BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043239
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 129/234 (55%), Gaps = 3/234 (1%)
Query: 21 LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAG 80
L +RF L A FL+ A S+RA++ EIV + G
Sbjct: 40 LDKRFKLFRYWTQPAQ--RDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG 97
Query: 81 IDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAY 140
+D VDL +C +G+ VTN + ++D AD D++VR G W G +
Sbjct: 98 LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAW-KFGDF 156
Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
L + GKRVGI+GLG IG VA+R F C I+Y SR KKP +Y +Y +V LA++S
Sbjct: 157 KLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNS 216
Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
D+L+V C LT ET H+IN++V+ ALG +GV+IN+GRG +DE ELV LV G L
Sbjct: 217 DILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL 270
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
+AG D++DL+E +RGI VT SE A++ D+F+R G W H
Sbjct: 72 SAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH 131
Query: 138 GAYPLG----STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---Y 190
G +L GK+VGI+G+G+IG +A+RL+PFG + Y SR +K V Y
Sbjct: 132 AKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARY 191
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG-VIINVGRGALIDEKELVHFL 249
++ L SD++I+ LT +T+H+IN++ + L EG ++N+GRGAL+DEK + +
Sbjct: 192 MDIDELLEKSDIVILALPLTRDTYHIINEERVKKL--EGKYLVNIGRGALVDEKAVTEAI 249
Query: 250 VRGSL 254
+G L
Sbjct: 250 KQGKL 254
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 97/182 (53%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
I+ + G D VDL RRR I VT ++D AD DR VR G
Sbjct: 96 IIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREG 155
Query: 133 LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN 192
W PLG + GKR+G++GLG IG +A R FG S+ Y +R GV + + +
Sbjct: 156 RWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWIAHQS 215
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
LA DSDVL VC A + T ++++ ++ ALG EG+++NV RG ++DE L+ L G
Sbjct: 216 PVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSG 275
Query: 253 SL 254
++
Sbjct: 276 TI 277
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 5/188 (2%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
+++ + GIDH+ L E ++RGI V + ++ A+ V+N
Sbjct: 78 KVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKN 137
Query: 132 GLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPF 189
G W L G L VGI+GLG IG +A+RL PFG YT R+ +P + F
Sbjct: 138 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 197
Query: 190 YA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
A + LAA SD ++V C+LT T + NKD + + V IN+ RG ++++ +L
Sbjct: 198 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLY 257
Query: 247 HFLVRGSL 254
L G +
Sbjct: 258 QALASGKI 265
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 5/188 (2%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
+++ + GIDH+ L E ++RGI V + ++ A+ V+N
Sbjct: 76 KVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKN 135
Query: 132 GLWPDHGAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPF 189
G W L G L VGI+GLG IG +A+RL PFG YT R+ +P + F
Sbjct: 136 GGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 195
Query: 190 YA---NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
A + LAA SD ++V C+LT T + NKD + V IN+ RG ++++ +L
Sbjct: 196 QAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLY 255
Query: 247 HFLVRGSL 254
L G +
Sbjct: 256 QALASGKI 263
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPD- 136
+ G+DHVDL+ R RGI VT+ +E AD + R+GLW
Sbjct: 73 SVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAW 132
Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGL 196
H LG L G +G+VG+G IG VAKR + FG + Y +R KP + YPF ++ L
Sbjct: 133 HPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP-LPYPFL-SLEEL 190
Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
++DV+ + LT ETH ++N++ + A+ + +++N RGAL+D + LV L RG L
Sbjct: 191 LKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHL 247
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
IV G D++D++E +RGI VTN + ++ AD DRFVR+G
Sbjct: 70 IVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSG 129
Query: 133 LWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
W H + LG + GK +GI+GLG IG +AKR F I Y SR +K V
Sbjct: 130 EWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVER 189
Query: 188 PFYAN---VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKE 244
A + L +SD +++ LT ET+H+IN++ + + K ++IN+ RG ++D
Sbjct: 190 ELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNA 249
Query: 245 LVHFLVRG 252
LV L G
Sbjct: 250 LVKALKEG 257
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
IV G D++D++E +RGI VTN + ++ AD DRFVR+G
Sbjct: 70 IVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSG 129
Query: 133 LWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
W H + LG + GK +GI+GLG IG +AKR F I Y SR +K V
Sbjct: 130 EWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYYSRTRKEEVER 189
Query: 188 PFYAN---VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKE 244
A + L +SD +++ LT ET+H+IN++ + K ++IN+ RG ++D
Sbjct: 190 ELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNA 249
Query: 245 LVHFLVRG 252
LV L G
Sbjct: 250 LVKALKEG 257
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G DH+DL C+ RGI V NA + + A+ ++ +R WP G
Sbjct: 77 GFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWP--GW 134
Query: 140 YPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-----TSRKKKPGVSYPFYA 191
PL G L K +GI G GSIG +AKR F I Y S + F+
Sbjct: 135 EPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHD 194
Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251
++ L + S + T ET + NK + +L + +++N RG L+D + +V L
Sbjct: 195 SLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA 254
Query: 252 GSLV 255
G L
Sbjct: 255 GRLA 258
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
+ G DH+D R GI V + + S+ A+ DR VR+G WP
Sbjct: 102 SVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGW 161
Query: 138 GAYPL-GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK-----KPGVSYPFYA 191
G L G L G+R+GI G G IG +A R FG +I Y +R + + G Y +
Sbjct: 162 GPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIY--HD 219
Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
+ L SD+ ++ E ++ D + + + V+IN+ RG LI++ L+ L
Sbjct: 220 TLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL 277
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 78 TAGI--DHVDLQECRRRGILVTN-AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLW 134
TAGI DH+DLQ G+ V G+ D ++ V+ G W
Sbjct: 92 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVK-GEW 150
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR-------KKKPGVSY 187
G L GK +G VG G IG + +RL PFGC++ Y R +K+ G
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAK- 209
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
F +++ + DV+++ LTE+T M NK+++ L K +I+N RGA+++ + +V
Sbjct: 210 -FVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 268
Query: 248 FLVRGSL 254
+ G +
Sbjct: 269 AVESGHI 275
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 13/187 (6%)
Query: 78 TAGI--DHVDLQECRRRGILVTN-AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLW 134
TAGI DH+DLQ G+ V G+ D ++ V+ G W
Sbjct: 98 TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVK-GEW 156
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR-------KKKPGVSY 187
G L GK +G VG G IG + +RL PFGC++ Y R +K+ G
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAK- 215
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
F +++ + DV+++ LTE+T M NK+++ L K +I+N RGA+++ + +V
Sbjct: 216 -FVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 274
Query: 248 FLVRGSL 254
+ G +
Sbjct: 275 AVESGHI 281
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 84/229 (36%), Gaps = 7/229 (3%)
Query: 34 SADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGI--DHVDLQECRR 91
S D S L +H I+ ++ + TAGI DHVDLQ
Sbjct: 76 SKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAID 135
Query: 92 RGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGGKRV 151
I V S A++ + RNG W + G V
Sbjct: 136 NNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHV 195
Query: 152 GIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVC 206
G V G IG V + L PF + YT R + P ++ ++A + DV+ +
Sbjct: 196 GTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLN 255
Query: 207 CALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255
C L ET HMIN + + + ++N RG L D +V L G L
Sbjct: 256 CPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLA 304
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
+++ + G+D++D++ + +GI V NA A S A+ + DR +R
Sbjct: 68 KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI----AYTSRKKKPGVSY 187
G+W A +G L GK +GI+G G IG +VAK G +I Y + ++ V+
Sbjct: 128 GVWAKKEA--MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNG 185
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
F ++ L +SDV+ + L E T+H+IN++ + + K ++IN RG ++D LV
Sbjct: 186 KF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVK 244
Query: 248 FLVRG 252
L G
Sbjct: 245 ALKEG 249
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 84/229 (36%), Gaps = 7/229 (3%)
Query: 34 SADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGI--DHVDLQECRR 91
S D S L +H I+ ++ + TAGI DHVDLQ
Sbjct: 75 SKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAID 134
Query: 92 RGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGGKRV 151
I V S A++ + RNG W + G V
Sbjct: 135 NNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHV 194
Query: 152 GIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVC 206
G V G IG V + L PF + YT R + P ++ ++A + DV+ +
Sbjct: 195 GTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLN 254
Query: 207 CALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255
C L ET HMIN + + + ++N RG L D +V L G L
Sbjct: 255 CPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLA 303
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
+ G DH+DL C+++GILVT+ E A++ I+ V+ L
Sbjct: 72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKK-LNFSQ 130
Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP--FYANVSG 195
+ L L +G++G G IGS VA + FG + K+ + Y ++
Sbjct: 131 DSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDLKEKGCVYTSLDE 190
Query: 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
L +SDV+ + T+ETHH IN++ + +L K+GV +IN RG ++D L RG
Sbjct: 191 LLKESDVISLHVPYTKETHHXINEERI-SLXKDGVYLINTARGKVVDTDALYRAYQRGKF 249
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G D+ D+ C RG+ +T + + A+ + D FVR+G +
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK-------KKPGVSYPFYAN 192
G+ L VG +G+G+IG +A RL +G ++ Y +RK ++ G+
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
S L A SD +++ L +T H++N +++ + +++N RG+++DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
L
Sbjct: 254 QL 255
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G D+ D+ C RG+ +T + + A+ + D FVR+G +
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK-------KKPGVSYPFYAN 192
G+ L VG +G+G+IG +A RL +G ++ Y +RK ++ G+
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
S L A SD +++ L +T H++N +++ + +++N RG+++DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
L
Sbjct: 254 QL 255
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
++V + G+D+VDL+ R+GILV N N S A+ +++
Sbjct: 91 QVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKD 150
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYA 191
G W +G+ L GK +GI+GLG IG EVA R+ FG P VS F
Sbjct: 151 GKWERKKF--MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASF-- 206
Query: 192 NVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELV 246
V L + D + V L T ++N + K ++N RG ++DE L+
Sbjct: 207 GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALL 266
Query: 247 HFLVRGS 253
L G
Sbjct: 267 RALQSGQ 273
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G D+ D+ C RG+ +T + + A+ + D FVR+G +
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-------TSRKKKPGVSYPFYAN 192
G+ L VG +G+G+IG +A RL +G ++ Y T +++ G+
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
S L A SD +++ L +T H++N +++ + +++N RG+++DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
L
Sbjct: 254 QL 255
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Query: 78 TAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
TAGI DHVDLQ R + V S A++ + R G W
Sbjct: 119 TAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN 178
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFY 190
L VG V G IG V +RL PF + YT R + P ++ ++
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH 238
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
A + DV+ + C L ET HMIN + + + I+N RG L D + L
Sbjct: 239 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298
Query: 251 RGSL 254
G L
Sbjct: 299 SGRL 302
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G D+ D+ C RG+ +T + + A+ + D FVR+G +
Sbjct: 77 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-------TSRKKKPGVSYPFYAN 192
G+ L VG +G+G+IG +A RL +G ++ Y T +++ G+
Sbjct: 137 RFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ---VA 193
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
S L A SD +++ L +T H++N +++ + +++N RG+++DE ++ L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 253 SL 254
L
Sbjct: 254 QL 255
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Query: 78 TAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
TAGI DHVDLQ R + V S A++ + R G W
Sbjct: 120 TAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN 179
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFY 190
L VG V G IG V +RL PF + YT R + P ++ ++
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH 239
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
A + DV+ + C L ET HMIN + + + I+N RG L D + L
Sbjct: 240 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 299
Query: 251 RGSL 254
G L
Sbjct: 300 SGRL 303
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Query: 78 TAGI--DHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
TAGI DHVDLQ R + V S A++ + R G W
Sbjct: 120 TAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWN 179
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFY 190
L VG V G IG V +RL PF + YT R + P ++ ++
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH 239
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
A + DV+ + C L ET HMIN + + + I+N RG L D + L
Sbjct: 240 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 299
Query: 251 RGSL 254
G L
Sbjct: 300 SGRL 303
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 18/228 (7%)
Query: 29 DPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGIDHVDLQE 88
D LL + + L R A++V A + +IV + G+D+VD+
Sbjct: 36 DKLLAAVPEADALLVRSATTVDAEVLAAAPKL-----------KIVARAGVGLDNVDVDA 84
Query: 89 CRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGG 148
RG+LV NA + A++ + D +R W G+ + G
Sbjct: 85 ATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS--GTEIFG 142
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLI 204
K VG+VGLG IG VA+R+ FG + Y S + + ++ L A +D +
Sbjct: 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDLLARADFIS 201
Query: 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
V T ET +I+K+ + +I+N RG L+DE L + G
Sbjct: 202 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 249
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 18/228 (7%)
Query: 29 DPLLHSADSTHSFLSRHASSVRAILCXXXXXXXXXXXXXXXXXEIVVGSTAGIDHVDLQE 88
D LL + + L R A++V A + +IV + G+D+VD+
Sbjct: 35 DKLLAAVPEADALLVRSATTVDAEVLAAAPKL-----------KIVARAGVGLDNVDVDA 83
Query: 89 CRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGAYPLGSTLGG 148
RG+LV NA + A++ + D +R W G+ + G
Sbjct: 84 ATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS--GTEIFG 141
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIA----YTSRKKKPGVSYPFYANVSGLAADSDVLI 204
K VG+VGLG IG VA+R+ FG + Y S + + ++ L A +D +
Sbjct: 142 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDLLARADFIS 200
Query: 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
V T ET +I+K+ + +I+N RG L+DE L + G
Sbjct: 201 VHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 248
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
I+V +G D++D++ GI V N A E+ AD + + + +R G
Sbjct: 88 IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREG 147
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
+ + + G+ +GI+GLG +G VA R FG ++ + GV
Sbjct: 148 TRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER 207
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
+ + L SD + + C L E HH+IN + + + ++N RG L+DEK
Sbjct: 208 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 267
Query: 244 ELVHFLVRGSL 254
L L G +
Sbjct: 268 ALAQALKEGRI 278
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G D+ D+ C RG+ +T + + A+ + D FVR+G +
Sbjct: 78 GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY-------TSRKKKPGVSYPFYAN 192
G+ L VG +G G+IG A RL +G ++ Y T +++ G+
Sbjct: 138 RFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRLGLRQ---VA 194
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
S L A SD +++ L +T H++N +++ + +++N RG+++DE ++ L RG
Sbjct: 195 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 254
Query: 253 SL 254
L
Sbjct: 255 QL 256
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
I+V +G D++D++ GI V N A E+ AD + + + +R G
Sbjct: 91 IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREG 150
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
+ + + G+ +GI+GLG +G VA R FG ++ + G+
Sbjct: 151 TRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIER 210
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
+ + L SD + + C L E HH+IN + + + ++N RG L+DEK
Sbjct: 211 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 270
Query: 244 ELVHFLVRGSL 254
L L G +
Sbjct: 271 ALAQALKEGRI 281
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
I+V +G D++D++ GI V N A E+ AD + + + +R G
Sbjct: 91 IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREG 150
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
+ + + G+ +GI+GLG +G VA R FG ++ + G+
Sbjct: 151 TRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIER 210
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
+ + L SD + + C L E HH+IN + + + ++N RG L+DEK
Sbjct: 211 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 270
Query: 244 ELVHFLVRGSL 254
L L G +
Sbjct: 271 ALAQALKEGRI 281
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 9/191 (4%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
I+V +G D++D++ GI V N A E+ AD + + + +R G
Sbjct: 91 IIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREG 150
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
+ + + G+ +GI+GL +G VA R FG ++ + G+
Sbjct: 151 TRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIER 210
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
+ + L SD + + C L E HH+IN + + + ++N RG L+DEK
Sbjct: 211 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 270
Query: 244 ELVHFLVRGSL 254
L L G +
Sbjct: 271 ALAQALKEGRI 281
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 9/191 (4%)
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG 132
++V +G D+VD++ GI V N +A E+ AD + + + +R G
Sbjct: 72 VIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREG 131
Query: 133 -----LWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY 187
+ + + G+ +G++G G G VA R FG S+ + + G+
Sbjct: 132 TRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIER 191
Query: 188 PF----YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243
+ L SD + + C L E HH+IN + + + ++N RG L+DEK
Sbjct: 192 SLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEK 251
Query: 244 ELVHFLVRGSL 254
L L G +
Sbjct: 252 ALAQALKEGRI 262
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 2/176 (1%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G D++D+ ++ GI ++N A++ + ++ G + G
Sbjct: 78 GTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT 137
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYANVSGLAA 198
+ +G LG + VG++G G IG K FG IAY K Y ++ L
Sbjct: 138 F-IGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFK 196
Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
SDV+ + E+ H+IN+ + ++IN R LID + ++ L G L
Sbjct: 197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 77 STAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPD 136
+ AG+D + CRR +TN F ++Y + LW
Sbjct: 74 TYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS 132
Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR--KKKPGVSYPFY-ANV 193
H L G+ + I+G GSIG +A FG + SR +++ G + +
Sbjct: 133 HPY----QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPAL 188
Query: 194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253
+ + A +DV++ T ETHH+ ++ NVGRG I+E +L+ L G
Sbjct: 189 NKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGK 248
Query: 254 LVELVL 259
L VL
Sbjct: 249 LGMAVL 254
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 13/182 (7%)
Query: 83 HVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHG---- 138
H+DL+ C +G++V G A+ +++G W G
Sbjct: 88 HIDLEACTDKGVVVLE-GKGSPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKST 146
Query: 139 ----AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY----TSRKKKPGVSYPFY 190
+ +G L G+ +GI G G IG VA FG ++ S+++ +
Sbjct: 147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVA 206
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250
+ L SDVL V L +ET +I +T + + +N R L++E +V L
Sbjct: 207 ESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALN 266
Query: 251 RG 252
RG
Sbjct: 267 RG 268
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
+ G + V+L+ R+RGI V NA + + A+ G W
Sbjct: 88 SVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT 147
Query: 138 GAYPLGS-TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY--TSRKKKPGVSYPFYANVS 194
+GS + GK +GIVG G+IGS+V G ++ Y TS K + G P A++
Sbjct: 148 A---IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKP-AASLD 203
Query: 195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
L SDV+ + ++ T +I + + + K +IN RG+ +D + L L G L
Sbjct: 204 ELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHL 263
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 80 GIDHVDLQECRRRGILVTN----AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGL-W 134
G+D++D+ + + G +TN + NA +E A + ++ R+ L W
Sbjct: 80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAA---IQAARILRQDKAMDEKVARHDLRW 136
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFY--AN 192
A +G + + VG+VG G IG + + FG + + P + Y +
Sbjct: 137 ----APTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
+ L +DV+ + HMIN + + + ++ VI+NV RG L+D ++ L G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 253 SL 254
+
Sbjct: 253 KI 254
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 80 GIDHVDLQECRRRGILVTN----AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGL-W 134
G+D++D+ + + G +TN + NA +E A + ++ R+ L W
Sbjct: 80 GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAA---IQAARILRQDKAMDEKVARHDLRW 136
Query: 135 PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFY--AN 192
A +G + + VG+VG G IG + + FG + + P + Y +
Sbjct: 137 ----APTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
+ L +DV+ + HMIN + + + ++ VI+NV RG L+D ++ L G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 253 SL 254
+
Sbjct: 253 KI 254
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGV-SYPFYANVSGLAADSDVLIVCC 207
VGI G G +G++VA+ L +G + SR +K PGV SY + + VLI
Sbjct: 142 VGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLL 201
Query: 208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM 267
T +T +IN +++ L ++N+ RG + E +L+ L G L L +
Sbjct: 202 PNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPL 261
Query: 268 CQRSCL 273
Q S L
Sbjct: 262 PQESPL 267
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
++ + AG D +DL RG+ N+ A +D S +R R
Sbjct: 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 132 GLWPDHGAY-----PLGSTLGGKR---VGIVGLGSIGSEVAKR--------LVPFGCSIA 175
G D + +G + R +G VGLG+I E+A++ LV + + A
Sbjct: 142 G---DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA 198
Query: 176 YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235
+K G ++ LA SD + V + THH+I++ A+ I+N
Sbjct: 199 DAETEKALGAER--VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA 256
Query: 236 RGALIDEKELVHFLVRGSLV 255
RG +I + L+ L G L+
Sbjct: 257 RGPVISQDALIAALKSGKLL 276
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
++ + AG D +DL RG+ N+ A +D S +R R
Sbjct: 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 132 GLWPDHGAY-----PLGSTLGGKR---VGIVGLGSIGSEVAKR--------LVPFGCSIA 175
G D + +G + R +G VGLG+I E+A++ LV + + A
Sbjct: 142 G---DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA 198
Query: 176 YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235
+K G ++ LA SD + V + THH+I++ A+ I+N
Sbjct: 199 DAETEKALGAER--VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA 256
Query: 236 RGALIDEKELVHFLVRGSLV 255
RG +I + L+ L G L+
Sbjct: 257 RGPVISQDALIAALKSGKLL 276
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
++ + AG D +DL RG+ N+ A +D S +R R
Sbjct: 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 132 GLWPDHGAY-----PLGSTLGGKR---VGIVGLGSIGSEVAKR--------LVPFGCSIA 175
G D + +G + R +G VGLG+I E+A++ LV + + A
Sbjct: 142 G---DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA 198
Query: 176 YTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235
+K G ++ LA SD + V + THH+I++ A+ I+N
Sbjct: 199 DAETEKALGAER--VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA 256
Query: 236 RGALIDEKELVHFLVRGSLV 255
RG +I + L+ L G L+
Sbjct: 257 RGPVISQDALIAALKSGKLL 276
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 12/193 (6%)
Query: 72 EIVVGSTAGIDHVDL----QECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDR 127
++VV + G DH+DL Q ++ +L N S A++
Sbjct: 87 KLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSV--AEHVVMTMLVLVRNFVPAHE 144
Query: 128 FVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPG-- 184
+ N W + GK + +G G IG V +RLVPF + Y + P
Sbjct: 145 QIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA 204
Query: 185 ---VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
V N+ L A +D++ V L T +INK++++ K ++N RGA+
Sbjct: 205 EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICV 264
Query: 242 EKELVHFLVRGSL 254
+++ L G L
Sbjct: 265 AEDVAAALESGQL 277
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 12/193 (6%)
Query: 72 EIVVGSTAGIDHVDL----QECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDR 127
++VV + G DH+DL Q ++ +L N S A++
Sbjct: 86 KLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSV--AEHVVMTMLVLVRNFVPAHE 143
Query: 128 FVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPG-- 184
+ N W + GK + +G G IG V +RLVPF + Y + P
Sbjct: 144 QIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA 203
Query: 185 ---VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
V N+ L A +D++ V L T +INK++++ K ++N RGA+
Sbjct: 204 EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICV 263
Query: 242 EKELVHFLVRGSL 254
+++ L G L
Sbjct: 264 AEDVAAALESGQL 276
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 17/178 (9%)
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
TAG+DH+ + VT AGNA G++ + R ++ G
Sbjct: 58 TAGLDHLPWESIPPH---VTVAGNA----GSNADAVAEFALALLLAPYKRIIQYGEKXKR 110
Query: 138 GAY------PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYA 191
G Y PL + G++V ++GLG IG+ V K L G + SR K G + F
Sbjct: 111 GDYGRDVEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG-PWRFTN 166
Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
++ ++ + L + T ++ + ++ V +NVGR ++D ++ L
Sbjct: 167 SLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRIL 224
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 12/186 (6%)
Query: 80 GIDHVDLQECRRRGILVTN----AGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP 135
G+D++D+ + + G +TN + NA +E A + + R+ W
Sbjct: 80 GVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAK--RDLRW- 136
Query: 136 DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYAN-V 193
A +G + + VG+VG G IG + + FG IAY K +Y + +
Sbjct: 137 ---APTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSL 193
Query: 194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253
L +DV+ + HMIN + + VI+N RG L+D ++ L G
Sbjct: 194 DDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGK 253
Query: 254 LVELVL 259
+ V+
Sbjct: 254 IFGFVM 259
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF--YANVSGLAADSDVLIVCCA 208
VG++G+G IGS VA+ G + P PF Y + + ++D++ +
Sbjct: 151 VGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFE-PFLTYTDFDTVLKEADIVSLHTP 209
Query: 209 LTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
L T +MI + + + K +IN RG L+D L+ L G +
Sbjct: 210 LFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEI 255
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 72 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
+I+ + G+D++D +E +R I V A A ++ + + ++
Sbjct: 70 KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI-AY---TSRKKKPGVSY 187
G++ G L GK +GIVG G IG++V G + AY R+K ++
Sbjct: 130 GIFKKIE----GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINA 185
Query: 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247
++ L +SDV+ + ++++ +I+ + +I+N R ++ K L+
Sbjct: 186 KA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 248 FLVRGSL 254
++ +G +
Sbjct: 245 YIKKGKV 251
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 78 TAGIDHVDLQECRRRGILVTNA----GNAFSEDGADYXXXXXXXXXXXXSSIDRFVR--N 131
+AG+D++ L+ + G++V N +A SE +++ VR +
Sbjct: 69 SAGVDYLPLKALQAAGVVVANTSGIHADAISES--------------VLAAMLSVVRGYH 114
Query: 132 GLWPDH-----GAYPLG-STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV 185
W + A P+ STL G+++ I G G IG +A + G + + P
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD 174
Query: 186 SYPFYANVSGLAADS-----DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI 240
F+ V+ A + ++ LT THH+ + ++ ++ ++IN+GRG +
Sbjct: 175 H--FHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAV 232
Query: 241 DEKELV 246
D L+
Sbjct: 233 DTTALM 238
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 3/163 (1%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G + VDL +RGI V NA + + A+ + G+W A
Sbjct: 84 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 143
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFYANVSGLAA 198
+ GK++GI+G G IG+++ G + Y K P + ++S L
Sbjct: 144 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 201
Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
SDV+ + T +M+ ++ + ++IN RG ++D
Sbjct: 202 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 244
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 73 IVVGSTA-GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
+ +G+ A G + VDL +RGI V NA + + A+ +
Sbjct: 77 VAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHR 136
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFY 190
G+W A + GK++GI+G G IG+++ G + Y K P +
Sbjct: 137 GVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQV 194
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
++S L SDV+ + T +M+ ++ + ++IN RG ++D
Sbjct: 195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 245
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 73 IVVGSTA-GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
+ +G+ A G + VDL +RGI V NA + + A+ +
Sbjct: 77 VAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHR 136
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFY 190
G+W A + GK++GI+G G IG+++ G + Y K P +
Sbjct: 137 GVWNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQV 194
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
++S L SDV+ + T +M+ ++ + ++IN RG ++D
Sbjct: 195 QHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 245
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDV 202
G +L + +GIVG+G++GS + RL G + + + L ++DV
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADV 173
Query: 203 LIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV 258
L L ++ T H+ ++ ++ L ++IN RG ++D L+ L G + +V
Sbjct: 174 LTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVV 233
Query: 259 L 259
L
Sbjct: 234 L 234
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 10/186 (5%)
Query: 74 VVGSTAGIDHVDLQECRRRGILVT----NAGNAFSEDGADYXXXXXXXXXXXXSSIDRFV 129
++ TAG DH+D + + G + + NA +E S R
Sbjct: 73 ILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTS---RTA 129
Query: 130 RNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-YP 188
+ D A+ + VG+VGLG IG A+ G ++ + G+ Y
Sbjct: 130 KKNFKVD--AFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYC 187
Query: 189 FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248
++ + SD++ + +E ++ +D + + +++N RG L+D + ++
Sbjct: 188 TQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEA 247
Query: 249 LVRGSL 254
+ G L
Sbjct: 248 VESGKL 253
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 139 AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP 169
A+P G +L G+RVG++G GS G +V L P
Sbjct: 202 AWPEGKSLAGRRVGVIGTGSTGQQVITSLAP 232
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 139 AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP 169
A+P G +L G+RVG++G GS G +V L P
Sbjct: 169 AWPEGKSLAGRRVGVIGTGSTGQQVITSLAP 199
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 3/163 (1%)
Query: 80 GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA 139
G + VDL +RGI V NA + + A+ + G+W A
Sbjct: 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFYANVSGLAA 198
+ GK++GI+G G IG+++ G + Y K P + ++S L
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
SDV+ + T + ++ ++IN RG ++D
Sbjct: 203 XSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVD 245
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 7/179 (3%)
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDH 137
+AG+DH+D+ +L +NAG A+S A++ + + G++
Sbjct: 57 SAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAKNILENNELXKAGIFRQS 115
Query: 138 GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYPFYANVSGL 196
+ L GK +GI+G G IG VA FG IAYT V + + L
Sbjct: 116 PT----TLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSVDQNVDV-ISESPADL 170
Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255
SD +++ LT++T +N ++ K I+NV R ++ + + + FL S V
Sbjct: 171 FRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDV 229
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 12/173 (6%)
Query: 91 RRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNG--LWPDHGAYPLGSTLGG 148
+RGI V G F+E A+ D + G LW G + G
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNAS-ARLIAG 176
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAY------TSRKKKPGVSYPFYANVSGLAADSDV 202
+GIVG G +G + + L F I S ++ GV A++ + SD
Sbjct: 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVE---PASLEDVLTKSDF 233
Query: 203 LIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255
+ V A+T E + + ++ + I + R ++D L + G +V
Sbjct: 234 IFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIV 286
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 190 YANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKEL 245
+ ++ L A++DV+ + L + T H++++ + AL ++N RGA++D + L
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 246 VHFLVRGSLVELVL 259
L G+ +E+ L
Sbjct: 218 RRLLEGGADLEVAL 231
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 150 RVGIV--GLGSIGSEVAKRLVPFGCSIAYTSRK--KKPGVSYPFYANVSGLAADSDVLIV 205
+V IV G IG + K L+ G ++ SRK + + AN+ + I
Sbjct: 19 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQ 78
Query: 206 CCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265
C EE + + K + GK ++N G G + E H +G L T
Sbjct: 79 CNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAE--HISSKGWHAVLETNLTGTF 136
Query: 266 LMCQRSCLHWI 276
MC+ W+
Sbjct: 137 YMCKAVYSSWM 147
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCA 208
++ G +GLG +GS +AK LV GCS+ +R P + A + AA ++ C
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNR--SPEKAEELAALGAERAATPXEVVESCP 59
Query: 209 LTEETHHMINKDVMTALGKEGVIINVGRG 237
+T GK GV+ +G G
Sbjct: 60 VTFAMLADPAAAEEVCFGKHGVLEGIGEG 88
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 4/171 (2%)
Query: 73 IVVGSTA-GIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRN 131
+ +G+ A G + VDL +RGI V NA + + A+ +
Sbjct: 71 VAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHR 130
Query: 132 GLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGVSYPFY 190
G+ A + GK++GI+G G IG+++ G + Y K P +
Sbjct: 131 GVGNKLAAGSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQV 188
Query: 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
++S L SDV+ + T + ++ ++IN RG ++D
Sbjct: 189 QHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVD 239
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 134 WP-DHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPF 170
WP D P G GKRVG++G G+ G +E AK L F
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVF 214
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK------PGVSYPFYANVSGLAADSDV 202
KRV I+G G IG E+A L FG + + + + P +S N+ ++ +
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHL 226
Query: 203 LIVCCALTEETH--HMINKDVMTALGKEGVIINVGR 236
AL + ++ +D G + VI VGR
Sbjct: 227 EFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR 262
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 125 IDRF----VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPFGCS 173
+DRF V WP G GKRVG++G GS G +E A++L F S
Sbjct: 169 LDRFTGDIVHTARWPHDGV-----DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
Query: 174 IAYT 177
Y+
Sbjct: 224 ANYS 227
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 125 IDRF----VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPFGCS 173
+DRF V WP G GKRVG++G GS G +E A++L F S
Sbjct: 169 LDRFTGDIVHTARWPHDGV-----DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
Query: 174 IAYT 177
Y+
Sbjct: 224 ANYS 227
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 125 IDRF----VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPFGCS 173
+DRF V WP G GKRVG++G GS G +E A++L F S
Sbjct: 169 LDRFTGDIVHTARWPHDGV-----DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
Query: 174 IAYT 177
Y+
Sbjct: 224 ANYS 227
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAY 176
+++GI+GLG++G+ VA L+ G + Y
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDY 29
>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
pdb|3TWO|B Chain B, The Crystal Structure Of Cad From Helicobacter Pylori
Complexed With Nadp(H)
Length = 348
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR---KKKPGVSY---PFYANVSGLAADSD 201
G +VG+ G G +GS K V G ++ +R KK+ +S FY + + D
Sbjct: 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELD 236
Query: 202 VLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235
+I T TH+ + KD + L G + VG
Sbjct: 237 FIIS----TIPTHYDL-KDYLKLLTYNGDLALVG 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,823,210
Number of Sequences: 62578
Number of extensions: 287317
Number of successful extensions: 918
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 87
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)