (426)
Q Consensus 66 ---~~-vI-v~~g~~vd~vl~~l~p--~------------s~~~~t~--rr-----~~~v~~pV--sGg~----~gA~~G 113 (426)
.+ +| ..+.+.+++++++|.+ . .+.+++. .+ -..++.|+ ..|| +-++.-
T Consensus 91 v~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva~~~ 170 (365)
T PTZ00345 91 VEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVANDVAREE 170 (365)
T ss_pred HhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHHHHcCC
Confidence 33 33 4444668999988877 3 2222332 22 22234443 3565 455556
Q ss_pred C--eEeecCCHHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043238 114 P--SLMPGGSFEAYNNIRDILQRVAAHV---DDG---------PCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVL 179 (426)
Q Consensus 114 ~--slm~GG~~~a~~~v~~iL~~iaa~~---~~~---------~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll 179 (426)
| ..+.+-|.+..+.++.+|..=-.++ ++- ++|+-++ .|...-++.-.|+-.+-+..+++|...+.
T Consensus 171 pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa-~Gi~dGl~~G~N~kaalitrgl~Em~~l~ 249 (365)
T PTZ00345 171 FSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALA-AGFCDGLGLGTNTKSAIIRIGLEEMKLFG 249 (365)
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHH-HHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 6 4445567777777888886433221 111 1222221 11112233446777777778888888888
Q ss_pred HHhC-CCCHHHHHHHHHHhcc-cchh--hHHHHHh--HHhhhccCCCCCCcchhhHHHhh--cccchHHH----HHHHHH
Q 043238 180 KHVG-GVSNAELAEIFDEWNK-GELE--SFLVQIT--ADIFKVKDEYGEGELVDKILDKT--GMKGTRKW----TIQQAA 247 (426)
Q Consensus 180 ~~~g-~ld~~~ia~if~~W~~-G~i~--S~L~ei~--~~il~~~~~~~~~~lld~i~kd~--~qkgtg~w----~v~~A~ 247 (426)
+..| +-+++++..+ .+ |.+. ++-.+.+ +..+.+.. +...++.+.+.+ .+.-.|.. +.+.+.
T Consensus 250 ~a~g~~~~~~T~~gl----aG~GDLi~Tc~sSRN~~~G~~l~~g~---~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~ 322 (365)
T PTZ00345 250 KIFFPNVMDETFFES----CGLADLITTCLGGRNVRCAAEFAKRN---GKKSWEEIEAELLNGQKLQGTVTLKEVYEVLE 322 (365)
T ss_pred HHhCCCCCccchhcc----chHhHhhhcccCCCcHHHHHHHhccC---CCCCHHHHHHHhhCCcEechHHHHHHHHHHHH
Confidence 8865 2466665443 11 3332 1111111 12222110 112455555554 34334444 557888
Q ss_pred HcCC--ChhHHHHHHH
Q 043238 248 ELLV--AALTIAASLD 261 (426)
Q Consensus 248 ~~gv--p~P~isaAl~ 261 (426)
++++ .+|.+.+...
T Consensus 323 ~~~i~~~~Pi~~~vy~ 338 (365)
T PTZ00345 323 SHDLKKEFPLFTVTYK 338 (365)
T ss_pred HcCCCCCCCHHHHHHH
Confidence 9999 8998876543
No 70
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.68 E-value=3.7e-07 Score=90.20 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=37.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
|+|+|||.|.||..+|..|+++|++|++|+| +++.+.+.+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g 42 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERG 42 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCC
Confidence 4799999999999999999999999999999 88888776644
No 71
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.63 E-value=7e-07 Score=86.90 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=105.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC----CeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-----CCcE---ecCC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG----FQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-----PTPQ---IHHH 73 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G----~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~vI---v~~g 73 (426)
+++|||||.|+||++|+..|.++| .+|.+.||++++.+.+.+..... .+.+.. .++| |+|
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~-------~~~~~~~~~~~advv~LavKP- 72 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV-------TTTDNQEAVEEADVVFLAVKP- 72 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCc-------ccCcHHHHHhhCCEEEEEeCh-
Confidence 468999999999999999999999 69999999999998777654221 122221 3444 777
Q ss_pred chHHHHHhhcCCC-------ccccchhhh--hhcc-ccCCCC----ChhhhhcCCeEeec---CCHHHHHHHHHHHHHhh
Q 043238 74 RPLGETSGTSTPS-------AVSMKPVRR--VCFI-SAWGSP----GARKARHGPSLMPG---GSFEAYNNIRDILQRVA 136 (426)
Q Consensus 74 ~~vd~vl~~l~p~-------s~~~~t~rr--~~~v-~~pVsG----g~~gA~~G~slm~G---G~~~a~~~v~~iL~~ia 136 (426)
+.+.+|+..|++. |+....... -+++ +.+|.. .+.-...|.+.+.. .+++..+.+..||+.+|
T Consensus 73 q~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G 152 (266)
T COG0345 73 QDLEEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVG 152 (266)
T ss_pred HhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcC
Confidence 4578899998852 322222211 3344 355443 22334445533333 36788889999999999
Q ss_pred cccCCCCcEEEeCCCchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 137 AHVDDGPCITYIGEGGSGNFVKMV--HNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 137 a~~~~~~~v~~vG~~Gag~~vKmv--~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
.+.+|.+.---.+.-+. --++.+-.+.++.++- .+.| |+.++..++
T Consensus 153 -------~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~ag---v~~G-l~~~~A~~l 200 (266)
T COG0345 153 -------KVVEVEESLMDAVTALSGSGPAYVFLFIEALADAG---VRLG-LPREEAREL 200 (266)
T ss_pred -------CeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHH---HHcC-CCHHHHHHH
Confidence 67777752111111111 1344444555554442 2344 999988777
No 72
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.63 E-value=3.3e-08 Score=98.15 Aligned_cols=51 Identities=29% Similarity=0.376 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHcCCchhhhHhhhhhHhhhccCCCc-hHHHHHhhhhcccccccc
Q 043238 338 AWRRVVGLAISAGISTPGMCASLSYFDTYRRARLP-ANLVQAQRDLFGAHAYER 390 (426)
Q Consensus 338 ~wr~vv~~~~~~~~~~p~~saal~y~~~~~~~~l~-~nliqaqrD~fgah~~~r 390 (426)
.| ++..|.+.|+|+|.+++++.|+.....+++| .|++||||||||+|+|+.
T Consensus 247 ~l--~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~~~~~ 298 (299)
T PRK12490 247 RW--TVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGHAVKT 298 (299)
T ss_pred HH--HHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCCCCCC
Confidence 56 8999999999999999999999999999999 999999999999999974
No 73
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.59 E-value=6.1e-07 Score=90.46 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=120.8
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcccc---CC---------CCcccccCCCC----CC
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRE---DR---------PLHSQGLRPLH----PT 67 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~---~~---------~~~~~~~~~~~----~~ 67 (426)
.++++|||||||.+|-++|..++++|++|.+||.++.+++.+....... .+ ..+++...+.+ ++
T Consensus 7 ~~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d 86 (436)
T COG0677 7 NMSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECD 86 (436)
T ss_pred CCceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCC
Confidence 3457999999999999999999999999999999999988764321100 00 01334444433 33
Q ss_pred cE---ecCC---------chH----HHHHhhcCCC-------ccccchhhh-h----------hc-cccCCCCChhhhhc
Q 043238 68 PQ---IHHH---------RPL----GETSGTSTPS-------AVSMKPVRR-V----------CF-ISAWGSPGARKARH 112 (426)
Q Consensus 68 vI---v~~g---------~~v----d~vl~~l~p~-------s~~~~t~rr-~----------~~-v~~pVsGg~~gA~~ 112 (426)
++ ||.. ..| +.+-..|+++ |.+|.|... + .| .|-.+.=.|+...-
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~P 166 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCC
Confidence 22 5431 123 3333455655 888888776 1 11 12111112222222
Q ss_pred C---------CeEeecCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043238 113 G---------PSLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVG 183 (426)
Q Consensus 113 G---------~slm~GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g 183 (426)
| |-+.-|=+++.-+.+..+.+.+- ..+..+-..-.+.++|+..|.+.-..+++.-|---+..+.|
T Consensus 167 G~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv------~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~G 240 (436)
T COG0677 167 GNVLKELVNNPKVIGGVTPKCAELAAALYKTIV------EGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMG 240 (436)
T ss_pred CchhhhhhcCCceeecCCHHHHHHHHHHHHHhe------EEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhC
Confidence 2 22333446677788888889888 45667777888999999999999999999999888888777
Q ss_pred CCCHHHHHHH
Q 043238 184 GVSNAELAEI 193 (426)
Q Consensus 184 ~ld~~~ia~i 193 (426)
+|.-++.+.
T Consensus 241 -IdvwevIea 249 (436)
T COG0677 241 -IDVWEVIEA 249 (436)
T ss_pred -CcHHHHHHH
Confidence 998777666
No 74
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.58 E-value=2e-06 Score=85.85 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=37.3
Q ss_pred ccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 3 ASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 3 ~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
+++.|+|+|||+|.||+.+|..|+++|++|++|.|++ .+.+.+.+
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g 46 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENG 46 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCC
Confidence 3455789999999999999999999999999999986 34454443
No 75
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.56 E-value=8e-07 Score=88.92 Aligned_cols=151 Identities=11% Similarity=0.103 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCccch-------HH-----------HHHhccccC-----CCCcccccCC--C----C--
Q 043238 17 MGQKLALNVPEKGFQISVYNRTTSKV-------DE-----------TLDRAHRED-----RPLHSQGLRP--L----H-- 65 (426)
Q Consensus 17 MG~~lA~nL~~~G~~V~vynr~~~~~-------~~-----------l~~~~~~~~-----~~~~~~~~~~--~----~-- 65 (426)
||..||..++.+|++|.+||++++.. +. +.+.+.-.. .-.+++...+ + +
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 89999999999999999999999531 11 111111000 0012333322 1 1
Q ss_pred CCcE--ecCCchHHHHH-h----hcCCC----c---------cccchhh--h---hhccccC-------CCCChhhhhcC
Q 043238 66 PTPQ--IHHHRPLGETS-G----TSTPS----A---------VSMKPVR--R---VCFISAW-------GSPGARKARHG 113 (426)
Q Consensus 66 ~~vI--v~~g~~vd~vl-~----~l~p~----s---------~~~~t~r--r---~~~v~~p-------VsGg~~gA~~G 113 (426)
+.|| |+....++..+ . .+.|. | +...+.+ | .||++.| |++|+
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~------ 154 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD------ 154 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC------
Confidence 3344 77776665443 2 23443 0 1111111 2 8999999 88876
Q ss_pred CeEeecCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 114 PSLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 114 ~slm~GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+++++++++++++++.++ +.++++|+.+ |. .+....+..++|++.++++++ ++++++-++
T Consensus 155 -----~t~~e~~~~~~~ll~~lG------k~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~-~~~e~iD~a 214 (314)
T PRK08269 155 -----ATDPAVVDRLAALLERIG------KVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGV-ASAEDIDKA 214 (314)
T ss_pred -----CCCHHHHHHHHHHHHHcC------CcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 679999999999999999 7889999754 43 233456678899999999877 999999888
No 76
>PLN02256 arogenate dehydrogenase
Probab=98.46 E-value=9.2e-06 Score=80.97 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=84.4
Q ss_pred ccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCccc-cc-CCCCCCcE--ecCCchHHH
Q 043238 3 ASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQ-GL-RPLHPTPQ--IHHHRPLGE 78 (426)
Q Consensus 3 ~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~vI--v~~g~~vd~ 78 (426)
+...++|||||+|.||+.+|..|.+.|++|.+||+++.. +...+.+.... .... .. .+. +.+| +|+. .+.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~--~~~~e~~~~~a-DvVilavp~~-~~~~ 107 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFF--RDPDDFCEEHP-DVVLLCTSIL-STEA 107 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeee--CCHHHHhhCCC-CEEEEecCHH-HHHH
Confidence 345678999999999999999999999999999999742 22222222110 0110 11 111 2333 6654 5677
Q ss_pred HHhhc-CC----Cccccc-------h---hhh-----hhccc-cCCCCChhh--hhcCCeEeec--------CCHHHHHH
Q 043238 79 TSGTS-TP----SAVSMK-------P---VRR-----VCFIS-AWGSPGARK--ARHGPSLMPG--------GSFEAYNN 127 (426)
Q Consensus 79 vl~~l-~p----~s~~~~-------t---~rr-----~~~v~-~pVsGg~~g--A~~G~slm~G--------G~~~a~~~ 127 (426)
+++++ .+ .++.-| . .++ ..|++ +|+.|.+.+ ...+..++.. .++++++.
T Consensus 108 vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 108 VLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred HHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 77776 22 211111 1 111 35775 688876643 3344444333 26788999
Q ss_pred HHHHHHHhhcccCCCCcEEEeCCCc
Q 043238 128 IRDILQRVAAHVDDGPCITYIGEGG 152 (426)
Q Consensus 128 v~~iL~~iaa~~~~~~~v~~vG~~G 152 (426)
++.+++.+| .+++.+-+.-
T Consensus 188 l~~l~~~lG------a~v~~~~~ee 206 (304)
T PLN02256 188 FLDIFEEEG------CRMVEMSCEE 206 (304)
T ss_pred HHHHHHHCC------CEEEEeCHHH
Confidence 999999999 4677776643
No 77
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.42 E-value=4.3e-06 Score=83.90 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=94.4
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh-ccccCCCCcccccCCCCCCcE---ecCCchHHHHH-
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR-AHREDRPLHSQGLRPLHPTPQ---IHHHRPLGETS- 80 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~vI---v~~g~~vd~vl- 80 (426)
.++|||||+|.||.++|+||.+.|++|.+++|+.++..+..+. +.... +.-..+.. .++| ||+.. ..+++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~--s~~eaa~~--ADVVvLaVPd~~-~~~V~~ 91 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL--TVAEAAKW--ADVIMILLPDEV-QAEVYE 91 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC--CHHHHHhc--CCEEEEcCCHHH-HHHHHH
Confidence 4689999999999999999999999999999887665444332 22110 00001111 3444 66554 35565
Q ss_pred hhc----CCC---ccccchhhh---------hhcc-ccCCCCCh-----hhhhcCC-eEe-ecCC--HHHHHHHHHHHHH
Q 043238 81 GTS----TPS---AVSMKPVRR---------VCFI-SAWGSPGA-----RKARHGP-SLM-PGGS--FEAYNNIRDILQR 134 (426)
Q Consensus 81 ~~l----~p~---s~~~~t~rr---------~~~v-~~pVsGg~-----~gA~~G~-slm-~GG~--~~a~~~v~~iL~~ 134 (426)
+++ +|+ ++..-..-. +..+ =||=.-|. --...|- ++. +..| .++.+.+..+++.
T Consensus 92 ~~I~~~Lk~g~iL~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~a 171 (330)
T PRK05479 92 EEIEPNLKEGAALAFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKG 171 (330)
T ss_pred HHHHhcCCCCCEEEECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 434 333 110000000 1111 12332222 0123455 566 6777 8999999999999
Q ss_pred hhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 043238 135 VAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAEL 190 (426)
Q Consensus 135 iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~i 190 (426)
+|+..-|-=..++--+.-+.-|=. .--+.-+...++..+|.++...| .+++..
T Consensus 172 iG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 172 IGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred cCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 995421100001111111111111 11222345567777888888877 888754
No 78
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.42 E-value=7.5e-07 Score=90.07 Aligned_cols=243 Identities=11% Similarity=-0.011 Sum_probs=133.1
Q ss_pred cEEEEchhHHHHHHHHHHHhCC--------CeEEEEeC-----CccchHHHHHhccccC------CCCcccccCCCC---
Q 043238 8 RIGLAGLAVMGQKLALNVPEKG--------FQISVYNR-----TTSKVDETLDRAHRED------RPLHSQGLRPLH--- 65 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G--------~~V~vynr-----~~~~~~~l~~~~~~~~------~~~~~~~~~~~~--- 65 (426)
||+|||.|.||++||..|+++| ++|.+|.| +++-.+.+.+...+.. ++.+++...+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 4444555544332221 133455555654
Q ss_pred --CCcE--ecCCchHHHHHhhcCCC------------ccccc--hhhh-----hhccccC--CCCCh----hhhhcCC-e
Q 043238 66 --PTPQ--IHHHRPLGETSGTSTPS------------AVSMK--PVRR-----VCFISAW--GSPGA----RKARHGP-S 115 (426)
Q Consensus 66 --~~vI--v~~g~~vd~vl~~l~p~------------s~~~~--t~rr-----~~~v~~p--VsGg~----~gA~~G~-s 115 (426)
.++| ..+.+.++++++++.+. -+.++ +.++ -..++.+ +..|| +-++.-| .
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt~ 160 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFSE 160 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCce
Confidence 3333 45556788888777653 22333 4443 2223433 34555 4566666 4
Q ss_pred Eee-cCC----HHHHHHHHHHHHHhhccc---CCC---------CcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043238 116 LMP-GGS----FEAYNNIRDILQRVAAHV---DDG---------PCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDV 178 (426)
Q Consensus 116 lm~-GG~----~~a~~~v~~iL~~iaa~~---~~~---------~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~L 178 (426)
+.+ +-+ .+..+.++.+|..=-.++ ++- ++|+-++ .|...-+.+-.|+-.+-+..++.|...+
T Consensus 161 ~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa-~Gi~~Gl~~g~N~~aalitrgl~Em~~l 239 (342)
T TIGR03376 161 TTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIA-AGFVDGLGWGDNAKAAVMRRGLLEMIKF 239 (342)
T ss_pred EEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 444 455 677777888876422221 010 1222111 1111222333577667777888888888
Q ss_pred HHHhCCCCHH--HHHHHHHHhcc-cchh--hHHHHHh--HHhhhccCCCCCCcchhhHHHh--hcccchHHH----HHHH
Q 043238 179 LKHVGGVSNA--ELAEIFDEWNK-GELE--SFLVQIT--ADIFKVKDEYGEGELVDKILDK--TGMKGTRKW----TIQQ 245 (426)
Q Consensus 179 l~~~g~ld~~--~ia~if~~W~~-G~i~--S~L~ei~--~~il~~~~~~~~~~lld~i~kd--~~qkgtg~w----~v~~ 245 (426)
.+..|+ +++ .+... .+ |.+. ++-.+.+ +..+.++ +..++.+.+. ..+.-.|.. +...
T Consensus 240 ~~~~g~-~~~~~T~~gl----~G~GDL~~Tc~ssRN~~~G~~l~~~-----g~~~~~~~~~~~~~~~vEG~~t~~~~~~l 309 (342)
T TIGR03376 240 ARMFFP-TGEVTFTFES----CGVADLITTCLGGRNFKVGRAFAKT-----GKSLEELEKELLNGQSLQGVATAKEVHEL 309 (342)
T ss_pred HHHhCC-CCCCCccccc----chhhhhhheeecCccHHHHHHHHhc-----CCCHHHHHHhhcCCcEEeeHHHHHHHHHH
Confidence 888663 333 33222 11 2222 1111111 1222221 2345666655 344444444 5566
Q ss_pred HHHcCCC--hhHHHHHHH
Q 043238 246 AAELLVA--ALTIAASLD 261 (426)
Q Consensus 246 A~~~gvp--~P~isaAl~ 261 (426)
+.+.++. +|.+.+...
T Consensus 310 ~~~~~i~~~~Pi~~~vy~ 327 (342)
T TIGR03376 310 LKNKNKDDEFPLFEAVYQ 327 (342)
T ss_pred HHHcCCCcCCCHHHHHHH
Confidence 8889999 999876544
No 79
>PLN02712 arogenate dehydrogenase
Probab=98.40 E-value=8.4e-07 Score=97.10 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=82.7
Q ss_pred ccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHH
Q 043238 3 ASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETS 80 (426)
Q Consensus 3 ~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl 80 (426)
+.+.++|||||+|.||..+|++|.+.|++|.+|||+.+. +...+.+.... .+.-..+....+.+| +|+ ..+.+++
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~-~~~~el~~~~aDvVILavP~-~~~~~vi 442 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYF-SDADDLCEEHPEVILLCTSI-LSTEKVL 442 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEe-CCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence 345679999999999999999999999999999999653 33333332110 000001111002333 665 4566666
Q ss_pred hhc-----CCCccccc------hhhh---------hhcc-ccCCCCChhhhhcCC---e-----EeecCCHHHHHHHH--
Q 043238 81 GTS-----TPSAVSMK------PVRR---------VCFI-SAWGSPGARKARHGP---S-----LMPGGSFEAYNNIR-- 129 (426)
Q Consensus 81 ~~l-----~p~s~~~~------t~rr---------~~~v-~~pVsGg~~gA~~G~---s-----lm~GG~~~a~~~v~-- 129 (426)
+++ +++++.-| ...+ ..|+ ++|+.|.+.+ ..|. . .+++++.+..++++
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l 521 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSF 521 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHH
Confidence 543 34411111 1111 4688 7899998754 2331 1 44567776666665
Q ss_pred -HHHHHhhcccCCCCcEEEeCCC
Q 043238 130 -DILQRVAAHVDDGPCITYIGEG 151 (426)
Q Consensus 130 -~iL~~iaa~~~~~~~v~~vG~~ 151 (426)
.+++.++ .+++.+-+.
T Consensus 522 ~~l~~~lG------a~vv~ms~e 538 (667)
T PLN02712 522 LDIFAREG------CRMVEMSCA 538 (667)
T ss_pred HHHHHHcC------CEEEEeCHH
Confidence 7777777 467777653
No 80
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.39 E-value=4.7e-06 Score=79.83 Aligned_cols=165 Identities=15% Similarity=0.082 Sum_probs=94.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC---e-EEEEeCC-ccchHHHHHhccccCCCCcccccCCCC------CCcE--ecCC
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF---Q-ISVYNRT-TSKVDETLDRAHREDRPLHSQGLRPLH------PTPQ--IHHH 73 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~---~-V~vynr~-~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~vI--v~~g 73 (426)
++|||||+|.||.+++.+|+++|+ + |.+++|+ +++.+.+.+... +..+.+.+ +.+| +|+
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~DiViiavp~- 76 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN-------VSTTTDWKQHVTSVDTIVLAMPP- 76 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC-------cEEeCChHHHHhcCCEEEEecCH-
Confidence 579999999999999999998873 3 7789884 677777765421 11122221 3334 555
Q ss_pred chHHHHHhhcCCC-----------ccccchhhhhhccc--------cCCCCChhhhhcCC-eEe--ecCCHHHHHHHHHH
Q 043238 74 RPLGETSGTSTPS-----------AVSMKPVRRVCFIS--------AWGSPGARKARHGP-SLM--PGGSFEAYNNIRDI 131 (426)
Q Consensus 74 ~~vd~vl~~l~p~-----------s~~~~t~rr~~~v~--------~pVsGg~~gA~~G~-slm--~GG~~~a~~~v~~i 131 (426)
....++++++.+. .+..++.+. .++ +|=. ......|. .+. ..++++..+.++.+
T Consensus 77 ~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~--~~~~~~~v~r~~Pn~--a~~v~~g~~~~~~~~~~~~~~~~~v~~l 152 (245)
T PRK07634 77 SAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE--RLPKGTPVAWIMPNT--AAEIGKSISLYTMGQSVNETHKETLQLI 152 (245)
T ss_pred HHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH--HcCCCCeEEEECCcH--HHHHhcCCeEEeeCCCCCHHHHHHHHHH
Confidence 4567888776542 111111111 111 2211 12233343 222 34688999999999
Q ss_pred HHHhhcccCCCCcEEEeCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 132 LQRVAAHVDDGPCITYIGEGG--SGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 132 L~~iaa~~~~~~~v~~vG~~G--ag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
|+.++ ++.++-+.- ..+.+=-..-++.+..+.++.++ +.+.| ++.++-.++.
T Consensus 153 f~~~G-------~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~ 206 (245)
T PRK07634 153 LKGIG-------TSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLV 206 (245)
T ss_pred HHhCC-------CEEEECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHH
Confidence 99999 344565421 11112222233445555555555 34444 9999887773
No 81
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=3.4e-05 Score=78.22 Aligned_cols=230 Identities=16% Similarity=0.136 Sum_probs=143.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccc---cCC---------CCcccccCCCC-----CCcE
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHR---EDR---------PLHSQGLRPLH-----PTPQ 69 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~---~~~---------~~~~~~~~~~~-----~~vI 69 (426)
|+|.|||.|..|...+..|++.||+|...|.+++|++.+.+.... +++ ..++....+.+ .+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 689999999999999999999999999999999998876432110 000 01234444433 2333
Q ss_pred ---ecC-----Cc----hHHHHHhhcCCC-----------ccccchhhh----hhcc----ccCCCCChhhhhcC-----
Q 043238 70 ---IHH-----HR----PLGETSGTSTPS-----------AVSMKPVRR----VCFI----SAWGSPGARKARHG----- 113 (426)
Q Consensus 70 ---v~~-----g~----~vd~vl~~l~p~-----------s~~~~t~rr----~~~v----~~pVsGg~~gA~~G----- 113 (426)
|++ |. .|.++++.+.+. |+-+.|.++ +.-- |-.|.-.|+=-|.|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D 160 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYD 160 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhh
Confidence 322 21 245555444332 666666655 1111 12244444433333
Q ss_pred ---C-eEeecCCHH-HHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 043238 114 ---P-SLMPGGSFE-AYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNA 188 (426)
Q Consensus 114 ---~-slm~GG~~~-a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~ 188 (426)
| -+.+|...+ +.+.++.+++.+..+ + ..+.+.+ .-.+.++|...|++.+..+.-+-|.-.++++.| +|..
T Consensus 161 ~~~PdRIViG~~~~~a~~~~~ely~~~~~~--~-~p~l~t~-~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g-~D~~ 235 (414)
T COG1004 161 FLYPDRIVIGVRSERAAAVLRELYAPFLRQ--D-VPILFTD-LREAELIKYAANAFLATKISFINEIANICEKVG-ADVK 235 (414)
T ss_pred ccCCCeEEEccCChhHHHHHHHHHhhhhhc--C-CCEEEec-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHH
Confidence 2 567887665 577888888776531 1 2344444 567899999999999999999999999999988 9998
Q ss_pred HHHHHHHHhcccchhhHHHHHhHHhhhc-cCCCCCCcchhhHHHhhcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 189 ELAEIFDEWNKGELESFLVQITADIFKV-KDEYGEGELVDKILDKTGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 189 ~ia~if~~W~~G~i~S~L~ei~~~il~~-~~~~~~~~lld~i~kd~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
++++-. . +.. +|- .-|.+ .-.|.+..+= ||.. -.+..|.+.|.+.+++.+.+.
T Consensus 236 ~V~~gI---G---lD~---RIG-~~fl~aG~GyGGsCfP----KD~~------AL~~~a~~~~~~~~ll~avv~ 289 (414)
T COG1004 236 QVAEGI---G---LDP---RIG-NHFLNAGFGYGGSCFP----KDTK------ALIANAEELGYDPNLLEAVVE 289 (414)
T ss_pred HHHHHc---C---CCc---hhh-HhhCCCCCCCCCcCCc----HhHH------HHHHHHHhcCCchHHHHHHHH
Confidence 887662 1 111 111 22221 1223333331 3333 256788999999999888775
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.36 E-value=4.4e-07 Score=81.61 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=59.3
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCC------CCcccccCCCC-----CCcE--ecCCc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDR------PLHSQGLRPLH-----PTPQ--IHHHR 74 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~------~~~~~~~~~~~-----~~vI--v~~g~ 74 (426)
||+|||.|+||.++|.-|+++|++|++|.|+++.++.+.+.+....+ +.++....+++ .++| ..+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 69999999999999999999999999999999999999876543221 23444555553 3333 34446
Q ss_pred hHHHHHhhcCCC
Q 043238 75 PLGETSGTSTPS 86 (426)
Q Consensus 75 ~vd~vl~~l~p~ 86 (426)
..++++++|.|+
T Consensus 81 ~~~~~~~~l~~~ 92 (157)
T PF01210_consen 81 AHREVLEQLAPY 92 (157)
T ss_dssp GHHHHHHHHTTT
T ss_pred HHHHHHHHHhhc
Confidence 689999998885
No 83
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.33 E-value=3.7e-06 Score=93.33 Aligned_cols=137 Identities=12% Similarity=0.154 Sum_probs=85.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC--CeEEEEeCCccchHHHHHhccccCCCCcc-cccCCCCCCcE--ecCCchHHHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG--FQISVYNRTTSKVDETLDRAHREDRPLHS-QGLRPLHPTPQ--IHHHRPLGETS 80 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G--~~V~vynr~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~vI--v~~g~~vd~vl 80 (426)
..+|||||+|.||.+|+..|.++| ++|.+|||++++.+.+.+.+......... ...... +.+| +|+ +.+.+++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~a-DvVilavp~-~~~~~vl 80 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGA-DVIVLAVPV-LAMEKVL 80 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCC-CEEEECCCH-HHHHHHH
Confidence 468999999999999999999999 48999999999988776655321000000 001111 3334 665 3577777
Q ss_pred hhcCCC-----------ccccchhhh---------hhcc-ccCCCCChh-hh--------hcCC-eEee--cCCHHHHHH
Q 043238 81 GTSTPS-----------AVSMKPVRR---------VCFI-SAWGSPGAR-KA--------RHGP-SLMP--GGSFEAYNN 127 (426)
Q Consensus 81 ~~l~p~-----------s~~~~t~rr---------~~~v-~~pVsGg~~-gA--------~~G~-slm~--GG~~~a~~~ 127 (426)
+.+.+. +......+. ++|+ +.|++|++. |. ..++ .+.+ +++++.++.
T Consensus 81 ~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 160 (735)
T PRK14806 81 ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALAR 160 (735)
T ss_pred HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHH
Confidence 766542 222111111 3455 579987763 21 1222 2333 368889999
Q ss_pred HHHHHHHhhcccCCCCcEEEeCC
Q 043238 128 IRDILQRVAAHVDDGPCITYIGE 150 (426)
Q Consensus 128 v~~iL~~iaa~~~~~~~v~~vG~ 150 (426)
++++|+.++ .++.++.+
T Consensus 161 ~~~l~~~~G------~~~~~~~~ 177 (735)
T PRK14806 161 VDRLWRAVG------ADVLHMDV 177 (735)
T ss_pred HHHHHHHcC------CEEEEcCH
Confidence 999999999 45666654
No 84
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.31 E-value=3.4e-06 Score=79.04 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=75.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh-ccccCCCCcccccCCC---CCCcEecC---CchHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR-AHREDRPLHSQGLRPL---HPTPQIHH---HRPLGET 79 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~-~~~~~~~~~~~~~~~~---~~~vIv~~---g~~vd~v 79 (426)
++|+|+|+|.||+.+|++|.+.|++|.++|+++++.+++.+. +... +. ..++ +.++++|. +....+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~-~~~l~~~~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-----VA-PEEIYSVDADVFAPCALGGVINDDT 102 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-----Ec-chhhccccCCEEEecccccccCHHH
Confidence 579999999999999999999999999999999988888765 3221 00 0111 02333333 3344566
Q ss_pred HhhcCCC-----ccccch-hh-------h-hhccc-cCC-CCChhhhhcCCeEeecCCH-HHHHHHHHHHHHhh
Q 043238 80 SGTSTPS-----AVSMKP-VR-------R-VCFIS-AWG-SPGARKARHGPSLMPGGSF-EAYNNIRDILQRVA 136 (426)
Q Consensus 80 l~~l~p~-----s~~~~t-~r-------r-~~~v~-~pV-sGg~~gA~~G~slm~GG~~-~a~~~v~~iL~~ia 136 (426)
+++|... .+.|-+ .+ + +.|++ ... +|| ...+-..|+|+++ ++.++++++++.+.
T Consensus 103 ~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaGG---v~~~~~e~~~~~~~~~~~~~~~~~~~~~ 173 (200)
T cd01075 103 IPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGG---LINVADELYGGNEARVLAKVEAIYDTLL 173 (200)
T ss_pred HHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCcC---ceeehhHHhCCcHHHHHHHHHHHHHHHH
Confidence 6776654 223222 11 1 77775 666 553 3444466777664 55556655544444
No 85
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.29 E-value=1.4e-05 Score=79.33 Aligned_cols=128 Identities=9% Similarity=0.034 Sum_probs=77.9
Q ss_pred CcEEEEchhHH--------------------HHHHHHHHHhCCCeEEEEeCCccchH-----HHHHhccccCCCCccccc
Q 043238 7 SRIGLAGLAVM--------------------GQKLALNVPEKGFQISVYNRTTSKVD-----ETLDRAHREDRPLHSQGL 61 (426)
Q Consensus 7 ~~IG~IGlG~M--------------------G~~lA~nL~~~G~~V~vynr~~~~~~-----~l~~~~~~~~~~~~~~~~ 61 (426)
|||.|.|.|+- |++||+||+++||+|.||||++++++ .+.+.|+... ++....+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~A-aS~aEAA 79 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVV-SDDKEAA 79 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeec-CCHHHHH
Confidence 57888888864 88999999999999999999987653 4666654331 1111222
Q ss_pred CCCCCCcE--ecCCchHHHHHh----hcCCC-------ccccchhhh-----h--hccccCCCCChhhhhcCC----eEe
Q 043238 62 RPLHPTPQ--IHHHRPLGETSG----TSTPS-------AVSMKPVRR-----V--CFISAWGSPGARKARHGP----SLM 117 (426)
Q Consensus 62 ~~~~~~vI--v~~g~~vd~vl~----~l~p~-------s~~~~t~rr-----~--~~v~~pVsGg~~gA~~G~----slm 117 (426)
.+. +.+| ||+++++++|+. .+.++ |+.|++..+ . .==|.+||-=.+++--|. -..
T Consensus 80 a~A-DVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~ 158 (341)
T TIGR01724 80 KHG-EIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYV 158 (341)
T ss_pred hCC-CEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceee
Confidence 221 3344 899998888854 44444 666666554 1 112444443222222211 122
Q ss_pred ec---------CCHHHHHHHHHHHHHhh
Q 043238 118 PG---------GSFEAYNNIRDILQRVA 136 (426)
Q Consensus 118 ~G---------G~~~a~~~v~~iL~~ia 136 (426)
.+ -++|..+++..+.++..
T Consensus 159 ~~~~~~~~~~~A~ee~i~~~~el~~~~~ 186 (341)
T TIGR01724 159 IGGKPTAGKEMATEEQISKCVELAKSTG 186 (341)
T ss_pred eccccccccccCCHHHHHHHHHHHHHhC
Confidence 22 26788888888888887
No 86
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.27 E-value=5.4e-06 Score=81.49 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=91.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCC----CeEEEEeCCc-cchHHHHHhccccCCCCcccccCCCC-----CC-cE--ecCC
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKG----FQISVYNRTT-SKVDETLDRAHREDRPLHSQGLRPLH-----PT-PQ--IHHH 73 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G----~~V~vynr~~-~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~-vI--v~~g 73 (426)
++|+|||+|.||.+|+.+|.++| ++|.+|+|+. ++.+.+.+.... +..+.+.. .+ +| +|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~------~~~~~~~~e~~~~aDvVilavpp- 74 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPT------VELADNEAEIFTKCDHSFICVPP- 74 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCC------eEEeCCHHHHHhhCCEEEEecCH-
Confidence 58999999999999999999998 7999999875 445555433211 11122211 33 44 665
Q ss_pred chHHHHHhhcCCC--------ccccchhh-h-hhccc-cCCCC----ChhhhhcCCeEeecC---CHHHHHHHHHHHHHh
Q 043238 74 RPLGETSGTSTPS--------AVSMKPVR-R-VCFIS-AWGSP----GARKARHGPSLMPGG---SFEAYNNIRDILQRV 135 (426)
Q Consensus 74 ~~vd~vl~~l~p~--------s~~~~t~r-r-~~~v~-~pVsG----g~~gA~~G~slm~GG---~~~a~~~v~~iL~~i 135 (426)
+.+.++++++.|. +....... + -.+++ .+|.- .+.....|.+.+..+ +++..+.++.+|+.+
T Consensus 75 ~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~ 154 (277)
T PRK06928 75 LAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHF 154 (277)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhC
Confidence 4577888766542 11110000 1 11221 12221 123344566444332 457778899999999
Q ss_pred hcccCCCCcEEEeCC---------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 136 AAHVDDGPCITYIGE---------GGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 136 aa~~~~~~~v~~vG~---------~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
| .+.++-+ .|+| -++.+-.+.++.++- .+.+|++.++..++.
T Consensus 155 G-------~~~~v~E~~~d~~tal~gsg-------PA~~~~~~~al~~a~---~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 155 S-------HVMTIREENMDIASNLTSSS-------PGFIAAIFEEFAEAA---VRNSSLSDEEAFQFL 205 (277)
T ss_pred C-------CEEEEchhhCceeeeeecCH-------HHHHHHHHHHHHHHH---HHhCCCCHHHHHHHH
Confidence 9 3334322 2444 344444444555442 233359999887773
No 87
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.27 E-value=1.2e-06 Score=71.73 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=50.3
Q ss_pred cEEEEchhHHHHHHHHHHHhCC---CeEE-EEeCCccchHHHHHhccccCCC-CcccccCCCCCCcE---ecCCchHHHH
Q 043238 8 RIGLAGLAVMGQKLALNVPEKG---FQIS-VYNRTTSKVDETLDRAHREDRP-LHSQGLRPLHPTPQ---IHHHRPLGET 79 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G---~~V~-vynr~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~vI---v~~g~~vd~v 79 (426)
||||||.|.||++|++.|.++| ++|. +++|++++.+++.+........ ++....+. +++| ||+. .+.++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--advvilav~p~-~~~~v 77 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQE--ADVVILAVKPQ-QLPEV 77 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHH--TSEEEE-S-GG-GHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhcc--CCEEEEEECHH-HHHHH
Confidence 6999999999999999999999 9999 5599999999998765321000 01111111 3444 6664 46778
Q ss_pred Hhhc
Q 043238 80 SGTS 83 (426)
Q Consensus 80 l~~l 83 (426)
++++
T Consensus 78 ~~~i 81 (96)
T PF03807_consen 78 LSEI 81 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 88
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.26 E-value=1.6e-05 Score=78.24 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=86.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH--hccccCCCCcccccCCCC-CC-cE--ecCCchHHH
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD--RAHREDRPLHSQGLRPLH-PT-PQ--IHHHRPLGE 78 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~--~~~~~~~~~~~~~~~~~~-~~-vI--v~~g~~vd~ 78 (426)
++++|+|||+|.||+.+|+.|.++|+.|.+|+++.+....... .+.......+. ...... .+ +| ||-. ++.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~-~~~~~~~aD~VivavPi~-~~~~ 79 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAG-LAEAAAEADLVIVAVPIE-ATEE 79 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccch-hhhhcccCCEEEEeccHH-HHHH
Confidence 5679999999999999999999999999888887765433322 23211000000 011111 23 44 5554 4677
Q ss_pred HHhhcCCC----ccccch----------hhh-----hhccc-cCCCCCh--hhhhcCC--eEeecC--CHHHHHHHHHHH
Q 043238 79 TSGTSTPS----AVSMKP----------VRR-----VCFIS-AWGSPGA--RKARHGP--SLMPGG--SFEAYNNIRDIL 132 (426)
Q Consensus 79 vl~~l~p~----s~~~~t----------~rr-----~~~v~-~pVsGg~--~gA~~G~--slm~GG--~~~a~~~v~~iL 132 (426)
+++++.|. .+--|+ .+. .+|++ .|+.|.+ .+--.+. .+.++. +.+.+++++.+|
T Consensus 80 ~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~ 159 (279)
T COG0287 80 VLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLW 159 (279)
T ss_pred HHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 88877763 111111 011 25886 5999983 3333444 455664 467899999999
Q ss_pred HHhhcccCCCCcEEEeCCCc
Q 043238 133 QRVAAHVDDGPCITYIGEGG 152 (426)
Q Consensus 133 ~~iaa~~~~~~~v~~vG~~G 152 (426)
+.+++ .+.++-+.-
T Consensus 160 ~~~ga------~~v~~~~ee 173 (279)
T COG0287 160 EALGA------RLVEMDAEE 173 (279)
T ss_pred HHcCC------EEEEcChHH
Confidence 99994 577776643
No 89
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.25 E-value=1.7e-05 Score=77.27 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=93.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC----eEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF----QISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETS 80 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~----~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl 80 (426)
|+|||||+|.||++|+..|.++|. +|.+++|++++... ... .++....... +.+| +|+ ..+.+++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~-D~Vilavkp-~~~~~vl 74 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTPF---VYL----QSNEELAKTC-DIIVLAVKP-DLAGKVL 74 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCCe---EEe----CChHHHHHhC-CEEEEEeCH-HHHHHHH
Confidence 579999999999999999999872 59999998765310 000 0111111111 3344 665 4478888
Q ss_pred hhcCCC-----------ccccchhhhhhcccc--C---CCCC-hhhhhcCCeEe-ec--CCHHHHHHHHHHHHHhhcccC
Q 043238 81 GTSTPS-----------AVSMKPVRRVCFISA--W---GSPG-ARKARHGPSLM-PG--GSFEAYNNIRDILQRVAAHVD 140 (426)
Q Consensus 81 ~~l~p~-----------s~~~~t~rr~~~v~~--p---VsGg-~~gA~~G~slm-~G--G~~~a~~~v~~iL~~iaa~~~ 140 (426)
.++.|. .+..++.++ +++. . +..+ +.-...|++++ ++ -+++..+.++.+|+.++
T Consensus 75 ~~i~~~l~~~~iIS~~aGi~~~~l~~--~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G---- 148 (260)
T PTZ00431 75 LEIKPYLGSKLLISICGGLNLKTLEE--MVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACG---- 148 (260)
T ss_pred HHHHhhccCCEEEEEeCCccHHHHHH--HcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCC----
Confidence 877653 222222222 1111 1 1222 23334566433 32 25677889999999999
Q ss_pred CCCcEEEeCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 141 DGPCITYIGEGGSGNF--VKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 141 ~~~~v~~vG~~Gag~~--vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
.+.++-+.---.+ +==.--++.|..+.++.++- .+. |++.++..++.
T Consensus 149 ---~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~---v~~-Gl~~~~a~~l~ 197 (260)
T PTZ00431 149 ---IIQEIKEKDMDIATAISGCGPAYVFLFIESLIDAG---VKN-GLNRDVSKNLV 197 (260)
T ss_pred ---cEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHH---HHc-CCCHHHHHHHH
Confidence 4555543211001 11111455666666666653 234 49999988873
No 90
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.25 E-value=3.9e-06 Score=79.53 Aligned_cols=42 Identities=26% Similarity=0.407 Sum_probs=38.2
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
|+|+||| .|.||++|+..|+++|++|.+|+|++++.+.+.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~ 43 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK 43 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH
Confidence 4799997 99999999999999999999999999998877653
No 91
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.14 E-value=6.2e-05 Score=74.98 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=39.7
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+.|+|+|||.|.||+-+|-.|.+.|++|+++.|+.+.++.+.+.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~ 44 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA 44 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc
Confidence 35689999999999999999999999999999998888877654
No 92
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.07 E-value=2e-05 Score=78.21 Aligned_cols=171 Identities=13% Similarity=0.192 Sum_probs=96.6
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHH-----------HHhccccCC-----CCcccccCCC---C
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDET-----------LDRAHREDR-----PLHSQGLRPL---H 65 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l-----------~~~~~~~~~-----~~~~~~~~~~---~ 65 (426)
+.++|||||.|.||+.+|..++..|++|.+||++++.+++. .+.+....- -..++...++ +
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 45789999999999999999999889999999997654332 222211000 0122222222 1
Q ss_pred --CCcE--ecCCchHH-HHH---hhcC-CC--------cc-----ccchhh--h---hhccc----cCCCCChhhhhcCC
Q 043238 66 --PTPQ--IHHHRPLG-ETS---GTST-PS--------AV-----SMKPVR--R---VCFIS----AWGSPGARKARHGP 114 (426)
Q Consensus 66 --~~vI--v~~g~~vd-~vl---~~l~-p~--------s~-----~~~t~r--r---~~~v~----~pVsGg~~gA~~G~ 114 (426)
+-+| |+-...+. +++ +.+. |. ++ ...+.| | .||++ ||..--..|..
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~--- 158 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEK--- 158 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCC---
Confidence 3344 54443332 233 2222 32 11 112212 1 56665 22211111111
Q ss_pred eEeecCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 115 SLMPGGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 115 slm~GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
-++++++++..+.++++ +.+ .+..+-.|. +-|-+. ...+.|++.++.++. .++++|-.+
T Consensus 159 -----T~~e~~~~~~~~~~~ig------K~~-vv~~D~pGF----i~NRil---~~~~~eA~~l~~eGv-a~~e~ID~~- 217 (307)
T COG1250 159 -----TSDETVERVVEFAKKIG------KTP-VVVKDVPGF----IVNRLL---AALLNEAIRLLEEGV-ATPEEIDAA- 217 (307)
T ss_pred -----CCHHHHHHHHHHHHHcC------CCC-EeecCCCce----ehHhHH---HHHHHHHHHHHHhCC-CCHHHHHHH-
Confidence 26899999999999999 333 222222232 234433 345678999999876 899999888
Q ss_pred HHhcccc
Q 043238 195 DEWNKGE 201 (426)
Q Consensus 195 ~~W~~G~ 201 (426)
|+.|.
T Consensus 218 --~~~~~ 222 (307)
T COG1250 218 --MRQGL 222 (307)
T ss_pred --HHhcc
Confidence 66543
No 93
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.98 E-value=5.6e-05 Score=75.68 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=35.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc-cchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT-SKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~-~~~~~l~~~~ 49 (426)
.++|||||+|.||.++|++|.++|++|.++++.. ++.+.+.+.+
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G 47 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG 47 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC
Confidence 3679999999999999999999999998876654 4555555444
No 94
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.96 E-value=0.00023 Score=71.07 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=53.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCc-----ccccCCCC----CC-cE--ecCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLH-----SQGLRPLH----PT-PQ--IHHHR 74 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~----~~-vI--v~~g~ 74 (426)
|+|.|+|.|.||+-++..|+++|++|+++.|++. .+++.+.|-...-... ...+.+.+ .+ +| +++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 5899999999999999999999999999999987 7888776532110001 11111111 23 33 66665
Q ss_pred hHHHHHhhcCCC
Q 043238 75 PLGETSGTSTPS 86 (426)
Q Consensus 75 ~vd~vl~~l~p~ 86 (426)
++++++.+.|.
T Consensus 80 -~~~al~~l~~~ 90 (307)
T COG1893 80 -LEEALPSLAPL 90 (307)
T ss_pred -HHHHHHHhhhc
Confidence 78888887775
No 95
>PLN02712 arogenate dehydrogenase
Probab=97.95 E-value=3.5e-05 Score=84.50 Aligned_cols=137 Identities=10% Similarity=-0.021 Sum_probs=78.4
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCccccc-CCCCCCcE--ecCCchHHHHH
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGL-RPLHPTPQ--IHHHRPLGETS 80 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~vI--v~~g~~vd~vl 80 (426)
+..++|||||+|.||..||+.|.++|++|.+|||+..+ +...+.+.... .+.-..+ ... +.+| +|+ ..+.+++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~-~d~~e~~~~~a-DvViLavP~-~~~~~vl 125 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFF-LDPHDLCERHP-DVILLCTSI-ISTENVL 125 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEe-CCHHHHhhcCC-CEEEEcCCH-HHHHHHH
Confidence 34568999999999999999999999999999998543 33333332110 0000001 111 3333 665 4567777
Q ss_pred hhcC-----CC-------ccccchh---hh-----hhccc-cCCCCChhh--hhcCC-eEeec---CCH----HHHHHHH
Q 043238 81 GTST-----PS-------AVSMKPV---RR-----VCFIS-AWGSPGARK--ARHGP-SLMPG---GSF----EAYNNIR 129 (426)
Q Consensus 81 ~~l~-----p~-------s~~~~t~---rr-----~~~v~-~pVsGg~~g--A~~G~-slm~G---G~~----~a~~~v~ 129 (426)
+++. ++ |.-.... ++ ..|+. .|+.|.+.. ...|. .++.+ +++ +.++.++
T Consensus 126 ~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (667)
T PLN02712 126 KSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFL 205 (667)
T ss_pred HhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHH
Confidence 6553 33 2211111 11 34675 689887631 12233 45543 332 3455667
Q ss_pred HHHHHhhcccCCCCcEEEeCC
Q 043238 130 DILQRVAAHVDDGPCITYIGE 150 (426)
Q Consensus 130 ~iL~~iaa~~~~~~~v~~vG~ 150 (426)
.+++.+++ +++.+-+
T Consensus 206 ~l~~~lGa------~v~~ms~ 220 (667)
T PLN02712 206 EVFEREGC------KMVEMSC 220 (667)
T ss_pred HHHHHcCC------EEEEeCH
Confidence 89999994 5666654
No 96
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.87 E-value=0.00011 Score=81.49 Aligned_cols=166 Identities=11% Similarity=0.173 Sum_probs=97.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHH-----------HHhccccC-----CCCcccccCCCC----
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDET-----------LDRAHRED-----RPLHSQGLRPLH---- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l-----------~~~~~~~~-----~~~~~~~~~~~~---- 65 (426)
.++|+|||.|.||..||..++.+|++|++||++++.++.. .+.+.... .-.+++...+++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 392 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFER 392 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcC
Confidence 4689999999999999999999999999999999875432 11111000 001233333322
Q ss_pred -CCcE--ecCCchHH-HHHhhc----CCC-------cccc------chhh--h---hhccccC-CCCChhhhhcCCeEee
Q 043238 66 -PTPQ--IHHHRPLG-ETSGTS----TPS-------AVSM------KPVR--R---VCFISAW-GSPGARKARHGPSLMP 118 (426)
Q Consensus 66 -~~vI--v~~g~~vd-~vl~~l----~p~-------s~~~------~t~r--r---~~~v~~p-VsGg~~gA~~G~slm~ 118 (426)
+-|| |+-.-.++ +++.+| .|. |..+ .+.+ | .||..=| +.--. =+++
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lV-------Evv~ 465 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLV-------EVIR 465 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceE-------EeeC
Confidence 3344 55544432 343332 222 1111 1111 1 4444311 11100 1333
Q ss_pred c--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 119 G--GSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 119 G--G~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
| -++++.+.+..+++.++ +..+.+.+ .-| .+-|-|.+. .+.|++.|+++ | .++++|-.++
T Consensus 466 g~~T~~~~~~~~~~~~~~lg------k~pv~v~d-~pG----fv~nRi~~~---~~~ea~~lv~~-G-a~~e~ID~a~ 527 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMG------KTPIVVND-CPG----FFVNRVLFP---YFAGFSQLLRD-G-ADFRQIDKVM 527 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhC------CceEEecC-cCc----hhHHHHHHH---HHHHHHHHHHc-C-CCHHHHHHHH
Confidence 3 37899999999999999 66777753 333 344655444 35689998886 4 8999988883
No 97
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.86 E-value=0.00015 Score=74.19 Aligned_cols=135 Identities=8% Similarity=0.033 Sum_probs=81.9
Q ss_pred CCcEEEEch-hHHHHHHHHHHHh-CCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHh
Q 043238 6 LSRIGLAGL-AVMGQKLALNVPE-KGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSG 81 (426)
Q Consensus 6 ~~~IG~IGl-G~MG~~lA~nL~~-~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~ 81 (426)
+++|+|||+ |.||+.+|+.|.+ .|++|++||+..+......+ ..... +.+| +|... +.++++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~------------~v~~a-DlVilavPv~~-~~~~l~ 69 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPAT------------LLQRA-DVLIFSAPIRH-TAALIE 69 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHH------------HhcCC-CEEEEeCCHHH-HHHHHH
Confidence 358999999 9999999999986 48999999986332211111 11121 3344 55544 556666
Q ss_pred hcC-------CCccccc-------hhh---h--hhccc-cCCCCChh-hhhcCC-eEe-ecCCHHHHHHHHHHHHHhhcc
Q 043238 82 TST-------PSAVSMK-------PVR---R--VCFIS-AWGSPGAR-KARHGP-SLM-PGGSFEAYNNIRDILQRVAAH 138 (426)
Q Consensus 82 ~l~-------p~s~~~~-------t~r---r--~~~v~-~pVsGg~~-gA~~G~-slm-~GG~~~a~~~v~~iL~~iaa~ 138 (426)
++. |+++.-| ..+ . ..||+ .|+.|.+. +--.|. .++ ++.+.+..+.++.+++.++
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~G-- 147 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQ-- 147 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcC--
Confidence 543 3311111 111 1 56887 59998864 333455 444 5555666788999999999
Q ss_pred cCCCCcEEEeCCCchhhHHHHH
Q 043238 139 VDDGPCITYIGEGGSGNFVKMV 160 (426)
Q Consensus 139 ~~~~~~v~~vG~~Gag~~vKmv 160 (426)
..+..+-+.---..+-.+
T Consensus 148 ----a~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 148 ----AECVYATPEHHDRVMALV 165 (370)
T ss_pred ----CEEEEcCHHHHHHHHHHH
Confidence 467777764433334333
No 98
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.80 E-value=0.00019 Score=79.73 Aligned_cols=166 Identities=13% Similarity=0.182 Sum_probs=97.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH-----------hccccC-----CCCcccccCCCC----
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD-----------RAHRED-----RPLHSQGLRPLH---- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~-----------~~~~~~-----~~~~~~~~~~~~---- 65 (426)
.++|||||.|.||..||..++.+|++|++||++++.+++..+ .+.-.. .-.+++...+++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 414 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKN 414 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 467999999999999999999999999999999987655321 110000 001233333322
Q ss_pred -CCcE--ecCCchHH-HHHhhc----CCC--------cc-----ccchhhh-----hhccccCCCCChhhhhcCC-eEee
Q 043238 66 -PTPQ--IHHHRPLG-ETSGTS----TPS--------AV-----SMKPVRR-----VCFISAWGSPGARKARHGP-SLMP 118 (426)
Q Consensus 66 -~~vI--v~~g~~vd-~vl~~l----~p~--------s~-----~~~t~rr-----~~~v~~pVsGg~~gA~~G~-slm~ 118 (426)
+-|| |+..-.++ +++.+| .|. ++ ...+.+. .||.. |+.-- .. =++.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~-P~~~m------~LvEvv~ 487 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFS-PVDKM------QLLEIIT 487 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccC-CcccC------ceEEEeC
Confidence 2344 55554442 333332 232 11 1111111 45543 21100 00 1222
Q ss_pred --cCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 119 --GGSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 119 --GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
.-++++.+.+..+++.++ +..+.+++ .-| .+-|-+.. ..+.|++.|+.. | +++++|-.++
T Consensus 488 g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pG----Fi~NRi~~---~~~~ea~~lv~e-G-v~~~~ID~a~ 549 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQG------KVVIVVKD-GPG----FYTTRCLG---PMLAEVIRLLQE-G-VDPKKLDKLT 549 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCC------CeEEEECC-cCC----chHHHHHH---HHHHHHHHHHHc-C-CCHHHHHHHH
Confidence 247899999999999999 67777764 233 23454443 456899999876 3 7999888874
No 99
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.78 E-value=0.00016 Score=80.08 Aligned_cols=166 Identities=12% Similarity=0.149 Sum_probs=98.1
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH-----------hccccC-----CCCcccccCCCC---
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD-----------RAHRED-----RPLHSQGLRPLH--- 65 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~-----------~~~~~~-----~~~~~~~~~~~~--- 65 (426)
..++|+|||.|.||..||..++.+|++|++||++++.+++..+ .+.-.. .-.+++...+++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD 391 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 3468999999999999999999999999999999987654321 110000 001233333322
Q ss_pred --CCcE--ecCCchHH-HHHhhc----CCC-------cccc------chhhh-----hhcccc-CCCCChhhhhcCCeEe
Q 043238 66 --PTPQ--IHHHRPLG-ETSGTS----TPS-------AVSM------KPVRR-----VCFISA-WGSPGARKARHGPSLM 117 (426)
Q Consensus 66 --~~vI--v~~g~~vd-~vl~~l----~p~-------s~~~------~t~rr-----~~~v~~-pVsGg~~gA~~G~slm 117 (426)
+-|| |+-.-.++ +++.+| .|. |..+ .+.+. .||..= ++.--. =++
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lv-------Evv 464 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLV-------EVI 464 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceE-------eec
Confidence 3344 55544442 344333 232 1111 11111 455431 111000 122
Q ss_pred ec--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 118 PG--GSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 118 ~G--G~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+| -++++++.+..+++.++ +..+.+++ .-| .+-|-|.+.. +.|++.|+.. | .++++|-.+
T Consensus 465 ~g~~Ts~~~~~~~~~~~~~lg------k~pv~v~d-~pG----fi~NRl~~~~---~~ea~~l~~e-G-~~~~~ID~a 526 (714)
T TIGR02437 465 RGEKSSDETIATVVAYASKMG------KTPIVVND-CPG----FFVNRVLFPY---FGGFSKLLRD-G-ADFVRIDKV 526 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CEEEEeCC-ccc----chHHHHHHHH---HHHHHHHHHC-C-CCHHHHHHH
Confidence 22 37899999999999999 67777764 333 3456664443 5799999875 4 799999888
No 100
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.78 E-value=7.6e-05 Score=69.90 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
||+|+|+|.|+||++||++|++.||+|.+-+|+.++..+..
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~ 41 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAA 41 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHH
Confidence 57899999999999999999999999999977776644443
No 101
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.77 E-value=3.2e-05 Score=71.29 Aligned_cols=38 Identities=18% Similarity=0.591 Sum_probs=33.0
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHH
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDET 45 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l 45 (426)
+|+|||.|.||..+|..++.+|++|.+||++++..+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~ 38 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERA 38 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhh
Confidence 69999999999999999999999999999999876543
No 102
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.75 E-value=4.6e-05 Score=75.97 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=35.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
.++|||||+|.||.++|+||.+.|++|.+|||.....+...+.+
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G 59 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG 59 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC
Confidence 36899999999999999999999999999998754444333333
No 103
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.75 E-value=2.3e-05 Score=72.60 Aligned_cols=41 Identities=29% Similarity=0.406 Sum_probs=34.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|+|+|||+|.+|..+|..|+++||+|.+||.++++++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 68999999999999999999999999999999999988754
No 104
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=9.2e-05 Score=73.36 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=35.2
Q ss_pred CCcEEEEchh-HHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 6 LSRIGLAGLA-VMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 6 ~~~IG~IGlG-~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
-++|+|||+| .||.+||.+|.++|++|++||++....+++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~ 200 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALC 200 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHH
Confidence 3689999996 9999999999999999999998876554443
No 105
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.56 E-value=0.00058 Score=75.55 Aligned_cols=166 Identities=13% Similarity=0.207 Sum_probs=96.3
Q ss_pred CCcEEEEchhHHHHHHHHHHH-hCCCeEEEEeCCccchHHHH-----------HhccccC-----CCCcccccCCCC---
Q 043238 6 LSRIGLAGLAVMGQKLALNVP-EKGFQISVYNRTTSKVDETL-----------DRAHRED-----RPLHSQGLRPLH--- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~-~~G~~V~vynr~~~~~~~l~-----------~~~~~~~-----~~~~~~~~~~~~--- 65 (426)
.++|+|||.|.||..+|..++ .+|++|++||++++..+... +.+.-.. .-.+++...+++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 383 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFK 383 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhc
Confidence 468999999999999999998 58999999999998654432 1111000 001233333333
Q ss_pred --CCcE--ecCCchHH-HHHhhc----CCC-------cccc------chhh--h---hhccccC-CCCChhhhhcCCeEe
Q 043238 66 --PTPQ--IHHHRPLG-ETSGTS----TPS-------AVSM------KPVR--R---VCFISAW-GSPGARKARHGPSLM 117 (426)
Q Consensus 66 --~~vI--v~~g~~vd-~vl~~l----~p~-------s~~~------~t~r--r---~~~v~~p-VsGg~~gA~~G~slm 117 (426)
+-|| |+..-.++ +++.+| .|. |..+ .+.+ | .||+.=| ..--. =++
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lV-------Evv 456 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLV-------EVI 456 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceE-------EEe
Confidence 3344 55554442 344333 222 1111 1111 1 4554311 11000 133
Q ss_pred ec--CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 118 PG--GSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 118 ~G--G~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
+| -++++++.+..+++.++ +..+.+.+ .-| .+-|-|.+ ..+.|++.+++. | +++++|-.++
T Consensus 457 ~g~~T~~~~~~~~~~~~~~~g------k~pv~v~d-~pG----fi~nRl~~---~~~~Ea~~l~~~-G-~~~~dID~a~ 519 (699)
T TIGR02440 457 PHAGTSEQTIATTVALAKKQG------KTPIVVAD-KAG----FYVNRILA---PYMNEAARLLLE-G-EPVEHIDKAL 519 (699)
T ss_pred CCCCCCHHHHHHHHHHHHHcC------CeEEEEcc-ccc----hHHHHHHH---HHHHHHHHHHHC-C-CCHHHHHHHH
Confidence 32 47899999999999999 67777754 333 23344433 456789888885 3 6888887773
No 106
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.51 E-value=4e-05 Score=66.64 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=47.6
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEE-EEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHH
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQIS-VYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETS 80 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~-vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl 80 (426)
...++|||||.|.+|.+|++.|.++||.|. +|+|+.+..+++...-........-...... +.+| ||++ ++.+|.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~a-Dlv~iavpDd-aI~~va 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDA-DLVFIAVPDD-AIAEVA 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC--SEEEE-S-CC-HHHHHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccC-CEEEEEechH-HHHHHH
Confidence 345789999999999999999999999985 5699998887776542211100000011110 3333 6665 678888
Q ss_pred hhcCC
Q 043238 81 GTSTP 85 (426)
Q Consensus 81 ~~l~p 85 (426)
++|..
T Consensus 86 ~~La~ 90 (127)
T PF10727_consen 86 EQLAQ 90 (127)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87754
No 107
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.48 E-value=0.00072 Score=74.95 Aligned_cols=169 Identities=15% Similarity=0.212 Sum_probs=94.4
Q ss_pred CCcEEEEchhHHHHHHHHHHH-hCCCeEEEEeCCccchHHHH-----------HhccccC-----CCCcccccCCCC---
Q 043238 6 LSRIGLAGLAVMGQKLALNVP-EKGFQISVYNRTTSKVDETL-----------DRAHRED-----RPLHSQGLRPLH--- 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~-~~G~~V~vynr~~~~~~~l~-----------~~~~~~~-----~~~~~~~~~~~~--- 65 (426)
.++|+|||.|.||..||..++ .+|++|++||++++..+... +.+.-.. .-.+++...+++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 388 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFK 388 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhc
Confidence 468999999999999999999 88999999999988654421 1111000 001233333332
Q ss_pred --CCcE--ecCCchH-HHHHhhc----CCC-------cccc------chhhhhhccccCCCCChhhhhcCC--eEeec--
Q 043238 66 --PTPQ--IHHHRPL-GETSGTS----TPS-------AVSM------KPVRRVCFISAWGSPGARKARHGP--SLMPG-- 119 (426)
Q Consensus 66 --~~vI--v~~g~~v-d~vl~~l----~p~-------s~~~------~t~rr~~~v~~pVsGg~~gA~~G~--slm~G-- 119 (426)
+-+| |+..-.+ .+++.+| .|. |..+ .+.+.-+|+++--.. .+..-| =+++|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~---P~~~~~lVEvv~g~~ 465 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFS---PVEKMPLVEVIPHAK 465 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCC---ccccCceEEEECCCC
Confidence 3344 5544333 2344332 333 1111 111112233322111 000011 23333
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 120 GSFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 120 G~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
-++++.+.+..+++.++ +....+.+ ..|- +-|-+.. ..+.|++.+++. | +++++|-.+
T Consensus 466 Ts~~~~~~~~~~~~~~g------k~pv~v~d-~pGf----i~nRl~~---~~~~EA~~lv~e-G-v~~~dID~a 523 (708)
T PRK11154 466 TSAETIATTVALAKKQG------KTPIVVRD-GAGF----YVNRILA---PYINEAARLLLE-G-EPIEHIDAA 523 (708)
T ss_pred CCHHHHHHHHHHHHHcC------CceEEEec-cCcH----HHHHHHH---HHHHHHHHHHHc-C-CCHHHHHHH
Confidence 47899999999999998 56666753 3332 3344433 445789999887 3 788888777
No 108
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.47 E-value=0.0002 Score=72.30 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=33.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVD 43 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~ 43 (426)
++|||||+|.||+++|..|...|++|.+|||+++...
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~ 183 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDL 183 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhh
Confidence 5799999999999999999999999999999986543
No 109
>PRK07574 formate dehydrogenase; Provisional
Probab=97.38 E-value=0.0003 Score=72.28 Aligned_cols=80 Identities=8% Similarity=0.031 Sum_probs=54.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-----CCcE---ecCCchHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-----PTPQ---IHHHRPLGE 78 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~vI---v~~g~~vd~ 78 (426)
++|||||+|.||+.+|++|..-|++|.+|||+....+...+.+. ..+.+++ .++| +|..+.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~--------~~~~~l~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL--------TYHVSFDSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc--------eecCCHHHHhhcCCEEEEcCCCCHHHHH
Confidence 57999999999999999999999999999998744332222221 1112222 3444 676666655
Q ss_pred H-----HhhcCCCccccchhh
Q 043238 79 T-----SGTSTPSAVSMKPVR 94 (426)
Q Consensus 79 v-----l~~l~p~s~~~~t~r 94 (426)
+ ++.++++++.-++.|
T Consensus 265 li~~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred HhCHHHHhcCCCCcEEEECCC
Confidence 4 566777766666555
No 110
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.33 E-value=0.0004 Score=68.17 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=40.4
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhC--CCeEE-EEeCCccchHHHHHh
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEK--GFQIS-VYNRTTSKVDETLDR 48 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~--G~~V~-vynr~~~~~~~l~~~ 48 (426)
|+...+++|||||+|.||+.++.+|.+. +++|. +|||++++.+++.+.
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~ 51 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG 51 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh
Confidence 6665567899999999999999999863 78875 899999998887665
No 111
>PLN03139 formate dehydrogenase; Provisional
Probab=97.31 E-value=0.00041 Score=71.34 Aligned_cols=81 Identities=9% Similarity=0.020 Sum_probs=54.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-----CCcE---ecCCchHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-----PTPQ---IHHHRPLG 77 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~vI---v~~g~~vd 77 (426)
-++|||||+|.||+.+|++|..-|.+|.+|||+....+...+.+.. ...+++ .++| +|..+.++
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~--------~~~~l~ell~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAK--------FEEDLDAMLPKCDVVVINTPLTEKTR 270 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCce--------ecCCHHHHHhhCCEEEEeCCCCHHHH
Confidence 3589999999999999999999999999999986544433322211 122222 3444 67666665
Q ss_pred HH-----HhhcCCCccccchhh
Q 043238 78 ET-----SGTSTPSAVSMKPVR 94 (426)
Q Consensus 78 ~v-----l~~l~p~s~~~~t~r 94 (426)
.+ ++.++++++.-++.|
T Consensus 271 ~li~~~~l~~mk~ga~lIN~aR 292 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIVNNAR 292 (386)
T ss_pred HHhCHHHHhhCCCCeEEEECCC
Confidence 54 456777766666555
No 112
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.26 E-value=0.00032 Score=70.27 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-----CCcE---ecCCchHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-----PTPQ---IHHHRPLGE 78 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~vI---v~~g~~vd~ 78 (426)
++|||||+|.||+.+|++|...|++|.+|||++++...+... ....+++ +++| +|..+.++.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~----------~~~~~l~e~l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF----------AGREELSAFLSQTRVLINLLPNTPETVG 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee----------cccccHHHHHhcCCEEEECCCCCHHHHH
Confidence 589999999999999999999999999999987653211110 0011221 3444 777776655
Q ss_pred H-----HhhcCCCccccchhh
Q 043238 79 T-----SGTSTPSAVSMKPVR 94 (426)
Q Consensus 79 v-----l~~l~p~s~~~~t~r 94 (426)
+ ++.++|+.+.-++.|
T Consensus 207 li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 207 IINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred HhHHHHHhcCCCCcEEEECCC
Confidence 4 456777655555544
No 113
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.21 E-value=0.00057 Score=60.48 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=39.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~~~~l~~~~ 49 (426)
.++|+|||+|.||..++.+|.+.| ++|++|||++++.+++.+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 468999999999999999999996 89999999999988877653
No 114
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.11 E-value=0.00067 Score=68.52 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=33.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
-++|||||+|.||+.+|+.|...|++|.+|||++..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~ 185 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP 185 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 368999999999999999999999999999998754
No 115
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.10 E-value=0.00084 Score=61.56 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=35.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
.++|||||+|.+|+.+|+.|..-|.+|.+|||+....+...+
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~ 77 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE 77 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc
Confidence 368999999999999999999999999999999987653333
No 116
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.09 E-value=0.00073 Score=59.20 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=41.7
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCe-EEEEeCCccchHHHHHhc
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQ-ISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~-V~vynr~~~~~~~l~~~~ 49 (426)
-..+++.|||.|-||++++..|.+.|.+ |+++||+.++.+++.+..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 3456899999999999999999999986 999999999999998765
No 117
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.01 E-value=0.017 Score=56.38 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 17 MGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 17 MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
||+.+|..|+++|++|++|.|+ ++.+.+.+.|
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~G 33 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEG 33 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCC
Confidence 7999999999999999999997 6677776554
No 118
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.01 E-value=0.003 Score=62.96 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=49.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC---CCcE--ecCCchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH---PTPQ--IHHHRPLGETSG 81 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~vI--v~~g~~vd~vl~ 81 (426)
.+|||||+|.||+=+|.-|.++|+.|.+.+|+. -+.+.+..+... .+...++- |++| -..-..++.|+.
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsilsiekila 126 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILSIEKILA 126 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhhHHHHHH
Confidence 379999999999999999999999999999987 455554433322 22222221 6666 233344677776
Q ss_pred hcCC
Q 043238 82 TSTP 85 (426)
Q Consensus 82 ~l~p 85 (426)
...|
T Consensus 127 typf 130 (480)
T KOG2380|consen 127 TYPF 130 (480)
T ss_pred hcCc
Confidence 5443
No 119
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.93 E-value=0.0013 Score=65.19 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=31.7
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEe-CCcc
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYN-RTTS 40 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vyn-r~~~ 40 (426)
-++|+||| .|.||.+||.+|.++|++|++|+ ||++
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~ 194 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD 194 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC
Confidence 36899999 99999999999999999999995 7764
No 120
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.89 E-value=0.00064 Score=61.31 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc-chHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS-KVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~-~~~~l~~~~ 49 (426)
.++|+|||.|..|.+.|+||.+.|++|.+-.|..+ ..++..+.|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G 48 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG 48 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC
Confidence 46899999999999999999999999999999988 455555554
No 121
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.78 E-value=0.0021 Score=64.93 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=31.1
Q ss_pred CcEEEEchhHHHHHHHHHHH-hCCCeEEEEeCCccc
Q 043238 7 SRIGLAGLAVMGQKLALNVP-EKGFQISVYNRTTSK 41 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~-~~G~~V~vynr~~~~ 41 (426)
++|||||+|.||+.+|.+|+ ..|.+|.+||+++.+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~ 182 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA 182 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH
Confidence 58999999999999999994 568899999998754
No 122
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.72 E-value=0.0022 Score=63.52 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
++|+|||+|.||..+|..|...|.+|+++||++++.+.+.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g 194 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMG 194 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC
Confidence 5899999999999999999999999999999998776665443
No 123
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.65 E-value=0.0024 Score=63.98 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=37.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHh--CCCeEEEEeCCccchHHHHHh
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPE--KGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~--~G~~V~vynr~~~~~~~l~~~ 48 (426)
...+|+|||+|.||..++..+.. ...+|.+|||++++.++|.+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~ 169 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAE 169 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 34689999999999999986553 457899999999999998876
No 124
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.63 E-value=0.0024 Score=62.46 Aligned_cols=42 Identities=14% Similarity=0.349 Sum_probs=36.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhC--CCe-EEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEK--GFQ-ISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~--G~~-V~vynr~~~~~~~l~~~ 48 (426)
++|||||+|.||..++.+|.+. +++ +.+|||++++.+++.+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~ 46 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK 46 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh
Confidence 5899999999999999999876 455 67899999998887764
No 125
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.57 E-value=0.0024 Score=63.68 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=31.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
-++|||||+|.||+.+|+.+..-|++|.+|||+..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~ 156 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYV 156 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 36899999999999999988888999999999853
No 126
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.53 E-value=0.0046 Score=66.27 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=31.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++|||||+|.||+.+|++|..-|++|.+||++.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 171 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI 171 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 589999999999999999999999999999863
No 127
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.50 E-value=0.0038 Score=62.08 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDE 44 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~ 44 (426)
|+||+|||.|.||..+|..++.+|+ +|.++|+++++.+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~ 41 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQG 41 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHH
Confidence 4699999999999999999999876 99999999887654
No 128
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.0033 Score=59.97 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=38.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|+|.|||+|.+|..+|++|.+.|++|.+-++++++++++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh
Confidence 58999999999999999999999999999999999988654
No 129
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.46 E-value=0.0042 Score=61.74 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
.++++|||.|.+|..++..|...|.+|+++||++++.+...+.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G 195 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMG 195 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC
Confidence 46899999999999999999999999999999988766655544
No 130
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.44 E-value=0.0053 Score=65.84 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|||||+|.||+.+|++|...|++|.+|||+..
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 174 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYIS 174 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 35899999999999999999999999999999653
No 131
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.35 E-value=0.0035 Score=59.27 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDET 45 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l 45 (426)
++.|+|||.|.||+.||.--+..|++|.++|++++...+.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A 50 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRA 50 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHH
Confidence 3579999999999999999999999999999999876654
No 132
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.28 E-value=0.0043 Score=62.43 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=32.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
-+++||||+|.+|+.+|..+..-|++|.+||+...+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~ 177 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPR 177 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCch
Confidence 368999999999999999999999999999994443
No 133
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.24 E-value=0.0067 Score=59.33 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=39.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.+++.|+|.|.||.+++..|++.|++|+++||++++.+++.+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~ 159 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAER 159 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4579999999999999999999999999999999998887764
No 134
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.15 E-value=0.0076 Score=53.11 Aligned_cols=41 Identities=15% Similarity=0.383 Sum_probs=37.1
Q ss_pred EEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcc
Q 043238 9 IGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 9 IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~ 50 (426)
|.|+|.|.||.-+|..|.+.|++|+++.|++ +.+.+.+.+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~ 41 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGL 41 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeE
Confidence 7899999999999999999999999999999 8888776553
No 135
>PLN00203 glutamyl-tRNA reductase
Probab=96.15 E-value=0.0067 Score=64.80 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=39.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~ 48 (426)
..+|+|||.|.||..++.+|..+|. +|+++||+.++.+.+.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~ 309 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE 309 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999997 799999999999998865
No 136
>PLN02928 oxidoreductase family protein
Probab=96.14 E-value=0.0056 Score=62.25 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
-++|||||+|.||+.+|+.|..-|.+|.+|||+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~ 193 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWT 193 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCC
Confidence 36899999999999999999999999999999854
No 137
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.10 E-value=0.0081 Score=60.06 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=38.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~~~~l~~~ 48 (426)
.++|+|||.|.||..++.+|...| .+|+++||++++.+++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~ 221 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE 221 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999866 6899999999998888765
No 138
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.10 E-value=0.01 Score=59.19 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=33.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVD 43 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~ 43 (426)
+||+|||.|.||..+|..|+.+|+ +|.++|++++..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~ 39 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ 39 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH
Confidence 589999999999999999999887 8999999777544
No 139
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.04 E-value=0.0081 Score=60.51 Aligned_cols=43 Identities=23% Similarity=0.158 Sum_probs=36.0
Q ss_pred CCcEEEEchhHHHHHHHHHHH--hCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVP--EKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~--~~G~~V~vynr~~~~~~~l~~~ 48 (426)
..++||||+|.||...++.|. ....+|.||||++++.+.|.+.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~ 172 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALR 172 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH
Confidence 467999999999999766664 4457999999999999988764
No 140
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.02 E-value=0.0099 Score=61.92 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=39.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccchHHHHHh
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~~~~l~~~ 48 (426)
...+|+|||.|.||..++..|...| .+|++|||+.++.+++.+.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~ 223 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE 223 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 3468999999999999999999999 7899999999988877654
No 141
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.02 E-value=0.0069 Score=62.30 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|||||+|.||+.+|..|..-|++|.+||+...
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~ 150 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQ 150 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccc
Confidence 36899999999999999999999999999998643
No 142
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.94 E-value=0.0063 Score=57.05 Aligned_cols=34 Identities=18% Similarity=0.463 Sum_probs=31.8
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRT 38 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~ 38 (426)
...+|+|||+|.||+.+|.+|++.|+ +|+++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999998 69999998
No 143
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.83 E-value=0.0095 Score=61.18 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.++|||||+|.||+.+|..|..-|.+|.+||+..
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~ 149 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPR 149 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcc
Confidence 3689999999999999999999999999999753
No 144
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=95.79 E-value=0.11 Score=50.49 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=69.5
Q ss_pred HHHHHHhCC--CeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHhhcCCC----ccccch
Q 043238 21 LALNVPEKG--FQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGTSTPS----AVSMKP 92 (426)
Q Consensus 21 lA~nL~~~G--~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~l~p~----s~~~~t 92 (426)
+|+.|.++| ++|++||++++..+...+.|...........+.+. +.+| +|... +.++++++.|. ++.-|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~-DlvvlavP~~~-~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDA-DLVVLAVPVSA-IEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCC-SEEEE-S-HHH-HHHHHHHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCC-CEEEEcCCHHH-HHHHHHHhhhhcCCCcEEEEe
Confidence 688899999 79999999999988877766542100001122221 3344 66544 56677666552 111111
Q ss_pred ----------hhh-----hhccc-cCCCCCh----hhhh----cCC--eEeecC--CHHHHHHHHHHHHHhhcccCCCCc
Q 043238 93 ----------VRR-----VCFIS-AWGSPGA----RKAR----HGP--SLMPGG--SFEAYNNIRDILQRVAAHVDDGPC 144 (426)
Q Consensus 93 ----------~rr-----~~~v~-~pVsGg~----~gA~----~G~--slm~GG--~~~a~~~v~~iL~~iaa~~~~~~~ 144 (426)
.++ ..||+ .|+.|.+ ..+. .|. .+.++. ++++++.++.+++.+++ +
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga------~ 152 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGA------R 152 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-------E
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCC------E
Confidence 111 57887 4888863 2222 344 444554 56899999999999994 5
Q ss_pred EEEeCC
Q 043238 145 ITYIGE 150 (426)
Q Consensus 145 v~~vG~ 150 (426)
+..+-+
T Consensus 153 ~~~~~~ 158 (258)
T PF02153_consen 153 VVEMDA 158 (258)
T ss_dssp EEE--H
T ss_pred EEEcCH
Confidence 666654
No 145
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.79 E-value=0.013 Score=58.30 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=36.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCC--CeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKG--FQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G--~~V~vynr~~~~~~~l~~ 47 (426)
+||+|||.|.+|+.+|..|+.+| ++|.++||++++++.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~ 43 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEAL 43 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHh
Confidence 37999999999999999999999 589999999998776654
No 146
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.66 E-value=0.012 Score=58.07 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
-++|+|||. |.||.+||.+|.++|++|++|+....
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~ 193 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR 193 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC
Confidence 368999999 99999999999999999999954333
No 147
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.58 E-value=0.025 Score=57.01 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=50.8
Q ss_pred CcEEEEchhHHHHHHHHHHH-hCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-----CCcE---ecCCchH-
Q 043238 7 SRIGLAGLAVMGQKLALNVP-EKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-----PTPQ---IHHHRPL- 76 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~-~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~vI---v~~g~~v- 76 (426)
++|||||+|.+|+.+|+.+. .-|.+|.+|||...... ..+.+.. ..+++ .++| +|-.+..
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~~~~---------~~~l~ell~~sDvv~lh~plt~~T~ 215 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERFNAR---------YCDLDTLLQESDFVCIILPLTDETH 215 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhcCcE---------ecCHHHHHHhCCEEEEeCCCChHHh
Confidence 68999999999999999997 77889999998753211 1111111 11222 4444 5555444
Q ss_pred ----HHHHhhcCCCccccchhhh
Q 043238 77 ----GETSGTSTPSAVSMKPVRR 95 (426)
Q Consensus 77 ----d~vl~~l~p~s~~~~t~rr 95 (426)
.+.++.++|+.+.-++.|-
T Consensus 216 ~li~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 216 HLFGAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred hccCHHHHhcCCCCeEEEECCCc
Confidence 3456778888666666553
No 148
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.55 E-value=0.02 Score=59.80 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=39.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~ 48 (426)
.++|+|||.|.||..++..|...|+ +|+++||++++.+.+.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~ 225 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE 225 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999997 899999999998887765
No 149
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.44 E-value=0.018 Score=57.53 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=34.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCC--CeEEEEeCCccchHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKG--FQISVYNRTTSKVDE 44 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G--~~V~vynr~~~~~~~ 44 (426)
|||+|||.|.+|.++|..|+.+| .+|.++|+++++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g 40 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEG 40 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhh
Confidence 47999999999999999999999 589999999987763
No 150
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.43 E-value=0.034 Score=55.99 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=32.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.-+++||||+|.+|+++|+++..-|.+|..|||++.
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~ 180 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN 180 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 347899999999999999999977789999999985
No 151
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.41 E-value=0.022 Score=55.46 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=35.4
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCC---Ce-EEEEeCCccchHHHHHh
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKG---FQ-ISVYNRTTSKVDETLDR 48 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G---~~-V~vynr~~~~~~~l~~~ 48 (426)
|.++||+||+|.||+.++..|.+.+ ++ +.||+|++++.+++.+.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~ 48 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR 48 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc
Confidence 4579999999999999999987543 44 56789998888887643
No 152
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.37 E-value=0.021 Score=48.06 Aligned_cols=42 Identities=14% Similarity=0.412 Sum_probs=35.7
Q ss_pred cEEEEchhHHHHHHHHHHHhC--CCeE-EEEeCCccchHHHHHhc
Q 043238 8 RIGLAGLAVMGQKLALNVPEK--GFQI-SVYNRTTSKVDETLDRA 49 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~--G~~V-~vynr~~~~~~~l~~~~ 49 (426)
+|||||+|.+|+.....+.+. +++| .+||+++++.+.+.+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~ 46 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY 46 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh
Confidence 799999999999999999876 4564 58999999999886653
No 153
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.36 E-value=0.027 Score=55.36 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=39.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~~~~l~~~~ 49 (426)
.+++.|+|.|.+|++++..|+..| .+|+++||+.++.+++.+..
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 357999999999999999999999 79999999999998887653
No 154
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.27 E-value=0.026 Score=56.72 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=33.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccch
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKV 42 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~ 42 (426)
.+||+|||.|.||+.+|..++..|+ +|+++|+++++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~ 43 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP 43 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh
Confidence 3589999999999999999999995 999999999864
No 155
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.17 E-value=0.029 Score=55.31 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=39.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~ 48 (426)
.+++-|||.|-||++++..|++.|. +|+++||+.++.+++.+.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~ 168 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL 168 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 3579999999999999999999997 799999999999998764
No 156
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.15 E-value=0.029 Score=55.44 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=38.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~ 48 (426)
++|.|||.|-+|++++..|+..|. +|+++||+.++.+.+.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~ 170 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE 170 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 579999999999999999999997 799999999999988764
No 157
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.12 E-value=0.031 Score=44.87 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhC-CCeEEEEeC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEK-GFQISVYNR 37 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~-G~~V~vynr 37 (426)
.++++|+|.|.||..++..|.+. +.+|.+|||
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999998 679999999
No 158
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.11 E-value=0.035 Score=54.82 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=50.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc-hHHHHHhccccCCCCcccccCCCC-CCcE--ecCCchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK-VDETLDRAHREDRPLHSQGLRPLH-PTPQ--IHHHRPLGETSG 81 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~-~~~l~~~~~~~~~~~~~~~~~~~~-~~vI--v~~g~~vd~vl~ 81 (426)
.++|+|||.|.-|.+=|+||.++|.+|++=.|..+. .+...+.|-... +..+-.+ .++| +.|++.-.+|++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-----~v~ea~k~ADvim~L~PDe~q~~vy~ 92 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-----TVEEAAKRADVVMILLPDEQQKEVYE 92 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-----cHHHHhhcCCEEEEeCchhhHHHHHH
Confidence 368999999999999999999999999999888776 444444443210 1111111 4455 666665566665
Q ss_pred -hcCC
Q 043238 82 -TSTP 85 (426)
Q Consensus 82 -~l~p 85 (426)
++.|
T Consensus 93 ~~I~p 97 (338)
T COG0059 93 KEIAP 97 (338)
T ss_pred HHhhh
Confidence 4554
No 159
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.07 E-value=0.03 Score=57.94 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=40.9
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccchHHHHHhc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~~~~l~~~~ 49 (426)
..+++-|||.|-||.-.|.+|.++| .+|++-|||.+++++|.+.-
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~ 222 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL 222 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh
Confidence 3467999999999999999999999 68999999999999998764
No 160
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.07 E-value=0.03 Score=58.32 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=39.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~~ 49 (426)
.++|.|||.|-||+.++.+|+++|. +|+++||+.++.+.+.+..
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~ 225 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF 225 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh
Confidence 4689999999999999999999995 7999999999999888753
No 161
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.05 E-value=0.024 Score=58.89 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=31.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++|||||+|.+|+.+|+.+..-|.+|.+||+++
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 589999999999999999999999999999874
No 162
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.04 E-value=0.03 Score=55.64 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=31.7
Q ss_pred EEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchH
Q 043238 9 IGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVD 43 (426)
Q Consensus 9 IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~ 43 (426)
|+|||.|.||..+|..|+.+|+ +|+++|+++++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~ 36 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ 36 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH
Confidence 7899999999999999998886 9999999987653
No 163
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.98 E-value=0.042 Score=48.48 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=35.0
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCC--eEEEEeCCccchHHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGF--QISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~--~V~vynr~~~~~~~l~ 46 (426)
|||+|||. |..|+.+|..|...+. ++..+|+++++++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a 43 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEA 43 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeee
Confidence 58999999 9999999999998885 7999999988765543
No 164
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.91 E-value=0.046 Score=54.83 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=39.2
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCC--eEEEEeCCccchHHHH
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGF--QISVYNRTTSKVDETL 46 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~--~V~vynr~~~~~~~l~ 46 (426)
|-....+||+|||.|..|+++|..|+..|. ++.++|++.++++...
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~ 48 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDA 48 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHH
Confidence 445556799999999999999999999997 8999999988765544
No 165
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.89 E-value=0.04 Score=58.42 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=39.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.++++|+|.|.||.+++..|++.|++|.++||+.++.+.+.+.
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~ 374 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASR 374 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 3579999999999999999999999999999999998887654
No 166
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.84 E-value=0.047 Score=54.95 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=36.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHh-CC-CeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPE-KG-FQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~-~G-~~V~vynr~~~~~~~l~~~ 48 (426)
..+|+|||+|.+|...+..++. .+ -+|.+|||++++.++|.+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~ 171 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQE 171 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH
Confidence 4579999999999999888763 45 4899999999999988764
No 167
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.84 E-value=0.034 Score=56.78 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=33.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+..+|.|||.|..|..+|..|+++|++|++++|+++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 346899999999999999999999999999999875
No 168
>PRK07236 hypothetical protein; Provisional
Probab=94.73 E-value=0.04 Score=56.27 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.6
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|-.++.++|.|||.|.-|..+|..|+++|++|+|++|.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6667778999999999999999999999999999999864
No 169
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.69 E-value=0.04 Score=55.33 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=34.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccchH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSKVD 43 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~~~ 43 (426)
.+||+|||.|.||..+|..++..| .+|.+||+++++.+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ 43 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch
Confidence 358999999999999999999999 69999999987754
No 170
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.66 E-value=0.067 Score=44.79 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=37.1
Q ss_pred EEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcc
Q 043238 9 IGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 9 IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~ 50 (426)
|-|+|.|.+|..++..|.+.+.+|.+.++++++++.+.+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~ 42 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV 42 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc
Confidence 458999999999999999987899999999999999987763
No 171
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.52 E-value=0.051 Score=55.93 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=40.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~~~~l~~~ 48 (426)
|++|-|||+|..|+..|.+|+.+| ++|++=+||.++++++.+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 468999999999999999999999 9999999999999988765
No 172
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.49 E-value=0.065 Score=48.87 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCcEEEEchhHH-HHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 6 LSRIGLAGLAVM-GQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 6 ~~~IG~IGlG~M-G~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
.++|-|||.|.| |..+|.+|.++|.+|++.||+.+...+..
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l 85 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT 85 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH
Confidence 468999999998 88899999999999999999976554433
No 173
>PRK04148 hypothetical protein; Provisional
Probab=94.42 E-value=0.052 Score=47.64 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=38.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
++|..||+| -|..+|..|++.|++|++-|.+++.++.+.+.+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~ 59 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG 59 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC
Confidence 579999999 999999999999999999999999988877664
No 174
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.40 E-value=0.047 Score=56.17 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=31.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.+|.|||.|.+|.+.|..|++.|++|+|.+|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999875
No 175
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.39 E-value=0.058 Score=53.79 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=38.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHh-CC-CeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPE-KG-FQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~-~G-~~V~vynr~~~~~~~l~~~~ 49 (426)
..+|+|||.|.||...+..+.. .+ .+|.+|||++++.++|.+.-
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~ 170 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHA 170 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3589999999999999999975 55 47999999999999988764
No 176
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.39 E-value=0.061 Score=56.66 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=36.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
++|+|||+|.+|+.+|..+...|.+|+++++++.+.......+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G 297 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG 297 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC
Confidence 5799999999999999999999999999999988764443333
No 177
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=94.35 E-value=0.45 Score=45.82 Aligned_cols=152 Identities=11% Similarity=0.087 Sum_probs=82.3
Q ss_pred CCeEEEEeCCccchHHHHHh-ccccCCCCcccccCCCCCCcE--ecCCchHHHHHhhcCCC--------ccccchh-hh-
Q 043238 29 GFQISVYNRTTSKVDETLDR-AHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGTSTPS--------AVSMKPV-RR- 95 (426)
Q Consensus 29 G~~V~vynr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~l~p~--------s~~~~t~-rr- 95 (426)
-++|.+|||++++.+.+.+. +.... .++...+... +.+| |+ ...+++|++++.+. |+..... ..
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~-~~~~e~~~~a-DiIiLaVk-P~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVAS-SDAQEAVKEA-DVVFLAVK-PQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEe-CChHHHHhhC-CEEEEEeC-HHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 36899999999999888765 32110 0111111111 3344 77 46688888877642 1111000 00
Q ss_pred hhccc--cCCC----CChhhhhcCCeEeecC---CHHHHHHHHHHHHHhhcccCCCCcEEEeCCC--chhhHHHHHHHHH
Q 043238 96 VCFIS--AWGS----PGARKARHGPSLMPGG---SFEAYNNIRDILQRVAAHVDDGPCITYIGEG--GSGNFVKMVHNGI 164 (426)
Q Consensus 96 ~~~v~--~pVs----Gg~~gA~~G~slm~GG---~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~--Gag~~vKmv~N~i 164 (426)
-.+++ .+|. -.+...+.|.+.+..+ +++..+.++.+|+.+| .++++.+. .....+--.-.++
T Consensus 86 ~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G-------~~~~v~E~~~~~~talsgsgPA~ 158 (245)
T TIGR00112 86 SQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVG-------EVVELPEALMDAVTALSGSGPAY 158 (245)
T ss_pred HHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCC-------CEEEECHHHcchHHhhccCcHHH
Confidence 12222 2222 1223444677544443 4567788999999999 45566431 1111111123677
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 043238 165 EYGDMQLISQAYDVLKHVGGVSNAELAEIF 194 (426)
Q Consensus 165 ~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if 194 (426)
.|..+.++.++- .+.| ++.++..++.
T Consensus 159 ~~~~~~al~~~~---v~~G-l~~~~A~~lv 184 (245)
T TIGR00112 159 VFLFIEALADAG---VKQG-LPRELALELA 184 (245)
T ss_pred HHHHHHHHHHHH---HHcC-CCHHHHHHHH
Confidence 777777777753 2344 9999888873
No 178
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.35 E-value=0.047 Score=54.67 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=31.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.++|||||+|.+|+.+|+.+..-|.+|.+|||+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~ 178 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG 178 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence 4689999999999999999998899999999975
No 179
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.26 E-value=0.058 Score=56.27 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=38.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|+|.|+|.|.+|..++..|.+.|++|.+.++++++++.+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 47999999999999999999999999999999999888765
No 180
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.20 E-value=0.085 Score=48.71 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=38.3
Q ss_pred CCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.+++.|+|. |.+|..++..|++.|++|.+++|+.++.+.+.+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~ 71 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS 71 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 367999995 9999999999999999999999999988887653
No 181
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.19 E-value=0.052 Score=54.48 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++|||||+|.+|+.+|+.+..-|.+|.+|||..
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~ 181 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPG 181 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence 589999999999999999999999999999864
No 182
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.11 E-value=0.076 Score=54.49 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=38.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.+|.|||.|.+|...+..+...|.+|.++||++++.+.+.+.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~ 209 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE 209 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh
Confidence 469999999999999999999999999999999988877654
No 183
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.10 E-value=0.061 Score=55.88 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccch
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKV 42 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~ 42 (426)
++|.|||+|.+|.++|+-|.+.|++|+++|++++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 579999999999999999999999999999987654
No 184
>PRK08291 ectoine utilization protein EutC; Validated
Probab=94.06 E-value=0.072 Score=53.70 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=37.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHh-CC-CeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPE-KG-FQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~-~G-~~V~vynr~~~~~~~l~~~~ 49 (426)
.++|+|||.|.+|...+..|.. .+ .+|.+|||++++.++|.+..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~ 177 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADL 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3589999999999998888875 45 58999999999999998653
No 185
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.99 E-value=0.074 Score=53.58 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=37.5
Q ss_pred CCcEEEEchhHHHHHHHHHHH-hCCC-eEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVP-EKGF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~-~~G~-~V~vynr~~~~~~~l~~~ 48 (426)
.++++|||.|.||...+..|+ ..+. +|.+|||++++.++|.+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~ 173 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQ 173 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH
Confidence 357999999999999999997 3664 799999999999998765
No 186
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.90 E-value=0.08 Score=46.38 Aligned_cols=38 Identities=29% Similarity=0.528 Sum_probs=32.5
Q ss_pred cEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHH
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDET 45 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l 45 (426)
+|.|||+|.+|+.++.+|+..|+ +++++|.+.-....+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl 39 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL 39 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh
Confidence 58999999999999999999998 799999876544444
No 187
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=93.89 E-value=0.076 Score=52.95 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=42.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhC-C-CeEEEEeCCccchHHHHHhccccCCCCcccccCCCC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEK-G-FQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~-G-~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 65 (426)
..++||||.|.+|...++.+..- . -+|.||||++++.++|.+.-... ++.++.++++++
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v~~~~~~~ 177 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDIRPVDNAE 177 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcEEEeCCHH
Confidence 35799999999999999888753 2 48999999999999987653221 012355555554
No 188
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.81 E-value=0.087 Score=54.97 Aligned_cols=44 Identities=14% Similarity=0.044 Sum_probs=38.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
.++|+|+|.|.+|..+|..+...|.+|+++|+++.+.......+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G 255 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG 255 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC
Confidence 35799999999999999999999999999999998865554443
No 189
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=93.79 E-value=1.8 Score=42.11 Aligned_cols=166 Identities=12% Similarity=0.075 Sum_probs=91.2
Q ss_pred CCcEEEEchhHH--------------------HHHHHHHHHhCCCeEEEEeCCccchH-----HHHHhccccCCCCcccc
Q 043238 6 LSRIGLAGLAVM--------------------GQKLALNVPEKGFQISVYNRTTSKVD-----ETLDRAHREDRPLHSQG 60 (426)
Q Consensus 6 ~~~IG~IGlG~M--------------------G~~lA~nL~~~G~~V~vynr~~~~~~-----~l~~~~~~~~~~~~~~~ 60 (426)
+|||.|+|.|+- |+.||..++++||+|..-+.+.+-.+ ++.+.|.+.. .+...+
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv-~dD~ea 79 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVV-SDDAEA 79 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEe-cCchhh
Confidence 368899998864 88999999999999999987766433 2333332110 011111
Q ss_pred cCCCCCCcE--ecCCch----HHHHHhhcCCC-------ccccc-----------hhhh-h---hccccCCCCChhhhhc
Q 043238 61 LRPLHPTPQ--IHHHRP----LGETSGTSTPS-------AVSMK-----------PVRR-V---CFISAWGSPGARKARH 112 (426)
Q Consensus 61 ~~~~~~~vI--v~~g~~----vd~vl~~l~p~-------s~~~~-----------t~rr-~---~~v~~pVsGg~~gA~~ 112 (426)
++.- ...| .|=|++ .+++++++..+ |..|- +.|+ + .+=-++|-|.+.
T Consensus 80 a~~~-Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---- 154 (340)
T COG4007 80 AEHG-EIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---- 154 (340)
T ss_pred hhcc-eEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC----
Confidence 1111 2223 565644 35556666554 22221 1111 1 111233444332
Q ss_pred CCeEeecC---------CHHHHHHHHHHHHHhhcccCCCCcEEEeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043238 113 GPSLMPGG---------SFEAYNNIRDILQRVAAHVDDGPCITYIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVG 183 (426)
Q Consensus 113 G~slm~GG---------~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g 183 (426)
-.-...+| +++..+++..+.++.+ + ..|+=|..--..+-...-.+..-.++++.+-|...++-.
T Consensus 155 h~~yviagr~t~g~elATeEQi~r~velaes~G------k-~~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi 227 (340)
T COG4007 155 HGHYVIAGRSTEGKELATEEQIERCVELAESTG------K-EVYVLPADVVSAVADMGVLVTAVALSGVLDYYYVGTQII 227 (340)
T ss_pred CceEEEeccCCCceeeccHHHHHHHHHHHHhcC------C-ceEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222222 5788899999999999 3 455555433334444445555666777777777777544
Q ss_pred C
Q 043238 184 G 184 (426)
Q Consensus 184 ~ 184 (426)
|
T Consensus 228 ~ 228 (340)
T COG4007 228 G 228 (340)
T ss_pred C
Confidence 3
No 190
>PRK06823 ornithine cyclodeaminase; Validated
Probab=93.72 E-value=0.1 Score=52.38 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=37.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhC--CCeEEEEeCCccchHHHHHhc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEK--GFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~--G~~V~vynr~~~~~~~l~~~~ 49 (426)
...+++|||.|.++...++.+..- --+|.||||++++.+.|.+.-
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~ 173 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA 173 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH
Confidence 346899999999999999888743 348999999999999988643
No 191
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=93.71 E-value=0.078 Score=54.34 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.7
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEK--GFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~--G~~V~vynr~~~ 40 (426)
|+.+|.|||.|.+|.++|..|++. |++|+++++.+.
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 357999999999999999999998 999999998753
No 192
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.69 E-value=0.074 Score=55.53 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=33.4
Q ss_pred CcEEEEchhHHHHHHHH--HH----HhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLAL--NV----PEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~--nL----~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+....
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~ 47 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEI 47 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHH
Confidence 47999999999998666 44 4568899999999998776543
No 193
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.67 E-value=0.1 Score=51.52 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=40.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHhcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~~~ 50 (426)
.++-|+|.|-++++++..|++.|. +|+|+|||.++.++|.+...
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 569999999999999999999995 79999999999999987643
No 194
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.67 E-value=0.11 Score=51.81 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=51.1
Q ss_pred CCCcEEEEchh-HHHHHHHHHHHhCC---CeEEEEeCCccchHHHHHhccccCCCCcccccCCCC-----C--CcE---e
Q 043238 5 ALSRIGLAGLA-VMGQKLALNVPEKG---FQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH-----P--TPQ---I 70 (426)
Q Consensus 5 ~~~~IG~IGlG-~MG~~lA~nL~~~G---~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~--~vI---v 70 (426)
++.+|||||+| .++...+..+.+.+ .-|.++||++++.+++.+..... ..+.+++ | +.| +
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iat 75 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIAT 75 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcC
Confidence 56799999998 55567888888776 35889999999999988765321 2333433 2 333 6
Q ss_pred cCCchHHHHHhhcCCC
Q 043238 71 HHHRPLGETSGTSTPS 86 (426)
Q Consensus 71 ~~g~~vd~vl~~l~p~ 86 (426)
|+....+-++..|..+
T Consensus 76 p~~~H~e~~~~AL~aG 91 (342)
T COG0673 76 PNALHAELALAALEAG 91 (342)
T ss_pred CChhhHHHHHHHHhcC
Confidence 6666666665555443
No 195
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.67 E-value=0.086 Score=48.21 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=29.9
Q ss_pred cEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT 39 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~ 39 (426)
+|.|||+|.||+.++.+|++.|+ +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 599999886
No 196
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.63 E-value=0.074 Score=53.32 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=30.7
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~ 180 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG 180 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence 689999999999999999999999999999864
No 197
>PLN02306 hydroxypyruvate reductase
Probab=93.61 E-value=0.076 Score=54.79 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=30.9
Q ss_pred CcEEEEchhHHHHHHHHHHH-hCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVP-EKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~-~~G~~V~vynr~~~ 40 (426)
++|||||+|.+|+.+|+.|. .-|.+|.+||++..
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~ 200 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQS 200 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 68999999999999999986 67999999999864
No 198
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.56 E-value=0.12 Score=53.94 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
..++|.|+|.|.+|.++|..|++.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999985
No 199
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.51 E-value=0.093 Score=51.74 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=29.9
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
+|.|||.|.-|..+|+.|+++|++|.+++|.++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 7999999999999999999999999999997753
No 200
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.50 E-value=0.1 Score=53.28 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=35.2
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|.-.++.+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4555557899999999999999999999999999998753
No 201
>PRK06847 hypothetical protein; Provisional
Probab=93.35 E-value=0.1 Score=52.76 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=34.1
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|.. +.+|.|||.|.-|..+|..|.++|++|+|++++++
T Consensus 1 m~~--~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAA--VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCC--cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 553 45899999999999999999999999999998865
No 202
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.26 E-value=0.11 Score=44.84 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=29.0
Q ss_pred CcEEEEch-hHHHHHHHHHHHh-CCCe-EEEEeCCc
Q 043238 7 SRIGLAGL-AVMGQKLALNVPE-KGFQ-ISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~-~G~~-V~vynr~~ 39 (426)
++|+|+|. |.||+.++..+.+ .|++ |.+.+|++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 48999999 9999999999998 7787 56778887
No 203
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=93.15 E-value=0.11 Score=52.98 Aligned_cols=38 Identities=26% Similarity=0.564 Sum_probs=34.6
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
|+.+. .+|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 1 ~~~~~-~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 1 MTNQP-TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred CCccc-ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 66666 489999999999999999999999999999875
No 204
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.15 E-value=0.14 Score=53.18 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=39.7
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~ 50 (426)
.+|+|+|.|.+|..+|..+...|.+|.++|+++.+.+...+.|.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~ 246 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY 246 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC
Confidence 57999999999999999999999999999999999877766654
No 205
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.14 E-value=0.11 Score=53.39 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.7
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|+|.|||.|.+|.+.|..|+++|++|+|+++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4799999999999999999999999999999754
No 206
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.14 E-value=0.13 Score=53.26 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=38.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
.++|+|||+|.+|..+|..+...|.+|.|+++++.+.......|
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G 238 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG 238 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC
Confidence 45899999999999999999999999999999998765555444
No 207
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.14 E-value=0.12 Score=52.50 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=31.6
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 3799999999999999999999999999999754
No 208
>PRK05868 hypothetical protein; Validated
Probab=93.07 E-value=0.11 Score=53.07 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
|++|.|||.|.-|..+|..|+++|++|+|+++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999998763
No 209
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.03 E-value=0.17 Score=47.36 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
|...+.+.|-|+| .|..|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 1 m~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (237)
T PRK07326 1 MMSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAE 49 (237)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHH
Confidence 5444456788887 59999999999999999999999999887766543
No 210
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.03 E-value=0.16 Score=39.05 Aligned_cols=30 Identities=17% Similarity=0.524 Sum_probs=27.5
Q ss_pred EEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 11 LAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 11 ~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|||.|.-|...|..|+++|++|.+++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998865
No 211
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.03 E-value=0.14 Score=55.38 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=40.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
..+|-|+|+|.+|+.+|+.|.++|++|.+.|.++++++++.+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g 460 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERG 460 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCC
Confidence 46799999999999999999999999999999999999987654
No 212
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.02 E-value=0.16 Score=53.46 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
.++|.|||+|..|.+.|+-|.+.|++|+++|+.+.....+.+.+
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g 52 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG 52 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC
Confidence 35799999999999999999999999999998765444444434
No 213
>PRK06185 hypothetical protein; Provisional
Probab=92.99 E-value=0.13 Score=52.78 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|-..+..+|-|||.|..|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4455667999999999999999999999999999998753
No 214
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.96 E-value=0.13 Score=44.75 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=30.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSK 41 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~ 41 (426)
.++|.|+|+|..|+.+|.+|+..|. +++++|.+.=.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 3589999999999999999999998 79999977543
No 215
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.96 E-value=0.12 Score=52.11 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++.+|.|||.|.+|.++|..|++.|++|++.+|..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 34579999999999999999999999999999875
No 216
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.95 E-value=0.091 Score=49.66 Aligned_cols=35 Identities=17% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~ 39 (426)
...+|.|||+|.||+.+|.+|++.|. +++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34689999999999999999999997 599999884
No 217
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.94 E-value=0.12 Score=54.41 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=34.9
Q ss_pred ccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 3 ASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 3 ~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..+.+++.|||+|.-|-+.|++|.+.|++|+++.|+.+
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 45678999999999999999999999999999999875
No 218
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.94 E-value=0.16 Score=53.77 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=35.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDET 45 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l 45 (426)
+++|.|+|+|..|.++|+-|.++|++|+++|++.....++
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~ 54 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKL 54 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHH
Confidence 4579999999999999999999999999999987665544
No 219
>PRK06046 alanine dehydrogenase; Validated
Probab=92.91 E-value=0.16 Score=51.21 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=37.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhC-C-CeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEK-G-FQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~-G-~~V~vynr~~~~~~~l~~~ 48 (426)
..+|||||+|.||...+.+|... + ..|.+|||++++.+++.+.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~ 173 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVER 173 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHH
Confidence 45799999999999999999843 3 4799999999999988865
No 220
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.90 E-value=0.1 Score=48.83 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~ 40 (426)
..++|.|||+|.+|+.+|.+|+..|. +++++|.+.-
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 34689999999999999999999997 8999998853
No 221
>PLN02494 adenosylhomocysteinase
Probab=92.90 E-value=0.16 Score=53.58 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=37.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
++|+|+|+|.+|+.+|..+...|.+|.++++++.+.......+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G 297 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG 297 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC
Confidence 5799999999999999999999999999999998765544444
No 222
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.89 E-value=0.13 Score=49.90 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=34.6
Q ss_pred EEEEch-hHHHHHHHHHHHhCC----CeEEEEeCCccchHHHHH
Q 043238 9 IGLAGL-AVMGQKLALNVPEKG----FQISVYNRTTSKVDETLD 47 (426)
Q Consensus 9 IG~IGl-G~MG~~lA~nL~~~G----~~V~vynr~~~~~~~l~~ 47 (426)
|+|||. |.||..+|..|+..| .+|.+||+++++.+....
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~ 44 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAM 44 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHH
Confidence 689999 999999999999999 799999999988766543
No 223
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.88 E-value=0.1 Score=54.66 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
|+.-.+++|.|+|||.-|.++|+.|.+.|.+|++||.++..
T Consensus 2 ~~~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 2 MEDFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cccccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 34445789999999999999999999999999999977765
No 224
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.86 E-value=0.2 Score=47.14 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=39.9
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|+-..++++-|.| .|.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAA 48 (241)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6666777788887 5999999999999999999999999987766654
No 225
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.77 E-value=0.13 Score=52.74 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=32.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..+|.|||.|.-|..+|..|+++|++|.++++.++
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 46899999999999999999999999999998864
No 226
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.74 E-value=0.17 Score=53.31 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=38.2
Q ss_pred CCccCCCcEEEEchhHHHHH-HHHHHHhCCCeEEEEeCCcc-chHHHHHhc
Q 043238 1 MEASALSRIGLAGLAVMGQK-LALNVPEKGFQISVYNRTTS-KVDETLDRA 49 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~-lA~nL~~~G~~V~vynr~~~-~~~~l~~~~ 49 (426)
|.....++|.|||+|..|.+ +|+-|.++|++|+++|.... ..+++.+.+
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g 52 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG 52 (461)
T ss_pred CCcCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC
Confidence 44555668999999999999 89999999999999997654 334444433
No 227
>PRK07045 putative monooxygenase; Reviewed
Probab=92.73 E-value=0.14 Score=52.31 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=34.8
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
|+... .+|.|||.|..|...|..|+++|++|+++++.++.
T Consensus 1 ~~~~~-~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 1 MKNNP-VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCCce-eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 55333 48999999999999999999999999999988753
No 228
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.72 E-value=0.11 Score=52.11 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=40.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHh-CC-CeEEEEeCCccchHHHHHhccccCCCCcccccCCCC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPE-KG-FQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~-~G-~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 65 (426)
..++||||.|..+..-+..|.. .+ -+|.||||+++++++|.+.-... +..+..+.+++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~--~~~v~~~~~~~ 187 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL--GVPVVAVDSAE 187 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC--CTCEEEESSHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc--cccceeccchh
Confidence 3579999999999999988865 33 48999999999999998764331 23566666654
No 229
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.72 E-value=0.13 Score=52.76 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=31.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
..+|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3579999999999999999999999999999876
No 230
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.71 E-value=0.17 Score=50.00 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=38.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~ 48 (426)
+++-|+|.|-.|++++..|++.|. +|+++||+.++.+++.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 579999999999999999999996 799999999999988764
No 231
>PRK06753 hypothetical protein; Provisional
Probab=92.67 E-value=0.13 Score=51.93 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=32.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|+|.|||.|.-|..+|..|+++|++|+++.|+++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4899999999999999999999999999999875
No 232
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=92.63 E-value=0.15 Score=52.47 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=33.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|..+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 456899999999999999999999999999999874
No 233
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.62 E-value=0.18 Score=50.84 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=39.0
Q ss_pred CccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcc
Q 043238 2 EASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 2 ~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~ 50 (426)
++-+-++|||+|+|.+|+.+|.+|..-|..+.-++|++...+...+.++
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence 4455678999999999999999999988566667887777776665544
No 234
>PRK08017 oxidoreductase; Provisional
Probab=92.56 E-value=0.21 Score=47.40 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=36.6
Q ss_pred CCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 6 LSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 356888987 999999999999999999999999988776543
No 235
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.51 E-value=0.23 Score=45.02 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=33.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
+++.|+|.|..|+.+|+.|...|-+|+|++++|-+.-+....|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG 66 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG 66 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC
Confidence 4699999999999999999999999999999997765544444
No 236
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.49 E-value=0.18 Score=47.99 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=34.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhC--CC-eEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEK--GF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~--G~-~V~vynr~~~~~~~l~~~ 48 (426)
++||+||+|.+|..+..-+.+. .+ .|.+|||+.+++.++.+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~ 45 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS 45 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh
Confidence 4799999999999998877643 34 589999999999888764
No 237
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=92.48 E-value=0.17 Score=54.45 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=35.2
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|...+..+|.|||.|..|..+|..|+++|++|.++++.++
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3445566899999999999999999999999999998864
No 238
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=92.42 E-value=0.15 Score=51.48 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=31.2
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+|.|||.|.-|..+|..|+++|++|+||+|.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 589999999999999999999999999999975
No 239
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=92.28 E-value=0.16 Score=52.31 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=34.5
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
+|+.+|.|||.|.-|+..|..|+++|++|.++++..+.
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~ 38 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 36679999999999999999999999999999997654
No 240
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.28 E-value=0.17 Score=51.47 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhC---CCeEEEEeCC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEK---GFQISVYNRT 38 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~---G~~V~vynr~ 38 (426)
++.+|.|||.|..|..+|..|+++ |++|.+++|.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 446899999999999999999998 9999999994
No 241
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.25 E-value=0.21 Score=50.02 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC--eEEEEeCCccchHHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF--QISVYNRTTSKVDETL 46 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~--~V~vynr~~~~~~~l~ 46 (426)
.+||+|||.|.+|+++|..|+..|. ++.++|+++++++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a 45 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEA 45 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHH
Confidence 3589999999999999999998885 7999999988765443
No 242
>PRK09126 hypothetical protein; Provisional
Probab=92.21 E-value=0.18 Score=51.42 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=32.8
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|..+|.|||.|.-|..+|..|+++|++|++++|.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 346899999999999999999999999999998764
No 243
>PRK06126 hypothetical protein; Provisional
Probab=92.18 E-value=0.19 Score=53.86 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=33.9
Q ss_pred ccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 3 ASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 3 ~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..+..+|.|||.|..|..+|..|+++|++|.+++|.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 34456899999999999999999999999999998764
No 244
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.16 E-value=0.27 Score=48.64 Aligned_cols=42 Identities=12% Similarity=0.308 Sum_probs=35.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCe-EEEEeCCc---cchHHHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQ-ISVYNRTT---SKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~-V~vynr~~---~~~~~l~~ 47 (426)
.+++-|+|.|-.|++++..|++.|.+ |+++||+. ++.+++.+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~ 171 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAE 171 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHH
Confidence 34688999999999999999999986 99999997 66666654
No 245
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.15 E-value=0.22 Score=51.94 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=40.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
+++|-|+|+|.+|..++..|.+.|++|++.++++++.+++.+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~ 274 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL 274 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC
Confidence 46899999999999999999999999999999999998887653
No 246
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.10 E-value=0.28 Score=44.11 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=33.3
Q ss_pred EEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHH
Q 043238 9 IGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDE 44 (426)
Q Consensus 9 IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~ 44 (426)
|-|+|. |.+|+.++..|+++|++|++..|++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 578884 999999999999999999999999998876
No 247
>PRK07588 hypothetical protein; Provisional
Probab=92.10 E-value=0.17 Score=51.59 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=31.7
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4799999999999999999999999999998764
No 248
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.09 E-value=0.19 Score=49.65 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=29.8
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
+|.|||.|..|...|..|++.|++|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 5899999999999999999999999999988
No 249
>PRK07538 hypothetical protein; Provisional
Probab=92.03 E-value=0.18 Score=52.11 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=32.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|+|.|||.|.-|..+|..|.++|++|++++|.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999999874
No 250
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.99 E-value=0.26 Score=47.91 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=34.4
Q ss_pred CCccCCCcEEEE-chh---HHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 1 MEASALSRIGLA-GLA---VMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 1 m~~~~~~~IG~I-GlG---~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
||..|+.|+.+| |.+ -+|.++|+.|++.|++|.+.+|+.+.
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~ 45 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL 45 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH
Confidence 788887677666 765 69999999999999999999887643
No 251
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.92 E-value=0.18 Score=48.06 Aligned_cols=38 Identities=18% Similarity=0.527 Sum_probs=34.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVD 43 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~ 43 (426)
..||||+|-|..|+.-|.-+++.||+|..||..++.+.
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~ 40 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQ 40 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHH
Confidence 46899999999999999999999999999999987643
No 252
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.91 E-value=0.2 Score=50.63 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=34.1
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
.++++|.|||-|.+|.+.|..|+++|++|++.++....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 45678999999999999999999999999999977643
No 253
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.80 E-value=0.34 Score=45.72 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=38.8
Q ss_pred CCccCCCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|.+.+.+++-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~ 48 (250)
T PRK07774 1 MGRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAK 48 (250)
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56655667778876 999999999999999999999999877665543
No 254
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=91.69 E-value=0.31 Score=45.80 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=38.4
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|...+.++|-|.| .|..|..+++.|+++|++|.+.+|++++...+.+
T Consensus 1 ~~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 1 TRDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CCCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4445556788887 7999999999999999999999999877665543
No 255
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.68 E-value=0.25 Score=54.00 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=40.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
..+|-|+|.|.+|+.+++.|.++|++|++.|.++++++.+.+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g 443 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYG 443 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCC
Confidence 46899999999999999999999999999999999999887654
No 256
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=91.68 E-value=0.2 Score=50.73 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=31.3
Q ss_pred cEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSK 41 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~ 41 (426)
+|.|||.|..|..+|..|+++| ++|++++|.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 5889999999999999999999 999999998653
No 257
>PRK08013 oxidoreductase; Provisional
Probab=91.67 E-value=0.24 Score=50.99 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=32.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.+|.|||.|..|..+|..|+++|++|.++++.++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5899999999999999999999999999999875
No 258
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=91.65 E-value=0.24 Score=49.25 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=34.8
Q ss_pred EEEEchhHHHHHHHHHHHhCC--CeEEEEeCCccchHHHHH
Q 043238 9 IGLAGLAVMGQKLALNVPEKG--FQISVYNRTTSKVDETLD 47 (426)
Q Consensus 9 IG~IGlG~MG~~lA~nL~~~G--~~V~vynr~~~~~~~l~~ 47 (426)
|+|||.|.+|+++|..|+.+| .++.++|+++++++....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~ 41 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDAL 41 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHH
Confidence 689999999999999999999 689999999998776553
No 259
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=91.64 E-value=0.24 Score=52.21 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+.+|.|||.|.-|...|..|+++|++|.++++.+.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 35899999999999999999999999999998754
No 260
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.60 E-value=0.25 Score=50.76 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=32.4
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..+|.|||.|.-|..+|..|+++|++|+++++.++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35899999999999999999999999999998865
No 261
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=91.59 E-value=0.19 Score=51.48 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=32.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
+.+|.|||.|.-|..+|..|+++|++|+++++.+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 5689999999999999999999999999999983
No 262
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.54 E-value=0.19 Score=46.40 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=35.8
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDET 45 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l 45 (426)
|||+|||. |..|+.|+.-..++||+|+..-|+++|+..+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~ 40 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR 40 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc
Confidence 68999985 9999999999999999999999999998654
No 263
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.39 E-value=0.23 Score=50.56 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=31.4
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
|.+|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 3589999999999999999999999999999863
No 264
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.38 E-value=0.39 Score=45.59 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=37.7
Q ss_pred CCccCCCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 1 MEASALSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 1 m~~~~~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
|.+.+.+++-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 2 MSNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 33333445666665 9999999999999999999999999877776654
No 265
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.36 E-value=0.24 Score=52.11 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|+|+|+|.-|.++|+-|.++|++|+++|+++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 35899999999999999999999999999998753
No 266
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.33 E-value=0.24 Score=50.69 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=33.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|..+|.|||.|.-|..+|..|+++|++|.++++.+.
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 356899999999999999999999999999999874
No 267
>PRK07589 ornithine cyclodeaminase; Validated
Probab=91.22 E-value=0.32 Score=49.49 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=42.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHh--CCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPE--KGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH 65 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~--~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 65 (426)
...+++|||.|..+...++.+.. .=.+|.||||++++.++|.+.-...+ .++..+.+++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~--~~v~~~~~~~ 188 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG--LRIVACRSVA 188 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC--CcEEEeCCHH
Confidence 34679999999999988877764 33589999999999999886543211 1344455544
No 268
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=91.12 E-value=0.33 Score=47.70 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=38.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l~~~ 48 (426)
.++-|+|.|-.+++++..|++.|. +|+++||++++.+.+.+.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~ 165 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999997 599999999999988764
No 269
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.04 E-value=0.28 Score=49.71 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~ 39 (426)
..++|.|||+|..|+.+|.+|++.|+ ++++.|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34689999999999999999999998 899999985
No 270
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.03 E-value=0.28 Score=48.67 Aligned_cols=19 Identities=16% Similarity=0.044 Sum_probs=12.4
Q ss_pred CCchHHHHHhhhhcccccc
Q 043238 370 RLPANLVQAQRDLFGAHAY 388 (426)
Q Consensus 370 ~l~~nliqaqrD~fgah~~ 388 (426)
.+|.-.+.+...||-.-+.
T Consensus 256 g~p~P~~~~al~~~~~~~~ 274 (298)
T TIGR00872 256 GVPAPVIATSLQSRFASRD 274 (298)
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4787788877766654333
No 271
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=91.01 E-value=0.28 Score=51.23 Aligned_cols=37 Identities=16% Similarity=0.440 Sum_probs=33.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
|+++|-|||.|..|...|..|++.|++|.++++.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 4578999999999999999999999999999976543
No 272
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.00 E-value=0.25 Score=54.45 Aligned_cols=33 Identities=24% Similarity=0.555 Sum_probs=31.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.+|.|||.|.+|.++|..|+++|++|+|+++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 489999999999999999999999999999874
No 273
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.00 E-value=0.34 Score=48.42 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=33.6
Q ss_pred cEEEEchhHHHHHHHHHHHhCCC--eEEEEeCCccchHHH
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGF--QISVYNRTTSKVDET 45 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~--~V~vynr~~~~~~~l 45 (426)
||+|||.|..|+.+|..|+.+|. ++.++|+++++++..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~ 40 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGE 40 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHH
Confidence 69999999999999999998886 799999998876543
No 274
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.94 E-value=0.46 Score=44.31 Aligned_cols=42 Identities=14% Similarity=0.292 Sum_probs=35.7
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+++|-|.| .|.+|..++..|+++|++|.+.+|++++.+.+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 47 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAA 47 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence 35788887 5999999999999999999999999987665543
No 275
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=90.90 E-value=0.26 Score=47.86 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=31.6
Q ss_pred CcEEEEch-hHHHHHHHHHHHhC-CCeE-EEEeCCccchHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEK-GFQI-SVYNRTTSKVDET 45 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~-G~~V-~vynr~~~~~~~l 45 (426)
++|+|||+ |.||+.++..+.+. +++| .++|+++++....
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~ 43 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ 43 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc
Confidence 68999998 99999999988864 6775 5689998766543
No 276
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.88 E-value=0.47 Score=45.21 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=37.4
Q ss_pred CCccCCCcEEEE--chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 1 MEASALSRIGLA--GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 1 m~~~~~~~IG~I--GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
|...+..+..+| |.|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 1 ~~~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~ 50 (260)
T PRK07063 1 MMNRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAA 50 (260)
T ss_pred CCcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 344444455555 568999999999999999999999999887776654
No 277
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.88 E-value=0.27 Score=49.69 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=29.9
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
+|.|||.|.+|.+.|..|+++|.+|++.++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 69999999999999999999999999998853
No 278
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.86 E-value=0.41 Score=47.92 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=32.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC--eEEEEeCCccchHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF--QISVYNRTTSKVDE 44 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~--~V~vynr~~~~~~~ 44 (426)
+||+|||.|..|+++|..|+..++ ++.+||+..++.+-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G 40 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEG 40 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccc
Confidence 489999999999999999988775 79999999666543
No 279
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.85 E-value=0.47 Score=45.48 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=38.7
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
|.+...+++=|.| .|-+|..+|+.|+++|++|++.+|+.++.+++.+.
T Consensus 1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (261)
T PRK08265 1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS 49 (261)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 6655555666666 48999999999999999999999998877776543
No 280
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=90.84 E-value=0.27 Score=50.70 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=31.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~ 40 (426)
++|.|||.|.-|.++|..|.++| ++|+||+|.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 47999999999999999999998 49999999876
No 281
>PRK06199 ornithine cyclodeaminase; Validated
Probab=90.79 E-value=0.36 Score=49.69 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=37.9
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhC--C-CeEEEEeCCccchHHHHHhc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEK--G-FQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~--G-~~V~vynr~~~~~~~l~~~~ 49 (426)
....+||||.|.++...++.++.- . -+|.||||++++.++|.+.-
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~ 201 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWV 201 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH
Confidence 346899999999999999998762 2 48999999999999988653
No 282
>PRK08703 short chain dehydrogenase; Provisional
Probab=90.73 E-value=0.45 Score=44.72 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=38.6
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|.....++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 1 ~~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (239)
T PRK08703 1 MATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD 48 (239)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH
Confidence 5555556677776 5899999999999999999999999987776654
No 283
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.71 E-value=0.4 Score=49.97 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|.|+|+|.+|.++|+.|++.|++|+++|++..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 35799999999999999999999999999998764
No 284
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.66 E-value=0.4 Score=45.82 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHH
Q 043238 5 ALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDET 45 (426)
Q Consensus 5 ~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l 45 (426)
.+++|-|+| .|.+|+.++..|+++|++|++..|++++...+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 456899999 59999999999999999999999998875543
No 285
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.64 E-value=0.4 Score=51.60 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=38.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++-|+|.|-+|++++..|++.|.+|+++||+.++.+.+.+.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADA 421 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 468899999999999999999999999999999998888754
No 286
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=90.59 E-value=0.34 Score=49.65 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=34.1
Q ss_pred EEEEchhHHHHHHHHHHHhCC-C-eEEEEeCCccchHHHHHh
Q 043238 9 IGLAGLAVMGQKLALNVPEKG-F-QISVYNRTTSKVDETLDR 48 (426)
Q Consensus 9 IG~IGlG~MG~~lA~nL~~~G-~-~V~vynr~~~~~~~l~~~ 48 (426)
|.|||.|.||+.++..|++++ + +|++.+|+.++.+++.+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~ 42 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK 42 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh
Confidence 789999999999999999987 4 899999999999988753
No 287
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.41 E-value=0.43 Score=50.72 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=36.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
++|.|+|+|..|.+.++-|.+.|++|+++|+.++..+.+.+.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g 55 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERG 55 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCC
Confidence 5799999999999999999999999999998877666554433
No 288
>PRK05993 short chain dehydrogenase; Provisional
Probab=90.37 E-value=0.53 Score=45.63 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 5 ALSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 5 ~~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|++.|-|.|. |.+|.++|+.|+++|++|.+.+|++++.+++.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3446777776 999999999999999999999999988877654
No 289
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=90.36 E-value=0.32 Score=52.34 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=29.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
++|+|||.|.-|-.-+++|.+.|++|++|.++++-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence 58999999999999999999999999999998763
No 290
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.34 E-value=0.37 Score=48.91 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=34.2
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
.|..+|.|||.|.-|..+|..|++.|++|+++++.+..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 35568999999999999999999999999999988763
No 291
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.33 E-value=0.42 Score=47.42 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=34.5
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
|+|-|+| .|..|+.++..|+++||+|.+..|++++...+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~ 41 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK 41 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh
Confidence 4799998 699999999999999999999999987654443
No 292
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=90.32 E-value=0.34 Score=48.83 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=30.2
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
+|.|||.|.+|.+.|..|++.|++|++.++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 68999999999999999999999999999864
No 293
>PLN02602 lactate dehydrogenase
Probab=90.31 E-value=0.42 Score=48.68 Aligned_cols=39 Identities=10% Similarity=0.368 Sum_probs=34.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC--eEEEEeCCccchHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF--QISVYNRTTSKVDET 45 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~--~V~vynr~~~~~~~l 45 (426)
+||+|||.|..|+.+|..|+..|. ++.++|+++++++..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~ 78 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGE 78 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHH
Confidence 599999999999999999998885 799999998876544
No 294
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=90.28 E-value=0.38 Score=48.40 Aligned_cols=34 Identities=15% Similarity=0.421 Sum_probs=29.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhC-CCeEE-EEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEK-GFQIS-VYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~-G~~V~-vynr~~ 39 (426)
+.+|||||+|.||+.++..+.++ ++++. +|+|++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 36899999999999999999866 78764 689986
No 295
>PLN02985 squalene monooxygenase
Probab=90.23 E-value=0.38 Score=51.56 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=32.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..+|.|||.|..|..+|..|+++|++|.+++|++.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 35899999999999999999999999999999753
No 296
>PTZ00367 squalene epoxidase; Provisional
Probab=90.18 E-value=0.38 Score=52.24 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=32.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
+..+|.|||.|..|.++|..|+++|++|.+++|++
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 44589999999999999999999999999999986
No 297
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=90.12 E-value=0.39 Score=48.51 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=42.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHh--CCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPE--KGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLH 65 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~--~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 65 (426)
...+||||.|.++.-.+..+.. ..-+|.||+|+++..+++.+...... +..+..+.+.+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-~~~v~a~~s~~ 190 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-GEAVGAADSAE 190 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-CccceeccCHH
Confidence 3579999999999999988874 34589999999999999885432221 12344555544
No 298
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=90.10 E-value=0.42 Score=49.82 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=34.2
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|++++ .+|-|||.|.-|...|..|+++|++|.+.+|.+.
T Consensus 1 m~~~~-~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 1 MSEDI-FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred CCccc-CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 65433 5899999999999999999999999999998754
No 299
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=90.09 E-value=0.38 Score=53.11 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=33.2
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++..+|.|||.|..|..+|..|.++|++|.||+|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 455789999999999999999999999999999975
No 300
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=90.07 E-value=0.42 Score=51.32 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=33.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+..+|.|||.|.-|..+|..|+++|++|.+++|.++
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 356899999999999999999999999999999874
No 301
>PRK06194 hypothetical protein; Provisional
Probab=90.02 E-value=0.6 Score=45.17 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|++...++|=|.| .|-+|+.+|+.|+++|++|.+.+|+.++.++..+
T Consensus 1 m~~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (287)
T PRK06194 1 MKDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVA 48 (287)
T ss_pred CcCCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 6655555566665 6899999999999999999999999887666554
No 302
>PRK06444 prephenate dehydrogenase; Provisional
Probab=90.00 E-value=0.31 Score=45.57 Aligned_cols=108 Identities=7% Similarity=-0.033 Sum_probs=65.1
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE--ecCCchHHHHHhhc
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ--IHHHRPLGETSGTS 83 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI--v~~g~~vd~vl~~l 83 (426)
|+|+|||- |.||+-++..|.+.||.|++. . + +.+| +|... +.++++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~~----------------~--------~----DlVilavPv~~-~~~~i~~~ 51 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYIK----------------K--------A----DHAFLSVPIDA-ALNYIESY 51 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEEC----------------C--------C----CEEEEeCCHHH-HHHHHHHh
Confidence 48999988 999999999999999998620 0 1 2233 55543 45566665
Q ss_pred CCC-----ccccchhhh-hhccc-cCCCCChhhhhc---CCeEee--cCCHHHHHHHHHHHHHhhcccCCCCcEEEeCCC
Q 043238 84 TPS-----AVSMKPVRR-VCFIS-AWGSPGARKARH---GPSLMP--GGSFEAYNNIRDILQRVAAHVDDGPCITYIGEG 151 (426)
Q Consensus 84 ~p~-----s~~~~t~rr-~~~v~-~pVsGg~~gA~~---G~slm~--GG~~~a~~~v~~iL~~iaa~~~~~~~v~~vG~~ 151 (426)
.+. |.-....+. ..||+ .|+.| +..+.. ++.+++ ..++++.+.++.+++ + ..+..+-+.
T Consensus 52 ~~~v~Dv~SvK~~i~~~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G------~~~~~~t~e 122 (197)
T PRK06444 52 DNNFVEISSVKWPFKKYSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEINEMFR--G------YHFVEMTAD 122 (197)
T ss_pred CCeEEeccccCHHHHHhcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHHHHHc--C------CEEEEeCHH
Confidence 543 221111111 56786 48886 433333 233333 345566777878777 5 356677654
Q ss_pred c
Q 043238 152 G 152 (426)
Q Consensus 152 G 152 (426)
.
T Consensus 123 e 123 (197)
T PRK06444 123 E 123 (197)
T ss_pred H
Confidence 3
No 303
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.93 E-value=0.41 Score=48.89 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=31.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.+|.|||.|.-|..+|..|+++|++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 589999999999999999999999999999764
No 304
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=89.89 E-value=0.4 Score=49.25 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=30.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
.+|.|||.|..|..+|..|+++|++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 48999999999999999999999999999985
No 305
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.88 E-value=0.64 Score=43.67 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=37.5
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|.....++|-|+| .|.+|..+|+.|+++|++|.+.+|++++.+.+.+
T Consensus 2 ~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (250)
T PRK12939 2 ASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAA 49 (250)
T ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3333346677777 4999999999999999999999999887776654
No 306
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.78 E-value=0.57 Score=36.65 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.0
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccch
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKV 42 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~ 42 (426)
+|.|||-|..|.-+|..|++.|.+|++..|++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58899999999999999999999999999987643
No 307
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.77 E-value=0.45 Score=45.28 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=31.6
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~ 40 (426)
..++|.|||+|..|+.+|.+|+..|. +++++|.+.=
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 34689999999999999999999997 7899987653
No 308
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=89.76 E-value=0.25 Score=51.74 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=29.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
.++|+|||+|..|.+.|.||...|++|++--|.
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~ 68 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRK 68 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccc
Confidence 368999999999999999999999999966655
No 309
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.73 E-value=0.83 Score=46.26 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcccc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHRE 52 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~ 52 (426)
-.+|+|+|+|-.|..-..-....|.+|++++|+++|.+...+.|+..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~ 213 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH 213 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE
Confidence 35799999886665444444448999999999999999888888754
No 310
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=89.69 E-value=0.67 Score=44.31 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEE-EEeC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQIS-VYNR 37 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~-vynr 37 (426)
+.++|.|.|+|.+|+.+|+.|.+.|.+|+ |-|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 45689999999999999999999999987 6676
No 311
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=89.58 E-value=0.47 Score=51.20 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=32.0
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
.+..+|.|||.|.+|.++|+.|++.|++|++.++.
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 34568999999999999999999999999999985
No 312
>PRK08244 hypothetical protein; Provisional
Probab=89.58 E-value=0.43 Score=50.51 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..+|.|||.|.-|..+|..|+++|++|.++++.++
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46899999999999999999999999999998765
No 313
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.57 E-value=0.44 Score=50.70 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=34.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc--chHHHHHh
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS--KVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~--~~~~l~~~ 48 (426)
.++|.|||+|..|.++|+-|.++|++|+++|.... ..+.+.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~ 51 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAE 51 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhh
Confidence 35799999999999999999999999999997653 23444443
No 314
>PRK06914 short chain dehydrogenase; Provisional
Probab=89.50 E-value=0.65 Score=44.76 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=33.4
Q ss_pred EEEE-chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 9 IGLA-GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 9 IG~I-GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+-|. |.|.+|..++..|+++|++|.+.+|++++.+.+.+.
T Consensus 6 ~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 46 (280)
T PRK06914 6 AIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQ 46 (280)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 4444 479999999999999999999999999887776543
No 315
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.50 E-value=0.5 Score=49.95 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=32.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|+|||.|.-|-..|+.|++.|++|++|.++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 36899999999999999999999999999998865
No 316
>PRK06500 short chain dehydrogenase; Provisional
Probab=89.42 E-value=0.7 Score=43.46 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|.+.+.++|-|.| .|.+|..+++.|+++|++|.+.+|+.++.+++.+
T Consensus 1 m~~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 1 MSRLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA 48 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 5544445677776 4999999999999999999999999877766554
No 317
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.40 E-value=0.52 Score=51.73 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=40.4
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
..+|=|+|.|.+|+.+++.|.++|+++++-|.++++++.+.+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g 443 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFG 443 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcC
Confidence 45799999999999999999999999999999999999987654
No 318
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.38 E-value=0.4 Score=48.63 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~ 40 (426)
..++|.|||+|..|+.+|.+|++.|. +|++.|.+.-
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 35689999999999999999999998 8999999753
No 319
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.20 E-value=0.63 Score=46.09 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=36.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc---cchHHHHHh
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT---SKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~---~~~~~l~~~ 48 (426)
+++-|||.|-.+++++..|+..|. +|+++||++ ++.+.+.+.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~ 170 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQR 170 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHH
Confidence 478999999999999999999996 899999995 477777654
No 320
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=89.10 E-value=0.51 Score=48.57 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=37.5
Q ss_pred CcEEEEchhHHHHHH-HHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKL-ALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~l-A~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
|||.++|.|.||++. ..-|.+.|++|++-|++++.++.+.++|
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qg 44 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRK 44 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCC
Confidence 589999999999966 6777789999999999999999888774
No 321
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=89.09 E-value=0.49 Score=47.92 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=33.1
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSK 41 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~ 41 (426)
..++|-|||.|-||.-.+.+|.++|. +|++.||+.+.
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~ 210 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT 210 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 34689999999999999999999995 69999999864
No 322
>PRK08328 hypothetical protein; Provisional
Probab=88.95 E-value=0.45 Score=45.53 Aligned_cols=41 Identities=15% Similarity=0.373 Sum_probs=34.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHHH
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDET 45 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~l 45 (426)
...+|.|||+|-.|+.++.+|+..|. +++++|.+.-....+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL 67 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNL 67 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhh
Confidence 34689999999999999999999996 799998776554444
No 323
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.94 E-value=0.59 Score=48.89 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
|+-. .++|.|+|.|..|.+.|+-|+++|++|+++|.++..
T Consensus 1 ~~~~-~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 1 MTFQ-NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCCC-CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 5633 458999999999999999999999999999987653
No 324
>PRK07024 short chain dehydrogenase; Provisional
Probab=88.93 E-value=0.73 Score=43.93 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=35.9
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++|=|.| .|.+|..++..|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 45 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAAR 45 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 45666665 88999999999999999999999999887766543
No 325
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.88 E-value=0.38 Score=44.93 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~ 39 (426)
..++|.|||+|..|+.++.||+..|. +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35689999999999999999999997 699998764
No 326
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=88.85 E-value=0.49 Score=49.21 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=30.6
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+|.|||+|..|.++|+-|.++|++|+++|..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 589999999999999999999999999998654
No 327
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=88.78 E-value=0.4 Score=44.78 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.6
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~ 40 (426)
..++|.|||+|..|+.++.||+..|. +++++|.+.-
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 34689999999999999999999997 6999997753
No 328
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=88.78 E-value=0.64 Score=45.38 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=25.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhC-CCeE-EEEeCC
Q 043238 7 SRIGLAGLAVMGQKLALNVPEK-GFQI-SVYNRT 38 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~-G~~V-~vynr~ 38 (426)
++|||||+|.||+.++..+.+. +.++ .++++.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~ 35 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE 35 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC
Confidence 5899999999999999999876 4554 455543
No 329
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=88.71 E-value=0.87 Score=42.61 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=38.8
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|.+...+++-|.| .|..|..++..|+++|+.|.+.+|+.++.+++.+
T Consensus 1 ~~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~ 48 (245)
T PRK12936 1 MFDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAA 48 (245)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 6655556677776 7999999999999999999999999888776654
No 330
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=88.66 E-value=0.85 Score=43.26 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=32.7
Q ss_pred EEEE-chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 9 IGLA-GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 9 IG~I-GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+=|. |.|.+|.++|..|+++|++|.+.+|++++.+++.+
T Consensus 12 ~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~ 51 (254)
T PRK08085 12 ILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVA 51 (254)
T ss_pred EEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4444 46899999999999999999999999888776654
No 331
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=88.64 E-value=0.56 Score=48.14 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred CcEEEEchhHHHHHHHHHHHhC-CC-eEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEK-GF-QISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~-G~-~V~vynr~~ 39 (426)
.+|.|||.|.+|.++|..|++. |. +|++.+|..
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 4899999999999999999985 95 999999863
No 332
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.57 E-value=0.87 Score=43.21 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=34.8
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++|-|.| .|..|.++|..|+++|++|.+.+|++++.+++.+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAE 52 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4677776 5999999999999999999999999887766554
No 333
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.54 E-value=0.42 Score=45.83 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=34.1
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHH
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDE 44 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~ 44 (426)
-..++|.|||+|-.|+.++.+|++.|. +++++|.+.=....
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sN 50 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSN 50 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchh
Confidence 345789999999999999999999997 89999877644333
No 334
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.51 E-value=0.54 Score=49.23 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.7
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+|.|||+|..|.+.|+.|+++|++|+++|+.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 689999999999999999999999999998754
No 335
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.47 E-value=0.73 Score=43.18 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc-chHHHHH
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS-KVDETLD 47 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~-~~~~l~~ 47 (426)
..++|-|||.|.||...+..|.+.|.+|+|.+++.. .+.++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~ 52 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVE 52 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHh
Confidence 346899999999999999999999999999987653 2344443
No 336
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=88.46 E-value=0.64 Score=50.56 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|++.++++|||||-|..|..|+....+.|++|.++|.+++
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4566778999999999999999999999999999998875
No 337
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.41 E-value=0.88 Score=41.13 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=38.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~ 50 (426)
.+|.|+|.|+.|..-+.-+...|++|+++|..+++.+++.....
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~ 64 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA 64 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC
Confidence 58999999999999999999999999999999998887766544
No 338
>PRK05884 short chain dehydrogenase; Provisional
Probab=88.41 E-value=0.8 Score=42.97 Aligned_cols=40 Identities=10% Similarity=0.268 Sum_probs=34.7
Q ss_pred cEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 8 RIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 8 ~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++-|.|. |.+|++++..|+++|++|++.+|++++.+++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5777875 899999999999999999999999888776654
No 339
>PRK07074 short chain dehydrogenase; Provisional
Probab=88.30 E-value=0.85 Score=43.29 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=35.6
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|+|. |.+|..++..|+++|++|.+.+|++++.+.+.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADA 45 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45667765 8999999999999999999999999888776653
No 340
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.29 E-value=0.91 Score=42.47 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=36.9
Q ss_pred cCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEE-eCCccchHHHHHh
Q 043238 4 SALSRIGLAG-LAVMGQKLALNVPEKGFQISVY-NRTTSKVDETLDR 48 (426)
Q Consensus 4 ~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vy-nr~~~~~~~l~~~ 48 (426)
.++++|-|+| .|.+|..+++.|+++|++|.+. +|++++.+.+.+.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~ 49 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEE 49 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 3445788887 4899999999999999999998 9998877666543
No 341
>PRK15076 alpha-galactosidase; Provisional
Probab=88.26 E-value=0.46 Score=49.82 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=30.4
Q ss_pred CcEEEEchhHHHHHHHH--HHH----hCCCeEEEEeCCccchHH
Q 043238 7 SRIGLAGLAVMGQKLAL--NVP----EKGFQISVYNRTTSKVDE 44 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~--nL~----~~G~~V~vynr~~~~~~~ 44 (426)
+||+|||.|.||...+. .++ -.|.+|.++|+++++.+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~ 45 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEE 45 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHH
Confidence 68999999999977666 554 235689999999988663
No 342
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=88.19 E-value=1 Score=42.83 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=30.9
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~ 39 (426)
+.++|.|.|+|+.|+.+|..|.+.|. .|.|-|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 34689999999999999999999987 577788877
No 343
>PRK07060 short chain dehydrogenase; Provisional
Probab=88.12 E-value=0.98 Score=42.33 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=36.4
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++-|.|. |..|..++..|+++|++|.+.+|++++.+++.+.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~ 52 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE 52 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46888887 8999999999999999999999999887766543
No 344
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=88.07 E-value=0.66 Score=44.63 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=31.6
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
+|-|||.|..|..+|..|+++|.+|.++++.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 6899999999999999999999999999988653
No 345
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=88.06 E-value=0.6 Score=48.88 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=31.5
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
+|.|||.|..|...|..|+++|++|.++++.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 7999999999999999999999999999977653
No 346
>PRK08339 short chain dehydrogenase; Provisional
Probab=88.03 E-value=0.98 Score=43.48 Aligned_cols=42 Identities=10% Similarity=0.268 Sum_probs=34.7
Q ss_pred CcEEEE--chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLA--GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~I--GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.|+.+| |.|-+|.++|+.|+++|++|.+.+|++++.+++.+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 51 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREK 51 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 456565 457899999999999999999999999887766543
No 347
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=88.01 E-value=0.66 Score=47.47 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=33.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
|++|||||-|..|..|+....+.|++|.++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 468999999999999999999999999999988754
No 348
>PRK07102 short chain dehydrogenase; Provisional
Probab=88.00 E-value=0.88 Score=42.85 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=35.4
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++|-|.| .|..|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 43 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLAD 43 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence 4677776 6999999999999999999999999988766554
No 349
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=87.95 E-value=1 Score=44.75 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=38.3
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
|.....++|-|.| .|-+|..+++.|+++|++|.+.+|+.++.+++.+.
T Consensus 1 m~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~ 49 (322)
T PRK07453 1 MSQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQE 49 (322)
T ss_pred CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 5444455566665 68999999999999999999999999887776543
No 350
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.87 E-value=0.78 Score=43.77 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=30.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC---eEEEEeCC
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF---QISVYNRT 38 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~---~V~vynr~ 38 (426)
++|-|+|.|.+|..+|..|.+.|. +|++.||+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 579999999999999999999997 49999999
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.87 E-value=0.91 Score=47.94 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=30.7
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++|.|||.|..|..+|..|+++|++|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999765
No 352
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=87.70 E-value=5.9 Score=32.64 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccchhhHHHHHhHHhhhccCCCCCCcchhhHHHh
Q 043238 153 SGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEIFDEWNKGELESFLVQITADIFKVKDEYGEGELVDKILDK 232 (426)
Q Consensus 153 ag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~if~~W~~G~i~S~L~ei~~~il~~~~~~~~~~lld~i~kd 232 (426)
.+.++|.+.|++.+..+...-|...+.++.+ +|..++.+.+ +...-++ . ..+.-...+.+. -+ -||
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~---~~d~ri~-----~-~~~~pg~g~GG~-Cl---pkD 68 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAA---NTDPRIG-----P-HYLRPGPGFGGS-CL---PKD 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHH---HTSTTTT-----S-SS-S-SSS--SS-CH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---ccCcccc-----c-ccCCCCCCCCCc-ch---hhh
Confidence 4678999999999999999999999999987 9999998884 3211111 0 111111112222 22 244
Q ss_pred hcccchHHHHHHHHHHcCCChhHHHHHHH
Q 043238 233 TGMKGTRKWTIQQAAELLVAALTIAASLD 261 (426)
Q Consensus 233 ~~qkgtg~w~v~~A~~~gvp~P~isaAl~ 261 (426)
.. ..+..+.+.|.+.+.+.+++.
T Consensus 69 ~~------~L~~~~~~~g~~~~ll~~~~~ 91 (96)
T PF00984_consen 69 PY------ALIYLAKELGYPPQLLEAVIN 91 (96)
T ss_dssp HH------HHHHHHHHTTSHHHHHHHHHH
T ss_pred HH------HHHHHHHHcCCCHHHHHHHHH
Confidence 43 567889999999997777654
No 353
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.70 E-value=1.1 Score=42.31 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=34.6
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|.| .|.+|..+|..|+++|++|.+.+|++++.+++.+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVAL 50 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 4566665 58999999999999999999999999887666543
No 354
>PRK06184 hypothetical protein; Provisional
Probab=87.68 E-value=0.7 Score=49.08 Aligned_cols=34 Identities=15% Similarity=0.393 Sum_probs=31.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.+|-|||.|.-|..+|..|+++|++|+++++.++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5799999999999999999999999999999764
No 355
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.61 E-value=1.1 Score=41.90 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
.+.+-|.| .|..|..++..|+++|++|.+.+|++++.+++.+
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~ 49 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAE 49 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34566665 6799999999999999999999999887666543
No 356
>PRK14982 acyl-ACP reductase; Provisional
Probab=87.55 E-value=0.91 Score=46.10 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=36.8
Q ss_pred CCcEEEEch-hHHHHHHHHHHHhC-C-CeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAGL-AVMGQKLALNVPEK-G-FQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IGl-G~MG~~lA~nL~~~-G-~~V~vynr~~~~~~~l~~~ 48 (426)
.++|.|+|. |.||+.+++.|+.+ | .+|.+.||+.++.+.+.+.
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~e 200 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAE 200 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHH
Confidence 367999998 89999999999864 5 5999999999988887654
No 357
>PRK11445 putative oxidoreductase; Provisional
Probab=87.53 E-value=0.64 Score=46.94 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.8
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.+|.|||.|.-|..+|..|+++ ++|++++|.++
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 5899999999999999999999 99999998864
No 358
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=87.53 E-value=0.8 Score=44.97 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=35.0
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
..|.|||.|.-|-+-|..|...|++|+||++..-.--++.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence 4699999999999999999999999999999876544443
No 359
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.50 E-value=0.66 Score=46.39 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=29.8
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCC--eEEEEeCCc
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGF--QISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~--~V~vynr~~ 39 (426)
|||+|||. |..|..++..|+..|+ +|.++||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 58999997 9999999999999997 499999954
No 360
>PRK06180 short chain dehydrogenase; Provisional
Probab=87.48 E-value=1 Score=43.52 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=35.3
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|.| .|-+|..+++.|+++|++|.+.+|++++.+.+.+.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~ 47 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL 47 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh
Confidence 4566666 58999999999999999999999999887766543
No 361
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.46 E-value=0.89 Score=48.10 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=31.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.++|+|+|+|.-|.+.|+-|.++|.+|+++|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4589999999999999999999999999999543
No 362
>PRK10015 oxidoreductase; Provisional
Probab=87.45 E-value=0.81 Score=47.78 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=34.3
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|++.. .+|-|||.|.-|...|..|+++|++|.+.+|.+.
T Consensus 1 m~~~~-~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 1 MSDDK-FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred CCccc-cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 55443 5899999999999999999999999999998765
No 363
>PLN00016 RNA-binding protein; Provisional
Probab=87.45 E-value=0.58 Score=47.75 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=34.9
Q ss_pred ccCCCcEEEE----c-hhHHHHHHHHHHHhCCCeEEEEeCCccch
Q 043238 3 ASALSRIGLA----G-LAVMGQKLALNVPEKGFQISVYNRTTSKV 42 (426)
Q Consensus 3 ~~~~~~IG~I----G-lG~MG~~lA~nL~~~G~~V~vynr~~~~~ 42 (426)
..++++|-|+ | .|.+|+.++..|+++||+|++.+|+++..
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~ 93 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPS 93 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcch
Confidence 3456789999 5 69999999999999999999999988654
No 364
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.44 E-value=0.81 Score=48.87 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhC--CCeEEEEeCC
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEK--GFQISVYNRT 38 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~--G~~V~vynr~ 38 (426)
|..+...+|.|||-|.||.++|..|++. |.+|+++.|-
T Consensus 1 ~~~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 1 MAKSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred CCCCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 5566667899999999999999999988 8999999983
No 365
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.31 E-value=0.81 Score=47.70 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=31.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|.|||+|..|.+.++-|+++|++|+++|..+.
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 45799999999999999999999999999997654
No 366
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.31 E-value=0.6 Score=44.99 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccch
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKV 42 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~ 42 (426)
..+|.|||+|-.|+.+|.+|++.|. ++++.|.+.-..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 4689999999999999999999996 788888776443
No 367
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=87.30 E-value=0.73 Score=48.99 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=30.3
Q ss_pred cEEEEchhHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 043238 8 RIGLAGLAVMGQKLALNVPEK--GFQISVYNRTTS 40 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~--G~~V~vynr~~~ 40 (426)
+|.|||-|.||.++|..|++. |.+|+|+++..+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 789999999999999999987 999999998653
No 368
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.28 E-value=0.79 Score=50.57 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..++|.|||.|..|...|..|++.|++|++|++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 346899999999999999999999999999998764
No 369
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=87.24 E-value=0.61 Score=47.02 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=30.5
Q ss_pred ccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 3 ASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 3 ~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
+.+.-++.|||.|+||..-|.+|+++|.++.+-++-
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf 39 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF 39 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence 344557999999999999999999999888877654
No 370
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.21 E-value=0.92 Score=40.76 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=34.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
.++|-|||.|.+|...+..|.+.|++|+|.+ ++..+++.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~ 52 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKE 52 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHh
Confidence 4689999999999999999999999999995 555566654
No 371
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=87.20 E-value=0.68 Score=48.27 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=29.7
Q ss_pred cEEEEchhHHHHHHHHHHHh----CCCeEEEEeCCc
Q 043238 8 RIGLAGLAVMGQKLALNVPE----KGFQISVYNRTT 39 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~----~G~~V~vynr~~ 39 (426)
+|.|||.|..|..+|..|++ +|++|.++++.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 69999999999999999998 899999999843
No 372
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.14 E-value=1.1 Score=42.91 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=31.9
Q ss_pred CCccCCCcEEEE-chh---HHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 1 MEASALSRIGLA-GLA---VMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 1 m~~~~~~~IG~I-GlG---~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
|+..+..|+.+| |.+ -+|.++|+.|++.|++|.+..|+.
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 677776565555 764 799999999999999999998883
No 373
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=87.11 E-value=1.2 Score=42.31 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=35.2
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
.+++=|.| .|.+|..+|+.|+++|++|.+.+|+.++.+++.+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 34566665 5999999999999999999999999988777654
No 374
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=87.07 E-value=1 Score=40.25 Aligned_cols=41 Identities=12% Similarity=0.314 Sum_probs=29.0
Q ss_pred CcEEEEchhHHHHHHHHHHHh-CCCeEEE-EeC-CccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPE-KGFQISV-YNR-TTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~-~G~~V~v-ynr-~~~~~~~l~~ 47 (426)
++|||+|+|.||+.+++.+.+ .+++|.+ .|+ +++....+.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~ 44 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLK 44 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhc
Confidence 379999999999999999885 4666554 553 4444444443
No 375
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.03 E-value=1.1 Score=42.74 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=36.1
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++-|+| .|.+|..++..|+++|++|.+.+|++++.+++.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 44 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAE 44 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 4577775 68999999999999999999999999988877654
No 376
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.81 E-value=0.9 Score=43.86 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccchHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKVDE 44 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~ 44 (426)
.++|.|||+|..|+.++.+|+..|. ++++.|.+.-....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN 71 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSN 71 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcch
Confidence 4689999999999999999999996 78998877644333
No 377
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.81 E-value=0.84 Score=47.76 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=30.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
-.|.|||+|..|.++|+-|.+.|++|+++|+.+.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3599999999999999999999999999998654
No 378
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=86.80 E-value=1.3 Score=42.42 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=33.7
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+++=|.| .|-+|..+|+.|+++|++|.+.+|+.++.+++.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 3455555 5789999999999999999999999888777654
No 379
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=86.70 E-value=0.85 Score=48.71 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=30.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhC-C-CeEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEK-G-FQISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~-G-~~V~vynr~~ 39 (426)
+..+|.|||.|.||.++|..|++. + .+|++.++..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 446899999999999999999986 4 6999999864
No 380
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.67 E-value=1 Score=48.12 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHR 51 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~ 51 (426)
-.+|.|||.|.+|..-+..+...|.+|.++|+++++.+...+.|+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 3589999999999999999999999999999999999888777764
No 381
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=86.67 E-value=0.94 Score=48.34 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhC--CCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEK--GFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~--G~~V~vynr~~~ 40 (426)
..+|.|||.|.||.++|..|++. |.+|+|.+|...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 35899999999999999999974 789999998754
No 382
>PRK07062 short chain dehydrogenase; Provisional
Probab=86.65 E-value=1.4 Score=42.09 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=33.2
Q ss_pred cEEEE--chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 8 RIGLA--GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 8 ~IG~I--GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++.+| |.|-+|..+|+.|+++|++|.+.+|++++.+++.+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 51 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEAR 51 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 44444 457899999999999999999999999887766543
No 383
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.55 E-value=1.4 Score=41.40 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=35.6
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+++-|+|. |.+|..+++.|+++|++|.+.+|++++.++..+
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~ 47 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVA 47 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888887 999999999999999999999999887766544
No 384
>PRK08177 short chain dehydrogenase; Provisional
Probab=86.52 E-value=1.3 Score=41.33 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=33.9
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
+++-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 3466665 899999999999999999999999998876554
No 385
>PRK06101 short chain dehydrogenase; Provisional
Probab=86.44 E-value=1.2 Score=41.96 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=34.4
Q ss_pred cEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 8 RIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 8 ~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++-|.| .|-+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 455555 79999999999999999999999998887776543
No 386
>PRK12746 short chain dehydrogenase; Provisional
Probab=86.43 E-value=1.2 Score=42.05 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=36.6
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEE-eCCccchHHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVY-NRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vy-nr~~~~~~~l~~ 47 (426)
|++.+.++|-|.| .|-+|+.+|+.|+++|++|.+. .|+.++.+++.+
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~ 49 (254)
T PRK12746 1 MKNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIR 49 (254)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 6665556777776 7899999999999999999774 788776655543
No 387
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.39 E-value=0.75 Score=45.14 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCC-CeEEEEeCCccc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKG-FQISVYNRTTSK 41 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G-~~V~vynr~~~~ 41 (426)
..++|.|||+|-.|+.+|.+|++.| -+++++|.+.-.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 4568999999999999999999999 589999876543
No 388
>PRK07478 short chain dehydrogenase; Provisional
Probab=86.37 E-value=1.4 Score=41.75 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=34.9
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~ 49 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAE 49 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4566665 57899999999999999999999999887776543
No 389
>PRK12828 short chain dehydrogenase; Provisional
Probab=86.32 E-value=1.5 Score=40.74 Aligned_cols=40 Identities=18% Similarity=0.411 Sum_probs=33.5
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
++|-|.| .|..|..+++.|+++|++|.+.+|++++..+..
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL 48 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHH
Confidence 4566675 599999999999999999999999987765544
No 390
>PRK05876 short chain dehydrogenase; Provisional
Probab=86.28 E-value=1.4 Score=42.80 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCccCCCcEEEE--chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLA--GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~I--GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|...+ .+..+| |.|-+|.++|..|+++|++|.+.+|++++.+++.+
T Consensus 1 ~~~~~-~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~ 48 (275)
T PRK05876 1 MDGFP-GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVN 48 (275)
T ss_pred CCCcC-CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 55533 344444 58899999999999999999999999887776654
No 391
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=86.25 E-value=0.96 Score=46.60 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=30.6
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.+|.|||.|..|..+|..|++.|.+|.+.+++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 489999999999999999999999999999754
No 392
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=86.25 E-value=1.2 Score=42.10 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=35.2
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|+|-|+| .|..|..+|..|+++|++|.+.+|++++.+.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3577787 5899999999999999999999999988776654
No 393
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=86.15 E-value=0.93 Score=47.63 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=31.3
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhC--CCeEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEK--GFQISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~--G~~V~vynr~~ 39 (426)
...+|.|||.|.+|.+.|..|+++ |.+|+|.++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 346899999999999999999998 89999999763
No 394
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=86.13 E-value=0.9 Score=46.88 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
++|-|||.|.-|...|..|+++|++|.+.++.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3799999999999999999999999999998754
No 395
>PLN02463 lycopene beta cyclase
Probab=86.01 E-value=1 Score=47.50 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=32.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..+|.|||.|.-|..+|..|+++|++|.+.++++.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 35899999999999999999999999999998764
No 396
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=85.95 E-value=1.1 Score=47.88 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
...+|-|||-|..|.++|+.|++.|.+|.+.++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3458999999999999999999999999999985
No 397
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.89 E-value=1.5 Score=41.14 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=35.7
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++|-|+| .|.+|..++..|+++|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA 47 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688887 5899999999999999999999999988776654
No 398
>PRK08309 short chain dehydrogenase; Provisional
Probab=85.88 E-value=1.4 Score=40.30 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=34.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|++-|+|..-||..++..|+++|++|.+..|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 35778887678888999999999999999999888777654
No 399
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.88 E-value=1.3 Score=46.75 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccch
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKV 42 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~ 42 (426)
|.....++|.|+|+|.-|.+.++-|. +|.+|+++|..++..
T Consensus 1 ~~~~~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~ 41 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANR 41 (454)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCch
Confidence 33444568999999999999999998 599999999665543
No 400
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=85.85 E-value=1.6 Score=41.66 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=34.6
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++-|.| .|-+|.++|..|+++|++|.+.+|++++.+++.+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQR 49 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4455555 57899999999999999999999999888776654
No 401
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=85.82 E-value=0.93 Score=46.38 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=29.9
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
+|.|||.|..|...|..|++.|++|.+.++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 6899999999999999999999999999987
No 402
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=85.79 E-value=4.2 Score=39.53 Aligned_cols=165 Identities=17% Similarity=0.220 Sum_probs=83.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCC----eEEEEeCCccchHH-HHHhccccCCCCcccccCCCC--CCcE--ecCCchHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGF----QISVYNRTTSKVDE-TLDRAHREDRPLHSQGLRPLH--PTPQ--IHHHRPLG 77 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~----~V~vynr~~~~~~~-l~~~~~~~~~~~~~~~~~~~~--~~vI--v~~g~~vd 77 (426)
++|||||.|.|..+|+.++.+.|. ++..+-.+...... +.+.+.+.. ..+ .+.++ +.++ +++ ..+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~-~~n---~~~~~~s~v~~~svKp-~~i~ 75 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTV-FTN---LEVLQASDVVFLSVKP-QVIE 75 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceee-ech---HHHHhhccceeEeecc-hhHH
Confidence 479999999999999999999995 55555553222222 333332210 000 11111 3333 444 2355
Q ss_pred HHHhhcCCC--------cc------------ccchhhh-hhcc-ccCCCCChhhhhcCCeEeecCC---HHHHHHHHHHH
Q 043238 78 ETSGTSTPS--------AV------------SMKPVRR-VCFI-SAWGSPGARKARHGPSLMPGGS---FEAYNNIRDIL 132 (426)
Q Consensus 78 ~vl~~l~p~--------s~------------~~~t~rr-~~~v-~~pVsGg~~gA~~G~slm~GG~---~~a~~~v~~iL 132 (426)
.|+.++.+. ++ .+ ..-| ++.+ ..|. ..+.|.+.+.-|. .++.+.++.+|
T Consensus 76 ~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~-~~~rviRvmpNtp~-----~v~eg~sv~~~g~~~~~~D~~l~~~ll 149 (267)
T KOG3124|consen 76 SVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLS-PPTRVIRVMPNTPS-----VVGEGASVYAIGCHATNEDLELVEELL 149 (267)
T ss_pred HHhhcCccccccceEEEEEeecccHHHHHHhcC-CCCceEEecCCChh-----hhhcCcEEEeeCCCcchhhHHHHHHHH
Confidence 566555441 00 00 0111 2211 2332 2334555454443 45567888899
Q ss_pred HHhhcccC-CCCcEE-EeCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 043238 133 QRVAAHVD-DGPCIT-YIGEGGSGNFVKMVHNGIEYGDMQLISQAYDVLKHVGGVSNAELAEI 193 (426)
Q Consensus 133 ~~iaa~~~-~~~~v~-~vG~~Gag~~vKmv~N~i~~~~m~~iAEa~~Ll~~~g~ld~~~ia~i 193 (426)
+.++.-.+ -|.|+. +.|=.|+| -++.+..+.+++++=- +.| |..+.-.++
T Consensus 150 ~~vG~~~evpE~~iDavTgLsGSg-------PAy~f~~ieaLadGgV---kmG-lPr~lA~~l 201 (267)
T KOG3124|consen 150 SAVGLCEEVPEKCIDAVTGLSGSG-------PAYVFVAIEALADGGV---KMG-LPRQLAYRL 201 (267)
T ss_pred HhcCcceeCcHHhhhHHhhccCCc-------HHHHHHHHHHHhcccc---ccC-CCHHHHHHH
Confidence 99884321 223443 23446777 4555556666666522 233 787776665
No 403
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.62 E-value=1.6 Score=41.09 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=33.0
Q ss_pred CCccCCCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|+..+.++|-|.|. |-+|..++..|+++|++|.+..|+.+
T Consensus 1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~ 41 (248)
T PRK07806 1 MGDLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKA 41 (248)
T ss_pred CCCCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCch
Confidence 55544466777885 89999999999999999999988764
No 404
>PRK08589 short chain dehydrogenase; Validated
Probab=85.52 E-value=1.7 Score=41.92 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=35.1
Q ss_pred CCccCCCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 1 MEASALSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 1 m~~~~~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
|+....+++=|.|. |-+|.++|+.|+++|++|.+.+|+ ++.+++.+
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~ 47 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVD 47 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHH
Confidence 66544445555554 889999999999999999999999 66555543
No 405
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.41 E-value=1.1 Score=43.31 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=30.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCC-----------CeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKG-----------FQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G-----------~~V~vynr~~~ 40 (426)
...+|.|||+|-.|+.++.+|++.| .+++++|.+.=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4568999999999999999999864 28899987653
No 406
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=85.41 E-value=1.1 Score=45.82 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=31.1
Q ss_pred CcEEEEchhHHHHHHHHHHHhCC--CeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKG--FQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G--~~V~vynr~~~ 40 (426)
.+|.|||.|.-|..+|..|+++| ++|.++++.++
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 57999999999999999999986 99999999764
No 407
>PRK07208 hypothetical protein; Provisional
Probab=85.31 E-value=1.2 Score=46.87 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=32.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
++++|.|||.|.-|-+.|..|.++|++|+|+.++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 445799999999999999999999999999988764
No 408
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.31 E-value=1 Score=47.89 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=32.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
++++|.|||.|.=|-.-|..|+++|++|.|+.|+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 45789999999999999999999999999998765
No 409
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.29 E-value=1.3 Score=43.81 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=32.8
Q ss_pred CCcEEEEchhH-HHHHHHHHHHhCCCeEEEEeCCccchH
Q 043238 6 LSRIGLAGLAV-MGQKLALNVPEKGFQISVYNRTTSKVD 43 (426)
Q Consensus 6 ~~~IG~IGlG~-MG~~lA~nL~~~G~~V~vynr~~~~~~ 43 (426)
-++|.|||-|. +|.++|..|.++|.+|+++++.....+
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~ 196 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA 196 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence 36899999988 999999999999999999998654433
No 410
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.28 E-value=1.9 Score=43.58 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHH---hCCCe-EEEEeCCccchHHHHHhcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVP---EKGFQ-ISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~---~~G~~-V~vynr~~~~~~~l~~~~~ 50 (426)
|.+++.-++||+|+|.|++-.+++|- +.+|. |.|++|+.+++.+|.+...
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~ 54 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN 54 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC
Confidence 77888889999999999999999985 44666 5889999999999987653
No 411
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.27 E-value=1.8 Score=40.30 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=32.6
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|...++++|-|+| .|.+|..|+..|+++|++|.+-.|+.+
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~ 41 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE 41 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 6666777888886 699999999999999999877555444
No 412
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=85.25 E-value=1.7 Score=42.52 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=40.0
Q ss_pred CCccCCCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhc
Q 043238 1 MEASALSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 1 m~~~~~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~ 49 (426)
|...+++.+-|-|. +-+|..+|+.|+++|++|.+-.|+.++.+++.++-
T Consensus 1 ~~~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l 50 (265)
T COG0300 1 PGPMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKEL 50 (265)
T ss_pred CCCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHH
Confidence 44555555666664 67999999999999999999999999999988653
No 413
>PRK05875 short chain dehydrogenase; Provisional
Probab=85.18 E-value=1.8 Score=41.53 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=34.8
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++|=|.|. |..|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAE 49 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 56777775 899999999999999999999999887766554
No 414
>PRK06057 short chain dehydrogenase; Provisional
Probab=85.16 E-value=1.8 Score=41.10 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=34.8
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++|=|+|. |.+|..+++.|+++|++|.+.+|++.+.+.+.+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46777776 999999999999999999999999877665544
No 415
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.04 E-value=1.1 Score=49.34 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=32.1
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|.|||.|..|...|..|++.|++|++|++.+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46899999999999999999999999999998753
No 416
>PTZ00325 malate dehydrogenase; Provisional
Probab=85.02 E-value=1.2 Score=44.96 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=30.2
Q ss_pred cCCCcEEEEch-hHHHHHHHHHHHhCC--CeEEEEeCC
Q 043238 4 SALSRIGLAGL-AVMGQKLALNVPEKG--FQISVYNRT 38 (426)
Q Consensus 4 ~~~~~IG~IGl-G~MG~~lA~nL~~~G--~~V~vynr~ 38 (426)
-.|.||+|||. |.+|+.+|..|+.++ .++..+|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 34569999999 999999999999665 589999993
No 417
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.01 E-value=1.6 Score=43.85 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=35.0
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+.|-|.|. |-+|..+|..|+++|++|.+.+|++++.+++.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~ 50 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEE 50 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 34555565 8999999999999999999999999888776543
No 418
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.01 E-value=1.8 Score=43.43 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.8
Q ss_pred cEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 8 RIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 8 ~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
.|-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~ 50 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAA 50 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 455555 5899999999999999999999999988776654
No 419
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.99 E-value=1.1 Score=46.12 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~ 39 (426)
..++|.|||+|-.|+.++.+|+..|. ++++.|++.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34689999999999999999999997 799999883
No 420
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=84.96 E-value=1.1 Score=44.91 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=29.7
Q ss_pred cEEEEch-hHHHHHHHHHHHhCCC--eEEEEeCCc
Q 043238 8 RIGLAGL-AVMGQKLALNVPEKGF--QISVYNRTT 39 (426)
Q Consensus 8 ~IG~IGl-G~MG~~lA~nL~~~G~--~V~vynr~~ 39 (426)
||+|||. |..|+++|..|+.+|+ ++..+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6999999 9999999999998886 799999987
No 421
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=84.92 E-value=0.84 Score=45.24 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.8
Q ss_pred ccCCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCcc
Q 043238 3 ASALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTS 40 (426)
Q Consensus 3 ~~~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~ 40 (426)
....++|-|+|+|-.|..+|.||+..|. +|+++|.+.-
T Consensus 16 kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~v 54 (286)
T cd01491 16 KLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPC 54 (286)
T ss_pred HHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCcc
Confidence 3455789999999999999999999997 6999987653
No 422
>PRK12831 putative oxidoreductase; Provisional
Probab=84.92 E-value=1.3 Score=46.72 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=32.4
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
...++|.|||.|..|...|..|+++|++|+++++..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 345789999999999999999999999999998754
No 423
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.91 E-value=1.8 Score=40.97 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=35.9
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|.| .|.+|..++..|+++|++|.+.+|++++.+.+.+.
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~ 52 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAE 52 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 5677776 59999999999999999999999999887776543
No 424
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=84.85 E-value=1.3 Score=46.78 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|.|||.|..|...|..|+++|++|++|++.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 35899999999999999999999999999998753
No 425
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.82 E-value=1.8 Score=40.80 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=36.1
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~ 47 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEA 47 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 4677787 69999999999999999999999999887766543
No 426
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=84.82 E-value=1.3 Score=51.37 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=37.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCC-Ce-------------EEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKG-FQ-------------ISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G-~~-------------V~vynr~~~~~~~l~~~~ 49 (426)
+++|+|||.|.||+..|..|+++. ++ |+|.|++.++.+++.+..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~ 626 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI 626 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc
Confidence 568999999999999999998763 33 999999999988887643
No 427
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=84.82 E-value=1.2 Score=45.95 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+.+|.|||.|..|.+-|..|.++|++|.||..+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 56899999999999999999999999999988554
No 428
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.81 E-value=1.9 Score=40.28 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=35.0
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777765 789999999999999999999999988776643
No 429
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.79 E-value=1.8 Score=41.59 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=33.8
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+++.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 50 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAV 50 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45667765 89999999999999999999999988766554
No 430
>PRK07190 hypothetical protein; Provisional
Probab=84.74 E-value=1.2 Score=47.29 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=34.6
Q ss_pred CCccCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 1 MEASALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 1 m~~~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|+.+. .+|-|||.|..|..+|..|+++|.+|.+.++.++
T Consensus 1 m~~~~-~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 1 MSTQV-TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred CCCcc-ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 55454 5899999999999999999999999999999875
No 431
>PRK12829 short chain dehydrogenase; Provisional
Probab=84.71 E-value=1.5 Score=41.46 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=35.9
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.+++-|+| .|.+|..++..|+++|++|.+.+|+++..+++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~ 54 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAAR 54 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 35677775 59999999999999999999999998877766544
No 432
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.64 E-value=1.8 Score=40.95 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=34.1
Q ss_pred cEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 8 RIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 8 ~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.+=|.|. |.+|..+|+.|+++|++|.+.+|+.++.+++.+.
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADE 52 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 4555564 8999999999999999999999999887776543
No 433
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=84.64 E-value=1.4 Score=44.75 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=30.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHhC-CCeE-EEEeCCccchHHHHH
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEK-GFQI-SVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~-G~~V-~vynr~~~~~~~l~~ 47 (426)
|.+|||+|+|.||+.+++.+.++ +++| .+.+++++....+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~ 44 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAV 44 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHH
Confidence 35899999999999999998864 5665 455666555554444
No 434
>PRK06834 hypothetical protein; Provisional
Probab=84.64 E-value=1.2 Score=47.29 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=31.9
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.+|.|||.|..|..+|..|+++|++|.|+++.++
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5799999999999999999999999999998764
No 435
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.53 E-value=1.1 Score=43.14 Aligned_cols=75 Identities=21% Similarity=0.460 Sum_probs=51.2
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHHHh-hHhHHHHHHHHHHcCCchhhhHhhhhhHhhhcc-CCCchHHHHHhhhhcccc
Q 043238 309 IKNAYQRNPNLASLVVDPEFAREMVQR-QAAWRRVVGLAISAGISTPGMCASLSYFDTYRR-ARLPANLVQAQRDLFGAH 386 (426)
Q Consensus 309 i~~~y~~~~~~~nll~~~~f~~~~~~~-~~~wr~vv~~~~~~~~~~p~~saal~y~~~~~~-~~l~~nliqaqrD~fgah 386 (426)
-+.+|++.+++. .|...+... ..-| .|..|++.|+|+|.++.||.-=-..|+ ......++-|.|.=||.|
T Consensus 223 t~~Af~~d~~L~------q~~g~v~dSGEGrW--Tv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH 294 (300)
T COG1023 223 TAEAFKKDPDLD------QISGRVSDSGEGRW--TVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGH 294 (300)
T ss_pred HHHHHhhCCCHH------HhcCeeccCCCcee--ehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCc
Confidence 467888877753 233333332 3446 688999999999999988754322222 233467899999999999
Q ss_pred ccccc
Q 043238 387 AYERI 391 (426)
Q Consensus 387 ~~~r~ 391 (426)
--++.
T Consensus 295 ~vk~k 299 (300)
T COG1023 295 AVKKK 299 (300)
T ss_pred ccccC
Confidence 86653
No 436
>PRK06953 short chain dehydrogenase; Provisional
Probab=84.52 E-value=1.5 Score=40.75 Aligned_cols=41 Identities=10% Similarity=0.231 Sum_probs=34.4
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+++-|+| .|.+|+.+++.|+++|++|.+.+|++++.+++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~ 43 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA 43 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence 3555665 7999999999999999999999999887776653
No 437
>PRK08223 hypothetical protein; Validated
Probab=84.47 E-value=0.91 Score=44.98 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=32.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccch
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKV 42 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~ 42 (426)
..++|.|||+|-.|+.+|.+|+..|. ++.+.|.+.=..
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~ 64 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL 64 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch
Confidence 34689999999999999999999996 788888765433
No 438
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=84.30 E-value=1.5 Score=45.99 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=33.3
Q ss_pred cEEEEchhHHHHH-HHHHHHhCCCeEEEEeCCccc-hHHHHHhc
Q 043238 8 RIGLAGLAVMGQK-LALNVPEKGFQISVYNRTTSK-VDETLDRA 49 (426)
Q Consensus 8 ~IG~IGlG~MG~~-lA~nL~~~G~~V~vynr~~~~-~~~l~~~~ 49 (426)
+|-|||+|..|.+ +|+-|.++|++|+++|+.... .+.|.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g 44 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG 44 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc
Confidence 4789999999998 999999999999999976543 33444333
No 439
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=84.25 E-value=1.3 Score=50.90 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
..++|.|||.|.-|-..|..|++.||+|++|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 3468999999999999999999999999999975
No 440
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.21 E-value=1.7 Score=41.09 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=34.8
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|.| .|.+|..+|+.|+++|++|.+.+|++++.+++.+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAE 48 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 4566665 68999999999999999999999999877766544
No 441
>PRK08264 short chain dehydrogenase; Validated
Probab=84.14 E-value=1.7 Score=40.57 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=33.3
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCC-eEEEEeCCccchHH
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGF-QISVYNRTTSKVDE 44 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~-~V~vynr~~~~~~~ 44 (426)
.++|-|+| .|.+|+.+|..|+++|+ +|.+.+|++++.++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~ 46 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD 46 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence 35678887 69999999999999999 99999999876543
No 442
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.14 E-value=2.3 Score=40.41 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=48.9
Q ss_pred CcEEEEch--hHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhccccCCCCcccccCCCCCCcE-ecCCchHHHHHhhc
Q 043238 7 SRIGLAGL--AVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAHREDRPLHSQGLRPLHPTPQ-IHHHRPLGETSGTS 83 (426)
Q Consensus 7 ~~IG~IGl--G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vI-v~~g~~vd~vl~~l 83 (426)
++|-|.|+ |-+|.++|+-|+++||.|....|+.+..+.|..+.. +. +..+ |...+.|..|..++
T Consensus 8 k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~g-------l~------~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 8 KKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFG-------LK------PYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhC-------Ce------eEEeccCChHHHHHHHHHH
Confidence 46888887 789999999999999999999999999988874321 11 2334 66666676676655
Q ss_pred CC
Q 043238 84 TP 85 (426)
Q Consensus 84 ~p 85 (426)
..
T Consensus 75 r~ 76 (289)
T KOG1209|consen 75 RA 76 (289)
T ss_pred hh
Confidence 43
No 443
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=84.06 E-value=1.8 Score=46.93 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=34.5
Q ss_pred cEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 8 RIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 8 ~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
.|-|.| .|.+|..+++.|+++|++|.+..|+.++.+.+.+
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 466666 5999999999999999999999999998877654
No 444
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=84.04 E-value=1.6 Score=44.07 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.3
Q ss_pred CcEEEEchhHHHHHHHHHHHhC--C-----CeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEK--G-----FQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~--G-----~~V~vynr~~~ 40 (426)
.+|++||.|++|+++|+.+.++ + .+|..|-+..+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~ 62 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEE 62 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccc
Confidence 5899999999999999998754 2 26888876554
No 445
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.00 E-value=2.1 Score=42.22 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDE 44 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~ 44 (426)
|.++. ++|-|.| .|-+|+.++..|+++|++|.+..|++++.+.
T Consensus 1 ~~~~~-k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~ 44 (325)
T PLN02989 1 MADGG-KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKK 44 (325)
T ss_pred CCCCC-CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhh
Confidence 66664 4788887 6999999999999999999999888876544
No 446
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=83.96 E-value=1.5 Score=44.00 Aligned_cols=39 Identities=13% Similarity=0.372 Sum_probs=32.9
Q ss_pred CcEEEEch-hHHHHHHHHHHHhC-CCeEEEEeCCccchHHH
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEK-GFQISVYNRTTSKVDET 45 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~-G~~V~vynr~~~~~~~l 45 (426)
|+|-|.|. |..|+.|+..|+++ |++|.+.+|+.++...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 57999996 99999999999986 79999999987654443
No 447
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=83.92 E-value=1.6 Score=44.81 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=35.5
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
.+|=|||.|+.|+++|..|++.|.+|.|-.|+-+.-++++
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRiv 85 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIV 85 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHH
Confidence 4788999999999999999999999999999887655544
No 448
>PRK09291 short chain dehydrogenase; Provisional
Probab=83.91 E-value=1.9 Score=40.68 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++|-|.| .|.+|..+++.|+++|++|.+..|++++.+++.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~ 45 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAE 45 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 44677776 58999999999999999999999998877666543
No 449
>PRK06182 short chain dehydrogenase; Validated
Probab=83.91 E-value=1.9 Score=41.45 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=34.4
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
++|-|.| .|-+|..+|..|+++|++|.+.+|++++.+++.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA 44 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4677777 589999999999999999999999988776654
No 450
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.89 E-value=1.2 Score=46.11 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=29.7
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
|+|.|+|+|.-|.++|+-|. .|+.|+++|..+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~ 33 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFT 33 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCC
Confidence 47999999999999999999 9999999996543
No 451
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.85 E-value=2.2 Score=40.44 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=33.8
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++|-|.| .|.+|+.++..|+++|++|.+.+|++++.+++.+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVA 53 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 4565664 5899999999999999999999999887666554
No 452
>PLN02253 xanthoxin dehydrogenase
Probab=83.79 E-value=2 Score=41.32 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=32.7
Q ss_pred cEEEE--chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 8 RIGLA--GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 8 ~IG~I--GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+..+| |.|.+|.++|+.|+++|++|.+.+|++++.+++.+
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~ 60 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCD 60 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 44444 56899999999999999999999999877666554
No 453
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.76 E-value=2 Score=42.64 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=33.6
Q ss_pred cEEEE--chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 8 RIGLA--GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 8 ~IG~I--GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++.+| |.+-+|..+|+.|+++|++|.+..|+.++.+++.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~ 56 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVA 56 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 44455 57889999999999999999999999988776654
No 454
>PRK06198 short chain dehydrogenase; Provisional
Probab=83.74 E-value=2 Score=40.77 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCe-EEEEeCCccchHHHH
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQ-ISVYNRTTSKVDETL 46 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~-V~vynr~~~~~~~l~ 46 (426)
|.....++|-|+| .|.+|..+++.|+++|++ |.+.+|++++.+...
T Consensus 1 ~~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~ 48 (260)
T PRK06198 1 MGRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQA 48 (260)
T ss_pred CCCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH
Confidence 5455556677776 589999999999999999 999999987665443
No 455
>PRK08251 short chain dehydrogenase; Provisional
Probab=83.73 E-value=2 Score=40.36 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=34.8
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKA 44 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4565664 8999999999999999999999999988776654
No 456
>PRK06482 short chain dehydrogenase; Provisional
Probab=83.62 E-value=2 Score=41.31 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=36.0
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.+++=|.| .|-+|+.++..|+++|++|.+..|++++.+.+.+.
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR 45 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 34566776 68999999999999999999999999887776543
No 457
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.59 E-value=1.6 Score=46.53 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=31.0
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
+.+|-|||.|..|.++|..|+++|.+|.+.++.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 358999999999999999999999999999987
No 458
>PRK06720 hypothetical protein; Provisional
Probab=83.53 E-value=2.7 Score=38.13 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=30.8
Q ss_pred EEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 9 IGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 9 IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
+=|.|. +.+|.+++..|+++|++|.+++|+.+..++..
T Consensus 19 ~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~ 57 (169)
T PRK06720 19 AIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATV 57 (169)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 444565 46999999999999999999999987665543
No 459
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.47 E-value=1.9 Score=41.72 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=32.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+.+-|.|.|-+|..+|+.|+ +|++|.+.+|+.++.+++.+
T Consensus 3 k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~ 42 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAK 42 (275)
T ss_pred CEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHH
Confidence 34445588999999999997 89999999999887766554
No 460
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=83.30 E-value=1.4 Score=48.43 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=32.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.++|.|||.|..|...|..|++.|++|++|++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 46899999999999999999999999999998864
No 461
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.28 E-value=1.1 Score=45.73 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTT 39 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~ 39 (426)
..++|.|||+|-.|+.++.+|+..|. +++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34689999999999999999999997 789998876
No 462
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.19 E-value=1.4 Score=44.35 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=29.8
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCC-------eEEEEeCCc
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGF-------QISVYNRTT 39 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~-------~V~vynr~~ 39 (426)
.||+|||. |.+|+++|..|+..|. ++..+|+.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 43 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ 43 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC
Confidence 58999999 9999999999998886 799999954
No 463
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.16 E-value=1.5 Score=43.99 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=29.5
Q ss_pred CcEEEEch-hHHHHHHHHHHHhCCC--eEEEEeCC
Q 043238 7 SRIGLAGL-AVMGQKLALNVPEKGF--QISVYNRT 38 (426)
Q Consensus 7 ~~IG~IGl-G~MG~~lA~nL~~~G~--~V~vynr~ 38 (426)
+||+|||. |..|+++|..|+..|. ++..+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 48999999 9999999999998884 79999987
No 464
>PRK06924 short chain dehydrogenase; Provisional
Probab=83.16 E-value=2 Score=40.43 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=31.2
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCc-cchHH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTT-SKVDE 44 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~-~~~~~ 44 (426)
++|-|+| .|.+|+.||+.|+++|++|.+.+|++ +..+.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~ 41 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTK 41 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHH
Confidence 4577776 69999999999999999999999987 33333
No 465
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=83.09 E-value=1.5 Score=42.67 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=33.2
Q ss_pred cCCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 4 SALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 4 ~~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
.+..+|-|||.|.-|...|..|++.|++|.+.++.+.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3446899999999999999999999999999998764
No 466
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=83.07 E-value=1.3 Score=43.28 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=26.5
Q ss_pred CcEEEEc-hhHHHHHHHHHHHh-CCCeE-EEEeCC
Q 043238 7 SRIGLAG-LAVMGQKLALNVPE-KGFQI-SVYNRT 38 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~-~G~~V-~vynr~ 38 (426)
++|+|+| +|.||+.+++.+.+ .++++ .++||.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5899999 69999999999986 57764 568854
No 467
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.06 E-value=2.1 Score=40.42 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=34.1
Q ss_pred CcEEEEchh-HHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAGLA-VMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IGlG-~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+.+-|.|.+ .+|.++|+.|+++|++|.+.+|++++.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 48 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQ 48 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 345566654 599999999999999999999999988776543
No 468
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=83.05 E-value=1.1 Score=46.49 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSK 41 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~ 41 (426)
...+|.|||+|-.|+.+|.+|+..|+ +++++|.+.=.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve 78 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVD 78 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 45689999999999999999999997 78999877643
No 469
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=83.04 E-value=2 Score=40.28 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=33.7
Q ss_pred EEEEch-hHHHHHHHHHHHhCCCeEEEEeCCcc--chHHHHHhc
Q 043238 9 IGLAGL-AVMGQKLALNVPEKGFQISVYNRTTS--KVDETLDRA 49 (426)
Q Consensus 9 IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~--~~~~l~~~~ 49 (426)
|.|+|. |..|+.++..|++.|++|.+.-|++. ..+.+.+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g 44 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALG 44 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTT
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhccc
Confidence 678885 99999999999999999999999874 345555444
No 470
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=83.04 E-value=2.1 Score=40.80 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=34.3
Q ss_pred cEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 8 RIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 8 ~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++-|.| -|.+|.++|+.|+++|++|.+.+|++++.++..+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE 43 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 566776 47899999999999999999999998877666543
No 471
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.02 E-value=2.2 Score=40.74 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=34.2
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+++-|.| .|-+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~ 53 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQ 53 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 3455554 56899999999999999999999998887766543
No 472
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=82.98 E-value=1.2 Score=43.58 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.5
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchH
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVD 43 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~ 43 (426)
|+|-|.| .|.+|+.++..|+++|++|.+.+|++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 38 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR 38 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc
Confidence 3688897 599999999999999999999999877643
No 473
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=82.97 E-value=2.3 Score=40.87 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=33.5
Q ss_pred cEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 8 RIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 8 ~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
.+=|.| .|.+|.++++.|+++|++|.+.+|+.++.+++.+.
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 53 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAE 53 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 455555 58999999999999999999999998877666543
No 474
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=82.89 E-value=3.3 Score=42.08 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCcEEEEchhHHHHHHHHHHHhC--CCe-EEEEeCCccchHHHHHhc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEK--GFQ-ISVYNRTTSKVDETLDRA 49 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~--G~~-V~vynr~~~~~~~l~~~~ 49 (426)
..+|||||+ .||...+..+.+. +++ |.++|+++++.+++.+..
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~ 48 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL 48 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh
Confidence 358999999 6899999999875 455 578999999999998764
No 475
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=82.85 E-value=1.3 Score=50.89 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.8
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.++|+|||.|.-|.+-|..|++.||+|+||++.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 4689999999999999999999999999999864
No 476
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=82.84 E-value=2.6 Score=41.43 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=33.0
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchH
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVD 43 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~ 43 (426)
.++|-|.| .|-+|+.++..|+++|++|.+..|+.+...
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~ 42 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPK 42 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchh
Confidence 35788888 799999999999999999999999876543
No 477
>PRK08263 short chain dehydrogenase; Provisional
Probab=82.82 E-value=2.3 Score=40.90 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=34.8
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+.|-|.| .|.+|+.++..|+++|++|.+.+|++++.+.+.+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~ 46 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEK 46 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 3455665 79999999999999999999999999887766543
No 478
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=82.70 E-value=1.3 Score=45.41 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~ 40 (426)
...+|.|||+|-.|+.++.+|+..|. +++++|.+.=
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 34689999999999999999999996 8999998753
No 479
>PRK11579 putative oxidoreductase; Provisional
Probab=82.68 E-value=1.8 Score=43.69 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=28.0
Q ss_pred CcEEEEchhHHHHH-HHHHHHh-CCCeE-EEEeCCccchH
Q 043238 7 SRIGLAGLAVMGQK-LALNVPE-KGFQI-SVYNRTTSKVD 43 (426)
Q Consensus 7 ~~IG~IGlG~MG~~-lA~nL~~-~G~~V-~vynr~~~~~~ 43 (426)
.+|||||+|.||.. .+..+.. .+++| .++|+++++..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~ 44 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK 44 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH
Confidence 58999999999985 5666654 36775 58999987653
No 480
>PLN02686 cinnamoyl-CoA reductase
Probab=82.59 E-value=2.5 Score=43.04 Aligned_cols=44 Identities=9% Similarity=0.248 Sum_probs=35.4
Q ss_pred ccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 3 ASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 3 ~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
..++++|-|.| .|-+|+.++..|+++|++|.+..|+.++.+.+.
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~ 94 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR 94 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34556787776 599999999999999999999888877665553
No 481
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=82.50 E-value=1.8 Score=41.63 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=30.4
Q ss_pred cEEEEchhHHHHHHHHHHHhCCC-eEEEEeCCccch
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGF-QISVYNRTTSKV 42 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~-~V~vynr~~~~~ 42 (426)
+|.|||+|..|+.++.+|+..|+ ++++.|.+.=..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~ 36 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDV 36 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcc
Confidence 58999999999999999999997 788888876443
No 482
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=82.41 E-value=2.4 Score=39.79 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=35.8
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc-chHHHHHh
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS-KVDETLDR 48 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~-~~~~l~~~ 48 (426)
..++|-|||.|.+|..-++.|++.|.+|+|++.+.. .++++.+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~ 52 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQ 52 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHc
Confidence 346899999999999999999999999999987664 33444443
No 483
>PLN02780 ketoreductase/ oxidoreductase
Probab=82.37 E-value=2.1 Score=42.86 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=33.5
Q ss_pred EEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 9 IGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 9 IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+-|.| .|-+|.++|+.|+++|++|.+.+|++++.+++.++
T Consensus 56 ~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~ 96 (320)
T PLN02780 56 ALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDS 96 (320)
T ss_pred EEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Confidence 44445 57899999999999999999999999988776543
No 484
>PRK09072 short chain dehydrogenase; Provisional
Probab=82.37 E-value=2.6 Score=40.15 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=35.8
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|+| .|.+|..+++.|+++|++|++.+|++++.+++.+.
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAAR 48 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 4577777 69999999999999999999999998887776543
No 485
>PRK12827 short chain dehydrogenase; Provisional
Probab=82.32 E-value=2.3 Score=39.71 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCccCCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCC
Q 043238 1 MEASALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRT 38 (426)
Q Consensus 1 m~~~~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~ 38 (426)
|.+.+.++|-|+| .|.+|..+|+.|+++|++|.+.+|+
T Consensus 1 ~~~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~ 39 (249)
T PRK12827 1 MASLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH 39 (249)
T ss_pred CCCcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence 5565667788886 6899999999999999999987654
No 486
>PRK08643 acetoin reductase; Validated
Probab=82.31 E-value=2.5 Score=40.05 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=32.9
Q ss_pred cEEEE-chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 8 RIGLA-GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 8 ~IG~I-GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
++-|+ |.|-+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAAD 44 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34444 67899999999999999999999999887766654
No 487
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.29 E-value=2.7 Score=41.28 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=35.2
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|.| .|-+|.++|..|+++|++|.+.+|+.++.+++.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~ 83 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADR 83 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 3466666 49999999999999999999999999887776543
No 488
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=82.26 E-value=2 Score=48.70 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=34.5
Q ss_pred CcEEEEchhHHHHHH-HHHHHhCCCeEEEEeCCcc-chHHHHHhc
Q 043238 7 SRIGLAGLAVMGQKL-ALNVPEKGFQISVYNRTTS-KVDETLDRA 49 (426)
Q Consensus 7 ~~IG~IGlG~MG~~l-A~nL~~~G~~V~vynr~~~-~~~~l~~~~ 49 (426)
++|.|||+|..|.+. |+-|.++|++|+++|.++. ..++|.+.+
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g 49 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG 49 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC
Confidence 469999999999997 9999999999999997653 344554444
No 489
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=82.23 E-value=2.1 Score=45.77 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=39.2
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHhcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDRAH 50 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~~~ 50 (426)
.++.|+|.|.+|...+..+...|..|.++|+++++.+.+.+.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa 208 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGA 208 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 58999999999999999999999999999999998877766554
No 490
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=82.22 E-value=1.8 Score=45.50 Aligned_cols=36 Identities=14% Similarity=0.399 Sum_probs=32.5
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 5 ALSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 5 ~~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
..++|.|||.|.-|...|..|+++|++|+++++.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 346899999999999999999999999999998753
No 491
>PRK09186 flagellin modification protein A; Provisional
Probab=82.21 E-value=2.7 Score=39.68 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=34.9
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
++|-|.| .|.+|..+|..|+++|++|.+.+|++++.+++.+.
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 47 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLES 47 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHH
Confidence 4566666 58999999999999999999999999887766543
No 492
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=82.18 E-value=2.6 Score=39.95 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=32.7
Q ss_pred cEEEE-chhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 8 RIGLA-GLAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 8 ~IG~I-GlG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+|=|. |.|.+|..+|+.|+++|++|.+.+|+.++.+.+.+
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~ 44 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQ 44 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 45799999999999999999999999887666544
No 493
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=82.11 E-value=1.7 Score=46.00 Aligned_cols=34 Identities=12% Similarity=0.403 Sum_probs=31.4
Q ss_pred CcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 7 SRIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 7 ~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
++|.|||.|.-|...|..|+++|++|+|+.++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5799999999999999999999999999988754
No 494
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=82.11 E-value=1.7 Score=44.23 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=30.6
Q ss_pred cEEEEchhHHHHHHHHHHHhCCCeEEEEeCCcc
Q 043238 8 RIGLAGLAVMGQKLALNVPEKGFQISVYNRTTS 40 (426)
Q Consensus 8 ~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~~ 40 (426)
+|-|||.|.-|..+|..|++.|++|.+.++.++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 588999999999999999999999999998764
No 495
>PLN02650 dihydroflavonol-4-reductase
Probab=82.10 E-value=2.6 Score=42.22 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=35.1
Q ss_pred CCCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHH
Q 043238 5 ALSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETL 46 (426)
Q Consensus 5 ~~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~ 46 (426)
.+++|=|.| .|-+|+.+++.|+++|++|.+..|+.++.+.+.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~ 46 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVK 46 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHH
Confidence 445788887 599999999999999999999999887665543
No 496
>PRK08219 short chain dehydrogenase; Provisional
Probab=82.07 E-value=2.3 Score=39.23 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHH
Q 043238 6 LSRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLD 47 (426)
Q Consensus 6 ~~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~ 47 (426)
+++|-|.| .|.+|..+++.|+++ ++|.+.+|++++.+++.+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~ 44 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAA 44 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHH
Confidence 45677776 599999999999999 999999999887766643
No 497
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=82.00 E-value=1.9 Score=45.19 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCcEEEEchhHHHHHHHHHHHhCCCeEEEEeCCc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPEKGFQISVYNRTT 39 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~~G~~V~vynr~~ 39 (426)
.++|.|||.|.-|...|..|++.|++|+++++.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3589999999999999999999999999999864
No 498
>PLN02214 cinnamoyl-CoA reductase
Probab=81.97 E-value=2.1 Score=43.04 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=33.4
Q ss_pred cCCCcEEEEch-hHHHHHHHHHHHhCCCeEEEEeCCccc
Q 043238 4 SALSRIGLAGL-AVMGQKLALNVPEKGFQISVYNRTTSK 41 (426)
Q Consensus 4 ~~~~~IG~IGl-G~MG~~lA~nL~~~G~~V~vynr~~~~ 41 (426)
.++++|-|.|. |..|+.++..|+++|++|.+..|+.++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 34567999986 999999999999999999999998765
No 499
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=81.91 E-value=1.7 Score=47.80 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCcEEEEchhHHHHHHHHHHHh-CCCeEEEEeCCcc
Q 043238 6 LSRIGLAGLAVMGQKLALNVPE-KGFQISVYNRTTS 40 (426)
Q Consensus 6 ~~~IG~IGlG~MG~~lA~nL~~-~G~~V~vynr~~~ 40 (426)
..+|-|||.|..|..+|..|++ .|.+|.++++.++
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4589999999999999999999 4999999998875
No 500
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.79 E-value=2.9 Score=40.99 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=35.1
Q ss_pred CcEEEEc-hhHHHHHHHHHHHhCCCeEEEEeCCccchHHHHHh
Q 043238 7 SRIGLAG-LAVMGQKLALNVPEKGFQISVYNRTTSKVDETLDR 48 (426)
Q Consensus 7 ~~IG~IG-lG~MG~~lA~nL~~~G~~V~vynr~~~~~~~l~~~ 48 (426)
+.+-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~ 52 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAE 52 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 3455555 58899999999999999999999999988777654
Done!