Query 043239
Match_columns 286
No_of_seqs 216 out of 1718
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 4.5E-63 9.7E-68 453.6 25.2 245 39-286 36-286 (324)
2 PRK08410 2-hydroxyacid dehydro 100.0 3.8E-62 8.2E-67 447.2 28.3 266 15-286 13-287 (311)
3 COG1052 LdhA Lactate dehydroge 100.0 5.8E-62 1.3E-66 445.9 26.1 273 11-286 9-292 (324)
4 PRK06487 glycerate dehydrogena 100.0 3.3E-61 7.3E-66 442.0 29.1 268 13-286 13-288 (317)
5 PRK15409 bifunctional glyoxyla 100.0 1.9E-61 4.2E-66 444.0 27.2 270 15-286 13-289 (323)
6 PRK06932 glycerate dehydrogena 100.0 4.2E-60 9E-65 434.1 26.6 245 40-286 36-290 (314)
7 PLN03139 formate dehydrogenase 100.0 2.3E-59 4.9E-64 437.3 27.9 268 17-286 67-344 (386)
8 PRK13243 glyoxylate reductase; 100.0 2.3E-59 5E-64 432.6 27.1 271 14-286 12-292 (333)
9 PRK07574 formate dehydrogenase 100.0 7.1E-59 1.5E-63 434.2 27.3 265 20-286 63-337 (385)
10 PRK11790 D-3-phosphoglycerate 100.0 1.4E-58 3.1E-63 437.4 27.1 268 14-286 20-296 (409)
11 PLN02928 oxidoreductase family 100.0 2.8E-57 6E-62 420.5 27.8 240 42-286 55-315 (347)
12 PLN02306 hydroxypyruvate reduc 100.0 7E-57 1.5E-61 421.6 27.4 268 18-286 30-324 (386)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 1.4E-56 3.1E-61 436.3 26.4 265 15-286 10-281 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 6.2E-56 1.3E-60 431.8 26.0 243 40-286 34-282 (526)
15 PRK12480 D-lactate dehydrogena 100.0 2E-55 4.4E-60 405.5 23.5 244 42-286 39-300 (330)
16 KOG0068 D-3-phosphoglycerate d 100.0 5.5E-56 1.2E-60 395.1 18.7 270 12-286 14-291 (406)
17 PRK15438 erythronate-4-phospha 100.0 3.1E-54 6.6E-59 401.4 25.4 242 17-286 12-258 (378)
18 PRK08605 D-lactate dehydrogena 100.0 8.4E-54 1.8E-58 395.5 24.6 243 43-286 40-302 (332)
19 PRK00257 erythronate-4-phospha 100.0 3.2E-53 6.9E-58 395.6 23.6 222 44-286 33-258 (381)
20 PRK06436 glycerate dehydrogena 100.0 9E-53 2E-57 383.0 24.9 225 47-285 33-258 (303)
21 PRK15469 ghrA bifunctional gly 100.0 9.4E-53 2E-57 384.8 24.1 232 47-286 37-279 (312)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 1.6E-51 3.4E-56 373.7 21.0 235 50-285 63-304 (336)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 8.3E-44 1.8E-48 301.8 13.0 172 112-284 1-178 (178)
24 KOG0067 Transcription factor C 99.9 9E-27 2E-31 210.4 9.9 237 46-286 71-316 (435)
25 PTZ00075 Adenosylhomocysteinas 99.8 2.5E-20 5.5E-25 177.1 13.0 169 77-273 198-372 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 2E-20 4.4E-25 169.6 9.9 183 45-262 51-264 (287)
27 PRK08306 dipicolinate synthase 99.7 4.7E-16 1E-20 141.8 12.9 187 43-264 50-267 (296)
28 COG2084 MmsB 3-hydroxyisobutyr 99.7 3.7E-16 8.1E-21 140.5 10.5 129 149-277 1-137 (286)
29 PF00389 2-Hacid_dh: D-isomer 99.7 1E-16 2.2E-21 129.3 5.7 95 13-111 7-101 (133)
30 PF03446 NAD_binding_2: NAD bi 99.6 4E-16 8.7E-21 130.3 3.6 125 149-273 2-132 (163)
31 PLN02494 adenosylhomocysteinas 99.6 3E-15 6.5E-20 142.3 9.3 116 145-266 251-374 (477)
32 TIGR00936 ahcY adenosylhomocys 99.5 7.8E-14 1.7E-18 131.5 10.6 116 145-265 192-313 (406)
33 PRK13403 ketol-acid reductoiso 99.5 5.1E-14 1.1E-18 128.1 8.3 88 144-233 12-104 (335)
34 PLN02350 phosphogluconate dehy 99.5 8.9E-14 1.9E-18 134.3 9.4 127 149-277 7-148 (493)
35 TIGR01505 tartro_sem_red 2-hyd 99.5 1.2E-13 2.5E-18 125.7 8.1 118 150-267 1-125 (291)
36 PRK15461 NADH-dependent gamma- 99.5 1.8E-13 4E-18 124.8 9.1 126 149-274 2-134 (296)
37 PRK12490 6-phosphogluconate de 99.5 2.8E-13 6.2E-18 123.8 9.6 122 149-271 1-130 (299)
38 PRK11559 garR tartronate semia 99.4 2.2E-13 4.8E-18 124.0 8.5 122 149-270 3-131 (296)
39 PRK09599 6-phosphogluconate de 99.4 1E-12 2.2E-17 120.2 9.1 122 149-271 1-130 (301)
40 PRK15059 tartronate semialdehy 99.4 1E-12 2.2E-17 119.8 9.0 128 149-276 1-134 (292)
41 KOG0409 Predicted dehydrogenas 99.4 1E-12 2.3E-17 117.1 8.2 130 147-276 34-171 (327)
42 PTZ00142 6-phosphogluconate de 99.4 2.5E-12 5.4E-17 124.0 9.5 123 149-272 2-138 (470)
43 PRK05476 S-adenosyl-L-homocyst 99.3 4.2E-12 9E-17 120.5 10.0 151 76-247 155-312 (425)
44 PLN02858 fructose-bisphosphate 99.3 3.9E-12 8.4E-17 136.0 9.6 131 147-277 3-142 (1378)
45 TIGR00872 gnd_rel 6-phosphoglu 99.3 9.5E-12 2.1E-16 113.7 9.9 121 149-271 1-129 (298)
46 TIGR01692 HIBADH 3-hydroxyisob 99.3 5.9E-12 1.3E-16 114.4 7.5 123 153-275 1-130 (288)
47 PLN02858 fructose-bisphosphate 99.3 1.7E-11 3.7E-16 131.1 10.2 130 148-277 324-462 (1378)
48 TIGR00873 gnd 6-phosphoglucona 99.3 1.3E-11 2.8E-16 119.0 8.4 122 150-272 1-135 (467)
49 PF00670 AdoHcyase_NAD: S-aden 99.3 1.1E-11 2.3E-16 102.5 6.6 99 144-247 19-123 (162)
50 PRK05479 ketol-acid reductoiso 99.2 6.1E-11 1.3E-15 109.2 8.0 91 144-237 13-109 (330)
51 PLN02712 arogenate dehydrogena 99.1 1.3E-10 2.8E-15 116.6 9.7 108 143-251 364-476 (667)
52 PLN02256 arogenate dehydrogena 99.1 6.2E-10 1.3E-14 101.9 9.5 104 147-251 35-143 (304)
53 cd00401 AdoHcyase S-adenosyl-L 99.0 1E-09 2.2E-14 104.1 9.8 100 143-247 197-302 (413)
54 PRK14619 NAD(P)H-dependent gly 99.0 9.8E-10 2.1E-14 100.8 9.3 82 147-238 3-85 (308)
55 PRK08655 prephenate dehydrogen 99.0 1.8E-09 3.9E-14 103.7 8.5 101 149-251 1-108 (437)
56 PF07991 IlvN: Acetohydroxy ac 98.9 9.9E-10 2.1E-14 90.5 5.2 85 146-232 2-92 (165)
57 TIGR00465 ilvC ketol-acid redu 98.9 3.2E-09 6.9E-14 97.6 8.4 92 146-240 1-98 (314)
58 COG0287 TyrA Prephenate dehydr 98.9 3E-09 6.5E-14 96.1 7.9 127 148-282 3-144 (279)
59 PRK14194 bifunctional 5,10-met 98.9 4.4E-09 9.6E-14 95.5 8.9 80 143-238 154-234 (301)
60 PF03807 F420_oxidored: NADP o 98.9 8.2E-10 1.8E-14 83.6 3.1 85 150-237 1-96 (96)
61 COG1023 Gnd Predicted 6-phosph 98.9 6.2E-09 1.3E-13 90.4 8.6 112 149-263 1-120 (300)
62 PRK09287 6-phosphogluconate de 98.9 2.8E-09 6E-14 102.7 7.3 113 159-272 1-126 (459)
63 PRK08818 prephenate dehydrogen 98.9 1.7E-08 3.6E-13 94.7 12.0 120 146-282 2-130 (370)
64 PLN02712 arogenate dehydrogena 98.9 4.8E-09 1E-13 105.4 8.9 106 145-251 49-159 (667)
65 PLN02545 3-hydroxybutyryl-CoA 98.9 2.6E-09 5.6E-14 97.4 6.1 99 149-250 5-132 (295)
66 PRK09260 3-hydroxybutyryl-CoA 98.9 2.5E-09 5.5E-14 97.1 5.8 110 149-262 2-141 (288)
67 PLN02688 pyrroline-5-carboxyla 98.9 8.2E-09 1.8E-13 92.5 9.0 99 149-251 1-109 (266)
68 TIGR01724 hmd_rel H2-forming N 98.8 1.2E-08 2.7E-13 92.7 9.0 86 160-246 32-127 (341)
69 PRK05225 ketol-acid reductoiso 98.8 4E-09 8.7E-14 99.9 6.0 90 144-237 32-132 (487)
70 TIGR03026 NDP-sugDHase nucleot 98.8 1.3E-08 2.8E-13 97.1 8.5 100 149-249 1-134 (411)
71 PRK14618 NAD(P)H-dependent gly 98.8 1.7E-08 3.7E-13 93.3 9.1 98 148-251 4-123 (328)
72 PRK15182 Vi polysaccharide bio 98.8 9.5E-09 2.1E-13 98.3 7.4 103 148-251 6-136 (425)
73 cd01080 NAD_bind_m-THF_DH_Cycl 98.8 2.4E-08 5.1E-13 83.8 8.6 82 144-241 40-122 (168)
74 PRK07417 arogenate dehydrogena 98.8 9.9E-09 2.2E-13 92.9 6.8 88 149-238 1-94 (279)
75 PRK11199 tyrA bifunctional cho 98.8 1.9E-08 4.2E-13 94.7 8.9 121 104-248 67-188 (374)
76 PRK14188 bifunctional 5,10-met 98.8 2.7E-08 5.9E-13 90.4 9.1 78 144-238 154-233 (296)
77 PRK12491 pyrroline-5-carboxyla 98.8 1.3E-08 2.9E-13 91.8 6.7 98 149-250 3-110 (272)
78 COG0499 SAM1 S-adenosylhomocys 98.8 2E-08 4.4E-13 91.8 7.7 106 145-255 206-318 (420)
79 PRK11064 wecC UDP-N-acetyl-D-m 98.8 3.2E-08 7E-13 94.5 9.3 104 149-252 4-136 (415)
80 cd01065 NAD_bind_Shikimate_DH 98.8 4.7E-08 1E-12 80.2 9.0 105 145-254 16-133 (155)
81 PRK07066 3-hydroxybutyryl-CoA 98.7 7.2E-08 1.6E-12 88.9 11.0 114 149-265 8-146 (321)
82 PRK07530 3-hydroxybutyryl-CoA 98.7 2.9E-08 6.2E-13 90.4 8.0 110 149-263 5-144 (292)
83 TIGR00518 alaDH alanine dehydr 98.7 1.9E-08 4.1E-13 94.6 6.5 97 145-241 164-275 (370)
84 PRK06545 prephenate dehydrogen 98.7 2.7E-08 5.8E-13 93.3 7.5 97 149-247 1-107 (359)
85 PRK07502 cyclohexadienyl dehyd 98.7 4.1E-08 8.8E-13 90.0 8.4 89 148-238 6-103 (307)
86 PRK07679 pyrroline-5-carboxyla 98.7 4.4E-08 9.5E-13 88.6 8.5 100 147-250 2-112 (279)
87 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 7.9E-08 1.7E-12 82.9 9.5 105 143-255 23-134 (200)
88 PF01210 NAD_Gly3P_dh_N: NAD-d 98.7 2E-08 4.2E-13 83.3 4.7 103 150-254 1-127 (157)
89 PRK14179 bifunctional 5,10-met 98.7 8.4E-08 1.8E-12 86.6 8.9 80 143-238 153-233 (284)
90 PRK00094 gpsA NAD(P)H-dependen 98.7 3.5E-08 7.5E-13 90.7 6.6 88 149-238 2-108 (325)
91 PRK07531 bifunctional 3-hydrox 98.7 3.8E-08 8.3E-13 96.0 6.8 102 149-252 5-131 (495)
92 PF10727 Rossmann-like: Rossma 98.7 1E-08 2.2E-13 82.0 2.3 103 147-253 9-120 (127)
93 PF01488 Shikimate_DH: Shikima 98.6 1.9E-08 4.1E-13 81.3 3.3 94 145-241 9-115 (135)
94 PRK08507 prephenate dehydrogen 98.6 6.7E-08 1.5E-12 87.2 7.0 95 149-251 1-103 (275)
95 PRK08268 3-hydroxy-acyl-CoA de 98.6 8.1E-08 1.7E-12 93.9 7.8 113 149-266 8-150 (507)
96 COG0362 Gnd 6-phosphogluconate 98.6 1.5E-07 3.3E-12 87.1 9.0 122 149-271 4-138 (473)
97 PRK14189 bifunctional 5,10-met 98.6 1.3E-07 2.9E-12 85.3 8.6 80 143-238 153-233 (285)
98 PRK06035 3-hydroxyacyl-CoA deh 98.6 1.7E-07 3.7E-12 85.3 9.1 113 149-265 4-148 (291)
99 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 1.2E-07 2.5E-12 92.7 8.3 113 149-266 6-148 (503)
100 KOG1370 S-adenosylhomocysteine 98.6 7E-08 1.5E-12 86.5 6.1 90 145-239 211-305 (434)
101 PRK07680 late competence prote 98.6 1.1E-07 2.4E-12 85.7 7.7 98 149-250 1-109 (273)
102 PRK13302 putative L-aspartate 98.6 1.2E-07 2.7E-12 85.5 7.9 103 148-255 6-118 (271)
103 PRK08293 3-hydroxybutyryl-CoA 98.6 1.5E-07 3.2E-12 85.6 8.4 112 149-263 4-145 (287)
104 PRK06130 3-hydroxybutyryl-CoA 98.6 1.2E-07 2.7E-12 86.9 7.7 100 149-250 5-128 (311)
105 PRK06129 3-hydroxyacyl-CoA deh 98.6 1.4E-07 3.1E-12 86.5 7.4 103 149-253 3-134 (308)
106 PRK07819 3-hydroxybutyryl-CoA 98.6 1E-07 2.2E-12 86.7 6.0 113 149-265 6-148 (286)
107 PRK06476 pyrroline-5-carboxyla 98.5 1.8E-07 3.8E-12 83.7 6.9 98 149-252 1-108 (258)
108 PRK05808 3-hydroxybutyryl-CoA 98.5 4.4E-07 9.6E-12 82.2 9.3 111 149-263 4-143 (282)
109 PRK05472 redox-sensing transcr 98.5 1.3E-07 2.8E-12 82.3 5.3 130 102-251 58-201 (213)
110 PRK14175 bifunctional 5,10-met 98.5 4.6E-07 1E-11 81.9 8.6 79 144-238 154-233 (286)
111 PRK15057 UDP-glucose 6-dehydro 98.5 3.9E-07 8.5E-12 86.3 8.5 103 149-254 1-136 (388)
112 COG2085 Predicted dinucleotide 98.5 4.2E-07 9.1E-12 78.1 7.5 86 149-237 2-95 (211)
113 PRK06928 pyrroline-5-carboxyla 98.5 8.2E-07 1.8E-11 80.4 9.7 99 149-251 2-112 (277)
114 cd05191 NAD_bind_amino_acid_DH 98.4 1.2E-06 2.7E-11 65.1 8.3 67 144-235 19-86 (86)
115 TIGR00561 pntA NAD(P) transhyd 98.4 3.1E-06 6.7E-11 82.3 12.6 181 48-235 64-284 (511)
116 TIGR01915 npdG NADPH-dependent 98.4 4.8E-07 1E-11 79.0 6.2 89 149-240 1-106 (219)
117 PRK14806 bifunctional cyclohex 98.4 1.1E-06 2.4E-11 89.8 9.2 101 149-251 4-113 (735)
118 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 3.1E-07 6.7E-12 78.3 4.3 103 149-251 1-137 (185)
119 COG0059 IlvC Ketol-acid reduct 98.4 8.3E-07 1.8E-11 79.8 6.9 85 145-231 15-105 (338)
120 KOG2380 Prephenate dehydrogena 98.4 4.9E-07 1.1E-11 82.3 5.5 116 148-270 52-172 (480)
121 PRK12557 H(2)-dependent methyl 98.4 1.4E-06 3.1E-11 81.0 8.8 90 160-250 32-132 (342)
122 cd01079 NAD_bind_m-THF_DH NAD 98.4 2.8E-06 6E-11 72.4 9.5 90 141-237 55-158 (197)
123 PRK11880 pyrroline-5-carboxyla 98.3 1.1E-06 2.3E-11 78.9 6.8 96 149-250 3-107 (267)
124 KOG2653 6-phosphogluconate deh 98.3 2.5E-06 5.5E-11 78.1 9.0 122 149-271 7-141 (487)
125 PTZ00431 pyrroline carboxylate 98.3 2.6E-06 5.7E-11 76.3 8.8 97 148-250 3-103 (260)
126 PF02882 THF_DHG_CYH_C: Tetrah 98.3 3.6E-06 7.7E-11 70.0 8.2 81 143-239 31-112 (160)
127 TIGR01035 hemA glutamyl-tRNA r 98.3 8.9E-07 1.9E-11 84.7 5.0 95 145-242 177-284 (417)
128 COG0240 GpsA Glycerol-3-phosph 98.3 1.5E-06 3.2E-11 79.6 6.2 88 149-238 2-108 (329)
129 PRK10792 bifunctional 5,10-met 98.3 3.7E-06 7.9E-11 76.0 8.4 77 143-235 154-231 (285)
130 PRK07634 pyrroline-5-carboxyla 98.3 4.1E-06 8.9E-11 74.0 8.5 101 147-252 3-114 (245)
131 COG0686 Ald Alanine dehydrogen 98.3 1.2E-06 2.6E-11 79.0 5.1 98 145-243 165-278 (371)
132 PRK13304 L-aspartate dehydroge 98.2 2.4E-06 5.2E-11 76.9 7.1 102 149-255 2-115 (265)
133 cd05311 NAD_bind_2_malic_enz N 98.2 9E-06 1.9E-10 71.5 10.2 102 144-252 21-143 (226)
134 cd05213 NAD_bind_Glutamyl_tRNA 98.2 1.9E-06 4.1E-11 79.3 6.1 94 146-241 176-279 (311)
135 PRK14192 bifunctional 5,10-met 98.2 5.9E-06 1.3E-10 75.0 9.2 79 143-237 154-233 (283)
136 PRK14191 bifunctional 5,10-met 98.2 4.4E-06 9.6E-11 75.5 8.2 80 143-238 152-232 (285)
137 PRK14178 bifunctional 5,10-met 98.2 3.7E-06 8E-11 75.8 7.6 79 143-237 147-226 (279)
138 PRK14176 bifunctional 5,10-met 98.2 5.2E-06 1.1E-10 75.0 8.6 78 143-236 159-237 (287)
139 COG0345 ProC Pyrroline-5-carbo 98.2 4.9E-06 1.1E-10 74.6 8.2 94 149-250 2-108 (266)
140 PLN00203 glutamyl-tRNA reducta 98.2 1.7E-06 3.6E-11 84.7 5.5 94 145-241 263-375 (519)
141 PF02737 3HCDH_N: 3-hydroxyacy 98.2 1.6E-06 3.5E-11 73.6 4.6 110 150-263 1-139 (180)
142 PRK08229 2-dehydropantoate 2-r 98.2 3.5E-06 7.6E-11 78.2 7.3 102 149-254 3-125 (341)
143 cd05212 NAD_bind_m-THF_DH_Cycl 98.2 1.9E-05 4.2E-10 64.2 10.5 80 143-238 23-103 (140)
144 PRK06522 2-dehydropantoate 2-r 98.2 9.4E-06 2E-10 73.8 9.5 103 149-255 1-119 (304)
145 PF01262 AlaDh_PNT_C: Alanine 98.2 1.2E-06 2.6E-11 73.4 3.1 92 144-235 16-139 (168)
146 TIGR03376 glycerol3P_DH glycer 98.2 8E-06 1.7E-10 76.1 8.7 87 150-238 1-119 (342)
147 COG0373 HemA Glutamyl-tRNA red 98.1 3E-06 6.5E-11 80.2 5.6 95 145-242 175-281 (414)
148 PRK00045 hemA glutamyl-tRNA re 98.1 3.2E-06 7E-11 81.0 5.7 95 145-242 179-287 (423)
149 PRK12921 2-dehydropantoate 2-r 98.1 9.6E-06 2.1E-10 73.9 8.5 103 149-255 1-121 (305)
150 PRK09424 pntA NAD(P) transhydr 98.1 2.4E-05 5.1E-10 76.4 11.5 178 48-236 65-286 (509)
151 PRK00676 hemA glutamyl-tRNA re 98.1 1.1E-05 2.4E-10 74.7 8.3 93 145-242 171-268 (338)
152 PRK14183 bifunctional 5,10-met 98.1 1.5E-05 3.3E-10 71.8 8.7 78 143-236 152-230 (281)
153 PRK14170 bifunctional 5,10-met 98.1 3E-05 6.5E-10 70.1 10.3 80 143-238 152-232 (284)
154 PTZ00345 glycerol-3-phosphate 98.1 1.4E-05 3.1E-10 74.9 8.5 89 148-238 11-132 (365)
155 PRK06141 ornithine cyclodeamin 98.1 1.1E-05 2.5E-10 74.2 7.4 82 147-235 124-218 (314)
156 PRK14177 bifunctional 5,10-met 98.0 2.3E-05 5E-10 70.8 8.9 78 143-236 154-232 (284)
157 PRK14190 bifunctional 5,10-met 98.0 3.1E-05 6.6E-10 70.1 9.5 81 143-239 153-234 (284)
158 PRK14169 bifunctional 5,10-met 98.0 2.7E-05 5.8E-10 70.3 9.0 80 143-238 151-231 (282)
159 PRK14166 bifunctional 5,10-met 98.0 2.5E-05 5.5E-10 70.5 8.7 78 143-236 152-230 (282)
160 PRK14186 bifunctional 5,10-met 98.0 3.1E-05 6.7E-10 70.5 9.1 81 143-239 153-234 (297)
161 PRK00258 aroE shikimate 5-dehy 98.0 5.7E-06 1.2E-10 74.9 4.4 107 145-253 120-237 (278)
162 PRK13940 glutamyl-tRNA reducta 98.0 9E-06 2E-10 77.6 5.7 92 145-241 178-279 (414)
163 PRK14187 bifunctional 5,10-met 98.0 3.1E-05 6.8E-10 70.3 8.8 80 143-238 155-235 (294)
164 PRK14180 bifunctional 5,10-met 98.0 3E-05 6.6E-10 70.0 8.7 78 143-236 153-231 (282)
165 TIGR00507 aroE shikimate 5-deh 98.0 2.4E-05 5.1E-10 70.5 8.1 105 146-255 115-232 (270)
166 PLN02516 methylenetetrahydrofo 98.0 3.1E-05 6.8E-10 70.4 8.7 80 143-238 162-242 (299)
167 PRK14172 bifunctional 5,10-met 98.0 3.6E-05 7.8E-10 69.4 9.0 80 143-238 153-233 (278)
168 PRK14171 bifunctional 5,10-met 98.0 3.7E-05 8E-10 69.6 8.8 76 144-235 155-231 (288)
169 PRK14182 bifunctional 5,10-met 98.0 4.1E-05 8.9E-10 69.1 8.9 79 144-238 153-232 (282)
170 cd01078 NAD_bind_H4MPT_DH NADP 98.0 1.7E-05 3.7E-10 67.8 6.2 96 143-242 23-136 (194)
171 PLN02616 tetrahydrofolate dehy 97.9 3.5E-05 7.6E-10 71.5 8.5 80 143-238 226-306 (364)
172 TIGR02371 ala_DH_arch alanine 97.9 1.9E-05 4.2E-10 73.1 6.9 84 148-237 128-224 (325)
173 PLN02897 tetrahydrofolate dehy 97.9 3.8E-05 8.3E-10 70.9 8.4 80 143-238 209-289 (345)
174 PRK14620 NAD(P)H-dependent gly 97.9 3.3E-05 7.2E-10 71.3 8.1 88 149-238 1-109 (326)
175 PRK14173 bifunctional 5,10-met 97.9 5.1E-05 1.1E-09 68.7 8.9 81 143-239 150-231 (287)
176 PLN02353 probable UDP-glucose 97.9 2.9E-05 6.3E-10 75.3 7.8 103 149-251 2-143 (473)
177 PRK14181 bifunctional 5,10-met 97.9 5.8E-05 1.3E-09 68.3 9.1 80 143-238 148-232 (287)
178 PRK12439 NAD(P)H-dependent gly 97.9 4.2E-05 9.1E-10 71.3 8.4 87 149-238 8-114 (341)
179 PRK14982 acyl-ACP reductase; P 97.9 2.9E-05 6.3E-10 72.1 6.8 95 142-242 149-253 (340)
180 PRK14184 bifunctional 5,10-met 97.9 6.2E-05 1.3E-09 68.1 8.4 77 143-235 152-233 (286)
181 PF13380 CoA_binding_2: CoA bi 97.8 9.5E-05 2.1E-09 58.2 8.3 103 149-258 1-107 (116)
182 COG0190 FolD 5,10-methylene-te 97.8 5.8E-05 1.3E-09 67.7 7.8 81 143-239 151-232 (283)
183 PRK14185 bifunctional 5,10-met 97.8 9.4E-05 2E-09 67.1 9.1 79 143-237 152-235 (293)
184 PRK14193 bifunctional 5,10-met 97.8 0.00011 2.3E-09 66.6 9.2 80 143-238 153-235 (284)
185 PRK14174 bifunctional 5,10-met 97.8 8.5E-05 1.8E-09 67.6 8.4 79 144-238 155-238 (295)
186 PRK06249 2-dehydropantoate 2-r 97.8 7.6E-05 1.7E-09 68.6 8.2 106 148-257 5-127 (313)
187 PRK07340 ornithine cyclodeamin 97.8 3.7E-05 8.1E-10 70.5 6.0 84 147-237 124-219 (304)
188 COG0677 WecC UDP-N-acetyl-D-ma 97.8 6E-05 1.3E-09 70.4 7.2 102 149-252 10-145 (436)
189 PRK14168 bifunctional 5,10-met 97.8 0.0001 2.3E-09 67.0 8.7 80 143-238 156-240 (297)
190 TIGR02354 thiF_fam2 thiamine b 97.8 0.00011 2.4E-09 63.3 8.4 96 144-240 17-150 (200)
191 PRK14167 bifunctional 5,10-met 97.8 0.00014 3.1E-09 66.1 9.2 80 143-238 152-236 (297)
192 TIGR02992 ectoine_eutC ectoine 97.7 7.4E-05 1.6E-09 69.2 7.2 83 148-236 129-225 (326)
193 PF13241 NAD_binding_7: Putati 97.7 3.1E-05 6.6E-10 59.6 3.0 86 145-235 4-91 (103)
194 COG1250 FadB 3-hydroxyacyl-CoA 97.7 0.0002 4.4E-09 65.5 8.7 115 148-266 3-146 (307)
195 PRK08618 ornithine cyclodeamin 97.7 9.9E-05 2.1E-09 68.4 6.6 83 147-236 126-222 (325)
196 PRK06823 ornithine cyclodeamin 97.6 0.00012 2.6E-09 67.6 6.6 82 148-235 128-222 (315)
197 PRK11730 fadB multifunctional 97.6 0.00017 3.7E-09 73.5 8.3 113 149-265 314-455 (715)
198 PTZ00117 malate dehydrogenase; 97.6 0.00033 7.1E-09 64.7 9.2 113 146-260 3-151 (319)
199 PRK09310 aroDE bifunctional 3- 97.6 0.0002 4.3E-09 69.8 8.0 101 143-255 327-434 (477)
200 PF02423 OCD_Mu_crystall: Orni 97.6 6.9E-05 1.5E-09 69.1 4.6 87 149-239 129-228 (313)
201 TIGR01763 MalateDH_bact malate 97.6 0.00018 3.9E-09 66.1 7.3 111 149-260 2-147 (305)
202 COG1748 LYS9 Saccharopine dehy 97.6 0.00016 3.6E-09 68.1 6.9 100 149-255 2-118 (389)
203 PRK12549 shikimate 5-dehydroge 97.6 0.00018 3.8E-09 65.5 6.6 104 146-254 125-244 (284)
204 PRK06444 prephenate dehydrogen 97.6 0.00014 3.1E-09 62.5 5.6 81 149-271 1-82 (197)
205 PRK06407 ornithine cyclodeamin 97.5 0.00019 4.1E-09 65.8 6.6 83 148-236 117-213 (301)
206 PRK06046 alanine dehydrogenase 97.5 0.00019 4.1E-09 66.5 6.7 82 148-236 129-224 (326)
207 COG2423 Predicted ornithine cy 97.5 0.00035 7.6E-09 64.6 8.3 82 149-236 131-226 (330)
208 TIGR02441 fa_ox_alpha_mit fatt 97.5 0.00025 5.5E-09 72.5 7.8 113 149-265 336-477 (737)
209 PRK11154 fadJ multifunctional 97.5 0.00031 6.7E-09 71.6 8.3 113 149-265 310-452 (708)
210 PRK06199 ornithine cyclodeamin 97.5 0.00021 4.5E-09 67.6 6.5 87 148-237 155-261 (379)
211 cd00650 LDH_MDH_like NAD-depen 97.5 0.0002 4.3E-09 64.3 5.7 112 151-263 1-150 (263)
212 smart00859 Semialdhyde_dh Semi 97.5 0.00042 9E-09 54.6 6.9 85 150-236 1-100 (122)
213 TIGR02437 FadB fatty oxidation 97.5 0.00046 9.9E-09 70.4 8.8 113 149-265 314-455 (714)
214 PRK08291 ectoine utilization p 97.5 0.00027 6E-09 65.5 6.7 82 148-235 132-227 (330)
215 TIGR01546 GAPDH-II_archae glyc 97.5 0.0004 8.7E-09 64.3 7.7 82 151-235 1-108 (333)
216 TIGR02440 FadJ fatty oxidation 97.5 0.00048 1.1E-08 70.1 8.9 113 149-265 305-447 (699)
217 COG1712 Predicted dinucleotide 97.4 0.00037 8.1E-09 60.5 6.5 91 149-244 1-100 (255)
218 cd05313 NAD_bind_2_Glu_DH NAD( 97.4 0.0021 4.5E-08 57.4 11.1 105 144-255 34-172 (254)
219 PF01113 DapB_N: Dihydrodipico 97.4 0.0012 2.7E-08 52.3 8.6 99 149-252 1-115 (124)
220 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0019 4.2E-08 56.4 10.5 104 144-255 19-145 (217)
221 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.0047 1E-07 54.3 13.0 104 144-255 27-154 (227)
222 COG1004 Ugd Predicted UDP-gluc 97.4 0.00076 1.6E-08 63.2 8.2 105 149-253 1-138 (414)
223 PF02153 PDH: Prephenate dehyd 97.4 0.00034 7.4E-09 62.6 5.8 86 163-250 1-94 (258)
224 TIGR01921 DAP-DH diaminopimela 97.4 0.0017 3.7E-08 59.9 10.4 103 149-256 4-116 (324)
225 PRK07589 ornithine cyclodeamin 97.3 0.00039 8.5E-09 64.9 6.1 85 148-236 129-226 (346)
226 PRK06718 precorrin-2 dehydroge 97.3 0.00044 9.6E-09 59.7 5.8 70 141-210 3-81 (202)
227 TIGR01470 cysG_Nterm siroheme 97.3 0.00031 6.7E-09 60.8 4.8 68 141-209 2-79 (205)
228 TIGR01809 Shik-DH-AROM shikima 97.3 0.00053 1.2E-08 62.3 6.4 100 146-251 123-245 (282)
229 PLN02477 glutamate dehydrogena 97.3 0.0019 4.1E-08 61.6 10.3 105 143-255 201-329 (410)
230 PRK13301 putative L-aspartate 97.3 0.0014 3.1E-08 58.6 8.8 100 149-253 3-114 (267)
231 PRK06223 malate dehydrogenase; 97.3 0.00098 2.1E-08 61.0 8.0 108 149-258 3-144 (307)
232 PRK13303 L-aspartate dehydroge 97.3 0.0014 3.1E-08 58.9 8.7 102 149-255 2-115 (265)
233 PTZ00082 L-lactate dehydrogena 97.2 0.0011 2.4E-08 61.3 8.0 111 146-258 4-153 (321)
234 PF01118 Semialdhyde_dh: Semia 97.2 0.00065 1.4E-08 53.6 5.5 83 150-237 1-99 (121)
235 PRK08306 dipicolinate synthase 97.2 0.0031 6.8E-08 57.7 10.6 111 147-264 1-123 (296)
236 PF01408 GFO_IDH_MocA: Oxidore 97.1 0.00038 8.3E-09 54.2 3.3 102 149-255 1-115 (120)
237 COG1064 AdhP Zn-dependent alco 97.1 0.0011 2.4E-08 61.4 6.5 84 147-236 166-260 (339)
238 PRK12548 shikimate 5-dehydroge 97.1 0.0014 3.1E-08 59.6 7.1 105 145-252 123-252 (289)
239 PF02558 ApbA: Ketopantoate re 97.1 0.00048 1E-08 56.1 3.4 105 151-259 1-124 (151)
240 PRK00048 dihydrodipicolinate r 97.1 0.0051 1.1E-07 55.1 10.3 60 149-208 2-69 (257)
241 cd05297 GH4_alpha_glucosidase_ 97.1 0.00065 1.4E-08 65.2 4.6 102 149-250 1-160 (423)
242 TIGR02356 adenyl_thiF thiazole 97.0 0.0016 3.5E-08 56.1 6.5 80 144-224 17-135 (202)
243 COG0771 MurD UDP-N-acetylmuram 97.0 0.0045 9.7E-08 59.6 9.7 138 146-284 5-182 (448)
244 PRK05708 2-dehydropantoate 2-r 97.0 0.0025 5.4E-08 58.5 7.7 107 149-258 3-126 (305)
245 PRK09414 glutamate dehydrogena 97.0 0.008 1.7E-07 57.9 11.4 106 143-255 227-362 (445)
246 cd05291 HicDH_like L-2-hydroxy 97.0 0.0022 4.8E-08 58.8 7.4 88 149-236 1-118 (306)
247 KOG2304 3-hydroxyacyl-CoA dehy 97.0 0.0002 4.3E-09 62.2 0.3 118 145-266 8-160 (298)
248 PRK00066 ldh L-lactate dehydro 97.0 0.0024 5.2E-08 58.9 7.5 62 147-208 5-82 (315)
249 PF00185 OTCace: Aspartate/orn 97.0 0.0055 1.2E-07 50.8 8.9 95 147-241 1-129 (158)
250 TIGR02717 AcCoA-syn-alpha acet 97.0 0.007 1.5E-07 58.5 10.9 110 146-258 5-126 (447)
251 PRK12749 quinate/shikimate deh 97.0 0.0049 1.1E-07 56.2 9.1 106 145-254 121-250 (288)
252 cd01339 LDH-like_MDH L-lactate 96.9 0.002 4.2E-08 59.0 6.3 106 151-258 1-140 (300)
253 COG5322 Predicted dehydrogenas 96.9 0.0036 7.8E-08 55.8 7.6 97 142-243 161-269 (351)
254 PRK06719 precorrin-2 dehydroge 96.9 0.0015 3.2E-08 54.2 4.6 70 140-209 5-80 (157)
255 COG0569 TrkA K+ transport syst 96.8 0.0011 2.4E-08 58.2 3.9 63 149-211 1-78 (225)
256 PRK14031 glutamate dehydrogena 96.8 0.0069 1.5E-07 58.2 9.5 106 143-255 223-361 (444)
257 cd05293 LDH_1 A subgroup of L- 96.8 0.0044 9.4E-08 57.1 7.9 109 148-257 3-144 (312)
258 TIGR01850 argC N-acetyl-gamma- 96.8 0.0045 9.8E-08 57.9 8.0 93 149-247 1-111 (346)
259 cd00762 NAD_bind_malic_enz NAD 96.8 0.014 3E-07 52.1 10.6 132 107-262 4-171 (254)
260 COG0026 PurK Phosphoribosylami 96.8 0.0025 5.5E-08 59.2 6.1 58 148-205 1-68 (375)
261 PRK00856 pyrB aspartate carbam 96.8 0.011 2.3E-07 54.4 10.2 97 146-242 154-272 (305)
262 COG4007 Predicted dehydrogenas 96.8 0.0049 1.1E-07 54.7 7.2 81 160-241 33-123 (340)
263 PRK01710 murD UDP-N-acetylmura 96.8 0.0086 1.9E-07 58.0 9.7 108 146-254 12-144 (458)
264 cd00757 ThiF_MoeB_HesA_family 96.8 0.0031 6.8E-08 55.4 6.1 88 144-235 17-143 (228)
265 COG0169 AroE Shikimate 5-dehyd 96.8 0.005 1.1E-07 55.9 7.4 105 144-252 122-242 (283)
266 cd05312 NAD_bind_1_malic_enz N 96.7 0.026 5.7E-07 51.0 11.9 129 107-259 4-167 (279)
267 PRK05690 molybdopterin biosynt 96.7 0.0023 5.1E-08 56.9 5.3 37 144-180 28-65 (245)
268 TIGR02964 xanthine_xdhC xanthi 96.7 0.012 2.7E-07 52.3 9.8 91 149-257 101-191 (246)
269 PLN02968 Probable N-acetyl-gam 96.7 0.0031 6.8E-08 59.7 6.3 97 146-248 36-147 (381)
270 KOG0023 Alcohol dehydrogenase, 96.7 0.0024 5.2E-08 58.3 5.1 106 147-255 181-323 (360)
271 PRK00683 murD UDP-N-acetylmura 96.7 0.003 6.6E-08 60.4 6.2 106 148-253 3-128 (418)
272 PRK12475 thiamine/molybdopteri 96.7 0.0041 9E-08 57.9 6.9 38 144-181 20-58 (338)
273 PRK01713 ornithine carbamoyltr 96.7 0.04 8.6E-07 51.3 13.1 126 88-235 118-275 (334)
274 PRK14030 glutamate dehydrogena 96.7 0.02 4.4E-07 55.0 11.4 106 143-255 223-362 (445)
275 KOG2711 Glycerol-3-phosphate d 96.7 0.0076 1.6E-07 55.5 8.0 90 146-237 19-141 (372)
276 PF00208 ELFV_dehydrog: Glutam 96.7 0.0089 1.9E-07 53.2 8.3 104 145-255 29-165 (244)
277 PRK08269 3-hydroxybutyryl-CoA 96.6 0.0082 1.8E-07 55.4 8.1 104 159-265 1-142 (314)
278 TIGR02355 moeB molybdopterin s 96.6 0.0061 1.3E-07 54.0 6.7 38 144-181 20-58 (240)
279 COG0334 GdhA Glutamate dehydro 96.6 0.0079 1.7E-07 56.8 7.6 91 143-240 202-317 (411)
280 PTZ00079 NADP-specific glutama 96.5 0.021 4.5E-07 55.0 10.4 106 143-255 232-371 (454)
281 PRK00436 argC N-acetyl-gamma-g 96.5 0.0065 1.4E-07 56.7 6.9 89 149-242 3-106 (343)
282 TIGR00036 dapB dihydrodipicoli 96.5 0.017 3.6E-07 52.0 9.1 60 149-208 2-77 (266)
283 PRK04207 glyceraldehyde-3-phos 96.5 0.01 2.3E-07 55.3 7.9 62 149-210 2-89 (341)
284 PF03720 UDPG_MGDP_dh_C: UDP-g 96.5 0.0043 9.2E-08 47.9 4.4 75 159-234 18-100 (106)
285 TIGR00670 asp_carb_tr aspartat 96.5 0.024 5.1E-07 52.0 9.9 96 146-241 148-270 (301)
286 PF13460 NAD_binding_10: NADH( 96.5 0.0028 6.1E-08 52.9 3.6 62 151-212 1-73 (183)
287 PLN02520 bifunctional 3-dehydr 96.4 0.0059 1.3E-07 60.3 6.3 104 145-252 376-491 (529)
288 COG1648 CysG Siroheme synthase 96.4 0.0038 8.3E-08 54.2 4.3 70 141-211 5-84 (210)
289 PLN02527 aspartate carbamoyltr 96.4 0.029 6.4E-07 51.5 10.3 93 146-238 149-270 (306)
290 cd05292 LDH_2 A subgroup of L- 96.4 0.0048 1.1E-07 56.7 5.2 60 149-209 1-77 (308)
291 PRK09496 trkA potassium transp 96.4 0.0064 1.4E-07 58.4 6.2 64 149-212 1-78 (453)
292 PLN02353 probable UDP-glucose 96.4 0.032 7E-07 54.3 11.0 98 145-245 321-455 (473)
293 PRK00779 ornithine carbamoyltr 96.4 0.12 2.7E-06 47.4 14.2 124 89-235 116-265 (304)
294 PRK11579 putative oxidoreducta 96.4 0.02 4.3E-07 53.3 9.2 62 149-210 5-75 (346)
295 TIGR03026 NDP-sugDHase nucleot 96.4 0.019 4.1E-07 54.9 9.3 87 146-234 311-409 (411)
296 PRK05086 malate dehydrogenase; 96.4 0.019 4.2E-07 52.9 8.9 90 149-238 1-121 (312)
297 PRK02255 putrescine carbamoylt 96.3 0.036 7.9E-07 51.6 10.5 91 145-235 151-272 (338)
298 COG1893 ApbA Ketopantoate redu 96.3 0.013 2.8E-07 53.9 7.5 103 149-254 1-119 (307)
299 TIGR02853 spore_dpaA dipicolin 96.3 0.045 9.9E-07 49.8 10.9 111 148-265 1-123 (287)
300 PRK14027 quinate/shikimate deh 96.3 0.0067 1.5E-07 55.1 5.3 103 146-252 125-245 (283)
301 PRK07232 bifunctional malic en 96.3 0.071 1.5E-06 54.6 13.0 119 93-239 153-288 (752)
302 PF00056 Ldh_1_N: lactate/mala 96.3 0.0018 4E-08 52.6 1.4 60 149-208 1-78 (141)
303 PF13478 XdhC_C: XdhC Rossmann 96.2 0.0079 1.7E-07 48.6 4.9 86 151-259 1-86 (136)
304 PF03435 Saccharop_dh: Sacchar 96.2 0.0042 9.2E-08 58.6 3.8 60 151-210 1-78 (386)
305 PRK08644 thiamine biosynthesis 96.2 0.018 3.9E-07 50.1 7.3 37 144-180 24-61 (212)
306 cd00300 LDH_like L-lactate deh 96.2 0.013 2.7E-07 53.8 6.4 106 151-257 1-139 (300)
307 PF02254 TrkA_N: TrkA-N domain 96.1 0.0042 9.1E-08 48.1 2.8 80 151-232 1-93 (116)
308 PRK08223 hypothetical protein; 96.1 0.018 3.9E-07 52.3 7.2 37 144-180 23-60 (287)
309 PRK08328 hypothetical protein; 96.1 0.015 3.3E-07 51.2 6.6 38 144-181 23-61 (231)
310 TIGR00658 orni_carb_tr ornithi 96.1 0.19 4.1E-06 46.2 13.9 125 88-235 111-264 (304)
311 PRK14106 murD UDP-N-acetylmura 96.1 0.035 7.6E-07 53.4 9.6 108 145-252 2-133 (450)
312 PLN02602 lactate dehydrogenase 96.1 0.025 5.4E-07 53.0 8.3 88 149-237 38-156 (350)
313 PF03949 Malic_M: Malic enzyme 96.1 0.025 5.4E-07 50.5 7.8 122 107-252 4-158 (255)
314 PRK03515 ornithine carbamoyltr 96.1 0.072 1.6E-06 49.6 11.1 91 145-235 153-275 (336)
315 PRK06019 phosphoribosylaminoim 96.1 0.013 2.9E-07 55.2 6.3 58 148-205 2-69 (372)
316 PRK05597 molybdopterin biosynt 96.1 0.0084 1.8E-07 56.3 4.9 37 144-180 24-61 (355)
317 COG3288 PntA NAD/NADP transhyd 96.1 0.0041 8.9E-08 56.5 2.7 92 143-235 159-281 (356)
318 PRK12862 malic enzyme; Reviewe 96.0 0.087 1.9E-06 54.2 12.4 119 93-239 161-296 (763)
319 PRK05600 thiamine biosynthesis 96.0 0.0083 1.8E-07 56.6 4.7 80 143-223 36-154 (370)
320 TIGR03316 ygeW probable carbam 96.0 0.15 3.3E-06 47.8 13.1 91 145-235 167-313 (357)
321 PRK10637 cysG siroheme synthas 96.0 0.0092 2E-07 57.9 5.1 71 140-210 4-83 (457)
322 PRK07688 thiamine/molybdopteri 96.0 0.018 3.8E-07 53.8 6.5 37 144-180 20-57 (339)
323 PRK06270 homoserine dehydrogen 96.0 0.041 8.9E-07 51.3 9.0 107 149-255 3-146 (341)
324 cd00755 YgdL_like Family of ac 95.9 0.073 1.6E-06 47.0 9.8 121 145-268 8-185 (231)
325 PLN02819 lysine-ketoglutarate 95.9 0.018 3.8E-07 60.9 6.8 64 147-210 568-659 (1042)
326 PRK07411 hypothetical protein; 95.9 0.019 4.1E-07 54.6 6.4 37 144-180 34-71 (390)
327 PRK06153 hypothetical protein; 95.9 0.021 4.6E-07 53.8 6.6 35 145-179 173-208 (393)
328 PRK02472 murD UDP-N-acetylmura 95.8 0.078 1.7E-06 51.0 10.6 108 146-253 3-134 (447)
329 cd01487 E1_ThiF_like E1_ThiF_l 95.8 0.036 7.8E-07 46.6 7.3 32 150-181 1-33 (174)
330 PRK03659 glutathione-regulated 95.8 0.0094 2E-07 59.8 4.3 84 148-233 400-496 (601)
331 cd01492 Aos1_SUMO Ubiquitin ac 95.8 0.019 4.1E-07 49.4 5.6 37 144-180 17-54 (197)
332 PRK15076 alpha-galactosidase; 95.8 0.012 2.6E-07 56.7 4.7 109 149-258 2-169 (431)
333 PRK11891 aspartate carbamoyltr 95.8 0.055 1.2E-06 51.9 9.1 91 145-235 238-355 (429)
334 PRK11863 N-acetyl-gamma-glutam 95.7 0.043 9.4E-07 50.6 8.0 77 149-235 3-81 (313)
335 PRK10669 putative cation:proto 95.7 0.01 2.2E-07 58.9 4.2 82 149-232 418-512 (558)
336 PRK12861 malic enzyme; Reviewe 95.7 0.1 2.3E-06 53.4 11.4 141 71-239 125-292 (764)
337 cd01338 MDH_choloroplast_like 95.7 0.092 2E-06 48.6 10.2 97 149-247 3-138 (322)
338 PRK13814 pyrB aspartate carbam 95.7 0.068 1.5E-06 49.2 9.1 90 146-235 155-264 (310)
339 PRK08762 molybdopterin biosynt 95.7 0.016 3.5E-07 54.7 5.2 37 144-180 131-168 (376)
340 PRK07878 molybdopterin biosynt 95.7 0.027 5.8E-07 53.6 6.6 37 144-180 38-75 (392)
341 PRK02102 ornithine carbamoyltr 95.7 0.044 9.6E-07 50.9 7.8 90 146-235 153-273 (331)
342 PF02629 CoA_binding: CoA bind 95.7 0.034 7.4E-07 41.9 5.9 69 148-217 3-79 (96)
343 TIGR01761 thiaz-red thiazoliny 95.6 0.055 1.2E-06 50.6 8.3 104 149-257 4-119 (343)
344 PLN02342 ornithine carbamoyltr 95.6 0.12 2.7E-06 48.3 10.6 90 146-235 192-307 (348)
345 PRK05786 fabG 3-ketoacyl-(acyl 95.6 0.05 1.1E-06 47.0 7.7 38 145-182 2-40 (238)
346 PRK05562 precorrin-2 dehydroge 95.6 0.017 3.7E-07 50.6 4.5 69 140-209 17-95 (223)
347 PRK03369 murD UDP-N-acetylmura 95.6 0.016 3.5E-07 56.7 4.9 107 146-253 10-143 (488)
348 COG2910 Putative NADH-flavin r 95.6 0.057 1.2E-06 45.8 7.4 62 149-210 1-73 (211)
349 cd01483 E1_enzyme_family Super 95.5 0.16 3.4E-06 40.9 9.8 32 150-181 1-33 (143)
350 PRK09496 trkA potassium transp 95.5 0.027 5.8E-07 54.1 6.0 87 146-234 229-330 (453)
351 PRK12550 shikimate 5-dehydroge 95.5 0.037 8.1E-07 50.0 6.5 101 148-252 122-232 (272)
352 PRK08300 acetaldehyde dehydrog 95.5 0.051 1.1E-06 49.8 7.4 83 148-235 4-101 (302)
353 PRK05678 succinyl-CoA syntheta 95.5 0.17 3.6E-06 46.3 10.7 109 148-260 8-123 (291)
354 PF04016 DUF364: Domain of unk 95.5 0.042 9.2E-07 45.0 6.2 86 146-237 9-97 (147)
355 PRK01390 murD UDP-N-acetylmura 95.5 0.089 1.9E-06 50.9 9.4 109 145-253 6-140 (460)
356 CHL00194 ycf39 Ycf39; Provisio 95.5 0.023 5.1E-07 52.0 5.2 60 149-208 1-73 (317)
357 PRK02006 murD UDP-N-acetylmura 95.4 0.033 7.1E-07 54.5 6.5 110 146-255 5-149 (498)
358 cd05294 LDH-like_MDH_nadp A la 95.4 0.11 2.3E-06 47.9 9.4 59 149-208 1-81 (309)
359 PRK07877 hypothetical protein; 95.4 0.045 9.8E-07 55.9 7.5 79 144-224 103-220 (722)
360 cd01486 Apg7 Apg7 is an E1-lik 95.4 0.055 1.2E-06 49.5 7.3 29 150-178 1-30 (307)
361 PLN02383 aspartate semialdehyd 95.4 0.047 1E-06 51.1 6.9 84 147-235 6-100 (344)
362 PF05222 AlaDh_PNT_N: Alanine 95.4 0.13 2.9E-06 41.5 8.7 93 162-264 18-119 (136)
363 PRK03562 glutathione-regulated 95.4 0.018 3.9E-07 58.0 4.4 83 148-232 400-495 (621)
364 PRK14804 ornithine carbamoyltr 95.3 0.38 8.3E-06 44.3 12.8 61 145-205 150-224 (311)
365 PRK14874 aspartate-semialdehyd 95.3 0.049 1.1E-06 50.7 6.9 84 148-236 1-95 (334)
366 PRK04284 ornithine carbamoyltr 95.3 0.11 2.3E-06 48.4 9.0 126 88-235 117-274 (332)
367 PRK06349 homoserine dehydrogen 95.3 0.1 2.2E-06 50.3 9.1 103 149-255 4-125 (426)
368 cd05188 MDR Medium chain reduc 95.3 0.17 3.7E-06 44.1 10.0 111 147-262 134-259 (271)
369 PLN03209 translocon at the inn 95.3 0.1 2.3E-06 51.8 9.2 64 146-209 78-169 (576)
370 COG2344 AT-rich DNA-binding pr 95.2 0.02 4.3E-07 48.5 3.5 62 150-211 86-158 (211)
371 TIGR01019 sucCoAalpha succinyl 95.2 0.2 4.4E-06 45.6 10.3 109 147-258 5-119 (286)
372 PRK04148 hypothetical protein; 95.2 0.026 5.7E-07 45.5 3.9 62 147-209 16-87 (134)
373 PRK07806 short chain dehydroge 95.1 0.093 2E-06 45.7 7.7 37 145-181 3-40 (248)
374 PRK08192 aspartate carbamoyltr 95.1 0.13 2.8E-06 48.0 8.9 91 145-235 156-274 (338)
375 PRK13529 malate dehydrogenase; 95.0 0.33 7.1E-06 48.0 11.8 140 93-259 263-444 (563)
376 PLN02948 phosphoribosylaminoim 95.0 0.06 1.3E-06 53.8 6.9 65 144-208 18-92 (577)
377 TIGR01381 E1_like_apg7 E1-like 95.0 0.055 1.2E-06 54.2 6.5 35 144-178 334-369 (664)
378 PRK05442 malate dehydrogenase; 95.0 0.23 5E-06 46.1 10.2 97 149-247 5-140 (326)
379 COG1004 Ugd Predicted UDP-gluc 95.0 0.075 1.6E-06 50.1 6.9 84 146-233 308-406 (414)
380 TIGR01851 argC_other N-acetyl- 95.0 0.12 2.6E-06 47.5 8.1 76 150-235 3-80 (310)
381 cd05290 LDH_3 A subgroup of L- 95.0 0.044 9.5E-07 50.4 5.4 59 150-208 1-77 (307)
382 PRK00141 murD UDP-N-acetylmura 95.0 0.036 7.9E-07 53.9 5.1 110 145-254 12-148 (473)
383 PRK04690 murD UDP-N-acetylmura 95.0 0.053 1.1E-06 52.8 6.2 108 146-253 6-141 (468)
384 PTZ00325 malate dehydrogenase; 94.9 0.084 1.8E-06 48.9 7.2 95 146-240 6-130 (321)
385 cd00704 MDH Malate dehydrogena 94.9 0.26 5.7E-06 45.6 10.4 95 150-246 2-135 (323)
386 PLN03129 NADP-dependent malic 94.9 0.36 7.7E-06 47.9 11.7 119 93-238 289-439 (581)
387 PRK12562 ornithine carbamoyltr 94.9 0.16 3.5E-06 47.3 8.9 128 88-236 117-276 (334)
388 PRK00421 murC UDP-N-acetylmura 94.9 0.048 1E-06 52.8 5.7 108 146-253 5-133 (461)
389 COG0281 SfcA Malic enzyme [Ene 94.9 0.15 3.4E-06 48.3 8.7 140 71-239 135-304 (432)
390 PF00070 Pyr_redox: Pyridine n 94.8 0.051 1.1E-06 39.2 4.4 35 150-184 1-35 (80)
391 PRK15182 Vi polysaccharide bio 94.8 0.15 3.2E-06 49.1 8.7 94 143-239 309-416 (425)
392 PRK01368 murD UDP-N-acetylmura 94.8 0.053 1.2E-06 52.6 5.7 106 147-253 5-130 (454)
393 PRK09880 L-idonate 5-dehydroge 94.8 0.12 2.6E-06 47.8 7.8 85 147-236 169-267 (343)
394 PLN00106 malate dehydrogenase 94.8 0.091 2E-06 48.7 6.9 93 147-239 17-139 (323)
395 PF05368 NmrA: NmrA-like famil 94.8 0.021 4.6E-07 49.7 2.6 60 151-210 1-75 (233)
396 TIGR01161 purK phosphoribosyla 94.7 0.06 1.3E-06 50.2 5.7 56 150-205 1-66 (352)
397 PRK15116 sulfur acceptor prote 94.7 0.19 4.2E-06 45.3 8.7 37 144-180 26-63 (268)
398 TIGR03649 ergot_EASG ergot alk 94.7 0.073 1.6E-06 47.7 6.1 61 150-210 1-78 (285)
399 COG0673 MviM Predicted dehydro 94.7 0.045 9.8E-07 50.3 4.7 65 148-212 3-80 (342)
400 PTZ00317 NADP-dependent malic 94.6 0.51 1.1E-05 46.6 11.9 139 94-259 266-443 (559)
401 PRK13376 pyrB bifunctional asp 94.6 0.24 5.2E-06 48.8 9.6 91 145-235 171-293 (525)
402 PRK06392 homoserine dehydrogen 94.6 0.18 4E-06 46.7 8.5 104 149-253 1-135 (326)
403 PRK11064 wecC UDP-N-acetyl-D-m 94.5 0.1 2.2E-06 50.0 7.0 66 143-208 315-395 (415)
404 PRK08040 putative semialdehyde 94.5 0.11 2.5E-06 48.3 6.9 83 147-235 3-97 (336)
405 cd01489 Uba2_SUMO Ubiquitin ac 94.5 0.19 4E-06 46.4 8.3 31 150-180 1-32 (312)
406 PLN02662 cinnamyl-alcohol dehy 94.5 0.11 2.5E-06 47.1 6.9 62 147-208 3-85 (322)
407 TIGR01758 MDH_euk_cyt malate d 94.4 0.32 6.9E-06 45.1 9.7 93 150-244 1-132 (324)
408 PRK04308 murD UDP-N-acetylmura 94.4 0.32 6.9E-06 46.8 10.1 109 146-254 3-137 (445)
409 TIGR01772 MDH_euk_gproteo mala 94.4 0.18 3.9E-06 46.5 7.9 91 150-242 1-121 (312)
410 PRK07200 aspartate/ornithine c 94.4 0.28 6.1E-06 46.7 9.3 91 145-235 184-330 (395)
411 TIGR01202 bchC 2-desacetyl-2-h 94.3 0.11 2.5E-06 47.3 6.5 85 147-236 144-232 (308)
412 TIGR03215 ac_ald_DH_ac acetald 94.3 0.16 3.4E-06 46.3 7.2 82 149-235 2-95 (285)
413 PLN02214 cinnamoyl-CoA reducta 94.3 0.13 2.8E-06 47.7 6.8 63 146-208 8-90 (342)
414 PF00899 ThiF: ThiF family; I 94.3 0.04 8.6E-07 44.1 3.0 34 148-181 2-36 (135)
415 PLN00112 malate dehydrogenase 94.3 0.28 6E-06 47.4 9.2 101 149-251 101-240 (444)
416 PRK14851 hypothetical protein; 94.2 0.11 2.3E-06 52.9 6.5 36 144-179 39-75 (679)
417 COG0540 PyrB Aspartate carbamo 94.2 0.31 6.7E-06 44.5 8.8 141 69-235 103-272 (316)
418 KOG4230 C1-tetrahydrofolate sy 94.2 0.12 2.5E-06 50.9 6.3 81 144-240 158-239 (935)
419 PLN02586 probable cinnamyl alc 94.2 0.24 5.2E-06 46.2 8.5 84 147-235 183-278 (360)
420 PF04321 RmlD_sub_bind: RmlD s 94.2 0.071 1.5E-06 48.3 4.7 58 149-209 1-61 (286)
421 cd08230 glucose_DH Glucose deh 94.1 0.09 2E-06 48.8 5.5 85 147-236 172-270 (355)
422 PRK10206 putative oxidoreducta 94.1 0.084 1.8E-06 49.2 5.2 63 149-211 2-76 (344)
423 cd01488 Uba3_RUB Ubiquitin act 94.1 0.21 4.6E-06 45.6 7.7 30 150-179 1-31 (291)
424 PLN02427 UDP-apiose/xylose syn 94.1 0.11 2.3E-06 48.9 6.0 65 143-207 9-94 (386)
425 PF03447 NAD_binding_3: Homose 94.0 0.024 5.2E-07 44.2 1.2 95 155-254 1-112 (117)
426 PRK15181 Vi polysaccharide bio 94.0 0.12 2.5E-06 48.1 6.0 36 146-181 13-49 (348)
427 TIGR03366 HpnZ_proposed putati 94.0 0.13 2.9E-06 46.0 6.2 85 147-236 120-219 (280)
428 TIGR01532 E4PD_g-proteo D-eryt 94.0 0.12 2.6E-06 48.0 5.9 29 150-178 1-33 (325)
429 PLN02695 GDP-D-mannose-3',5'-e 94.0 0.12 2.6E-06 48.5 6.1 61 147-207 20-93 (370)
430 TIGR01759 MalateDH-SF1 malate 94.0 0.18 3.9E-06 46.7 7.1 60 149-208 4-88 (323)
431 COG0078 ArgF Ornithine carbamo 93.9 0.45 9.8E-06 43.4 9.3 90 146-235 151-270 (310)
432 PRK07523 gluconate 5-dehydroge 93.9 0.12 2.5E-06 45.4 5.6 38 145-182 7-45 (255)
433 PLN00141 Tic62-NAD(P)-related 93.9 0.1 2.2E-06 46.0 5.1 65 145-209 14-95 (251)
434 PLN02657 3,8-divinyl protochlo 93.9 0.12 2.5E-06 49.1 5.8 66 143-208 55-145 (390)
435 PRK06523 short chain dehydroge 93.9 0.41 8.8E-06 42.0 9.0 40 143-182 4-44 (260)
436 cd01484 E1-2_like Ubiquitin ac 93.9 0.26 5.6E-06 43.6 7.6 30 150-179 1-31 (234)
437 TIGR03466 HpnA hopanoid-associ 93.9 0.11 2.4E-06 47.1 5.5 60 149-208 1-73 (328)
438 KOG0399 Glutamate synthase [Am 93.8 0.17 3.6E-06 53.5 7.0 65 146-210 1783-1881(2142)
439 PLN02819 lysine-ketoglutarate 93.8 0.059 1.3E-06 57.1 3.9 121 146-266 201-389 (1042)
440 TIGR01087 murD UDP-N-acetylmur 93.8 0.38 8.3E-06 46.0 9.3 104 150-254 1-129 (433)
441 TIGR03736 PRTRC_ThiF PRTRC sys 93.8 0.24 5.1E-06 44.1 7.2 86 147-236 10-142 (244)
442 PRK05865 hypothetical protein; 93.8 0.31 6.7E-06 50.8 9.0 90 149-238 1-105 (854)
443 PRK04523 N-acetylornithine car 93.7 0.74 1.6E-05 42.9 10.7 96 146-242 166-304 (335)
444 TIGR01296 asd_B aspartate-semi 93.7 0.16 3.5E-06 47.4 6.3 81 150-235 1-92 (339)
445 cd01336 MDH_cytoplasmic_cytoso 93.7 0.19 4.1E-06 46.6 6.7 59 150-208 4-87 (325)
446 TIGR01214 rmlD dTDP-4-dehydror 93.5 0.14 3.1E-06 45.6 5.5 56 150-208 1-59 (287)
447 PRK08628 short chain dehydroge 93.5 0.15 3.2E-06 44.8 5.5 39 144-182 3-42 (258)
448 cd01491 Ube1_repeat1 Ubiquitin 93.5 0.42 9.1E-06 43.5 8.4 38 144-181 15-53 (286)
449 PRK06728 aspartate-semialdehyd 93.5 0.32 7E-06 45.5 7.9 82 147-235 4-99 (347)
450 cd08237 ribitol-5-phosphate_DH 93.5 0.26 5.5E-06 45.6 7.3 88 147-236 163-257 (341)
451 PRK10537 voltage-gated potassi 93.5 0.18 3.9E-06 48.0 6.3 83 148-232 240-333 (393)
452 PLN02989 cinnamyl-alcohol dehy 93.5 0.24 5.2E-06 45.2 6.9 62 147-208 4-86 (325)
453 PRK08664 aspartate-semialdehyd 93.5 0.32 7E-06 45.5 7.9 80 149-235 4-107 (349)
454 COG0039 Mdh Malate/lactate deh 93.4 0.2 4.4E-06 46.1 6.3 59 149-207 1-77 (313)
455 PRK01438 murD UDP-N-acetylmura 93.4 0.12 2.6E-06 50.3 5.0 109 144-253 12-148 (480)
456 PLN02896 cinnamyl-alcohol dehy 93.4 0.14 3E-06 47.6 5.2 65 143-207 5-87 (353)
457 cd01337 MDH_glyoxysomal_mitoch 93.3 0.24 5.1E-06 45.7 6.6 88 149-237 1-119 (310)
458 PRK05884 short chain dehydroge 93.3 0.15 3.3E-06 44.1 5.2 33 150-182 2-35 (223)
459 PRK07370 enoyl-(acyl carrier p 93.3 0.18 4E-06 44.6 5.7 36 145-180 3-41 (258)
460 PRK12937 short chain dehydroge 93.2 0.36 7.8E-06 41.8 7.4 35 146-180 3-38 (245)
461 PRK08374 homoserine dehydrogen 93.2 0.56 1.2E-05 43.7 9.0 100 149-253 3-141 (336)
462 TIGR01777 yfcH conserved hypot 93.2 0.19 4.1E-06 44.7 5.7 57 152-208 2-66 (292)
463 PRK03803 murD UDP-N-acetylmura 93.2 0.51 1.1E-05 45.5 9.0 105 148-253 6-134 (448)
464 TIGR02622 CDP_4_6_dhtase CDP-g 93.1 0.2 4.4E-06 46.3 6.0 37 146-182 2-39 (349)
465 COG0677 WecC UDP-N-acetyl-D-ma 93.1 1 2.2E-05 42.7 10.3 91 142-237 316-421 (436)
466 PRK08265 short chain dehydroge 93.1 0.35 7.5E-06 42.7 7.1 38 145-182 3-41 (261)
467 PRK06196 oxidoreductase; Provi 93.0 0.19 4.2E-06 45.8 5.6 38 145-182 23-61 (315)
468 PRK07533 enoyl-(acyl carrier p 93.0 0.42 9.2E-06 42.2 7.6 37 145-181 7-46 (258)
469 cd05283 CAD1 Cinnamyl alcohol 92.9 0.3 6.4E-06 44.9 6.8 85 147-236 169-264 (337)
470 PRK14852 hypothetical protein; 92.9 0.16 3.4E-06 53.3 5.3 36 144-179 328-364 (989)
471 TIGR01757 Malate-DH_plant mala 92.9 0.67 1.5E-05 44.0 9.1 98 149-248 45-181 (387)
472 PRK08324 short chain dehydroge 92.9 0.17 3.6E-06 51.7 5.4 40 144-183 418-458 (681)
473 COG1063 Tdh Threonine dehydrog 92.8 0.29 6.2E-06 45.8 6.5 83 150-237 171-271 (350)
474 PRK06398 aldose dehydrogenase; 92.8 0.53 1.2E-05 41.5 7.9 39 145-183 3-42 (258)
475 cd01485 E1-1_like Ubiquitin ac 92.7 0.11 2.3E-06 44.7 3.2 37 144-180 15-52 (198)
476 PRK07231 fabG 3-ketoacyl-(acyl 92.7 0.29 6.2E-06 42.5 6.0 39 145-183 2-41 (251)
477 TIGR01771 L-LDH-NAD L-lactate 92.7 0.16 3.5E-06 46.5 4.5 84 153-236 1-114 (299)
478 PRK08264 short chain dehydroge 92.7 0.24 5.1E-06 42.8 5.4 39 145-183 3-43 (238)
479 PLN02986 cinnamyl-alcohol dehy 92.7 0.37 8.1E-06 43.9 7.0 62 147-208 4-86 (322)
480 KOG3007 Mu-crystallin [Amino a 92.6 0.095 2.1E-06 46.9 2.8 101 149-252 139-278 (333)
481 PRK06079 enoyl-(acyl carrier p 92.5 0.3 6.6E-06 43.0 6.0 36 145-180 4-42 (252)
482 TIGR02822 adh_fam_2 zinc-bindi 92.5 0.32 6.9E-06 44.8 6.3 85 147-236 165-255 (329)
483 cd08239 THR_DH_like L-threonin 92.5 0.3 6.4E-06 44.8 6.1 86 147-237 163-264 (339)
484 PRK07889 enoyl-(acyl carrier p 92.5 0.21 4.4E-06 44.2 4.8 37 145-181 4-43 (256)
485 PRK08862 short chain dehydroge 92.4 0.16 3.4E-06 44.3 4.0 39 145-183 2-41 (227)
486 PRK07984 enoyl-(acyl carrier p 92.4 0.25 5.5E-06 44.0 5.4 35 146-180 4-41 (262)
487 PRK12939 short chain dehydroge 92.3 0.18 4E-06 43.7 4.3 38 145-182 4-42 (250)
488 COG0002 ArgC Acetylglutamate s 92.3 0.73 1.6E-05 42.8 8.2 95 149-248 3-114 (349)
489 TIGR00978 asd_EA aspartate-sem 92.3 0.47 1E-05 44.2 7.2 82 149-235 1-104 (341)
490 PLN02178 cinnamyl-alcohol dehy 92.3 0.47 1E-05 44.7 7.3 84 147-235 178-273 (375)
491 PRK06598 aspartate-semialdehyd 92.3 0.36 7.7E-06 45.6 6.3 80 149-235 2-98 (369)
492 TIGR01832 kduD 2-deoxy-D-gluco 92.2 0.22 4.7E-06 43.3 4.7 37 145-181 2-39 (248)
493 PRK08594 enoyl-(acyl carrier p 92.2 0.68 1.5E-05 40.9 7.9 37 145-181 4-43 (257)
494 PRK05671 aspartate-semialdehyd 92.2 0.41 8.9E-06 44.6 6.7 81 149-235 5-97 (336)
495 PRK07825 short chain dehydroge 92.2 0.37 8E-06 42.7 6.2 38 145-182 2-40 (273)
496 PRK09987 dTDP-4-dehydrorhamnos 92.2 0.33 7.2E-06 44.0 6.0 58 149-207 1-62 (299)
497 cd08281 liver_ADH_like1 Zinc-d 92.0 0.31 6.7E-06 45.6 5.7 85 147-236 191-291 (371)
498 PLN02514 cinnamyl-alcohol dehy 92.0 0.41 8.9E-06 44.5 6.5 85 147-236 180-276 (357)
499 PRK07424 bifunctional sterol d 92.0 0.21 4.6E-06 47.7 4.6 63 145-207 175-253 (406)
500 cd08245 CAD Cinnamyl alcohol d 92.0 0.66 1.4E-05 42.2 7.7 84 147-235 162-256 (330)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-63 Score=453.61 Aligned_cols=245 Identities=29% Similarity=0.419 Sum_probs=227.6
Q ss_pred hHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHH
Q 043239 39 HSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV 118 (286)
Q Consensus 39 ~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~ 118 (286)
++.+.+.+.++|++++ +.+++++++++.+|+||+|++.++|+||||+++++++||.|+|+|+.|+.+||||+++++|++
T Consensus 36 ~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~ 114 (324)
T COG0111 36 EEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLAL 114 (324)
T ss_pred hHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHH
Confidence 4445566789999998 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC-CC---CcccccCHH
Q 043239 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-GV---SYPFYANVS 194 (286)
Q Consensus 119 ~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~-~~---~~~~~~~l~ 194 (286)
.|+++.++..+++|.|.+. ...+.+|+|||+||||+|.||+.+|+++++|||+|.+||+...+ .. +.....+|+
T Consensus 115 ~R~~~~~~~~~~~g~W~~~--~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld 192 (324)
T COG0111 115 ARRIPDADASQRRGEWDRK--AFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLD 192 (324)
T ss_pred hcCchhhHHHHHcCCcccc--ccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHH
Confidence 9999999999999999962 23577999999999999999999999999999999999994433 22 344567899
Q ss_pred HhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc
Q 043239 195 GLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH 274 (286)
Q Consensus 195 e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~ 274 (286)
+++++||+|++|+|+|++|+++|+++.|.+||+|++|||+|||++||++||++||++|+|+||+||||+.||++.+++|+
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~ 272 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLW 272 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc--cccccccCC
Q 043239 275 WIM--LCCLHMLLW 286 (286)
Q Consensus 275 ~~~--~~tph~~~~ 286 (286)
..+ ++||||||+
T Consensus 273 ~~pnV~~TPHia~~ 286 (324)
T COG0111 273 DLPNVILTPHIGGS 286 (324)
T ss_pred cCCCeEECCccccc
Confidence 888 889999985
No 2
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-62 Score=447.20 Aligned_cols=266 Identities=24% Similarity=0.337 Sum_probs=232.8
Q ss_pred CCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCe
Q 043239 15 GCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI 94 (286)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI 94 (286)
+...+.+++.+++..+. . .+ .+.+.+.++++|+++++ ..++++++++++|+||+|++.|+|+||||+++|+++||
T Consensus 13 ~~~~~~l~~~~~~~~~~-~--~~-~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI 87 (311)
T PRK08410 13 DKDLSVFEEFGDFQIYP-T--TS-PEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGI 87 (311)
T ss_pred hhhHHHHhhCceEEEeC-C--CC-HHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCC
Confidence 44556676666555443 1 11 33345567899999885 56899999999999999999999999999999999999
Q ss_pred EEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC----CCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239 95 LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY----PLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170 (286)
Q Consensus 95 ~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~----~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~ 170 (286)
.|+|+|++++.+||||++++||+++|++..+++.+++|.|.....+ ..+++|+|+|+||||+|+||+.+|+++++|
T Consensus 88 ~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f 167 (311)
T PRK08410 88 AVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAF 167 (311)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999753211 124689999999999999999999999999
Q ss_pred CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 171 GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 171 g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
||+|++|+|+...........++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||+
T Consensus 168 gm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 168 GAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred CCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999975433222235699999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeEEEeeccCCCCCCcCCcccc-----cccccccccCC
Q 043239 251 RGSLVELVLMCLRTSLMCQRSCLHW-----IMLCCLHMLLW 286 (286)
Q Consensus 251 ~~~i~ga~lDv~~~e~~~~~~~l~~-----~~~~tph~~~~ 286 (286)
+|+|+ |+||||+.||++.+++|+. +.++|||+||+
T Consensus 248 ~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~ 287 (311)
T PRK08410 248 EKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWA 287 (311)
T ss_pred cCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccC
Confidence 99999 9999999999999998884 56999999986
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=5.8e-62 Score=445.90 Aligned_cols=273 Identities=30% Similarity=0.464 Sum_probs=241.1
Q ss_pred cCCCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHh
Q 043239 11 RGAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECR 90 (286)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~ 90 (286)
+.+++...+++.+.|++..+........ .+.+..+++|++++....++++++++++|+||+|++.|+|+||||+++|+
T Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~ 86 (324)
T COG1052 9 RKLPPEVLERLKEKFEVERYEDDLTPDT--ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAK 86 (324)
T ss_pred CcCCHHHHHHhhccEEEEEeccCCccch--HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHH
Confidence 3466667888888888766653322222 45566789999999777899999999999999999999999999999999
Q ss_pred hcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC--CCCCcccCCCCEEEEEcCChHHHHHHHHhc
Q 043239 91 RRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG--AYPLGSTLGGKRVGIVGLGSIGSEVAKRLV 168 (286)
Q Consensus 91 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~--~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~ 168 (286)
++||.|+|+|++++.+||||++++||++.|++.++++++++|.|...+ ....+.+++|||+||||+|+||+++|++++
T Consensus 87 ~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~ 166 (324)
T COG1052 87 ERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLK 166 (324)
T ss_pred HCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998753 234688999999999999999999999999
Q ss_pred cCCCEEEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 043239 169 PFGCSIAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKE 244 (286)
Q Consensus 169 ~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~a 244 (286)
+|||+|.+|+|++.+. .++. +.+++|++++||+|++|||++++|+++|+++.|++||+|++|||+|||++||++|
T Consensus 167 ~Fgm~v~y~~~~~~~~~~~~~~~~-y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~A 245 (324)
T COG1052 167 GFGMKVLYYDRSPNPEAEKELGAR-YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQA 245 (324)
T ss_pred cCCCEEEEECCCCChHHHhhcCce-eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHH
Confidence 9999999999987521 1233 4459999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeEEEeeccCCCCCCcCCccc--cc---ccccccccCC
Q 043239 245 LVHFLVRGSLVELVLMCLRTSLMCQRSCLH--WI---MLCCLHMLLW 286 (286)
Q Consensus 245 l~~al~~~~i~ga~lDv~~~e~~~~~~~l~--~~---~~~tph~~~~ 286 (286)
|++||++|+|.||+||||+.||...+.++. .+ .++|||||++
T Consensus 246 Li~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~a 292 (324)
T COG1052 246 LIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASA 292 (324)
T ss_pred HHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccc
Confidence 999999999999999999999986555555 34 6999999985
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-61 Score=442.03 Aligned_cols=268 Identities=24% Similarity=0.332 Sum_probs=232.4
Q ss_pred CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239 13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR 92 (286)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~ 92 (286)
+.+...+.+++.++.+.+... . ..+.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+||||+++++++
T Consensus 13 ~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~ 88 (317)
T PRK06487 13 LGDLDLSPLEQAFDELQLHDA-T--TPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNVDLAAARER 88 (317)
T ss_pred ccccchhHHHhhCCeEEEecC-C--CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHC
Confidence 334455667666543333311 1 234455667899998875 467999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC----CCcccCCCCEEEEEcCChHHHHHHHHhc
Q 043239 93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY----PLGSTLGGKRVGIVGLGSIGSEVAKRLV 168 (286)
Q Consensus 93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~----~~~~~l~g~~vgIiG~G~iG~~~A~~l~ 168 (286)
||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.+...+ ..+.+|.|+++||||+|+||+.+|++++
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999754211 1346899999999999999999999999
Q ss_pred cCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239 169 PFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248 (286)
Q Consensus 169 ~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a 248 (286)
+|||+|.+|+++.... . ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++|
T Consensus 169 ~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~A 246 (317)
T PRK06487 169 AFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADA 246 (317)
T ss_pred hCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHH
Confidence 9999999999864322 1 2245899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeEEEeeccCCCCCCcCCccc----ccccccccccCC
Q 043239 249 LVRGSLVELVLMCLRTSLMCQRSCLH----WIMLCCLHMLLW 286 (286)
Q Consensus 249 l~~~~i~ga~lDv~~~e~~~~~~~l~----~~~~~tph~~~~ 286 (286)
|++|+|+||+||||+.||++.+++|+ .+.++|||+||+
T Consensus 247 L~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 247 LRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccC
Confidence 99999999999999999999888887 456999999985
No 5
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.9e-61 Score=444.02 Aligned_cols=270 Identities=24% Similarity=0.361 Sum_probs=234.1
Q ss_pred CCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCe
Q 043239 15 GCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI 94 (286)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI 94 (286)
+...+.|.+.+++..+....+.+ .+.+.+.+.++|+++++ ..++++++++++|+||+|++.|+|+||||+++|+++||
T Consensus 13 ~~~~~~l~~~~~v~~~~~~~~~~-~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI 90 (323)
T PRK15409 13 DDLLQRLEEHFTVTQVANLSPET-VEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKI 90 (323)
T ss_pred HHHHHHHHhcCcEEEcCCCCCCC-HHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecccccHHHHHHCCC
Confidence 44556677667665443111222 33345567899999875 45799999999999999999999999999999999999
Q ss_pred EEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhc-cCCC
Q 043239 95 LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLV-PFGC 172 (286)
Q Consensus 95 ~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~-~~g~ 172 (286)
.|+|+|++++.+||||++++||+++|++..+++.+++|.|.... ....+.+|+|+++||||+|+||+.+|++++ +|||
T Consensus 91 ~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm 170 (323)
T PRK15409 91 LLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNM 170 (323)
T ss_pred EEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999997431 122478999999999999999999999998 9999
Q ss_pred EEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239 173 SIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249 (286)
Q Consensus 173 ~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al 249 (286)
+|.+|+|...... ....+.++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||
T Consensus 171 ~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL 250 (323)
T PRK15409 171 PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAAL 250 (323)
T ss_pred EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHH
Confidence 9999998754321 1123569999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239 250 VRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW 286 (286)
Q Consensus 250 ~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~ 286 (286)
++|+|+||+||||+.||++.+++|+..+ ++|||+||+
T Consensus 251 ~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~ 289 (323)
T PRK15409 251 QKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSA 289 (323)
T ss_pred HcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCC
Confidence 9999999999999999998888887665 999999985
No 6
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-60 Score=434.08 Aligned_cols=245 Identities=22% Similarity=0.348 Sum_probs=221.4
Q ss_pred HHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239 40 SFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL 119 (286)
Q Consensus 40 ~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~ 119 (286)
+...+.++++|++++. ..++++++++++|+||||++.++|+||||++++.++||.|+|+|++++.+||||++++||++.
T Consensus 36 ~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~ 114 (314)
T PRK06932 36 EQTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALK 114 (314)
T ss_pred HHHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHH
Confidence 3345567899998874 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHcCCCCCCCCC----CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHH
Q 043239 120 RRVSSIDRFVRNGLWPDHGAY----PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSG 195 (286)
Q Consensus 120 R~~~~~~~~~~~~~w~~~~~~----~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e 195 (286)
|+++.+++.+++|.|.....+ ..+.+|+|+++||||+|.||+.+|+++++|||+|.+|+++...... ..+.++++
T Consensus 115 R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~e 193 (314)
T PRK06932 115 HSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFEE 193 (314)
T ss_pred hChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHHH
Confidence 999999999999999753211 1356899999999999999999999999999999999986432211 12568999
Q ss_pred hhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc-
Q 043239 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH- 274 (286)
Q Consensus 196 ~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~- 274 (286)
++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||+.||++.+++++
T Consensus 194 ll~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~ 273 (314)
T PRK06932 194 VLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQ 273 (314)
T ss_pred HHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -----ccccccccccCC
Q 043239 275 -----WIMLCCLHMLLW 286 (286)
Q Consensus 275 -----~~~~~tph~~~~ 286 (286)
.+.++|||+||+
T Consensus 274 ~~~~~pnvilTPHia~~ 290 (314)
T PRK06932 274 AAKRLPNLLITPHIAWA 290 (314)
T ss_pred hhcCCCCEEECCccccC
Confidence 566999999986
No 7
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-59 Score=437.28 Aligned_cols=268 Identities=22% Similarity=0.296 Sum_probs=233.9
Q ss_pred CchhhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeC--CCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcC
Q 043239 17 FNPPLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLG--PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRG 93 (286)
Q Consensus 17 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g 93 (286)
+.+.|++. ++++... ..+ ..++.+.+.+.++|++++.. ..++++++++++|+||||++.|+|+||||+++|+++|
T Consensus 67 ~~~~l~~~g~~~v~~~-~~~-~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~g 144 (386)
T PLN03139 67 IRDWLESQGHQYIVTD-DKE-GPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAG 144 (386)
T ss_pred HHHHHHhcCCeEEEeC-CCC-CCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCC
Confidence 34556655 4554443 222 22444556678999998853 2469999999999999999999999999999999999
Q ss_pred eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCE
Q 043239 94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS 173 (286)
Q Consensus 94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~ 173 (286)
|.|+|++++++.+||||++++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|++|++||++
T Consensus 145 I~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~ 224 (386)
T PLN03139 145 LTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 224 (386)
T ss_pred eEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999999999999999753222356899999999999999999999999999999
Q ss_pred EEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239 174 IAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248 (286)
Q Consensus 174 V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a 248 (286)
|.+||++..... +.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|+++
T Consensus 225 V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A 304 (386)
T PLN03139 225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADA 304 (386)
T ss_pred EEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHH
Confidence 999998753321 233456999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239 249 LVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW 286 (286)
Q Consensus 249 l~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~ 286 (286)
|++|+|+||+||||++||++.+++|+.++ ++|||+||+
T Consensus 305 L~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~ 344 (386)
T PLN03139 305 CSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGT 344 (386)
T ss_pred HHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEccccccc
Confidence 99999999999999999999999888776 999999985
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=2.3e-59 Score=432.55 Aligned_cols=271 Identities=30% Similarity=0.437 Sum_probs=234.7
Q ss_pred CCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcC
Q 043239 14 PGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRG 93 (286)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g 93 (286)
++...+.+.+.+++..+.+..+.+ .+.+.+.++++|+++++...++++++++++|+||||+++|+|+||||+++++++|
T Consensus 12 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~g 90 (333)
T PRK13243 12 PENGIEMLEEHFEVEVWEDEREIP-REVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRG 90 (333)
T ss_pred CHHHHHHHhcCceEEEecCCCCCC-HHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcC
Confidence 344556677666654443111122 3444566789999998766689999999999999999999999999999999999
Q ss_pred eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCC-----CCCcccCCCCEEEEEcCChHHHHHHHHhc
Q 043239 94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA-----YPLGSTLGGKRVGIVGLGSIGSEVAKRLV 168 (286)
Q Consensus 94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~-----~~~~~~l~g~~vgIiG~G~iG~~~A~~l~ 168 (286)
|.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+... ...+.+|.|++|||||+|.||+.+|++|+
T Consensus 91 I~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~ 170 (333)
T PRK13243 91 IYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAK 170 (333)
T ss_pred CEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999974311 12468999999999999999999999999
Q ss_pred cCCCEEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239 169 PFGCSIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL 245 (286)
Q Consensus 169 ~~g~~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al 245 (286)
+||++|.+|+|+..... ......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|
T Consensus 171 ~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL 250 (333)
T PRK13243 171 GFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKAL 250 (333)
T ss_pred HCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHH
Confidence 99999999999765422 111346899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239 246 VHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW 286 (286)
Q Consensus 246 ~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~ 286 (286)
+++|++|+|+||+||||+.||++ +++|+.++ ++|||+||+
T Consensus 251 ~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~ 292 (333)
T PRK13243 251 VKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSA 292 (333)
T ss_pred HHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcC
Confidence 99999999999999999999987 77787665 999999986
No 9
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-59 Score=434.16 Aligned_cols=265 Identities=25% Similarity=0.375 Sum_probs=231.9
Q ss_pred hhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeC--CCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEE
Q 043239 20 PLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLG--PSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILV 96 (286)
Q Consensus 20 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v 96 (286)
.+++. ++++... ..+ ..++.+.+.+.++|+++++. ..++++++++++|+||||+++|+|+||||+++++++||.|
T Consensus 63 ~l~~~g~e~~~~~-~~~-~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 63 FLEERGHELVVTS-DKD-GPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHhcCcEEEEeC-CCC-CCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEE
Confidence 45554 4544433 222 12344556678999999853 3579999999999999999999999999999999999999
Q ss_pred EecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEE
Q 043239 97 TNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY 176 (286)
Q Consensus 97 ~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~ 176 (286)
+|++++++.+||||++++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|++|++||++|.+
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999854222346789999999999999999999999999999999
Q ss_pred ECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 177 TSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 177 ~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
|||+.... .+.....+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||++||++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99976321 1333457999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239 252 GSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW 286 (286)
Q Consensus 252 ~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~ 286 (286)
|+|+||+||||+.||++.+++|+.++ ++|||+||+
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~ 337 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGT 337 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccC
Confidence 99999999999999999999888766 999999985
No 10
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-58 Score=437.37 Aligned_cols=268 Identities=21% Similarity=0.242 Sum_probs=232.1
Q ss_pred CCCCchhhhCC-C-cEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhh
Q 043239 14 PGCFNPPLSER-F-TLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRR 91 (286)
Q Consensus 14 ~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~ 91 (286)
.+...+.+.+. + ++..+. . .. .++.+.+.++++|++++++..++++++++++|+||||++.|+|+||||+++|++
T Consensus 20 ~~~~~~~l~~~~~~~v~~~~-~-~~-~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~ 96 (409)
T PRK11790 20 HQSAVEVLRAAGYTNIEYHK-G-AL-DEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAK 96 (409)
T ss_pred CHHHHHHHHhcCCceEEECC-C-CC-CHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceecccccHHHHHh
Confidence 34445556553 4 443332 1 11 233445667899999877667899999999999999999999999999999999
Q ss_pred cCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCC
Q 043239 92 RGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG 171 (286)
Q Consensus 92 ~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g 171 (286)
+||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+. ...+.+|.|+++||||+|+||+.+|+++++||
T Consensus 97 ~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fG 174 (409)
T PRK11790 97 RGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS--AAGSFEVRGKTLGIVGYGHIGTQLSVLAESLG 174 (409)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc--ccCcccCCCCEEEEECCCHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999853 13578999999999999999999999999999
Q ss_pred CEEEEECCCCCCCC-CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 172 CSIAYTSRKKKPGV-SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 172 ~~V~~~~r~~~~~~-~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
|+|++||++..... +.....+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|+
T Consensus 175 m~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 175 MRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 99999998754332 23345699999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeEEEeeccCCCCCCcC----Ccccccc--cccccccCC
Q 043239 251 RGSLVELVLMCLRTSLMCQR----SCLHWIM--LCCLHMLLW 286 (286)
Q Consensus 251 ~~~i~ga~lDv~~~e~~~~~----~~l~~~~--~~tph~~~~ 286 (286)
+|+|+||+||||+.||++.+ ++|+..+ ++|||+||+
T Consensus 255 ~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~ 296 (409)
T PRK11790 255 SGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS 296 (409)
T ss_pred cCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence 99999999999999998763 4566555 999999986
No 11
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.8e-57 Score=420.46 Aligned_cols=240 Identities=23% Similarity=0.369 Sum_probs=219.5
Q ss_pred HHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCC---CCcChHHHHHHHHHHH
Q 043239 42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNA---FSEDGADYVVGLLVDV 118 (286)
Q Consensus 42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~l~~~L~~ 118 (286)
+.+.++++|+++++ ..++++++++.+|+||||++.++|+|++|++++.++||.|+|+|++ ++.+||||+++++|++
T Consensus 55 ~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~ 133 (347)
T PLN02928 55 VPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGL 133 (347)
T ss_pred HHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHH
Confidence 45567899998875 4679999999999999999999999999999999999999999975 7899999999999999
Q ss_pred HhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC------------
Q 043239 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS------------ 186 (286)
Q Consensus 119 ~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~------------ 186 (286)
+|++..+++.++++.|.. ..+.+|.|+++||||+|.||+.+|++|++|||+|++|+|+......
T Consensus 134 ~R~~~~~~~~~~~~~w~~----~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~ 209 (347)
T PLN02928 134 LRKQNEMQISLKARRLGE----PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDD 209 (347)
T ss_pred HhCHHHHHHHHHcCCccc----ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccc
Confidence 999999999999999964 2567899999999999999999999999999999999997432110
Q ss_pred ----cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeecc
Q 043239 187 ----YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCL 262 (286)
Q Consensus 187 ----~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~ 262 (286)
.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||
T Consensus 210 ~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 210 LVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred cccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 1135689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCcccccc--cccccccCC
Q 043239 263 RTSLMCQRSCLHWIM--LCCLHMLLW 286 (286)
Q Consensus 263 ~~e~~~~~~~l~~~~--~~tph~~~~ 286 (286)
+.||++.+++|+..+ ++|||+|++
T Consensus 290 ~~EP~~~~~pL~~~~nviiTPHia~~ 315 (347)
T PLN02928 290 WSEPFDPDDPILKHPNVIITPHVAGV 315 (347)
T ss_pred CCCCCCCCChhhcCCCEEECCcCCCC
Confidence 999999999887766 999999986
No 12
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=7e-57 Score=421.55 Aligned_cols=268 Identities=21% Similarity=0.297 Sum_probs=225.1
Q ss_pred chhhhCC-CcEEecCCCCCCCchHHHHhcc-CCceEEEEeCCCCCCHHHhccCCC--ccEEEEcCCCCCcCChhHHhhcC
Q 043239 18 NPPLSER-FTLLDPLLHSADSTHSFLSRHA-SSVRAILCLGPSPLTSDTLSLLPA--LEIVVGSTAGIDHVDLQECRRRG 93 (286)
Q Consensus 18 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~d~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d~id~~~~~~~g 93 (286)
.+.|.+. +++..+.........+.+.+.+ .++|+++++...++++++++++|+ ||+|++.++|+||||+++|+++|
T Consensus 30 ~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~g 109 (386)
T PLN02306 30 INLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYG 109 (386)
T ss_pred HHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCC
Confidence 4556553 5654332111111233344554 579999987667899999999996 69999999999999999999999
Q ss_pred eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCC-CCCCcccCCCCEEEEEcCChHHHHHHHHhc-cCC
Q 043239 94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHG-AYPLGSTLGGKRVGIVGLGSIGSEVAKRLV-PFG 171 (286)
Q Consensus 94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~-~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~-~~g 171 (286)
|.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.... ....|.++.|++|||||+|.||+.+|++++ +||
T Consensus 110 I~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fG 189 (386)
T PLN02306 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK 189 (386)
T ss_pred CEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999885321 122478899999999999999999999985 999
Q ss_pred CEEEEECCCCCCCC-------C------------cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEE
Q 043239 172 CSIAYTSRKKKPGV-------S------------YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII 232 (286)
Q Consensus 172 ~~V~~~~r~~~~~~-------~------------~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv 232 (286)
|+|.+||++..... + .....+++|++++||+|++|+|+|++|+++|+++.|++||+|++||
T Consensus 190 m~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI 269 (386)
T PLN02306 190 MNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLV 269 (386)
T ss_pred CEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE
Confidence 99999998764211 0 1123589999999999999999999999999999999999999999
Q ss_pred EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc--ccccccccCC
Q 043239 233 NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI--MLCCLHMLLW 286 (286)
Q Consensus 233 n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~--~~~tph~~~~ 286 (286)
|+|||++||++||++||++|+|.||+||||+.||++. .+|+.. .++|||+||+
T Consensus 270 N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~-~~L~~~pNVilTPHiag~ 324 (386)
T PLN02306 270 NASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMK-PGLADMKNAVVVPHIASA 324 (386)
T ss_pred ECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCc-chHhhCCCEEECCccccC
Confidence 9999999999999999999999999999999999754 446544 3999999985
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=1.4e-56 Score=436.26 Aligned_cols=265 Identities=24% Similarity=0.340 Sum_probs=230.7
Q ss_pred CCCchhhhCC-CcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcC
Q 043239 15 GCFNPPLSER-FTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRG 93 (286)
Q Consensus 15 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~g 93 (286)
+...+.+.+. +++.... . .+ .+.+.+.++++|++++++.+++++++++++|+||||+++|+|+||||+++|+++|
T Consensus 10 ~~~~~~l~~~~~~~~~~~-~--~~-~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~g 85 (525)
T TIGR01327 10 PDGIDILEDVGVEVDVQT-G--LS-REELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARG 85 (525)
T ss_pred HHHHHHHHhcCcEEEeCC-C--CC-HHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCC
Confidence 3344556554 4444322 1 12 3334566789999998877889999999999999999999999999999999999
Q ss_pred eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCE
Q 043239 94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS 173 (286)
Q Consensus 94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~ 173 (286)
|.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+. ...+.+|.|++|||||+|.||+.+|++|++|||+
T Consensus 86 I~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~ 163 (525)
T TIGR01327 86 ILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMK 163 (525)
T ss_pred CEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc--ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999853 2357899999999999999999999999999999
Q ss_pred EEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239 174 IAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249 (286)
Q Consensus 174 V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al 249 (286)
|++||++.... .+.....+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||++||
T Consensus 164 V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL 243 (525)
T TIGR01327 164 VLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEAL 243 (525)
T ss_pred EEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHH
Confidence 99999864321 12333458999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeEEEeeccCCCCCCcCCcccccc--cccccccCC
Q 043239 250 VRGSLVELVLMCLRTSLMCQRSCLHWIM--LCCLHMLLW 286 (286)
Q Consensus 250 ~~~~i~ga~lDv~~~e~~~~~~~l~~~~--~~tph~~~~ 286 (286)
++|+|+||+||||+.||++ +++|+..+ ++|||+|++
T Consensus 244 ~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvi~TPHia~~ 281 (525)
T TIGR01327 244 EEGHVRAAALDVFEKEPPT-DNPLFDLDNVIATPHLGAS 281 (525)
T ss_pred HcCCeeEEEEecCCCCCCC-CChhhcCCCeEECCCcccc
Confidence 9999999999999999964 67787666 999999985
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-56 Score=431.84 Aligned_cols=243 Identities=26% Similarity=0.386 Sum_probs=222.3
Q ss_pred HHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239 40 SFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL 119 (286)
Q Consensus 40 ~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~ 119 (286)
+.+.+.+.++|++++++.+++++++++++|+||||+++|+|+||||+++|+++||.|+|+|++++.+||||++++||++.
T Consensus 34 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~ 113 (526)
T PRK13581 34 EELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALA 113 (526)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHH
Confidence 33455678999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHH
Q 043239 120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSG 195 (286)
Q Consensus 120 R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e 195 (286)
|+++.+++.+++|.|.+. ...+.+|.|++|||||+|.||+.+|+++++|||+|++|||+.... .+.. ..+++|
T Consensus 114 R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~-~~~l~e 190 (526)
T PRK13581 114 RNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVE-LVSLDE 190 (526)
T ss_pred cCHHHHHHHHHcCCCCcc--CccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCE-EEcHHH
Confidence 999999999999999753 235789999999999999999999999999999999999864322 1233 348999
Q ss_pred hhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccc
Q 043239 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHW 275 (286)
Q Consensus 196 ~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~ 275 (286)
++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||+++|++|+|+||+||||+.||++ +++|+.
T Consensus 191 ll~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~ 269 (526)
T PRK13581 191 LLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFE 269 (526)
T ss_pred HHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-Cchhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999976 777877
Q ss_pred cc--cccccccCC
Q 043239 276 IM--LCCLHMLLW 286 (286)
Q Consensus 276 ~~--~~tph~~~~ 286 (286)
.+ ++|||+|++
T Consensus 270 ~~nvilTPHia~~ 282 (526)
T PRK13581 270 LPNVVVTPHLGAS 282 (526)
T ss_pred CCCeeEcCccccc
Confidence 66 999999985
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2e-55 Score=405.47 Aligned_cols=244 Identities=20% Similarity=0.326 Sum_probs=217.6
Q ss_pred HHhccCCceEEEEeCCCCCCHHHhccCC--CccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHH
Q 043239 42 LSRHASSVRAILCLGPSPLTSDTLSLLP--ALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVL 119 (286)
Q Consensus 42 ~~~~~~~~d~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~ 119 (286)
..+.++++|+++++..+++++++++++| +||+|++.++|+||||+++|+++||.|+|+|++++.+||||++++||++.
T Consensus 39 ~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~ 118 (330)
T PRK12480 39 TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLV 118 (330)
T ss_pred HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHH
Confidence 4567789999998766789999999998 89999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC-cccccCHHHhhc
Q 043239 120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-YPFYANVSGLAA 198 (286)
Q Consensus 120 R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-~~~~~~l~e~l~ 198 (286)
|+++.+++.+++|.|.... ...+++|+|++|||||+|.||+.+|++|+++|++|.+|+++...... .....+++++++
T Consensus 119 R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~ 197 (330)
T PRK12480 119 RRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIK 197 (330)
T ss_pred HhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHh
Confidence 9999999999999764221 12478899999999999999999999999999999999998754332 223458999999
Q ss_pred CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCc---------
Q 043239 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQ--------- 269 (286)
Q Consensus 199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~--------- 269 (286)
+||+|++|+|.+++|.++++++.+++||+|++|||+|||.++|+++|+++|++|+|+||+||||+.||+..
T Consensus 198 ~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~ 277 (330)
T PRK12480 198 DADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDI 277 (330)
T ss_pred cCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999621
Q ss_pred C----Ccccc--cccccccccCC
Q 043239 270 R----SCLHW--IMLCCLHMLLW 286 (286)
Q Consensus 270 ~----~~l~~--~~~~tph~~~~ 286 (286)
+ .+|+. +.++|||+|++
T Consensus 278 ~~~~~~~L~~~~nvilTPHia~~ 300 (330)
T PRK12480 278 DDKTLLELIEHERILVTPHIAFF 300 (330)
T ss_pred CchhhHHHhcCCCEEECCccccc
Confidence 1 23443 44999999986
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-56 Score=395.13 Aligned_cols=270 Identities=25% Similarity=0.320 Sum_probs=235.3
Q ss_pred CCCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhc-cCCCccEEEEcCCCCCcCChhHHh
Q 043239 12 GAPGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLS-LLPALEIVVGSTAGIDHVDLQECR 90 (286)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id~~~~~ 90 (286)
.+...-.+.+++.+..+++.... ..+ ++.+.++++|++++++.+++++++++ ...+||+|++.++|+||+|+++++
T Consensus 14 ~~~~~~~~~l~~~g~~v~~~~~~--~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAt 90 (406)
T KOG0068|consen 14 SLDQACIEILKDNGYQVEFKKNL--SLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAAT 90 (406)
T ss_pred ccchHHHHHHHhcCceEEEeccC--CHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHH
Confidence 34445667888877444443222 223 45567799999999999999999999 556899999999999999999999
Q ss_pred hcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC
Q 043239 91 RRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170 (286)
Q Consensus 91 ~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~ 170 (286)
++||.|.|+|.+|+.++||+++++++++.|++++....+++|+|.+. ..+|.++.|||+||+|+|+||+.+|++++.+
T Consensus 91 e~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~--~~~G~el~GKTLgvlG~GrIGseVA~r~k~~ 168 (406)
T KOG0068|consen 91 ENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRV--KYLGWELRGKTLGVLGLGRIGSEVAVRAKAM 168 (406)
T ss_pred hCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeec--ceeeeEEeccEEEEeecccchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999976 3479999999999999999999999999999
Q ss_pred CCEEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239 171 GCSIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247 (286)
Q Consensus 171 g~~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~ 247 (286)
||+|++||+-..... ......+++|+++.||+|++|+|++|+|+++++.+.|.+||+|..+||++||++||+.+|++
T Consensus 169 gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~ 248 (406)
T KOG0068|consen 169 GMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVR 248 (406)
T ss_pred CceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHH
Confidence 999999987443321 12246799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeEEEeeccCCCCCCc--CCcc--cccccccccccCC
Q 043239 248 FLVRGSLVELVLMCLRTSLMCQ--RSCL--HWIMLCCLHMLLW 286 (286)
Q Consensus 248 al~~~~i~ga~lDv~~~e~~~~--~~~l--~~~~~~tph~~~~ 286 (286)
||++|++.||++|||+.||+.. .+.| +++.+.|||+|++
T Consensus 249 Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgas 291 (406)
T KOG0068|consen 249 ALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGAS 291 (406)
T ss_pred HHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccc
Confidence 9999999999999999998754 3333 4555999999974
No 17
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.1e-54 Score=401.40 Aligned_cols=242 Identities=21% Similarity=0.265 Sum_probs=209.3
Q ss_pred CchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEE
Q 043239 17 FNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILV 96 (286)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v 96 (286)
..+.+.+.+++..+. ..+.+ . +.++++|++++++.+++++++++ .|+||||+++++|+||||+++++++||.|
T Consensus 12 ~~~~~~~~~ev~~~~-~~~~~-~----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v 84 (378)
T PRK15438 12 ARELFSRLGEVKAVP-GRPIP-V----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGF 84 (378)
T ss_pred HHHHHhhcCcEEEeC-CCCCC-H----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEE
Confidence 344555445665543 22221 2 22478999999888899999996 69999999999999999999999999999
Q ss_pred EecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEE
Q 043239 97 TNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY 176 (286)
Q Consensus 97 ~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~ 176 (286)
+|+|++|+.+||||+++++|++.|+. +.+|.|++|||||+|+||+.+|+++++|||+|.+
T Consensus 85 ~napg~na~aVAE~~~~~lL~l~r~~--------------------g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 85 SAAPGCNAIAVVEYVFSSLLMLAERD--------------------GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL 144 (378)
T ss_pred EECCCcCchHHHHHHHHHHHHHhccC--------------------CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999998861 2368999999999999999999999999999999
Q ss_pred ECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChh----hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 177 TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 177 ~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~----t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
||+..........+.++++++++||+|++|+|+|++ |.++++++.|++||+|++|||+|||++||++||+++|++|
T Consensus 145 ~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 145 CDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred ECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 997544322222467999999999999999999996 9999999999999999999999999999999999999999
Q ss_pred CeeEEEeeccCCCCCCcCCcccccc-cccccccCC
Q 043239 253 SLVELVLMCLRTSLMCQRSCLHWIM-LCCLHMLLW 286 (286)
Q Consensus 253 ~i~ga~lDv~~~e~~~~~~~l~~~~-~~tph~~~~ 286 (286)
++.+|+||||+.||.+ +.+++.+. |+|||||||
T Consensus 225 ~~~ga~LDV~e~EP~~-~~~Ll~~~~i~TPHiAg~ 258 (378)
T PRK15438 225 QKLSVVLDVWEGEPEL-NVELLKKVDIGTPHIAGY 258 (378)
T ss_pred CCcEEEEecCCCCCCC-chhhhhcCCEECCccCcC
Confidence 9999999999999964 44577776 999999997
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=8.4e-54 Score=395.50 Aligned_cols=243 Identities=19% Similarity=0.285 Sum_probs=216.6
Q ss_pred HhccCCceEEEEeCCCCCCHHHhccCCC--ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHh
Q 043239 43 SRHASSVRAILCLGPSPLTSDTLSLLPA--LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLR 120 (286)
Q Consensus 43 ~~~~~~~d~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R 120 (286)
.+.+.++|+++++..+++++++++++|+ ||+|+++|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R 119 (332)
T PRK08605 40 VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVR 119 (332)
T ss_pred HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhc
Confidence 4566899999987778999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHh-ccCCCEEEEECCCCCCCC--CcccccCHHHhh
Q 043239 121 RVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL-VPFGCSIAYTSRKKKPGV--SYPFYANVSGLA 197 (286)
Q Consensus 121 ~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l-~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l 197 (286)
++..+++.+++|.|.... ...+++|.|++|||||+|.||+++|++| +++|++|++||++..... ......++++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell 198 (332)
T PRK08605 120 HFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAV 198 (332)
T ss_pred ChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHH
Confidence 999999999999874321 1247899999999999999999999999 789999999998765422 222345899999
Q ss_pred cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC--CCcCC----
Q 043239 198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL--MCQRS---- 271 (286)
Q Consensus 198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~--~~~~~---- 271 (286)
++||+|++|+|.++.|+++++++.+++||+|++|||+|||.++|+++|+++|++|+|+||+||||+.|| ++.++
T Consensus 199 ~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~ 278 (332)
T PRK08605 199 EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQT 278 (332)
T ss_pred HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 34443
Q ss_pred -------ccc--ccccccccccCC
Q 043239 272 -------CLH--WIMLCCLHMLLW 286 (286)
Q Consensus 272 -------~l~--~~~~~tph~~~~ 286 (286)
+|+ .+.++|||+|+|
T Consensus 279 ~~~~~~~~L~~~~nvilTPHia~~ 302 (332)
T PRK08605 279 INDPLLESLINREDVILTPHIAFY 302 (332)
T ss_pred ccchhhHHHhcCCCEEECCccccc
Confidence 243 344999999986
No 19
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=3.2e-53 Score=395.64 Aligned_cols=222 Identities=21% Similarity=0.326 Sum_probs=200.5
Q ss_pred hccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcch
Q 043239 44 RHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVS 123 (286)
Q Consensus 44 ~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~ 123 (286)
+.++++|++++++.+++++++++. ++||||+++++|+||||+++++++||.|+|+||+|+.+||||+++++|++.|+
T Consensus 33 ~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-- 109 (381)
T PRK00257 33 AAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-- 109 (381)
T ss_pred HHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--
Confidence 345799999998888999999984 89999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEE
Q 043239 124 SIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVL 203 (286)
Q Consensus 124 ~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV 203 (286)
.+.++.|++|||||+|+||+.+|++++++|++|++||+......+...+.++++++++||+|
T Consensus 110 ------------------~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV 171 (381)
T PRK00257 110 ------------------EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVI 171 (381)
T ss_pred ------------------cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEE
Confidence 23469999999999999999999999999999999998654333333467899999999999
Q ss_pred EEeccCCh----hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccccc
Q 043239 204 IVCCALTE----ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLC 279 (286)
Q Consensus 204 ~~~lp~~~----~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~~~ 279 (286)
++|+|+|+ +|+++|+++.|++||+|++|||+|||++||++||+++|++|++.+|+||||+.||.+....+..+.++
T Consensus 172 ~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~ 251 (381)
T PRK00257 172 SLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIA 251 (381)
T ss_pred EEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEE
Confidence 99999998 59999999999999999999999999999999999999999999999999999997544434445599
Q ss_pred cccccCC
Q 043239 280 CLHMLLW 286 (286)
Q Consensus 280 tph~~~~ 286 (286)
|||||||
T Consensus 252 TPHiAg~ 258 (381)
T PRK00257 252 TPHIAGY 258 (381)
T ss_pred cCccccC
Confidence 9999997
No 20
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=9e-53 Score=383.04 Aligned_cols=225 Identities=24% Similarity=0.315 Sum_probs=201.6
Q ss_pred CCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHH
Q 043239 47 SSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSID 126 (286)
Q Consensus 47 ~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~ 126 (286)
.++|++++.. . +..+++||||++.++|+||||+++|++++|.++|. +.++.+||||++++||++.|+++.++
T Consensus 33 ~~a~~~~~~~-~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~ 104 (303)
T PRK06436 33 YDAEAILIKG-R------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN 104 (303)
T ss_pred CCCCEEEecC-C------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence 4777876533 1 23468999999999999999999999988888775 78899999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcc-cccCHHHhhcCCCEEEE
Q 043239 127 RFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP-FYANVSGLAADSDVLIV 205 (286)
Q Consensus 127 ~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~-~~~~l~e~l~~aDiV~~ 205 (286)
+.+++|.|... .+++|.|++|||||+|+||+.+|+++++||++|++|+|+.... +.. ...++++++++||+|++
T Consensus 105 ~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~ 179 (303)
T PRK06436 105 YNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLI 179 (303)
T ss_pred HHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEE
Confidence 99999999853 4578999999999999999999999999999999999976442 222 25689999999999999
Q ss_pred eccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccccccccccC
Q 043239 206 CCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIMLCCLHMLL 285 (286)
Q Consensus 206 ~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~~~tph~~~ 285 (286)
|+|++++|+++++++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||+.||++.++ ...+.++|||++|
T Consensus 180 ~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~-~~~nviiTPHi~g 258 (303)
T PRK06436 180 SLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET-NPDNVILSPHVAG 258 (303)
T ss_pred CCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC-CCCCEEECCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999988776 4567799999875
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=9.4e-53 Score=384.80 Aligned_cols=232 Identities=21% Similarity=0.255 Sum_probs=206.5
Q ss_pred CCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhH-----HhhcCeEEEecCC-CCCcChHHHHHHHHHHHHh
Q 043239 47 SSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQE-----CRRRGILVTNAGN-AFSEDGADYVVGLLVDVLR 120 (286)
Q Consensus 47 ~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~~l~~~L~~~R 120 (286)
+++|+++++.. +.+.++ .|+||||++.|+|+|++|... +..+||.|+|+++ .++.+||||++++||++.|
T Consensus 37 ~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r 112 (312)
T PRK15469 37 DPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR 112 (312)
T ss_pred ccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence 68899998652 567776 589999999999999998322 4458999999864 6899999999999999999
Q ss_pred cchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc---ccccCHHHhh
Q 043239 121 RVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY---PFYANVSGLA 197 (286)
Q Consensus 121 ~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~---~~~~~l~e~l 197 (286)
+++.+...++++.|... .+.++.|+||||||+|.||+.+|++|++|||+|.+|+++.+...+. ....++++++
T Consensus 113 ~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 113 RFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred ChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 99999999999999742 3457999999999999999999999999999999999876553322 2346899999
Q ss_pred cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc
Q 043239 198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM 277 (286)
Q Consensus 198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~ 277 (286)
++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||+++|++||++|+|+||+||||+.||++.+++|+..+
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred --cccccccCC
Q 043239 278 --LCCLHMLLW 286 (286)
Q Consensus 278 --~~tph~~~~ 286 (286)
++|||+||+
T Consensus 269 nvi~TPHiag~ 279 (312)
T PRK15469 269 RVAITPHVAAV 279 (312)
T ss_pred CeEECCcCCCC
Confidence 999999985
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.6e-51 Score=373.74 Aligned_cols=235 Identities=40% Similarity=0.637 Sum_probs=210.7
Q ss_pred eEEEEeCCCCCCHHHhccC-CCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHH
Q 043239 50 RAILCLGPSPLTSDTLSLL-PALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRF 128 (286)
Q Consensus 50 d~i~~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~ 128 (286)
.++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|+.+..+|||++++++|.++|++..+++.
T Consensus 63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~ 142 (336)
T KOG0069|consen 63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM 142 (336)
T ss_pred eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3444444556677777765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC----cccccCHHHhhcCCCEEE
Q 043239 129 VRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS----YPFYANVSGLAADSDVLI 204 (286)
Q Consensus 129 ~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~----~~~~~~l~e~l~~aDiV~ 204 (286)
+++|.|.....++.+..+.||||||+|+|+||+.+|++|++||+.+.|++|+..+... .....++++++++||+|+
T Consensus 143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv 222 (336)
T KOG0069|consen 143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV 222 (336)
T ss_pred hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence 9999996556667889999999999999999999999999999889999997765432 123569999999999999
Q ss_pred EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc--cccccc
Q 043239 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI--MLCCLH 282 (286)
Q Consensus 205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~--~~~tph 282 (286)
+|||+|++|+++||++.+++||+|+++||++||.++|++++++||++|+|.+++||||+.|| +.+.++..+ .++|||
T Consensus 223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PH 301 (336)
T KOG0069|consen 223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPH 301 (336)
T ss_pred EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999 555545444 499999
Q ss_pred ccC
Q 043239 283 MLL 285 (286)
Q Consensus 283 ~~~ 285 (286)
||+
T Consensus 302 igs 304 (336)
T KOG0069|consen 302 IGS 304 (336)
T ss_pred ccc
Confidence 986
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=8.3e-44 Score=301.76 Aligned_cols=172 Identities=31% Similarity=0.470 Sum_probs=150.3
Q ss_pred HHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----Cc
Q 043239 112 VGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SY 187 (286)
Q Consensus 112 l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~ 187 (286)
+++||++.|+++.+++.++++.|. ......++++.|++|||||+|.||+.+|+++++||++|++|+|+..... ..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~-~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWA-SRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHH-HHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCC-CCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence 689999999999999999999991 1112468899999999999999999999999999999999999887532 12
Q ss_pred ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC
Q 043239 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM 267 (286)
Q Consensus 188 ~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~ 267 (286)
....+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||+.||+
T Consensus 80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL 159 (178)
T ss_dssp EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence 24679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcccccc--ccccccc
Q 043239 268 CQRSCLHWIM--LCCLHML 284 (286)
Q Consensus 268 ~~~~~l~~~~--~~tph~~ 284 (286)
+.+++|+..+ ++|||+|
T Consensus 160 ~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 160 PADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp STTHHHHTSTTEEEESS-T
T ss_pred CCCChHHcCCCEEEeCccC
Confidence 9998888765 9999997
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.94 E-value=9e-27 Score=210.38 Aligned_cols=237 Identities=22% Similarity=0.324 Sum_probs=198.8
Q ss_pred cCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHH
Q 043239 46 ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSI 125 (286)
Q Consensus 46 ~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~ 125 (286)
++++-.-+.+....++++.+++++.||++...+.|+|++|+.++.+.||.|||.|+.....+|.-++..+|.++|+-.-.
T Consensus 71 Lneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~ 150 (435)
T KOG0067|consen 71 LNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWL 150 (435)
T ss_pred HHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchh
Confidence 33443445556678999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHcCCCCCCCC----CC-CcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC----CCCcccccCHHHh
Q 043239 126 DRFVRNGLWPDHGA----YP-LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP----GVSYPFYANVSGL 196 (286)
Q Consensus 126 ~~~~~~~~w~~~~~----~~-~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~----~~~~~~~~~l~e~ 196 (286)
....++|.|...-. .. ....+.|.+.|++|+|+.|++++.+.++||+.|..||+.... ..+.....++.++
T Consensus 151 cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~ 230 (435)
T KOG0067|consen 151 CQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDL 230 (435)
T ss_pred hhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchh
Confidence 88888888764310 11 234688999999999999999999999999999999976543 2345556679999
Q ss_pred hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI 276 (286)
Q Consensus 197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~ 276 (286)
+.++|.+++++.+.+.+.++|+.-.+.+|+.|+.++|++||.++|+++|.++|+.|++++++ .......+-..-.+
T Consensus 231 ~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa----~~~~~~~~l~d~pn 306 (435)
T KOG0067|consen 231 LYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA----PRSFKQGPLKDAPN 306 (435)
T ss_pred hhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc----CcccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988 11111111112234
Q ss_pred ccccccccCC
Q 043239 277 MLCCLHMLLW 286 (286)
Q Consensus 277 ~~~tph~~~~ 286 (286)
.|||||.++|
T Consensus 307 ~ic~~~ta~~ 316 (435)
T KOG0067|consen 307 LICTPHTAWY 316 (435)
T ss_pred CCCCcccchh
Confidence 4999999876
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.83 E-value=2.5e-20 Score=177.15 Aligned_cols=169 Identities=16% Similarity=0.246 Sum_probs=136.0
Q ss_pred cCCCCCcCC-hhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc
Q 043239 77 STAGIDHVD-LQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG 155 (286)
Q Consensus 77 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG 155 (286)
+++|+..+- .......+|+|+|+|+.+..+++|+++++++++... .++.+ +..++|++++|+|
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~------~~R~~----------~~~LaGKtVgVIG 261 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDG------IFRAT----------DVMIAGKTVVVCG 261 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHH------HHHhc----------CCCcCCCEEEEEC
Confidence 466766552 222334689999999999999999999999998843 33333 3468999999999
Q ss_pred CChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239 156 LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230 (286)
Q Consensus 156 ~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i 230 (286)
+|.||+.+|++++++|++|+++++++... .++ ...++++++++||+|++|. .+.++|+++.|+.||+|++
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAi 336 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAI 336 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcE
Confidence 99999999999999999999998765443 122 2457999999999999984 3688999999999999999
Q ss_pred EEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcc
Q 043239 231 IINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCL 273 (286)
Q Consensus 231 lvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l 273 (286)
++|+||+ |.+.+.++|+.+. ++|+++.+|......+
T Consensus 337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~~~~~ 372 (476)
T PTZ00075 337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVDRYTF 372 (476)
T ss_pred EEEcCCC---chHHhHHHHHhcC----CceeecccCCCCeEEe
Confidence 9999999 7888889988754 6899998876554433
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.83 E-value=2e-20 Score=169.63 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=143.9
Q ss_pred ccCCceEEEEe----------------CCCCCCHHHhccCCCccEEEEcCCCCCcCChh-HHhhcCeEEE------ecCC
Q 043239 45 HASSVRAILCL----------------GPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQ-ECRRRGILVT------NAGN 101 (286)
Q Consensus 45 ~~~~~d~i~~~----------------~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~ 101 (286)
.++++|+++.. ....+++++++++| .++...+|+++.|++ .|+++||+|+ |++.
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 35678888763 12336788998888 377788999999998 9999999999 8888
Q ss_pred CCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC
Q 043239 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK 181 (286)
Q Consensus 102 ~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~ 181 (286)
+|+.++||.++.+++.. .+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+.
T Consensus 128 ~n~~~~Ae~ai~~al~~-----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEH-----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred EccHhHHHHHHHHHHHh-----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 99999999999877742 1236889999999999999999999999999999999987
Q ss_pred CCCC-----Ccc--cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHhCC
Q 043239 182 KPGV-----SYP--FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGA-LIDEKELVHFLVRGS 253 (286)
Q Consensus 182 ~~~~-----~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~-~vd~~al~~al~~~~ 253 (286)
++.. +.. ...++.++++++|+|++|+|.. +++++.++.|++++++||++... -+|. ++.++..
T Consensus 185 ~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G 255 (287)
T TIGR02853 185 ADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRG 255 (287)
T ss_pred HHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCC
Confidence 5421 211 2346788899999999999853 67888999999999999998643 3443 4556667
Q ss_pred eeEEEeecc
Q 043239 254 LVELVLMCL 262 (286)
Q Consensus 254 i~ga~lDv~ 262 (286)
++....+-.
T Consensus 256 ~~a~~~~gl 264 (287)
T TIGR02853 256 IKALLAPGL 264 (287)
T ss_pred CEEEEeCCC
Confidence 665554433
No 27
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.67 E-value=4.7e-16 Score=141.82 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=139.5
Q ss_pred HhccCCceEEEEeCC----------------CCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhcCeEEEecCCC----
Q 043239 43 SRHASSVRAILCLGP----------------SPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNA---- 102 (286)
Q Consensus 43 ~~~~~~~d~i~~~~~----------------~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~---- 102 (286)
.+.++++|+++..-+ ..++++.++.+|++..+. .|.+.++++ +.+.++||++.+....
T Consensus 50 ~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 50 EEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 345678999986311 123688999999997554 588888987 7889999999987754
Q ss_pred --CCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCC
Q 043239 103 --FSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK 180 (286)
Q Consensus 103 --~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~ 180 (286)
++.++||.++.+.+. + .+..+.|++++|+|+|.+|+.+++.|+.+|++|++++|+
T Consensus 128 ~~ns~~~aegav~~a~~---~--------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIE---H--------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred hhccHhHHHHHHHHHHH---h--------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 889999997765432 1 123478999999999999999999999999999999998
Q ss_pred CCCC-----CCcc--cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCC--CcccCHHHHHHHHHh
Q 043239 181 KKPG-----VSYP--FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGR--GALIDEKELVHFLVR 251 (286)
Q Consensus 181 ~~~~-----~~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~sr--g~~vd~~al~~al~~ 251 (286)
.+.. .+.. ...++.+.++++|+|++++|. .+++++.++.|++++++||++. |. +|. ++.++
T Consensus 185 ~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~pgg-td~----~~a~~ 254 (296)
T PRK08306 185 SAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASKPGG-TDF----EYAEK 254 (296)
T ss_pred HHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccCCCC-cCe----eehhh
Confidence 6532 1222 234677889999999999873 4678899999999999999974 34 443 34455
Q ss_pred CCeeEEEeeccCC
Q 043239 252 GSLVELVLMCLRT 264 (286)
Q Consensus 252 ~~i~ga~lDv~~~ 264 (286)
.++...+.+-+..
T Consensus 255 ~Gv~~~~~~~lpg 267 (296)
T PRK08306 255 RGIKALLAPGLPG 267 (296)
T ss_pred CCeEEEEECCCCc
Confidence 5665554444433
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.66 E-value=3.7e-16 Score=140.49 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=117.6
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhccc--HH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KD 220 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~ 220 (286)
++||+||+|.||.+||++|.+.|+.|.+|||++++. .+.....+..|+.+++|+|++|+|+.++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 489999999999999999999999999999998872 2566678899999999999999999999999885 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM 277 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~ 277 (286)
.++.+|+|.+|||+|+.++...+.+.++++++.+...-..|....+...+..|-.+.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimv 137 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMV 137 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEe
Confidence 899999999999999999999999999999999999999999999988888776654
No 29
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.66 E-value=1e-16 Score=129.34 Aligned_cols=95 Identities=27% Similarity=0.346 Sum_probs=76.8
Q ss_pred CCCCCchhhhCCCcEEecCCCCCCCchHHHHhccCCceEEEEeCCCCCCHHHhccCCCccEEEEcCCCCCcCChhHHhhc
Q 043239 13 APGCFNPPLSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRR 92 (286)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~ 92 (286)
+++...+.|++.+++..+. . ...+.+.+.++++|+++++..+++++++++.+|+||||++.|+|+|+||+++++++
T Consensus 7 ~~~~~~~~l~~~~~v~~~~---~-~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~ 82 (133)
T PF00389_consen 7 LPDEEIERLEEGFEVEFCD---S-PSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKER 82 (133)
T ss_dssp -SHHHHHHHHHTSEEEEES---S-SSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHT
T ss_pred CCHHHHHHHHCCceEEEeC---C-CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHHHhhC
Confidence 3455667788767555443 2 22445566778999999987777999999999999999999999999999999999
Q ss_pred CeEEEecCCCCCcChHHHH
Q 043239 93 GILVTNAGNAFSEDGADYV 111 (286)
Q Consensus 93 gI~v~n~~~~~~~~vAE~~ 111 (286)
||.|+|+|++++.+||||+
T Consensus 83 gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 83 GIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TSEEEE-TTTTHHHHHHHH
T ss_pred eEEEEEeCCcCCcchhccc
Confidence 9999999999999999999
No 30
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.60 E-value=4e-16 Score=130.26 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=100.7
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc-HHHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN-KDVM 222 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~-~~~l 222 (286)
++|||||+|.||..+|++|.+.|++|++|||++++.. +.....++.|++++||+|++|+|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 5899999999999999999999999999999876532 455678999999999999999998888887763 2278
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcc
Q 043239 223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCL 273 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l 273 (286)
+.+++|.+|||+++.++-....+.+.+.+.++...-..|+...+......+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l 132 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTL 132 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccce
Confidence 889999999999999999999999999999999888888876655444433
No 31
>PLN02494 adenosylhomocysteinase
Probab=99.59 E-value=3e-15 Score=142.35 Aligned_cols=116 Identities=17% Similarity=0.266 Sum_probs=101.0
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
.+.|++++|+|+|.||+.+|++++++|++|+++++++.+.. ++. ..+++++++.+|+|+.+ ..+.+++++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence 47899999999999999999999999999999988775421 332 34789999999999874 346888999
Q ss_pred HHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHhCCeeEEEeeccCCCC
Q 043239 220 DVMTALGKEGVIINVGR-GALIDEKELVHF--LVRGSLVELVLMCLRTSL 266 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~sr-g~~vd~~al~~a--l~~~~i~ga~lDv~~~e~ 266 (286)
+.|+.||+|++++|+|| +..||..+|.++ ++.+.++ +.+|+|+.|.
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 9999998764
No 32
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.51 E-value=7.8e-14 Score=131.54 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=99.9
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
.+.|++|+|+|+|.||+.+|++++++|++|+++++++.+.. ++ ...+++++++.+|+|+.+.. +.++++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 47899999999999999999999999999999987765421 33 24467889999999987643 6778888
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 220 DVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
+.+..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-+
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~ 313 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILK 313 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeC
Confidence 99999999999999999998 99999999998888778899998743
No 33
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.50 E-value=5.1e-14 Score=128.06 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=75.1
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
..|+|++|||||+|.||+++|++|+++|++|.++++...... ++. ..++++++++||+|++++|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 458999999999999999999999999999999976543311 332 45899999999999999997 67799999
Q ss_pred HHHHhcCCCCcEEEE
Q 043239 219 KDVMTALGKEGVIIN 233 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn 233 (286)
++.+++||+|++++-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999997753
No 34
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.49 E-value=8.9e-14 Score=134.34 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=111.1
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccc---cccCHHHhhcC---CCEEEEeccCChhh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYP---FYANVSGLAAD---SDVLIVCCALTEET 213 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~---~~~~l~e~l~~---aDiV~~~lp~~~~t 213 (286)
.+||+||+|.||+.||++|...|++|.+|||+.++.. +.. .+.+++|+++. +|+|++|+|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 3699999999999999999999999999999876532 222 45788888876 99999999999999
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccccc
Q 043239 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWIM 277 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~~ 277 (286)
+.++ ...++.+++|.++||+|+...-++..+.+.+++.++......|+..++.+..++ ..++
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~ 148 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMP 148 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEe
Confidence 9888 568899999999999999999999999999999999999999999998877775 4443
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.47 E-value=1.2e-13 Score=125.72 Aligned_cols=118 Identities=13% Similarity=0.183 Sum_probs=97.9
Q ss_pred EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc-c-HHHH
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI-N-KDVM 222 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i-~-~~~l 222 (286)
+|||||+|.||..+|++|...|++|.+|+|+.++.. +.....+..+++++||+|++|+|..+.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 489999999999999999999999999999875432 33345688899999999999999887777665 2 3467
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCC
Q 043239 223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLM 267 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~ 267 (286)
+.+++|.++||+++..+.+.+++.+.++++.+......|+..++.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~ 125 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIG 125 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHH
Confidence 788999999999999999999999999998877666666655543
No 36
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.46 E-value=1.8e-13 Score=124.84 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=105.6
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV 221 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~ 221 (286)
++|||||+|.||.++|+.|...|++|++|||++++.. +.....+..+++++||+|++|+|.....+.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 3799999999999999999999999999999876532 334567888999999999999998777777764 246
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccc
Q 043239 222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLH 274 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~ 274 (286)
++.+++|.++||+|++.+...+.+.+.+.++++......|....+...++.+.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~ 134 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLL 134 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEE
Confidence 77889999999999999999999999999999988777787776555555443
No 37
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.45 E-value=2.8e-13 Score=123.75 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=102.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcC---CCEEEEeccCChhhhhcccHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAAD---SDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~~i~~~ 220 (286)
++|||||+|.||..+|++|...|++|++|||+.++.. +.....++++++++ +|+|++|+|..+.++.++ .+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence 4799999999999999999999999999999865422 34456788888876 699999999887888877 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS 271 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~ 271 (286)
.++.+++|.++||+|+..+.+...+.+.+.+.++......|+...+....+
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g 130 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNG 130 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcC
Confidence 778899999999999999999999999999988887666688776554444
No 38
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.45 E-value=2.2e-13 Score=124.04 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=101.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDV 221 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~ 221 (286)
++|||||+|.||+.+|+.+...|++|.+|||+.++.. +.....++++++++||+|++|+|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5899999999999999999999999999999875432 333456889999999999999998887777763 346
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcC
Q 043239 222 MTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQR 270 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~ 270 (286)
++.+++|.+|||+++..+...+++.+.+.+.++...--.|+..++....
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~ 131 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAID 131 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhh
Confidence 7889999999999999998999999999988887766677776654333
No 39
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.39 E-value=1e-12 Score=120.25 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=102.0
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcC---CCEEEEeccCChhhhhcccHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAAD---SDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~~i~~~ 220 (286)
++|||||+|.||+.+|++|...|++|.+|||++++.. +.....+++++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 4799999999999999999999999999999876532 34445688888875 699999999877777776 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS 271 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~ 271 (286)
.++.+++|.++||++++.......+.+.+++.++......|....+....+
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g 130 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERG 130 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcC
Confidence 778899999999999999999999999999999987777777776544444
No 40
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.39 E-value=1e-12 Score=119.79 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=104.5
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH--HHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK--DVM 222 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~--~~l 222 (286)
++|||||+|.||..||++|...|++|.+|+++++.. .+.....+..+++++||+|++|+|..++.+.++.. ..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 379999999999999999999999999999876421 13445678889999999999999988787777632 357
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239 223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI 276 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~ 276 (286)
+.+++|.++||+|+..+-....+.+.+.+.++......|...++....+.+..+
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIM 134 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEE
Confidence 778999999999999999999999999998888777778777765555544433
No 41
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.38 E-value=1e-12 Score=117.10 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=114.8
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH--
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK-- 219 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~-- 219 (286)
+.++||+||+|.||..|+.+|.+.|++|++|||+..+.. +.....++.|+.+.||+|+.++|.....+.++..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 578999999999999999999999999999999988764 5667889999999999999999998888887743
Q ss_pred HHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCccccc
Q 043239 220 DVMTALGKEGVI-INVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHWI 276 (286)
Q Consensus 220 ~~l~~mk~g~il-vn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~~ 276 (286)
..++..++|... ||.++-++.-...+.++++..+.+..-..|....+.++.+.|-.+
T Consensus 114 Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~Ltim 171 (327)
T KOG0409|consen 114 GVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIM 171 (327)
T ss_pred cceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEE
Confidence 367878888777 999999999999999999999999999999988888888766554
No 42
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.35 E-value=2.5e-12 Score=124.01 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=107.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------C--cccccCHHHhhc---CCCEEEEeccCChhhh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------S--YPFYANVSGLAA---DSDVLIVCCALTEETH 214 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~--~~~~~~l~e~l~---~aDiV~~~lp~~~~t~ 214 (286)
.+|||||+|.||++||++|...|++|.+|||+.++.. + .....+++|+++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 4799999999999999999999999999999887521 2 224678989886 5899999999999999
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCc
Q 043239 215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSC 272 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~ 272 (286)
.++ ++.++.+++|.++||++.+...++..+.+.+.+.++.+....|+..++.+..++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC
Confidence 888 468888999999999999999999999999999999999999999988766664
No 43
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.34 E-value=4.2e-12 Score=120.53 Aligned_cols=151 Identities=18% Similarity=0.280 Sum_probs=110.0
Q ss_pred EcCCCCCcC-ChhHHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEE
Q 043239 76 GSTAGIDHV-DLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIV 154 (286)
Q Consensus 76 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIi 154 (286)
-+++|+..+ ......+.+++|.|++..+..+.-|...+.-.+....+.+ . .+..+.|++++|+
T Consensus 155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r------a----------t~~~l~Gk~VlVi 218 (425)
T PRK05476 155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKR------A----------TNVLIAGKVVVVA 218 (425)
T ss_pred cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHH------h----------ccCCCCCCEEEEE
Confidence 356776655 2233345789999999887777555333322222211111 0 1234789999999
Q ss_pred cCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239 155 GLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229 (286)
Q Consensus 155 G~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ 229 (286)
|+|.||+.+|++++++|++|+++++++.+.. ++. ..+++++++.+|+|+.+.. +.++++.+.+..||+|+
T Consensus 219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~Ga 293 (425)
T PRK05476 219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGA 293 (425)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999998775532 222 4578899999999988753 56688889999999999
Q ss_pred EEEEcCCCcc-cCHHHHHH
Q 043239 230 VIINVGRGAL-IDEKELVH 247 (286)
Q Consensus 230 ilvn~srg~~-vd~~al~~ 247 (286)
+++|+|+... +|..+|.+
T Consensus 294 iliNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 294 ILANIGHFDNEIDVAALEE 312 (425)
T ss_pred EEEEcCCCCCccChHHHhh
Confidence 9999999876 78887765
No 44
>PLN02858 fructose-bisphosphate aldolase
Probab=99.32 E-value=3.9e-12 Score=136.00 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=114.2
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc--cH
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI--NK 219 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i--~~ 219 (286)
+..+||+||+|.||..||++|...|++|.+|||++++.. +...+.++.|+.++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 356899999999999999999999999999999877543 45567899999999999999999999988887 34
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC--eeEEEeeccCCCCCCcCCcccccc
Q 043239 220 DVMTALGKEGVIINVGRGALIDEKELVHFLVRGS--LVELVLMCLRTSLMCQRSCLHWIM 277 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~--i~ga~lDv~~~e~~~~~~~l~~~~ 277 (286)
..++.+++|.++||+|+.++-..+.+.+.+.+.+ +...-..|+...+.+..+.|..+.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imv 142 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIA 142 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEE
Confidence 5788899999999999999999999999999988 888888899888777777666544
No 45
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.31 E-value=9.5e-12 Score=113.69 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=98.8
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHh---hcCCCEEEEeccCChhhhhcccHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGL---AADSDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~~i~~~ 220 (286)
++|||||+|.||..+|+.|...|++|.+|||+.++.. +.....+++++ +.++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 4799999999999999999999999999999876532 22233455554 45789999999976 777777 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS 271 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~ 271 (286)
..+.+++|.++||++.+...+...+.+.+++.++......|+...+....+
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G 129 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG 129 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC
Confidence 778899999999999999999999999999998887777777766554444
No 46
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.29 E-value=5.9e-12 Score=114.43 Aligned_cols=123 Identities=13% Similarity=0.128 Sum_probs=101.3
Q ss_pred EEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc--HHHHhcC
Q 043239 153 IVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN--KDVMTAL 225 (286)
Q Consensus 153 IiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~--~~~l~~m 225 (286)
|||+|.||.++|++|...|++|.+|||+.++.. +.....++.+++++||+|++|+|..+..+.++. ...++.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999999876532 334456889999999999999998777777763 4567788
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCcccc
Q 043239 226 GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSCLHW 275 (286)
Q Consensus 226 k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~l~~ 275 (286)
++|.++||++..++-..+.+.+.+.+.++......|+..++....+.+..
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~ 130 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTF 130 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEE
Confidence 99999999998888888999999998888877777887776666555443
No 47
>PLN02858 fructose-bisphosphate aldolase
Probab=99.26 E-value=1.7e-11 Score=131.12 Aligned_cols=130 Identities=18% Similarity=0.122 Sum_probs=111.2
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc--cHH
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI--NKD 220 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i--~~~ 220 (286)
.++|||||+|.||..||++|...|++|.+|||+.++.. +.....++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999999876532 33346789999999999999999888888887 345
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh--CCeeEEEeeccCCCCCCcCCcccccc
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVR--GSLVELVLMCLRTSLMCQRSCLHWIM 277 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~--~~i~ga~lDv~~~e~~~~~~~l~~~~ 277 (286)
.++.+++|.++||+|+.++-..+.+.+.+.+ .++......|....+.+..+.+..+.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imv 462 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMA 462 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEE
Confidence 7888999999999999999999999999998 88888888888888777776665543
No 48
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.26 E-value=1.3e-11 Score=119.05 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=103.6
Q ss_pred EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------C--cccccCHHHhh---cCCCEEEEeccCChhhhhc
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------S--YPFYANVSGLA---ADSDVLIVCCALTEETHHM 216 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~--~~~~~~l~e~l---~~aDiV~~~lp~~~~t~~~ 216 (286)
.|||||+|.||..||++|...|++|.+|||++++.. + .....+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999999999999876432 1 22345777765 4689999999988888888
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCc
Q 043239 217 INKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSC 272 (286)
Q Consensus 217 i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~ 272 (286)
+ .+.++.+++|.++||+++....++..+.+.+.+..+......|+..++.+..++
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~ 135 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP 135 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC
Confidence 7 467788999999999999999999999999999999999999999887666553
No 49
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.26 E-value=1.1e-11 Score=102.55 Aligned_cols=99 Identities=20% Similarity=0.377 Sum_probs=71.2
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
..+.||++.|+|||.+|+.+|+.|+++|.+|.+++..+-+. .++. ..+++++++++|+++.+.. ...++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence 35899999999999999999999999999999999876542 2444 4589999999999988754 467889
Q ss_pred HHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 043239 219 KDVMTALGKEGVIINVGRGAL-IDEKELVH 247 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~srg~~-vd~~al~~ 247 (286)
.+.|.+||+|+++.|++.-.. +|-+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999976543 55555444
No 50
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.17 E-value=6.1e-11 Score=109.16 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=73.9
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
..++|++|||||+|+||+++|+.|+.+|++|.+++++..+. .++. ..+..+++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 35899999999999999999999999999998877654322 1333 34889999999999999997655 6777
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 043239 218 NKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg 237 (286)
+++.++.|++|++| ..+.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 67888999999987 55555
No 51
>PLN02712 arogenate dehydrogenase
Probab=99.15 E-value=1.3e-10 Score=116.65 Aligned_cols=108 Identities=17% Similarity=0.335 Sum_probs=84.8
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhhc-CCCEEEEeccCChhhhhcc
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLAA-DSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i 217 (286)
+.++.+++|||||+|.||+.+|+.|+++|++|.+|+|+.... .+.....++++++. ++|+|++|+|. ..+..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence 567899999999999999999999999999999999975421 13334567888776 59999999994 6777777
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
.+-....||+|++++|++.++-...+.+.+.+..
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 6544557999999999999885555555555544
No 52
>PLN02256 arogenate dehydrogenase
Probab=99.07 E-value=6.2e-10 Score=101.95 Aligned_cols=104 Identities=21% Similarity=0.391 Sum_probs=79.6
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhh-cCCCEEEEeccCChhhhhcccHHH
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLA-ADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
++++|+|||+|.||+.+|+.|++.|++|.+++++.... .+.....++++++ .++|+|++|+|. ..+..++.+-.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l~ 113 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSLP 113 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhhh
Confidence 56799999999999999999999999999999875321 1333456778876 479999999995 45666664433
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 222 MTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
...++++++++|++...-...+++.+.+..
T Consensus 114 ~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 114 LQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 667899999999999765556666666543
No 53
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.03 E-value=1e-09 Score=104.13 Aligned_cols=100 Identities=18% Similarity=0.334 Sum_probs=81.7
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
+..+.|++|+|+|+|.||..+++.++++|++|+++++++.+.. ++. ..++++.+..+|+|+.+.. +..++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i 271 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDII 271 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHH
Confidence 3357899999999999999999999999999999988765532 332 3356788899999988753 45678
Q ss_pred cHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 043239 218 NKDVMTALGKEGVIINVGRGAL-IDEKELVH 247 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~~-vd~~al~~ 247 (286)
+...+..||+|++++|+|++.+ +|..+|..
T Consensus 272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 8888999999999999999876 77777664
No 54
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.03 E-value=9.8e-10 Score=100.83 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=68.7
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh-cC
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT-AL 225 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~-~m 225 (286)
.+++|+|||+|.||+.+|++|...|++|.+|+|+.. .++.++++++|+|++++|. +..+.++. .... .+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l~~~~~ 72 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVAE-QVQALNL 72 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HHHHhcC
Confidence 357999999999999999999999999999999753 4788899999999999996 56777763 3333 47
Q ss_pred CCCcEEEEcCCCc
Q 043239 226 GKEGVIINVGRGA 238 (286)
Q Consensus 226 k~g~ilvn~srg~ 238 (286)
+++.++|++++|-
T Consensus 73 ~~~~ivi~~s~gi 85 (308)
T PRK14619 73 PPETIIVTATKGL 85 (308)
T ss_pred CCCcEEEEeCCcc
Confidence 8899999998753
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.96 E-value=1.8e-09 Score=103.66 Aligned_cols=101 Identities=20% Similarity=0.333 Sum_probs=79.3
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
++|+||| +|.||+++|+.|+..|++|.+++|+.+... +.....+..+.+++||+|++|+|. ..+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 4899997 899999999999999999999998765421 333345778889999999999995 4455555 566
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 222 MTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
.+.++++++++|++.......+++.+.+..
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~ 108 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPE 108 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCC
Confidence 778999999999998766666666666543
No 56
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.95 E-value=9.9e-10 Score=90.53 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
|++|+|+|||||..|++.|.+|+..|.+|.+-.|..++. .++. ..+..|++++||+|++.+|+. ....+..+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDE-VQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence 579999999999999999999999999999877766521 2333 568999999999999999954 34556678
Q ss_pred HHHhcCCCCcEEE
Q 043239 220 DVMTALGKEGVII 232 (286)
Q Consensus 220 ~~l~~mk~g~ilv 232 (286)
+..++||+|..++
T Consensus 80 ~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 80 EIAPNLKPGATLV 92 (165)
T ss_dssp HHHHHS-TT-EEE
T ss_pred HHHhhCCCCCEEE
Confidence 8899999999765
No 57
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.92 E-value=3.2e-09 Score=97.62 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCC-CCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK-KKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~-~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
|+|++|||||+|+||+++|+.|+.+|++|+++++. .+.. .++. ..+..+++++||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 57899999999999999999999999988765443 2221 1332 34688899999999999995533 334456
Q ss_pred HHHhcCCCCcEEEEcCCCccc
Q 043239 220 DVMTALGKEGVIINVGRGALI 240 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~v 240 (286)
+..+.++++. +|.++.|=-+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6778898886 7888877443
No 58
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.92 E-value=3e-09 Score=96.13 Aligned_cols=127 Identities=21% Similarity=0.293 Sum_probs=85.6
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC--CC-----Ccc--cccCH-HHhhcCCCEEEEeccCChhhhhcc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP--GV-----SYP--FYANV-SGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~--~~-----~~~--~~~~l-~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
.++|+|+|+|.||+++|+.++..|+.|.+++++... .. +.. ...+. .+...++|+|++++|- ..+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 468999999999999999999999977555544432 21 111 11233 5677889999999995 4556555
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcC----Ccccccc-ccccc
Q 043239 218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQR----SCLHWIM-LCCLH 282 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~----~~l~~~~-~~tph 282 (286)
++..+.+|+|++++|++.-.--.-+++.+.+.+. . .+....|++++ ..+.... ++||.
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----~-~~vg~HPM~G~~~~~~lf~~~~~vltp~ 144 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGD-----V-RFVGGHPMFGPEADAGLFENAVVVLTPS 144 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCC-----C-eeEecCCCCCCcccccccCCCEEEEcCC
Confidence 4566689999999999876654444554444332 1 45567787777 2222222 88885
No 59
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.92 E-value=4.4e-09 Score=95.48 Aligned_cols=80 Identities=23% Similarity=0.432 Sum_probs=67.4
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.||+|+|||.| .||++||.+|...|++|++|++.. .++.++.++||+|+++++.. +.+....
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------~~l~e~~~~ADIVIsavg~~----~~v~~~~ 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------TDAKALCRQADIVVAAVGRP----RLIDADW 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhcCCEEEEecCCh----hcccHhh
Confidence 447999999999996 999999999999999999997653 27899999999999999854 3455544
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 221 ---ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LKPGAVVIDVGINR 234 (301)
T ss_pred ---ccCCcEEEEecccc
Confidence 79999999998443
No 60
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.90 E-value=8.2e-10 Score=83.57 Aligned_cols=85 Identities=24% Similarity=0.445 Sum_probs=63.0
Q ss_pred EEEEEcCChHHHHHHHHhccCC---CEEE-EECCCCCCCC------Cccccc-CHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFG---CSIA-YTSRKKKPGV------SYPFYA-NVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g---~~V~-~~~r~~~~~~------~~~~~~-~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
||||||+|+||+++++.|...| .+|. +++|++++.. +..... +..+++++||+|++|+|.. ....+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8998 5588876542 222233 7889999999999999843 333333
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 043239 219 KDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~srg 237 (286)
++. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 556789999998754
No 61
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=6.2e-09 Score=90.41 Aligned_cols=112 Identities=17% Similarity=0.264 Sum_probs=95.1
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHh---hcCCCEEEEeccCChhhhhcccHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGL---AADSDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~~i~~~ 220 (286)
+++|+||+|+||..+++++...|++|++||+++... .+.....+++|+ +....+|.+++|..+-|..++ .+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 579999999999999999999999999999987643 244456677765 566789999999887777777 46
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR 263 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~ 263 (286)
+-+.|.+|-++||-+....-|....++.|.++.|. .+||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 78889999999999999999999999999999997 567653
No 62
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.90 E-value=2.8e-09 Score=102.66 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=100.0
Q ss_pred HHHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHhhcC---CCEEEEeccCChhhhhcccHHHHhcC
Q 043239 159 IGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGLAAD---SDVLIVCCALTEETHHMINKDVMTAL 225 (286)
Q Consensus 159 iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~l~~---aDiV~~~lp~~~~t~~~i~~~~l~~m 225 (286)
||+.||++|...|++|.+|||++++.. +...+.+++++++. +|+|++|+|..+.+..++ ...++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999986532 24456799998875 899999999999999988 4688999
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCCc
Q 043239 226 GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRSC 272 (286)
Q Consensus 226 k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~~ 272 (286)
.+|.++||+|+...-++..+.+.+++.++......|+..+..+..++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~ 126 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP 126 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC
Confidence 99999999999999999999999999999999999999998766664
No 63
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.89 E-value=1.7e-08 Score=94.68 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=82.3
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHhcc-CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH-
Q 043239 146 LGGKRVGIVGL-GSIGSEVAKRLVP-FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM- 222 (286)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~A~~l~~-~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l- 222 (286)
+...+|+|||+ |.||+++|+.|+. +|.+|+++|+..+ ...++++.+++||+|++|+|.. .+..++. +..
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l~-~l~~ 73 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALIE-EYVA 73 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHH-HHhh
Confidence 45679999999 9999999999996 5889999998532 1346788899999999999953 4454553 333
Q ss_pred --hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC--cc--ccccccccc
Q 043239 223 --TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS--CL--HWIMLCCLH 282 (286)
Q Consensus 223 --~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~--~l--~~~~~~tph 282 (286)
+.++++++++|++.-+. ...+++.... .++....|++++. .+ +...++||.
T Consensus 74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred hhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 34899999999976552 2222222221 2466777877653 22 222377774
No 64
>PLN02712 arogenate dehydrogenase
Probab=98.89 E-value=4.8e-09 Score=105.44 Aligned_cols=106 Identities=19% Similarity=0.378 Sum_probs=78.1
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcccccCHHHhh-cCCCEEEEeccCChhhhhcccH
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYPFYANVSGLA-ADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
.-..++|||||+|.||+.+|+.|+.+|++|.+++++.... .+.....++++++ .++|+|++|+|. ..+..++..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 3456799999999999999999999999999999874321 1333456788865 569999999995 567777755
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 220 DVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
-.+..++++++|+|++.-+..--+++.+.+..
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence 44467999999999975553333444444433
No 65
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.88 E-value=2.6e-09 Score=97.38 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=75.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C------------cccccCHHHhhcCC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S------------YPFYANVSGLAADS 200 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~------------~~~~~~l~e~l~~a 200 (286)
++|+|||+|.||..+|+.+...|++|++||++.+... + .....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 5899999999999999999999999999998875421 0 01122223568999
Q ss_pred CEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 043239 201 DVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLV 250 (286)
Q Consensus 201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~ 250 (286)
|+|+.|+|..++.+..+-++..+.++++++|+ |+|.-+ ...+.+.+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 99999999999988887777778899999886 676654 444555554
No 66
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.87 E-value=2.5e-09 Score=97.14 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=81.7
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC-----------------------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-----------------------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-----------------------------~~~~~~l~e~l~~ 199 (286)
++|+|||+|.||..+|..|...|++|++||++++.... .....++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 47999999999999999999999999999987654211 1124577889999
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCeeEEEeecc
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVI-INVGRGALIDEKELVHFLVRGSLVELVLMCL 262 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~il-vn~srg~~vd~~al~~al~~~~i~ga~lDv~ 262 (286)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|..++ ..+.+.+. ..-+..++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~-~~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTK-RPERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CcccEEEEecC
Confidence 99999999987766655555666778999876 78877554 44555553 33334566666
No 67
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.87 E-value=8.2e-09 Score=92.55 Aligned_cols=99 Identities=21% Similarity=0.354 Sum_probs=75.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC----EEEEE-CCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC----SIAYT-SRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~-~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
++|||||+|+||.++++.|...|+ +|+++ +|+.++.. +.....+..+++++||+|++|+| .+....++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 579999999999999999998887 88888 88765432 34445678888999999999997 45566666
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
.+..+.++++.++|++..| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3455677889999988655 466666665543
No 68
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.84 E-value=1.2e-08 Score=92.66 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=70.1
Q ss_pred HHHHHHHhccCCCEEEEECCCCCCC----------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239 160 GSEVAKRLVPFGCSIAYTSRKKKPG----------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229 (286)
Q Consensus 160 G~~~A~~l~~~g~~V~~~~r~~~~~----------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ 229 (286)
|..||++|...|++|++|||+.... .+.....+..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 8999999999999999999875422 145566789999999999999999888888887 56889999999
Q ss_pred EEEEcCCCcccCHHHHH
Q 043239 230 VIINVGRGALIDEKELV 246 (286)
Q Consensus 230 ilvn~srg~~vd~~al~ 246 (286)
++||+|+.++......+
T Consensus 111 IVID~STIsP~t~~~~~ 127 (341)
T TIGR01724 111 VICNTCTVSPVVLYYSL 127 (341)
T ss_pred EEEECCCCCHHHHHHHH
Confidence 99999876654443333
No 69
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.84 E-value=4e-09 Score=99.85 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=71.3
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC------CC-----CCCcccccCHHHhhcCCCEEEEeccCChh
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK------KP-----GVSYPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~------~~-----~~~~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
..|+|++|+|||+|.+|+..|..|+..|++|.+--|.. +. ..++ ...+++|++++||+|++.+|++ .
T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt-~ 109 (487)
T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDK-Q 109 (487)
T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChH-H
Confidence 56999999999999999999999999999887444432 11 1233 3468999999999999999988 3
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q 043239 213 THHMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~srg 237 (286)
.+.+.++.+++||+|+.|. .|.|
T Consensus 110 -q~~v~~~i~p~LK~Ga~L~-fsHG 132 (487)
T PRK05225 110 -HSDVVRAVQPLMKQGAALG-YSHG 132 (487)
T ss_pred -HHHHHHHHHhhCCCCCEEE-ecCC
Confidence 6666699999999999753 4444
No 70
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.81 E-value=1.3e-08 Score=97.07 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=76.1
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------C-cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------S-YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------~-~~~~~~l~e~l~~aDiV 203 (286)
++|+|||+|.||..+|..|...|++|++||++.++.. + .....++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 4799999999999999999999999999998765321 1 12335777889999999
Q ss_pred EEeccCChh---------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239 204 IVCCALTEE---------THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249 (286)
Q Consensus 204 ~~~lp~~~~---------t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al 249 (286)
++|+|.... ....+ +...+.+++|.++|+.|.-.+-..+.+...+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~-~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA-ETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH-HHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999995432 22222 3466778999999999987776777776444
No 71
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.81 E-value=1.7e-08 Score=93.34 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=76.1
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C------cccccCHHHhhcCCCEEEEecc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S------YPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~------~~~~~~l~e~l~~aDiV~~~lp 208 (286)
.++|+|||+|.||..+|.+|...|++|.+|+|+.+... + .....++.++++++|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 46899999999999999999999999999999754311 1 1234578888899999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHh
Q 043239 209 LTEETHHMINKDVMTALGKEGVIINVGRG-ALID--EKELVHFLVR 251 (286)
Q Consensus 209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg-~~vd--~~al~~al~~ 251 (286)
.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 54 22 5566888999999999997 4333 5566666655
No 72
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.81 E-value=9.5e-09 Score=98.33 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=78.0
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----Ccc----------------cccCHHHhhcCCCEEEEec
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYP----------------FYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~----------------~~~~l~e~l~~aDiV~~~l 207 (286)
.++|||||+|.||..+|..|.+ |++|++||+++++.. +.. .+.+..+.+++||++++|+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 3789999999999999999887 699999999876532 110 2334345789999999999
Q ss_pred cCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 208 ALT------EETHHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 208 p~~------~~t~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
|.. ++...+. .+...+.+++|.++|+.|+-.+-..+.++..+-.
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 955 2334444 3456788999999999999999888876554433
No 73
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.80 E-value=2.4e-08 Score=83.78 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=69.7
Q ss_pred ccCCCCEEEEEcCChH-HHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 144 STLGGKRVGIVGLGSI-GSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~i-G~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
.++.|+++.|||.|.| |..+|+.|...|.+|++.+|+. .++.+.++++|+|+++++.. . ++.++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~---~-ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP---G-LVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC---c-eecHHH-
Confidence 3589999999999997 8889999999999999998862 47888999999999998742 3 687775
Q ss_pred hcCCCCcEEEEcCCCcccC
Q 043239 223 TALGKEGVIINVGRGALID 241 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~~vd 241 (286)
++++.++||++...-+|
T Consensus 106 --~~~~~viIDla~prdvd 122 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD 122 (168)
T ss_pred --ccCCeEEEEccCCCccc
Confidence 57899999999887766
No 74
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.79 E-value=9.9e-09 Score=92.90 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=66.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-PFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
++|+|||+|.||+++|+.|+..|++|.+|+++.+... +. ....+..+.+++||+|++|+|.. ....++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHH
Confidence 4799999999999999999999999999998765422 11 11222235678999999999943 333333 5667
Q ss_pred hcCCCCcEEEEcCCCc
Q 043239 223 TALGKEGVIINVGRGA 238 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~ 238 (286)
+.++++++++|++.-.
T Consensus 79 ~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 79 PALPPEAIVTDVGSVK 94 (279)
T ss_pred HhCCCCcEEEeCcchH
Confidence 7789999999997755
No 75
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.79 E-value=1.9e-08 Score=94.75 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=84.1
Q ss_pred CcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 104 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
....++..+-.++...|...+ ....... .-..++|+||| +|.||+++|+.|+..|+.|.+|+++.
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q~------~~~~~~~-------~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~- 132 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSEN------DKGFKTL-------NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD- 132 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHhH------Hhccccc-------CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc-
Confidence 334456666666666665321 1111110 11457999999 99999999999999999999999853
Q ss_pred CCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239 183 PGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248 (286)
Q Consensus 183 ~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a 248 (286)
..+.++++++||+|++|+|... +..++ ++..+ +++|++++|++.-+..-..++.+.
T Consensus 133 -------~~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 133 -------WDRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -------chhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 1367788999999999999654 45455 34555 899999999977654444445444
No 76
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.78 E-value=2.7e-08 Score=90.39 Aligned_cols=78 Identities=19% Similarity=0.414 Sum_probs=65.8
Q ss_pred ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEEC-CCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTS-RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~-r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
.++.|++|+||| .|.||++||.+|...|+.|++|+ |+. ++++++++||+|+++++..+ .+....
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~ 219 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW 219 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence 368999999999 99999999999999999999994 653 58899999999999998543 444433
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 220 ---lk~GavVIDvGin~ 233 (296)
T PRK14188 220 ---IKPGATVIDVGINR 233 (296)
T ss_pred ---ecCCCEEEEcCCcc
Confidence 89999999998544
No 77
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.77 E-value=1.3e-08 Score=91.84 Aligned_cols=98 Identities=14% Similarity=0.252 Sum_probs=76.1
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC----EEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC----SIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
++|||||+|+||+++++.|...|+ +|++++|+.++.. +.....+..+++++||+|++|+|. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 589999999999999999988774 6999998776522 333456778889999999999994 5666665
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 219 KDVMTALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
++..+.++++.++|++.-| ++.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 4455667888999999877 56666777664
No 78
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.77 E-value=2e-08 Score=91.82 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=85.8
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
-++||++.|.|||..|+-+|.++++.|++|.++.-.+-++ +++. ...++++...+|+++.+.- ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 4799999999999999999999999999999988766543 2443 5679999999999998754 6889999
Q ss_pred HHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHhCCee
Q 043239 220 DVMTALGKEGVIINVGRGAL-IDEKELVH-FLVRGSLV 255 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~-vd~~al~~-al~~~~i~ 255 (286)
+++..||+|+++-|++.-.+ ||-..|.+ +.+...++
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 99999999999999986655 66666653 23444444
No 79
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.76 E-value=3.2e-08 Score=94.48 Aligned_cols=104 Identities=12% Similarity=0.193 Sum_probs=77.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC----cc--cccCHHHh---------------hcCCCEEEEec
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS----YP--FYANVSGL---------------AADSDVLIVCC 207 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~----~~--~~~~l~e~---------------l~~aDiV~~~l 207 (286)
++|+|||+|.||..+|..|+..|++|++||+++++... .. ....++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999998764321 00 11233333 34799999999
Q ss_pred cCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 208 ALT------EETHHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 208 p~~------~~t~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
|.. ++...+. -+...+.+++|+++|+.|+-.+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 954 1112221 24567889999999999999888888888877764
No 80
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.75 E-value=4.7e-08 Score=80.18 Aligned_cols=105 Identities=23% Similarity=0.271 Sum_probs=78.1
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------Cc----ccccCHHHhhcCCCEEEEeccCChh-
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SY----PFYANVSGLAADSDVLIVCCALTEE- 212 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~----~~~~~l~e~l~~aDiV~~~lp~~~~- 212 (286)
++.+++++|+|+|.||..+++.+...| .+|.+++|+.++.. +. ....+..++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 356789999999999999999999886 68999999865432 11 1345777788999999999997653
Q ss_pred hhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 213 THH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 213 t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
... .+.. ..++++.+++|++..+... .+.+++++.++
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~ 133 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA 133 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence 122 2222 2368999999998765443 88888887755
No 81
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.75 E-value=7.2e-08 Score=88.89 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=88.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------------CcccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------------SYPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------------~~~~~~~l~e~l~~aDiV 203 (286)
++|+|||.|.||..+|..+...|++|.+||++++... ......++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 5899999999999999999999999999999764211 012346888999999999
Q ss_pred EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
+-++|...+.+..+-++..+.+++++ ++.+++. -+...++.+.++. .=+.+++=.|.+.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~-p~R~~g~HffnP~ 146 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARATH-PERCVVGHPFNPV 146 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCC-cccEEEEecCCcc
Confidence 99999999888888788888899998 5555555 4577788887743 3344555556444
No 82
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.74 E-value=2.9e-08 Score=90.39 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=78.5
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|+|||+|.||..+|..+...|++|++||++.+... + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 5899999999999999999999999999998764321 1 11234554 5789
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLR 263 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~ 263 (286)
||+|+.|+|...+....+-++..+.++++++|+ |+|.-. ...+.+.+.. .-+..++-.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence 999999999876655555466777889999887 555544 3467776532 22334555555
No 83
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.72 E-value=1.9e-08 Score=94.63 Aligned_cols=97 Identities=15% Similarity=0.267 Sum_probs=75.3
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cc------ccccCHHHhhcCCCEEEEeccCC-h
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SY------PFYANVSGLAADSDVLIVCCALT-E 211 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~------~~~~~l~e~l~~aDiV~~~lp~~-~ 211 (286)
.+.+.++.|+|+|.+|+.+++.++.+|++|.++|++.++.. +. ....++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36778899999999999999999999999999998764321 11 01235677889999999997542 2
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC--CCcccC
Q 043239 212 ETHHMINKDVMTALGKEGVIINVG--RGALID 241 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd 241 (286)
.+..+++++.+..||++++|||++ .|+.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e 275 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVE 275 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEecCCCCCcc
Confidence 245578999999999999999987 455443
No 84
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.72 E-value=2.7e-08 Score=93.30 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=71.6
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc----cccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP----FYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++|+|||+|.||+++|+.|+..|++|.+++++..... +.. ...++++++++||+|++|+|. ..+..++ +
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-A 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH-H
Confidence 4799999999999999999999998888877655321 111 235678889999999999996 4566665 3
Q ss_pred HHHh-cCCCCcEEEEcCCCcccCHHHHHH
Q 043239 220 DVMT-ALGKEGVIINVGRGALIDEKELVH 247 (286)
Q Consensus 220 ~~l~-~mk~g~ilvn~srg~~vd~~al~~ 247 (286)
+..+ .++++++++|++.-+.-..+++.+
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~ 107 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEA 107 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHH
Confidence 4444 488999999998776544444433
No 85
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.72 E-value=4.1e-08 Score=90.03 Aligned_cols=89 Identities=19% Similarity=0.384 Sum_probs=68.3
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----Cc--ccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----SY--PFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
.++|+|||+|.||..+|+.|+..|+ +|.+|+|+.+... +. ....++++.+++||+|++|+|.. ....++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998885 8999999865321 21 12357778889999999999953 333333
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q 043239 219 KDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~srg~ 238 (286)
++..+.++++.+++|++...
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred HHHHhhCCCCCEEEeCccch
Confidence 45667789999999997654
No 86
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.72 E-value=4.4e-08 Score=88.65 Aligned_cols=100 Identities=15% Similarity=0.221 Sum_probs=73.8
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCCC-C------CCcccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKP-G------VSYPFYANVSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~~-~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
.+++|+|||+|+||.++++.|...| .+|.+++|+..+ . .+.....+..+++++||+|++++|.. ....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence 3579999999999999999999877 689999987532 1 13334567888899999999999943 4444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
++ .+..+.++++.++|++.-| +..+.+.+.+.
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 44 4555667889999998655 35555666553
No 87
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.71 E-value=7.9e-08 Score=82.92 Aligned_cols=105 Identities=22% Similarity=0.358 Sum_probs=82.1
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------CcccccCHHHhhc-CCCEEEEeccCChhhhh
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYANVSGLAA-DSDVLIVCCALTEETHH 215 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~ 215 (286)
+.+++|++++|+|+|+||+.+|+.|..+|++|+++|++.+... +.. ..+.++++. +||+++.|.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcchhhccccCCEEEeccc-----cc
Confidence 3468999999999999999999999999999999998765321 222 223455654 7999986653 46
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
+++++.++.|+. .+++.-+.+.+.| ..-.+.|+++++.
T Consensus 97 ~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 889999999974 5788888888776 6677888888875
No 88
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.68 E-value=2e-08 Score=83.32 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=71.9
Q ss_pred EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------CcccccCHHHhhcCCCEEEEeccCC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SYPFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
+|+|+|.|++|.++|..|...|++|..|.|+.+... ......+++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 689999999999999999999999999999853210 122347899999999999999994
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCc----c-cCHHHHHHHHHhCCe
Q 043239 211 EETHHMINKDVMTALGKEGVIINVGRGA----L-IDEKELVHFLVRGSL 254 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~----~-vd~~al~~al~~~~i 254 (286)
...+.++ ++..+.++++..+|++..|= . .-.+.+.+.+....+
T Consensus 80 ~~~~~~~-~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~ 127 (157)
T PF01210_consen 80 QAHREVL-EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRI 127 (157)
T ss_dssp GGHHHHH-HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGE
T ss_pred HHHHHHH-HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcce
Confidence 3444444 56777788999999998663 2 234444445554443
No 89
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.68 E-value=8.4e-08 Score=86.58 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=66.1
Q ss_pred cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|++++|||. |.||++||.+|...|+.|++|... ..++.+.+++||+|+++++. .+++....
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~----~~~v~~~~ 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGR----GHFVTKEF 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCc----cccCCHHH
Confidence 44689999999999 999999999999999999998321 23789999999999999984 34465544
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 220 ---ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ---VKEGAVVIDVGMNR 233 (284)
T ss_pred ---ccCCcEEEEeccee
Confidence 79999999998444
No 90
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.67 E-value=3.5e-08 Score=90.73 Aligned_cols=88 Identities=18% Similarity=0.334 Sum_probs=69.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------CcccccCHHHhhcCCCEEEEeccC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SYPFYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~~~~~~l~e~l~~aDiV~~~lp~ 209 (286)
++|+|||+|.||..+|..|...|++|.+|+|+.+... +.....+++++++++|+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999999999999754211 122345778888999999999995
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239 210 TEETHHMINKDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg~ 238 (286)
..+..++ +...+.++++.++|+++.|-
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence 4556555 35666778899999997663
No 91
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.66 E-value=3.8e-08 Score=96.03 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=77.0
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------C-cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------S-YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------~-~~~~~~l~e~l~~aDiV 203 (286)
++|||||+|.||..+|..|...|++|++||++++... + .....++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 4899999999999999999999999999999865421 1 23356888899999999
Q ss_pred EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
+.++|...+.+..+-++.-+.++++++ |.+++.++ ....+.+.+...
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~ 131 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHP 131 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCc
Confidence 999998876666554455556777764 55555554 355777777543
No 92
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.66 E-value=1e-08 Score=81.96 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=61.4
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
...+|+|||.|++|..+++.|...|+.|. +++|+.+... +.....++.|+++++|++++++|++ ....+ -+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence 45699999999999999999999999986 4677764321 2234567889999999999999965 44433 34
Q ss_pred HHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 220 DVMTA--LGKEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 220 ~~l~~--mk~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
++... .++|.+++-+| |. ...+-|..+-+.|-
T Consensus 87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGA 120 (127)
T ss_dssp HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-
T ss_pred HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCC
Confidence 44444 68999999984 32 33334444444443
No 93
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.64 E-value=1.9e-08 Score=81.34 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=71.7
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC------C-----cccccCHHHhhcCCCEEEEeccCChh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV------S-----YPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~------~-----~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
+++|+++.|||.|.+|+.++..|...|++ |++++|+.++.. + .....++.+.+.++|+|+.+.|..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~-- 86 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG-- 86 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT--
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC--
Confidence 68999999999999999999999999995 999999876532 1 123566777889999999998754
Q ss_pred hhhcccHHHHhcCCCCc-EEEEcCCCcccC
Q 043239 213 THHMINKDVMTALGKEG-VIINVGRGALID 241 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~-ilvn~srg~~vd 241 (286)
...+.++.++..++.. +++|++...-|+
T Consensus 87 -~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 87 -MPIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp -STSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred -CcccCHHHHHHHHhhhhceeccccCCCCC
Confidence 3378888887665544 999998765444
No 94
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.63 E-value=6.7e-08 Score=87.24 Aligned_cols=95 Identities=15% Similarity=0.298 Sum_probs=67.8
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC-----Ccc-cccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----SYP-FYANVSGLAADSDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~~~-~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~ 220 (286)
++|+|||+|.||+++|+.|+..|+ +|++++++.+... +.. ...+..++. +||+|++|+|.. ....++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence 479999999999999999998885 7899998765421 221 234667765 599999999954 344444 45
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
..+ ++++++++|++.- ...+.+.+.+
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 666 8899999998553 3445555543
No 95
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.62 E-value=8.1e-08 Score=93.94 Aligned_cols=113 Identities=11% Similarity=0.166 Sum_probs=85.0
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|||||+|.||..||..+...|++|++||++.+... + .....++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 5799999999999999999999999999999876422 1 123456655 579
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVI-INVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL 266 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~il-vn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~ 266 (286)
||+|+-++|...+.+..+-.+.-..++++++| +|+|.-++- .+..++.. .=+..++..|.+-+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~-p~r~~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKH-PERVAGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCC-cccEEEEeecCCcc
Confidence 99999999999888887766666667899998 589877763 56666543 22245677776443
No 96
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=1.5e-07 Score=87.14 Aligned_cols=122 Identities=14% Similarity=0.196 Sum_probs=101.1
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHh---hcCCCEEEEeccCChhhhh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGL---AADSDVLIVCCALTEETHH 215 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~ 215 (286)
..||+||+|.||+.+|......|++|.+|+|+.++.+ ....+.+++|+ ++.-.-|++++........
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 4799999999999999999999999999999987632 23345677765 5667788888765533355
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS 271 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~ 271 (286)
+| ++.+++|.+|-++||-+...--|+....++|.+..|.+.+.=|...|..+..+
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G 138 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG 138 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC
Confidence 55 57899999999999999999999999999999999999999999999644443
No 97
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.62 E-value=1.3e-07 Score=85.29 Aligned_cols=80 Identities=18% Similarity=0.381 Sum_probs=67.9
Q ss_pred cccCCCCEEEEEcCChH-HHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGSI-GSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~i-G~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||.|.+ |+.+|..|...|++|+++... ..++.+.+++||+|+++++ +.++++.
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~-- 217 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA-- 217 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence 34689999999999999 999999999999999886532 2478899999999999998 4567877
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+++|+|+++||+|.-.
T Consensus 218 -~~ik~gavVIDVGin~ 233 (285)
T PRK14189 218 -DMVKPGATVIDVGMNR 233 (285)
T ss_pred -HHcCCCCEEEEccccc
Confidence 4479999999998654
No 98
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.61 E-value=1.7e-07 Score=85.29 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=80.5
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------Cc-------------ccccCHHHh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SY-------------PFYANVSGL 196 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~-------------~~~~~l~e~ 196 (286)
++|+|||.|.||..+|..+...|++|+++|++.+... +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999998765321 00 112344 56
Q ss_pred hcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 197 l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
+++||+|+.++|...+....+-++.-+.++++++|++...| +....+.+.+.. .-+..++..+.+.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCc
Confidence 78999999999977654444445566678899998877665 466777777743 2334556666543
No 99
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.60 E-value=1.2e-07 Score=92.70 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=84.4
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|||||+|.||..||..+...|++|++||++.+... + .....++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999999876421 1 112456655 579
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL 266 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~ 266 (286)
||+|+.|+|...+.+..+-.+.-..++++++|. |+|.-++ ..+.+++. ..-+..++..|.+-|
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~-~p~r~~G~HFf~Pap 148 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLA-RPERVAGLHFFNPAP 148 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcC-cccceEEEeccCccc
Confidence 999999999888887777666666678888765 6655544 45666664 344567788887554
No 100
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.60 E-value=7e-08 Score=86.52 Aligned_cols=90 Identities=17% Similarity=0.340 Sum_probs=76.2
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
.+.||.+.|.|||.+|+.+|+.|+++|.+|++....+-.+ ++++ ..+++|++++.|+++.+. .++.+|..
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~ 285 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITG 285 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhH
Confidence 3789999999999999999999999999999887655332 2333 568999999999998864 47889999
Q ss_pred HHHhcCCCCcEEEEcCCCcc
Q 043239 220 DVMTALGKEGVIINVGRGAL 239 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~ 239 (286)
++|.+||+++++.|++.-.+
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999986543
No 101
>PRK07680 late competence protein ComER; Validated
Probab=98.60 E-value=1.1e-07 Score=85.68 Aligned_cols=98 Identities=14% Similarity=0.355 Sum_probs=73.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC----EEEEECCCCCCCC-------CcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC----SIAYTSRKKKPGV-------SYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~~r~~~~~~-------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
++|+|||+|.||+.+++.|...|. +|.+++|+.++.. +.....+..+++.++|+|++++|. .....++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 379999999999999999988773 7899999865421 233456788888999999999973 3455554
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
++..+.++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4455677888999999854 36777776665
No 102
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.60 E-value=1.2e-07 Score=85.47 Aligned_cols=103 Identities=23% Similarity=0.327 Sum_probs=77.5
Q ss_pred CCEEEEEcCChHHHHHHHHhcc--CCCEEE-EECCCCCCCC------C-cccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP--FGCSIA-YTSRKKKPGV------S-YPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~--~g~~V~-~~~r~~~~~~------~-~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
.++|||||+|.||+.+++.+.. .++++. +++|++++.. + ...+.+++++++++|+|++|+|.... .. +
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e-~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA-I 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH-H
Confidence 4799999999999999999986 478875 7788765432 2 23467899999999999999985422 21 2
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
....++.|.-++..+.+.+.+.++|.++.++++..
T Consensus 84 ---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 84 ---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 23334667666777899888899999999987765
No 103
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=1.5e-07 Score=85.57 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=78.8
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------------CcccccCHHHhhc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------------SYPFYANVSGLAA 198 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------------~~~~~~~l~e~l~ 198 (286)
++|+|||.|.||..+|..+...|++|++|+++.+... ......+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998764211 0112467888899
Q ss_pred CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR 263 (286)
Q Consensus 199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~ 263 (286)
+||+|+.|+|...+....+-++..+.++++++|++.+.+ +....+.+.+.. .-+..++-.|.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~-~~r~vg~Hf~~ 145 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGR-PEKFLALHFAN 145 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCC-cccEEEEcCCC
Confidence 999999999976555544445666778889888543332 345566666543 22344444443
No 104
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.59 E-value=1.2e-07 Score=86.91 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=70.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------C--------------cccccCHHHhhcCCCEEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S--------------YPFYANVSGLAADSDVLI 204 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~--------------~~~~~~l~e~l~~aDiV~ 204 (286)
++|+|||+|.||..+|..|...|++|++++++.+... + .....++.+++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998764321 0 112356778889999999
Q ss_pred EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
+|+|...+....+-.+.-..++++++++....| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999976543333333444456777766533333 34567777764
No 105
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.57 E-value=1.4e-07 Score=86.54 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=72.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|+|||+|.||.++|..|...|++|++||++++... + .....++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999999864211 1 1234688888999
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
||+|+.++|...+....+-++.-+..++..+ +..+.. ......+.+.+....
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~i-i~ssts-~~~~~~la~~~~~~~ 134 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAI-LASSTS-ALLASAFTEHLAGRE 134 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcce-EEEeCC-CCCHHHHHHhcCCcc
Confidence 9999999997755444443333333444444 443333 355677888775533
No 106
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.56 E-value=1e-07 Score=86.68 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=82.5
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------Cc-------------ccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------SY-------------PFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~~-------------~~~~~l~e~l~~ 199 (286)
++|||||.|.||..+|..+...|++|+.||++++... +. ....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 3899999999999999999999999999999876421 10 123566 55899
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTAL-GKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~m-k~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
||+|+-|+|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+ .++..++.. .=+..++..|.+.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~P~ 148 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFNPV 148 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCCCc
Confidence 99999999999888877766555555 899999877655444 444444432 2234567777643
No 107
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.54 E-value=1.8e-07 Score=83.71 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=73.1
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCE---EEEECCCCCCCC-------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCS---IAYTSRKKKPGV-------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~---V~~~~r~~~~~~-------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
++|||||+|+||+++++.|...|.. +.+++|+.++.. +.....+..++++++|+|++++| .+....++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 3799999999999999999887753 578898765422 23345688888999999999999 344555543
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 219 KDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
. + .++++.++|+++ .-+..+.|.+.+..+
T Consensus 80 ~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 A--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred H--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 2 257889999986 347888888887654
No 108
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.53 E-value=4.4e-07 Score=82.16 Aligned_cols=111 Identities=13% Similarity=0.166 Sum_probs=78.5
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|+|||+|.||..+|..+...|++|+++|++++... + .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 4799999999999999999999999999998765431 1 01133454 4789
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR 263 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~ 263 (286)
||+|+.|+|...+.+.-+-++..+.++++++++....| +....+.+.+... -+..++--+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~ 143 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN 143 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC
Confidence 99999999977776655555677778999988443333 5566888877432 2344454444
No 109
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.51 E-value=1.3e-07 Score=82.35 Aligned_cols=130 Identities=14% Similarity=0.199 Sum_probs=91.7
Q ss_pred CCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHh--ccCCCEEE-EEC
Q 043239 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL--VPFGCSIA-YTS 178 (286)
Q Consensus 102 ~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l--~~~g~~V~-~~~ 178 (286)
....+.++|.+..++...|++.. |. ..++++|+|+|.+|+.+++.+ ...|+++. ++|
T Consensus 58 ~~G~~~~gy~v~~l~~~~~~~l~---------~~-----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D 117 (213)
T PRK05472 58 EFGKRGVGYNVEELLEFIEKILG---------LD-----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD 117 (213)
T ss_pred hcCCCCCCeeHHHHHHHHHHHhC---------CC-----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence 45567778999999998888641 11 245899999999999999863 45788876 466
Q ss_pred CCCCCCC----C--cccccCHHHhhcC--CCEEEEeccCChhh---hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239 179 RKKKPGV----S--YPFYANVSGLAAD--SDVLIVCCALTEET---HHMINKDVMTALGKEGVIINVGRGALIDEKELVH 247 (286)
Q Consensus 179 r~~~~~~----~--~~~~~~l~e~l~~--aDiV~~~lp~~~~t---~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~ 247 (286)
++++... + .....++.+++++ .|++++++|..... ..+.......-+...++.+|+.+|.+|+..+|..
T Consensus 118 ~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~ 197 (213)
T PRK05472 118 VDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTV 197 (213)
T ss_pred CChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHH
Confidence 6543321 1 1224567777755 99999999976542 2222222334456678899999999999999999
Q ss_pred HHHh
Q 043239 248 FLVR 251 (286)
Q Consensus 248 al~~ 251 (286)
+|..
T Consensus 198 ~l~~ 201 (213)
T PRK05472 198 ELQT 201 (213)
T ss_pred HHHH
Confidence 8864
No 110
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.50 E-value=4.6e-07 Score=81.92 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=66.8
Q ss_pred ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
.++.|+++.|||.|. +|+.+|..|...|++|+++.+.. .++.+.+++||+|+++++. .+++.++.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~- 219 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV- 219 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH-
Confidence 368999999999999 99999999999999998877532 3788999999999999873 44677764
Q ss_pred hcCCCCcEEEEcCCCc
Q 043239 223 TALGKEGVIINVGRGA 238 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 220 --vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 --VKEGAVIIDVGNTP 233 (286)
T ss_pred --cCCCcEEEEcCCCc
Confidence 68999999998543
No 111
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.50 E-value=3.9e-07 Score=86.29 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=76.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------------------Cccc--ccCHHHhhcCCCEEEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------------------SYPF--YANVSGLAADSDVLIV 205 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------------------~~~~--~~~l~e~l~~aDiV~~ 205 (286)
++|+|||+|.||..+|..+.. |++|+++|++.++.. .... ..+..+++++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 479999999999999987765 999999998876421 0111 1235677899999999
Q ss_pred eccCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 206 CCALTE----------ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 206 ~lp~~~----------~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
|+|... ..+..+ +...+ +++|.++|+.|+-.+=..+.+.+.+.+..+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v 136 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENI 136 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcE
Confidence 999541 112222 33444 799999999999999899999988776443
No 112
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.48 E-value=4.2e-07 Score=78.08 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=65.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~ 220 (286)
++++|+|.|+||..+|++|.+.|++|.+-+|+..+.. ......+.+++.+.+|+|++++|.. ....+ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhH-HHH
Confidence 6899999999999999999999999988766554321 1123457888999999999999964 33333 355
Q ss_pred HHhcCCCCcEEEEcCCC
Q 043239 221 VMTALGKEGVIINVGRG 237 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg 237 (286)
....+. |.++||+.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 666565 8899999764
No 113
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.48 E-value=8.2e-07 Score=80.35 Aligned_cols=99 Identities=17% Similarity=0.329 Sum_probs=72.6
Q ss_pred CEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCCCC-------C-CcccccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKPG-------V-SYPFYANVSGLAADSDVLIVCCALTEETHHM 216 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~~~-------~-~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~ 216 (286)
++|+|||+|+||+++++.|...| .+|.+++|+.... . ......+..++++++|+|++|+|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999998877 6899888764321 1 112246778889999999999993 334444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 217 INKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 217 i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
+ ++..+.++++.++|.+.-| +..+.|-+.+..
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 4 3444567788899999877 666677777643
No 114
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.44 E-value=1.2e-06 Score=65.08 Aligned_cols=67 Identities=24% Similarity=0.444 Sum_probs=56.0
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccC-CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPF-GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
..+.+++++|+|.|.+|+.+++.+... +.+|.+++| |+++.+.+. ...+.++..
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~ 73 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT 73 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence 347889999999999999999999998 568999988 999998763 344555567
Q ss_pred hcCCCCcEEEEcC
Q 043239 223 TALGKEGVIINVG 235 (286)
Q Consensus 223 ~~mk~g~ilvn~s 235 (286)
..++++++++|++
T Consensus 74 ~~~~~~~~v~~~a 86 (86)
T cd05191 74 AKINEGAVVIDLA 86 (86)
T ss_pred HhcCCCCEEEecC
Confidence 8889999999874
No 115
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.42 E-value=3.1e-06 Score=82.32 Aligned_cols=181 Identities=12% Similarity=0.129 Sum_probs=106.6
Q ss_pred CceEEEEeCCCCCCHHHhccCCC-ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCC----CcChHHHHHHHHHHHHhcc
Q 043239 48 SVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAF----SEDGADYVVGLLVDVLRRV 122 (286)
Q Consensus 48 ~~d~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----~~~vAE~~l~~~L~~~R~~ 122 (286)
++|+|+.- .+.+++.++.+.. --+|+.....-|.=-++.+.+++|++....... +..+--+.-..-++.+|-+
T Consensus 64 ~adiIlkV--~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILKV--NAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEEe--CCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 56777732 2234555666654 445555554444334577889999987633111 1111101111112333333
Q ss_pred hHHHHHHHcCCCC-CCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-------
Q 043239 123 SSIDRFVRNGLWP-DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF------- 189 (286)
Q Consensus 123 ~~~~~~~~~~~w~-~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~------- 189 (286)
.+..+... ++. ... -..| .+.+.++.|+|+|.+|...++.++.+|.+|.+++++..+.. +...
T Consensus 142 i~Aa~~lg--r~~~g~~-taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e 217 (511)
T TIGR00561 142 IEAAHEFG--RFFTGQI-TAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 217 (511)
T ss_pred HHHHHHhh--hhcCCce-ecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence 33322221 111 010 0112 45678999999999999999999999999999988764321 1110
Q ss_pred ----------ccC----------HHHhhcCCCEEEEec--cCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 190 ----------YAN----------VSGLAADSDVLIVCC--ALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 190 ----------~~~----------l~e~l~~aDiV~~~l--p~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
..+ +.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||++
T Consensus 218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 001 445678999998876 3322 33578999999999999999997
No 116
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.41 E-value=4.8e-07 Score=79.00 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=63.8
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------Cc---ccccCHHHhhcCCCEEEEeccCCh
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------SY---PFYANVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~~---~~~~~l~e~l~~aDiV~~~lp~~~ 211 (286)
++|+||| .|.||+.+++.|...|++|.+++|+.++.. +. ....+..+.++++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 899999999999999999999998765421 10 01236678899999999999943
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239 212 ETHHMINKDVMTALGKEGVIINVGRGALI 240 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~v 240 (286)
....++ ++....++ +.++|++.-|--.
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 334333 23333344 4899999877433
No 117
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.39 E-value=1.1e-06 Score=89.79 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=74.7
Q ss_pred CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCC-----Ccc--cccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGV-----SYP--FYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~-----~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++|+|||+|.||.++++.++..| .+|++|+++.++.. +.. ...++.++++++|+|++|+|.. ....++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 48999999876421 221 2456788899999999999953 444444 3
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 220 DVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
+..+.++++.+++|++..+....+.+.+.+..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~ 113 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE 113 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccc
Confidence 45566788999999987654445555555543
No 118
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.38 E-value=3.1e-07 Score=78.29 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=67.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------C-------------cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------S-------------YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~-------------~~~~~~l~e~l~~aDiV 203 (286)
|+|+|+|+|.+|..+|..|...|++|+++|.+.+... + .....+..+.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 6899999999999999999999999999998765210 0 12235677889999999
Q ss_pred EEeccCChhhhhcc--------cHHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHh
Q 043239 204 IVCCALTEETHHMI--------NKDVMTALGKEGVIINVGRGALIDEKELV-HFLVR 251 (286)
Q Consensus 204 ~~~lp~~~~t~~~i--------~~~~l~~mk~g~ilvn~srg~~vd~~al~-~al~~ 251 (286)
++|+|......+.. -+...+.++++.++|.-|+-.+=..+.+. ..|++
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 99998332222221 23456678999999999999887777444 44554
No 119
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.37 E-value=8.3e-07 Score=79.79 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=68.7
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
-|+||+|+|||||+-|.+-|..|+..|.+|.+--|..... .++ ...+.+|+.++||+|++.+|+..+ ..++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf-~V~~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGF-KVYTVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCC-EeecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 4899999999999999999999999999987665544432 233 356899999999999999996544 44666
Q ss_pred HHHHhcCCCCcEE
Q 043239 219 KDVMTALGKEGVI 231 (286)
Q Consensus 219 ~~~l~~mk~g~il 231 (286)
++.-+.|++|..+
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 7888899999853
No 120
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.37 E-value=4.9e-07 Score=82.30 Aligned_cols=116 Identities=16% Similarity=0.288 Sum_probs=88.3
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----CcccccCHHHhhc-CCCEEEEeccCChhhhhcccHHHH
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----SYPFYANVSGLAA-DSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~~~~~~l~e~l~-~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
-.+|||||+|+||+-+|+.+...|+.|...+|+.-... +...+..+.++++ +.|+|+.|+. ...+..++..--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcCc
Confidence 45899999999999999999999999999999874322 4445678888775 5999999975 3345555544457
Q ss_pred hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcC
Q 043239 223 TALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQR 270 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~ 270 (286)
+.+|.|++|+++-.-....-.++.+.|-+- .|.+-..|+.+|
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGP 172 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGP 172 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCC
Confidence 778999999999888888888888888764 455555554443
No 121
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.37 E-value=1.4e-06 Score=81.03 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=71.7
Q ss_pred HHHHHHHhccCCCEEEEECCCCCCC----------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239 160 GSEVAKRLVPFGCSIAYTSRKKKPG----------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229 (286)
Q Consensus 160 G~~~A~~l~~~g~~V~~~~r~~~~~----------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ 229 (286)
|..+|.+|...|++|++|||+.... .+.....+..+++++||+|++++|....++.++ +...+.++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 8899999999999999999977521 134445688888999999999999665467776 46788899999
Q ss_pred EEEEcCCCcccCH-HHHHHHHH
Q 043239 230 VIINVGRGALIDE-KELVHFLV 250 (286)
Q Consensus 230 ilvn~srg~~vd~-~al~~al~ 250 (286)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999987765 56666664
No 122
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.36 E-value=2.8e-06 Score=72.41 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=67.2
Q ss_pred CCcccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCC--------Cccc----ccCHHHhhcCCCEEEEec
Q 043239 141 PLGSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGV--------SYPF----YANVSGLAADSDVLIVCC 207 (286)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~~~----~~~l~e~l~~aDiV~~~l 207 (286)
+.+.++.||++.|||-+. +|+++|..|...|+.|+.++.+.-... .... ..++.+.+++||+|++++
T Consensus 55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 347789999999999876 799999999999999998863221110 0000 112788999999999999
Q ss_pred cCChhhhhc-ccHHHHhcCCCCcEEEEcCCC
Q 043239 208 ALTEETHHM-INKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 208 p~~~~t~~~-i~~~~l~~mk~g~ilvn~srg 237 (286)
+ ..++ +..+. +|+|+++||+|--
T Consensus 135 G----~~~~~i~~d~---ik~GavVIDVGi~ 158 (197)
T cd01079 135 P----SPNYKVPTEL---LKDGAICINFASI 158 (197)
T ss_pred C----CCCCccCHHH---cCCCcEEEEcCCC
Confidence 8 3455 77766 4799999999844
No 123
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=1.1e-06 Score=78.85 Aligned_cols=96 Identities=16% Similarity=0.305 Sum_probs=68.6
Q ss_pred CEEEEEcCChHHHHHHHHhccCC---CEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG---CSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g---~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++|+|||+|.||+.+++.+...| .+|.+++|+.+... +.....+..+++.++|+|++|+|.. ....++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence 58999999999999999999888 68999999865421 2334567788889999999999833 344443 2
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 220 DVMTALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
+..+.+ +.++|++.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 333333 46788886653 5566666654
No 124
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=2.5e-06 Score=78.06 Aligned_cols=122 Identities=13% Similarity=0.171 Sum_probs=103.4
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHh---hcCCCEEEEeccCChhhhh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGL---AADSDVLIVCCALTEETHH 215 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~---l~~aDiV~~~lp~~~~t~~ 215 (286)
..||+||++.||+.++......|+.|.+|+|+.++.. ......|++++ ++.-.+|++.+........
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4799999999999999999999999999999887643 12345678776 4667888888876666666
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS 271 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~ 271 (286)
+| ++..++|.+|-++||-+..+.-|+..-.+.|.+..|-+.+.-|...|..+..+
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~G 141 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYG 141 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccC
Confidence 66 57888999999999999999999999999999999999999999999765555
No 125
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.31 E-value=2.6e-06 Score=76.32 Aligned_cols=97 Identities=23% Similarity=0.436 Sum_probs=66.1
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCC----EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGC----SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT 223 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~----~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~ 223 (286)
.++|+|||+|+||+++++.|...+. ++++++|+.+.. +.....+..+++.+||+|++|+| ......++. +..+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~ 79 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKP 79 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHh
Confidence 4689999999999999999987662 488998876543 22334577788889999999988 344555553 4444
Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 224 ALGKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 224 ~mk~g~ilvn~srg~~vd~~al~~al~ 250 (286)
.++++ .+|.+.-| +..+.+.+.+.
T Consensus 80 ~l~~~-~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 80 YLGSK-LLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred hccCC-EEEEEeCC--ccHHHHHHHcC
Confidence 55554 44555444 33555555543
No 126
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.28 E-value=3.6e-06 Score=69.97 Aligned_cols=81 Identities=25% Similarity=0.449 Sum_probs=58.3
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.||++.|||-+. +|++++..|...|+.|+...... .++++.+++||+|+.+++ ..++|..+
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~- 96 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKAD- 96 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GG-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----cccccccc-
Confidence 3469999999999985 99999999999999998876432 578999999999999986 35567655
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 043239 222 MTALGKEGVIINVGRGAL 239 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~ 239 (286)
.+|+|+++||++.-..
T Consensus 97 --~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 97 --WIKPGAVVIDVGINYV 112 (160)
T ss_dssp --GS-TTEEEEE--CEEE
T ss_pred --cccCCcEEEecCCccc
Confidence 4689999999986655
No 127
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.27 E-value=8.9e-07 Score=84.68 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=72.3
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------Cc--ccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SY--PFYANVSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
.+.|++++|+|+|.||..+++.|...| .+|++++|+.++.. +. ....++.+.+.++|+|+.|++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 58999999876432 11 1234677888999999999653 456
Q ss_pred cccHHHHhcCC----CCcEEEEcCCCcccCH
Q 043239 216 MINKDVMTALG----KEGVIINVGRGALIDE 242 (286)
Q Consensus 216 ~i~~~~l~~mk----~g~ilvn~srg~~vd~ 242 (286)
+++++.++.+. ...+++|++...=+|.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 78888776652 2459999986554554
No 128
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.27 E-value=1.5e-06 Score=79.62 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=69.4
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-------------C------CcccccCHHHhhcCCCEEEEeccC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------V------SYPFYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~------~~~~~~~l~e~l~~aDiV~~~lp~ 209 (286)
++|+|+|.|..|.++|+.|...|++|..|.|.++.. . ......++.++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 589999999999999999999999999999864311 1 12345789999999999999999
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239 210 TEETHHMINKDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg~ 238 (286)
+...+.++. +.-..++++..+|+++-|=
T Consensus 81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGi 108 (329)
T COG0240 81 SQALREVLR-QLKPLLLKDAIIVSATKGL 108 (329)
T ss_pred hHHHHHHHH-HHhhhccCCCeEEEEeccc
Confidence 455555543 3335678999999999773
No 129
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.26 E-value=3.7e-06 Score=76.00 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=64.5
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||.|. +|+++|..|...|+.|+++.+. ..++++.+++||+|+++++. .+++..+
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvi~avG~----p~~v~~~- 219 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------TKNLRHHVRNADLLVVAVGK----PGFIPGE- 219 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC---------CCCHHHHHhhCCEEEEcCCC----cccccHH-
Confidence 3468999999999999 9999999999999999987643 24789999999999999852 3356654
Q ss_pred HhcCCCCcEEEEcC
Q 043239 222 MTALGKEGVIINVG 235 (286)
Q Consensus 222 l~~mk~g~ilvn~s 235 (286)
.+|+|+++||+|
T Consensus 220 --~vk~gavVIDvG 231 (285)
T PRK10792 220 --WIKPGAIVIDVG 231 (285)
T ss_pred --HcCCCcEEEEcc
Confidence 468999999998
No 130
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.25 E-value=4.1e-06 Score=74.00 Aligned_cols=101 Identities=14% Similarity=0.238 Sum_probs=68.9
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCC---CE-EEEECCC-CCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFG---CS-IAYTSRK-KKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g---~~-V~~~~r~-~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
++++|+|||.|.||+.+++.+...| .+ +++++|+ .+... +.....+.+++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987765 23 6777764 22211 2334567888999999999999943 3344
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
++ ++.-+.++ +.++|+++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 43 33333344 5689999766 4555676666543
No 131
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.25 E-value=1.2e-06 Score=79.02 Aligned_cols=98 Identities=14% Similarity=0.253 Sum_probs=77.6
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Ccc------cccCHHHhhcCCCEEEEe--ccCC
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYP------FYANVSGLAADSDVLIVC--CALT 210 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~------~~~~l~e~l~~aDiV~~~--lp~~ 210 (286)
....-+|.|||.|.+|..-|+.+..+|.+|+..+++.++.. +.+ ....+++.+.++|+||-+ +|..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 46777999999999999999999999999999998865532 111 235678899999999876 4433
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcC--CCcccCHH
Q 043239 211 EETHHMINKDVMTALGKEGVIINVG--RGALIDEK 243 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~s--rg~~vd~~ 243 (286)
....++.++++++||||+++||++ .|+++.+.
T Consensus 245 -kaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~ 278 (371)
T COG0686 245 -KAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETS 278 (371)
T ss_pred -CCceehhHHHHHhcCCCcEEEEEEEcCCCceecc
Confidence 345578899999999999999996 66666543
No 132
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.25 E-value=2.4e-06 Score=76.88 Aligned_cols=102 Identities=22% Similarity=0.328 Sum_probs=70.4
Q ss_pred CEEEEEcCChHHHHHHHHhccC--CCEE-EEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF--GCSI-AYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V-~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++|||||+|.||+.+++.+... ++++ .++|++.++.. +...+.++++++.++|+|+.|.|.. ....
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~---- 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEE---- 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHH----
Confidence 4899999999999999998875 4664 57888765322 2334678999989999999998732 2221
Q ss_pred HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhCCee
Q 043239 220 DVMTALGKEGVIINVGRGALID---EKELVHFLVRGSLV 255 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd---~~al~~al~~~~i~ 255 (286)
-....++.|.-++..+.|.+.| .+.|.++.++++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 1223345566566677787766 34677777776644
No 133
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.24 E-value=9e-06 Score=71.48 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=76.0
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCE---EEEECCCC----CCCC-----------Cc--ccc-cCHHHhhcCCCE
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCS---IAYTSRKK----KPGV-----------SY--PFY-ANVSGLAADSDV 202 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~---V~~~~r~~----~~~~-----------~~--~~~-~~l~e~l~~aDi 202 (286)
.++.++++.|+|.|.+|..+|+.|...|++ |+++||+. ++.. .. ... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 458889999999999999999999999984 99999983 3210 01 111 367788889999
Q ss_pred EEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 203 LIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 203 V~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
|+.+.| .++++++.++.|.++.++++++.. ..+.-+.++.+.|
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~g 143 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAG 143 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcC
Confidence 999875 467888899999999999999844 3444444444443
No 134
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.23 E-value=1.9e-06 Score=79.32 Aligned_cols=94 Identities=23% Similarity=0.345 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC------Ccc--cccCHHHhhcCCCEEEEeccCChhhhhc
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV------SYP--FYANVSGLAADSDVLIVCCALTEETHHM 216 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~------~~~--~~~~l~e~l~~aDiV~~~lp~~~~t~~~ 216 (286)
+.+++|+|+|.|.||+.+++.|...| .+|.+++|+.++.. +.. ...++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999866 47999999875431 211 124567788999999999985433 222
Q ss_pred ccHHHHhcC-CCCcEEEEcCCCcccC
Q 043239 217 INKDVMTAL-GKEGVIINVGRGALID 241 (286)
Q Consensus 217 i~~~~l~~m-k~g~ilvn~srg~~vd 241 (286)
+ +..+... +++.++||++...-++
T Consensus 255 ~-~~~~~~~~~~~~~viDlavPrdi~ 279 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVPRDIE 279 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence 2 2333322 3578999999654344
No 135
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=5.9e-06 Score=74.95 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|+|.|. +|++++..|...|++|+++++. ..++.+.++++|+|+++++. ...+..+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG~----~~~v~~~~ 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVGK----PELIKKDW 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccCC----CCcCCHHH
Confidence 3468999999999998 9999999999999999988762 34688888999999999862 22566654
Q ss_pred HhcCCCCcEEEEcCCC
Q 043239 222 MTALGKEGVIINVGRG 237 (286)
Q Consensus 222 l~~mk~g~ilvn~srg 237 (286)
+|+|++++|++-.
T Consensus 221 ---lk~gavViDvg~n 233 (283)
T PRK14192 221 ---IKQGAVVVDAGFH 233 (283)
T ss_pred ---cCCCCEEEEEEEe
Confidence 6899999999744
No 136
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=4.4e-06 Score=75.47 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=66.5
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-| .+|+++|..|...|+.|+++... ..++.+.+++||+|+++++ ..+++..++
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---------t~~l~~~~~~ADIvV~AvG----~p~~i~~~~ 218 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---------TKDLSFYTQNADIVCVGVG----KPDLIKASM 218 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---------cHHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 346899999999999 99999999999999999887431 2467889999999999986 455777776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+ |+|+++||+|--.
T Consensus 219 v---k~GavVIDvGi~~ 232 (285)
T PRK14191 219 V---KKGAVVVDIGINR 232 (285)
T ss_pred c---CCCcEEEEeeccc
Confidence 5 8999999998543
No 137
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=3.7e-06 Score=75.77 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=66.7
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|+|.+ ..|+++|..|...|+.|+...+. ..++.+.+++||+|+.+++. .+++.+++
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~---------t~~L~~~~~~ADIvI~Avgk----~~lv~~~~ 213 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK---------TENLKAELRQADILVSAAGK----AGFITPDM 213 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC---------hhHHHHHHhhCCEEEECCCc----ccccCHHH
Confidence 346999999999999 99999999999999999876643 24789999999999999863 26788877
Q ss_pred HhcCCCCcEEEEcCCC
Q 043239 222 MTALGKEGVIINVGRG 237 (286)
Q Consensus 222 l~~mk~g~ilvn~srg 237 (286)
+ |+|+++||+|-.
T Consensus 214 v---k~GavVIDVgi~ 226 (279)
T PRK14178 214 V---KPGATVIDVGIN 226 (279)
T ss_pred c---CCCcEEEEeecc
Confidence 4 999999999843
No 138
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=5.2e-06 Score=75.03 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=65.1
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||.|. +|+++|..|...|+.|+++... ..++.+..++||+|++++.- .+++..+
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvv~AvG~----p~~i~~~- 224 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------TDDLKKYTLDADILVVATGV----KHLIKAD- 224 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------CCCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence 3468999999999999 9999999999999999887642 24789999999999998752 3467666
Q ss_pred HhcCCCCcEEEEcCC
Q 043239 222 MTALGKEGVIINVGR 236 (286)
Q Consensus 222 l~~mk~g~ilvn~sr 236 (286)
++|+|+++||+|-
T Consensus 225 --~vk~gavVIDvGi 237 (287)
T PRK14176 225 --MVKEGAVIFDVGI 237 (287)
T ss_pred --HcCCCcEEEEecc
Confidence 4689999999985
No 139
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.21 E-value=4.9e-06 Score=74.59 Aligned_cols=94 Identities=19% Similarity=0.366 Sum_probs=72.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCC----CEEEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
++|||||+|+||++++.-|.+.| .+|++.+|+.++.. +.....+..++..++|+|++++.. + .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H----hH
Confidence 58999999999999999999888 47999999887642 223356777899999999999862 2 22
Q ss_pred HHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 043239 219 KDVMTALG---KEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 219 ~~~l~~mk---~g~ilvn~srg~~vd~~al~~al~ 250 (286)
++.++.++ ++.++|.+.-| +..+.|.+++.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 45566665 68899999877 56677777775
No 140
>PLN00203 glutamyl-tRNA reductase
Probab=98.21 E-value=1.7e-06 Score=84.68 Aligned_cols=94 Identities=19% Similarity=0.333 Sum_probs=72.4
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------Cc----ccccCHHHhhcCCCEEEEeccCChh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------SY----PFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------~~----~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+.++.. +. ....++.+.+.++|+|+++.| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4789999999999999999999999997 7999999876532 11 123466778999999999865 4
Q ss_pred hhhcccHHHHhcCCC-------CcEEEEcCCCcccC
Q 043239 213 THHMINKDVMTALGK-------EGVIINVGRGALID 241 (286)
Q Consensus 213 t~~~i~~~~l~~mk~-------g~ilvn~srg~~vd 241 (286)
...++.++.++.+++ ..+|||++-..=||
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 566888888887643 24899998654343
No 141
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.20 E-value=1.6e-06 Score=73.57 Aligned_cols=110 Identities=14% Similarity=0.199 Sum_probs=75.7
Q ss_pred EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----------------------------CcccccCHHHhhcCC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------------------------SYPFYANVSGLAADS 200 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------------------------~~~~~~~l~e~l~~a 200 (286)
+|+|||.|.||..+|..+...|++|..+|++.+... ......+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999876321 011246788877 99
Q ss_pred CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccC
Q 043239 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLR 263 (286)
Q Consensus 201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~ 263 (286)
|+|+=++|..-+.+.-+-++.-+.++++++|... .+-+.-..|...+. +.=+..++=.|.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn--TSsl~i~~la~~~~-~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASN--TSSLSISELAAALS-RPERFIGMHFFN 139 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEec--CCCCCHHHHHhccC-cCceEEEEeccc
Confidence 9999999988877776767777778899987655 33456666777664 333445555564
No 142
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.20 E-value=3.5e-06 Score=78.15 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=73.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC----CCcc-----------------cccCHHHhhcCCCEEEEec
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG----VSYP-----------------FYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~----~~~~-----------------~~~~l~e~l~~aDiV~~~l 207 (286)
++|+|||.|.||..+|..|...|++|.+++|+.... .+.. ...+. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 589999999999999999999999999999865211 0110 12234 5678999999999
Q ss_pred cCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 208 ALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 208 p~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
|.. +...++ ++..+.++++.+++++..| +...+.+.+.+.+.++
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 854 445444 4566778899999988654 4445667777766544
No 143
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.19 E-value=1.9e-05 Score=64.19 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=66.2
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|+|-+ ..|+.++..|...|++|...++.. .++++.+++||+|+++++.. ++++.+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~ 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence 457899999999965 589999999999999998887532 37889999999999998743 5677666
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|||++++|++...
T Consensus 90 ---ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 ---IKPGATVINCSPTK 103 (140)
T ss_pred ---cCCCCEEEEcCCCc
Confidence 68999999998665
No 144
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.18 E-value=9.4e-06 Score=73.80 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=71.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-----------ccccCHHHhhcCCCEEEEeccCChh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-----------PFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-----------~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
++|+|||.|.||..+|..|...|++|+.++|+.+... +. ....+..++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 4799999999999999999999999999998554311 11 113445555 8899999999843 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
+..++ +...+.+.+++.+|.+..| +-..+.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 44443 3455566778888888777 33355566666555544
No 145
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.16 E-value=1.2e-06 Score=73.37 Aligned_cols=92 Identities=13% Similarity=0.280 Sum_probs=66.1
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----C---cc-----------------------cccC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----S---YP-----------------------FYAN 192 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~---~~-----------------------~~~~ 192 (286)
..+...+|.|+|.|+.|+..++.+.++|++|+.++....... . .. ....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 346778999999999999999999999999999987653211 0 00 1124
Q ss_pred HHHhhcCCCEEEEe-ccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 193 VSGLAADSDVLIVC-CALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 193 l~e~l~~aDiV~~~-lp~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
+.+.++.+|+|+++ +--.+....++.++.++.||++++|+|+|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 66788999999864 33345567789999999999999999996
No 146
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.16 E-value=8e-06 Score=76.07 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=65.7
Q ss_pred EEEEEcCChHHHHHHHHhccCC--------CEEEEECCCC-----C----------CC---CC------cccccCHHHhh
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFG--------CSIAYTSRKK-----K----------PG---VS------YPFYANVSGLA 197 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g--------~~V~~~~r~~-----~----------~~---~~------~~~~~~l~e~l 197 (286)
+|+|||.|++|.++|..|...| ++|..|.|.. + .. .+ .....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998877 8999998732 0 00 01 12336889999
Q ss_pred cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239 198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~ 238 (286)
++||+|++++| +...+.++ ++.-+.++++..+|+++-|=
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence 99999999999 34555444 45556778889999998773
No 147
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.15 E-value=3e-06 Score=80.15 Aligned_cols=95 Identities=22% Similarity=0.342 Sum_probs=73.0
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------C--cccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------S--YPFYANVSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
+|+++++.|||+|.||..+|+.|...|. +|++.+|+.++.. + +..+.++.+.+.++|+|+++. .+...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissT---sa~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISST---SAPHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEec---CCCcc
Confidence 4899999999999999999999999996 7999999987653 2 234567778899999999985 34566
Q ss_pred cccHHHHhcC---CCCcEEEEcCCCcccCH
Q 043239 216 MINKDVMTAL---GKEGVIINVGRGALIDE 242 (286)
Q Consensus 216 ~i~~~~l~~m---k~g~ilvn~srg~~vd~ 242 (286)
++..+.+... ++.-++||++=..-++.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 7777655543 12258999986554444
No 148
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.13 E-value=3.2e-06 Score=81.00 Aligned_cols=95 Identities=22% Similarity=0.339 Sum_probs=70.9
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------C--cccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------S--YPFYANVSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
.+.|++|+|+|.|.||+.+++.|...|+ +|++++|+.++.. + .....++.+.+.++|+|+.++|. ...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence 3789999999999999999999999998 7999999875532 1 11224566778999999999764 355
Q ss_pred cccHHHHhcC-----CCCcEEEEcCCCcccCH
Q 043239 216 MINKDVMTAL-----GKEGVIINVGRGALIDE 242 (286)
Q Consensus 216 ~i~~~~l~~m-----k~g~ilvn~srg~~vd~ 242 (286)
++..+.++.+ ..+.++||++-..-+|.
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence 6777766554 24579999986543443
No 149
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.13 E-value=9.6e-06 Score=73.89 Aligned_cols=103 Identities=22% Similarity=0.415 Sum_probs=72.0
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----CCc-------------ccccCHHHhhcCCCEEEEeccCC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----VSY-------------PFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~~~-------------~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
++|+|+|.|.||..+|..|...|++|+.++| .+.. .+. ....+.++....+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999999999999998 3221 110 01235566668899999999843
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
++..++ +...+.++++.++|.+..| +-..+.+.+.+.+.++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 444443 3455556778888888766 34466677777655543
No 150
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.12 E-value=2.4e-05 Score=76.39 Aligned_cols=178 Identities=15% Similarity=0.204 Sum_probs=105.2
Q ss_pred CceEEEEeCCCCCCHHHhccCCC-ccEEEEcCCCCCcCChhHHhhcCeEEEecCCCC----C------cChHHHHHHHHH
Q 043239 48 SVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILVTNAGNAF----S------EDGADYVVGLLV 116 (286)
Q Consensus 48 ~~d~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----~------~~vAE~~l~~~L 116 (286)
++|+|+.- ...+.+.++.++. -.+|+......|.=-++.+.++||++....... + .++|+.
T Consensus 65 ~~diilkV--~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~I------ 136 (509)
T PRK09424 65 QSDIILKV--NAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANI------ 136 (509)
T ss_pred cCCEEEEe--CCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhh------
Confidence 57887742 1234555666664 445555555444434677889999987522211 1 223322
Q ss_pred HHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc--
Q 043239 117 DVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-- 189 (286)
Q Consensus 117 ~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-- 189 (286)
+.+|-+.++.+.. +.... +.........+.+|.|+|.|.+|...++.++.+|.+|.++|+++++.+ +...
T Consensus 137 AGy~Av~~aa~~~--~~~~~-g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~ 213 (509)
T PRK09424 137 AGYRAVIEAAHEF--GRFFT-GQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLE 213 (509)
T ss_pred hHHHHHHHHHHHh--cccCC-CceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEE
Confidence 2233333332221 11110 000011245699999999999999999999999999999998775422 2110
Q ss_pred c-----------------cC--------HHHhhcCCCEEEEeccCChh-hhhcccHHHHhcCCCCcEEEEcCC
Q 043239 190 Y-----------------AN--------VSGLAADSDVLIVCCALTEE-THHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 190 ~-----------------~~--------l~e~l~~aDiV~~~lp~~~~-t~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
. .+ +.+.++.+|+|+.+...... ...++.++.++.||+|+++||+|-
T Consensus 214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 01 11223579999998753221 233556889999999999999984
No 151
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=98.10 E-value=1.1e-05 Score=74.68 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCCcccccCHH----HhhcCCCEEEEeccCChhhhhcccH
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPFYANVS----GLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~~~~~l~----e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++.++++.|||.|.||+.+++.|...|. +|++.+|+..... +.++. +...++|+|+.|...|.....++..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 5889999999999999999999999996 6999999975422 22221 4567899999874334445566777
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH
Q 043239 220 DVMTALGKEGVIINVGRGALIDE 242 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd~ 242 (286)
+.++..++ -+|||.+=..=||.
T Consensus 247 ~~~~~~~~-r~~iDLAvPRdId~ 268 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVPRTFPW 268 (338)
T ss_pred HHHhhccC-cEEEEecCCCCCcc
Confidence 76655433 48999986655553
No 152
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=1.5e-05 Score=71.84 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=65.0
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-| .+|+++|..|...|+.|+..... ..++.+.+++||+|++++. ..+++..++
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~---------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~ 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF---------TKDLKAHTKKADIVIVGVG----KPNLITEDM 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CcCHHHHHhhCCEEEEecC----cccccCHHH
Confidence 347999999999999 89999999999999999876431 2468899999999999986 455777766
Q ss_pred HhcCCCCcEEEEcCC
Q 043239 222 MTALGKEGVIINVGR 236 (286)
Q Consensus 222 l~~mk~g~ilvn~sr 236 (286)
.|+|+++||+|-
T Consensus 219 ---vk~gavvIDvGi 230 (281)
T PRK14183 219 ---VKEGAIVIDIGI 230 (281)
T ss_pred ---cCCCcEEEEeec
Confidence 479999999983
No 153
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=3e-05 Score=70.06 Aligned_cols=80 Identities=23% Similarity=0.485 Sum_probs=65.7
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.||++.|||-+. +|+++|..|...|+.|+++... ..++.+.+++||+|+++++ ..+++..++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG----~~~~i~~~~ 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------TKDLPQVAKEADILVVATG----LAKFVKKDY 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 4479999999999765 7999999999999999876432 2468999999999999987 355677766
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 219 ---vk~GavVIDvGin~ 232 (284)
T PRK14170 219 ---IKPGAIVIDVGMDR 232 (284)
T ss_pred ---cCCCCEEEEccCcc
Confidence 57999999998554
No 154
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.07 E-value=1.4e-05 Score=74.94 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCEEEEEcCChHHHHHHHHhccCC-------CEEEEECCCCCC---------------C---CC------cccccCHHHh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFG-------CSIAYTSRKKKP---------------G---VS------YPFYANVSGL 196 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g-------~~V~~~~r~~~~---------------~---~~------~~~~~~l~e~ 196 (286)
.++|+|||.|.+|.++|..|...| ++|..|.|+.+. . .+ .....++.++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 358999999999999999998766 799999887641 0 01 1224678899
Q ss_pred hcCCCEEEEeccCChhhhhcccHHHHh--cCCCCcEEEEcCCCc
Q 043239 197 AADSDVLIVCCALTEETHHMINKDVMT--ALGKEGVIINVGRGA 238 (286)
Q Consensus 197 l~~aDiV~~~lp~~~~t~~~i~~~~l~--~mk~g~ilvn~srg~ 238 (286)
+++||+|++++| ....+.++ ++.-+ .++++.++|+++-|=
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl-~~l~~~~~l~~~~~iIS~aKGI 132 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVL-SQIKENNNLKKHARAISLTKGI 132 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHH-HHhccccccCCCCEEEEEeCCc
Confidence 999999999999 34445444 23333 566778999998773
No 155
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.05 E-value=1.1e-05 Score=74.25 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCCEEEEEcCChHHHHHHHHhcc-CC-CEEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVP-FG-CSIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~-~g-~~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
..++++|||+|.+|+.+++.+.. ++ .+|.+|+|+.++.. + .....++++++++||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46799999999999999985543 44 58999999876532 1 223468889999999998887643
Q ss_pred hhcccHHHHhcCCCCcEEEEcC
Q 043239 214 HHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~s 235 (286)
..++..+ .+++|+ +||+.
T Consensus 201 ~pvl~~~---~l~~g~-~i~~i 218 (314)
T PRK06141 201 EPLVRGE---WLKPGT-HLDLV 218 (314)
T ss_pred CCEecHH---HcCCCC-EEEee
Confidence 5666654 468998 45543
No 156
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=2.3e-05 Score=70.77 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=64.9
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+++++ ..+++..++
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------T~~l~~~~~~ADIvIsAvG----k~~~i~~~~ 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------TQNLPSIVRQADIIVGAVG----KPEFIKADW 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence 3468999999999765 8999999999999999987642 2478899999999999987 456777766
Q ss_pred HhcCCCCcEEEEcCC
Q 043239 222 MTALGKEGVIINVGR 236 (286)
Q Consensus 222 l~~mk~g~ilvn~sr 236 (286)
.|+|+++||+|-
T Consensus 221 ---ik~gavVIDvGi 232 (284)
T PRK14177 221 ---ISEGAVLLDAGY 232 (284)
T ss_pred ---cCCCCEEEEecC
Confidence 589999999985
No 157
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=3.1e-05 Score=70.08 Aligned_cols=81 Identities=28% Similarity=0.496 Sum_probs=66.7
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+ .+|+++|..|...|+.|+++... ..++.+.+++||+|+.+++ ..++++.++
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 219 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM 219 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 446999999999965 58999999999999999877431 2478899999999999986 345788877
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 043239 222 MTALGKEGVIINVGRGAL 239 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~ 239 (286)
+ |+|+++||+|.-.+
T Consensus 220 i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 220 V---KEGAVVIDVGVNRL 234 (284)
T ss_pred c---CCCCEEEEeecccc
Confidence 5 89999999986653
No 158
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=2.7e-05 Score=70.33 Aligned_cols=80 Identities=29% Similarity=0.487 Sum_probs=65.6
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|+++|..|...|+.|+.+... ..++.+.+++||+|+++++ ..++++.++
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~---------T~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------TRNLKQLTKEADILVVAVG----VPHFIGADA 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 3468999999999765 7999999999999999877432 1368899999999999987 355787776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 218 ---vk~GavVIDvGin~ 231 (282)
T PRK14169 218 ---VKPGAVVIDVGISR 231 (282)
T ss_pred ---cCCCcEEEEeeccc
Confidence 58999999998544
No 159
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.02 E-value=2.5e-05 Score=70.48 Aligned_cols=78 Identities=22% Similarity=0.403 Sum_probs=64.9
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|+++|..|...|+.|+.+.+. ..++++..++||+|++++. ..+++..++
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~---------T~nl~~~~~~ADIvIsAvG----kp~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---------TKDLSLYTRQADLIIVAAG----CVNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence 3468999999999765 7999999999999999876542 2468999999999999987 456787776
Q ss_pred HhcCCCCcEEEEcCC
Q 043239 222 MTALGKEGVIINVGR 236 (286)
Q Consensus 222 l~~mk~g~ilvn~sr 236 (286)
.|+|+++||+|-
T Consensus 219 ---vk~GavVIDvGi 230 (282)
T PRK14166 219 ---VKEGVIVVDVGI 230 (282)
T ss_pred ---cCCCCEEEEecc
Confidence 589999999983
No 160
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3.1e-05 Score=70.46 Aligned_cols=81 Identities=17% Similarity=0.412 Sum_probs=66.1
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|+++|..|...|+.|+.+... ..++++.+++||+|+++++ ..+++..++
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------TQDLASITREADILVAAAG----RPNLIGAEM 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 4478999999999765 7999999999999999877432 2378899999999999987 345777766
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 043239 222 MTALGKEGVIINVGRGAL 239 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~ 239 (286)
+|+|+++||+|--.+
T Consensus 220 ---ik~gavVIDvGin~~ 234 (297)
T PRK14186 220 ---VKPGAVVVDVGIHRL 234 (297)
T ss_pred ---cCCCCEEEEeccccc
Confidence 589999999985553
No 161
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.00 E-value=5.7e-06 Score=74.90 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=72.2
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCCC----cc-----cc-cCHHHhhcCCCEEEEeccCChhh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGVS----YP-----FY-ANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~~----~~-----~~-~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
.+.++++.|+|.|.+|++++..|...| .+|++++|+.++... .. .. .++.+.+.++|+|+.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 477899999999999999999999999 589999998765321 00 11 13346778899999999865321
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
..-...-....++++.+++|+.-.. ..+ .|+++.++.+
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G 237 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQG 237 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCc
Confidence 1101111234568899999997644 344 4444444443
No 162
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.99 E-value=9e-06 Score=77.60 Aligned_cols=92 Identities=16% Similarity=0.309 Sum_probs=68.6
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------C---cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------S---YPFYANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~---~~~~~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
.+.|+++.|||.|.||+.+++.|...|. ++++++|+.++.. + ...+.++.+.+.++|+|++|.+. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 4789999999999999999999999996 7999999976432 1 11235567789999999999753 45
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccC
Q 043239 215 HMINKDVMTALGKEGVIINVGRGALID 241 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~srg~~vd 241 (286)
.+|..+... .+..+|||.+=..-||
T Consensus 255 ~vi~~~~~~--~~~~~~iDLavPRdid 279 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISIPQALD 279 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCCCCCCC
Confidence 667766543 2346889998554333
No 163
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=3.1e-05 Score=70.26 Aligned_cols=80 Identities=16% Similarity=0.378 Sum_probs=65.6
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|++++..|...|+.|+++... ..++.+.+++||+|+++++ ..+++..++
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~---------T~~l~~~~~~ADIvVsAvG----kp~~i~~~~ 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA---------TRDLADYCSKADILVAAVG----IPNFVKYSW 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 3468999999999765 7999999999999999877642 2468899999999999987 355677776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
.|+|+++||+|--.
T Consensus 222 ---ik~gaiVIDVGin~ 235 (294)
T PRK14187 222 ---IKKGAIVIDVGINS 235 (294)
T ss_pred ---cCCCCEEEEecccc
Confidence 47999999997443
No 164
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=3e-05 Score=69.99 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=64.6
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|+++|..|...|+.|+.+... ..++.+..++||+|+++++ ..+++..++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~---------T~dl~~~~k~ADIvIsAvG----kp~~i~~~~ 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF---------TTDLKSHTTKADILIVAVG----KPNFITADM 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC---------CCCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence 3468999999999765 7999999999999999887542 2378889999999999987 355677766
Q ss_pred HhcCCCCcEEEEcCC
Q 043239 222 MTALGKEGVIINVGR 236 (286)
Q Consensus 222 l~~mk~g~ilvn~sr 236 (286)
.|+|+++||+|-
T Consensus 220 ---vk~gavVIDvGi 231 (282)
T PRK14180 220 ---VKEGAVVIDVGI 231 (282)
T ss_pred ---cCCCcEEEEecc
Confidence 579999999984
No 165
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.99 E-value=2.4e-05 Score=70.55 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------CcccccCHHH-hhcCCCEEEEeccCCh--hh
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFYANVSG-LAADSDVLIVCCALTE--ET 213 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~l~e-~l~~aDiV~~~lp~~~--~t 213 (286)
..+++++|+|.|.+|++++..|...|++|.+++|+.++.. +.....++++ ...++|+|++++|..- ..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 4578999999999999999999999999999999865421 1111223443 3357999999999652 11
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 214 HH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 214 ~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
.. .+. .+.++++.+++|+...... + .|+++.++.++.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~~ 232 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGTK 232 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCCe
Confidence 11 122 3457899999999876643 3 577777776554
No 166
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.98 E-value=3.1e-05 Score=70.43 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=65.8
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|+++|..|...|+.|+.+... ..++++.+++||+|++++.. .+++..+.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~ 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------TPDPESIVREADIVIAAAGQ----AMMIKGDW 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 3468999999999765 7999999999999999987542 24689999999999999863 46787766
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 229 ---vk~gavVIDvGin~ 242 (299)
T PLN02516 229 ---IKPGAAVIDVGTNA 242 (299)
T ss_pred ---cCCCCEEEEeeccc
Confidence 58999999998543
No 167
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=3.6e-05 Score=69.36 Aligned_cols=80 Identities=21% Similarity=0.440 Sum_probs=65.7
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+. +|++++..|...|+.|+.+... ..++.+..++||+|+++++ ..+++..++
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 219 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------TKNLKEVCKKADILVVAIG----RPKFIDEEY 219 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence 3468999999999765 7999999999999999887642 2378999999999999987 355787776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 220 ---ik~gavVIDvGin~ 233 (278)
T PRK14172 220 ---VKEGAIVIDVGTSS 233 (278)
T ss_pred ---cCCCcEEEEeeccc
Confidence 58999999997433
No 168
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=3.7e-05 Score=69.59 Aligned_cols=76 Identities=24% Similarity=0.489 Sum_probs=63.7
Q ss_pred ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
.++.||++.|||-+. +|++++..|...|+.|+.+... ..++.+.+++||+|++++. ..+++..++
T Consensus 155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------T~~L~~~~~~ADIvV~AvG----kp~~i~~~~- 220 (288)
T PRK14171 155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------THNLSSITSKADIVVAAIG----SPLKLTAEY- 220 (288)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CCCccCHHH-
Confidence 468999999999765 7999999999999999876532 2468999999999999987 346787766
Q ss_pred hcCCCCcEEEEcC
Q 043239 223 TALGKEGVIINVG 235 (286)
Q Consensus 223 ~~mk~g~ilvn~s 235 (286)
+|+|+++||+|
T Consensus 221 --vk~GavVIDvG 231 (288)
T PRK14171 221 --FNPESIVIDVG 231 (288)
T ss_pred --cCCCCEEEEee
Confidence 58999999998
No 169
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=4.1e-05 Score=69.11 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=65.1
Q ss_pred ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
.++.|+++.|||-+. +|++++.+|...|+.|+.+... ..++++.+++||+|+++++ ..+++..++
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------T~nl~~~~~~ADIvI~AvG----k~~~i~~~~- 218 (282)
T PRK14182 153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------TADLAGEVGRADILVAAIG----KAELVKGAW- 218 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH-
Confidence 468999999999765 7999999999989999887542 2468899999999999987 356787766
Q ss_pred hcCCCCcEEEEcCCCc
Q 043239 223 TALGKEGVIINVGRGA 238 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~ 238 (286)
.|+|+++||+|--.
T Consensus 219 --ik~gaiVIDvGin~ 232 (282)
T PRK14182 219 --VKEGAVVIDVGMNR 232 (282)
T ss_pred --cCCCCEEEEeecee
Confidence 47999999998444
No 170
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.95 E-value=1.7e-05 Score=67.77 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=67.2
Q ss_pred cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC----------Cc-------ccccCHHHhhcCCCEEE
Q 043239 143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SY-------PFYANVSGLAADSDVLI 204 (286)
Q Consensus 143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~-------~~~~~l~e~l~~aDiV~ 204 (286)
+..++++++.|+|. |.+|+.+++.|...|++|.+++|+.++.. +. ....++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 34578899999995 99999999999999999999998764321 00 01123457788999999
Q ss_pred EeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239 205 VCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDE 242 (286)
Q Consensus 205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~ 242 (286)
.+.|....+ .+ ..-...+++.+++|+.+...++.
T Consensus 103 ~at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 103 AAGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred ECCCCCcee--ch--hhhcccCceeEEEEccCCCCCCc
Confidence 998855431 11 12223456789999987776544
No 171
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.95 E-value=3.5e-05 Score=71.47 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=65.6
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+.+++||+|+.++. ..+++..++
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~ 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------TKNPEEITREADIIISAVG----QPNMVRGSW 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------CCCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence 3468999999999765 7999999999999999877532 2478999999999999987 456787776
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
.|+|+++||+|--.
T Consensus 293 ---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 ---IKPGAVVIDVGINP 306 (364)
T ss_pred ---cCCCCEEEeccccc
Confidence 58999999998433
No 172
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.95 E-value=1.9e-05 Score=73.07 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=64.2
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-C-CCEEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-F-GCSIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~-g~~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
-+++||||+|.+|+..++.+.. + ..+|.+|+|+.++.. + ...+.+.++++++||+|++|+|. ..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 4689999999999997776654 2 347999999877532 1 23357899999999999999875 35
Q ss_pred hcccHHHHhcCCCCcEEEEcCCC
Q 043239 215 HMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~srg 237 (286)
.++..+. +|||+.+..+|.-
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGAD 224 (325)
T ss_pred cEecHHH---cCCCCEEEecCCC
Confidence 6776554 5899999989743
No 173
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.93 E-value=3.8e-05 Score=70.90 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.||++.|||-+. +|+++|..|...|+.|+..... ..++.+..++||+|+.++. ..+++..++
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~---------T~nl~~~~~~ADIvIsAvG----kp~~v~~d~ 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF---------TKDPEQITRKADIVIAAAG----IPNLVRGSW 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------CCCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 4469999999999765 7999999999999999876432 1368899999999999987 355787766
Q ss_pred HhcCCCCcEEEEcCCCc
Q 043239 222 MTALGKEGVIINVGRGA 238 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~ 238 (286)
+|+|+++||+|--.
T Consensus 276 ---vk~GavVIDVGin~ 289 (345)
T PLN02897 276 ---LKPGAVVIDVGTTP 289 (345)
T ss_pred ---cCCCCEEEEccccc
Confidence 58999999998543
No 174
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.93 E-value=3.3e-05 Score=71.33 Aligned_cols=88 Identities=16% Similarity=0.283 Sum_probs=62.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC-------------CCC------cccccCHHHhh-cCCCEEEEecc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-------------GVS------YPFYANVSGLA-ADSDVLIVCCA 208 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~-------------~~~------~~~~~~l~e~l-~~aDiV~~~lp 208 (286)
++|+|||.|.||..+|..|...|++|..|+|+.+. ..+ .....++.+.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 47999999999999999999999999999986531 001 11235666766 58999999998
Q ss_pred CChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 043239 209 LTEETHHMINKDVMT-ALGKEGVIINVGRGA 238 (286)
Q Consensus 209 ~~~~t~~~i~~~~l~-~mk~g~ilvn~srg~ 238 (286)
. ..+..++ ++..+ .++++..+|.+..|=
T Consensus 81 s-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 T-QQLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 3 4455544 33444 667777777776663
No 175
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=5.1e-05 Score=68.73 Aligned_cols=81 Identities=25% Similarity=0.461 Sum_probs=66.2
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.++.|+++.|||-+ .+|+++|..|...|+.|+.+.+. ..++++.+++||+|++++. ..+++..++
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------TQDLPAVTRRADVLVVAVG----RPHLITPEM 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC---------CCCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 346899999999975 58999999999999999876532 2368899999999999986 346777766
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 043239 222 MTALGKEGVIINVGRGAL 239 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~ 239 (286)
+|+|+++||+|.-.+
T Consensus 217 ---vk~GavVIDVGin~~ 231 (287)
T PRK14173 217 ---VRPGAVVVDVGINRV 231 (287)
T ss_pred ---cCCCCEEEEccCccc
Confidence 489999999986553
No 176
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.92 E-value=2.9e-05 Score=75.35 Aligned_cols=103 Identities=9% Similarity=0.132 Sum_probs=75.2
Q ss_pred CEEEEEcCChHHHHHHHHhccC--CCEEEEECCCCCCCC------------C------------cccccCHHHhhcCCCE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF--GCSIAYTSRKKKPGV------------S------------YPFYANVSGLAADSDV 202 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~~~~r~~~~~~------------~------------~~~~~~l~e~l~~aDi 202 (286)
++|+|||+|.+|..+|..|... |++|+++|.+.++.. + .....+..+.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 6899999999999999999976 588999997664311 0 1112456678899999
Q ss_pred EEEeccCCh-----------hhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 203 LIVCCALTE-----------ETHHMI--NKDVMTALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 203 V~~~lp~~~-----------~t~~~i--~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
+++|+|... +...+. -++.-+.++++.++|.-|+-.+=.++.+...+.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 999997221 111221 2345667899999999999888777888887776
No 177
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=5.8e-05 Score=68.32 Aligned_cols=80 Identities=21% Similarity=0.437 Sum_probs=64.8
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
+.++.||++.|||-+. +|+++|..|... +..|+..... ..++++.+++||+|+++++ ..+++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------T~~l~~~~~~ADIvV~AvG----~p~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------SENLTEILKTADIIIAAIG----VPLFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence 3468999999999765 799999999987 7888876532 2378999999999999987 34678
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 043239 218 NKDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~ 238 (286)
..++ +|+|+++||+|--.
T Consensus 215 ~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 215 KEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CHHH---cCCCCEEEEecccc
Confidence 7776 57999999998544
No 178
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=4.2e-05 Score=71.27 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=64.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-------------C-C------cccccCHHHhhcCCCEEEEecc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------V-S------YPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~-~------~~~~~~l~e~l~~aDiV~~~lp 208 (286)
++|+|||.|.||..+|..|...| .|..|.++++.. . + .....++.+.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 68999999999999999999988 577776653211 0 1 1123577788999999999999
Q ss_pred CChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 043239 209 LTEETHHMINKDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 209 ~~~~t~~~i~~~~l~~mk~g~ilvn~srg~ 238 (286)
+..++.++ ++..+.++++..+|++..|=
T Consensus 87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 44555554 34556678888899998763
No 179
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.88 E-value=2.9e-05 Score=72.06 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=71.2
Q ss_pred CcccCCCCEEEEEcC-ChHHHHHHHHhcc-CCC-EEEEECCCCCCCCC------cccccCHHHhhcCCCEEEEeccCChh
Q 043239 142 LGSTLGGKRVGIVGL-GSIGSEVAKRLVP-FGC-SIAYTSRKKKPGVS------YPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 142 ~~~~l~g~~vgIiG~-G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~~------~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
++.++.+++|.|+|. |.||+.+++.|.. .|. +++.++|+..+... .....++++.+.++|+|+.+...
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~--- 225 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM--- 225 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence 455789999999998 8999999999974 464 88899987654321 11234677899999999876532
Q ss_pred hhh-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239 213 THH-MINKDVMTALGKEGVIINVGRGALIDE 242 (286)
Q Consensus 213 t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~ 242 (286)
... +++.+. ++++.++||+|+..=||.
T Consensus 226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 234 377764 479999999999977775
No 180
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=6.2e-05 Score=68.13 Aligned_cols=77 Identities=19% Similarity=0.388 Sum_probs=63.8
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhcc----CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVP----FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~----~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
+.++.||++.|||-+. +|++++..|.. .+++|+..... ..++.+.+++||+|+.+++ ..+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~---------t~~l~~~~~~ADIVI~AvG----~p~li 218 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR---------TPDLAEECREADFLFVAIG----RPRFV 218 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcC
Confidence 3468999999999765 79999999998 78888776532 2478999999999999985 45678
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 043239 218 NKDVMTALGKEGVIINVG 235 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~s 235 (286)
.++++ |+|+++||+|
T Consensus 219 ~~~~v---k~GavVIDVG 233 (286)
T PRK14184 219 TADMV---KPGAVVVDVG 233 (286)
T ss_pred CHHHc---CCCCEEEEee
Confidence 87775 8999999998
No 181
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.85 E-value=9.5e-05 Score=58.18 Aligned_cols=103 Identities=19% Similarity=0.373 Sum_probs=72.8
Q ss_pred CEEEEEc----CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239 149 KRVGIVG----LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224 (286)
Q Consensus 149 ~~vgIiG----~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~ 224 (286)
|+|+||| -+..|..+.+.|++.|++|+..++......+...+.++.|.-...|++++++|. +.+..+++ +. ..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~-~~-~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD-EA-AA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-HH-HH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-HH-HH
Confidence 5899999 789999999999999999999999887777777889999855789999999983 34444443 22 23
Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239 225 LGKEGVIINVGRGALIDEKELVHFLVRGSLVELV 258 (286)
Q Consensus 225 mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~ 258 (286)
+..+.+++..+ ..++.+.+.+++..++-.+
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-EEEE
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCEEEe
Confidence 35667888887 7788899999998887543
No 182
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.85 E-value=5.8e-05 Score=67.72 Aligned_cols=81 Identities=23% Similarity=0.472 Sum_probs=66.4
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHH
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
+.+++|+++.|||-++ +|++|+..|...++.|++.... ..++.+..++||++++++- -.+++..++
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~---------T~~l~~~~k~ADIvv~AvG----~p~~i~~d~ 217 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR---------TKDLASITKNADIVVVAVG----KPHFIKADM 217 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC---------CCCHHHHhhhCCEEEEecC----Ccccccccc
Confidence 4479999999999987 5999999999999999987653 2578899999999999975 355666544
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 043239 222 MTALGKEGVIINVGRGAL 239 (286)
Q Consensus 222 l~~mk~g~ilvn~srg~~ 239 (286)
.|+|+++||++--.+
T Consensus 218 ---vk~gavVIDVGinrv 232 (283)
T COG0190 218 ---VKPGAVVIDVGINRV 232 (283)
T ss_pred ---ccCCCEEEecCCccc
Confidence 689999999985443
No 183
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=9.4e-05 Score=67.14 Aligned_cols=79 Identities=18% Similarity=0.411 Sum_probs=63.4
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
+.++.||++.|||-+. +|+++|..|... ++.|+++... ..++.+.+++||+|+++++ ..+++
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~nl~~~~~~ADIvIsAvG----kp~~i 218 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------SKNLKKECLEADIIIAALG----QPEFV 218 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence 3468999999999765 799999999876 6788876432 2478999999999999987 34567
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 043239 218 NKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg 237 (286)
..++ +|+|+++||+|--
T Consensus 219 ~~~~---vk~gavVIDvGin 235 (293)
T PRK14185 219 KADM---VKEGAVVIDVGTT 235 (293)
T ss_pred CHHH---cCCCCEEEEecCc
Confidence 7665 5899999999853
No 184
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=0.00011 Score=66.58 Aligned_cols=80 Identities=15% Similarity=0.389 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhcc--CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVP--FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~--~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
+.++.|+++.|||-+ .+|+++|..|.. .++.|+++... ..++.+.+++||+|++++.. .+++..
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGk----p~~i~~ 219 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGV----AHLVTA 219 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCC----cCccCH
Confidence 446899999999975 589999999987 68999877542 24789999999999999873 457877
Q ss_pred HHHhcCCCCcEEEEcCCCc
Q 043239 220 DVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~ 238 (286)
++ +|+|+++||+|.-.
T Consensus 220 ~~---ik~GavVIDvGin~ 235 (284)
T PRK14193 220 DM---VKPGAAVLDVGVSR 235 (284)
T ss_pred HH---cCCCCEEEEccccc
Confidence 66 58999999998555
No 185
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.81 E-value=8.5e-05 Score=67.63 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=63.5
Q ss_pred ccCCCCEEEEEcCCh-HHHHHHHHhcc----CCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhccc
Q 043239 144 STLGGKRVGIVGLGS-IGSEVAKRLVP----FGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~----~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
.++.|+++.|||-+. +|+++|..|.. .+..|+..... ..++.+.+++||+|+.+++. .+++.
T Consensus 155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~---------t~~l~~~~~~ADIvI~Avg~----~~li~ 221 (295)
T PRK14174 155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA---------TKDIPSYTRQADILIAAIGK----ARFIT 221 (295)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC---------chhHHHHHHhCCEEEEecCc----cCccC
Confidence 468999999999765 79999999876 57888766532 24688999999999999853 26788
Q ss_pred HHHHhcCCCCcEEEEcCCCc
Q 043239 219 KDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~srg~ 238 (286)
.+++ |+|+++||+|-..
T Consensus 222 ~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 222 ADMV---KPGAVVIDVGINR 238 (295)
T ss_pred HHHc---CCCCEEEEeeccc
Confidence 8876 8999999998443
No 186
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.80 E-value=7.6e-05 Score=68.63 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=73.1
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---CCcc--------------cccCHHHhhcCCCEEEEeccCC
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---VSYP--------------FYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~~~~--------------~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
.++|+|||.|.||..+|..|...|++|.++.|+.... .+.. ...+. +....+|+|++|+|..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~ 83 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTT 83 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCC
Confidence 3689999999999999999999999999888865221 0100 01122 3457899999999854
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239 211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVEL 257 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga 257 (286)
++...+ +...+.+++++.++....| +-.++.+.+.+...++.++
T Consensus 84 -~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 84 -ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred -ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 333332 3445556788888888776 3456677777766666544
No 187
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.80 E-value=3.7e-05 Score=70.53 Aligned_cols=84 Identities=8% Similarity=0.094 Sum_probs=64.9
Q ss_pred CCCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------Cccc-ccCHHHhhcCCCEEEEeccCChhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------SYPF-YANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~~~~-~~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
..++++|||.|.+|+..++.+.. ++. +|.+|+|+.++.. +... ..+++++++++|+|+++.|.. .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 45799999999999999999864 565 6999999876532 1111 457889999999999998754 5
Q ss_pred hcccHHHHhcCCCCcEEEEcCCC
Q 043239 215 HMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~srg 237 (286)
.++.. .+|||+.+..+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 67754 26999999999843
No 188
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=6e-05 Score=70.38 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=76.9
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------------------C-cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------------------S-YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------------------~-~~~~~~l~e~l~~aDiV 203 (286)
.+|||+|+|-||.++|-.+...|++|+++|.+.++.. + .+...+. +.++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence 7999999999999999999999999999998765421 0 1112233 345699999
Q ss_pred EEeccCChhhh-------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 204 IVCCALTEETH-------HMIN--KDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 204 ~~~lp~~~~t~-------~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
++|+| ||-+. .+.+ +...+.||+|.++|-=|+-.+=.++.+...+-+.
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 99998 33322 2221 3356779999999999998888889998887774
No 189
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.0001 Score=67.02 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=63.7
Q ss_pred cccCCCCEEEEEcCC-hHHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 143 GSTLGGKRVGIVGLG-SIGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G-~iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
+.++.|+++.|||-+ .+|+++|..|... ++.|+...+. ..++.+.+++||+|++++. ..+++
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------T~~l~~~~~~ADIvVsAvG----kp~~i 222 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------SKNLARHCQRADILIVAAG----VPNLV 222 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------CcCHHHHHhhCCEEEEecC----CcCcc
Confidence 446899999999965 5899999999877 6888876432 2468899999999999986 34567
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 043239 218 NKDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~ 238 (286)
..++ +|+|+++||+|.-.
T Consensus 223 ~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 223 KPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CHHH---cCCCCEEEecCCCc
Confidence 7766 58999999998443
No 190
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.78 E-value=0.00011 Score=63.34 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=70.3
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC---CCCCC---------C-----------------cc-----
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK---KKPGV---------S-----------------YP----- 188 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~---~~~~~---------~-----------------~~----- 188 (286)
..|..++|+|+|+|.+|..+|+.|...|. +++.+|+. .+... + ..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35888999999999999999999999999 69998876 21100 0 00
Q ss_pred ---cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239 189 ---FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI 240 (286)
Q Consensus 189 ---~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v 240 (286)
...++.++++++|+|+-| .++.+++..+..+....++...++...+-++-.
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~ 150 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYD 150 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEeccccCC
Confidence 012345678899999988 578889988888888888776666654444433
No 191
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.00014 Score=66.13 Aligned_cols=80 Identities=18% Similarity=0.382 Sum_probs=63.5
Q ss_pred cccCCCCEEEEEcCCh-HHHHHHHHhccC----CCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcc
Q 043239 143 GSTLGGKRVGIVGLGS-IGSEVAKRLVPF----GCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~-iG~~~A~~l~~~----g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i 217 (286)
+.++.|+++.|||-+. +|+++|..|... ++.|++.... ..++.+..++||+|++++. ..+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------T~~l~~~~~~ADIvIsAvG----kp~~i 218 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------TDDLAAKTRRADIVVAAAG----VPELI 218 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------CCCHHHHHhhCCEEEEccC----CcCcc
Confidence 3468999999999765 799999999876 7888876432 2378899999999999876 34577
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 043239 218 NKDVMTALGKEGVIINVGRGA 238 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~ 238 (286)
..++ +|+|+++||+|--.
T Consensus 219 ~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 219 DGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 7766 58999999998433
No 192
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.75 E-value=7.4e-05 Score=69.23 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCEEEEEcCChHHHHHHHHhc-cCCC-EEEEECCCCCCCC----------Cc--ccccCHHHhhcCCCEEEEeccCChhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLV-PFGC-SIAYTSRKKKPGV----------SY--PFYANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~-~~g~-~V~~~~r~~~~~~----------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
.++++|||.|.+|+..++.+. ..+. +|.+|+|+.++.. +. ....++++++++||+|+++.|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--- 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--- 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence 469999999999999999986 4675 6999999876532 11 22568899999999999998753
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q 043239 214 HHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
..++..+. +|+|+.+..++.
T Consensus 206 ~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred CcEecHHH---cCCCcEEEeeCC
Confidence 46776554 689998887763
No 193
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.68 E-value=3.1e-05 Score=59.58 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=56.2
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-CCcc-cccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-VSYP-FYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-~~~~-~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
+++|++|.|||.|.+|..-++.|...|.+|+++++..+.. .... ....+++.+.++|+|+.+.+. ++ +++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHHH
Confidence 5889999999999999999999999999999999874100 1111 123345668889999887653 22 334444
Q ss_pred hcCCCCcEEEEcC
Q 043239 223 TALGKEGVIINVG 235 (286)
Q Consensus 223 ~~mk~g~ilvn~s 235 (286)
...+.-.+++|++
T Consensus 79 ~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 79 ADARARGILVNVV 91 (103)
T ss_dssp HHHHHTTSEEEET
T ss_pred HHHhhCCEEEEEC
Confidence 4555455677774
No 194
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.68 E-value=0.0002 Score=65.50 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=83.7
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAA 198 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~ 198 (286)
-++|+|||.|.||+.+|..+...|++|..+|++.+... + .....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 36899999999999999999997799999999854211 0 01122332 689
Q ss_pred CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL 266 (286)
Q Consensus 199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~ 266 (286)
+||+|+=++|...+.+.-+-++.=...+|+++|-.- -+-+.-.++.+++ ++.=+..++=.|.+.+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASN--TSsl~it~ia~~~-~rper~iG~HFfNP~~ 146 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASN--TSSLSITELAEAL-KRPERFIGLHFFNPVP 146 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeec--cCCCCHHHHHHHh-CCchhEEEEeccCCCC
Confidence 999999999988887777767777778899876532 3335566777777 5555567787786653
No 195
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.66 E-value=9.9e-05 Score=68.35 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCCEEEEEcCChHHHHHHHHhc-cCCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLV-PFGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~-~~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+.++.. + ...+.+++++++++|+|++|.|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 3568999999999999988764 4565 6899999876532 1 123578899999999999998854
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 043239 213 THHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
..++. ..+|+|+.++.++.
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred -CcchH----HhcCCCcEEEecCC
Confidence 45554 45699999988864
No 196
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00012 Score=67.57 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=63.9
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
-++++|+|.|..++..++.+.. +.. +|.+|+|+.++.. + .....+.++++++||+|+++.+ ++.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence 4599999999999999988764 333 7999999987632 1 2235789999999999999876 346
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q 043239 215 HMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~s 235 (286)
.+++.+. +|||+.++.+|
T Consensus 205 P~~~~~~---l~~G~hi~~iG 222 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVG 222 (315)
T ss_pred ceeCHHH---cCCCcEEEecC
Confidence 7776654 68999999887
No 197
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.62 E-value=0.00017 Score=73.54 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=84.7
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|+|||.|.||..+|..+...|++|+.+|++.+... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999999999999998875421 0 1112355 45799
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
||+|+=++|...+.+.-+-++.-..++++++|... -+-+.-..|.+.+. ..=+.+++-.|.+.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~-~p~r~~g~Hff~P~ 455 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASN--TSTISISLLAKALK-RPENFCGMHFFNPV 455 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcC-CCccEEEEecCCcc
Confidence 99999999988888877777777788999887543 34466677777775 34445677777654
No 198
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.60 E-value=0.00033 Score=64.75 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=73.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCCC---------------cc--cccCHHHhhcCCCEEEEec
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGVS---------------YP--FYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~~---------------~~--~~~~l~e~l~~aDiV~~~l 207 (286)
...++|+|||.|.||..+|..+...| .++..+|++.+...+ .. ...+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 589999987654220 01 124555 779999999998
Q ss_pred --cCChh-hh--------hcccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCeeEEE--ee
Q 043239 208 --ALTEE-TH--------HMINKD---VMTALGKEGVIINVGRGALIDEKELVHFLV--RGSLVELV--LM 260 (286)
Q Consensus 208 --p~~~~-t~--------~~i~~~---~l~~mk~g~ilvn~srg~~vd~~al~~al~--~~~i~ga~--lD 260 (286)
|..+. ++ .++ ++ .+....|.+++++++...-+-...+.+.-. ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~-~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIM-KSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 33320 00 111 12 233346788999997765555555555432 45666665 55
No 199
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.60 E-value=0.0002 Score=69.79 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=69.5
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc-----ccccCHHHh--hcCCCEEEEeccCChhhhh
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY-----PFYANVSGL--AADSDVLIVCCALTEETHH 215 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~-----~~~~~l~e~--l~~aDiV~~~lp~~~~t~~ 215 (286)
+..+.+++++|+|.|.+|++++..|...|++|.+++|+.++.... ....+++++ +.++|+|++|+|....
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~--- 403 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT--- 403 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence 446789999999999999999999999999999999876542210 011122222 5789999999997642
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
+. ..+. .+++|+.-.+.... ++++.++.++.
T Consensus 404 -~~-~~l~-----~~v~D~~Y~P~~T~--ll~~A~~~G~~ 434 (477)
T PRK09310 404 -IP-KAFP-----PCVVDINTLPKHSP--YTQYARSQGSS 434 (477)
T ss_pred -ch-hHHh-----hhEEeccCCCCCCH--HHHHHHHCcCE
Confidence 22 2222 38899987764433 66777765543
No 200
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.60 E-value=6.9e-05 Score=69.07 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=55.5
Q ss_pred CEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC-----------CcccccCHHHhhcCCCEEEEeccCChhhhh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV-----------SYPFYANVSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~-----------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
++++|||.|..|...++.+.. ++. +|.+|+|++++.. ....+.+.++++++||+|+.|.|.+..+ .
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 489999999999999998765 555 7999999875421 1234678999999999999997754322 6
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcc
Q 043239 216 MINKDVMTALGKEGVIINVGRGAL 239 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~ 239 (286)
+++.+ .+++|+.++.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 77655 5789999999986544
No 201
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.60 E-value=0.00018 Score=66.06 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=74.4
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEEeccCC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
++|+|||.|.||..+|..+...|. +|+.+|...+... . .....+.++ +++||+|+++.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988776 8999998544221 0 011246666 78999999998732
Q ss_pred hh-----------hhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE--ee
Q 043239 211 EE-----------THHMINK--DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV--LM 260 (286)
Q Consensus 211 ~~-----------t~~~i~~--~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~--lD 260 (286)
.. +..++.. +.+....+.+++|+++..-=+-...+.+. +...++-|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 11 1111111 11223357889999987766666666666 6666777775 67
No 202
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00016 Score=68.07 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=73.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCC-CEEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEeccCChh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG-CSIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
++|.|||.|.+|+.+|..|.+.| .+|++.+|+.++.. .+.....+.+++++.|+|+.++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999988 89999999965432 011234677899999999999985422
Q ss_pred hhhcccHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 213 THHMINKDVM-TALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 213 t~~~i~~~~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
...+ ..++.|.-++|++-.+..- .++.+..++.++.
T Consensus 82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit 118 (389)
T COG1748 82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGIT 118 (389)
T ss_pred ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeE
Confidence 2222 3457788888988766543 6666666666554
No 203
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.56 E-value=0.00018 Score=65.45 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCCc-------------ccccCHHHhhcCCCEEEEeccCCh
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSY-------------PFYANVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~-------------~~~~~l~e~l~~aDiV~~~lp~~~ 211 (286)
+.++++.|+|.|.+|++++..|...|+ +|++++|+.++.... ....++.+.++++|+|+.+.|..-
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm 204 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM 204 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence 567899999999999999999999998 799999987653210 112345567788999999988642
Q ss_pred hh--hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 212 ET--HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 212 ~t--~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
.. ...++. +.++++.+++|+.-.. .++. ++++.++.++
T Consensus 205 ~~~~~~~~~~---~~l~~~~~v~DivY~P-~~T~-ll~~A~~~G~ 244 (284)
T PRK12549 205 AKHPGLPLPA---ELLRPGLWVADIVYFP-LETE-LLRAARALGC 244 (284)
T ss_pred CCCCCCCCCH---HHcCCCcEEEEeeeCC-CCCH-HHHHHHHCCC
Confidence 11 112332 3467888999997655 3444 4444444433
No 204
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.55 E-value=0.00014 Score=62.52 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=57.0
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCC
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK 227 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~ 227 (286)
++++|||. |.||+.+++.++..|+.|. +++||+|++|+|.. .+..++ ..+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~~i-----~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALNYI-----ESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHHHH-----HHhC-
Confidence 48999998 9999999999999999985 36899999999943 333333 2232
Q ss_pred CcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCCCCcCC
Q 043239 228 EGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTSLMCQRS 271 (286)
Q Consensus 228 g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~~~~~~ 271 (286)
.+++|++.-+. .+.++ ..++....|++++.
T Consensus 53 -~~v~Dv~SvK~----~i~~~---------~~~~vg~HPMfGp~ 82 (197)
T PRK06444 53 -NNFVEISSVKW----PFKKY---------SGKIVSIHPLFGPM 82 (197)
T ss_pred -CeEEeccccCH----HHHHh---------cCCEEecCCCCCCC
Confidence 37999975543 12222 23567777777644
No 205
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.54 E-value=0.00019 Score=65.78 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
-+++||||.|..|...++.+.. +.. +|.+|+|+.++.. + .....++++++.+||+|+.+.|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4699999999999999888775 344 7999999987532 1 22357899999999999998764 4
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q 043239 214 HHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
..++..+. +|||+.+.-+|.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 57776654 578887766653
No 206
>PRK06046 alanine dehydrogenase; Validated
Probab=97.54 E-value=0.00019 Score=66.52 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=62.2
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
-+++||||+|.+|+..++.+.. .+. +|.+|+|+.+... + ...+.+++++++ +|+|++|.|..
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 3589999999999999998874 455 5788999875422 1 123568889887 99999998854
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q 043239 214 HHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
..++..+. +|+|+.+..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 46776654 589999888873
No 207
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00035 Score=64.63 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=66.3
Q ss_pred CEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
++++|||.|..+...++.+.. ++. +|.+|+|+++... + +....|.+++++.||+|+.+.|.+ .
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~---~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST---E 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC---C
Confidence 489999999999999998875 455 7999999987542 1 245679999999999999998865 3
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 043239 215 HMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~sr 236 (286)
.++..+. +|||..|..+|.
T Consensus 208 Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred CeecHhh---cCCCcEEEecCC
Confidence 7777766 569999998884
No 208
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.51 E-value=0.00025 Score=72.53 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=85.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|+|||.|.||..+|..+...|++|+.+|++.+... + .....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999998875421 0 11123453 5799
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
||+|+=++|...+.+.-+-++.-+.++++++|.. .-+-++-..|...+.. .=+.+++-.|.+.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilas--NTSsl~i~~la~~~~~-p~r~ig~Hff~P~ 477 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIAS--NTSALPIKDIAAVSSR-PEKVIGMHYFSPV 477 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEE--cCCCCCHHHHHhhcCC-ccceEEEeccCCc
Confidence 9999999998888887777777788899988753 3444667777777754 3456778888654
No 209
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.50 E-value=0.00031 Score=71.64 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred CEEEEEcCChHHHHHHHHhc-cCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhc
Q 043239 149 KRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAA 198 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~-~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~ 198 (286)
++|+|||.|.||..+|..+. ..|++|+.+|++.+... + .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 67999999999999999988 78999999998765311 0 0112344 4679
Q ss_pred CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
+||+|+=++|...+.+.-+-++.-+.++|+++|... .+-++-..|.+.+.. .=+.+++-.|.+.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff~P~ 452 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYFSPV 452 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecCCcc
Confidence 999999999988887777777777788999987643 445667777777743 3356778877654
No 210
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.50 E-value=0.00021 Score=67.59 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=65.2
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-C-CC-EEEEECCCCCCCC-----------C---cccccCHHHhhcCCCEEEEeccCC
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-F-GC-SIAYTSRKKKPGV-----------S---YPFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~-g~-~V~~~~r~~~~~~-----------~---~~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
-++++|||.|..++..++.+.. + .. +|.+|+|+.++.. + +..+.+.++++++||+|+.|.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3589999999999999998876 3 24 7999999876421 1 223578999999999999998754
Q ss_pred h---hhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239 211 E---ETHHMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 211 ~---~t~~~i~~~~l~~mk~g~ilvn~srg 237 (286)
+ ++..++..+. +|+|+.++.++.-
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~ 261 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAAC 261 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCcc
Confidence 3 3447776654 5799887766553
No 211
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.47 E-value=0.0002 Score=64.28 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=74.6
Q ss_pred EEEEcC-ChHHHHHHHHhccCC----CEEEEECCCCCCCCC----------c------ccccCHHHhhcCCCEEEEeccC
Q 043239 151 VGIVGL-GSIGSEVAKRLVPFG----CSIAYTSRKKKPGVS----------Y------PFYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 151 vgIiG~-G~iG~~~A~~l~~~g----~~V~~~~r~~~~~~~----------~------~~~~~l~e~l~~aDiV~~~lp~ 209 (286)
|+|||. |.+|..+|..+...| .+|..+|...+.... . ....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 689999987754321 0 1124567889999999996421
Q ss_pred Ch-----------hhhhcccHH---HHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE-eeccC
Q 043239 210 TE-----------ETHHMINKD---VMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV-LMCLR 263 (286)
Q Consensus 210 ~~-----------~t~~~i~~~---~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~-lDv~~ 263 (286)
.. .+..++ ++ .+....|.+++++.+..-=+-...+.+. +...++.|.+ +|..+
T Consensus 81 ~~~~g~~r~~~~~~n~~i~-~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r 150 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIV-KEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIR 150 (263)
T ss_pred CCCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence 00 011111 12 2333458899999965444445555555 5677888998 88765
No 212
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.47 E-value=0.00042 Score=54.61 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=53.4
Q ss_pred EEEEEc-CChHHHHHHHHhccC-CCEEEEE-CCCCCCCC------C-cc-c-ccCHH-Hhh--cCCCEEEEeccCChhhh
Q 043239 150 RVGIVG-LGSIGSEVAKRLVPF-GCSIAYT-SRKKKPGV------S-YP-F-YANVS-GLA--ADSDVLIVCCALTEETH 214 (286)
Q Consensus 150 ~vgIiG-~G~iG~~~A~~l~~~-g~~V~~~-~r~~~~~~------~-~~-~-~~~l~-e~l--~~aDiV~~~lp~~~~t~ 214 (286)
+++|+| .|.+|..+++.+... ++++... +++.+... + .. . ..+.+ +.+ .++|+|++|+|......
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 589999 599999999999875 7777654 43321111 0 10 0 11111 122 48999999999653333
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 043239 215 HMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~sr 236 (286)
.+. .....+++|.++||+|.
T Consensus 81 -~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 81 -IAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred -HHH-HHHhhhcCCCEEEECCc
Confidence 222 23455789999999973
No 213
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.46 E-value=0.00046 Score=70.43 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=83.0
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhcC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAAD 199 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~~ 199 (286)
++|+|||.|.||..+|..+...|++|+.+|++.+... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999999999999998765321 0 1112344 45799
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
||+|+=++|..-+.+.-+-++.-+.++++++|-.. -+-++-..|...+.. .=+..++=.|.+.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasn--TS~l~i~~ia~~~~~-p~r~ig~Hff~P~ 455 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASN--TSTISISLLAKALKR-PENFCGMHFFNPV 455 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHhhcCC-cccEEEEecCCCc
Confidence 99999999988887777777777788999887543 344666777777643 3445566666544
No 214
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.46 E-value=0.00027 Score=65.54 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=61.0
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC----------Cc--ccccCHHHhhcCCCEEEEeccCChhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV----------SY--PFYANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~----------~~--~~~~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
.++++|||.|.+|+..+..+.. .+. +|.+|+|+.++.. +. ....++++++.+||+|+++.|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 4699999999999998888874 554 7999999876432 11 23578899999999999998753
Q ss_pred hhcccHHHHhcCCCCcEEEEcC
Q 043239 214 HHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~s 235 (286)
..++..+. +++|+.+..++
T Consensus 209 ~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred CcEecHHH---cCCCceEEeeC
Confidence 45665544 57887666643
No 215
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.46 E-value=0.0004 Score=64.35 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=59.4
Q ss_pred EEEEcCChHHHHHHHHhcc-CCCEEEEE-CCCCCCC------CC------------------cccccCHHHhhcCCCEEE
Q 043239 151 VGIVGLGSIGSEVAKRLVP-FGCSIAYT-SRKKKPG------VS------------------YPFYANVSGLAADSDVLI 204 (286)
Q Consensus 151 vgIiG~G~iG~~~A~~l~~-~g~~V~~~-~r~~~~~------~~------------------~~~~~~l~e~l~~aDiV~ 204 (286)
|||+|+|.||+.+++.+.. -+++|++. |.+++.. .+ .....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999764 35787654 4333210 01 111346889999999999
Q ss_pred EeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 205 VCCALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 205 ~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
.|.|. +.+..+++.+..|+.+.+|+..-
T Consensus 81 e~Tp~---~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATPG---GIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCCC---CCChhhHHHHHhCCcCEEEECCC
Confidence 98654 56678888999999999888653
No 216
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.45 E-value=0.00048 Score=70.13 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=82.6
Q ss_pred CEEEEEcCChHHHHHHHHhc-cCCCEEEEECCCCCCCC----------------C-------------cccccCHHHhhc
Q 043239 149 KRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKKPGV----------------S-------------YPFYANVSGLAA 198 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~-~~g~~V~~~~r~~~~~~----------------~-------------~~~~~~l~e~l~ 198 (286)
++|+|||.|.||..+|..+. ..|++|+.+|.+++... + .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999987 57999999998864211 0 0112345 4679
Q ss_pred CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
+||+|+=++|...+.+.-+-++.-+.++++++|..- -+-+.-..|.+.+. ..=+.+++-.|.+.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasn--TS~l~i~~la~~~~-~p~r~~g~HffnP~ 447 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASN--TSSLPIGQIAAAAS-RPENVIGLHYFSPV 447 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeC--CCCCCHHHHHHhcC-CcccEEEEecCCcc
Confidence 999999999988887777777777778999877633 33456667777764 33355677777554
No 217
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.43 E-value=0.00037 Score=60.48 Aligned_cols=91 Identities=24% Similarity=0.288 Sum_probs=62.7
Q ss_pred CEEEEEcCChHHHHHHHHhccC--CCE-EEEECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF--GCS-IAYTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~--g~~-V~~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++|||||+|.||+.+.+.+..- .++ +.+||++.++.. ......+++|++++.|+++=|.. .+..+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e---- 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVRE---- 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHH----
Confidence 4799999999999999999853 354 678999887654 22334789999999999988764 223332
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHH
Q 043239 220 DVMTALGKEGVIINVGRGALIDEKE 244 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd~~a 244 (286)
-..+.|+.|.=+|=+|-|.+.|+.-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2334455665455556688776543
No 218
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.39 E-value=0.0021 Score=57.40 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=72.7
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC----------------------CC--CCc------ccccC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK----------------------PG--VSY------PFYAN 192 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~----------------------~~--~~~------~~~~~ 192 (286)
.++.|++|.|-|+|++|+.+|+.|...|++|+ +.|.+.. .. ..+ ....+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 46899999999999999999999999999988 4442110 00 000 01113
Q ss_pred HHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 193 VSGLA-ADSDVLIVCCALTEETHHMINKDVMTALG--KEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 193 l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk--~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
.++++ .+|||++-|. +.+.|+.+..+.++ .=.+++-.+.+.+.+ +-.+.|.++.|.
T Consensus 114 ~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 114 GKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 33433 4699888773 67889999888884 334777888888755 455788888775
No 219
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.38 E-value=0.0012 Score=52.35 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=59.7
Q ss_pred CEEEEEcC-ChHHHHHHHHhcc-CCCEEE-EECCCCCCCC-------------CcccccCHHHhhcCCCEEEEeccCChh
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVP-FGCSIA-YTSRKKKPGV-------------SYPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~~-------------~~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
++|+|+|+ |+||+.+++.+.. -++++. +++++.+... +.....++++++.++|+++-.. +++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence 48999999 9999999999987 678864 5677662211 2334578999999999987764 233
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
...-.-+..+ +.|.-+|-..+|---++.+.++.+.+.
T Consensus 79 ~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 79 AVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred HhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 2211112222 345556655566544444555555444
No 220
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.37 E-value=0.0019 Score=56.40 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=69.5
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCC----------CCC-----C-Ccccc-----cCHHHhh-cCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKK----------KPG-----V-SYPFY-----ANVSGLA-ADS 200 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~----------~~~-----~-~~~~~-----~~l~e~l-~~a 200 (286)
.++.|+++.|.|+|++|+.+|+.|...|.+|+ +.|.+. +.. . ....+ .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 45889999999999999999999999999765 556554 110 0 11111 1112332 379
Q ss_pred CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
|+++-|.+ .++|+.+....++ -.+++-.+.+.+.+ .-.+.|+++++.
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 99988865 4478888888776 34566677777655 456677776654
No 221
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.37 E-value=0.0047 Score=54.31 Aligned_cols=104 Identities=23% Similarity=0.313 Sum_probs=70.8
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---C--------------C----c--ccccCHHHhh-cC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---V--------------S----Y--PFYANVSGLA-AD 199 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~--------------~----~--~~~~~l~e~l-~~ 199 (286)
.++.+++++|.|+|.+|+.+|+.|..+|++|++...+.... . + + ....+.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 45889999999999999999999999999998543331100 0 0 0 0011223332 36
Q ss_pred CCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 200 SDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 200 aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
||+++-|.+ .+.++.+...+++ =.+++-.+.+.+- ....+.|+++.+.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 898887764 5578888888887 3456777777764 5566888888775
No 222
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.00076 Score=63.24 Aligned_cols=105 Identities=13% Similarity=0.219 Sum_probs=79.0
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------------C-------------cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------S-------------YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~-------------~~~~~~l~e~l~~aDiV 203 (286)
|+|.|+|.|-+|...+..|..+|++|+.+|..+++.. + .....+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5899999999999999999999999999997765311 0 12235778899999999
Q ss_pred EEeccCChhhhhccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 204 IVCCALTEETHHMIN--------KDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 204 ~~~lp~~~~t~~~i~--------~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
++++|......+-++ ++..+.++..+++|+=|+-.+=..+.+.+-+....
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 999985444344333 44566777779999999888777777766555443
No 223
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.36 E-value=0.00034 Score=62.64 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=54.1
Q ss_pred HHHHhccCC--CEEEEECCCCCCCC-----Ccc-cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEc
Q 043239 163 VAKRLVPFG--CSIAYTSRKKKPGV-----SYP-FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINV 234 (286)
Q Consensus 163 ~A~~l~~~g--~~V~~~~r~~~~~~-----~~~-~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~ 234 (286)
+|+.|+..| .+|+++|+++.... ++. ...+-.+.++++|+|++|+|.. .+..++ ++..+.+++|++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577788777 68999999876432 222 1222257889999999999943 444444 5677789999999999
Q ss_pred CCCcccCHHHHHHHHH
Q 043239 235 GRGALIDEKELVHFLV 250 (286)
Q Consensus 235 srg~~vd~~al~~al~ 250 (286)
+.-..--.+++.+.+.
T Consensus 79 ~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP 94 (258)
T ss_dssp -S-CHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcC
Confidence 8776555556666555
No 224
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.35 E-value=0.0017 Score=59.94 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=66.0
Q ss_pred CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCC-CCC-C--CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKK-KPG-V--SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~-~~~-~--~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
.+|||+|+|+||+.+++.+... ++++. +++++. +.. . +.....+.++++.+.|+|++|.|..... ....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence 5999999999999999999765 78876 578875 221 1 2223356777888999999999854321 2334
Q ss_pred hcCCCCcEEEEcCCCc--ccCHHH-HHHHHHh-CCeeE
Q 043239 223 TALGKEGVIINVGRGA--LIDEKE-LVHFLVR-GSLVE 256 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~--~vd~~a-l~~al~~-~~i~g 256 (286)
..|+.|--+|+..--. +-+..+ +.++.++ |+...
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv 116 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV 116 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 4456666677774321 223334 4445553 56553
No 225
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.34 E-value=0.00039 Score=64.89 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=62.4
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-CCC-EEEEECCCCCCCC---------C--cccccCHHHhhcCCCEEEEeccCChhhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-FGC-SIAYTSRKKKPGV---------S--YPFYANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~g~-~V~~~~r~~~~~~---------~--~~~~~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
-++++|||.|..+...++.+.. +.. +|.+|+|+.++.. + +....++++++++||+|+++.|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 3589999999999988876653 344 7999999976532 1 223578999999999999998632 223
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 043239 215 HMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~sr 236 (286)
.++..+. +|||+.+.-+|.
T Consensus 208 Pvl~~~~---lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVGG 226 (346)
T ss_pred ceecHHH---cCCCcEEEecCC
Confidence 5666554 589998777663
No 226
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.31 E-value=0.00044 Score=59.72 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=50.7
Q ss_pred CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C-ccc-ccCH-HHhhcCCCEEEEeccCC
Q 043239 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-YPF-YANV-SGLAADSDVLIVCCALT 210 (286)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-~~~-~~~l-~e~l~~aDiV~~~lp~~ 210 (286)
+..-++.|++|.|||.|.+|...++.|...|++|+++++...+.. + ... ...+ .+.+.++|+|+.++...
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 455679999999999999999999999999999999987643321 1 110 1111 23577899888876643
No 227
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.31 E-value=0.00031 Score=60.84 Aligned_cols=68 Identities=16% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------Cccc---ccCHHHhhcCCCEEEEeccC
Q 043239 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYPF---YANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~~---~~~l~e~l~~aDiV~~~lp~ 209 (286)
+..-++.|++|.|||.|.+|..-++.|...|++|+++++...+.. .... ... .+.+.++|+|+.+...
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDD 79 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence 344568999999999999999999999999999999988654321 1110 112 3456788988877543
No 228
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.30 E-value=0.00053 Score=62.26 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC----------cccc---cCHHHhhcCCCEEEEeccCCh
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS----------YPFY---ANVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~----------~~~~---~~l~e~l~~aDiV~~~lp~~~ 211 (286)
+.++++.|||.|.+|++++..|...|+ +|++++|+.++... .... .++.+.+.++|+|+.++|...
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 678899999999999999999999998 69999998765321 0111 223355688999999998653
Q ss_pred hhhhcccHHHHh---------cCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 212 ETHHMINKDVMT---------ALGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 212 ~t~~~i~~~~l~---------~mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
. ++...+. .++++.+++|+--.. ..+ .|+++.++
T Consensus 203 ~----~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~ 245 (282)
T TIGR01809 203 P----ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSA 245 (282)
T ss_pred C----CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHH
Confidence 2 2222221 234667888886433 233 34444444
No 229
>PLN02477 glutamate dehydrogenase
Probab=97.29 E-value=0.0019 Score=61.56 Aligned_cols=105 Identities=22% Similarity=0.301 Sum_probs=73.4
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCCC--CC------------------Ccc--cccCHHHh-hc
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKKP--GV------------------SYP--FYANVSGL-AA 198 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~~--~~------------------~~~--~~~~l~e~-l~ 198 (286)
+.+++|++|+|.|+|++|+.+|+.|...|.+|+ +.|.+..- .. ++. ...+.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 457899999999999999999999999999988 44544110 00 000 01122333 34
Q ss_pred CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
.|||++-|. ..+.|+++....++- .+++-.+.+.+ .. .-.+.|+++.|.
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~a-k~I~egAN~p~-t~-ea~~~L~~rGI~ 329 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVKA-KFIVEAANHPT-DP-EADEILRKKGVV 329 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcCC-cEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence 799887764 567899998888853 57788888887 33 345888888775
No 230
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.29 E-value=0.0014 Score=58.57 Aligned_cols=100 Identities=25% Similarity=0.369 Sum_probs=65.5
Q ss_pred CEEEEEcCChHHHHHHHHhccC---CCEEE-EECCCCCCCC----CcccccCHHHh-hcCCCEEEEeccCChhhhhcccH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF---GCSIA-YTSRKKKPGV----SYPFYANVSGL-AADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~---g~~V~-~~~r~~~~~~----~~~~~~~l~e~-l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++|||||+|.||+.+++.+.+- ++++. +++|..+... ....+.+++++ ....|+|+=|.+ ++ .+.+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~--~~---av~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG--QQ---AIAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC--HH---HHHH
Confidence 5899999999999999998753 35544 5666543221 23456789997 577999988865 22 1212
Q ss_pred HHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhCC
Q 043239 220 DVMTALGKEGVIINVGRGALID---EKELVHFLVRGS 253 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd---~~al~~al~~~~ 253 (286)
-..+-++.|.-++=+|-|.+.| .+.|.++.++++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 2233345676677777888887 455556555544
No 231
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.28 E-value=0.00098 Score=61.04 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=67.1
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC---------------cc--cccCHHHhhcCCCEEEEecc--
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS---------------YP--FYANVSGLAADSDVLIVCCA-- 208 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~---------------~~--~~~~l~e~l~~aDiV~~~lp-- 208 (286)
++|+|||.|.||..+|..+...|. +|..+|+..+...+ .. ...+. +.+++||+|+++..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 589999999999999999987665 89999986654320 00 11344 45799999999863
Q ss_pred CCh---------hhhhcccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEEE
Q 043239 209 LTE---------ETHHMINKDV---MTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVELV 258 (286)
Q Consensus 209 ~~~---------~t~~~i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga~ 258 (286)
..+ .+..++ ++. +....+.+++|+++...-+....+.+. +...++.|.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 211 111112 122 222246678888866655555555543 2235677664
No 232
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.26 E-value=0.0014 Score=58.91 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=62.3
Q ss_pred CEEEEEcCChHHHHHHHHhccC-CCEEE-EECCCCCCC--C-----CcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF-GCSIA-YTSRKKKPG--V-----SYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~--~-----~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
++|||||+|.||+.+++.+... ++++. ++++..... . +...+.+++++-.+.|+|+.|.|.. ... +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALK----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHH----H
Confidence 4899999999999999999875 55653 333322211 0 2334577888745699999998743 222 2
Q ss_pred HHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCee
Q 043239 220 DVMTALGKEGVIINVGRGALIDE---KELVHFLVRGSLV 255 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~srg~~vd~---~al~~al~~~~i~ 255 (286)
-....++.|.-++-.+-+...|. +.|.++.++++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 22333455554555555655443 4566666666544
No 233
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.24 E-value=0.0011 Score=61.28 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEEec
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~~l 207 (286)
+..++|+|||.|.||..+|..+...|. +|+.+|.+++... + .....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999887785 8999998776321 0 1112455 5679999999975
Q ss_pred cCCh----------------hhhhcccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCeeEEE
Q 043239 208 ALTE----------------ETHHMINKDV---MTALGKEGVIINVGRGALIDEKELVHFLV--RGSLVELV 258 (286)
Q Consensus 208 p~~~----------------~t~~~i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~al~--~~~i~ga~ 258 (286)
-... .+..++ .+. +....|.+++++++...-+....+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 2211 111111 122 22235677999998655444555555432 34666666
No 234
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.23 E-value=0.00065 Score=53.59 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=51.3
Q ss_pred EEEEEc-CChHHHHHHHHhccC-CCEE-EEECCCCCCCC------C----cc--cc-cCHHHhhcCCCEEEEeccCChhh
Q 043239 150 RVGIVG-LGSIGSEVAKRLVPF-GCSI-AYTSRKKKPGV------S----YP--FY-ANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 150 ~vgIiG-~G~iG~~~A~~l~~~-g~~V-~~~~r~~~~~~------~----~~--~~-~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
+|+|+| .|.+|+.+.++|... .+++ .+++++.+.-. + .. .. ..-.+.+.++|+|++|+|... +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 699999 999999999999974 3454 44555542211 0 00 01 112244599999999998432 2
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q 043239 214 HHMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~srg 237 (286)
..+. ... +++|..+||.|..
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSST
T ss_pred HHHH-HHH---hhCCcEEEeCCHH
Confidence 2222 222 4789999999754
No 235
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.22 E-value=0.0031 Score=57.65 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=77.4
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC--CCCCcccccCHHHhhcCCCEEEEeccCChhh---h-------
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK--PGVSYPFYANVSGLAADSDVLIVCCALTEET---H------- 214 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~--~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t---~------- 214 (286)
.|++++|||-=.--..++++|.+.|++|.++.-+.+ ...+.....+.+++++++|+|+.-+|.+.+. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 378999999999999999999999999886544322 2335555667788999999999988865332 1
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239 215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRT 264 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~ 264 (286)
--++.+.+++|++|.+++ ++.+.. . +-+.+.++++.. +|..+.
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~~--~~~~~~ 123 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRKL--VELFER 123 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCeE--EEEecc
Confidence 113567899999998544 344332 2 335667777764 355543
No 236
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.14 E-value=0.00038 Score=54.25 Aligned_cols=102 Identities=24% Similarity=0.359 Sum_probs=68.9
Q ss_pred CEEEEEcCChHHHHHHHHhccC--CCEEE-EECCCCCCCC------CcccccCHHHhhc--CCCEEEEeccCChhhhhcc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF--GCSIA-YTSRKKKPGV------SYPFYANVSGLAA--DSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i 217 (286)
.++||||+|.+|+...+.+... ++++. +++++++... +...+.|++++++ +.|+|+++.|...... +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~ 78 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--I 78 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--H
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--H
Confidence 3799999999999999888765 45664 6788765422 4446789999998 7999999998543222 2
Q ss_pred cHHHHhcCCCC-cEEEEcC-CCcccCHHHHHHHHHhCCee
Q 043239 218 NKDVMTALGKE-GVIINVG-RGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 218 ~~~~l~~mk~g-~ilvn~s-rg~~vd~~al~~al~~~~i~ 255 (286)
-...++ .| .+++.-- --++-+.+.|.++.++.+..
T Consensus 79 ~~~~l~---~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 79 AKKALE---AGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHHHHH---TTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHH---cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 233333 33 5666642 23556777777777765543
No 237
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.12 E-value=0.0011 Score=61.44 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=57.7
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc------ccCHHHhhcCCCEEEEeccCChhhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF------YANVSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~------~~~l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
.|++|+|+|+|-+|....+.++++|++|++++++.++.+ +... ...++++-+.+|+++.++| ....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~-- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATL-- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhH--
Confidence 489999999999999999999999999999999988642 2211 1122233333999999887 4332
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 043239 216 MINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~sr 236 (286)
...+..++++..++-++-
T Consensus 243 ---~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred ---HHHHHHHhcCCEEEEECC
Confidence 234445555555555543
No 238
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.10 E-value=0.0014 Score=59.63 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCC---CCCC-----------C--cc--cc---cCHHHhhcCCCE
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKK---KPGV-----------S--YP--FY---ANVSGLAADSDV 202 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~---~~~~-----------~--~~--~~---~~l~e~l~~aDi 202 (286)
.+.++++.|+|.|.+|++++..|...|++ |.+++|+. ++.. . .. .. .++++.++.+|+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 36788999999999999999999999995 99999985 2210 0 00 01 123445678899
Q ss_pred EEEeccCChh--hhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 203 LIVCCALTEE--THH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 203 V~~~lp~~~~--t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
|+.++|..-. ... .+. ....++++.+++|+--.. .++.=|..|-+.|
T Consensus 203 lINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 252 (289)
T PRK12548 203 LVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNP-KKTKLLEDAEAAG 252 (289)
T ss_pred EEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCC-CCCHHHHHHHHCC
Confidence 9999986521 111 110 124467888999997554 3444444444433
No 239
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.08 E-value=0.00048 Score=56.08 Aligned_cols=105 Identities=23% Similarity=0.299 Sum_probs=70.6
Q ss_pred EEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc--------------cccCHHHhhcCCCEEEEeccCCh
Q 043239 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP--------------FYANVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~--------------~~~~l~e~l~~aDiV~~~lp~~~ 211 (286)
|+|+|.|.||..+|.+|+..|++|..+.|+. ... +.. ...+..+....+|+|++|+.. .
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence 6899999999999999999999999998877 211 110 011122456789999999874 3
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEe
Q 043239 212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVL 259 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~l 259 (286)
++...+. .....+.+++.++-+-.| +-.++.+.+.+...++.++..
T Consensus 79 ~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 79 QLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp GHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred chHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 4454543 366667777788877666 445666666765556654443
No 240
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.08 E-value=0.0051 Score=55.07 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=46.0
Q ss_pred CEEEEEcC-ChHHHHHHHHhccC-CCEEE-EECCCCCCCC-----CcccccCHHHhhcCCCEEEEecc
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPF-GCSIA-YTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~-g~~V~-~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp 208 (286)
++|+|+|+ |.||+.+++.+... ++++. ++++..+... +...+.+++++++.+|+|+.+.|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 58999998 99999999998864 67865 5777654332 23346789999989999997765
No 241
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.05 E-value=0.00065 Score=65.19 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=67.7
Q ss_pred CEEEEEcCChHHHHHHH---Hh---ccCCCEEEEECCCCCCCC-----------------CcccccCHHHhhcCCCEEEE
Q 043239 149 KRVGIVGLGSIGSEVAK---RL---VPFGCSIAYTSRKKKPGV-----------------SYPFYANVSGLAADSDVLIV 205 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~---~l---~~~g~~V~~~~r~~~~~~-----------------~~~~~~~l~e~l~~aDiV~~ 205 (286)
.+|+|||.|.+|.+.+- .+ ...|.+|..||++++... ......++++.+++||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998554 22 344679999999875421 11234678899999999999
Q ss_pred eccCChh---hh--------h-------------c--------ccHHHHhcC---CCCcEEEEcCCCcccCHHHHHHHHH
Q 043239 206 CCALTEE---TH--------H-------------M--------INKDVMTAL---GKEGVIINVGRGALIDEKELVHFLV 250 (286)
Q Consensus 206 ~lp~~~~---t~--------~-------------~--------i~~~~l~~m---k~g~ilvn~srg~~vd~~al~~al~ 250 (286)
++|.... .+ + + +-.+..+.+ .|.++++|.+...-+-+.++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 9983110 00 0 0 011233333 3689999998887777777776654
No 242
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.04 E-value=0.0016 Score=56.14 Aligned_cols=80 Identities=23% Similarity=0.246 Sum_probs=55.8
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------------------------------Cc--c--
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------------------------------SY--P-- 188 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------------------------------~~--~-- 188 (286)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|+..-... .. .
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 7888887521100 00 0
Q ss_pred --c--ccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239 189 --F--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224 (286)
Q Consensus 189 --~--~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~ 224 (286)
. ..++++.++++|+|+.|+ ++.+++..+++....+
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~-d~~~~r~~l~~~~~~~ 135 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCT-DNFATRYLINDACVAL 135 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 0 123456778888887776 4556676666554443
No 243
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.00 E-value=0.0045 Score=59.58 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---------CCccc--ccCHHHhhcCCCEEEEeccCChhhh
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---------VSYPF--YANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---------~~~~~--~~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
..+++|.|+|+|.-|.++|+.|++.|++|+++|.++... .+... -.-..+.+.++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 449999999999999999999999999999999666551 11111 11112567889999886 3222222
Q ss_pred hc-----------ccH-HHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHh--------CCeeEEEeeccCCCCC-----
Q 043239 215 HM-----------INK-DVMTAL-GKEGV-IINVGRGALIDEKELVHFLVR--------GSLVELVLMCLRTSLM----- 267 (286)
Q Consensus 215 ~~-----------i~~-~~l~~m-k~g~i-lvn~srg~~vd~~al~~al~~--------~~i~ga~lDv~~~e~~----- 267 (286)
.+ +.+ +.+-+. .+..+ -|-=+.|....+.-+..-|++ |.|...++++.+.+..
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~~~d~~V 163 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAEPADVYV 163 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccCCCCEEE
Confidence 22 211 223332 13333 344457887777777666665 4566777888876322
Q ss_pred --CcCCccccccccccccc
Q 043239 268 --CQRSCLHWIMLCCLHML 284 (286)
Q Consensus 268 --~~~~~l~~~~~~tph~~ 284 (286)
....+|.+..-+.|++|
T Consensus 164 lElSSfQL~~~~~~~P~ia 182 (448)
T COG0771 164 LELSSFQLETTSSLRPEIA 182 (448)
T ss_pred EEccccccccCccCCccEE
Confidence 12334444446666665
No 244
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.00 E-value=0.0025 Score=58.49 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=71.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-----C-Ccc-----------cccCHHHhhcCCCEEEEeccCCh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-----V-SYP-----------FYANVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----~-~~~-----------~~~~l~e~l~~aDiV~~~lp~~~ 211 (286)
++|+|+|.|.||+-+|-+|...|++|+.+.|+.+.. . +.. ......+....+|+|++++...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 589999999999999999999999999998864221 1 110 0011112345789999998743
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239 212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV 258 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~ 258 (286)
++...+ +...+.+.+++.+|-+-.|= -.++.+.+.+...++.++.
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFAS 126 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEE
Confidence 344433 45666778888888776653 3455667777655555443
No 245
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.00 E-value=0.008 Score=57.90 Aligned_cols=106 Identities=14% Similarity=0.248 Sum_probs=72.1
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEE-CCCCCC---------------------CCCcc-----cccCHHH
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYT-SRKKKP---------------------GVSYP-----FYANVSG 195 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~-~r~~~~---------------------~~~~~-----~~~~l~e 195 (286)
+.+++|++|+|.|+|++|+.+|+.|..+|++|++. |.+..- ...+. ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45689999999999999999999999999999877 522110 00000 0112333
Q ss_pred hhc-CCCEEEEeccCChhhhhcccHHHHhcCC-CC-cEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 196 LAA-DSDVLIVCCALTEETHHMINKDVMTALG-KE-GVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 196 ~l~-~aDiV~~~lp~~~~t~~~i~~~~l~~mk-~g-~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
++. +|||++-|. +.+.|+.+....++ ++ .+++-.+.+.+ +.+-.+.|.++.|.
T Consensus 307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence 333 699988775 46678888766663 23 47778888887 44455788888775
No 246
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.99 E-value=0.0022 Score=58.81 Aligned_cols=88 Identities=19% Similarity=0.332 Sum_probs=57.4
Q ss_pred CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCCC-------------c--ccccCHHHhhcCCCEEEEeccCCh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGVS-------------Y--PFYANVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~~-------------~--~~~~~l~e~l~~aDiV~~~lp~~~ 211 (286)
++|+|||.|.+|..+|..|...| .+|..+|++.+...+ . .....-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 47999999999999999999888 479999997765321 0 011122345789999999876421
Q ss_pred h---hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 043239 212 E---TH--------HMIN--KDVMTALGKEGVIINVGR 236 (286)
Q Consensus 212 ~---t~--------~~i~--~~~l~~mk~g~ilvn~sr 236 (286)
. ++ .++. ...+....|.+++++++.
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1 11 1111 012333467889999973
No 247
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.98 E-value=0.0002 Score=62.23 Aligned_cols=118 Identities=18% Similarity=0.162 Sum_probs=76.5
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------------------Cc-------------ccc
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------------------SY-------------PFY 190 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------------------~~-------------~~~ 190 (286)
...-+.|+|+|.|.||..+|+.....|++|+.+|++.+... .. +..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 34456899999999999999999999999999998875321 00 012
Q ss_pred cCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCeeEEEeeccCCCC
Q 043239 191 ANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII-NVGRGALIDEKELVHFLVRGSLVELVLMCLRTSL 266 (286)
Q Consensus 191 ~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv-n~srg~~vd~~al~~al~~~~i~ga~lDv~~~e~ 266 (286)
.++.++++++|+|+=++-.+-+.+.-+-++.=...|+.+++. |+|. +...+++.++++. -+.++|-.|.+.|
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP 160 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP 160 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch
Confidence 456677788888765554333322222233333357766654 3333 4556677776653 4467888887765
No 248
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.98 E-value=0.0024 Score=58.93 Aligned_cols=62 Identities=24% Similarity=0.338 Sum_probs=46.3
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC-------c-------ccccCHHHhhcCCCEEEEecc
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS-------Y-------PFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~-------~-------~~~~~l~e~l~~aDiV~~~lp 208 (286)
.+++|+|||.|.+|..+|..|...|. ++..+|++.+...+ . ....+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 56799999999999999999988887 79999987664321 0 011122356899999999753
No 249
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.98 E-value=0.0055 Score=50.79 Aligned_cols=95 Identities=13% Similarity=0.217 Sum_probs=69.1
Q ss_pred CCCEEEEEc--CChHHHHHHHHhccCCCEEEEECCCCCC--C----------------CCcccccCHHHhhcCCCEEEEe
Q 043239 147 GGKRVGIVG--LGSIGSEVAKRLVPFGCSIAYTSRKKKP--G----------------VSYPFYANVSGLAADSDVLIVC 206 (286)
Q Consensus 147 ~g~~vgIiG--~G~iG~~~A~~l~~~g~~V~~~~r~~~~--~----------------~~~~~~~~l~e~l~~aDiV~~~ 206 (286)
.|++|+++| -+++..+++..+..+|+++.+..+..-. . .......++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 478999999 3899999999999999999888876622 1 0123457999999999999775
Q ss_pred ccCC---hh--------hhhcccHHHHhcCCCCcEEEEcC---CCcccC
Q 043239 207 CALT---EE--------THHMINKDVMTALGKEGVIINVG---RGALID 241 (286)
Q Consensus 207 lp~~---~~--------t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd 241 (286)
.--+ .+ ....++++.++.+|++++|..+. ||.=++
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~ 129 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVS 129 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBE
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeC
Confidence 4320 11 22567899999999999999985 454333
No 250
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.97 E-value=0.007 Score=58.54 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=79.9
Q ss_pred CCCCEEEEEcC----ChHHHHHHHHhccCCC--EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccH
Q 043239 146 LGGKRVGIVGL----GSIGSEVAKRLVPFGC--SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 146 l~g~~vgIiG~----G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~ 219 (286)
+.-++|+|||. |.+|..+.+.|...|+ +|+.+++......+...+.+++++-...|++++++|. +.+..++.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~- 82 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVE- 82 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHH-
Confidence 45679999999 8899999999999887 7888898877666777788999998889999999993 34444443
Q ss_pred HHHhcCCCCcE-EEEcCCCcc-----cCHHHHHHHHHhCCeeEEE
Q 043239 220 DVMTALGKEGV-IINVGRGAL-----IDEKELVHFLVRGSLVELV 258 (286)
Q Consensus 220 ~~l~~mk~g~i-lvn~srg~~-----vd~~al~~al~~~~i~ga~ 258 (286)
+... ..-..+ ++.-+-++. ..++.+.+..+++.++-.+
T Consensus 83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 2222 333344 443333332 3467888888888887554
No 251
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.95 E-value=0.0049 Score=56.16 Aligned_cols=106 Identities=12% Similarity=0.175 Sum_probs=68.4
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCC---CCC------C----c-ccccCH------HHhhcCCCEE
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKK---PGV------S----Y-PFYANV------SGLAADSDVL 203 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~---~~~------~----~-~~~~~l------~e~l~~aDiV 203 (286)
.+.++++.|+|.|..+++++-.|...|. +|++++|+.+ +.. . . ....++ .+.+.++|+|
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv 200 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 200 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence 4678899999999999999999988887 7999999853 211 0 0 012222 3355689999
Q ss_pred EEeccCChh--hhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 204 IVCCALTEE--THH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 204 ~~~lp~~~~--t~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
+++.|..-. ... ... ....++++.++.|+--.. ..+ .|+++.++.++
T Consensus 201 INaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~ 250 (288)
T PRK12749 201 TNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGC 250 (288)
T ss_pred EECCCCCCCCCCCCCCCC--cHHHCCCCCEEEEecCCC-ccC-HHHHHHHHCCC
Confidence 999986421 111 111 123467888999997544 333 45555555444
No 252
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.92 E-value=0.002 Score=58.98 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=65.1
Q ss_pred EEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------Cc--c--cccCHHHhhcCCCEEEEeccCC--
Q 043239 151 VGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------SY--P--FYANVSGLAADSDVLIVCCALT-- 210 (286)
Q Consensus 151 vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~~--~--~~~~l~e~l~~aDiV~~~lp~~-- 210 (286)
|+|||.|.||..+|..+...|. +|+.+|++.+... .. . ...+. +.+++||+|+++....
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence 6899999999999999886665 9999998765321 00 1 12344 4589999999976311
Q ss_pred h---------hhhhcccHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCeeEEE
Q 043239 211 E---------ETHHMINKDV---MTALGKEGVIINVGRGALIDEKELVHFL--VRGSLVELV 258 (286)
Q Consensus 211 ~---------~t~~~i~~~~---l~~mk~g~ilvn~srg~~vd~~al~~al--~~~~i~ga~ 258 (286)
+ .+..++ ++. +....+.+++|+++...-+-...+.+.. ...++.|.+
T Consensus 80 ~~~~r~e~~~~n~~i~-~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 80 PGMSRDDLLGTNAKIV-KEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred cCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 1 111111 122 2233567788888755544555555543 233566666
No 253
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.92 E-value=0.0036 Score=55.83 Aligned_cols=97 Identities=22% Similarity=0.215 Sum_probs=66.4
Q ss_pred CcccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC-----------CCcccccCHHHhhcCCCEEEEeccC
Q 043239 142 LGSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG-----------VSYPFYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 142 ~~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~-----------~~~~~~~~l~e~l~~aDiV~~~lp~ 209 (286)
+|.+++..+++|+|+ |.||..+|+.|.+.+.+....-|..+.. .+.....|++..+.+.|+++-...
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs- 239 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS- 239 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence 688999999999995 9999999999999888654444332211 122334566665555555543322
Q ss_pred ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 043239 210 TEETHHMINKDVMTALGKEGVIINVGRGALIDEK 243 (286)
Q Consensus 210 ~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~ 243 (286)
-.+-..|+.+. +|||+.+||-++..=+|+.
T Consensus 240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred -cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence 22445566554 6899999999998877765
No 254
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.87 E-value=0.0015 Score=54.17 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---C-ccc-ccCH-HHhhcCCCEEEEeccC
Q 043239 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---S-YPF-YANV-SGLAADSDVLIVCCAL 209 (286)
Q Consensus 140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~-~~~-~~~l-~e~l~~aDiV~~~lp~ 209 (286)
+++.-++.|++|.|||.|.+|...++.|...|++|+++++...... . ... ...+ ++-+.++|+|+.++..
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d 80 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCC
Confidence 4566789999999999999999999999999999999875432210 0 000 1111 1236788988887653
No 255
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0011 Score=58.20 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=48.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC-------cc-------cccCHHHh-hcCCCEEEEeccCCh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS-------YP-------FYANVSGL-AADSDVLIVCCALTE 211 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~-------~~-------~~~~l~e~-l~~aDiV~~~lp~~~ 211 (286)
|++.|+|+|.+|..+|+.|...|++|+..++..+.... .. ....|.++ +.++|+++.+...+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 58999999999999999999999999999887754221 11 12345555 788999998876543
No 256
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.84 E-value=0.0069 Score=58.24 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=70.2
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---CCc---------------------------ccccC
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---VSY---------------------------PFYAN 192 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~~~---------------------------~~~~~ 192 (286)
|.+|.|++|.|.|+|++|...|+.|..+|++|++.+.+.... .+. ....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 557999999999999999999999999999998744322110 000 00112
Q ss_pred HHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 193 VSGLA-ADSDVLIVCCALTEETHHMINKDVMTALGK-EG-VIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 193 l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~-g~-ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
.++++ ..|||++=|. +.+.|+++..+.++. |+ +|+--+.+ ++..++. +.|.++.|.
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 33332 4588887664 678899998888865 44 45555666 5655554 555555553
No 257
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.83 E-value=0.0044 Score=57.15 Aligned_cols=109 Identities=17% Similarity=0.261 Sum_probs=66.9
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC----------c----c-c-ccCHHHhhcCCCEEEEeccC
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS----------Y----P-F-YANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~----------~----~-~-~~~l~e~l~~aDiV~~~lp~ 209 (286)
..+|+|||.|.+|..+|..|...|. ++..+|.+.+...+ + . . ..+.+ .+++||+|+++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence 3589999999999999999887665 78899987654320 0 1 1 13454 48999999996432
Q ss_pred Ch---hhhh-cc--c----H---HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE
Q 043239 210 TE---ETHH-MI--N----K---DVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL 257 (286)
Q Consensus 210 ~~---~t~~-~i--~----~---~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga 257 (286)
.+ .++. ++ | + +.+....|.+++++++...=+-...+.+. +...++-|.
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence 11 1221 11 1 1 12233467899999985443444444444 445565555
No 258
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.83 E-value=0.0045 Score=57.87 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=59.3
Q ss_pred CEEEEEcC-ChHHHHHHHHhccC-CCEEE-EECCCC--CCCC----C---c---cccc--CHHHhhcCCCEEEEeccCCh
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPF-GCSIA-YTSRKK--KPGV----S---Y---PFYA--NVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~-g~~V~-~~~r~~--~~~~----~---~---~~~~--~l~e~l~~aDiV~~~lp~~~ 211 (286)
++|+|+|. |.+|+.+++.|..+ ++++. .++++. .+.. + . ..+. +.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 56776 434332 1110 1 0 0122 4556667899999999954
Q ss_pred hhhhcccHHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 043239 212 ETHHMINKDVMTA-LGKEGVIINVGRGALIDEKELVH 247 (286)
Q Consensus 212 ~t~~~i~~~~l~~-mk~g~ilvn~srg~~vd~~al~~ 247 (286)
... +.... .+.|..+||.|..--.+..++++
T Consensus 80 ~s~-----~~~~~~~~~G~~VIDlS~~fR~~~~~~y~ 111 (346)
T TIGR01850 80 VSA-----ELAPELLAAGVKVIDLSADFRLKDPEVYE 111 (346)
T ss_pred HHH-----HHHHHHHhCCCEEEeCChhhhcCChhhhH
Confidence 222 22222 25789999998665555444333
No 259
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.83 E-value=0.014 Score=52.05 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC-----------EEE
Q 043239 107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-----------SIA 175 (286)
Q Consensus 107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-----------~V~ 175 (286)
+|=-+++.+|+.+|- .+++|...+|.|+|.|..|..+|+.+...+. +++
T Consensus 4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~ 63 (254)
T cd00762 4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW 63 (254)
T ss_pred hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence 455677888887774 3456889999999999999999999987654 577
Q ss_pred EECCCCC----C--CC----C---c----ccccCHHHhhc--CCCEEEEeccCChhhhhcccHHHHhcCC---CCcEEEE
Q 043239 176 YTSRKKK----P--GV----S---Y----PFYANVSGLAA--DSDVLIVCCALTEETHHMINKDVMTALG---KEGVIIN 233 (286)
Q Consensus 176 ~~~r~~~----~--~~----~---~----~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~l~~mk---~g~ilvn 233 (286)
.+|+..- . .. . + ....+|.|+++ ..|+++-.- ...+++.++.+..|. +.++|.=
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 7776531 1 10 0 1 12358999999 999887642 235789999999998 8899999
Q ss_pred cCCCcc---cCHHHHHHHHHhCCeeEEEeecc
Q 043239 234 VGRGAL---IDEKELVHFLVRGSLVELVLMCL 262 (286)
Q Consensus 234 ~srg~~---vd~~al~~al~~~~i~ga~lDv~ 262 (286)
.|+... ...++.+++=+.+.|.+.+....
T Consensus 140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~ 171 (254)
T cd00762 140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFH 171 (254)
T ss_pred CCCcCCccccCHHHHHhhcCCCEEEEECCCCC
Confidence 998876 34444444433334555544433
No 260
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0025 Score=59.21 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=46.6
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC------cc-c---ccCHHHhhcCCCEEEE
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS------YP-F---YANVSGLAADSDVLIV 205 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~------~~-~---~~~l~e~l~~aDiV~~ 205 (286)
+++|||||-|..|+.|+.....+|++|.+.++++..... .. . ...+.++.+.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987765431 01 1 2357789999999965
No 261
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.82 E-value=0.011 Score=54.40 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=71.6
Q ss_pred CCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCCCCCC---CcccccCHHHhhcCCCEEEEeccC--------Ch
Q 043239 146 LGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKKKPGV---SYPFYANVSGLAADSDVLIVCCAL--------TE 211 (286)
Q Consensus 146 l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~~~~~~~l~e~l~~aDiV~~~lp~--------~~ 211 (286)
+.|++|+++|- +++..+++..+..+|++|.+..+..-... ......+++++++++|+|..-.=. .+
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~ 233 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLP 233 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCcccccccccchH
Confidence 77899999997 58999999999999999998887553321 123468999999999999774310 01
Q ss_pred h-----hhhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239 212 E-----THHMINKDVMTALGKEGVIINVG---RGALIDE 242 (286)
Q Consensus 212 ~-----t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~ 242 (286)
+ ....++++.++.+|++++|.-+. ||.=|+.
T Consensus 234 ~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~ 272 (305)
T PRK00856 234 SYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIAS 272 (305)
T ss_pred HHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCH
Confidence 1 13456888898899999988874 5654443
No 262
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.78 E-value=0.0049 Score=54.67 Aligned_cols=81 Identities=10% Similarity=0.174 Sum_probs=66.5
Q ss_pred HHHHHHHhccCCCEEEEECCCCCCCC----------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCc
Q 043239 160 GSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEG 229 (286)
Q Consensus 160 G~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ 229 (286)
|..||-.+...|++|+..+++.+-.. ++....+=.+..+.+.+.++..|..+.|-++. ++.++++++|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 77899999999999999998776543 33445566678999999999999998888765 68999999999
Q ss_pred EEEEcCCCcccC
Q 043239 230 VIINVGRGALID 241 (286)
Q Consensus 230 ilvn~srg~~vd 241 (286)
++.|+.+-+.+.
T Consensus 112 VicnTCT~sp~v 123 (340)
T COG4007 112 VICNTCTVSPVV 123 (340)
T ss_pred EecccccCchhH
Confidence 999998876653
No 263
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.77 E-value=0.0086 Score=58.00 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccccc--cCHHHhhcCCCEEEEeccCChhh
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFY--ANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~--~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
+.+++|+|+|+|..|.++|+.|+..|++|.++|++..... +.... ....+.+.++|+|+.. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 6688999999999999999999999999999997653211 11111 1223446789999887 433322
Q ss_pred hhcc-----------cH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 214 HHMI-----------NK-DVM-TALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 214 ~~~i-----------~~-~~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
...+ .+ +.+ ...+...+-|-=+.|......-+...|+....
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~ 144 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY 144 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 2222 11 122 22232244455568888888888888876444
No 264
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.76 E-value=0.0031 Score=55.37 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=58.5
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C-----------------c--c--
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S-----------------Y--P-- 188 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~-----------------~--~-- 188 (286)
..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...-... + . .
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46889999999999999999999999998 6777764321100 0 0 0
Q ss_pred --c--ccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 189 --F--YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 189 --~--~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
. ..++.++++++|+|+.|+. +..++..+++.... .+.-+|+++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 0 1234567788998888764 56667666654443 233455554
No 265
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.75 E-value=0.005 Score=55.92 Aligned_cols=105 Identities=23% Similarity=0.263 Sum_probs=72.2
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC----------cccccCHHHh--hcCCCEEEEeccCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS----------YPFYANVSGL--AADSDVLIVCCALT 210 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~----------~~~~~~l~e~--l~~aDiV~~~lp~~ 210 (286)
....|+++.|+|.|-.+++++..|+..|+ +|++++|+.++... ......+.++ ..++|+||+++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 34678999999999999999999999996 79999998876431 0011222221 22699999999966
Q ss_pred hhhhh---cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 211 EETHH---MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 211 ~~t~~---~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
-.-.. .++ ...++++.++.|+--... ++.=|..|-++|
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 44321 233 556789999999966553 455444444445
No 266
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.75 E-value=0.026 Score=51.01 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC----CC-------EEE
Q 043239 107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF----GC-------SIA 175 (286)
Q Consensus 107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~----g~-------~V~ 175 (286)
+|=-+++.+|+.+|- .+++|...+|.|+|.|.-|..+|+.+... |. +++
T Consensus 4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~ 63 (279)
T cd05312 4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW 63 (279)
T ss_pred HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence 455677788887775 34568899999999999999999999876 76 688
Q ss_pred EECCCCC----C--CCC-----c---c--cccCHHHhhc--CCCEEEEeccCChhhhhcccHHHHhcCC---CCcEEEEc
Q 043239 176 YTSRKKK----P--GVS-----Y---P--FYANVSGLAA--DSDVLIVCCALTEETHHMINKDVMTALG---KEGVIINV 234 (286)
Q Consensus 176 ~~~r~~~----~--~~~-----~---~--~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~~l~~mk---~g~ilvn~ 234 (286)
.+|+..- . ... . . ...+|.|+++ .+|+++-+- ...++++++.+..|. +.++|.=.
T Consensus 64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 8887531 1 110 0 1 2358999999 889887642 124789999999998 88999999
Q ss_pred CCCccc---CHHHHHHHHHhCCeeEEEe
Q 043239 235 GRGALI---DEKELVHFLVRGSLVELVL 259 (286)
Q Consensus 235 srg~~v---d~~al~~al~~~~i~ga~l 259 (286)
|+.... ..++.+++=+..-|.+.+.
T Consensus 140 SNPt~~~E~~pe~a~~~t~G~ai~ATGs 167 (279)
T cd05312 140 SNPTSKAECTAEDAYKWTDGRALFASGS 167 (279)
T ss_pred CCcCCccccCHHHHHHhhcCCEEEEeCC
Confidence 988763 3344444333334665554
No 267
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.75 E-value=0.0023 Score=56.87 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|.+++|+|+|+|.+|..+++.|...|. ++.++|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999997 67777643
No 268
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.75 E-value=0.012 Score=52.32 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=56.8
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKE 228 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g 228 (286)
.++-|+|.|.+++++++.++..|++|+++|..++..... ....++.+....| .+.+..+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~ 162 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPED--------LPDGVATLVTDEP----------EAEVAEAPPG 162 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccccc--------CCCCceEEecCCH----------HHHHhcCCCC
Confidence 489999999999999999999999999998654421110 0123332222111 1222234456
Q ss_pred cEEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239 229 GVIINVGRGALIDEKELVHFLVRGSLVEL 257 (286)
Q Consensus 229 ~ilvn~srg~~vd~~al~~al~~~~i~ga 257 (286)
+.+|=+.++.-.|...|..+|++....+.
T Consensus 163 t~vvi~th~h~~D~~~L~~aL~~~~~~YI 191 (246)
T TIGR02964 163 SYFLVLTHDHALDLELCHAALRRGDFAYF 191 (246)
T ss_pred cEEEEEeCChHHHHHHHHHHHhCCCCcEE
Confidence 66666667777777777777754444333
No 269
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.74 E-value=0.0031 Score=59.66 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=64.0
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHhccC-CCEEEEECCCCCCCC-----C-------cccccCHHH-hhcCCCEEEEeccCC
Q 043239 146 LGGKRVGIVGL-GSIGSEVAKRLVPF-GCSIAYTSRKKKPGV-----S-------YPFYANVSG-LAADSDVLIVCCALT 210 (286)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~-----~-------~~~~~~l~e-~l~~aDiV~~~lp~~ 210 (286)
-..++|+|+|. |.+|+.+.+.|... +++|..+.+....-. . .....+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999995 99999999999987 668876654322211 0 011222222 258899999999853
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239 211 EETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a 248 (286)
. ..+..+.|+.|..+||.|..-..+.++.++.
T Consensus 116 -~-----s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~ 147 (381)
T PLN02968 116 -T-----TQEIIKALPKDLKIVDLSADFRLRDIAEYEE 147 (381)
T ss_pred -H-----HHHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence 2 2344444567899999997766666655543
No 270
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.0024 Score=58.34 Aligned_cols=106 Identities=24% Similarity=0.371 Sum_probs=66.2
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cccc----ccC---HHHhhcCCCEEEEeccCChhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPF----YAN---VSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~----~~~---l~e~l~~aDiV~~~lp~~~~t 213 (286)
.|+.+||+|+|-+|.--.+..+++|++|++.+++.++.+ ++.. ..+ .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 799999999999999999999999999999999864322 2111 111 233445556655554421 1
Q ss_pred hhcccHHHHhcCCCCcEEEEcC------------------------CCcccCHHHHHHHHHhCCee
Q 043239 214 HHMINKDVMTALGKEGVIINVG------------------------RGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~s------------------------rg~~vd~~al~~al~~~~i~ 255 (286)
.+-+ +..+..||++..+|-++ -|+..|++.+++...++.|.
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 1111 23555566666555544 24455666666666666654
No 271
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.72 E-value=0.003 Score=60.39 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc-----ccccCHHHhhcCCCEEEEeccCChhhh--------
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY-----PFYANVSGLAADSDVLIVCCALTEETH-------- 214 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~-----~~~~~l~e~l~~aDiV~~~lp~~~~t~-------- 214 (286)
.++|.|+|+|.+|.++|+.|+..|++|.++|++....... ....+.+....++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 4689999999999999999999999999999865432210 011233344577998887754432211
Q ss_pred --hcccHHH--Hhc--CCCC-cEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 215 --HMINKDV--MTA--LGKE-GVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 215 --~~i~~~~--l~~--mk~g-~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
.++.+.. +.. +.+. .+=|-=+.|......-+...|+..+
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g 128 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG 128 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence 1222211 121 1122 3444445777777777777776543
No 272
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.72 E-value=0.0041 Score=57.93 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=34.2
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK 181 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~ 181 (286)
..|++++|.|||+|.+|..+|+.|...|. ++.++|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46899999999999999999999999998 788888754
No 273
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.69 E-value=0.04 Score=51.30 Aligned_cols=126 Identities=8% Similarity=0.024 Sum_probs=81.9
Q ss_pred HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHH
Q 043239 88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAK 165 (286)
Q Consensus 88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~ 165 (286)
.+...+|+|.|..+...-++ .+|+=++.+..+ .|..+.|++|+++|-+ ++..+++.
T Consensus 118 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~--------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~ 175 (334)
T PRK01713 118 LAEYAGVPVFNGLTDEFHPT--QMLADVLTMIEN--------------------CDKPLSEISYVYIGDARNNMGNSLLL 175 (334)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH--------------------cCCCcCCcEEEEECCCccCHHHHHHH
Confidence 34556899999865433232 223323332221 1223788999999986 68899999
Q ss_pred HhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec----cCCh---h------hhhc
Q 043239 166 RLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC----ALTE---E------THHM 216 (286)
Q Consensus 166 ~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l----p~~~---~------t~~~ 216 (286)
.+..+|++|.+..+..-... + +....+++++++++|+|..-. .... . ....
T Consensus 176 ~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~ 255 (334)
T PRK01713 176 IGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQ 255 (334)
T ss_pred HHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCc
Confidence 99999999998876432211 1 224578999999999998732 1100 1 1234
Q ss_pred ccHHHHhcC-CCCcEEEEcC
Q 043239 217 INKDVMTAL-GKEGVIINVG 235 (286)
Q Consensus 217 i~~~~l~~m-k~g~ilvn~s 235 (286)
++++.++.. |++++|.-+.
T Consensus 256 v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 256 VTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred CCHHHHhccCCCCCEEECCC
Confidence 678888886 7999998875
No 274
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.68 E-value=0.02 Score=55.04 Aligned_cols=106 Identities=15% Similarity=0.236 Sum_probs=71.5
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEE--------ECCCCCCCC---------------------Cc--cccc
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAY--------TSRKKKPGV---------------------SY--PFYA 191 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~--------~~r~~~~~~---------------------~~--~~~~ 191 (286)
+.++.|+||+|=|+|++|+..|+.|...|++|++ ++...-... .+ ....
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 4579999999999999999999999999999988 553211100 00 0011
Q ss_pred CHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCC-CC-cEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 192 NVSGLA-ADSDVLIVCCALTEETHHMINKDVMTALG-KE-GVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 192 ~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk-~g-~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
+.++++ ..|||++-|. +.+.|+.+..+.+. .+ .+++-.+.+ ++..++ .+.|++++|.
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~ 362 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL 362 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE
Confidence 223333 3588887664 67889888877772 22 467777888 455543 4777777775
No 275
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.68 E-value=0.0076 Score=55.46 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHhcc-------CCCEEEEECCCCCCCC--------------------------CcccccC
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVP-------FGCSIAYTSRKKKPGV--------------------------SYPFYAN 192 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~-------~g~~V~~~~r~~~~~~--------------------------~~~~~~~ 192 (286)
-.-++|+|||.|+.|+.+|+.+.. |..+|..|-+..+... ......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 345789999999999999998873 2335555543221100 1123468
Q ss_pred HHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239 193 VSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 193 l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg 237 (286)
+.+++.+||+++..+|. +-+..++ ++...+.|+++..|.+..|
T Consensus 99 l~ea~~dADilvf~vPh-Qf~~~ic-~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPH-QFIPRIC-EQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHHhccCCEEEEeCCh-hhHHHHH-HHHhcccCCCCeEEEeecc
Confidence 99999999999999994 3444444 5788889999999998776
No 276
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.66 E-value=0.0089 Score=53.17 Aligned_cols=104 Identities=26% Similarity=0.403 Sum_probs=70.8
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEEC-CC-------CCCCC---------C--cccc----------cCHH-
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS-RK-------KKPGV---------S--YPFY----------ANVS- 194 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~-r~-------~~~~~---------~--~~~~----------~~l~- 194 (286)
++.|+++.|-|+|.+|+.+|+.|...|.+|++.+ .+ .-... + ...+ .+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 5899999999999999999999999999987652 21 10000 1 1111 1121
Q ss_pred Hhh-cCCCEEEEeccCChhhhhcccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 195 GLA-ADSDVLIVCCALTEETHHMINKDVMT-ALGKEG-VIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 195 e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~-~mk~g~-ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
+++ ..||+++-|. ..+.|+.+... .+++++ +|+-.+.+.+. .++.. .|++++|.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence 455 5799999883 46678888888 887776 66677777765 44444 88888875
No 277
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.62 E-value=0.0082 Score=55.39 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=77.3
Q ss_pred HHHHHHHHhccCCCEEEEECCCCCCC-----------------------CC-------------cccccC--HHHhhcCC
Q 043239 159 IGSEVAKRLVPFGCSIAYTSRKKKPG-----------------------VS-------------YPFYAN--VSGLAADS 200 (286)
Q Consensus 159 iG~~~A~~l~~~g~~V~~~~r~~~~~-----------------------~~-------------~~~~~~--l~e~l~~a 200 (286)
||..+|..+...|++|..+|++++.. .+ .....+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 78999999999999999999987420 00 001112 55788999
Q ss_pred CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
|+|+-++|...+.+..+-.+..+.++++++| +|.-+.+....|.+.+.. .=+..++-.|.+.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~-p~r~~g~Hf~~Pp 142 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAH-PERFLNAHWLNPA 142 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCC-cccEEEEecCCcc
Confidence 9999999999998888878888889999988 566667788888887742 2234556666544
No 278
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.58 E-value=0.0061 Score=54.05 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=33.1
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK 181 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~ 181 (286)
..|++.+|.|+|+|.+|..+|+.|...|. +++.+|...
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 45899999999999999999999999997 677777543
No 279
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0079 Score=56.82 Aligned_cols=91 Identities=25% Similarity=0.463 Sum_probs=67.6
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCC------------------CCC------CcccccCHHHhh-
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK------------------PGV------SYPFYANVSGLA- 197 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~------------------~~~------~~~~~~~l~e~l- 197 (286)
+.++.|+||+|=|+|++|+.+|+.|...|.+|++.+-+.. +.. +.... +-++++
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc
Confidence 4459999999999999999999999999999988775554 100 11111 224444
Q ss_pred cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 043239 198 ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI 240 (286)
Q Consensus 198 ~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v 240 (286)
.+|||.+=|. +.+.|+.+..++++.. +++-.+.+.+.
T Consensus 281 ~~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t 317 (411)
T COG0334 281 VDCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT 317 (411)
T ss_pred ccCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC
Confidence 3689886553 7888999998988876 77888888865
No 280
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.54 E-value=0.021 Score=55.01 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=69.7
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEE-EECCCCC----------CC--------------CCc------cccc
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTSRKKK----------PG--------------VSY------PFYA 191 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~-~~~r~~~----------~~--------------~~~------~~~~ 191 (286)
+.++.|+||.|=|+|++|+..|+.|...|.+|+ +.|.+.. .. ..+ ..+.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 557999999999999999999999999999988 4554410 00 000 0011
Q ss_pred CHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcC-CCCcE-EEEcCCCcccCHHHHHHHHHhCCee
Q 043239 192 NVSGLA-ADSDVLIVCCALTEETHHMINKDVMTAL-GKEGV-IINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 192 ~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~m-k~g~i-lvn~srg~~vd~~al~~al~~~~i~ 255 (286)
+-++++ -.||+.+-|. +.+.|+.+..+.+ +.++. ++--+.+.+.. .-.+.|++++|.
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~--eA~~~L~~~GI~ 371 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI--EATHLFKKNGVI 371 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH--HHHHHHHHCCcE
Confidence 122222 3688887663 6778888877765 55554 55556666544 345677777765
No 281
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.54 E-value=0.0065 Score=56.73 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=56.1
Q ss_pred CEEEEEcC-ChHHHHHHHHhccC-CCEEEE-ECCCCCCCC-----C-cc-----cccCHHH-hhcCCCEEEEeccCChhh
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPF-GCSIAY-TSRKKKPGV-----S-YP-----FYANVSG-LAADSDVLIVCCALTEET 213 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~-g~~V~~-~~r~~~~~~-----~-~~-----~~~~l~e-~l~~aDiV~~~lp~~~~t 213 (286)
++|+|+|. |.+|+.+++.|... ++++.. .++...... + .. .+.++++ ...++|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 68999996 99999999999876 567654 554322110 0 11 1223333 45789999999995422
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 043239 214 HHMINKDVMTALGKEGVIINVGRGALIDE 242 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~srg~~vd~ 242 (286)
..++ ...++.|..+||.|-.--.+.
T Consensus 82 ~~~v----~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA----PQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH----HHHHhCCCEEEECCcccCCCC
Confidence 2222 122357899999985555544
No 282
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.50 E-value=0.017 Score=52.04 Aligned_cols=60 Identities=25% Similarity=0.389 Sum_probs=43.1
Q ss_pred CEEEEEc-CChHHHHHHHHhcc-CCCEEE-EECCCCCCC-------------CCcccccCHHHhhcCCCEEEEecc
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVP-FGCSIA-YTSRKKKPG-------------VSYPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~-------------~~~~~~~~l~e~l~~aDiV~~~lp 208 (286)
.+|+|+| +|.||+.+++.+.. -++++. +++|..... .+...+.+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 4899999 69999999999875 578865 567432211 122335788888567999999875
No 283
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.49 E-value=0.01 Score=55.32 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=42.5
Q ss_pred CEEEEEcCChHHHHHHHHhccC-CCEEEE-ECCCCCCC------------------------CCcccccCHHHhhcCCCE
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF-GCSIAY-TSRKKKPG------------------------VSYPFYANVSGLAADSDV 202 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~-g~~V~~-~~r~~~~~------------------------~~~~~~~~l~e~l~~aDi 202 (286)
.+|||+|+|.||+.+++.+... ++++.+ .+++++.. .+.....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 4899999999999999988754 577764 44332100 011122467788888999
Q ss_pred EEEeccCC
Q 043239 203 LIVCCALT 210 (286)
Q Consensus 203 V~~~lp~~ 210 (286)
|+.|.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998743
No 284
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.48 E-value=0.0043 Score=47.86 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHHHhccCCCEEEEECCCCCCCC--------CcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239 159 IGSEVAKRLVPFGCSIAYTSRKKKPGV--------SYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230 (286)
Q Consensus 159 iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i 230 (286)
-+..+++.|...|++|.+||+...... +.....++++.++.+|+|+++.+ .++-..+--.+....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 467899999999999999998765432 23345789999999999999986 344444434556677888999
Q ss_pred EEEc
Q 043239 231 IINV 234 (286)
Q Consensus 231 lvn~ 234 (286)
|||+
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9998
No 285
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.46 E-value=0.024 Score=52.05 Aligned_cols=96 Identities=23% Similarity=0.205 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccC-
Q 043239 146 LGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCAL- 209 (286)
Q Consensus 146 l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~- 209 (286)
+.|.+|+++|-| ++..+++..+..+|++|.+..+..-... + +....++++.++++|+|..---.
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~ 227 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQK 227 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccc
Confidence 788999999985 9999999999999999998887543211 1 12357899999999999773110
Q ss_pred -----Chh-----hhhcccHHHHhcCCCCcEEEEcC-CCcccC
Q 043239 210 -----TEE-----THHMINKDVMTALGKEGVIINVG-RGALID 241 (286)
Q Consensus 210 -----~~~-----t~~~i~~~~l~~mk~g~ilvn~s-rg~~vd 241 (286)
.++ ...-++++.++.++++++|.-+. ||.=|+
T Consensus 228 er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~ 270 (301)
T TIGR00670 228 ERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEID 270 (301)
T ss_pred cccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccC
Confidence 001 13345778888899999888664 554333
No 286
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.46 E-value=0.0028 Score=52.85 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=48.3
Q ss_pred EEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC---C-------cccccCHHHhhcCCCEEEEeccCChh
Q 043239 151 VGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV---S-------YPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 151 vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---~-------~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
|.|+|. |.+|+.+++.|...|++|.+..|++.+.. + .....++.+.++.+|.|+.+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678994 99999999999999999999999877532 1 11224567788999999999875433
No 287
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.44 E-value=0.0059 Score=60.31 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=66.8
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC--------cccccCHHHhh-cCCCEEEEeccCChh--h
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS--------YPFYANVSGLA-ADSDVLIVCCALTEE--T 213 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~--------~~~~~~l~e~l-~~aDiV~~~lp~~~~--t 213 (286)
.+.++++.|+|.|.+|++++..|...|++|++++|+.++... .....++.+.. ..+|+|+.+.|..-. .
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~ 455 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV 455 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence 577899999999999999999999999999999997654221 11122222222 357888888775421 1
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 214 HH-MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 214 ~~-~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
.. .+. ...++++.+++|+.-.. .++.=|..|-+.|
T Consensus 456 ~~~pl~---~~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 491 (529)
T PLN02520 456 DETPIS---KHALKHYSLVFDAVYTP-KITRLLREAEESG 491 (529)
T ss_pred CCCccc---HhhCCCCCEEEEeccCC-CcCHHHHHHHHCC
Confidence 11 122 23467788899996554 3344444444444
No 288
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.43 E-value=0.0038 Score=54.23 Aligned_cols=70 Identities=26% Similarity=0.276 Sum_probs=51.5
Q ss_pred CCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------C---cccccCHHHhhcCCCEEEEeccCC
Q 043239 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------S---YPFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~---~~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
+...++.|++|.|||.|.+|..=++.|.+.|.+|++++++..+.. . .....+.+ .+..+++|+.++++.
T Consensus 5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~ 83 (210)
T COG1648 5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDE 83 (210)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCH
Confidence 455679999999999999999999999999999999998773221 1 01112333 344599999988754
Q ss_pred h
Q 043239 211 E 211 (286)
Q Consensus 211 ~ 211 (286)
+
T Consensus 84 ~ 84 (210)
T COG1648 84 E 84 (210)
T ss_pred H
Confidence 3
No 289
>PLN02527 aspartate carbamoyltransferase
Probab=96.43 E-value=0.029 Score=51.53 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCC---hHHHHHHHHhccC-CCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEeccC
Q 043239 146 LGGKRVGIVGLG---SIGSEVAKRLVPF-GCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 146 l~g~~vgIiG~G---~iG~~~A~~l~~~-g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp~ 209 (286)
+.|.+|+++|-+ ++..+++..+..+ |++|.+..+..-... + +....++++++++||+|.+..-.
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q 228 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ 228 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence 778999999976 6899999998887 999988876543211 1 22357899999999999884311
Q ss_pred Ch------h------hhhcccHHHHhcCCCCcEEEEcC-CCc
Q 043239 210 TE------E------THHMINKDVMTALGKEGVIINVG-RGA 238 (286)
Q Consensus 210 ~~------~------t~~~i~~~~l~~mk~g~ilvn~s-rg~ 238 (286)
.+ . ....++++.++.++++++|..+. ||.
T Consensus 229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~ 270 (306)
T PLN02527 229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLD 270 (306)
T ss_pred hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcc
Confidence 00 1 12556788888899999888774 554
No 290
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.42 E-value=0.0048 Score=56.69 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=45.8
Q ss_pred CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCCC-------cc--------cccCHHHhhcCCCEEEEeccC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGVS-------YP--------FYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~~-------~~--------~~~~l~e~l~~aDiV~~~lp~ 209 (286)
++|+|||.|.+|..+|..|...| .+|..+|++.+...+ .. ...+. +.+++||+|+++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence 47999999999999999999888 479999987654321 10 01233 568999999999875
No 291
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.41 E-value=0.0064 Score=58.45 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=48.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cc-------ccccCHHHh-hcCCCEEEEeccCChh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SY-------PFYANVSGL-AADSDVLIVCCALTEE 212 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~-------~~~~~l~e~-l~~aDiV~~~lp~~~~ 212 (286)
|+|.|+|+|.+|+.+++.|...|++|++++++++... +. .....++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 4799999999999999999999999999988665321 11 112345555 7889999999885433
No 292
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.40 E-value=0.032 Score=54.33 Aligned_cols=98 Identities=12% Similarity=0.223 Sum_probs=68.1
Q ss_pred cCCCCEEEEEcC----------ChHHHHHHHHhccCCCEEEEECCCCCCCCC---------------------------c
Q 043239 145 TLGGKRVGIVGL----------GSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---------------------------Y 187 (286)
Q Consensus 145 ~l~g~~vgIiG~----------G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---------------------------~ 187 (286)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+....... .
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 557889999999999999999986433110 1
Q ss_pred ccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 043239 188 PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKEL 245 (286)
Q Consensus 188 ~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al 245 (286)
....++.+++++||+|+++..- ++-+.+--+.....|++..+|+|. |+ +.|.+.+
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~ 455 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEW-DEFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKL 455 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCC-hHhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 1234567899999999998763 333433223345667766689996 44 4565444
No 293
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.40 E-value=0.12 Score=47.42 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=83.8
Q ss_pred HhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcC-ChHHHHHHHHh
Q 043239 89 CRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGL-GSIGSEVAKRL 167 (286)
Q Consensus 89 ~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~-G~iG~~~A~~l 167 (286)
+...+++|.|+.+...-++ .+|+=++.+.++ .| .+.|.+|+++|- +++.++++..+
T Consensus 116 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~--------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l 172 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPC--QILADLLTIYEH--------------------RG-SLKGLKVAWVGDGNNVANSLLLAA 172 (304)
T ss_pred HHhCCCCEEeCCCCCCChH--HHHHHHHHHHHH--------------------hC-CcCCcEEEEEeCCCccHHHHHHHH
Confidence 4556899999876443332 233333333222 11 267899999997 88999999999
Q ss_pred ccCCCEEEEECCCCCCCC-----------C--cccccCHHHhhcCCCEEEEe----ccCCh---h-----hhhcccHHHH
Q 043239 168 VPFGCSIAYTSRKKKPGV-----------S--YPFYANVSGLAADSDVLIVC----CALTE---E-----THHMINKDVM 222 (286)
Q Consensus 168 ~~~g~~V~~~~r~~~~~~-----------~--~~~~~~l~e~l~~aDiV~~~----lp~~~---~-----t~~~i~~~~l 222 (286)
..+|++|.+..+..-... + +....+++++++++|+|..- ..... + ...-++++.+
T Consensus 173 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l 252 (304)
T PRK00779 173 ALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELM 252 (304)
T ss_pred HHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHH
Confidence 999999988876543221 1 22357999999999999874 11101 1 2344678888
Q ss_pred hcCCCCcEEEEcC
Q 043239 223 TALGKEGVIINVG 235 (286)
Q Consensus 223 ~~mk~g~ilvn~s 235 (286)
+.+|++++|.-+.
T Consensus 253 ~~~~~~~ivmHpl 265 (304)
T PRK00779 253 ALAKPDAIFMHCL 265 (304)
T ss_pred HhcCCCeEEecCC
Confidence 8899999988875
No 294
>PRK11579 putative oxidoreductase; Provisional
Probab=96.39 E-value=0.02 Score=53.32 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=45.1
Q ss_pred CEEEEEcCChHHHH-HHHHhccC-CCEEE-EECCCCCCCC----CcccccCHHHhhc--CCCEEEEeccCC
Q 043239 149 KRVGIVGLGSIGSE-VAKRLVPF-GCSIA-YTSRKKKPGV----SYPFYANVSGLAA--DSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~G~iG~~-~A~~l~~~-g~~V~-~~~r~~~~~~----~~~~~~~l~e~l~--~aDiV~~~lp~~ 210 (286)
.+|||||+|.||+. .+..+... ++++. +++++.++.. ....+.+++++++ +.|+|++|+|..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence 48999999999985 56666543 67875 5777654321 2335689999996 479999999854
No 295
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.39 E-value=0.019 Score=54.86 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=62.2
Q ss_pred CCCCEEEEEcC----------ChHHHHHHHHhccCCCEEEEECCCCCCCC--CcccccCHHHhhcCCCEEEEeccCChhh
Q 043239 146 LGGKRVGIVGL----------GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SYPFYANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 146 l~g~~vgIiG~----------G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
+.|++|+|+|+ ..-...+++.|...|.+|.+||+...... ......++++.++++|.|+++..- ++-
T Consensus 311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~-~~~ 389 (411)
T TIGR03026 311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDH-DEF 389 (411)
T ss_pred ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCC-HHH
Confidence 68999999998 45788999999999999999998754322 122247888999999999998763 333
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q 043239 214 HHMINKDVMTALGKEGVIINV 234 (286)
Q Consensus 214 ~~~i~~~~l~~mk~g~ilvn~ 234 (286)
+.+--+.....|+ ..+++|.
T Consensus 390 ~~~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 390 KDLDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred hccCHHHHHHhcC-CCEEEeC
Confidence 3332223334455 4578885
No 296
>PRK05086 malate dehydrogenase; Provisional
Probab=96.37 E-value=0.019 Score=52.87 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=56.7
Q ss_pred CEEEEEcC-ChHHHHHHHHhc---cCCCEEEEECCCCCCC----C----C-ccc-----ccCHHHhhcCCCEEEEeccCC
Q 043239 149 KRVGIVGL-GSIGSEVAKRLV---PFGCSIAYTSRKKKPG----V----S-YPF-----YANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~---~~g~~V~~~~r~~~~~----~----~-~~~-----~~~l~e~l~~aDiV~~~lp~~ 210 (286)
++|+|||. |.+|..++..+. ..+..+..+++++... + . ... ..++.+.++++|+|+++.-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998773 3445788888764331 0 1 010 245667889999999986532
Q ss_pred hh---hh-hc------ccHHHHhcC---CCCcEEEEcCCCc
Q 043239 211 EE---TH-HM------INKDVMTAL---GKEGVIINVGRGA 238 (286)
Q Consensus 211 ~~---t~-~~------i~~~~l~~m---k~g~ilvn~srg~ 238 (286)
.. ++ .+ +-++..+.| .+.+++++++...
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 11 01 11 112333333 5678999996654
No 297
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.34 E-value=0.036 Score=51.62 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=68.0
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l 207 (286)
.+.|.+|+++|- .++..+++..+..+|++|.+..+..-... + +....+++++++++|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 488999999996 68899999999999999998876542211 1 223578999999999998822
Q ss_pred -----cCCh---h------hhhcccHHHHhcCCCCcEEEEcC
Q 043239 208 -----ALTE---E------THHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 208 -----p~~~---~------t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
.... + ....++++.++.+|++++|.-+.
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 1100 1 12567889999999999998885
No 298
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.34 E-value=0.013 Score=53.94 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=68.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------------CC----cccccCHHHhhcCCCEEEEeccCChh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------------VS----YPFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------------~~----~~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
++|.|+|.|.||.-++.+|...|..|+.+.|++... .+ ......-.+.+..+|+|++++... +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 589999999999999999999998888888876410 01 011223335567899999998643 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
+...+ +...+.+++.+.++-+-.|= =..+.+-+...+.++
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~i 119 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETV 119 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceE
Confidence 44443 45667778887777665552 233355555555533
No 299
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.32 E-value=0.045 Score=49.82 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=77.8
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCC--CCCCCCcccccCHHHhhcCCCEEEEeccCChhhh----------h
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRK--KKPGVSYPFYANVSGLAADSDVLIVCCALTEETH----------H 215 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~--~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~----------~ 215 (286)
|++++|||--.--..+++.|...|++|..+.-. ...-.+.....+.++.++++|+|++=+|.+.... -
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 679999999999999999999999998766543 2222344445566667999999999999665421 1
Q ss_pred cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeeccCCC
Q 043239 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCLRTS 265 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~~~e 265 (286)
.++++.+.+|+++++ +-+| ++..++-++.++++|. ..|.++.+
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~~~ 123 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFERD 123 (287)
T ss_pred cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEecc
Confidence 246789999998665 4444 3445555677778876 45544444
No 300
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.29 E-value=0.0067 Score=55.13 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCC--------c----ccccC---HHHhhcCCCEEEEeccC
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVS--------Y----PFYAN---VSGLAADSDVLIVCCAL 209 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~--------~----~~~~~---l~e~l~~aDiV~~~lp~ 209 (286)
+.++++.|+|.|-.|++++-.|...|+ +|++++|+.++... . ....+ +.+.+..+|+|+.+.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 557899999999999999999999998 79999998754321 0 01112 23456789999999986
Q ss_pred Chhhh--hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 210 TEETH--HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 210 ~~~t~--~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
.-... ..++. ..+.++.++.|+--.. ..+.-|..|-+.|
T Consensus 205 Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 245 (283)
T PRK14027 205 GMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALG 245 (283)
T ss_pred CCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCC
Confidence 53211 11222 3466788899986544 4444444454444
No 301
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.28 E-value=0.071 Score=54.62 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=90.8
Q ss_pred CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239 93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC 172 (286)
Q Consensus 93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~ 172 (286)
+|++.|.- . .-+|=-+++.+++.+|- .++++...+|.|.|.|.-|..+++.|...|.
T Consensus 153 ~ip~f~DD-~--~GTa~v~lA~l~na~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 153 DIPVFHDD-Q--HGTAIISAAALLNALEL--------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred CCCeeccc-c--chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 67888763 2 24666677888887765 3567889999999999999999999999888
Q ss_pred ---EEEEECCCCC----C---CCC-------cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 173 ---SIAYTSRKKK----P---GVS-------YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 173 ---~V~~~~r~~~----~---~~~-------~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
+++.+|+..- . ... .....+|.|+++.+|+++-. . ..++++++.+..|.+.+++.=.|
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals 284 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA 284 (752)
T ss_pred CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence 6888886431 1 110 11235899999999988653 2 25799999999999999999999
Q ss_pred CCcc
Q 043239 236 RGAL 239 (286)
Q Consensus 236 rg~~ 239 (286)
....
T Consensus 285 NP~~ 288 (752)
T PRK07232 285 NPDP 288 (752)
T ss_pred CCCc
Confidence 8875
No 302
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.28 E-value=0.0018 Score=52.60 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=45.2
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEecc
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp 208 (286)
++|+|||. |.+|..+|..|...+. ++..+|+...... ......+..+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 48999999 9999999999886654 7999998754322 01122355678899999999863
No 303
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.23 E-value=0.0079 Score=48.64 Aligned_cols=86 Identities=14% Similarity=0.290 Sum_probs=49.3
Q ss_pred EEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcE
Q 043239 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230 (286)
Q Consensus 151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~i 230 (286)
+.|+|.|.+++++++.++.+|++|+++|..++. +..++-+. +.+. ..+. +.+ .+.+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~~-~~~~----~~~~--~~~-~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEVI-CIPP----DDIL--EDL-EIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEEE-CSHH----HHHH--HHC--S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCccE-ecCh----HHHH--hcc-CCCCCeE
Confidence 468999999999999999999999999876432 12334332 2221 1110 111 3455555
Q ss_pred EEEcCCCcccCHHHHHHHHHhCCeeEEEe
Q 043239 231 IINVGRGALIDEKELVHFLVRGSLVELVL 259 (286)
Q Consensus 231 lvn~srg~~vd~~al~~al~~~~i~ga~l 259 (286)
+| +.++.-.|...|..+|++ ...+.++
T Consensus 60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 60 VV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp EE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred EE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 55 777877888777777776 4555544
No 304
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.23 E-value=0.0042 Score=58.63 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=43.8
Q ss_pred EEEEcCChHHHHHHHHhccCC-C-EEEEECCCCCCCC---------C-------cccccCHHHhhcCCCEEEEeccCC
Q 043239 151 VGIVGLGSIGSEVAKRLVPFG-C-SIAYTSRKKKPGV---------S-------YPFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 151 vgIiG~G~iG~~~A~~l~~~g-~-~V~~~~r~~~~~~---------~-------~~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
|+|+|.|.+|+.+++.|...+ . +|++.+|+.++.. . .....++.++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999999999999999876 4 8999999876521 1 111234778999999999999743
No 305
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.19 E-value=0.018 Score=50.06 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=33.0
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|++.+|+|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45889999999999999999999999998 58888765
No 306
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.15 E-value=0.013 Score=53.76 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=63.7
Q ss_pred EEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCC----------Cc----cc--ccCHHHhhcCCCEEEEeccCChh
Q 043239 151 VGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGV----------SY----PF--YANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 151 vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~----------~~----~~--~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
|+|||.|.+|..+|..+...| .++..+|+..+... .. .. ..+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998878 47999998775432 10 11 123 4688999999998753211
Q ss_pred ---hh--------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCeeEE
Q 043239 213 ---TH--------HMIN--KDVMTALGKEGVIINVGRGALIDEKELVHF--LVRGSLVEL 257 (286)
Q Consensus 213 ---t~--------~~i~--~~~l~~mk~g~ilvn~srg~~vd~~al~~a--l~~~~i~ga 257 (286)
++ .++. ...+....|.+++++++...=+-...+.+. +...++.|.
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~ 139 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGS 139 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEec
Confidence 11 1111 012223357889999974432333333333 334455444
No 307
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.15 E-value=0.0042 Score=48.08 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=51.0
Q ss_pred EEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHH-hhcCCCEEEEeccCChhhhhcc
Q 043239 151 VGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSG-LAADSDVLIVCCALTEETHHMI 217 (286)
Q Consensus 151 vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e-~l~~aDiV~~~lp~~~~t~~~i 217 (286)
|.|+|+|.+|+.+++.|+..+.+|++.+++++... +.. ....+++ -++++|.|+++.+....+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~- 79 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI- 79 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence 57999999999999999997779999988765321 211 1122333 268899999988754333322
Q ss_pred cHHHHhcCCCCcEEE
Q 043239 218 NKDVMTALGKEGVII 232 (286)
Q Consensus 218 ~~~~l~~mk~g~ilv 232 (286)
...+..+.+...++
T Consensus 80 -~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 80 -ALLARELNPDIRII 93 (116)
T ss_dssp -HHHHHHHTTTSEEE
T ss_pred -HHHHHHHCCCCeEE
Confidence 34445445554444
No 308
>PRK08223 hypothetical protein; Validated
Probab=96.13 E-value=0.018 Score=52.31 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|++.+|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46899999999999999999999999998 67777754
No 309
>PRK08328 hypothetical protein; Provisional
Probab=96.13 E-value=0.015 Score=51.19 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=33.3
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK 181 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~ 181 (286)
..|.+++|.|+|+|.+|..+++.|...|. ++.++|...
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46899999999999999999999999998 687887543
No 310
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.12 E-value=0.19 Score=46.21 Aligned_cols=125 Identities=13% Similarity=0.142 Sum_probs=83.7
Q ss_pred HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcC-ChHHHHHHHH
Q 043239 88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGL-GSIGSEVAKR 166 (286)
Q Consensus 88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~-G~iG~~~A~~ 166 (286)
.++..+|+|.|+.+...-++ .+|+=++.+.++ .| .+.|.+|+++|- +++.++++..
T Consensus 111 ~a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~--------------------~g-~l~g~~v~~vGd~~~v~~Sl~~~ 167 (304)
T TIGR00658 111 LAKYASVPVINGLTDLFHPC--QALADLLTIIEH--------------------FG-KLKGVKVVYVGDGNNVCNSLMLA 167 (304)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH--------------------hC-CCCCcEEEEEeCCCchHHHHHHH
Confidence 34556899999866443333 233333332222 11 277899999996 7899999999
Q ss_pred hccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec--cCC-----h-----hhhhccc
Q 043239 167 LVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC--ALT-----E-----ETHHMIN 218 (286)
Q Consensus 167 l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l--p~~-----~-----~t~~~i~ 218 (286)
+..+|++|.+..+..-... + +....+++++++++|+|.+-. ... + .....++
T Consensus 168 l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~ 247 (304)
T TIGR00658 168 GAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVN 247 (304)
T ss_pred HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCC
Confidence 9999999988876443221 1 223578999999999998742 100 0 1234578
Q ss_pred HHHHhcCCCCcEEEEcC
Q 043239 219 KDVMTALGKEGVIINVG 235 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~s 235 (286)
++.++.+|++++|.-+.
T Consensus 248 ~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 248 EELMELAKPEVIFMHCL 264 (304)
T ss_pred HHHHhhcCCCCEEECCC
Confidence 88899999999988885
No 311
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.12 E-value=0.035 Score=53.38 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=68.3
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccc--cccCHHHhhcCCCEEEEeccCChh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYP--FYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~--~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
++.++++.|+|.|.+|.++|+.|...|++|+++++...... +.. .....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 36789999999999999999999999999999998752210 111 112233556789999887543333
Q ss_pred hhhcc----------cH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 213 THHMI----------NK-DVMTA-LGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 213 t~~~i----------~~-~~l~~-mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
...+. .. +.+.. .+...+-|-=+.|.....+-|...|+..
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 22111 10 11122 2322333444688888888888888764
No 312
>PLN02602 lactate dehydrogenase
Probab=96.12 E-value=0.025 Score=52.97 Aligned_cols=88 Identities=17% Similarity=0.358 Sum_probs=56.7
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC--------------cccc--cCHHHhhcCCCEEEEeccCC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS--------------YPFY--ANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~--------------~~~~--~~l~e~l~~aDiV~~~lp~~ 210 (286)
++|+|||.|.+|..+|-.+...+. ++..+|...+...+ .... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999887665 78899987654321 0111 233 4489999999984321
Q ss_pred h---hhh-hcc--c----HH---HHhcCCCCcEEEEcCCC
Q 043239 211 E---ETH-HMI--N----KD---VMTALGKEGVIINVGRG 237 (286)
Q Consensus 211 ~---~t~-~~i--~----~~---~l~~mk~g~ilvn~srg 237 (286)
. .++ .++ | ++ .+....|.+++|+++..
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNP 156 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP 156 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 1 122 111 1 11 22334678899999744
No 313
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.11 E-value=0.025 Score=50.48 Aligned_cols=122 Identities=21% Similarity=0.211 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccC----CC-------EEE
Q 043239 107 GADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF----GC-------SIA 175 (286)
Q Consensus 107 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~----g~-------~V~ 175 (286)
+|--+++.+|+.+|- .+++|+..+|.|+|.|..|..+|+.+... |. +++
T Consensus 4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~ 63 (255)
T PF03949_consen 4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW 63 (255)
T ss_dssp HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence 455677788887776 34568999999999999999999999877 87 478
Q ss_pred EECCCC----CCCC-------------CcccccCHHHhhcCC--CEEEEeccCChhhhhcccHHHHhcCCC---CcEEEE
Q 043239 176 YTSRKK----KPGV-------------SYPFYANVSGLAADS--DVLIVCCALTEETHHMINKDVMTALGK---EGVIIN 233 (286)
Q Consensus 176 ~~~r~~----~~~~-------------~~~~~~~l~e~l~~a--DiV~~~lp~~~~t~~~i~~~~l~~mk~---g~ilvn 233 (286)
.+|+.. .... ......+|.|+++.+ |+++-+- ...+.++++.+..|.+ .++|.=
T Consensus 64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence 787642 1110 011124899999999 9887652 1577899999999976 889999
Q ss_pred cCCCcccCHHHHHHHHHhC
Q 043239 234 VGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 234 ~srg~~vd~~al~~al~~~ 252 (286)
.|+...--|-.-.++.+-+
T Consensus 140 LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 140 LSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp -SSSCGGSSS-HHHHHHTT
T ss_pred CCCCCCcccCCHHHHHhhC
Confidence 9988774444444444443
No 314
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=96.09 E-value=0.072 Score=49.62 Aligned_cols=91 Identities=8% Similarity=0.050 Sum_probs=65.7
Q ss_pred cCCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEe
Q 043239 145 TLGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVC 206 (286)
Q Consensus 145 ~l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~ 206 (286)
.+.|.+|+++|-+ ++..+++..+..+|+++.+..+..-... + +....+++++++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4788999999976 6899999999999999988876543211 1 22357899999999999874
Q ss_pred c----cCC---------hhhhhcccHHHHhcC-CCCcEEEEcC
Q 043239 207 C----ALT---------EETHHMINKDVMTAL-GKEGVIINVG 235 (286)
Q Consensus 207 l----p~~---------~~t~~~i~~~~l~~m-k~g~ilvn~s 235 (286)
. ... .-....++++.++.. |++++|.-+.
T Consensus 233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 1 100 002344677888874 7889888875
No 315
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.08 E-value=0.013 Score=55.16 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=44.0
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-C-c-----cccc---CHHHhhcCCCEEEE
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-S-Y-----PFYA---NVSGLAADSDVLIV 205 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~-~-----~~~~---~l~e~l~~aDiV~~ 205 (286)
.++|||||.|..|+.++..++.+|++|.++++++.... . . ..+. .+.++++.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 37899999999999999999999999999998654421 0 0 0122 36667889998754
No 316
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.07 E-value=0.0084 Score=56.26 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=32.8
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|++++|.|+|+|.+|..+++.|...|. ++.++|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 67777754
No 317
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=96.07 E-value=0.0041 Score=56.47 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=67.9
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------------------Ccccc----------cCH
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------------SYPFY----------ANV 193 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------------~~~~~----------~~l 193 (286)
+-...+.++.++|+|..|...+-.....|+-|..++-.....+ ++... .-+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 3456778899999999999999999999998888775443211 11011 123
Q ss_pred HHhhcCCCEEEEe--ccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 194 SGLAADSDVLIVC--CALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 194 ~e~l~~aDiV~~~--lp~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
.+.+++.||||.. +|..+. ..++.+++...||||+++||.+
T Consensus 239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 4567899999875 565544 4578899999999999999985
No 318
>PRK12862 malic enzyme; Reviewed
Probab=96.05 E-value=0.087 Score=54.20 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=91.5
Q ss_pred CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhccCCC
Q 043239 93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC 172 (286)
Q Consensus 93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~ 172 (286)
+|++.|.- . .-+|=-+++.+++.+|- .|+.+...+|.|.|.|.-|..+|+.|...|.
T Consensus 161 ~ip~f~DD-~--~GTa~v~la~l~~a~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 217 (763)
T PRK12862 161 KIPVFHDD-Q--HGTAIIVAAALLNGLKL--------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGV 217 (763)
T ss_pred CCceEecC-c--ccHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCC
Confidence 68888863 2 35666778888887775 3567889999999999999999999999898
Q ss_pred ---EEEEECCCCC-----C--CCC-------cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 173 ---SIAYTSRKKK-----P--GVS-------YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 173 ---~V~~~~r~~~-----~--~~~-------~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
+++.+|+..- . ... .....+|.|+++.+|+++-+ . +.++++++.+..|.+.+++.=+|
T Consensus 218 ~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals 292 (763)
T PRK12862 218 KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGL-S----AAGVLKPEMVKKMAPRPLIFALA 292 (763)
T ss_pred CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEeCC
Confidence 6888885421 1 110 01235899999999988654 2 25799999999999999999999
Q ss_pred CCcc
Q 043239 236 RGAL 239 (286)
Q Consensus 236 rg~~ 239 (286)
....
T Consensus 293 NP~~ 296 (763)
T PRK12862 293 NPTP 296 (763)
T ss_pred CCcc
Confidence 8774
No 319
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.04 E-value=0.0083 Score=56.61 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=55.4
Q ss_pred cccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------------------------------C--cc-
Q 043239 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------------------------------S--YP- 188 (286)
Q Consensus 143 ~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------------------------------~--~~- 188 (286)
...|.+.+|.|+|+|.+|..+++.|...|. ++.++|...-... . ..
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence 356899999999999999999999999997 7888875421100 0 00
Q ss_pred -----cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh
Q 043239 189 -----FYANVSGLAADSDVLIVCCALTEETHHMINKDVMT 223 (286)
Q Consensus 189 -----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~ 223 (286)
...+..++++++|+|+.|+ ++.+++.++++.-..
T Consensus 116 ~~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~ 154 (370)
T PRK05600 116 LRERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI 154 (370)
T ss_pred eeeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 0124556788899887665 456777777654433
No 320
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=96.04 E-value=0.15 Score=47.82 Aligned_cols=91 Identities=12% Similarity=0.173 Sum_probs=64.3
Q ss_pred cCCCCEEEEEcCC--------hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCC
Q 043239 145 TLGGKRVGIVGLG--------SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADS 200 (286)
Q Consensus 145 ~l~g~~vgIiG~G--------~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~a 200 (286)
.+.|++|+|+|.| ++.++++..+..+|++|.+..+..-... + +....+++++++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 4557888889999999998887542211 1 12357899999999
Q ss_pred CEEEEec----c----------CCh-----------------hhhhcccHHHHhcCC-CCcEEEEcC
Q 043239 201 DVLIVCC----A----------LTE-----------------ETHHMINKDVMTALG-KEGVIINVG 235 (286)
Q Consensus 201 DiV~~~l----p----------~~~-----------------~t~~~i~~~~l~~mk-~g~ilvn~s 235 (286)
|+|..-. . ..+ -....++++.++.+| ++++|.-+.
T Consensus 247 Dvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcL 313 (357)
T TIGR03316 247 DIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCL 313 (357)
T ss_pred CEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCC
Confidence 9997752 1 000 013346888888888 888888884
No 321
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.02 E-value=0.0092 Score=57.88 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=50.9
Q ss_pred CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------C-cc--cccCHHHhhcCCCEEEEeccCC
Q 043239 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------S-YP--FYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~-~~--~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
++..-++.|++|.|||.|.++..=++.|..+|++|+++++.-.+.. + .. .-.=..+.+..+++|+.++.+.
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 3556689999999999999999999999999999999987543321 0 00 0001134568899888886543
No 322
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.97 E-value=0.018 Score=53.77 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=33.7
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|..++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999998 88888875
No 323
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.97 E-value=0.041 Score=51.34 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=63.2
Q ss_pred CEEEEEcCChHHHHHHHHhccC----------CCEEE-EECCCCC-------CC---------CC-cc------cccCHH
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF----------GCSIA-YTSRKKK-------PG---------VS-YP------FYANVS 194 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~----------g~~V~-~~~r~~~-------~~---------~~-~~------~~~~l~ 194 (286)
.+|+|+|+|.||+.+++.+... +++|. +.|++.. .. .+ .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4899999999999999998754 46655 4554321 00 00 00 123778
Q ss_pred Hhhc--CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCee
Q 043239 195 GLAA--DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSLV 255 (286)
Q Consensus 195 e~l~--~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~ 255 (286)
+++. +.|+|+.|+|....+...-..-....|+.|.-+|-...+.+ ...+.|.+..++.+..
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 8874 68999999885433211111223445667766665433332 2456777777665543
No 324
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.92 E-value=0.073 Score=46.96 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=72.4
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-------------C-----------------cc-----
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-------------S-----------------YP----- 188 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-------------~-----------------~~----- 188 (286)
.|.+++|.|+|+|.+|..+++.|...|. +++.+|...-... + ..
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 4788999999999999999999999898 7777774321100 0 00
Q ss_pred ---cccCHHHhh-cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC-----------------HHHHHH
Q 043239 189 ---FYANVSGLA-ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID-----------------EKELVH 247 (286)
Q Consensus 189 ---~~~~l~e~l-~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~vd-----------------~~al~~ 247 (286)
...+..+++ .+.|+|+.|+- +...+..+++....+ .-.+|...+-|.-.| .+.+-+
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD-~~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~ 164 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAID-SIRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK 164 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCC-CHHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence 012345555 36899988864 334443333322221 123444455554333 345667
Q ss_pred HHHhCCeeEEEeeccCCCCCC
Q 043239 248 FLVRGSLVELVLMCLRTSLMC 268 (286)
Q Consensus 248 al~~~~i~ga~lDv~~~e~~~ 268 (286)
.|++.++..-.-=||..|++.
T Consensus 165 ~Lrk~~~~~~~~~v~S~E~~~ 185 (231)
T cd00755 165 RLRKRGIFFGVPVVYSTEPPD 185 (231)
T ss_pred HHHHcCCCCCeEEEeCCCCCC
Confidence 888888862234467777543
No 325
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.89 E-value=0.018 Score=60.88 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=45.4
Q ss_pred CCCEEEEEcCChHHHHHHHHhccC-CCE-------------EEEECCCCCCCC-------Cc---cc-ccCHHH---hhc
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPF-GCS-------------IAYTSRKKKPGV-------SY---PF-YANVSG---LAA 198 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~-g~~-------------V~~~~r~~~~~~-------~~---~~-~~~l~e---~l~ 198 (286)
..++|+|||.|.||+..|+.|... +.+ |.+.|++.+... +. .. +.+.++ +++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999764 233 788887764321 11 11 334444 457
Q ss_pred CCCEEEEeccCC
Q 043239 199 DSDVLIVCCALT 210 (286)
Q Consensus 199 ~aDiV~~~lp~~ 210 (286)
++|+|++|+|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999963
No 326
>PRK07411 hypothetical protein; Validated
Probab=95.88 E-value=0.019 Score=54.61 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|+..+|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46899999999999999999999999998 67777753
No 327
>PRK06153 hypothetical protein; Provisional
Probab=95.87 E-value=0.021 Score=53.82 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=31.9
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR 179 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r 179 (286)
.|++++|+|||+|..|..++..|...|. ++..+|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 6899999999999999999999999998 7887774
No 328
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.078 Score=50.97 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=67.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc--cCHHHhhcC-CCEEEEec--cCC-
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY--ANVSGLAAD-SDVLIVCC--ALT- 210 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~--~~l~e~l~~-aDiV~~~l--p~~- 210 (286)
+.|+++.|+|.|.+|.++|+.|...|++|+++|++..... +.... ....+++.. .|+|+..- |.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 6789999999999999999999999999999987643211 11111 122344444 89887753 222
Q ss_pred hh-------hhhcccHH-HHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 211 EE-------THHMINKD-VMTAL-GKEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 211 ~~-------t~~~i~~~-~l~~m-k~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
+. ...++.+. .+..+ +...+-|-=+.|......-+...|+...
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 11 01223222 22233 3234445556888888888888887643
No 329
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.83 E-value=0.036 Score=46.62 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=28.0
Q ss_pred EEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK 181 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~ 181 (286)
+|+|+|+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 588887654
No 330
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.83 E-value=0.0094 Score=59.82 Aligned_cols=84 Identities=18% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHh-hcCCCEEEEeccCChhhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGL-AADSDVLIVCCALTEETH 214 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~t~ 214 (286)
..++.|+|+|++|+.+++.|...|.++++.|.+++... +.. ..+.++++ +.+||.+++++++.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 45799999999999999999999999999998776432 111 11223332 678999999998766555
Q ss_pred hcccHHHHhcCCCCcEEEE
Q 043239 215 HMINKDVMTALGKEGVIIN 233 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn 233 (286)
.++ ....++.|...++-
T Consensus 480 ~i~--~~~r~~~p~~~Iia 496 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILA 496 (601)
T ss_pred HHH--HHHHHHCCCCeEEE
Confidence 443 23444555555543
No 331
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.83 E-value=0.019 Score=49.37 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=33.0
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
+.|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999999999999999999999998 58888754
No 332
>PRK15076 alpha-galactosidase; Provisional
Probab=95.80 E-value=0.012 Score=56.68 Aligned_cols=109 Identities=11% Similarity=0.044 Sum_probs=68.3
Q ss_pred CEEEEEcCChHHHHHHH--Hh---ccC-CCEEEEECCCCCCCC-------------C----cccccCHHHhhcCCCEEEE
Q 043239 149 KRVGIVGLGSIGSEVAK--RL---VPF-GCSIAYTSRKKKPGV-------------S----YPFYANVSGLAADSDVLIV 205 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~--~l---~~~-g~~V~~~~r~~~~~~-------------~----~~~~~~l~e~l~~aDiV~~ 205 (286)
++|+|||.|.+|...+- .+ .++ +.+|+.+|...+... + .....++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955443 22 222 558999998765422 1 1124577899999999999
Q ss_pred eccCChhh-h------------------hc----------cc----HH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 043239 206 CCALTEET-H------------------HM----------IN----KD---VMTALGKEGVIINVGRGALIDEKELVHFL 249 (286)
Q Consensus 206 ~lp~~~~t-~------------------~~----------i~----~~---~l~~mk~g~ilvn~srg~~vd~~al~~al 249 (286)
++-..... . .. -+ .+ .+....|++++||.+...-+-+.++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 86643111 1 00 00 11 22334689999999988766666666 33
Q ss_pred HhCCeeEEE
Q 043239 250 VRGSLVELV 258 (286)
Q Consensus 250 ~~~~i~ga~ 258 (286)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 445666654
No 333
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.77 E-value=0.055 Score=51.89 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=67.1
Q ss_pred cCCCCEEEEEcC---ChHHHHHHHHhccC-CCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEecc
Q 043239 145 TLGGKRVGIVGL---GSIGSEVAKRLVPF-GCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp 208 (286)
.+.|++|+++|- +++..+++..+..+ |++|.+..+..-... + +....+++++++++|+|....-
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI 317 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 478999999998 58999999998876 999988876543211 1 2235899999999999987442
Q ss_pred CCh----h------hhhcccHHHHhc-CCCCcEEEEcC
Q 043239 209 LTE----E------THHMINKDVMTA-LGKEGVIINVG 235 (286)
Q Consensus 209 ~~~----~------t~~~i~~~~l~~-mk~g~ilvn~s 235 (286)
..+ . ....++++.++. .|++++|.-+.
T Consensus 318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 100 0 124568888888 89999988774
No 334
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.75 E-value=0.043 Score=50.55 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=51.9
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCC
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALG 226 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk 226 (286)
.+|+|+| .|-.|+.+.+.|..... ++.....+..... .+.++.++++|++++|+|.. ....+. .+. .+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~-~s~~~~-~~~---~~ 72 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDD-AAREAV-ALI---DN 72 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHH-HHHHHH-HHH---Hh
Confidence 5899999 79999999999998754 5554433322211 23345678899999999854 222222 122 25
Q ss_pred CCcEEEEcC
Q 043239 227 KEGVIINVG 235 (286)
Q Consensus 227 ~g~ilvn~s 235 (286)
.|..+||.|
T Consensus 73 ~g~~VIDlS 81 (313)
T PRK11863 73 PATRVIDAS 81 (313)
T ss_pred CCCEEEECC
Confidence 688999998
No 335
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.75 E-value=0.01 Score=58.92 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=55.2
Q ss_pred CEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHh-hcCCCEEEEeccCChhhhh
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGL-AADSDVLIVCCALTEETHH 215 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~-l~~aDiV~~~lp~~~~t~~ 215 (286)
-++.|+|+|++|+.+|+.|+..|++|++.|.+++... +.. ..+.++++ ++++|.+++++++..++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 5789999999999999999999999999998765432 111 11122222 5789999999887666554
Q ss_pred cccHHHHhcCCCCcEEE
Q 043239 216 MINKDVMTALGKEGVII 232 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilv 232 (286)
++.. ..+ +.+...+|
T Consensus 498 iv~~-~~~-~~~~~~ii 512 (558)
T PRK10669 498 IVAS-ARE-KRPDIEII 512 (558)
T ss_pred HHHH-HHH-HCCCCeEE
Confidence 4432 222 34454444
No 336
>PRK12861 malic enzyme; Reviewed
Probab=95.74 E-value=0.1 Score=53.45 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=100.8
Q ss_pred ccEEEEcCCCCCcCCh---------hHHhhc-CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239 71 LEIVVGSTAGIDHVDL---------QECRRR-GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140 (286)
Q Consensus 71 Lk~i~~~~~G~d~id~---------~~~~~~-gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~ 140 (286)
++.+...+.|++.=|+ +.++++ .|++.|.- . .-+|=-+++.+++.+|-
T Consensus 125 v~a~~~~fg~i~lED~~~p~~f~il~~~~~~~~ipvf~DD-~--qGTa~v~lA~llnal~~------------------- 182 (764)
T PRK12861 125 IAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDD-Q--HGTAITVSAAFINGLKV------------------- 182 (764)
T ss_pred HHHHHhhcCCceeeeccCchHHHHHHHHHhcCCCCeeccc-c--chHHHHHHHHHHHHHHH-------------------
Confidence 4555555555554332 223332 68888863 2 24666778888887775
Q ss_pred CCcccCCCCEEEEEcCChHHHHHHHHhccCCC---EEEEECCCC-----CC--CCC-------cccccCHHHhhcCCCEE
Q 043239 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC---SIAYTSRKK-----KP--GVS-------YPFYANVSGLAADSDVL 203 (286)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~r~~-----~~--~~~-------~~~~~~l~e~l~~aDiV 203 (286)
.++++...+|.|.|.|..|..+++.|...|. +++.+|+.. .. ... .....+|.|+++.+|++
T Consensus 183 -~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advl 261 (764)
T PRK12861 183 -VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVF 261 (764)
T ss_pred -hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEE
Confidence 3567889999999999999999999999998 688888543 11 110 11236899999999987
Q ss_pred EEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239 204 IVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL 239 (286)
Q Consensus 204 ~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~ 239 (286)
+-+ . ..++++++.+..|.+.+++.=.|....
T Consensus 262 iG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtp 292 (764)
T PRK12861 262 LGL-S----AGGVLKAEMLKAMAARPLILALANPTP 292 (764)
T ss_pred EEc-C----CCCCCCHHHHHHhccCCEEEECCCCCc
Confidence 553 3 258999999999999999999988764
No 337
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.73 E-value=0.092 Score=48.63 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=59.3
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC-------c--------ccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS-------Y--------PFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~-------~--------~~~~~l~e~l~~aDiV 203 (286)
++|+|||. |.+|..+|..|...|. ++..+|..... ..+ . ....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999999886655 68888884332 210 0 1113445788999999
Q ss_pred EEeccCCh---hhhh--------cc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239 204 IVCCALTE---ETHH--------MI---NKDVMTALGKEGVIINVGRGALIDEKELVH 247 (286)
Q Consensus 204 ~~~lp~~~---~t~~--------~i---~~~~l~~mk~g~ilvn~srg~~vd~~al~~ 247 (286)
+++.-... .++. ++ .....+.-++.+++|.++ .++|.-..+-
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~ 138 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA 138 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence 99854311 1111 11 111122223588899986 5565555443
No 338
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.71 E-value=0.068 Score=49.21 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCCEEEEEcC---ChHHHHHHHHhccCCC-EEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCC-----h
Q 043239 146 LGGKRVGIVGL---GSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALT-----E 211 (286)
Q Consensus 146 l~g~~vgIiG~---G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~-----~ 211 (286)
+.|.+|+++|= +++..+++..+..+|+ +|.+..+..-... .+....+++++++++|+|...-=.. +
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~ 234 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNS 234 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEECccccccccch
Confidence 67899999997 6999999999999999 8988876542211 1234578999999999997621100 0
Q ss_pred h----h--hhcccHHHHhcCCCCcEEEEcC
Q 043239 212 E----T--HHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 212 ~----t--~~~i~~~~l~~mk~g~ilvn~s 235 (286)
. . ...++++.++.+|++++|.-+.
T Consensus 235 ~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL 264 (310)
T PRK13814 235 VDIDAFRGSFRLTPEKLYSAKPDAIVMHPG 264 (310)
T ss_pred hHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence 1 1 2456788888899999998885
No 339
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.70 E-value=0.016 Score=54.72 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.4
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999998 68888875
No 340
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.68 E-value=0.027 Score=53.61 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|.+.+|.|+|+|.+|..+|+.|...|. ++.++|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 45889999999999999999999999888 68888753
No 341
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.67 E-value=0.044 Score=50.90 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCC--hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec
Q 043239 146 LGGKRVGIVGLG--SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 146 l~g~~vgIiG~G--~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l 207 (286)
+.|++|+++|-+ ++..+++..+..+|++|.+..+..-... + +....+++++++++|+|..-.
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999987 7999999999999999988876543211 1 123478999999999998742
Q ss_pred cC----C---hh-----hhhcccHHHHh-cCCCCcEEEEcC
Q 043239 208 AL----T---EE-----THHMINKDVMT-ALGKEGVIINVG 235 (286)
Q Consensus 208 p~----~---~~-----t~~~i~~~~l~-~mk~g~ilvn~s 235 (286)
=. . ++ ....++++.++ .+|++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 10 0 01 23446778888 479999988774
No 342
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.67 E-value=0.034 Score=41.94 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=45.2
Q ss_pred CCEEEEEcCChHHHHHHHHhc-cCCCEE-EEECCCCCCCC----CcccccCHHHhhcC--CCEEEEeccCChhhhhcc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLV-PFGCSI-AYTSRKKKPGV----SYPFYANVSGLAAD--SDVLIVCCALTEETHHMI 217 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~-~~g~~V-~~~~r~~~~~~----~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i 217 (286)
..++.|+|+|+.|++++.... ..|+++ .++|.+++... +...+.+++++.+. .|+-++++|. +.....+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~ 79 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVA 79 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHH
Confidence 358999999999999885443 456653 46666655432 33345577777665 9999999984 3334343
No 343
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.64 E-value=0.055 Score=50.57 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=68.2
Q ss_pred CEEEEEcCChHHHHHHHHhccC--CCEEE-EECCCCCCCC------CcccccCHHHhhcCCCEEEEeccCC-h-hhhhcc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF--GCSIA-YTSRKKKPGV------SYPFYANVSGLAADSDVLIVCCALT-E-ETHHMI 217 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~--g~~V~-~~~r~~~~~~------~~~~~~~l~e~l~~aDiV~~~lp~~-~-~t~~~i 217 (286)
.+|||||. .+|+..++.++.. +++++ ++|++.++.. +...+.++++++++.|++++++|.+ + ....-+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 58999999 6899999988765 46765 5788766532 3445789999999999999998742 1 222212
Q ss_pred cHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHhCCeeEE
Q 043239 218 NKDVMTALGKEG-VIINVGRGALIDEKELVHFLVRGSLVEL 257 (286)
Q Consensus 218 ~~~~l~~mk~g~-ilvn~srg~~vd~~al~~al~~~~i~ga 257 (286)
....|+.|. +++-=-= ..-+.++|+++.++.++...
T Consensus 83 ---a~~aL~aGkHVL~EKPl-a~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 ---ARALLARGIHVLQEHPL-HPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred ---HHHHHhCCCeEEEcCCC-CHHHHHHHHHHHHHcCCEEE
Confidence 233344543 3333211 24677778888888766644
No 344
>PLN02342 ornithine carbamoyltransferase
Probab=95.64 E-value=0.12 Score=48.28 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-------------CcccccCHHHhhcCCCEEEEec----
Q 043239 146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------SYPFYANVSGLAADSDVLIVCC---- 207 (286)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~~~~~~~l~e~l~~aDiV~~~l---- 207 (286)
+.|.+|+++|- .++..+++..+..+|++|.+..+..-... .+....+++++++++|+|.+-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence 78899999996 46888888889999999988876543211 1224578999999999998752
Q ss_pred cCChh--------hhhcccHHHHhcCCCCcEEEEcC
Q 043239 208 ALTEE--------THHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 208 p~~~~--------t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
-..+. ....++++.++.+|++++|.-+.
T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11111 12557888999999999998885
No 345
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.62 E-value=0.05 Score=47.04 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=33.7
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
++.|+++.|.|. |.+|..+++.|...|++|++.+|+.+
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999986 77999999999999999999998765
No 346
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.61 E-value=0.017 Score=50.62 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCCcccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------Ccc---cccCHHHhhcCCCEEEEeccC
Q 043239 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYP---FYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 140 ~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~---~~~~l~e~l~~aDiV~~~lp~ 209 (286)
++..-+++|++|.|||.|.++..=++.|..+|.+|+++++...+.. ... ...+. +.+..+++|+.++.+
T Consensus 17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATdD 95 (223)
T PRK05562 17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATDD 95 (223)
T ss_pred eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCCC
Confidence 3445678899999999999999999999999999999988654321 110 01122 345788888888653
No 347
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.016 Score=56.66 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccccc--cCHHHhhcCCCEEEEeccCChhhhh---
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFY--ANVSGLAADSDVLIVCCALTEETHH--- 215 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~--~~l~e~l~~aDiV~~~lp~~~~t~~--- 215 (286)
+.|+++.|+|+|..|.+.++.|+..|++|+++|+...... +.... ....+.++++|+|+.+-. -+....
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG-i~~~~p~~~ 88 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG-FRPTAPVLA 88 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC-CCCCCHHHH
Confidence 4688999999999999999999999999999996543211 22111 123355678998887632 222111
Q ss_pred --------cccHHHH--hcCC------C-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 216 --------MINKDVM--TALG------K-EGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 216 --------~i~~~~l--~~mk------~-g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
++.+-.+ ..++ + ..+=|-=+.|......-+...|+...
T Consensus 89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g 143 (488)
T PRK03369 89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG 143 (488)
T ss_pred HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 2222222 1111 2 23334446888888888888887643
No 348
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.58 E-value=0.057 Score=45.82 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=48.8
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCC---c-------ccccCHHHhhcCCCEEEEeccCC
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---Y-------PFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---~-------~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
++|+||| -|.+|+.+++-+...|++|+..-|++.+... . ....++.+.+..-|+|+.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 5899999 5999999999999999999999888876531 1 11244557889999999886543
No 349
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.54 E-value=0.16 Score=40.93 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=28.5
Q ss_pred EEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK 181 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~ 181 (286)
+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 788888653
No 350
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.51 E-value=0.027 Score=54.13 Aligned_cols=87 Identities=26% Similarity=0.237 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-------Cccc-------ccCHHH-hhcCCCEEEEeccCC
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------SYPF-------YANVSG-LAADSDVLIVCCALT 210 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------~~~~-------~~~l~e-~l~~aDiV~~~lp~~ 210 (286)
...+++.|+|+|.+|+.+++.|...|.+|++.+++++... +... ...|++ -+.++|.|+++.+..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 4578899999999999999999999999999988765311 1110 112222 357899998888755
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEc
Q 043239 211 EETHHMINKDVMTALGKEGVIINV 234 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~ 234 (286)
..+ ++.......+.+..+++-+
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEEE
Confidence 332 2223333445555555533
No 351
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.49 E-value=0.037 Score=50.00 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCCCcc--cccCHH-Hh-hcCCCEEEEeccCChhh-----hhcc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYP--FYANVS-GL-AADSDVLIVCCALTEET-----HHMI 217 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~l~-e~-l~~aDiV~~~lp~~~~t-----~~~i 217 (286)
++++.|+|.|..+++++..|...|+ +|++++|+.++..... ...+.. ++ ...+|+||.+.|..-.. ...+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi 201 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAF 201 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCC
Confidence 4689999999999999999999998 6999999876543110 001111 11 24689999999854211 0113
Q ss_pred cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 218 NKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 218 ~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
+. ..++++.+++|+--.. .++.=|..|-+.|
T Consensus 202 ~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G 232 (272)
T PRK12550 202 PE---AEIDAASVVFDVVALP-AETPLIRYARARG 232 (272)
T ss_pred CH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence 32 3467888999997654 3444444444433
No 352
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.49 E-value=0.051 Score=49.76 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCEEEEEcCChHHHHHHHHhcc-CCCEEE-EECCCCCCC-------CCccc-ccCHHHhhc-----CCCEEEEeccCChh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVP-FGCSIA-YTSRKKKPG-------VSYPF-YANVSGLAA-----DSDVLIVCCALTEE 212 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~-------~~~~~-~~~l~e~l~-----~aDiV~~~lp~~~~ 212 (286)
..++||||.|+||+..+..+.. -++++. +++++++.. .+... +.+.+++++ +.|+|+.+.|....
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4689999999999997776664 356765 566655421 13332 467888884 58889999874321
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q 043239 213 THHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
. +......+.|..+||-+
T Consensus 84 ~-----e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 V-----RHAAKLREAGIRAIDLT 101 (302)
T ss_pred H-----HHHHHHHHcCCeEEECC
Confidence 1 12223356788888876
No 353
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.49 E-value=0.17 Score=46.26 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=73.7
Q ss_pred CCEEEEEcC-ChHHHHHHHHhccCCCE-EEEECCC--CCCCCCcccccCHHHhhcC--CCEEEEeccCChhhhhcccHHH
Q 043239 148 GKRVGIVGL-GSIGSEVAKRLVPFGCS-IAYTSRK--KKPGVSYPFYANVSGLAAD--SDVLIVCCALTEETHHMINKDV 221 (286)
Q Consensus 148 g~~vgIiG~-G~iG~~~A~~l~~~g~~-V~~~~r~--~~~~~~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~~~ 221 (286)
..+|.|.|. |.+|..+.+.|..+|++ ++.+++. .....+...+.++.++-.. .|+.++++|. +.+...+. +.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~-e~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAIL-EA 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHH-HH
Confidence 457888896 88999999999998885 4456776 4455577778899998886 8999999993 34444442 22
Q ss_pred HhcCC-CCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEee
Q 043239 222 MTALG-KEGVIINVGRGALIDEKELVHFLVRGSLVELVLM 260 (286)
Q Consensus 222 l~~mk-~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lD 260 (286)
.. .. +.++++..+. ..-+++.|.+..+++.++-.+=.
T Consensus 86 ~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlGPN 123 (291)
T PRK05678 86 ID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIGPN 123 (291)
T ss_pred HH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEECCC
Confidence 22 22 2334443333 33444589999998887755433
No 354
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.48 E-value=0.042 Score=44.98 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC---cccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~---~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
..|++|++||+= +++++.|+..+.++.++++++..... .......++++++||+|++.-. .-..+-+ .+.+
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~iL 82 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DDIL 82 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HHHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HHHH
Confidence 468999999972 23788888888999999998854322 1134567789999999987621 1111222 3567
Q ss_pred hcCCCCcEEEEcCCC
Q 043239 223 TALGKEGVIINVGRG 237 (286)
Q Consensus 223 ~~mk~g~ilvn~srg 237 (286)
++.+++..++=.|-.
T Consensus 83 ~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 83 ELARNAREVILYGPS 97 (147)
T ss_dssp HHTTTSSEEEEESCC
T ss_pred HhCccCCeEEEEecC
Confidence 777777766666543
No 355
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.46 E-value=0.089 Score=50.90 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=66.9
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEe--ccCC-h----h
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVC--CALT-E----E 212 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~--lp~~-~----~ 212 (286)
++.|++|.|+|+|..|.++|+.|...|++|.++|....... +......-.+-+.++|+|+.. +|.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 36789999999999999999999999999999996543211 221111011235679988764 2211 1 1
Q ss_pred h---hh----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 213 T---HH----MINK-DVMTA-L-----GKEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 213 t---~~----~i~~-~~l~~-m-----k~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
. +. ++.+ +.+.. + +...+-|-=+.|......-+...|+...
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g 140 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG 140 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 11 1222 22222 2 2234455557899888888888888643
No 356
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.45 E-value=0.023 Score=51.98 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=45.4
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cc-------ccccCHHHhhcCCCEEEEecc
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SY-------PFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~-------~~~~~l~e~l~~aDiV~~~lp 208 (286)
++|.|.| .|.+|+.+++.|...|++|.+.+|+.++.. +. ....++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4789999 699999999999999999999888754321 11 122456778999999887644
No 357
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.033 Score=54.55 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc--cCHHHhhcCCCEEEEe--ccCC--
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY--ANVSGLAADSDVLIVC--CALT-- 210 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~--~~l~e~l~~aDiV~~~--lp~~-- 210 (286)
+.+++|.|+|+|..|.++|+.|+..|++|.++|....... +.... ....+.+.++|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999996543211 11110 1123456689999886 4432
Q ss_pred ---hh-------hhhcccH-HHH-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHhCCee
Q 043239 211 ---EE-------THHMINK-DVM-TAL--------GKEGVIINVGRGALIDEKELVHFLVRGSLV 255 (286)
Q Consensus 211 ---~~-------t~~~i~~-~~l-~~m--------k~g~ilvn~srg~~vd~~al~~al~~~~i~ 255 (286)
+. ...++.+ +.+ ..+ ++..+-|-=+.|......-+...|+.....
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 11 1122222 121 112 122344444688888888888888775544
No 358
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.44 E-value=0.11 Score=47.90 Aligned_cols=59 Identities=27% Similarity=0.348 Sum_probs=43.0
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCC--CCCC-------------C--ccc--ccCHHHhhcCCCEEEEe
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKK--KPGV-------------S--YPF--YANVSGLAADSDVLIVC 206 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~--~~~~-------------~--~~~--~~~l~e~l~~aDiV~~~ 206 (286)
++|+|+|. |.+|..++..|...|. +|..+|+.. +... + ... ..+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999997 9999999999998876 588888844 2221 0 001 1243 458999999999
Q ss_pred cc
Q 043239 207 CA 208 (286)
Q Consensus 207 lp 208 (286)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 75
No 359
>PRK07877 hypothetical protein; Provisional
Probab=95.43 E-value=0.045 Score=55.88 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCC------C----C-------------------Cc--c--
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKP------G----V-------------------SY--P-- 188 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~------~----~-------------------~~--~-- 188 (286)
..|++++|+|+|+| +|+.+|..|...|. ++..+|...-. . . .. .
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 45899999999999 89999999998884 67776642210 0 0 00 0
Q ss_pred ----cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhc
Q 043239 189 ----FYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224 (286)
Q Consensus 189 ----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~ 224 (286)
...+++++++++|+|+-|+ ++-+++.++++.-..+
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~-D~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEEC-DSLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 1246778899999998877 4667888887666554
No 360
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.42 E-value=0.055 Score=49.48 Aligned_cols=29 Identities=28% Similarity=0.690 Sum_probs=25.9
Q ss_pred EEEEEcCChHHHHHHHHhccCCC-EEEEEC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTS 178 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~ 178 (286)
+|.|+|.|.+|..+|+.|...|. +++.+|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 58999999999999999999998 677766
No 361
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.37 E-value=0.047 Score=51.06 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=51.2
Q ss_pred CCCEEEEEc-CChHHHHHHHHhccCCC---EEEEE-C-CCCCCCCCc--c--cccCH-HHhhcCCCEEEEeccCChhhhh
Q 043239 147 GGKRVGIVG-LGSIGSEVAKRLVPFGC---SIAYT-S-RKKKPGVSY--P--FYANV-SGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~---~V~~~-~-r~~~~~~~~--~--~~~~l-~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
...+|+|+| .|.+|+.+.+.|...++ ++.+. + |+..+.... . ...++ .+.+.++|+|++++|.. .+..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 356899999 69999999999998665 34333 2 232222111 0 11222 24558899999999854 2232
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 043239 216 MINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~s 235 (286)
+.. + ..+.|+.+||.|
T Consensus 85 ~~~-~---~~~~g~~VIDlS 100 (344)
T PLN02383 85 FGP-I---AVDKGAVVVDNS 100 (344)
T ss_pred HHH-H---HHhCCCEEEECC
Confidence 221 1 125688999998
No 362
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=95.36 E-value=0.13 Score=41.47 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=65.8
Q ss_pred HHHHHhccCCCEEEEECCCCCCC---------CCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEE
Q 043239 162 EVAKRLVPFGCSIAYTSRKKKPG---------VSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVII 232 (286)
Q Consensus 162 ~~A~~l~~~g~~V~~~~r~~~~~---------~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilv 232 (286)
..+++|.+.|++|++=.-..... .++....+.++++++||+|+-.-|.+ .+.+++|++|.+++
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 67788888899998754332221 13444556678999999997654432 45678899999999
Q ss_pred EcCCCcccCHHHHHHHHHhCCeeEEEeeccCC
Q 043239 233 NVGRGALIDEKELVHFLVRGSLVELVLMCLRT 264 (286)
Q Consensus 233 n~srg~~vd~~al~~al~~~~i~ga~lDv~~~ 264 (286)
-..... ....+++.|.++++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 775444 699999999999999888888766
No 363
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.35 E-value=0.018 Score=58.00 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=55.8
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc----ccC---HHH-hhcCCCEEEEeccCChhhh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF----YAN---VSG-LAADSDVLIVCCALTEETH 214 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~----~~~---l~e-~l~~aDiV~~~lp~~~~t~ 214 (286)
..++-|+|+|++|+.+++.|.+.|.++++.|.+++..+ +... ..+ +++ =++++|.+++++++.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46899999999999999999999999999988776432 2111 122 222 2568999999987665554
Q ss_pred hcccHHHHhcCCCCcEEE
Q 043239 215 HMINKDVMTALGKEGVII 232 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilv 232 (286)
.++ .....+.|...++
T Consensus 480 ~i~--~~ar~~~p~~~ii 495 (621)
T PRK03562 480 QLV--ELVKEHFPHLQII 495 (621)
T ss_pred HHH--HHHHHhCCCCeEE
Confidence 443 2333344554443
No 364
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.35 E-value=0.38 Score=44.32 Aligned_cols=61 Identities=10% Similarity=0.192 Sum_probs=48.4
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC------------C-cccccCHHHhhcCCCEEEE
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------S-YPFYANVSGLAADSDVLIV 205 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~-~~~~~~l~e~l~~aDiV~~ 205 (286)
.+.|++|+++|- +++..+++..+..+|++|.+..+..-... + +....+++++++++|+|.+
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~ 224 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYT 224 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEe
Confidence 378999999997 79999999999999999998887542100 1 1225789999999999987
No 365
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.35 E-value=0.049 Score=50.68 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=52.0
Q ss_pred CCEEEEEc-CChHHHHHHHHhccCCC---EEEEECCCCCC--CCCc----ccccCHH-HhhcCCCEEEEeccCChhhhhc
Q 043239 148 GKRVGIVG-LGSIGSEVAKRLVPFGC---SIAYTSRKKKP--GVSY----PFYANVS-GLAADSDVLIVCCALTEETHHM 216 (286)
Q Consensus 148 g~~vgIiG-~G~iG~~~A~~l~~~g~---~V~~~~r~~~~--~~~~----~~~~~l~-e~l~~aDiV~~~lp~~~~t~~~ 216 (286)
+++|+|+| .|.+|+.+.+.|...|+ ++.+..+.... .... ....+++ +.++++|+|+.|+|.. .+..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 46899999 69999999999998766 34555433222 1111 1122222 3457899999999843 23322
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 043239 217 INKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 217 i~~~~l~~mk~g~ilvn~sr 236 (286)
. .. .++.|+.+||.|.
T Consensus 80 ~-~~---~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-PK---AAAAGAVVIDNSS 95 (334)
T ss_pred H-HH---HHhCCCEEEECCc
Confidence 2 11 2357889999874
No 366
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.31 E-value=0.11 Score=48.43 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=82.3
Q ss_pred HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHH
Q 043239 88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAK 165 (286)
Q Consensus 88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~ 165 (286)
.+....|+|.|..+...-++ .+|+=++.+.+++ .| .+.|++|+++|-+ ++..+++.
T Consensus 117 ~a~~s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~-------------------~g-~l~g~kia~vGD~~~~v~~Sl~~ 174 (332)
T PRK04284 117 LAEYSGVPVWNGLTDEDHPT--QVLADFLTAKEHL-------------------KK-PYKDIKFTYVGDGRNNVANALMQ 174 (332)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-------------------cC-CcCCcEEEEecCCCcchHHHHHH
Confidence 34556899999765433332 2333333333221 01 3778999999975 88999999
Q ss_pred HhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEec----cCCh----h-----hhhc
Q 043239 166 RLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCC----ALTE----E-----THHM 216 (286)
Q Consensus 166 ~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~l----p~~~----~-----t~~~ 216 (286)
.+..+|++|.+..+..-... + +....+++++++++|+|.+-. .... + ....
T Consensus 175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~ 254 (332)
T PRK04284 175 GAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQ 254 (332)
T ss_pred HHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCc
Confidence 99999999988876532111 1 224578999999999998741 1000 0 2344
Q ss_pred ccHHHHhcCC-CCcEEEEcC
Q 043239 217 INKDVMTALG-KEGVIINVG 235 (286)
Q Consensus 217 i~~~~l~~mk-~g~ilvn~s 235 (286)
++++.++.++ ++++|.-+.
T Consensus 255 v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 255 VNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CCHHHHhhcCCCCcEEECCC
Confidence 6788888886 588888875
No 367
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.30 E-value=0.1 Score=50.26 Aligned_cols=103 Identities=19% Similarity=0.285 Sum_probs=62.0
Q ss_pred CEEEEEcCChHHHHHHHHhccC----------CCEEE-EECCCCCCCC-----CcccccCHHHhhc--CCCEEEEeccCC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPF----------GCSIA-YTSRKKKPGV-----SYPFYANVSGLAA--DSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~----------g~~V~-~~~r~~~~~~-----~~~~~~~l~e~l~--~aDiV~~~lp~~ 210 (286)
.+|||+|+|.||+.+++.|... +.+|. +++++..+.. ......++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4899999999999999887542 34544 5676654432 1234568889985 469999887643
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCee
Q 043239 211 EETHHMINKDVMTALGKEGVIINVGRGAL-IDEKELVHFLVRGSLV 255 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~srg~~-vd~~al~~al~~~~i~ 255 (286)
.....+ ....|+.|.-+|-..-+-. ...+.|.++.++.+..
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 222211 2244556655553322222 2346777777766553
No 368
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.28 E-value=0.17 Score=44.05 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=68.8
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc-----ccCHHHh-----hcCCCEEEEeccCCh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF-----YANVSGL-----AADSDVLIVCCALTE 211 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~-----~~~l~e~-----l~~aDiV~~~lp~~~ 211 (286)
.|.+|.|.|.|.+|+.+++.++..|.+|.+.+++.+... +... ..+..+. -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 578999999999999999999999999998887653211 1100 0111111 245899988775321
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEEeecc
Q 043239 212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELVLMCL 262 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~lDv~ 262 (286)
.-...+..|+++..+++++..............-.+.+.-.+.+.+
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGG 259 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecC
Confidence 1245677888999999987665433322222233344444444444
No 369
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.26 E-value=0.1 Score=51.80 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=46.8
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--------------C------cc-------cccCHHHhh
Q 043239 146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S------YP-------FYANVSGLA 197 (286)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~------~~-------~~~~l~e~l 197 (286)
-.|+++.|.|. |.||+.+++.|...|++|.+..|+.+... + .. ...++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 35789999985 99999999999999999998888654310 0 00 112445568
Q ss_pred cCCCEEEEeccC
Q 043239 198 ADSDVLIVCCAL 209 (286)
Q Consensus 198 ~~aDiV~~~lp~ 209 (286)
.++|+|+.++..
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 899999888643
No 370
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.23 E-value=0.02 Score=48.52 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=44.6
Q ss_pred EEEEEcCChHHHHHHHH--hccCCCEEE-EECCCCCCCC----C--cccccCHHHhhc--CCCEEEEeccCCh
Q 043239 150 RVGIVGLGSIGSEVAKR--LVPFGCSIA-YTSRKKKPGV----S--YPFYANVSGLAA--DSDVLIVCCALTE 211 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~--l~~~g~~V~-~~~r~~~~~~----~--~~~~~~l~e~l~--~aDiV~~~lp~~~ 211 (286)
++.|||.|++|++++.. ....|+++. +||..++..- + ....+++++.++ +.|+.++|+|...
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 59999999999999985 336788865 7887765321 1 223456777776 6788999999543
No 371
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.20 E-value=0.2 Score=45.60 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=73.3
Q ss_pred CCCEEEEEc-CChHHHHHHHHhccCCCE-EEEECCC--CCCCCCcccccCHHHhhcC--CCEEEEeccCChhhhhcccHH
Q 043239 147 GGKRVGIVG-LGSIGSEVAKRLVPFGCS-IAYTSRK--KKPGVSYPFYANVSGLAAD--SDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~-V~~~~r~--~~~~~~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~~ 220 (286)
.+.+|.|.| .|.+|..+-+.+.+.|.+ |..+++. .....+...+.+++|+-+. .|+.++++|. +.+...+. +
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~-e 82 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIF-E 82 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHH-H
Confidence 355788888 699999999999998886 3456666 4444567778899998876 6999999993 34444443 2
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCeeEEE
Q 043239 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSLVELV 258 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~vd~~al~~al~~~~i~ga~ 258 (286)
....=-+.++++.-+-++ -+++.|.+..++..++-.+
T Consensus 83 ~~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 83 AIDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred HHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEEC
Confidence 222111234444444444 3678899999888776543
No 372
>PRK04148 hypothetical protein; Provisional
Probab=95.16 E-value=0.026 Score=45.47 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=46.0
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-----cccCHHHhhcCCCEEEEeccC
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-----FYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-----~~~~l~e~l~~aDiV~~~lp~ 209 (286)
+++++..||+| -|..+|+.|...|++|++.|.++.... ... .+..--++.+.+|+|..+-|.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 46799999999 899999999999999999998876422 111 122223567788888777663
No 373
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.093 Score=45.72 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=32.5
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKK 181 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~ 181 (286)
++.++++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 9999999999999999998887754
No 374
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=95.10 E-value=0.13 Score=47.99 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=63.4
Q ss_pred cCCCCEEEEEcC---ChHHHHHHHHhcc-CCCEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEEEEecc
Q 043239 145 TLGGKRVGIVGL---GSIGSEVAKRLVP-FGCSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~A~~l~~-~g~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV~~~lp 208 (286)
.+.|.+|+++|- +++..+++..+.. +|++|.+..+..-... + +....+++++++++|+|.+-.-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRI 235 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEcCc
Confidence 578999999998 5889998887664 4899988876543211 1 2235789999999999987321
Q ss_pred CC------hh-----hhhcccHHHH-hcCCCCcEEEEcC
Q 043239 209 LT------EE-----THHMINKDVM-TALGKEGVIINVG 235 (286)
Q Consensus 209 ~~------~~-----t~~~i~~~~l-~~mk~g~ilvn~s 235 (286)
-. +. ....++++.+ ..+|++++|.-+.
T Consensus 236 q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcL 274 (338)
T PRK08192 236 QEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPL 274 (338)
T ss_pred ccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCC
Confidence 10 11 1244567777 4589999988774
No 375
>PRK13529 malate dehydrogenase; Provisional
Probab=95.04 E-value=0.33 Score=48.00 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=93.1
Q ss_pred CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhcc---
Q 043239 93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP--- 169 (286)
Q Consensus 93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~--- 169 (286)
.|.+.|.-= .-+|--+++.+|+.+|- .|+.|...+|.|+|.|..|..+|+.+..
T Consensus 263 ~i~~FnDDi---QGTaaV~LAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~ 319 (563)
T PRK13529 263 EICTFNDDI---QGTGAVTLAGLLAALKI--------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAMV 319 (563)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHH
Confidence 455555321 34666777777777664 3557889999999999999999999886
Q ss_pred -CCC-------EEEEECCCCC----C--CCC-----cc------------cccCHHHhhcCC--CEEEEeccCChhhhhc
Q 043239 170 -FGC-------SIAYTSRKKK----P--GVS-----YP------------FYANVSGLAADS--DVLIVCCALTEETHHM 216 (286)
Q Consensus 170 -~g~-------~V~~~~r~~~----~--~~~-----~~------------~~~~l~e~l~~a--DiV~~~lp~~~~t~~~ 216 (286)
.|. +++.+|+..- . ... .+ ...+|.|+++.+ |+++-+- ...+.
T Consensus 320 ~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S----~~~g~ 395 (563)
T PRK13529 320 REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS----GQPGA 395 (563)
T ss_pred HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEec----CCCCC
Confidence 576 6888886531 1 000 00 114789999988 9887542 12478
Q ss_pred ccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--hC-CeeEEEe
Q 043239 217 INKDVMTALGK---EGVIINVGRGALIDEKELVHFLV--RG-SLVELVL 259 (286)
Q Consensus 217 i~~~~l~~mk~---g~ilvn~srg~~vd~~al~~al~--~~-~i~ga~l 259 (286)
++++.+..|.+ .++|.=.|+....-|-.-.++.+ +| -|.+.+.
T Consensus 396 Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs 444 (563)
T PRK13529 396 FTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS 444 (563)
T ss_pred CCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC
Confidence 99999999976 78999999887643333333333 34 4544444
No 376
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.02 E-value=0.06 Score=53.81 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-C----c--ccccC---HHHhhcCCCEEEEecc
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-S----Y--PFYAN---VSGLAADSDVLIVCCA 208 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~----~--~~~~~---l~e~l~~aDiV~~~lp 208 (286)
.+...++|||||-|..|+.+++.++.+|++|.+++.++.... . . ..+.+ +.++++++|+|.....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 347889999999999999999999999999999988664221 0 0 11233 5566788999876544
No 377
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.01 E-value=0.055 Score=54.18 Aligned_cols=35 Identities=26% Similarity=0.567 Sum_probs=31.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEEC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTS 178 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~ 178 (286)
..|++.+|.|+|+|.+|..+|+.|.+.|. +++.+|
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD 369 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVD 369 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEc
Confidence 56899999999999999999999999998 677766
No 378
>PRK05442 malate dehydrogenase; Provisional
Probab=94.98 E-value=0.23 Score=46.09 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=58.4
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC---------------cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS---------------YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~---------------~~~~~~l~e~l~~aDiV 203 (286)
++|+|||. |.+|..+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998875443 68888874432 110 01123455788999999
Q ss_pred EEeccCC--h-hhhhc-c--c----HHH----HhcCCCCcEEEEcCCCcccCHHHHHH
Q 043239 204 IVCCALT--E-ETHHM-I--N----KDV----MTALGKEGVIINVGRGALIDEKELVH 247 (286)
Q Consensus 204 ~~~lp~~--~-~t~~~-i--~----~~~----l~~mk~g~ilvn~srg~~vd~~al~~ 247 (286)
+++.-.. + +++.- + | ++. -+..++.++++.++ .++|.-..+-
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~ 140 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA 140 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence 9875421 1 11111 1 1 112 22234688999997 5565554443
No 379
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.98 E-value=0.075 Score=50.12 Aligned_cols=84 Identities=17% Similarity=0.267 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCC----------hHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCHHHhhcCCCEEEEeccCC
Q 043239 146 LGGKRVGIVGLG----------SIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 146 l~g~~vgIiG~G----------~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
|.|++|||+|+- .-...++++|+..|.+|.+||+...... ......++.+++++||+++++.. .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 889999999975 3677899999999999999998665432 23456899999999999988753 3
Q ss_pred hhhhhcccHHHHhcCCCCcEEEE
Q 043239 211 EETHHMINKDVMTALGKEGVIIN 233 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn 233 (286)
++-+.+- -+.+ .|| +.+++|
T Consensus 387 ~ef~~~d-~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDLD-FEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhccC-hhhh-hcc-CCEEEe
Confidence 3444332 2223 454 455665
No 380
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.98 E-value=0.12 Score=47.54 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=51.1
Q ss_pred EEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHHhcCCC
Q 043239 150 RVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK 227 (286)
Q Consensus 150 ~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~ 227 (286)
+|+|+| -|-.|.++.++|...-. ++.....+.. .. ..+.+++++++|++++|+|.. .+..+. ... .+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~-~~~---~~~ 72 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD-AAERAKLLNAADVAILCLPDD-AAREAV-SLV---DNP 72 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH-HHH---HhC
Confidence 799998 69999999999998643 5554432211 11 234567778999999999954 333332 112 256
Q ss_pred CcEEEEcC
Q 043239 228 EGVIINVG 235 (286)
Q Consensus 228 g~ilvn~s 235 (286)
|+.+||.|
T Consensus 73 g~~VIDlS 80 (310)
T TIGR01851 73 NTCIIDAS 80 (310)
T ss_pred CCEEEECC
Confidence 88999998
No 381
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.97 E-value=0.044 Score=50.43 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=42.6
Q ss_pred EEEEEcCChHHHHHHHHhccCCC--EEEEECCCCCCCC----------Cc------ccccCHHHhhcCCCEEEEecc
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGV----------SY------PFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~----------~~------~~~~~l~e~l~~aDiV~~~lp 208 (286)
+|+|||.|.+|..+|..|...+. ++..+|...+... .+ ....+-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998876665 7889998665432 00 011122467899999999754
No 382
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.036 Score=53.95 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=68.1
Q ss_pred cCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC------Cccccc--CHHHhhcCCCEEEEe--ccCC-hhh
Q 043239 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV------SYPFYA--NVSGLAADSDVLIVC--CALT-EET 213 (286)
Q Consensus 145 ~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------~~~~~~--~l~e~l~~aDiV~~~--lp~~-~~t 213 (286)
.+.+++|.|+|+|..|.++|+.|...|++|.++|++..... +..... ...+.+.++|+|+.. +|.+ +..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 46788999999999999999999999999999997543211 221111 123445688988776 2322 211
Q ss_pred -------hhcccHHHHh-c------C-CCC-cEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 214 -------HHMINKDVMT-A------L-GKE-GVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 214 -------~~~i~~~~l~-~------m-k~g-~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
..++.+-.+. . + .+. .+-|-=+.|......-+...|+....
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~ 148 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGF 148 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence 1122222221 1 1 122 33444468888888888888887543
No 383
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.053 Score=52.75 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC-C-------Cccc--ccCHHHhhcCCCEEEEe--ccCC-hh
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG-V-------SYPF--YANVSGLAADSDVLIVC--CALT-EE 212 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-~-------~~~~--~~~l~e~l~~aDiV~~~--lp~~-~~ 212 (286)
+.|++|+|+|+|.-|.+.|+.|...|++|+++|...... . .... .....+.+.++|+|+.. +|.+ +.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 468899999999999999999999999999999543221 1 0000 11113456789998776 2322 11
Q ss_pred h-------hhcccHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 213 T-------HHMINKDV--MTA-LG-----KEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 213 t-------~~~i~~~~--l~~-mk-----~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
. ..++.+-. +.. ++ ...+-|-=+.|......-+...|+...
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 1 12344333 232 32 124445556888888888888887643
No 384
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.95 E-value=0.084 Score=48.89 Aligned_cols=95 Identities=18% Similarity=0.307 Sum_probs=58.1
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHhccCC--CEEEEECCCCCCC---C------Cccc--c---cCHHHhhcCCCEEEEecc
Q 043239 146 LGGKRVGIVGL-GSIGSEVAKRLVPFG--CSIAYTSRKKKPG---V------SYPF--Y---ANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~A~~l~~~g--~~V~~~~r~~~~~---~------~~~~--~---~~l~e~l~~aDiV~~~lp 208 (286)
++.++|+|+|. |.+|..+|..|...+ .++..+|+..... + .... . .+..+.+++||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56779999999 999999999998544 4788898832211 1 1111 1 122678999999998764
Q ss_pred CChh---h-hhccc------HHHHhcC---CCCcEEEEcCCCccc
Q 043239 209 LTEE---T-HHMIN------KDVMTAL---GKEGVIINVGRGALI 240 (286)
Q Consensus 209 ~~~~---t-~~~i~------~~~l~~m---k~g~ilvn~srg~~v 240 (286)
.... + ..++. ++..+.| .+..+++.++.+--+
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv 130 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNS 130 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence 3211 1 11111 2233333 556788888665433
No 385
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.93 E-value=0.26 Score=45.62 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=58.8
Q ss_pred EEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCC--CCCCC-------c--------ccccCHHHhhcCCCEEE
Q 043239 150 RVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKK--KPGVS-------Y--------PFYANVSGLAADSDVLI 204 (286)
Q Consensus 150 ~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~--~~~~~-------~--------~~~~~l~e~l~~aDiV~ 204 (286)
+|+|+|. |.+|..+|..|...|. ++..+|+.. +...+ . ....+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999886543 488888876 33221 0 01145668899999998
Q ss_pred EeccC--Ch-hhhhc-c--c----HH---HHhcC-CCCcEEEEcCCCcccCHHHHH
Q 043239 205 VCCAL--TE-ETHHM-I--N----KD---VMTAL-GKEGVIINVGRGALIDEKELV 246 (286)
Q Consensus 205 ~~lp~--~~-~t~~~-i--~----~~---~l~~m-k~g~ilvn~srg~~vd~~al~ 246 (286)
++.-. .+ +++.- + | ++ .+... +|.+++|.++ .++|.-+.+
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 87432 11 11111 0 1 12 22233 5788888885 556655444
No 386
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.91 E-value=0.36 Score=47.92 Aligned_cols=119 Identities=20% Similarity=0.202 Sum_probs=84.1
Q ss_pred CeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhcc---
Q 043239 93 GILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP--- 169 (286)
Q Consensus 93 gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~--- 169 (286)
.|.+.|.-= ..+|--+++.+|+.+|- .+++|...+|.|+|.|..|..+|+.+..
T Consensus 289 ~i~~FnDDi---QGTaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 289 THLCFNDDI---QGTAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred CCCEecccc---chHHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHHHH
Confidence 455554321 34666777777777664 3457899999999999999999999876
Q ss_pred --CCC-------EEEEECCCCC----C---CC--------CcccccCHHHhhcC--CCEEEEeccCChhhhhcccHHHHh
Q 043239 170 --FGC-------SIAYTSRKKK----P---GV--------SYPFYANVSGLAAD--SDVLIVCCALTEETHHMINKDVMT 223 (286)
Q Consensus 170 --~g~-------~V~~~~r~~~----~---~~--------~~~~~~~l~e~l~~--aDiV~~~lp~~~~t~~~i~~~~l~ 223 (286)
.|. +++.+|+..- . .. ......+|.|+++. .|+++-+- ...+.++++.+.
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~ 421 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVLE 421 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHH
Confidence 466 6777776431 1 11 01124589999998 89887642 124689999999
Q ss_pred cCC---CCcEEEEcCCCc
Q 043239 224 ALG---KEGVIINVGRGA 238 (286)
Q Consensus 224 ~mk---~g~ilvn~srg~ 238 (286)
.|. +.++|.=.|+..
T Consensus 422 ~Ma~~~~rPIIFaLSNPt 439 (581)
T PLN03129 422 AMASLNERPIIFALSNPT 439 (581)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 995 788999888775
No 387
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.91 E-value=0.16 Score=47.28 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=82.6
Q ss_pred HHhhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCC--hHHHHHHH
Q 043239 88 ECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLG--SIGSEVAK 165 (286)
Q Consensus 88 ~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G--~iG~~~A~ 165 (286)
.+...+|+|.|..+...-++ .+|+=++.+.++ | .+..+.|.+|+++|-+ ++..+++.
T Consensus 117 ~a~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------~-------g~~~l~gl~va~vGD~~~~v~~S~~~ 175 (334)
T PRK12562 117 LAEYAGVPVWNGLTNEFHPT--QLLADLLTMQEH------------L-------PGKAFNEMTLVYAGDARNNMGNSMLE 175 (334)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------h-------CCCCcCCcEEEEECCCCCCHHHHHHH
Confidence 34556899999865433332 233333332221 0 1124788999999975 79999999
Q ss_pred HhccCCCEEEEECCCCCCC-C-------------C--cccccCHHHhhcCCCEEEEec----cCCh----h-----hhhc
Q 043239 166 RLVPFGCSIAYTSRKKKPG-V-------------S--YPFYANVSGLAADSDVLIVCC----ALTE----E-----THHM 216 (286)
Q Consensus 166 ~l~~~g~~V~~~~r~~~~~-~-------------~--~~~~~~l~e~l~~aDiV~~~l----p~~~----~-----t~~~ 216 (286)
.+..+|++|.+..+..-.. . + +....+++++++++|+|.+-. .... + ...-
T Consensus 176 ~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~ 255 (334)
T PRK12562 176 AAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQ 255 (334)
T ss_pred HHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCc
Confidence 9999999998887654211 0 1 223578999999999998742 1100 0 1334
Q ss_pred ccHHHHhcC-CCCcEEEEcCC
Q 043239 217 INKDVMTAL-GKEGVIINVGR 236 (286)
Q Consensus 217 i~~~~l~~m-k~g~ilvn~sr 236 (286)
++++.++.. |++++|.-+.-
T Consensus 256 v~~ell~~a~~~~~i~mHcLP 276 (334)
T PRK12562 256 VNSKMMALTGNPQVKFLHCLP 276 (334)
T ss_pred CCHHHHHhhcCCCCEEECCCC
Confidence 677888885 78999988853
No 388
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.89 E-value=0.048 Score=52.84 Aligned_cols=108 Identities=18% Similarity=0.273 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCChHHHH-HHHHhccCCCEEEEECCCCCCCC------Ccccc-cCHHHhhcCCCEEEEe--ccCC-hhhh
Q 043239 146 LGGKRVGIVGLGSIGSE-VAKRLVPFGCSIAYTSRKKKPGV------SYPFY-ANVSGLAADSDVLIVC--CALT-EETH 214 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~-~A~~l~~~g~~V~~~~r~~~~~~------~~~~~-~~l~e~l~~aDiV~~~--lp~~-~~t~ 214 (286)
.++++|.|+|+|..|.+ +|+.|+..|++|.++|....... +.... ..-.+.+.++|+|+.. +|.+ +...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 79999999999999997653211 11111 1123445689988776 2322 2111
Q ss_pred -------hcccHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 215 -------HMINKD-VMTA-LGK-EGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 215 -------~~i~~~-~l~~-mk~-g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
.++.+- .+.. +++ ..+-|-=+.|......-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 234332 3333 332 24455556899888888888887654
No 389
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.85 E-value=0.15 Score=48.33 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=97.2
Q ss_pred ccEEEEcCCCCC--cCChhHH--------hhcCeEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCC
Q 043239 71 LEIVVGSTAGID--HVDLQEC--------RRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140 (286)
Q Consensus 71 Lk~i~~~~~G~d--~id~~~~--------~~~gI~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~ 140 (286)
+|.+.-...|++ .++...| .+..|+|.|.-- .-+|=-+++.+++.+|-
T Consensus 135 Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDq---qGTaiv~lA~llnalk~------------------- 192 (432)
T COG0281 135 VKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQ---QGTAIVTLAALLNALKL------------------- 192 (432)
T ss_pred HHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccc---cHHHHHHHHHHHHHHHH-------------------
Confidence 455566666665 3444444 233566666432 24666777788876665
Q ss_pred CCcccCCCCEEEEEcCChHHHHHHHHhccCCC---EEEEECCCCCCCC--------Cccc---------ccCHHHhhcCC
Q 043239 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGC---SIAYTSRKKKPGV--------SYPF---------YANVSGLAADS 200 (286)
Q Consensus 141 ~~~~~l~g~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~r~~~~~~--------~~~~---------~~~l~e~l~~a 200 (286)
.|++|+..+|.+.|.|.-|-.+++.+.+.|+ +|+.+|+..--.. .... ... ++.+..+
T Consensus 193 -~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~a 270 (432)
T COG0281 193 -TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGA 270 (432)
T ss_pred -hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCC
Confidence 4677999999999999999999999999998 5888887642111 0100 011 4478889
Q ss_pred CEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 043239 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL 239 (286)
Q Consensus 201 DiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~ 239 (286)
|+++-+ . ..+.+.++.++.|.+.+++.=+|...+
T Consensus 271 dv~iG~-S----~~G~~t~e~V~~Ma~~PiIfalaNP~p 304 (432)
T COG0281 271 DVLIGV-S----GVGAFTEEMVKEMAKHPIIFALANPTP 304 (432)
T ss_pred CEEEEc-C----CCCCcCHHHHHHhccCCEEeecCCCCc
Confidence 988665 2 238999999999999999998887764
No 390
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.81 E-value=0.051 Score=39.24 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=32.1
Q ss_pred EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG 184 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~ 184 (286)
++.|||.|.+|-.+|..|..+|.+|+++.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999998887665
No 391
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.80 E-value=0.15 Score=49.09 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=61.3
Q ss_pred cccCCCCEEEEEcC----------ChHHHHHHHHhccCCCEEEEECCCCCCCC--CcccccCHHH-hhcCCCEEEEeccC
Q 043239 143 GSTLGGKRVGIVGL----------GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SYPFYANVSG-LAADSDVLIVCCAL 209 (286)
Q Consensus 143 ~~~l~g~~vgIiG~----------G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~~~~~~l~e-~l~~aDiV~~~lp~ 209 (286)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+||+...... .......+++ .++.||.|+++..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~- 387 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVG- 387 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccC-
Confidence 34578999999998 46788999999999999999998633211 1001111222 4678999999875
Q ss_pred ChhhhhcccHH-HHhcCCCCcEEEEcCCCcc
Q 043239 210 TEETHHMINKD-VMTALGKEGVIINVGRGAL 239 (286)
Q Consensus 210 ~~~t~~~i~~~-~l~~mk~g~ilvn~srg~~ 239 (286)
.++-+. ++-+ ....|+...+++|. |+-+
T Consensus 388 h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 333333 3333 33456655688994 6554
No 392
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.053 Score=52.56 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=64.6
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCCc------ccc-cCHHHhhcCCCEEEEec--cCC-hhh---
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSY------PFY-ANVSGLAADSDVLIVCC--ALT-EET--- 213 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~------~~~-~~l~e~l~~aDiV~~~l--p~~-~~t--- 213 (286)
.|++|+|+|+|.-|.+.++.|+. |++|+++|......... ... ....+.+.++|+|+..- |.+ +..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999996 99999999543321100 000 11124567899887762 221 111
Q ss_pred ----hhcccHH-HH-hcCCCC-cEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 214 ----HHMINKD-VM-TALGKE-GVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 214 ----~~~i~~~-~l-~~mk~g-~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
..++.+- .+ ..+++. .+=|-=+.|......-+...|+..+
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 130 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG 130 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 1133322 22 333332 3334446888888888888888744
No 393
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.78 E-value=0.12 Score=47.77 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=59.5
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc-----ccCHHHhhc---CCCEEEEeccCChh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF-----YANVSGLAA---DSDVLIVCCALTEE 212 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~-----~~~l~e~l~---~aDiV~~~lp~~~~ 212 (286)
.|++|.|+|.|.+|...++.++..|. +|++.++++++.. ++.. -.++.+... ..|+|+-+... +.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-PS 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-HH
Confidence 58899999999999999999999998 5888887765422 2211 123334332 27999887652 11
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 043239 213 THHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
+ + ...++.++++..++.++.
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 356778899999999875
No 394
>PLN00106 malate dehydrogenase
Probab=94.77 E-value=0.091 Score=48.67 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCC---C------Ccc-----cccCHHHhhcCCCEEEEeccC
Q 043239 147 GGKRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPG---V------SYP-----FYANVSGLAADSDVLIVCCAL 209 (286)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~---~------~~~-----~~~~l~e~l~~aDiV~~~lp~ 209 (286)
...+|+|+|. |.+|..+|..|...+. ++..+|...... + ... ...++.+.+++||+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 3469999999 9999999999985554 788898765211 1 011 123457889999999887442
Q ss_pred Ch---hhhh-cc------cHHH---HhcCCCCcEEEEcCCCcc
Q 043239 210 TE---ETHH-MI------NKDV---MTALGKEGVIINVGRGAL 239 (286)
Q Consensus 210 ~~---~t~~-~i------~~~~---l~~mk~g~ilvn~srg~~ 239 (286)
.. .++. ++ -++. +....+.+++++++..--
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 11 1111 11 1122 222357889999976653
No 395
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.75 E-value=0.021 Score=49.66 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=46.3
Q ss_pred EEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC-------CCc-------ccccCHHHhhcCCCEEEEeccCC
Q 043239 151 VGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG-------VSY-------PFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 151 vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------~~~-------~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
|.|+|. |.+|+.+++.|.+.+++|.+..|+..+. .+. ...+++.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678985 9999999999999999999888876421 121 12356777899999999999843
No 396
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.73 E-value=0.06 Score=50.18 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=42.4
Q ss_pred EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCCC--c-----ccccC---HHHhhcCCCEEEE
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS--Y-----PFYAN---VSGLAADSDVLIV 205 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~--~-----~~~~~---l~e~l~~aDiV~~ 205 (286)
+|||||.|..|+.+++.++.+|++|.+++.++..... . ..+.+ +.++++.||+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 5899999999999999999999999999886543220 0 11233 6667888998754
No 397
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.70 E-value=0.19 Score=45.28 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=32.3
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
..|.+++|.|+|+|.+|..+|+.|...|. +++++|..
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45899999999999999999999999895 77777743
No 398
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.70 E-value=0.073 Score=47.69 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=45.0
Q ss_pred EEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--C-------cccccCHHHhh------cC-CCEEEEeccCC
Q 043239 150 RVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--S-------YPFYANVSGLA------AD-SDVLIVCCALT 210 (286)
Q Consensus 150 ~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~-------~~~~~~l~e~l------~~-aDiV~~~lp~~ 210 (286)
+|.|.|. |.+|+.+++.|...|++|.+..|++++.. + .....++.+++ .. +|.|+.+.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 3678876 99999999999999999999998875432 1 11234566666 45 89998887754
No 399
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.66 E-value=0.045 Score=50.33 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=47.5
Q ss_pred CCEEEEEcCChHH-HHHHHHhccCC--CE-EEEECCCCCCCC------Cc-ccccCHHHhhcC--CCEEEEeccCChh
Q 043239 148 GKRVGIVGLGSIG-SEVAKRLVPFG--CS-IAYTSRKKKPGV------SY-PFYANVSGLAAD--SDVLIVCCALTEE 212 (286)
Q Consensus 148 g~~vgIiG~G~iG-~~~A~~l~~~g--~~-V~~~~r~~~~~~------~~-~~~~~l~e~l~~--aDiV~~~lp~~~~ 212 (286)
-.++||||+|.++ +..+..+...+ +. |.+++++.++.. +. ..+.+++++++. .|+|++++|....
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 3589999999666 45888888766 35 456788876532 22 357899999986 5899999996543
No 400
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.60 E-value=0.51 Score=46.63 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=91.9
Q ss_pred eEEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCCCCEEEEEcCChHHHHHHHHhcc----
Q 043239 94 ILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVP---- 169 (286)
Q Consensus 94 I~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~g~~vgIiG~G~iG~~~A~~l~~---- 169 (286)
|.+.|.-- .-+|--+++.+|+.+|- .+++|...+|.|+|.|..|..+|+.+..
T Consensus 266 i~~FnDDi---QGTaaV~lAgll~Alr~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~ 322 (559)
T PTZ00317 266 YRCFNDDI---QGTGAVIAAGFLNALKL--------------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAAE 322 (559)
T ss_pred CCEecccc---hhHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 55555321 34666777888887764 3456889999999999999999998873
Q ss_pred CCC-------EEEEECCCCC----C---CC--------Cc--cc---ccCHHHhhcCC--CEEEEeccCChhhhhcccHH
Q 043239 170 FGC-------SIAYTSRKKK----P---GV--------SY--PF---YANVSGLAADS--DVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 170 ~g~-------~V~~~~r~~~----~---~~--------~~--~~---~~~l~e~l~~a--DiV~~~lp~~~~t~~~i~~~ 220 (286)
.|. +++.+|+..- . .. .. .. ..+|.|+++.. |+++-+- ...+.++++
T Consensus 323 ~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~e 398 (559)
T PTZ00317 323 YGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLS----GVGGVFTEE 398 (559)
T ss_pred cCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEec----CCCCCCCHH
Confidence 576 6888875431 1 11 00 11 34899999998 9887542 124689999
Q ss_pred HHhcCC---CCcEEEEcCCCccc---CHHHHHHHHHhCCeeEEEe
Q 043239 221 VMTALG---KEGVIINVGRGALI---DEKELVHFLVRGSLVELVL 259 (286)
Q Consensus 221 ~l~~mk---~g~ilvn~srg~~v---d~~al~~al~~~~i~ga~l 259 (286)
.+..|. +..+|.=.|+.... ..++.+++=+.+-|.+.+.
T Consensus 399 vv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs 443 (559)
T PTZ00317 399 VVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS 443 (559)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC
Confidence 999997 47899999887643 3344444333333544444
No 401
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=94.59 E-value=0.24 Score=48.77 Aligned_cols=91 Identities=10% Similarity=0.050 Sum_probs=65.7
Q ss_pred cCCCCEEEEEcC---ChHHHHHHHHhccCC-CEEEEECCCCCCCC----------C--cccccCHHHhhcCCCEE--EE-
Q 043239 145 TLGGKRVGIVGL---GSIGSEVAKRLVPFG-CSIAYTSRKKKPGV----------S--YPFYANVSGLAADSDVL--IV- 205 (286)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~----------~--~~~~~~l~e~l~~aDiV--~~- 205 (286)
.+.|.+|+++|- +++..+++..+..+| ++|.+..+..-... + +....+++++++++|+. +.
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 477999999998 699999999999998 89988876443211 1 22357899999999952 23
Q ss_pred ------eccCC-----hh--hhhcccHHHHhcCCCCcEEEEcC
Q 043239 206 ------CCALT-----EE--THHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 206 ------~lp~~-----~~--t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
.++.. .. -...++++.++.+|++++|.-+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 22211 01 23456888999999999998885
No 402
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.58 E-value=0.18 Score=46.72 Aligned_cols=104 Identities=14% Similarity=0.229 Sum_probs=61.6
Q ss_pred CEEEEEcCChHHHHHHHHhcc--------CCCEEE-EECCCCCCC--CC--------------cc--ccc--CHHHhh-c
Q 043239 149 KRVGIVGLGSIGSEVAKRLVP--------FGCSIA-YTSRKKKPG--VS--------------YP--FYA--NVSGLA-A 198 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~--------~g~~V~-~~~r~~~~~--~~--------------~~--~~~--~l~e~l-~ 198 (286)
++|+|+|+|.+|+.+++.|.. .+.+|+ +.+++.... .+ .. ... ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 379999999999999999875 456765 445443111 10 00 012 455553 4
Q ss_pred CCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCC
Q 043239 199 DSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI-DEKELVHFLVRGS 253 (286)
Q Consensus 199 ~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v-d~~al~~al~~~~ 253 (286)
++|+|+=|.|..++-... -.-....|+.|.-+|-.+-|.+. ....|.+..++++
T Consensus 81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence 689998888743211111 12234556788888887777664 4556666666554
No 403
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.55 E-value=0.1 Score=49.98 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=52.1
Q ss_pred cccCCCCEEEEEcC----------ChHHHHHHHHhccCC-CEEEEECCCCCCCC----CcccccCHHHhhcCCCEEEEec
Q 043239 143 GSTLGGKRVGIVGL----------GSIGSEVAKRLVPFG-CSIAYTSRKKKPGV----SYPFYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 143 ~~~l~g~~vgIiG~----------G~iG~~~A~~l~~~g-~~V~~~~r~~~~~~----~~~~~~~l~e~l~~aDiV~~~l 207 (286)
+.++.|++|+|+|+ ..-...+++.|...| .+|.+||+...... ......++++.+++||+|+++.
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45678999999998 457889999999996 99999998744321 1123478999999999999987
Q ss_pred c
Q 043239 208 A 208 (286)
Q Consensus 208 p 208 (286)
+
T Consensus 395 ~ 395 (415)
T PRK11064 395 D 395 (415)
T ss_pred C
Confidence 6
No 404
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.52 E-value=0.11 Score=48.32 Aligned_cols=83 Identities=7% Similarity=0.165 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-ChHHHHHHHHhccC--CC-EEEEECCC--CCCCCCc----ccccCHHHh-hcCCCEEEEeccCChhhhh
Q 043239 147 GGKRVGIVGL-GSIGSEVAKRLVPF--GC-SIAYTSRK--KKPGVSY----PFYANVSGL-AADSDVLIVCCALTEETHH 215 (286)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~A~~l~~~--g~-~V~~~~r~--~~~~~~~----~~~~~l~e~-l~~aDiV~~~lp~~~~t~~ 215 (286)
.+.+|+|||. |-+|+.+.+.|... -. ++...... ..+.... ..+.++++. ++++|++++++|.. ..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~s-- 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-AS-- 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-HH--
Confidence 4569999996 99999999999983 32 55544322 1111111 112344443 37899999999844 22
Q ss_pred cccHHHHhc-CCCCcEEEEcC
Q 043239 216 MINKDVMTA-LGKEGVIINVG 235 (286)
Q Consensus 216 ~i~~~~l~~-mk~g~ilvn~s 235 (286)
.+..+. .+.|+.+||.|
T Consensus 80 ---~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 80 ---AAYAEEATNAGCLVIDSS 97 (336)
T ss_pred ---HHHHHHHHHCCCEEEECC
Confidence 222222 25688999998
No 405
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.52 E-value=0.19 Score=46.41 Aligned_cols=31 Identities=39% Similarity=0.523 Sum_probs=27.2
Q ss_pred EEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
+|.|+|+|.+|.++++.|...|. ++.++|..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 58999999999999999999888 68888753
No 406
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.49 E-value=0.11 Score=47.11 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=45.1
Q ss_pred CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C-------cccccCHHHhhcCCCEEEE
Q 043239 147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S-------YPFYANVSGLAADSDVLIV 205 (286)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~-------~~~~~~l~e~l~~aDiV~~ 205 (286)
.|++|.|.| .|-||+.+++.|...|++|.+..|+..... . .....+++++++.+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 368999999 699999999999999999988776543210 0 0112346677888998876
Q ss_pred ecc
Q 043239 206 CCA 208 (286)
Q Consensus 206 ~lp 208 (286)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 407
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.45 E-value=0.32 Score=45.12 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=56.7
Q ss_pred EEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC-------cc--------cccCHHHhhcCCCEEE
Q 043239 150 RVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS-------YP--------FYANVSGLAADSDVLI 204 (286)
Q Consensus 150 ~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~-------~~--------~~~~l~e~l~~aDiV~ 204 (286)
+|+|+|. |.+|..+|..|...+. ++..+|+.... ..+ .. ...+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999886444 48888885432 211 00 0124467899999998
Q ss_pred EeccCCh---hhh-hcc--c----HH---HHhcC-CCCcEEEEcCCCcccCHHH
Q 043239 205 VCCALTE---ETH-HMI--N----KD---VMTAL-GKEGVIINVGRGALIDEKE 244 (286)
Q Consensus 205 ~~lp~~~---~t~-~~i--~----~~---~l~~m-k~g~ilvn~srg~~vd~~a 244 (286)
++.-... +++ .++ | ++ .+... ++.++++.++ .++|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8743211 111 111 0 11 12223 4778888886 5555544
No 408
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.40 E-value=0.32 Score=46.85 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc--cCHHHhhcCCCEEEEeccCCh---
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY--ANVSGLAADSDVLIVCCALTE--- 211 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~--~~l~e~l~~aDiV~~~lp~~~--- 211 (286)
+.++++.|+|.|.+|.++|+.|...|++|.++|....... +.... ...++.+.++|+|+..--..+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 5688999999999999999999999999999987554310 11111 112234568999887632222
Q ss_pred hhh-------hcccH-HHH-hcCC---CCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 212 ETH-------HMINK-DVM-TALG---KEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 212 ~t~-------~~i~~-~~l-~~mk---~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
... .++.+ +.+ ..++ ...+-|-=+.|......-+...|+....
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 137 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 211 12222 233 2232 1234455568888888888888876444
No 409
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.38 E-value=0.18 Score=46.49 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=56.8
Q ss_pred EEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC-----C----cccc-----cCHHHhhcCCCEEEEeccCCh-
Q 043239 150 RVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-----S----YPFY-----ANVSGLAADSDVLIVCCALTE- 211 (286)
Q Consensus 150 ~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-----~----~~~~-----~~l~e~l~~aDiV~~~lp~~~- 211 (286)
+|+|||. |.+|..+|-.|...+. ++..+|....... . .... .++.+.+++||+|+++.....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999876665 7888987662110 0 1111 134678999999998854321
Q ss_pred --hh--------hhcccH--HHHhcCCCCcEEEEcCCCcccCH
Q 043239 212 --ET--------HHMINK--DVMTALGKEGVIINVGRGALIDE 242 (286)
Q Consensus 212 --~t--------~~~i~~--~~l~~mk~g~ilvn~srg~~vd~ 242 (286)
.+ ..++.. ..+..-.|.+++++++. ++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 11 111110 12223368899999954 4553
No 410
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.37 E-value=0.28 Score=46.65 Aligned_cols=91 Identities=11% Similarity=0.192 Sum_probs=65.2
Q ss_pred cCCCCEEEEEcC-----C---hHHHHHHHHhccCCCEEEEECCCCCCC-C-------------C--cccccCHHHhhcCC
Q 043239 145 TLGGKRVGIVGL-----G---SIGSEVAKRLVPFGCSIAYTSRKKKPG-V-------------S--YPFYANVSGLAADS 200 (286)
Q Consensus 145 ~l~g~~vgIiG~-----G---~iG~~~A~~l~~~g~~V~~~~r~~~~~-~-------------~--~~~~~~l~e~l~~a 200 (286)
.+.|++|+|+|- | ++..+++..+..+|++|.+..+..-.. . + +....+++++++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 677999999999999999888754211 1 1 22357999999999
Q ss_pred CEEEEec----cC----------Ch-----------------hhhhcccHHHHhcCCCC-cEEEEcC
Q 043239 201 DVLIVCC----AL----------TE-----------------ETHHMINKDVMTALGKE-GVIINVG 235 (286)
Q Consensus 201 DiV~~~l----p~----------~~-----------------~t~~~i~~~~l~~mk~g-~ilvn~s 235 (286)
|+|.+-. .. .+ -...-++++.++.++++ ++|.-+.
T Consensus 264 DvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcL 330 (395)
T PRK07200 264 DIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCL 330 (395)
T ss_pred CEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCC
Confidence 9997752 10 00 12234677888888885 8988885
No 411
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.31 E-value=0.11 Score=47.26 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCCCcc--cccCHHH-hhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSYP--FYANVSG-LAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~~~~--~~~~l~e-~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
.++++.|+|.|.+|...++.++.+|++ |.+.++..++..... ...+..+ .-...|+|+-++... . .+ ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~---~~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-S---LI-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-H---HH-HHHH
Confidence 467899999999999999999999997 556665543322111 1111111 123579888876531 1 11 3567
Q ss_pred hcCCCCcEEEEcCC
Q 043239 223 TALGKEGVIINVGR 236 (286)
Q Consensus 223 ~~mk~g~ilvn~sr 236 (286)
+.++++..++.+|-
T Consensus 219 ~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 219 RRLAKGGEIVLAGF 232 (308)
T ss_pred HhhhcCcEEEEEee
Confidence 78899998888763
No 412
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.30 E-value=0.16 Score=46.26 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=52.0
Q ss_pred CEEEEEcCChHHHHHHHHhcc-CCCEEE-EECCCCCCC-------CCcc-cccCHHHhhc--CCCEEEEeccCChhhhhc
Q 043239 149 KRVGIVGLGSIGSEVAKRLVP-FGCSIA-YTSRKKKPG-------VSYP-FYANVSGLAA--DSDVLIVCCALTEETHHM 216 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~-~g~~V~-~~~r~~~~~-------~~~~-~~~~l~e~l~--~aDiV~~~lp~~~~t~~~ 216 (286)
.++||||.|.||+..+..+.. -++++. ++++++++. .+.. .+.+.+++++ +.|+|+++.|......
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-- 79 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-- 79 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence 479999999999998766654 456765 566655431 1222 2457888875 5788999988542211
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 043239 217 INKDVMTALGKEGVIINVG 235 (286)
Q Consensus 217 i~~~~l~~mk~g~ilvn~s 235 (286)
.....++.|..+++-.
T Consensus 80 ---~a~~al~aGk~VIdek 95 (285)
T TIGR03215 80 ---HARLLAELGKIVIDLT 95 (285)
T ss_pred ---HHHHHHHcCCEEEECC
Confidence 2233345676666654
No 413
>PLN02214 cinnamoyl-CoA reductase
Probab=94.28 E-value=0.13 Score=47.72 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC------------Cc-------ccccCHHHhhcCCCEEEE
Q 043239 146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV------------SY-------PFYANVSGLAADSDVLIV 205 (286)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~------------~~-------~~~~~l~e~l~~aDiV~~ 205 (286)
+++++|.|.|. |.||+.+++.|...|++|.+..|+..... .. ....+++++++.+|+|+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 57889999997 99999999999999999998887654210 01 112345677888998877
Q ss_pred ecc
Q 043239 206 CCA 208 (286)
Q Consensus 206 ~lp 208 (286)
+..
T Consensus 88 ~A~ 90 (342)
T PLN02214 88 TAS 90 (342)
T ss_pred ecC
Confidence 653
No 414
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.28 E-value=0.04 Score=44.10 Aligned_cols=34 Identities=44% Similarity=0.607 Sum_probs=29.2
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK 181 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~ 181 (286)
.++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5799999999999999999999998 788887543
No 415
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.26 E-value=0.28 Score=47.39 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=64.4
Q ss_pred CEEEEEcC-ChHHHHHHHHhccC-------CC--EEEEECCCCCCCCC---------------cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPF-------GC--SIAYTSRKKKPGVS---------------YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~-------g~--~V~~~~r~~~~~~~---------------~~~~~~l~e~l~~aDiV 203 (286)
.+|+|||. |.+|..+|-.|... |. +++.+|++.+...+ .....+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 38999999 99999999998765 44 68888987766431 01112445788999999
Q ss_pred EEeccCC--hh-h--------hhcccH--HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 043239 204 IVCCALT--EE-T--------HHMINK--DVMTA-LGKEGVIINVGRGALIDEKELVHFLVR 251 (286)
Q Consensus 204 ~~~lp~~--~~-t--------~~~i~~--~~l~~-mk~g~ilvn~srg~~vd~~al~~al~~ 251 (286)
++..-.. +. + ..++.. ..+.. ..+.+++|.++ .++|.-+.+-.-..
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 9975321 11 1 111111 12333 46789999996 66666665554333
No 416
>PRK14851 hypothetical protein; Provisional
Probab=94.21 E-value=0.11 Score=52.93 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=31.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR 179 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r 179 (286)
..|++++|+|+|+|.+|..++..|...|. ++..+|.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46899999999999999999999999888 6766663
No 417
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.31 Score=44.54 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=84.2
Q ss_pred CCccEEEEcCCCCCcCChhHHhhcCe-EEEecCCCCCcChHHHHHHHHHHHHhcchHHHHHHHcCCCCCCCCCCCcccCC
Q 043239 69 PALEIVVGSTAGIDHVDLQECRRRGI-LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLG 147 (286)
Q Consensus 69 ~~Lk~i~~~~~G~d~id~~~~~~~gI-~v~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l~ 147 (286)
++.=+|=+...|+-.+ ++..-++ +|.|+++.....=.+..| =++...+. .| .+.
T Consensus 103 ~D~iViRH~~egaa~~---~a~~~~~~pvINaGDG~~qHPTQ~LL-Dl~TI~~~--------------------~G-~~~ 157 (316)
T COG0540 103 VDAIVIRHPEEGAARL---LAEFSGVNPVINAGDGSHQHPTQALL-DLYTIREE--------------------FG-RLD 157 (316)
T ss_pred CCEEEEeCccccHHHH---HHHhcCCCceEECCCCCCCCccHHHH-HHHHHHHH--------------------hC-CcC
Confidence 3444444445554443 3333466 699987654443333322 22222222 12 288
Q ss_pred CCEEEEEc---CChHHHHHHHHhccCCCEEEEECCCCCCCC----------C-c-ccccCHHHhhcCCCEEEEeccCChh
Q 043239 148 GKRVGIVG---LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------S-Y-PFYANVSGLAADSDVLIVCCALTEE 212 (286)
Q Consensus 148 g~~vgIiG---~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~-~-~~~~~l~e~l~~aDiV~~~lp~~~~ 212 (286)
|.+|+|+| .|+..++.++.|..||.+|....+..-... + . ......+|+++++|++.+. ..-.+
T Consensus 158 gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l-RvQ~E 236 (316)
T COG0540 158 GLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML-RVQKE 236 (316)
T ss_pred CcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee-hhhHh
Confidence 99999999 899999999999999999999887543331 1 1 2234555699999999663 21111
Q ss_pred ----------hh--hcccHHHHhc-CCCCcEEEEcC
Q 043239 213 ----------TH--HMINKDVMTA-LGKEGVIINVG 235 (286)
Q Consensus 213 ----------t~--~~i~~~~l~~-mk~g~ilvn~s 235 (286)
.+ +.+....+.. +|+++++.--+
T Consensus 237 R~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP~ 272 (316)
T COG0540 237 RFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHPL 272 (316)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECCC
Confidence 11 1112234455 88888888765
No 418
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=94.19 E-value=0.12 Score=50.91 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=62.4
Q ss_pred ccCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCCCEEEEeccCChhhhhcccHHHH
Q 043239 144 STLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l 222 (286)
..+.|++..++|-.. +|.+++..|+.....|+++-.. ..++.|.+.++|+|+.++- ..+++..+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG----~PefVKgd-- 222 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIG----QPEFVKGD-- 222 (935)
T ss_pred CccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcC----Ccceeecc--
Confidence 458999999999765 5999999999988899875321 3588999999999999975 23344443
Q ss_pred hcCCCCcEEEEcCCCccc
Q 043239 223 TALGKEGVIINVGRGALI 240 (286)
Q Consensus 223 ~~mk~g~ilvn~srg~~v 240 (286)
.+|||+++||++--.+-
T Consensus 223 -WiKpGavVIDvGINyvp 239 (935)
T KOG4230|consen 223 -WIKPGAVVIDVGINYVP 239 (935)
T ss_pred -cccCCcEEEEccccccC
Confidence 46899999999854433
No 419
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.16 E-value=0.24 Score=46.23 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=54.7
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCccc---cc---CHHHhhcCCCEEEEeccCChhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPF---YA---NVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~---~~---~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
.|.+|.|.|.|.+|...++.++.+|.+|++.+.+.++. .+... .. .+.+.....|+++-++... .
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~-- 259 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-H-- 259 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-H--
Confidence 57899999999999999999999999987766544321 12211 11 2233334579888776421 1
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q 043239 215 HMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~s 235 (286)
.+ ...++.++++..++.++
T Consensus 260 -~~-~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 260 -AL-GPLLGLLKVNGKLITLG 278 (360)
T ss_pred -HH-HHHHHHhcCCcEEEEeC
Confidence 11 23566677777777765
No 420
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.16 E-value=0.071 Score=48.33 Aligned_cols=58 Identities=33% Similarity=0.398 Sum_probs=39.8
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcC--CCEEEEeccC
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAAD--SDVLIVCCAL 209 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~--aDiV~~~lp~ 209 (286)
|+|.|+| -|.+|+.+.+.|...|++|+.++|+.-. ......+.+++.+ .|+|+.|...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d---l~d~~~~~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD---LTDPEAVAKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS----TTSHHHHHHHHHHH--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC---CCCHHHHHHHHHHhCCCeEecccee
Confidence 6899999 6999999999999999999999876222 1223344555543 7999888643
No 421
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.15 E-value=0.09 Score=48.78 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=57.9
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCC---CCCC-----Ccccc----cCHHH--hhcCCCEEEEeccCChh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK---KPGV-----SYPFY----ANVSG--LAADSDVLIVCCALTEE 212 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~---~~~~-----~~~~~----~~l~e--~l~~aDiV~~~lp~~~~ 212 (286)
.|.+|.|+|.|.+|...++.++..|.+|++.+++. ++.. ++... .++.+ .....|+|+-++... .
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~ 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence 57899999999999999999999999999988742 2211 21111 11111 224579999887522 1
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q 043239 213 THHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 213 t~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
.+ .+.++.|+++..++.++.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 22 456788999998888764
No 422
>PRK10206 putative oxidoreductase; Provisional
Probab=94.12 E-value=0.084 Score=49.23 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=42.8
Q ss_pred CEEEEEcCChHHHH-HHHHhcc--CCCEEE-EECCCCCCCC-----C-cccccCHHHhhc--CCCEEEEeccCCh
Q 043239 149 KRVGIVGLGSIGSE-VAKRLVP--FGCSIA-YTSRKKKPGV-----S-YPFYANVSGLAA--DSDVLIVCCALTE 211 (286)
Q Consensus 149 ~~vgIiG~G~iG~~-~A~~l~~--~g~~V~-~~~r~~~~~~-----~-~~~~~~l~e~l~--~aDiV~~~lp~~~ 211 (286)
.++||||+|.+++. .+..+.. -+++|. ++|++.+... + ...+.+++++++ +.|+|++++|...
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 37999999998753 3454422 357775 6787654321 1 234678999996 5799999998553
No 423
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.11 E-value=0.21 Score=45.56 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=26.4
Q ss_pred EEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR 179 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r 179 (286)
+|.|+|+|.+|.++++.|...|. ++.+.|.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~ 31 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDM 31 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 58999999999999999998888 6777774
No 424
>PLN02427 UDP-apiose/xylose synthase
Probab=94.11 E-value=0.11 Score=48.94 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=47.2
Q ss_pred cccCCCCEEEEEc-CChHHHHHHHHhccC-CCEEEEECCCCCCCC------------Ccc-------cccCHHHhhcCCC
Q 043239 143 GSTLGGKRVGIVG-LGSIGSEVAKRLVPF-GCSIAYTSRKKKPGV------------SYP-------FYANVSGLAADSD 201 (286)
Q Consensus 143 ~~~l~g~~vgIiG-~G~iG~~~A~~l~~~-g~~V~~~~r~~~~~~------------~~~-------~~~~l~e~l~~aD 201 (286)
|+.++.++|.|.| .|-||+.+++.|... |++|.+++|+..... ... ...++.++++++|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 6678889999999 599999999999987 589998887643210 010 1234566788899
Q ss_pred EEEEec
Q 043239 202 VLIVCC 207 (286)
Q Consensus 202 iV~~~l 207 (286)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 886654
No 425
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.05 E-value=0.024 Score=44.16 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=57.7
Q ss_pred cCChHHHHHHHHhccC----CCEEE-EECCC--CCCC-----CCcccccCHHHhhc--CCCEEEEeccCChhhhhcccHH
Q 043239 155 GLGSIGSEVAKRLVPF----GCSIA-YTSRK--KKPG-----VSYPFYANVSGLAA--DSDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 155 G~G~iG~~~A~~l~~~----g~~V~-~~~r~--~~~~-----~~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~~ 220 (286)
|+|.||+.+++.+... +++|. +++|+ .... .......++++++. ..|+|+=|.+ .+... +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHH----HH
Confidence 8999999999999865 56765 56666 1111 12334678999988 8999988854 22222 23
Q ss_pred HHhcCCCCcEEEEcCCCccc---CHHHHHHHHHhCCe
Q 043239 221 VMTALGKEGVIINVGRGALI---DEKELVHFLVRGSL 254 (286)
Q Consensus 221 ~l~~mk~g~ilvn~srg~~v---d~~al~~al~~~~i 254 (286)
....|+.|.-+|-.+-+.+. ..+.|.++.++++.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 44556788888988888877 33444454454443
No 426
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.04 E-value=0.12 Score=48.08 Aligned_cols=36 Identities=28% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCC
Q 043239 146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKK 181 (286)
Q Consensus 146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~ 181 (286)
+++++|.|.| .|-+|+.+++.|...|++|+++++..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6778999999 59999999999999999999998743
No 427
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.03 E-value=0.13 Score=46.04 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=57.0
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC-----Cccc---ccCHHH----hh--cCCCEEEEeccCCh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV-----SYPF---YANVSG----LA--ADSDVLIVCCALTE 211 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~-----~~~~---~~~l~e----~l--~~aDiV~~~lp~~~ 211 (286)
.|.+|.|+|.|.+|...++.++.+|.+ |++.+++.++.. +... ..+..+ +. ...|+++-++....
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 578999999999999999999999996 887776654321 2211 111111 21 24799888764221
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCC
Q 043239 212 ETHHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
.+ ...++.++++..++.++-
T Consensus 200 ----~~-~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 200 ----AV-RACLESLDVGGTAVLAGS 219 (280)
T ss_pred ----HH-HHHHHHhcCCCEEEEecc
Confidence 11 345777899999998873
No 428
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.01 E-value=0.12 Score=47.98 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=23.3
Q ss_pred EEEEEcCChHHHHHHHHhccCC----CEEEEEC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFG----CSIAYTS 178 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g----~~V~~~~ 178 (286)
+|||.|+|+||+.+.+.+...+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 5899999999999999987643 6776543
No 429
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.00 E-value=0.12 Score=48.54 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=43.7
Q ss_pred CCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHhhcCCCEEEEec
Q 043239 147 GGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~l~~aDiV~~~l 207 (286)
.+|+|.|.|. |.||+.+++.|...|++|.+.+|...... ... ...++..++.++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5789999996 99999999999999999999887543211 001 1123345567899887664
No 430
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.97 E-value=0.18 Score=46.71 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=43.3
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC-------EEEEECCCCCC--CCC---------------cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC-------SIAYTSRKKKP--GVS---------------YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~-------~V~~~~r~~~~--~~~---------------~~~~~~l~e~l~~aDiV 203 (286)
.+|+|||. |.+|..+|..|...|. ++..+|..... ..+ .....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 38999998 9999999999887664 68888885422 211 01113456789999999
Q ss_pred EEecc
Q 043239 204 IVCCA 208 (286)
Q Consensus 204 ~~~lp 208 (286)
+++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 98754
No 431
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=93.95 E-value=0.45 Score=43.37 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCC-hHHHHHHHHhccCCCEEEEECCCCCCCC--------------C--cccccCHHHhhcCCCEEEEecc
Q 043239 146 LGGKRVGIVGLG-SIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------S--YPFYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 146 l~g~~vgIiG~G-~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------~--~~~~~~l~e~l~~aDiV~~~lp 208 (286)
++|++++.+|-| +|+.++......+|++|.+..+..-... + .....++++.++.+|+|..=+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 899999999955 6899999999999999988876543321 1 2235789999999999976432
Q ss_pred C--Chhhh-----------hcccHHHHhcCCCCcEEEEcC
Q 043239 209 L--TEETH-----------HMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 209 ~--~~~t~-----------~~i~~~~l~~mk~g~ilvn~s 235 (286)
. .++.+ .-++.++++..+++++|.-|-
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 2 12221 567888899889999999984
No 432
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.94 E-value=0.12 Score=45.42 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=33.8
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
++.|+++.|.|. |.+|..+|+.|...|++|.+.+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999985 99999999999999999999888653
No 433
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.93 E-value=0.1 Score=46.02 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=46.3
Q ss_pred cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCC-------CCccc--------ccCHHHhh-cCCCEEEEec
Q 043239 145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPG-------VSYPF--------YANVSGLA-ADSDVLIVCC 207 (286)
Q Consensus 145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------~~~~~--------~~~l~e~l-~~aDiV~~~l 207 (286)
...+++|.|+| .|.+|+.+++.|...|++|++..|+.++. ..+.. ..++.+.+ ...|+|+.+.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 46788999999 59999999999999999998887764321 01110 12334455 5799999776
Q ss_pred cC
Q 043239 208 AL 209 (286)
Q Consensus 208 p~ 209 (286)
+.
T Consensus 94 g~ 95 (251)
T PLN00141 94 GF 95 (251)
T ss_pred CC
Confidence 54
No 434
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.90 E-value=0.12 Score=49.10 Aligned_cols=66 Identities=24% Similarity=0.259 Sum_probs=47.9
Q ss_pred cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCC-------------CCcc-------cccCHHHhhc---
Q 043239 143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPG-------------VSYP-------FYANVSGLAA--- 198 (286)
Q Consensus 143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~-------------~~~~-------~~~~l~e~l~--- 198 (286)
++...+++|.|+|. |.||+.+++.|...|++|.+.+|+.... .+.. ...++.++++
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhC
Confidence 44577889999985 9999999999999999999888865321 0111 1234555666
Q ss_pred -CCCEEEEecc
Q 043239 199 -DSDVLIVCCA 208 (286)
Q Consensus 199 -~aDiV~~~lp 208 (286)
.+|+|+.|+.
T Consensus 135 ~~~D~Vi~~aa 145 (390)
T PLN02657 135 DPVDVVVSCLA 145 (390)
T ss_pred CCCcEEEECCc
Confidence 5899988764
No 435
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.41 Score=42.00 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=34.8
Q ss_pred cccCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 143 GSTLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 143 ~~~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
..+++|+++.|.|. |.||..+++.|...|++|++.+|+..
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 34588999999995 89999999999999999999888654
No 436
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.89 E-value=0.26 Score=43.58 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=26.2
Q ss_pred EEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR 179 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r 179 (286)
+|.|+|+|.+|.++++.|...|. ++.++|.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDM 31 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999998887 6777764
No 437
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.89 E-value=0.11 Score=47.07 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=44.6
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc-------cccCHHHhhcCCCEEEEecc
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP-------FYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~-------~~~~l~e~l~~aDiV~~~lp 208 (286)
+++.|.| .|.+|+.+++.|...|++|.+.+|+..... +.. ...++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4788998 599999999999999999999988755421 111 12345677888998877654
No 438
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.82 E-value=0.17 Score=53.54 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC--------------------------Cc--------cccc
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------------------------SY--------PFYA 191 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------------------------~~--------~~~~ 191 (286)
-.|++|+|||-|..|.+.|..|...|+.|++|.|+.+.-- +. ....
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence 5799999999999999999999999999999999875310 11 1236
Q ss_pred CHHHhhcCCCEEEEeccCC
Q 043239 192 NVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 192 ~l~e~l~~aDiV~~~lp~~ 210 (286)
+++++.+.-|.|+++.-.|
T Consensus 1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred cHHHHhhccCeEEEEeCCC
Confidence 8999999999999986544
No 439
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.81 E-value=0.059 Score=57.08 Aligned_cols=121 Identities=10% Similarity=0.125 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCChHHHHHHHHhccCCCEE-------------------------EEE--CCCCC---CCCC--c------
Q 043239 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCSI-------------------------AYT--SRKKK---PGVS--Y------ 187 (286)
Q Consensus 146 l~g~~vgIiG~G~iG~~~A~~l~~~g~~V-------------------------~~~--~r~~~---~~~~--~------ 187 (286)
+.-.++.|+|.|++|+..++.+..+|++. ++. .+... ...+ +
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 44578999999999999999988876541 100 00000 0000 0
Q ss_pred ----ccccC-HHHhhcCCCEEEEeccCChhhhhcccHH-HHhcCCCCc----EEEEcC--CCcccCHH------------
Q 043239 188 ----PFYAN-VSGLAADSDVLIVCCALTEETHHMINKD-VMTALGKEG----VIINVG--RGALIDEK------------ 243 (286)
Q Consensus 188 ----~~~~~-l~e~l~~aDiV~~~lp~~~~t~~~i~~~-~l~~mk~g~----ilvn~s--rg~~vd~~------------ 243 (286)
..... +++.+..+|+++.|+-..+....++.++ +.+.||+|+ +|+|++ .|+.+..-
T Consensus 281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D~gG~ie~~~~~Tt~~~P~~~ 360 (1042)
T PLN02819 281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTSIEKPFFR 360 (1042)
T ss_pred cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccCCCCCeeecccCCCCcCCeEe
Confidence 00011 3467889999999997777788888888 788899998 899987 44444222
Q ss_pred ------HHHHHHHhCCeeEEEeeccCCCC
Q 043239 244 ------ELVHFLVRGSLVELVLMCLRTSL 266 (286)
Q Consensus 244 ------al~~al~~~~i~ga~lDv~~~e~ 266 (286)
...+-.....+..+++|-...+.
T Consensus 361 ~~~~~~~~~~~~~~~gv~~~~VdNlP~~l 389 (1042)
T PLN02819 361 YNPSNNSYHDDMDGDGILCMAVDILPTEF 389 (1042)
T ss_pred ecccccccccccCCCCeEEEEECCccccC
Confidence 11122234467778888887663
No 440
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.80 E-value=0.38 Score=46.03 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=66.2
Q ss_pred EEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----------Ccccc--cCHHHhhcCCCEEEEec--cC-Chhh
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----------SYPFY--ANVSGLAADSDVLIVCC--AL-TEET 213 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----------~~~~~--~~l~e~l~~aDiV~~~l--p~-~~~t 213 (286)
++.|+|+|..|.++|+.|+..|++|.++|....... +.... .+ .+.+.++|+|+..- |. ++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 478999999999999999999999999997543211 11111 23 34567899887752 32 2211
Q ss_pred h-------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCe
Q 043239 214 H-------HMINKD-VM-TALGKEGVIINVGRGALIDEKELVHFLVRGSL 254 (286)
Q Consensus 214 ~-------~~i~~~-~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~i 254 (286)
. .++.+. .+ ..++...+-|-=+.|......-+...|+..+.
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~ 129 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL 129 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 123222 22 33333345555578998888888888887553
No 441
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.80 E-value=0.24 Score=44.08 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=54.5
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCC-----------CEEEEECCCCCCCC------------C----------------c
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFG-----------CSIAYTSRKKKPGV------------S----------------Y 187 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g-----------~~V~~~~r~~~~~~------------~----------------~ 187 (286)
+..+|.|||+|.+|..+++.|...| .+++++|...=... + .
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 5679999999999999999998653 27888875321100 0 0
Q ss_pred --c----cccCHHHhhcCCCEEEEeccCChhhhhcccHHHHh--cCCCCcEEEEcCC
Q 043239 188 --P----FYANVSGLAADSDVLIVCCALTEETHHMINKDVMT--ALGKEGVIINVGR 236 (286)
Q Consensus 188 --~----~~~~l~e~l~~aDiV~~~lp~~~~t~~~i~~~~l~--~mk~g~ilvn~sr 236 (286)
. .+.. ++.+.++|+|+.|+ ++-+++..+++.... .| ...+++.|.
T Consensus 90 ~i~a~~~~~~~-~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~~~~~--~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVER-SSTLHRPDIVIGCV-DNRAARLAILRAFEGGYSG--YAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCc-hhhhcCCCEEEECC-CCHHHHHHHHHHHHHhccc--ccceecccC
Confidence 0 0111 33456789888877 466677777665544 22 246777764
No 442
>PRK05865 hypothetical protein; Provisional
Probab=93.79 E-value=0.31 Score=50.84 Aligned_cols=90 Identities=20% Similarity=0.335 Sum_probs=56.8
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC--Cc-------ccccCHHHhhcCCCEEEEeccCChhh--hhc
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV--SY-------PFYANVSGLAADSDVLIVCCALTEET--HHM 216 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--~~-------~~~~~l~e~l~~aDiV~~~lp~~~~t--~~~ 216 (286)
|+|.|.| .|.||+.+++.|.+.|++|.+.+|+..... .. ....++.++++.+|+|+.+....... .++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 4789998 499999999999999999999888643211 11 11234566788899988775432110 001
Q ss_pred c-cHHHHhcCCCC--cEEEEcCCCc
Q 043239 217 I-NKDVMTALGKE--GVIINVGRGA 238 (286)
Q Consensus 217 i-~~~~l~~mk~g--~ilvn~srg~ 238 (286)
. ....++.|+.. ..||.+|...
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 12344445332 3688888765
No 443
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=93.72 E-value=0.74 Score=42.90 Aligned_cols=96 Identities=13% Similarity=0.117 Sum_probs=63.5
Q ss_pred C-CCCEEEEEcCC-------hHHHHHHHHhccCCCEEEEECC-CCCCCC--------------C--cccccCHHHhhcCC
Q 043239 146 L-GGKRVGIVGLG-------SIGSEVAKRLVPFGCSIAYTSR-KKKPGV--------------S--YPFYANVSGLAADS 200 (286)
Q Consensus 146 l-~g~~vgIiG~G-------~iG~~~A~~l~~~g~~V~~~~r-~~~~~~--------------~--~~~~~~l~e~l~~a 200 (286)
+ .|++|+|+|.| ++..+++..+..+|++|.+..+ ..-... + +....+++++++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68899776543 7888999999999999998887 332111 1 22357899999999
Q ss_pred CEEEEeccC------C-h---h-----hhhcccHHHHhcCCCCcEEEEcC---CCcccCH
Q 043239 201 DVLIVCCAL------T-E---E-----THHMINKDVMTALGKEGVIINVG---RGALIDE 242 (286)
Q Consensus 201 DiV~~~lp~------~-~---~-----t~~~i~~~~l~~mk~g~ilvn~s---rg~~vd~ 242 (286)
|+|..-.-. . . + ....++++.++..+ +++|.-+. ||.=|+.
T Consensus 246 Dvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~-~~i~mHcLP~~Rg~Ei~~ 304 (335)
T PRK04523 246 DVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCLPLRRNVKVTD 304 (335)
T ss_pred CEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCCC-CCEEECCCCCCCCCeeCH
Confidence 999764311 0 0 1 12446777777654 67777774 5543433
No 444
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=93.72 E-value=0.16 Score=47.38 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=49.3
Q ss_pred EEEEEc-CChHHHHHHHHhccCCCE---EEEECCCCCC--CC---Ccc-cccCH-HHhhcCCCEEEEeccCChhhhhccc
Q 043239 150 RVGIVG-LGSIGSEVAKRLVPFGCS---IAYTSRKKKP--GV---SYP-FYANV-SGLAADSDVLIVCCALTEETHHMIN 218 (286)
Q Consensus 150 ~vgIiG-~G~iG~~~A~~l~~~g~~---V~~~~r~~~~--~~---~~~-~~~~l-~e~l~~aDiV~~~lp~~~~t~~~i~ 218 (286)
+|+|+| .|.+|+.+++.|...++. +.++.+.... .. +.. ...++ .+.+.++|+++.|+|.. .+..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 899999999999987664 3333333222 11 110 11122 23458899999999854 222221
Q ss_pred HHHHhcCCCCcEEEEcC
Q 043239 219 KDVMTALGKEGVIINVG 235 (286)
Q Consensus 219 ~~~l~~mk~g~ilvn~s 235 (286)
... ++.|+.+||.|
T Consensus 79 ~~~---~~~G~~VID~s 92 (339)
T TIGR01296 79 PKA---AKCGAIVIDNT 92 (339)
T ss_pred HHH---HHCCCEEEECC
Confidence 122 35688899887
No 445
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.69 E-value=0.19 Score=46.61 Aligned_cols=59 Identities=17% Similarity=0.078 Sum_probs=42.9
Q ss_pred EEEEEcC-ChHHHHHHHHhccCC-------CEEEEECCCCCC--CCC----cc-----------cccCHHHhhcCCCEEE
Q 043239 150 RVGIVGL-GSIGSEVAKRLVPFG-------CSIAYTSRKKKP--GVS----YP-----------FYANVSGLAADSDVLI 204 (286)
Q Consensus 150 ~vgIiG~-G~iG~~~A~~l~~~g-------~~V~~~~r~~~~--~~~----~~-----------~~~~l~e~l~~aDiV~ 204 (286)
+|+|+|. |.+|..++..|...+ .+|..+|+.... ..+ .. ...++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 7999999 999999999998644 478889885422 221 00 1346668899999998
Q ss_pred Eecc
Q 043239 205 VCCA 208 (286)
Q Consensus 205 ~~lp 208 (286)
.+.-
T Consensus 84 ~tAG 87 (325)
T cd01336 84 LVGA 87 (325)
T ss_pred EeCC
Confidence 8743
No 446
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.54 E-value=0.14 Score=45.64 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=42.0
Q ss_pred EEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcccccCHHHhhcCC--CEEEEecc
Q 043239 150 RVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS--DVLIVCCA 208 (286)
Q Consensus 150 ~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~~~~~l~e~l~~a--DiV~~~lp 208 (286)
+|.|+| .|.+|+.+++.|.+.|++|.+.+|+.. ......++.++++.+ |+|+.+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 477888 599999999999999999999988622 122234566677765 99887654
No 447
>PRK08628 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.15 Score=44.80 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=33.9
Q ss_pred ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
.+++|+++.|.| .|.||+.+|+.|.+.|++|.+.+|+..
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 358899999998 578999999999999999988887654
No 448
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.52 E-value=0.42 Score=43.54 Aligned_cols=38 Identities=37% Similarity=0.533 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKK 181 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~ 181 (286)
+.|.+.+|.|+|+|.+|.++|+.|...|. +++.+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 45889999999999999999999999998 688888654
No 449
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.52 E-value=0.32 Score=45.46 Aligned_cols=82 Identities=15% Similarity=0.283 Sum_probs=50.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHhcc-CCCE---EEEE-CC-CCCCCCCc----ccc--cCHHHhhcCCCEEEEeccCChhh
Q 043239 147 GGKRVGIVGL-GSIGSEVAKRLVP-FGCS---IAYT-SR-KKKPGVSY----PFY--ANVSGLAADSDVLIVCCALTEET 213 (286)
Q Consensus 147 ~g~~vgIiG~-G~iG~~~A~~l~~-~g~~---V~~~-~r-~~~~~~~~----~~~--~~l~e~l~~aDiV~~~lp~~~~t 213 (286)
.+.+|||||. |..|+.+.+.|.. -.+. +..+ +. +..+...+ ... .+.+ .++++|++++++|.. .+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChH-HH
Confidence 3469999996 9999999999984 4555 4333 22 22222111 011 2333 357899999999843 22
Q ss_pred hhcccHHHHhc-CCCCcEEEEcC
Q 043239 214 HHMINKDVMTA-LGKEGVIINVG 235 (286)
Q Consensus 214 ~~~i~~~~l~~-mk~g~ilvn~s 235 (286)
. +..+. .+.|+.+||.|
T Consensus 82 ~-----~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 82 R-----QFVNQAVSSGAIVIDNT 99 (347)
T ss_pred H-----HHHHHHHHCCCEEEECc
Confidence 2 22222 35688889887
No 450
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.50 E-value=0.26 Score=45.64 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=55.9
Q ss_pred CCCEEEEEcCChHHHHHHHHhcc-CC-CEEEEECCCCCCCC---CcccccCHHHhhc--CCCEEEEeccCChhhhhcccH
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVP-FG-CSIAYTSRKKKPGV---SYPFYANVSGLAA--DSDVLIVCCALTEETHHMINK 219 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~-~g-~~V~~~~r~~~~~~---~~~~~~~l~e~l~--~aDiV~~~lp~~~~t~~~i~~ 219 (286)
.|.+|.|+|.|.+|...++.++. +| .+|++.++++++.. ........++... ..|+|+-++... .+...+ .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence 47899999999999999888875 44 57988888765432 1111111122222 379998877521 111122 3
Q ss_pred HHHhcCCCCcEEEEcCC
Q 043239 220 DVMTALGKEGVIINVGR 236 (286)
Q Consensus 220 ~~l~~mk~g~ilvn~sr 236 (286)
..++.++++..++.++-
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 56778899988887763
No 451
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.49 E-value=0.18 Score=48.02 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=52.2
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC---CCcc-------cccCHHH-hhcCCCEEEEeccCChhhhhc
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG---VSYP-------FYANVSG-LAADSDVLIVCCALTEETHHM 216 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~---~~~~-------~~~~l~e-~l~~aDiV~~~lp~~~~t~~~ 216 (286)
..++-|+|+|.+|+.+++.|++.|.++++.+...... .+.. ..+.|++ =+++|+.|+++.+.+.++..+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 4579999999999999999999898887776542211 1111 1122222 257899998888765554433
Q ss_pred ccHHHHhcCCCCcEEE
Q 043239 217 INKDVMTALGKEGVII 232 (286)
Q Consensus 217 i~~~~l~~mk~g~ilv 232 (286)
+ ...+.+.|...+|
T Consensus 320 v--L~ar~l~p~~kII 333 (393)
T PRK10537 320 V--LAAKEMSSDVKTV 333 (393)
T ss_pred H--HHHHHhCCCCcEE
Confidence 3 3344555654333
No 452
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.46 E-value=0.24 Score=45.20 Aligned_cols=62 Identities=24% Similarity=0.209 Sum_probs=44.5
Q ss_pred CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C-------cccccCHHHhhcCCCEEEE
Q 043239 147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S-------YPFYANVSGLAADSDVLIV 205 (286)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~-------~~~~~~l~e~l~~aDiV~~ 205 (286)
.|+++.|.| .|.||+.+++.|...|++|.+..|+..... . .....+++++++..|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 378999998 599999999999999999987766543210 0 1112345677888998877
Q ss_pred ecc
Q 043239 206 CCA 208 (286)
Q Consensus 206 ~lp 208 (286)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 653
No 453
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.45 E-value=0.32 Score=45.46 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=49.8
Q ss_pred CEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCCC---C----Cc----------c--c--ccCHHHhhcCCCEEEE
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKPG---V----SY----------P--F--YANVSGLAADSDVLIV 205 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~---~----~~----------~--~--~~~l~e~l~~aDiV~~ 205 (286)
.+|+|+| .|.+|+.+++.|..+.. ++.++.++.... . +. . . ..+.+ .+.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence 5899998 89999999999987644 777663322111 0 01 0 0 11333 4478999999
Q ss_pred eccCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 043239 206 CCALTEETHHMINKDVMTAL-GKEGVIINVG 235 (286)
Q Consensus 206 ~lp~~~~t~~~i~~~~l~~m-k~g~ilvn~s 235 (286)
++|.... . +..+.+ +.|..+||.+
T Consensus 83 a~p~~~s-~-----~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVA-G-----EVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhHH-H-----HHHHHHHHCCCEEEECC
Confidence 9985422 2 222222 4577778876
No 454
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=93.43 E-value=0.2 Score=46.10 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=42.3
Q ss_pred CEEEEEcCChHHHHHHHHhccCC--CEEEEECCCCCCCCCc---------------cccc-CHHHhhcCCCEEEEec
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFG--CSIAYTSRKKKPGVSY---------------PFYA-NVSGLAADSDVLIVCC 207 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g--~~V~~~~r~~~~~~~~---------------~~~~-~l~e~l~~aDiV~~~l 207 (286)
++|+|||.|.+|+++|-.|...+ -++..+|...+...+. .... .-.+.+++||+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 48999999999999999996544 3788999885443310 0111 1146789999999986
No 455
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.39 E-value=0.12 Score=50.29 Aligned_cols=109 Identities=16% Similarity=0.208 Sum_probs=67.4
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccccc--cCHHHhhcCCCEEEEeccCCh
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYPFY--ANVSGLAADSDVLIVCCALTE 211 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~~~--~~l~e~l~~aDiV~~~lp~~~ 211 (286)
..+.+++|.|+|.|.+|.++|+.|+..|++|++++++..... +.... ... +....+|+|+++.-..+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWRP 90 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcCC
Confidence 357789999999999999999999999999999986543211 11111 111 13456899988753222
Q ss_pred hhh----------hcccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 212 ETH----------HMINK-DVM-TALGK----EGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 212 ~t~----------~~i~~-~~l-~~mk~----g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
.+. .++.+ +.+ ..+.+ ..+-|-=+.|......-+...|+...
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 211 12222 222 33422 13444446888888888888887643
No 456
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.37 E-value=0.14 Score=47.57 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=46.7
Q ss_pred cccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC----------Ccc-------cccCHHHhhcCCCEEE
Q 043239 143 GSTLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV----------SYP-------FYANVSGLAADSDVLI 204 (286)
Q Consensus 143 ~~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~----------~~~-------~~~~l~e~l~~aDiV~ 204 (286)
+++-++++|.|.| .|-||+.+++.|...|++|++.+|+..... ... ....+.+++++.|+|+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 5677899999999 699999999999999999998777543210 011 1123556677889876
Q ss_pred Eec
Q 043239 205 VCC 207 (286)
Q Consensus 205 ~~l 207 (286)
-+.
T Consensus 85 h~A 87 (353)
T PLN02896 85 HVA 87 (353)
T ss_pred ECC
Confidence 654
No 457
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.34 E-value=0.24 Score=45.67 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=56.0
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC--EEEEECCCCCCCC-------C---ccc--c---cCHHHhhcCCCEEEEeccCC
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC--SIAYTSRKKKPGV-------S---YPF--Y---ANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~-------~---~~~--~---~~l~e~l~~aDiV~~~lp~~ 210 (286)
++|+|||. |.+|..+|-.|...|. ++..+|.. .... . ... . .++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 48999999 9999999999987775 78888876 2111 0 111 1 23457899999999875431
Q ss_pred --h-hhhhc-c--c----HH---HHhcCCCCcEEEEcCCC
Q 043239 211 --E-ETHHM-I--N----KD---VMTALGKEGVIINVGRG 237 (286)
Q Consensus 211 --~-~t~~~-i--~----~~---~l~~mk~g~ilvn~srg 237 (286)
+ +++.- + | ++ .+..-.|.+++++++..
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 1 11211 1 1 11 22233688999999655
No 458
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.33 E-value=0.15 Score=44.07 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=28.7
Q ss_pred EEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 150 RVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 150 ~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
++.|.|. |.||+.+++.|...|++|+..+|+.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~ 35 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD 35 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5778875 89999999999999999998888654
No 459
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=93.26 E-value=0.18 Score=44.59 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCC
Q 043239 145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRK 180 (286)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~ 180 (286)
++.||++.|.|. +.||.++|+.|...|++|++..++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 467999999997 489999999999999999776554
No 460
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.25 E-value=0.36 Score=41.76 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCC
Q 043239 146 LGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRK 180 (286)
Q Consensus 146 l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~ 180 (286)
+.++++.|.| .|.+|+.+|+.|...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 6788999998 5999999999999999998776554
No 461
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.22 E-value=0.56 Score=43.70 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=58.3
Q ss_pred CEEEEEcCChHHHHHHHHhcc--------CC--CEEEE-ECCCCCC--CCCc---------------cc--------ccC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVP--------FG--CSIAY-TSRKKKP--GVSY---------------PF--------YAN 192 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~--------~g--~~V~~-~~r~~~~--~~~~---------------~~--------~~~ 192 (286)
.+|+|+|+|.+|+.+++.|.. +| .+|.+ .+++... ..+. .. ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998876 56 45543 3443211 0010 00 115
Q ss_pred HHHhh--cCCCEEEEeccCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCC
Q 043239 193 VSGLA--ADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI-DEKELVHFLVRGS 253 (286)
Q Consensus 193 l~e~l--~~aDiV~~~lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg~~v-d~~al~~al~~~~ 253 (286)
+++++ .++|+|+-+.+. +.... -....++.|.-+|-...|.+- ..+.|.+..++++
T Consensus 83 ~~ell~~~~~DVvVd~t~~-~~a~~----~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~ 141 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTND-KNAHE----WHLEALKEGKSVVTSNKPPIAFHYDELLDLANERN 141 (336)
T ss_pred HHHHHhcCCCCEEEECCCc-HHHHH----HHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcC
Confidence 67777 479999877642 22222 233345677767766555332 4556666555544
No 462
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=93.20 E-value=0.19 Score=44.72 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=41.9
Q ss_pred EEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCCCcc-------cccCHHHhhcCCCEEEEecc
Q 043239 152 GIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYP-------FYANVSGLAADSDVLIVCCA 208 (286)
Q Consensus 152 gIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~~~~-------~~~~l~e~l~~aDiV~~~lp 208 (286)
.|.| .|.||+.+++.|...|++|++.+|+........ ......+.+.++|+|+.+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 4666 699999999999999999999998776532110 01344567788999887764
No 463
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.19 E-value=0.51 Score=45.48 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC---------Ccccc---cCHHHhhcCCCEEEEe--ccCC-hh
Q 043239 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV---------SYPFY---ANVSGLAADSDVLIVC--CALT-EE 212 (286)
Q Consensus 148 g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~---------~~~~~---~~l~e~l~~aDiV~~~--lp~~-~~ 212 (286)
+-+++|+|+|..|.++|+.|...|++|.++|....... +.... .+ .+.+.++|+|+.. +|.+ +.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCHH
Confidence 45899999999999999999999999999997543210 11111 12 2446689988775 2222 21
Q ss_pred hh-------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 043239 213 TH-------HMINK-DVM-TALGKEGVIINVGRGALIDEKELVHFLVRGS 253 (286)
Q Consensus 213 t~-------~~i~~-~~l-~~mk~g~ilvn~srg~~vd~~al~~al~~~~ 253 (286)
.. .++.+ +.+ ..++...+-|-=+.|......-+...|+..+
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 134 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG 134 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 11 12322 233 2233334445556888888888888887643
No 464
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.13 E-value=0.2 Score=46.31 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=32.5
Q ss_pred CCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 146 LGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 146 l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
++|++|.|.|. |-||+.+++.|...|++|++.+|+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 46789999994 99999999999999999999887654
No 465
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.10 E-value=1 Score=42.75 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=65.4
Q ss_pred CcccCCCCEEEEEcCC---h-------HHHHHHHHhccCCCEEEEECCCCCCCC----Cc-ccccCHHHhhcCCCEEEEe
Q 043239 142 LGSTLGGKRVGIVGLG---S-------IGSEVAKRLVPFGCSIAYTSRKKKPGV----SY-PFYANVSGLAADSDVLIVC 206 (286)
Q Consensus 142 ~~~~l~g~~vgIiG~G---~-------iG~~~A~~l~~~g~~V~~~~r~~~~~~----~~-~~~~~l~e~l~~aDiV~~~ 206 (286)
.++.+++.+|+++|+- . =...+.+.+...|.+|.+||+..+... +. ....++++.++++|+|++.
T Consensus 316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~ 395 (436)
T COG0677 316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIA 395 (436)
T ss_pred cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEE
Confidence 4567899999999974 3 245788999999999999999776532 21 1247889999999999988
Q ss_pred ccCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239 207 CALTEETHHMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~srg 237 (286)
+- . +....++.+.+... ..++||+ |+
T Consensus 396 tD-H-~~fk~id~~~i~~~--~~vivDt-rn 421 (436)
T COG0677 396 TD-H-SEFKEIDYEAIGKE--AKVIVDT-RN 421 (436)
T ss_pred ec-c-HHhhcCCHHHhccC--CcEEEEC-cc
Confidence 53 2 22224677777654 5688887 44
No 466
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.05 E-value=0.35 Score=42.73 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=33.9
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
+++++++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478899999985 89999999999999999999988754
No 467
>PRK06196 oxidoreductase; Provisional
Probab=93.01 E-value=0.19 Score=45.84 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=33.5
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
.+.|+++.|.|. |.||..+|+.|...|++|++.+|+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999996 88999999999999999999888754
No 468
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.00 E-value=0.42 Score=42.18 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=32.7
Q ss_pred cCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCCC
Q 043239 145 TLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRKK 181 (286)
Q Consensus 145 ~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~~ 181 (286)
++.||++.|.|.+ .||.++|+.|...|++|++.+|+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999986 699999999999999998887764
No 469
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=92.95 E-value=0.3 Score=44.86 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=57.5
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Cccc---cc--C-HHHhhcCCCEEEEeccCChhhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPF---YA--N-VSGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~---~~--~-l~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
.|.++.|.|.|.+|..+++.++.+|.+|++.+++.+... +... .. + ..+.-...|+++.+.+..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~----- 243 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS----- 243 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence 467999999999999999999999999988887654321 1110 11 1 112235679998887632
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 043239 216 MINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~sr 236 (286)
......++.++++..+++++.
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred chHHHHHHHhcCCCEEEEEec
Confidence 112456777788888887764
No 470
>PRK14852 hypothetical protein; Provisional
Probab=92.90 E-value=0.16 Score=53.30 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSR 179 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r 179 (286)
..|++++|+|+|+|.+|..+++.|...|. ++...|.
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~ 364 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF 364 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 35899999999999999999999999988 6666663
No 471
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.89 E-value=0.67 Score=44.02 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=58.5
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC-E------EEEE--CCCCCCCCC---------------cccccCHHHhhcCCCEE
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC-S------IAYT--SRKKKPGVS---------------YPFYANVSGLAADSDVL 203 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~-~------V~~~--~r~~~~~~~---------------~~~~~~l~e~l~~aDiV 203 (286)
.+|+|||. |.+|..+|-.+...|. . +..+ |+..+...+ .....+-.+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 48999999 9999999999876554 2 3334 665554321 01112345788999999
Q ss_pred EEeccCC--h-hhh--------hccc---HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239 204 IVCCALT--E-ETH--------HMIN---KDVMTALGKEGVIINVGRGALIDEKELVHF 248 (286)
Q Consensus 204 ~~~lp~~--~-~t~--------~~i~---~~~l~~mk~g~ilvn~srg~~vd~~al~~a 248 (286)
+++.-.. + +++ .++. ...-..-++.+++|.++ .++|.-+.+-+
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~ 181 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAM 181 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHH
Confidence 9974321 1 111 1111 11222234788999886 66666555543
No 472
>PRK08324 short chain dehydrogenase; Validated
Probab=92.88 E-value=0.17 Score=51.66 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=35.2
Q ss_pred ccCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239 144 STLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP 183 (286)
Q Consensus 144 ~~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~ 183 (286)
..+.|+++.|.| .|.||..+++.|...|++|++.+|+.+.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHH
Confidence 457899999999 5999999999999999999999987643
No 473
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.81 E-value=0.29 Score=45.75 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=57.5
Q ss_pred EEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC------Ccccc----c-CH----HHhh--cCCCEEEEeccCCh
Q 043239 150 RVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV------SYPFY----A-NV----SGLA--ADSDVLIVCCALTE 211 (286)
Q Consensus 150 ~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~------~~~~~----~-~l----~e~l--~~aDiV~~~lp~~~ 211 (286)
++.|+|.|.||...+..++.+|. +|++.|+++++.. +.... . +. .++- ..+|+++-|.. ++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~ 249 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP 249 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence 99999999999999999999997 6788888776532 11111 1 11 1222 24999999876 22
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239 212 ETHHMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~srg 237 (286)
. .-.+.+..++++..++.+|-.
T Consensus 250 ~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 P----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred H----HHHHHHHHhcCCCEEEEEecc
Confidence 2 124567778899888888744
No 474
>PRK06398 aldose dehydrogenase; Validated
Probab=92.76 E-value=0.53 Score=41.49 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=34.1
Q ss_pred cCCCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239 145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKP 183 (286)
Q Consensus 145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~ 183 (286)
++.|+++.|.| .|.||..+|+.|...|++|+..+|+...
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~ 42 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS 42 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 47899999998 4689999999999999999998887644
No 475
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.74 E-value=0.11 Score=44.72 Aligned_cols=37 Identities=38% Similarity=0.606 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCC
Q 043239 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRK 180 (286)
Q Consensus 144 ~~l~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~ 180 (286)
+.|++.+|.|+|+|.+|..+++.|...|. +++.+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45889999999999999999999999998 58777754
No 476
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.70 E-value=0.29 Score=42.51 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=34.1
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKP 183 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~ 183 (286)
++.++++.|+|. |.+|..+++.|...|++|++.+|+...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 367889999985 899999999999999999999997643
No 477
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.67 E-value=0.16 Score=46.54 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=53.3
Q ss_pred EEcCChHHHHHHHHhccCCC--EEEEECCCCCCCCC---------------cccccCHHHhhcCCCEEEEeccCCh---h
Q 043239 153 IVGLGSIGSEVAKRLVPFGC--SIAYTSRKKKPGVS---------------YPFYANVSGLAADSDVLIVCCALTE---E 212 (286)
Q Consensus 153 IiG~G~iG~~~A~~l~~~g~--~V~~~~r~~~~~~~---------------~~~~~~l~e~l~~aDiV~~~lp~~~---~ 212 (286)
|||.|.+|..+|..|...+. ++..+|...+...+ .....+-.+.+++||+|+++.-... .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 68999999999999987665 78999987654321 1111233578899999999754211 1
Q ss_pred hh--------hcccH--HHHhcCCCCcEEEEcCC
Q 043239 213 TH--------HMINK--DVMTALGKEGVIINVGR 236 (286)
Q Consensus 213 t~--------~~i~~--~~l~~mk~g~ilvn~sr 236 (286)
++ .++.+ ..+....|.+++++++.
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 11 11110 12333468899999863
No 478
>PRK08264 short chain dehydrogenase; Validated
Probab=92.67 E-value=0.24 Score=42.83 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=34.1
Q ss_pred cCCCCEEEEEc-CChHHHHHHHHhccCCC-EEEEECCCCCC
Q 043239 145 TLGGKRVGIVG-LGSIGSEVAKRLVPFGC-SIAYTSRKKKP 183 (286)
Q Consensus 145 ~l~g~~vgIiG-~G~iG~~~A~~l~~~g~-~V~~~~r~~~~ 183 (286)
++.++++.|+| .|.+|+.+|+.|...|+ +|+..+|+.++
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 46788999998 59999999999999999 99988887654
No 479
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=92.65 E-value=0.37 Score=43.88 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=45.1
Q ss_pred CCCEEEEEc-CChHHHHHHHHhccCCCEEEEECCCCCCCC-------------C-------cccccCHHHhhcCCCEEEE
Q 043239 147 GGKRVGIVG-LGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-------------S-------YPFYANVSGLAADSDVLIV 205 (286)
Q Consensus 147 ~g~~vgIiG-~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-------------~-------~~~~~~l~e~l~~aDiV~~ 205 (286)
.|++|.|.| .|.||+.+++.|...|++|.+..|+..... . .....+++++++.+|+|+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 578999998 699999999999999999987665543210 0 0112356778888998877
Q ss_pred ecc
Q 043239 206 CCA 208 (286)
Q Consensus 206 ~lp 208 (286)
+..
T Consensus 84 ~A~ 86 (322)
T PLN02986 84 TAS 86 (322)
T ss_pred eCC
Confidence 653
No 480
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=92.64 E-value=0.095 Score=46.92 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=66.6
Q ss_pred CEEEEEcCChHHHHHHHHhccCCC---EEEEECCCCCCCC---------------CcccccCHHHhhcCCCEEEEeccCC
Q 043239 149 KRVGIVGLGSIGSEVAKRLVPFGC---SIAYTSRKKKPGV---------------SYPFYANVSGLAADSDVLIVCCALT 210 (286)
Q Consensus 149 ~~vgIiG~G~iG~~~A~~l~~~g~---~V~~~~r~~~~~~---------------~~~~~~~l~e~l~~aDiV~~~lp~~ 210 (286)
..+.|+|.|...-......-+.-+ +|..|+|+.+.+. ....+.+++++++.+|||+.+++.+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 357899999998887775443322 7999999876432 2335678999999999999998755
Q ss_pred hhhhhcccHH---------------------HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 043239 211 EETHHMINKD---------------------VMTALGKEGVIINVGRGALIDEKELVHFLVRG 252 (286)
Q Consensus 211 ~~t~~~i~~~---------------------~l~~mk~g~ilvn~srg~~vd~~al~~al~~~ 252 (286)
+ .++-.+ --..|+.+.+|||.--+.+....+|++.+.+|
T Consensus 219 e---PilfgewlkpgthIdlVGsf~p~mhEcDdelIq~a~vfVDsre~aL~EsGell~~~~~g 278 (333)
T KOG3007|consen 219 E---PILFGEWLKPGTHIDLVGSFKPVMHECDDELIQSACVFVDSREHALLESGELLDSNIAG 278 (333)
T ss_pred C---ceeeeeeecCCceEeeeccCCchHHHHhHHHhhhheEEEecchHHhhhhhhhccccccC
Confidence 3 332111 11224556677776666666666666666655
No 481
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.53 E-value=0.3 Score=42.95 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=32.4
Q ss_pred cCCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCC
Q 043239 145 TLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRK 180 (286)
Q Consensus 145 ~l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~ 180 (286)
.+.||++.|.|.+ .||+++|+.|...|++|+..+|+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 3789999999985 79999999999999999988776
No 482
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.49 E-value=0.32 Score=44.80 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----CcccccCH-HHhhcCCCEEEEeccCChhhhhcccHH
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYPFYANV-SGLAADSDVLIVCCALTEETHHMINKD 220 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~~~~~l-~e~l~~aDiV~~~lp~~~~t~~~i~~~ 220 (286)
.|.+|.|.|.|.+|...++.++..|.+|++.+++.++.. ++...-+. ++.-...|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 478999999999999999999999999988887765422 22111111 11112367766654421 1 2 245
Q ss_pred HHhcCCCCcEEEEcCC
Q 043239 221 VMTALGKEGVIINVGR 236 (286)
Q Consensus 221 ~l~~mk~g~ilvn~sr 236 (286)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6778889988888764
No 483
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.48 E-value=0.3 Score=44.81 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=57.2
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCE-EEEECCCCCCCC-----Cccc---c--cC---HHHhhc--CCCEEEEeccCC
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGV-----SYPF---Y--AN---VSGLAA--DSDVLIVCCALT 210 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~-V~~~~r~~~~~~-----~~~~---~--~~---l~e~l~--~aDiV~~~lp~~ 210 (286)
.|.+|.|+|.|.+|...++.++.+|.+ |++.+++.++.. +... . .+ +.++.. ..|+|+-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 488999999999999999999999998 988887654321 1110 1 11 222332 478888776522
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCC
Q 043239 211 EETHHMINKDVMTALGKEGVIINVGRG 237 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~srg 237 (286)
. . ....+..++++..++.++..
T Consensus 243 -~---~-~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 243 -A---A-RRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred -H---H-HHHHHHHhhcCCEEEEEcCC
Confidence 1 1 13456778888888877643
No 484
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.47 E-value=0.21 Score=44.21 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=32.7
Q ss_pred cCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCC
Q 043239 145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKK 181 (286)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~ 181 (286)
.+.|+++.|.|. +.||.++|+.|...|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 478899999996 7999999999999999999888753
No 485
>PRK08862 short chain dehydrogenase; Provisional
Probab=92.42 E-value=0.16 Score=44.30 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=33.7
Q ss_pred cCCCCEEEEEcCCh-HHHHHHHHhccCCCEEEEECCCCCC
Q 043239 145 TLGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKKKP 183 (286)
Q Consensus 145 ~l~g~~vgIiG~G~-iG~~~A~~l~~~g~~V~~~~r~~~~ 183 (286)
+++|+++.|.|.+. ||.++|+.|...|++|...+|+.+.
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~ 41 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSA 41 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 46889999999765 9999999999999999999887543
No 486
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.41 E-value=0.25 Score=43.98 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCC---hHHHHHHHHhccCCCEEEEECCC
Q 043239 146 LGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYTSRK 180 (286)
Q Consensus 146 l~g~~vgIiG~G---~iG~~~A~~l~~~g~~V~~~~r~ 180 (286)
+.|+++.|.|.+ .||.++|+.|...|++|++.+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 688999999987 59999999999999999887775
No 487
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.18 Score=43.71 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=33.1
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
.+.++++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467899999985 99999999999999999998887643
No 488
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.31 E-value=0.73 Score=42.85 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=57.2
Q ss_pred CEEEEEc-CChHHHHHHHHhccCC-CEEEEECCCC-CCCC------Ccc-----c--ccCHHHh-hcCCCEEEEeccCCh
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFG-CSIAYTSRKK-KPGV------SYP-----F--YANVSGL-AADSDVLIVCCALTE 211 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~~r~~-~~~~------~~~-----~--~~~l~e~-l~~aDiV~~~lp~~~ 211 (286)
.+|+|+| -|--|.++.++|...- .++..++.+. .... ... . ..+.+++ ..+||+|++|+|...
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence 5899998 5889999999999864 3665444333 2111 011 0 1123333 456999999999653
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 043239 212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHF 248 (286)
Q Consensus 212 ~t~~~i~~~~l~~mk~g~ilvn~srg~~vd~~al~~a 248 (286)
+ ..++ .+. +..|..+||.|-.--++..++++.
T Consensus 83 s-~~~v-~~l---~~~g~~VIDLSadfR~~d~~~ye~ 114 (349)
T COG0002 83 S-AELV-PEL---LEAGCKVIDLSADFRLKDPEVYEK 114 (349)
T ss_pred H-HHHH-HHH---HhCCCeEEECCcccccCCHHHHHH
Confidence 3 2222 122 245777999997766665555543
No 489
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=92.30 E-value=0.47 Score=44.22 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=48.7
Q ss_pred CEEEEEc-CChHHHHHHHHhccCC-CEEEEE-CCCCCCCC------C------c----c--cccCH-HHhhcCCCEEEEe
Q 043239 149 KRVGIVG-LGSIGSEVAKRLVPFG-CSIAYT-SRKKKPGV------S------Y----P--FYANV-SGLAADSDVLIVC 206 (286)
Q Consensus 149 ~~vgIiG-~G~iG~~~A~~l~~~g-~~V~~~-~r~~~~~~------~------~----~--~~~~l-~e~l~~aDiV~~~ 206 (286)
++|+|+| .|.+|+.+++.|.... +++... +++..... . . . .+.++ .+.+.++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 4799999 5999999999998765 577654 43321100 0 0 0 01111 2345889999999
Q ss_pred ccCChhhhhcccHHHHhcCCCCcEEEEcC
Q 043239 207 CALTEETHHMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 207 lp~~~~t~~~i~~~~l~~mk~g~ilvn~s 235 (286)
+|..-. ..+. ... ++.|..+||.|
T Consensus 81 ~p~~~s-~~~~-~~~---~~~G~~VIDls 104 (341)
T TIGR00978 81 LPSEVA-EEVE-PKL---AEAGKPVFSNA 104 (341)
T ss_pred CCHHHH-HHHH-HHH---HHCCCEEEECC
Confidence 985422 2222 222 24677777765
No 490
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.29 E-value=0.47 Score=44.66 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=53.3
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCC------CCCccc---ccC---HHHhhcCCCEEEEeccCChhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP------GVSYPF---YAN---VSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~------~~~~~~---~~~---l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
.|.+|.|.|.|.+|...++.++.+|.+|++.+++.++ ..+... ..+ +.+.....|+|+-++.....
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~-- 255 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA-- 255 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHH--
Confidence 5889999999999999999999999998887665332 112211 111 22333457888887642111
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q 043239 215 HMINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~s 235 (286)
+ ...++.++++..++.++
T Consensus 256 --~-~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 256 --L-LPLFSLLKVSGKLVALG 273 (375)
T ss_pred --H-HHHHHhhcCCCEEEEEc
Confidence 1 23455566676666654
No 491
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.26 E-value=0.36 Score=45.56 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=47.5
Q ss_pred CEEEEEcC-ChHHHHHHH-HhccCCCE---EEEECCCC--CCCCCc-----ccc--cCHHHhhcCCCEEEEeccCChhhh
Q 043239 149 KRVGIVGL-GSIGSEVAK-RLVPFGCS---IAYTSRKK--KPGVSY-----PFY--ANVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~-~l~~~g~~---V~~~~r~~--~~~~~~-----~~~--~~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
.+|||||. |.+|+.+.+ .|....+. +..++.+. .+...+ ... .+. +.++++|+++.++|.. .+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HHH
Confidence 47999995 999999998 55555554 55554432 111111 111 122 3458899999999843 222
Q ss_pred hcccHHHHhc-CCCC--cEEEEcC
Q 043239 215 HMINKDVMTA-LGKE--GVIINVG 235 (286)
Q Consensus 215 ~~i~~~~l~~-mk~g--~ilvn~s 235 (286)
+..+. .+.| +++||.|
T Consensus 80 -----~~~~~~~~aG~~~~VID~S 98 (369)
T PRK06598 80 -----EVYPKLRAAGWQGYWIDAA 98 (369)
T ss_pred -----HHHHHHHhCCCCeEEEECC
Confidence 22222 2456 6788887
No 492
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.23 E-value=0.22 Score=43.35 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=33.0
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKK 181 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~ 181 (286)
++.|+++.|.|. |.||..+|+.|...|++|++.+|+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 368999999996 7999999999999999999888754
No 493
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.22 E-value=0.68 Score=40.93 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=32.4
Q ss_pred cCCCCEEEEEcC---ChHHHHHHHHhccCCCEEEEECCCC
Q 043239 145 TLGGKRVGIVGL---GSIGSEVAKRLVPFGCSIAYTSRKK 181 (286)
Q Consensus 145 ~l~g~~vgIiG~---G~iG~~~A~~l~~~g~~V~~~~r~~ 181 (286)
.+.||++.|.|. +.||.++|+.|...|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~ 43 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGE 43 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcc
Confidence 478999999997 4899999999999999998877653
No 494
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.21 E-value=0.41 Score=44.61 Aligned_cols=81 Identities=9% Similarity=0.139 Sum_probs=48.3
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCC---EEEEE-CCCCCC-C---CCc-cccc--CHHHhhcCCCEEEEeccCChhhhhc
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGC---SIAYT-SRKKKP-G---VSY-PFYA--NVSGLAADSDVLIVCCALTEETHHM 216 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~---~V~~~-~r~~~~-~---~~~-~~~~--~l~e~l~~aDiV~~~lp~~~~t~~~ 216 (286)
.+|+|+|. |.+|+.+.+.|...++ ++... +++... . .+. ..+. +..+ ++++|++++++|. .....+
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~-~~s~~~ 82 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGA-AVSRSF 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCH-HHHHHH
Confidence 58999995 9999999999996544 33333 222111 0 010 1111 2223 5889999999993 233322
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 043239 217 INKDVMTALGKEGVIINVG 235 (286)
Q Consensus 217 i~~~~l~~mk~g~ilvn~s 235 (286)
+ ... .+.|..+||.|
T Consensus 83 v-~~~---~~~G~~VIDlS 97 (336)
T PRK05671 83 A-EKA---RAAGCSVIDLS 97 (336)
T ss_pred H-HHH---HHCCCeEEECc
Confidence 2 122 24688899998
No 495
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.20 E-value=0.37 Score=42.70 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=32.8
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCC
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKK 182 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~ 182 (286)
++.|+++.|.|. |.||+.+++.|...|++|.+.+|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~ 40 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA 40 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 367889999985 88999999999999999998887653
No 496
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=92.18 E-value=0.33 Score=44.02 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=40.7
Q ss_pred CEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC-CcccccCHHHhhc--CCCEEEEec
Q 043239 149 KRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV-SYPFYANVSGLAA--DSDVLIVCC 207 (286)
Q Consensus 149 ~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-~~~~~~~l~e~l~--~aDiV~~~l 207 (286)
|+|.|.|. |-||+.+++.|...| +|++.+|...... .......+.++++ +.|+|+-+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A 62 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAA 62 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccccccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 47899996 999999999999888 7888887643221 1222334556666 479887654
No 497
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.03 E-value=0.31 Score=45.58 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=56.3
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCC-EEEEECCCCCCCC-----Cccc---c--cCHHH----hhc-CCCEEEEeccCC
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGC-SIAYTSRKKKPGV-----SYPF---Y--ANVSG----LAA-DSDVLIVCCALT 210 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~-~V~~~~r~~~~~~-----~~~~---~--~~l~e----~l~-~aDiV~~~lp~~ 210 (286)
.|.+|.|.|.|.+|...++.++..|+ +|++.++++++.. ++.. . .++.+ +.. ..|+|+-++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 47899999999999999999999999 6888887654421 2111 1 12211 211 479998876422
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q 043239 211 EETHHMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 211 ~~t~~~i~~~~l~~mk~g~ilvn~sr 236 (286)
.+ -...++.++++..++.++-
T Consensus 271 -~~----~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 271 -PA----LETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -HH----HHHHHHHHhcCCEEEEEcc
Confidence 11 1345667888888888763
No 498
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=92.02 E-value=0.41 Score=44.54 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=56.3
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCC------CCccc---cc---CHHHhhcCCCEEEEeccCChhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------VSYPF---YA---NVSGLAADSDVLIVCCALTEETH 214 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~------~~~~~---~~---~l~e~l~~aDiV~~~lp~~~~t~ 214 (286)
.|.++.|.|.|.+|..+++.++..|.+|++.+++.++. .+... .. .+.+.....|+++-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 57899999999999999999999999887776554321 12111 11 122333457988887753211
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q 043239 215 HMINKDVMTALGKEGVIINVGR 236 (286)
Q Consensus 215 ~~i~~~~l~~mk~g~ilvn~sr 236 (286)
....++.++++..++.++.
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---HHHHHHHhccCCEEEEECC
Confidence 1345677888888888763
No 499
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=92.01 E-value=0.21 Score=47.73 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=46.3
Q ss_pred cCCCCEEEEEcC-ChHHHHHHHHhccCCCEEEEECCCCCCCC--------Cc-------ccccCHHHhhcCCCEEEEec
Q 043239 145 TLGGKRVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRKKKPGV--------SY-------PFYANVSGLAADSDVLIVCC 207 (286)
Q Consensus 145 ~l~g~~vgIiG~-G~iG~~~A~~l~~~g~~V~~~~r~~~~~~--------~~-------~~~~~l~e~l~~aDiV~~~l 207 (286)
+++|+++.|.|. |.||+++++.|...|++|.+.+|+.+... .. ....++.+.+.+.|+++.+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 578999999986 89999999999999999998887653211 00 01123455678899998764
No 500
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.98 E-value=0.66 Score=42.16 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=56.2
Q ss_pred CCCEEEEEcCChHHHHHHHHhccCCCEEEEECCCCCCCC-----Ccc---ccc--CH-HHhhcCCCEEEEeccCChhhhh
Q 043239 147 GGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV-----SYP---FYA--NV-SGLAADSDVLIVCCALTEETHH 215 (286)
Q Consensus 147 ~g~~vgIiG~G~iG~~~A~~l~~~g~~V~~~~r~~~~~~-----~~~---~~~--~l-~e~l~~aDiV~~~lp~~~~t~~ 215 (286)
.|.+|.|.|.|.+|+.+++.++..|++|++.+++.++.. +.. ... +. ...-...|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 467999999999999999999999999988887664321 111 000 11 111235788887754211
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 043239 216 MINKDVMTALGKEGVIINVG 235 (286)
Q Consensus 216 ~i~~~~l~~mk~g~ilvn~s 235 (286)
...+.+..|+++..+++++
T Consensus 238 -~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -HHHHHHHhcccCCEEEEEC
Confidence 2245677888888888875
Done!