RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043239
(286 letters)
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 276 bits (709), Expect = 1e-92
Identities = 102/234 (43%), Positives = 147/234 (62%), Gaps = 3/234 (1%)
Query: 21 LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
L +RF L + + FL+ A S+RA++ + ++ + LP LEIV + G
Sbjct: 40 LDKRFKLFR--YWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG 97
Query: 81 IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140
+D VDL +C +G+ VTN + ++D AD +GL++ VLRR+ D++VR G W G +
Sbjct: 98 LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FGDF 156
Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
L + GKRVGI+GLG IG VA+R F C I+Y SR KKP +Y +Y +V LA++S
Sbjct: 157 KLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNS 216
Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
D+L+V C LT ET H+IN++V+ ALG +GV+IN+GRG +DE ELV LV G L
Sbjct: 217 DILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRL 270
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 272 bits (699), Expect = 3e-91
Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 3/234 (1%)
Query: 21 LSERFTLLDPLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG 80
L +++ + L S+RA+ G + L+++ + LP+L I+ + G
Sbjct: 47 LQRNYSVHRLY---QAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVG 103
Query: 81 IDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAY 140
D VDL RRR I VT ++D AD + L++ VLRRV DR VR G W
Sbjct: 104 TDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQL 163
Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
PLG + GKR+G++GLG IG +A R FG S+ Y +R GV + + + LA DS
Sbjct: 164 PLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDS 223
Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
DVL VC A + T ++++ ++ ALG EG+++NV RG ++DE L+ L G++
Sbjct: 224 DVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTI 277
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 211 bits (539), Expect = 5e-67
Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 10/241 (4%)
Query: 21 LSERFTLLDPLLHSADS--THSFLSRHASSVRAILCLGPSPLTSDTLS-LLPALEIVVGS 77
L +RF D ++ D+ T S ++ A + +T++ + L P L+ +
Sbjct: 45 LRQRF---DLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL 101
Query: 78 TAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD- 136
+ G DH+D+ R GI V + + S+ A+ + L+++ RR DR VR+G WP
Sbjct: 102 SVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGW 161
Query: 137 HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVS---YPFYANV 193
LG L G+R+GI G+G IG +A R FG +I Y +R + ++ +
Sbjct: 162 GPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTL 221
Query: 194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGS 253
L SD+ ++ E ++ D + + + V+IN+ RG LI++ L+ L
Sbjct: 222 DSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKH 281
Query: 254 L 254
L
Sbjct: 282 L 282
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 196 bits (501), Expect = 7e-62
Identities = 42/214 (19%), Positives = 92/214 (42%), Gaps = 5/214 (2%)
Query: 41 FLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
F + + S +T++ L+ +P L+ + TAG+DH+ + + V
Sbjct: 21 FKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPH-VTVAGNA 79
Query: 101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIG 160
+ ++ A++ + LL+ +R+ ++ G + + G++V ++GLG IG
Sbjct: 80 GSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE---IPLIQGEKVAVLGLGEIG 136
Query: 161 SEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKD 220
+ V K L G + SR K G + F ++ ++ + L + T ++
Sbjct: 137 TRVGKILAALGAQVRGFSRTPKEGP-WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQ 195
Query: 221 VMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
+ + ++ V +NVGR ++D ++ L
Sbjct: 196 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ 229
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 193 bits (493), Expect = 3e-60
Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 8/219 (3%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
L + V A++ + + + P L IV G D++D++E +RGI VTN +
Sbjct: 39 LLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPD 98
Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGA-----YPLGSTLGGKRVGIVGL 156
++ AD LL+ R V DRFVR+G W G + LG + GK +GI+GL
Sbjct: 99 VLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGL 158
Query: 157 GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEET 213
G IG +AKR F I Y SR +K V + + L +SD +++ LT ET
Sbjct: 159 GRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRET 218
Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
+H+IN++ + + K ++IN+ RG ++D LV L G
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEG 257
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 192 bits (490), Expect = 5e-60
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 5/210 (2%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
L + ++ + ++ + L+++ + G+DHVDL+ R RGI VT+
Sbjct: 37 LLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPG 96
Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSIG 160
+E AD + LL+ V RRV + R+GLW H LG L G +G+VG+G IG
Sbjct: 97 VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIG 156
Query: 161 SEVAKRLVPFGCSIAYTSRKKKP-GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
VAKR + FG + Y +R KP + ++ L ++DV+ + LT ETH ++N+
Sbjct: 157 QAVAKRALAFGMRVVYHARTPKPLPYP---FLSLEELLKEADVVSLHTPLTPETHRLLNR 213
Query: 220 DVMTALGKEGVIINVGRGALIDEKELVHFL 249
+ + A+ + +++N RGAL+D + LV L
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEAL 243
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 186 bits (476), Expect = 7e-58
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 11/220 (5%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTLSLLPA-LEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
+ A SV A+L + + +P ++ + + G DH+DL C+ RGI V NA
Sbjct: 38 MIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAP 97
Query: 101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSI 159
+ + A+ + LL+ RR ++ +R WP +G L K +GI G GSI
Sbjct: 98 HGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSI 157
Query: 160 GSEVAKRLVPFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEE 212
G +AKR F I Y + ++ + ++ L + S + T E
Sbjct: 158 GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATF--HDSLDSLLSVSQFFSLNAPSTPE 215
Query: 213 THHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
T + NK + +L + +++N RG L+D + +V L G
Sbjct: 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 255
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 187 bits (478), Expect = 8e-58
Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 19/253 (7%)
Query: 21 LSERFTLLDPLLHS-ADSTHSFLSRHASSVRAILCLGPS------PLTSDTLSLLPA-LE 72
++F ++ L + + + AI+ L P +D +S LP+ L+
Sbjct: 23 FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLK 82
Query: 73 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNG 132
+ + AG D +DL RG+ N+ A +D + L++ V R S +R R G
Sbjct: 83 VFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTG 142
Query: 133 LWP-----DHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLV-PFGCSIAYTSRKKKP--- 183
G +G VGLG+I E+A++ V G + Y
Sbjct: 143 DPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET 202
Query: 184 --GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
+ ++ LA SD + V + THH+I++ A+ I+N RG +I
Sbjct: 203 EKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVIS 262
Query: 242 EKELVHFLVRGSL 254
+ L+ L G L
Sbjct: 263 QDALIAALKSGKL 275
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 186 bits (475), Expect = 1e-57
Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 6/217 (2%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTL-SLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAG 100
L R + +LCL + L + L+++ + GIDH+ L E ++RGI V
Sbjct: 47 LERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTP 106
Query: 101 NAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPD-HGAYPLGSTLGGKRVGIVGLGSI 159
+ ++ A+ V LL+ RR+ V+NG W + G L VGI+GLG I
Sbjct: 107 DVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRI 166
Query: 160 GSEVAKRLVPFGCS-IAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHH 215
G +A+RL PFG YT R+ +P + F + + LAA SD ++V C+LT T
Sbjct: 167 GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEG 226
Query: 216 MINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
+ NKD + + V IN+ RG ++++ +L L G
Sbjct: 227 LCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASG 263
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 183 bits (468), Expect = 1e-56
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 10/220 (4%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
+ R +A++ P + +D L P L ++ + G D+ D+ C RG+ +T +
Sbjct: 39 ILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD 98
Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGS 161
+ A+ +GL V + R + + D FVR+G + G+ L VG +G+G+IG
Sbjct: 99 LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGL 158
Query: 162 EVAKRLVPFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETH 214
+A RL +G ++ Y K G+ S L A SD +++ L +T
Sbjct: 159 AMADRLQGWGATLQYHEAKALDTQTEQRLGLR---QVACSELFASSDFILLALPLNADTL 215
Query: 215 HMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
H++N +++ + +++N RG+++DE ++ L RG L
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQL 255
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 174 bits (442), Expect = 1e-52
Identities = 41/206 (19%), Positives = 87/206 (42%), Gaps = 5/206 (2%)
Query: 52 ILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYV 111
++ L + L+ V +AG+D++ L+ + G++V N ++ ++ V
Sbjct: 43 VMYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESV 102
Query: 112 VGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFG 171
+ ++ V+R + R STL G+++ I G G IG +A + G
Sbjct: 103 LAAMLSVVRGYHAAWLNQRGARQWALPM--TTSTLTGQQLLIYGTGQIGQSLAAKASALG 160
Query: 172 CSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKE 228
+ + P + + + A ++ ++ LT THH+ + ++ ++
Sbjct: 161 MHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQ 220
Query: 229 GVIINVGRGALIDEKELVHFLVRGSL 254
++IN+GRG +D L+ L L
Sbjct: 221 PMLINIGRGPAVDTTALMTALDHHQL 246
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 172 bits (437), Expect = 3e-51
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 11/208 (5%)
Query: 55 LGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGL 114
P+ LT + ++ L++ + + G DHVDLQ R + V S A++VV +
Sbjct: 98 FWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMM 157
Query: 115 LVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
++ ++R + R G W L VG V G IG V +RL PF +
Sbjct: 158 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 217
Query: 175 AYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK 227
YT R + P +++ +A + DV+ + C L ET HMIN + + L K
Sbjct: 218 HYTDRHRLPESVEKELNLTW--HATREDMYPVCDVVTLNCPLHPETEHMINDETL-KLFK 274
Query: 228 EGV-IINVGRGALIDEKELVHFLVRGSL 254
G I+N RG L D + L G L
Sbjct: 275 RGAYIVNTARGKLCDRDAVARALESGRL 302
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 166 bits (424), Expect = 5e-50
Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 14/221 (6%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGN 101
L I+ + +T + L L+++ +AG D++DL+E +RGI VT
Sbjct: 36 LKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG 95
Query: 102 AFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW----PDHGAYPLGSTLGGKRVGIVGLG 157
SE A++ VGL+++++R++ D+F+R G W + +L GK+VGI+G+G
Sbjct: 96 LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG 155
Query: 158 SIGSEVAKRLVPFGCSIAYTSRKKKP------GVSYPFYANVSGLAADSDVLIVCCALTE 211
+IG +A+RL+PFG + Y SR +K Y ++ L SD++I+ LT
Sbjct: 156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKAR---YMDIDELLEKSDIVILALPLTR 212
Query: 212 ETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
+T+H+IN++ + + ++N+GRGAL+DEK + + +G
Sbjct: 213 DTYHIINEERV-KKLEGKYLVNIGRGALVDEKAVTEAIKQG 252
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 162 bits (412), Expect = 3e-48
Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 5/212 (2%)
Query: 46 ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSE 105
I LT + LS +P L+++ + G DH+DL C+++GILVT+ E
Sbjct: 40 LKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPE 99
Query: 106 DGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAK 165
A++ +++ +++R+ I+ V+ + L L +G++G G IGS VA
Sbjct: 100 SVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAM 158
Query: 166 RLVPFGCSIAYTSRKKKPGVSYPF--YANVSGLAADSDVLIVCCALTEETHHMINKDVMT 223
+ FG + K+ + Y ++ L +SDV+ + T+ETHHMIN++ +
Sbjct: 159 YGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERI- 217
Query: 224 ALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
+L K+GV +IN RG ++D L RG
Sbjct: 218 SLMKDGVYLINTARGKVVDTDALYRAYQRGKF 249
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 158 bits (401), Expect = 4e-47
Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 7/195 (3%)
Query: 59 PLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV 118
+ D L +++ +AG+DH+D+ +L +NAG A+S A++ LL+
Sbjct: 38 QVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAH 96
Query: 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS 178
+ + + ++ G++ + L GK +GI+G G IG VA FG + +
Sbjct: 97 AKNILENNELMKAGIFRQS----PTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYT 152
Query: 179 RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-IINVGRG 237
R + + L SD +++ LT++T M+N ++ A ++ + I+NV R
Sbjct: 153 RSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL-ANARKNLTIVNVARA 211
Query: 238 ALIDEKELVHFLVRG 252
++ + +++ FL
Sbjct: 212 DVVSKPDMIGFLKER 226
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 153 bits (389), Expect = 1e-44
Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 21/233 (9%)
Query: 36 DSTHSFLSRHASSVRAILC--LGPSPLTSDTLSLLPALEIVVGSTAGI--DHVDLQECRR 91
+ L +H + ++ P+ +T++ + L++++ TAGI DH+DLQ
Sbjct: 50 EGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLL--TAGIGSDHIDLQAAAA 107
Query: 92 RGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGK 149
G+ V N S A+ + ++ ++R V G W G L GK
Sbjct: 108 AGLTVAEVTGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGK 165
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDV 202
+G VG G IG + +RL PFGC++ Y R + G + +++ + DV
Sbjct: 166 TIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF--VEDLNEMLPKCDV 223
Query: 203 LIVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
+++ LTE+T M NK+++ K+GV I+N RGA+++ + +V + G +
Sbjct: 224 IVINMPLTEKTRGMFNKELI-GKLKKGVLIVNNARGAIMERQAVVDAVESGHI 275
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 153 bits (389), Expect = 1e-44
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 15/230 (6%)
Query: 35 ADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI 94
A ST + + L LT + L AL I+V +G D++D++ GI
Sbjct: 50 AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGI 109
Query: 95 LVTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLW-----PDHGAYPLGSTLGGK 149
V N A E+ AD + ++++ RR + + + +R G + + G+
Sbjct: 110 AVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGE 169
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP------GVSYPFYANVSGLAADSDVL 203
+GI+GLG +G VA R FG ++ + G+ + + L SD +
Sbjct: 170 TLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQR--VSTLQDLLFHSDCV 227
Query: 204 IVCCALTEETHHMINKDVMTALGKEGV-IINVGRGALIDEKELVHFLVRG 252
+ C L E HH+IN + ++G ++N RG L+DEK L L G
Sbjct: 228 TLHCGLNEHNHHLINDFTV-KQMRQGAFLVNTARGGLVDEKALAQALKEG 276
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 149 bits (378), Expect = 7e-43
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 57 PSPLTSDTLSLLPALEIVVGSTAGI--DHVDLQECRRRG--ILVTNA--GNAFSEDGADY 110
P+ +T + + L++VV AG+ DH+DL + G I V N S A++
Sbjct: 71 PAYITKERIDKAKKLKLVV--VAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEH 126
Query: 111 VVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
VV ++ ++R + N W + GK + +G G IG V +RLVPF
Sbjct: 127 VVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPF 186
Query: 171 GCS-IAYT-------SRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVM 222
+ Y ++K G N+ L A +D++ V L T +INK+++
Sbjct: 187 NPKELLYYDYQALPKDAEEKVGARR--VENIEELVAQADIVTVNAPLHAGTKGLINKELL 244
Query: 223 TALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
+ K+G ++N RGA+ +++ L G L
Sbjct: 245 -SKFKKGAWLVNTARGAICVAEDVAAALESGQL 276
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 147 bits (373), Expect = 1e-42
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 10/204 (4%)
Query: 55 LGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGL 114
+ L+ L + AG+D + L RR +TN F ++YV G
Sbjct: 52 MAEPARAKPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGH 110
Query: 115 LVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
L+ ++R++ + LW H L G+ + I+G GSIG +A FG +
Sbjct: 111 LLSLMRQLPLYREQQKQRLWQSHPYQGLK----GRTLLILGTGSIGQHIAHTGKHFGMKV 166
Query: 175 AYTSR--KKKPGVS--YPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230
SR +++ G Y ++ + A +DV++ T ETHH+ +
Sbjct: 167 LGVSRSGRERAGFDQVYQL-PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAI 225
Query: 231 IINVGRGALIDEKELVHFLVRGSL 254
+ NVGRG I+E +L+ L G L
Sbjct: 226 LFNVGRGNAINEGDLLTALRTGKL 249
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 147 bits (373), Expect = 2e-42
Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 14/217 (6%)
Query: 46 ASSVRAILCLGPSPLTSDTLSLLPALEI-VVGS-TAGIDHVDLQECRRRGILVTNAGNAF 103
A ++ ++TL L I + G+D++D+ + + G +TN
Sbjct: 44 AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYS 103
Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEV 163
A++ +LR+ ++D V +G + + VG+VG G IG
Sbjct: 104 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVF 161
Query: 164 AKRLVPFGCS-IAY----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMIN 218
+ + FG I Y +K G + ++ L +DV+ + HMIN
Sbjct: 162 MQIMEGFGAKVITYDIFRNPELEKKGY---YVDSLDDLYKQADVISLHVPDVPANVHMIN 218
Query: 219 KDVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
+ + A K+ V I+NV RG L+D ++ L G +
Sbjct: 219 DESI-AKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKI 254
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 146 bits (372), Expect = 2e-42
Identities = 39/216 (18%), Positives = 83/216 (38%), Gaps = 12/216 (5%)
Query: 46 ASSVRAILCLGPSPLTSDTLSLLPALEI-VVGS-TAGIDHVDLQECRRRGILVTNAGNAF 103
A+ A++ G L + L + + + TAG DH+D + + G +
Sbjct: 43 AAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYS 102
Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEV 163
A+ V + +LR + + + VG+VGLG IG
Sbjct: 103 PNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM-FSKEVRNCTVGVVGLGRIGRVA 161
Query: 164 AKRLVPFGCSI----AYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
A+ G ++ + + + + ++ + SD++ + +E ++ +
Sbjct: 162 AQIFHGMGATVIGEDVFEIKGIEDYCT---QVSLDEVLEKSDIITIHAPYIKENGAVVTR 218
Query: 220 DVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
D + K+G ++N RG L+D + ++ + G L
Sbjct: 219 DFL-KKMKDGAILVNCARGQLVDTEAVIEAVESGKL 253
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 146 bits (370), Expect = 5e-42
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 12/216 (5%)
Query: 46 ASSVRAILCLGPSPLTSDTLSLLPALEI-VVGS-TAGIDHVDLQECRRRGILVTNAGNAF 103
A I L +P + + A I + G D++D+ ++ GI ++N
Sbjct: 42 AKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYS 101
Query: 104 SEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEV 163
A++ + + +LR + + ++ G + G + +G LG + VG++G G IG
Sbjct: 102 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVA 160
Query: 164 AKRLVPFGCSI----AYTSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
K FG + Y + P Y ++ L SDV+ + E+ H+IN+
Sbjct: 161 IKLFKGFGAKVIAYDPYPMKGDHPDFD---YVSLEDLFKQSDVIDLHVPGIEQNTHIINE 217
Query: 220 DVMTALGKEGV-IINVGRGALIDEKELVHFLVRGSL 254
L K G +IN R LID + ++ L G L
Sbjct: 218 AAF-NLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 140 bits (356), Expect = 3e-40
Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 51 AILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADY 110
AI+ +T + P L+++ + G+D++D++ + +GI V NA A S A+
Sbjct: 47 AIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAEL 106
Query: 111 VVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPF 170
VGL+ V R+++ DR +R G+W +G L GK +GI+G G IG +VAK
Sbjct: 107 AVGLMFSVARKIAFADRKMREGVW-AKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANAL 164
Query: 171 GCS-IAY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTA 224
G + + Y R K+ + ++ L +SDV+ + L E T+H+IN++ +
Sbjct: 165 GMNILLYDPYPNEERAKEVNGK---FVDLETLLKESDVVTIHVPLVESTYHLINEERL-K 220
Query: 225 LGKEGV-IINVGRGALIDEKELVHFLVRG 252
L K+ +IN RG ++D LV L G
Sbjct: 221 LMKKTAILINTSRGPVVDTNALVKALKEG 249
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 140 bits (354), Expect = 2e-39
Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 59 PLTSDTLSLLPALEIV----VGSTAGIDHVDLQECRRRGILVTNA-GNAFSEDGADYVVG 113
+T L LP L+I+ S H+DL+ C +G++V G+ + A+
Sbjct: 60 RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVAP--AELTWA 117
Query: 114 LLVDVLRRVSSIDRFVRNGLW--------PDHGAYPLGSTLGGKRVGIVGLGSIGSEVAK 165
L++ RR+ +++G W + +G L G+ +GI G G IG VA
Sbjct: 118 LVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAG 177
Query: 166 RLVPFGCS-IAYTS-----RKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINK 219
FG + + + R + G + + L SDVL V L +ET +I
Sbjct: 178 YGRAFGMNVLVWGRENSKERARADGFAV--AESKDALFEQSDVLSVHLRLNDETRSIITV 235
Query: 220 DVMTALGKEGV-IINVGRGALIDEKELVHFLVRG 252
+ K +N R L++E +V L RG
Sbjct: 236 ADL-TRMKPTALFVNTSRAELVEENGMVTALNRG 268
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 139 bits (353), Expect = 4e-38
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 15/219 (6%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA-- 99
L A+L + + ++ L+ P L+IV + G+D+VD+ RG+LV NA
Sbjct: 38 LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPT 97
Query: 100 GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSI 159
N S A++ + LL+ R++ + D +R W ++ G+ + GK VG+VGLG I
Sbjct: 98 SNIHS--AAEHALALLLAASRQIPAADASLREHTW-KRSSF-SGTEIFGKTVGVVGLGRI 153
Query: 160 GSEVAKRLVPFGCS-IAY-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEET 213
G VA+R+ FG +AY +R + G+ ++ L A +D + V T ET
Sbjct: 154 GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL---LSLDDLLARADFISVHLPKTPET 210
Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRG 252
+I+K+ + +I+N RG L+DE L + G
Sbjct: 211 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 249
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 133 bits (338), Expect = 2e-37
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 59 PLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLV 116
+T+D ++ L++V + G+D+VDL+ R+GILV N GN+ S A+ G+++
Sbjct: 78 KVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS--AAELTCGMIM 135
Query: 117 DVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IA 175
+ R++ +++G W + + +G+ L GK +GI+GLG IG EVA R+ FG I
Sbjct: 136 CLARQIPQATASMKDGKW-ERKKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIG 193
Query: 176 Y-----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV 230
Y GV + + D + V L T ++N + A K+GV
Sbjct: 194 YDPIISPEVSASFGVQQ---LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGV 249
Query: 231 -IINVGRGALIDEKELVHFLVRG 252
++N RG ++DE L+ L G
Sbjct: 250 RVVNCARGGIVDEGALLRALQSG 272
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 132 bits (335), Expect = 5e-37
Identities = 47/221 (21%), Positives = 78/221 (35%), Gaps = 23/221 (10%)
Query: 46 ASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGI------LVTNA 99
+ L P + L+ V AG+D + + + L
Sbjct: 39 NNPADYALVWQPPVE----MLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLE 94
Query: 100 GNAFSEDGADYVVGLLVDVLRRVSSIDRFVRN---GLWPDHGAYPLGSTLGGKRVGIVGL 156
+Y V ++ RR D + LW Y VGI+G
Sbjct: 95 DTGMGLQMQEYAVSQVLHWFRR---FDDYQALKNQALWKPLPEYTRE----EFSVGIMGA 147
Query: 157 GSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLA---ADSDVLIVCCALTEET 213
G +G++VA+ L +G + SR +K Y L + VLI T +T
Sbjct: 148 GVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQT 207
Query: 214 HHMINKDVMTALGKEGVIINVGRGALIDEKELVHFLVRGSL 254
+IN +++ L ++N+ RG + E +L+ L G L
Sbjct: 208 VGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKL 248
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 129 bits (326), Expect = 1e-35
Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 59 PLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYVVGLLVDV 118
+T D + L+I+ + G+D++D +E +R I V A A ++ + +GL++
Sbjct: 57 KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAA 116
Query: 119 LRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY- 176
R++ + ++G++ G L GK +GIVG G IG++V G +AY
Sbjct: 117 ARKMYTSMALAKSGIFKKI----EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYD 172
Query: 177 ----TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-I 231
+ +K ++ L +SDV+ + ++++ +I+ L K+ V I
Sbjct: 173 ILDIREKAEKINAKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQF-ELMKDNVII 228
Query: 232 INVGRGALIDEKELVHFLVRG 252
+N R ++ K L+ ++ +G
Sbjct: 229 VNTSRAVAVNGKALLDYIKKG 249
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 125 bits (317), Expect = 6e-34
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 35/196 (17%)
Query: 74 VVGS-TAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVR 130
VG+ T G DH+DL GI ++A NA DYV+G L+ +
Sbjct: 61 FVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARG--VVDYVLGCLLAMAEVR-------- 110
Query: 131 NGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY--TSRKKKPGVSY 187
G+ L + G+VG G +G + + L G + + ++P +
Sbjct: 111 ------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEF 158
Query: 188 PFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEK 243
++ L A++DV+ + L + T H++++ + AL ++N RGA++D +
Sbjct: 159 ---VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQ 215
Query: 244 ELVHFLVRGSLVELVL 259
L L G+ +E+ L
Sbjct: 216 ALRRLLEGGADLEVAL 231
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 124 bits (314), Expect = 2e-33
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 74 VVGS-TAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVDVLRRVSSIDRFVR 130
VG+ TAG DHVD ++ GI + A NA + +YV L+ + R
Sbjct: 64 FVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA--VVEYVFSALLMLAER--------- 112
Query: 131 NGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY--TSRKKKPGVSY 187
G +L + +GIVG+G++GS + RL G + + +
Sbjct: 113 -----------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDF 161
Query: 188 PFYANVSGLAADSDVLIVCCALTEE----THHMINKDVMTALGKEGVIINVGRGALIDEK 243
+ L ++DVL L ++ T H+ ++ ++ L ++IN RG ++D
Sbjct: 162 ---RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNA 218
Query: 244 ELVHFLVRGSLVELVL 259
L+ L G + +VL
Sbjct: 219 ALLARLNAGQPLSVVL 234
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 113 bits (285), Expect = 3e-29
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 15/202 (7%)
Query: 60 LTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLLVD 117
LT D ++ L + G + VDL +RGI V NA N S A+ V+G L+
Sbjct: 59 LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGELLL 116
Query: 118 VLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAY 176
+LR V + G+ + A GK++GI+G G IG+++ G Y
Sbjct: 117 LLRGVPEANAKAHRGVG-NKLAA-GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 174
Query: 177 ---TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-II 232
++S L SDV+ + T +M+ + +L K G +I
Sbjct: 175 DIENKLPLGNATQVQ---HLSDLLNMSDVVSLHVPENPSTKNMMGAKEI-SLMKPGSLLI 230
Query: 233 NVGRGALIDEKELVHFLVRGSL 254
N RG ++D L L L
Sbjct: 231 NASRGTVVDIPALADALASKHL 252
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 111 bits (281), Expect = 1e-28
Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 17/203 (8%)
Query: 60 LTSDTLSLLPALEIVVGSTAGI--DHVDLQECRRRGILVTNA--GNAFSEDGADYVVGLL 115
LT + + L I VG + + V+L+ R+RGI V NA N S A+ V+G +
Sbjct: 70 LTEEIFAAANRL-IAVG-CFSVGTNQVELKAARKRGIPVFNAPFSNTRS--VAELVIGEI 125
Query: 116 VDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCS-I 174
+ ++RR+ G W + A + GK +GIVG G+IGS+V G +
Sbjct: 126 IMLMRRIFPRSVSAHAGGW-EKTAI-GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR 183
Query: 175 AY--TSRKKKPGVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGV-I 231
Y + + + V A++ L SDV+ + ++ T +I + + K+G +
Sbjct: 184 YYDTSDKLQYGNVKP--AASLDELLKTSDVVSLHVPSSKSTSKLITEAKL-RKMKKGAFL 240
Query: 232 INVGRGALIDEKELVHFLVRGSL 254
IN RG+ +D + L L G L
Sbjct: 241 INNARGSDVDLEALAKVLQEGHL 263
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 72.7 bits (178), Expect = 5e-15
Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 31/196 (15%)
Query: 49 VRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGA 108
V I LT + + P +V GI + L + + +
Sbjct: 75 VDTIFSNESIVLTEEMIEKTPNHCVVYS---GISNTYLNQ------CMKKTNRTLVKLME 125
Query: 109 DYVVGLLVDVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLV 168
+ + + +I +++ T+ G V ++GLG +G VA++
Sbjct: 126 RDDIAIYNSIPTAEGTIMMAIQH----------TDFTIHGANVAVLGLGRVGMSVARKFA 175
Query: 169 PFGCSIAYTSRKKKP-------GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDV 221
G + +R+ G+ + + D DV I ++ +V
Sbjct: 176 ALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTI-----PALVVTANV 230
Query: 222 MTALGKEGVIINVGRG 237
+ + +I++
Sbjct: 231 LAEMPSHTFVIDLASK 246
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 4e-06
Identities = 59/367 (16%), Positives = 104/367 (28%), Gaps = 140/367 (38%)
Query: 21 LSERF----TLLDPLLHSADSTHSFLSRHASSVRAILCLG-------------PSP--LT 61
L + + L+ L+ + T S L R + G P L
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 62 SDTLSLLPALE-------IVVGSTAGIDHVDLQECRRRGI------LVTNAGNAFSEDGA 108
S +S P + +V G +L+ +G LVT A ++
Sbjct: 233 SIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGATGHSQGLVTAVAIAETDSWE 290
Query: 109 DYVVGLLVDVLRRVSSI-----DRFVRNGLWP-------DHG-AYP---L---GSTL--- 146
+ + + + I + + L P ++ P L T
Sbjct: 291 SF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 147 ------------GGKRVGI---------V--G----LGSIGSEVAKRLVPFGCS---IAY 176
GK+V I V G L + + K P G I +
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 177 TSRKKKPGVSY-----PFYANVSGLAADSDVLIVCCALTEETHHMINKDVMTALGKEGVI 231
+ RK K + PF+ S +L +INKD++
Sbjct: 410 SERKLKFSNRFLPVASPFH---------SHLL-------VPASDLINKDLV--------- 444
Query: 232 INVGRGALIDEKEL---VHF--------LVRGSLVELVLMCLRTSLMCQRSCLHWIMLC- 279
+ K++ V+ ++ GS+ E ++ C+ R + W
Sbjct: 445 ---KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII------RLPVKWETTTQ 495
Query: 280 --CLHML 284
H+L
Sbjct: 496 FKATHIL 502
Score = 34.3 bits (78), Expect = 0.049
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 33/112 (29%)
Query: 173 SIAYTSRKKKPGVSYPFYANVSG--------LAADSDVLIVCCALTEET----------- 213
A K G+ P A +G LA+ +DV+ + E
Sbjct: 1740 EKAAFEDLKSKGL-IPADATFAGHSLGEYAALASLADVMSI-----ESLVEVVFYRGMTM 1793
Query: 214 HHMINKDVMTALGKEGVI-INVGRGALIDEKELVHFLVR------GSLVELV 258
+ +D G+I IN GR A +E + ++V G LVE+V
Sbjct: 1794 QVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Score = 29.6 bits (66), Expect = 1.5
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 20/67 (29%)
Query: 70 ALEIVVGSTAGI----DHVDLQECRRRGILVTNAGNAFSEDGADY----------VVGLL 115
AL S A + V++ RG+ + A ++Y
Sbjct: 1769 AL----ASLADVMSIESLVEV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 116 VDVLRRV 122
+ L+ V
Sbjct: 1823 QEALQYV 1829
Score = 28.9 bits (64), Expect = 2.2
Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 30/81 (37%)
Query: 30 PLLHSADSTHSFLSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAGIDHVDLQEC 89
+TH IL GP G +G+ + +
Sbjct: 491 ETTTQFKATH------------ILDFGP------------------GGASGLGVLTHRNK 520
Query: 90 RRRGILVTNAGNAFSEDGADY 110
G+ V AG DY
Sbjct: 521 DGTGVRVIVAGTLDINPDDDY 541
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 139 AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR---------KKKPGVSYPF 189
Y + GG ++ +VG G + SE+A + R +K
Sbjct: 12 VYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLI 71
Query: 190 YANVSGLAADSDVLIVCCALTEETHHMINKDVM 222
++ L ++DV+I T ++ + +
Sbjct: 72 -NDIDSLIKNNDVIITA---TSSKTPIVEERSL 100
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 37.7 bits (87), Expect = 0.002
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDV-LIVCCA 208
V I+G+G+IG ++ + Y + + P + SDV +V CA
Sbjct: 14 TVLIIGMGNIGKKLVELG---NFEKIYAYDRISKDI--PGVVRLDEFQVPSDVSTVVECA 68
Query: 209 LTEETHHMINKDVMTALGKEGVIINVGRGALIDEKELVHFL 249
+ + + + L I + A DE F
Sbjct: 69 ----SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFF 105
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 37.9 bits (89), Expect = 0.003
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 143 GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS---RKKKPGVSYPFYANVSG---L 196
+L G V + GLG++ + K+L G + T V+ V+
Sbjct: 168 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIY 227
Query: 197 AADSDVLIVCCAL----TEETHHMIN 218
D+ CAL + T +
Sbjct: 228 GVTCDIFAP-CALGAVLNDFTIPQLK 252
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 36.6 bits (84), Expect = 0.005
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS-DVLIVC 206
VG++G G+IG +A+ L G IA + + DV +
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE--KMVRGIDEFLQREMDVAVEA 57
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 35.2 bits (82), Expect = 0.016
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 20/88 (22%)
Query: 145 TLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTS-------RKKKPGVSYPFYANVSG-- 195
+L G V + GLG++G +A G + G + V+
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-----AVALED 226
Query: 196 -LAADSDVLIVCCAL----TEETHHMIN 218
L+ DV CA+ T E ++
Sbjct: 227 VLSTPCDVFAP-CAMGGVITTEVARTLD 253
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 35.3 bits (82), Expect = 0.018
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSR---------KKKPGVSYPFYANV 193
+L K V +VG G +G VAK LV G + +R + G + F +
Sbjct: 163 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRF-DEL 221
Query: 194 SGLAADSDVLIVCCALTEETHHMINKDVMTALGK 227
A SDV++ T H +I+ D + +
Sbjct: 222 VDHLARSDVVVSA---TAAPHPVIHVDDVREALR 252
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 34.5 bits (80), Expect = 0.035
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 150 RVGIVGLGSIGSEVAKRLV--------PFGCSIAYT-----SRKKKPGV--SYPFYANVS 194
VG++GLG++G L G I + K + P N
Sbjct: 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPF 71
Query: 195 GLAADSDVLIVC 206
+ D ++ IV
Sbjct: 72 DVVDDPEIDIVV 83
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 34.1 bits (78), Expect = 0.042
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR 179
+ G G +++ L P G I TSR
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSR 36
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 33.7 bits (77), Expect = 0.069
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 145 TLGGKRVGIVGLG--SIGSEVAKRLVPFGCS-IAYTSR 179
T K V I G G SIG+EV + L+ G + TSR
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSR 510
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 33.3 bits (76), Expect = 0.070
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFG----CSIAYTSRKKKPGVSYPF-YANVSGLAADSDVLI 204
V +VG+G GS + L ++ +++ G ++ ++ +
Sbjct: 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDV 68
Query: 205 VCCALTEETHHMINKDVMTALGK 227
+H + + A GK
Sbjct: 69 AYICSESSSHEDYIRQFLQA-GK 90
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 33.1 bits (75), Expect = 0.071
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLA-ADSDVLIVCCA 208
V I G G G + +++ G S+ + SR + P A V + A S ++ A
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLA 80
Query: 209 LTEETHHMINKDVMTALGK 227
+ E + + + + G+
Sbjct: 81 VHREHYDFLAELADSLKGR 99
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 33.5 bits (76), Expect = 0.079
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 126 DRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLV 168
DR +R LW DHG L S V ++ + G+E+ K LV
Sbjct: 16 DRQLR--LWGDHGQEALESA----HVCLINATATGTEILKNLV 52
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 31.9 bits (73), Expect = 0.11
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSI 174
K+ ++GLG G + K L G +
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEV 32
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 32.7 bits (74), Expect = 0.12
Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 144 STLGGKRVGIVGL-GSIGSEVAKRL-------VPFGCSIAYTSRKKKPGVSYPFYANVSG 195
+ +G K V I+G G +G+ + +++ + R + G+ + G
Sbjct: 7 NDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP---LTDGDG 63
Query: 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVI------INVGRGALIDEKELVHFL 249
++DV+++ L + + +D++ + + G I G + + ++ +F+
Sbjct: 64 WIDEADVVVLA--LPDNIIEKVAEDIVPRV-RPGTIVLILDAAAPYAGVMPERADITYFI 120
Query: 250 V 250
Sbjct: 121 G 121
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 32.4 bits (74), Expect = 0.12
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 153 IVGLGSIGSEVAKRLV-----PFGCSIAYTSRKKKP----GVSYPF 189
I+ LG L+ FG + +T+R K+ G Y F
Sbjct: 108 IIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHF 153
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 32.0 bits (73), Expect = 0.17
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 153 IVGLGSIGSEVAKRLV-----PFGCSIAYTSRKKKP----GVSYPF 189
++ LG + + L+ FG + +T+R K+ G Y F
Sbjct: 103 VIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHF 148
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 31.5 bits (71), Expect = 0.22
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSR 179
+VGI+G G +A RLV G + SR
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSR 59
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 31.5 bits (72), Expect = 0.23
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 40/138 (28%)
Query: 135 PDHGAYPLGSTLGGKRVGIV--GLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN 192
G P GS K + +V G G++G+EV K + ++ P + F
Sbjct: 10 HSSGLVPRGS-HMSKNI-LVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIK 67
Query: 193 VSGLAADS-------------DVLIVCCA------------LTEETHHMINKDVMTA--- 224
SG D VC A + MI+ ++ +A
Sbjct: 68 DSGEEEIKSVIEKINSKSIKVDTF-VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFAS 126
Query: 225 -------LGKEGVIINVG 235
L + G+ + G
Sbjct: 127 AHIGAKLLNQGGLFVLTG 144
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 31.6 bits (72), Expect = 0.25
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR 179
++ I G G +G E+A+RL G + R
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRR 34
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 31.5 bits (72), Expect = 0.30
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 150 RVGIVGLGSIGSEVAKRLVPF--GCSIA--YTSRKKKPGVSYPF---YANVSGLAADSDV 202
+VGI+G G GS L+ I+ TSR ++ +P + + D +
Sbjct: 7 KVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAI 66
Query: 203 LIVCCALTEETHHMINKDVMTALGK 227
+V H+ + A GK
Sbjct: 67 ELVIVTTPSGLHYEHTMACIQA-GK 90
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 31.7 bits (71), Expect = 0.30
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 146 LGGKRVGIVGLGSIGSEVAKRLVPFG 171
+ V I+GL +G E+AK +V G
Sbjct: 25 MQTSNVLILGLKGLGVEIAKNVVLAG 50
Score = 31.0 bits (69), Expect = 0.59
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 136 DHGAYPLGSTLGGK----RVGIVGLGSIGSEVAKRLVPFGCS 173
D+ G K +V +VG G+IG E+ K G
Sbjct: 409 DNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLG 450
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 30.3 bits (69), Expect = 0.30
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSI 174
++G + G + + L G +
Sbjct: 7 YEYIVIGSEAAGVGLVRELTAAGKKV 32
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 31.1 bits (70), Expect = 0.31
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSI-----AYTSRKKKPGVSYPFYANVSGLAADSDVLI 204
RVG +G G + +A RL G + + + + V+I
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 205 VCC 207
Sbjct: 62 SAV 64
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 31.0 bits (71), Expect = 0.35
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 23/131 (17%)
Query: 120 RRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIA-YTS 178
S +D N + G+ T K++G +GLG +GS + L+ G ++ +
Sbjct: 6 HHSSGVDLGTENLYFQSMGS----ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNR 61
Query: 179 RKKKP------GVSYPFYANVSGLAADSDVLIVCCALTEETHHMINKDVMT-ALGKEGVI 231
+K G + + + D+ C + K LG GV+
Sbjct: 62 TAEKCDLFIQEGARL--GRTPAEVVSTCDITFACVSDP--------KAAKDLVLGPSGVL 111
Query: 232 INVGRGA-LID 241
+ G +D
Sbjct: 112 QGIRPGKCYVD 122
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.8 bits (69), Expect = 0.36
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 134 WPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR 179
++ + G ++ ++G G++G +A L G + +R
Sbjct: 11 HHENLYFQ------GMKIAVLGTGTVGRTMAGALADLGHEVTIGTR 50
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 31.2 bits (71), Expect = 0.38
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 142 LGSTLGGKRVGIVGL-GSIGSEVAKRLVPFG 171
L S + R ++G GSIG V K +
Sbjct: 29 LQSVVSQSRFLVLGGAGSIGQAVTKEIFKRN 59
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 31.0 bits (70), Expect = 0.39
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 114 LLVDVLRRVSSIDRFV-RNGLWPDHGAYPLGST----LGGKRVGIVGLGSIGSEVAKRLV 168
+ +D R + + +F+ R+G + P + L +V ++G G +G E+ K L
Sbjct: 1 MKLDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLA 60
Query: 169 PFG 171
G
Sbjct: 61 LSG 63
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 31.1 bits (71), Expect = 0.41
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPG------------VSYPFYANVSGLA 197
++ ++G G++G L G + R +P + AN
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61
Query: 198 ADSDVLIVCC 207
A SD+L+V
Sbjct: 62 ATSDLLLVTL 71
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 30.8 bits (70), Expect = 0.43
Identities = 8/90 (8%), Positives = 22/90 (24%), Gaps = 13/90 (14%)
Query: 150 RVGIVGLGSIGSEVAKRL---------VPFGCSIAYTSRKK---KPGVSYPFYANVSGLA 197
++ ++G + L P + +K + + Y N +
Sbjct: 4 KICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEML 63
Query: 198 ADSDVLIVCCALTEETHHMINKDVMTALGK 227
I+ + I + +
Sbjct: 64 EKEKPDILVINTVFSLNGKILLEALER-KI 92
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 30.6 bits (69), Expect = 0.45
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 150 RVGIVGLGSIGSEVAKRLVPF-GCSIAYTSRKKKPGVS-----YPFYANVSGLAADSDVL 203
R IVG G+IG + L IA R+ V + +++ L DV
Sbjct: 11 RAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVA 69
Query: 204 IVC 206
+VC
Sbjct: 70 LVC 72
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 30.8 bits (70), Expect = 0.49
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 150 RVGIVGLGSIGSEVAKRL---VPFGCSIAY---------TSRKKKPGVSYPFYANVSGLA 197
R+G++G G+IG E R+ + G I ++ ++ Y N L
Sbjct: 4 RIGVIGTGAIGKEHINRITNKLS-GAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLL 62
Query: 198 ADSDVLIVCCALTEETHH 215
AD +V V H
Sbjct: 63 ADENVDAVLVTSWGPAHE 80
>1yb4_A Tartronic semialdehyde reductase; structural genomics,
oxidoreductase, salmonella typhimurium LT2, PSI, protein
ST initiative; 2.40A {Salmonella typhimurium}
Length = 295
Score = 30.6 bits (70), Expect = 0.50
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSI-AYT-SRKKKPGVSY--PFYANVSGLAADSDVLIV 205
++G +GLG +GS +A L G + T +S + +D++ +
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGAVNVETARQVTEFADIIFI 64
Query: 206 CCALTEETHHMINKDVMT-ALGKEGVIINVGRGA-LID 241
T V G+ G +G ++D
Sbjct: 65 MVPDT--------PQVEDVLFGEHGCAKTSLQGKTIVD 94
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 30.3 bits (69), Expect = 0.61
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 150 RVGIVGLGSIGSEVAKRL 167
R+ ++G G++G V + +
Sbjct: 6 RIILMGTGNVGLNVLRII 23
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 30.2 bits (69), Expect = 0.62
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 150 RVGIVGLGSIGSEVAKRL 167
++ IVG G++G VA+ L
Sbjct: 4 KIAIVGFGTVGQGVAELL 21
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 30.2 bits (69), Expect = 0.63
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKP------GVSYPFYANVSGLAADSD 201
++G +GLG++G +A L+ G + A+ + G N +AA SD
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQ--ACENNQKVAAASD 62
Query: 202 VLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGAL-ID 241
++ + VM G GV+ G + +D
Sbjct: 63 IIFTSLPNAGIV-----ETVM--NGPGGVLSACKAGTVIVD 96
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 30.4 bits (69), Expect = 0.66
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 150 RVGIVGLGSIGSE-VAKRLVPFGCSIAYTS----------RKKKPGVSYPFYANVSGLAA 198
R +GL + ++L+ G +A P V PF A+ L
Sbjct: 6 RFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSV--PFAASAEQLIT 63
Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGK 227
D+ + ++ CA+ + + A GK
Sbjct: 64 DASIDLIACAVIPCDRAELALRTLDA-GK 91
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 30.5 bits (68), Expect = 0.69
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 146 LGGKRVGIVGLGSIGSEVAKRLV 168
+ G RV +VG G IG E+ K LV
Sbjct: 15 VAGGRVLVVGAGGIGCELLKNLV 37
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 30.4 bits (69), Expect = 0.70
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 150 RVGIVGLGSIGSEVAKRLVPF--GCSIAY---------TSRKKKPGVSYPFYANVSGLAA 198
+ GIVG+G IGS+ +RL G + + K + Y + L
Sbjct: 25 KAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLIN 84
Query: 199 DSDVLIVCCALTEETH 214
D DV +V + E H
Sbjct: 85 DKDVEVVIITASNEAH 100
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.4 bits (69), Expect = 0.72
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIA 175
G +V I+G G IG + A L G S +
Sbjct: 494 GNKVAIIGCGGIGFDTAMYLSQPGESTS 521
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.9 bits (68), Expect = 0.76
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 9/38 (23%)
Query: 161 SEVAKRLV-----PFGCSIAYTSRKKKP----GVSYPF 189
S + L+ F + YT+R + G Y F
Sbjct: 33 SHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHF 70
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 29.9 bits (68), Expect = 0.79
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 150 RVGIVGLGSIGSEVAKRL 167
+ I GLG++G + + +
Sbjct: 8 NLSIFGLGNVGLNLLRII 25
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.1 bits (67), Expect = 0.80
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKP------GVSYPFYANVSGLAADSDV 202
+ ++G G++ + +AK L G I SR ++ V + +++ + + +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 203 LIVCC 207
IV
Sbjct: 72 YIVSL 76
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 29.9 bits (68), Expect = 0.85
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKP------GVSYPFYANVSGLAADSD 201
K++ +GLG +G+ +A L+ G + + G S + +D
Sbjct: 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGAS--AARSARDAVQGAD 61
Query: 202 VLIVCCALTEETHHMINKDVMTA-LGKEGVIINVGRGAL-ID 241
V+I L ++ V L +G++ ++ G L ++
Sbjct: 62 VVISM--LPA------SQHVEGLYLDDDGLLAHIAPGTLVLE 95
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent,
transport, cell membrane, transmembrane, membrane
protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Length = 1052
Score = 30.2 bits (69), Expect = 0.87
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
Query: 87 QECRRRGILVTNAGNAF-------SEDG-------ADYVVGLLVDVLRRV 122
QE +R+GI VT A F S DG ++Y+V + D L R
Sbjct: 120 QEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRT 169
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 29.9 bits (68), Expect = 0.92
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 134 WP-DHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPF 170
WP D P G GKRVG++G G+ G +E AK L F
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVF 214
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 29.6 bits (67), Expect = 0.97
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 150 RVGIVGLGSIGSEVAKR---------LVPFGCSIAYTSRK---KKPGVSYPFYANVSGLA 197
R+G+VGLG I + L S + + P+ ++S LA
Sbjct: 7 RIGVVGLGGIAQKAWLPVLAAASDWTLQGA-WSPTRAKALPICESWRI--PYADSLSSLA 63
Query: 198 ADSDVLIVCCALTEETHHMINKDVMTALGK 227
A D + V + T +H + ++ A G
Sbjct: 64 ASCDAVFVHSS-T-ASHFDVVSTLLNA-GV 90
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 29.9 bits (68), Expect = 1.0
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 141 PLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI-AY--TSRKKKPGVSY--PFYANVSG 195
+ S +++ +G GS+G +A+RL G ++ + T + + +
Sbjct: 24 TVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARA 83
Query: 196 LAADSDVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGA-LID 241
A D+D+++ V L +GV + G+ +D
Sbjct: 84 AARDADIVVSMLENG--------AVVQDVLFAQGVAAAMKPGSLFLD 122
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 29.4 bits (67), Expect = 1.0
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 146 LGGKRVGIVGLGSIGSEVAKRLVPFGCS-----IAYTSRKKKPGVSYPFYANVSGLAADS 200
+ ++G +GLG +GS +A + Y KK ++Y ++ LA
Sbjct: 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNY--MSSNEELARHC 59
Query: 201 DVLIVC 206
D+++
Sbjct: 60 DIIVCA 65
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A
{Thermus thermophilus}
Length = 332
Score = 29.8 bits (68), Expect = 1.0
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 150 RVGIVGLGSIGSEVAKRL 167
++ ++G G++GS +
Sbjct: 5 KIALLGGGTVGSAFYNLV 22
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein,
membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY
C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB:
2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A*
1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A*
3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 29.8 bits (68), Expect = 1.0
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 14/50 (28%)
Query: 87 QECRRRGILVTNAGNAF-------SEDG-------ADYVVGLLVDVLRRV 122
QE +++G+ V + ++F + DG +DYV + D + R
Sbjct: 120 QEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 29.6 bits (67), Expect = 1.1
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP---------GVSYPFYANVSGLAAD 199
+ V I+GLG IG + + L S+ +R + VS A + AA+
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 200 SDVLIVC 206
++++
Sbjct: 69 DALIVLA 75
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 150 RVGIVGLGSIGS-----EVAK----RLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
+ G+ G G ++ L S+++ P + L D
Sbjct: 7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQA--SIVRSFKELTEDP 64
Query: 201 DVLIVCCALTEETHHMINKDVMTALGK 227
++ ++ + TH+ + A GK
Sbjct: 65 EIDLIVVNTPDNTHYEYAGMALEA-GK 90
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 29.6 bits (67), Expect = 1.1
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 150 RVGIVGLGSIGSE-----VAK----RLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
+VG++G G + L S A P + P ++ L D
Sbjct: 9 KVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAI--PVVSDPQMLFNDP 66
Query: 201 DVLIVCCALTEETHHMINKDVMTALGK 227
+ ++ +TH + + + A GK
Sbjct: 67 SIDLIVIPTPNDTHFPLAQSALAA-GK 92
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 29.0 bits (66), Expect = 1.2
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 9/38 (23%)
Query: 161 SEVAKRLV-----PFGCSIAYTSRKKKP----GVSYPF 189
+ L+ F I +T+R K G +Y F
Sbjct: 19 RHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYF 56
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 29.9 bits (67), Expect = 1.2
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 143 GSTLGGKRVGI--VGLGSIGSEVAKRLVPFGCS-IAYTSRKKKPGVSY 187
G T GK + G GSIG+EV + L+ G I TSR + Y
Sbjct: 647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEY 694
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 29.4 bits (66), Expect = 1.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 150 RVGIVGLGSIGSEVAKRLV 168
RV +VGL +G+E+AK L+
Sbjct: 38 RVLLVGLKGLGAEIAKNLI 56
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 29.5 bits (67), Expect = 1.2
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 146 LGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKK 181
GK I G G+ +G + L G SRK
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 60
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.9 bits (67), Expect = 1.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 143 GSTLGGKRVGIVGLG--SIGSEVAKRLVPFGCS-IAYTSRKKKPGVSY 187
G T K V I G G SIG+EV + L+ G + TSR K Y
Sbjct: 670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDY 717
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 29.5 bits (67), Expect = 1.3
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS 173
R+ IVG G IG E+A G
Sbjct: 144 PQSRLLIVGGGVIGLELAATARTAGVH 170
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 29.1 bits (66), Expect = 1.3
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 146 LGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKK 181
L K I G GS IG +A+ + GC SR
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL 61
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 29.4 bits (66), Expect = 1.3
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 141 PLGSTLGGKRVGIVGLG---SIGSEVAKRLVPFGCSIAYT 177
PL L GK + G+ G + K L G +
Sbjct: 2 PLPVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVG 41
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 29.3 bits (65), Expect = 1.4
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 19/96 (19%)
Query: 150 RVGIVGLGSIGSEVAKRLVPF-GCSIAY-----------------TSRKKKPGVSYPFYA 191
R+ + +G G + + I + KK V
Sbjct: 22 RIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGND 81
Query: 192 NVSGLAADSDVLIVCCALTEETHHMINKDVMTALGK 227
+ + D ++ V + E HH M A GK
Sbjct: 82 DYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKA-GK 116
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 29.1 bits (65), Expect = 1.4
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSI--AYTSRKKKPGVSYPFYANVSGL---------- 196
+ +G G +A L + AY R P S A + L
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 197 AADSDVLIVCCALTEETHHMINKDVMTALGKEGVII 232
A +DV++ + + L E V I
Sbjct: 85 IACADVVLSL--VVGAATKAVAASAAPHLSDEAVFI 118
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 29.4 bits (66), Expect = 1.4
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGC----------SIAYTSRKKKPGVSYPFYANVSGLAAD 199
++G +G G S +A L G + ++ R ++ GVS A+V+ +A +
Sbjct: 26 KLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS--CKASVAEVAGE 83
Query: 200 SDVLIVCC 207
DV+
Sbjct: 84 CDVIFSLV 91
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 29.0 bits (64), Expect = 1.5
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 11/66 (16%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSR--------KKKPGVSYPFYANVSGLAADSD 201
+ VG G++ + L SR + G A + +
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK---AATLEKHPELNG 60
Query: 202 VLIVCC 207
V+ V
Sbjct: 61 VVFVIV 66
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl
aminopeptidase, structura genomics; 2.39A {Cytophaga
hutchinsonii atcc 33406}
Length = 321
Score = 29.3 bits (66), Expect = 1.5
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 122 VSSIDRFVRNG-LWPDHGAYPLGSTLGGKRVGIVGLGSIGS-EVAKRLVPFGCSIAYTSR 179
VS + G G +G G G++ + RL+ G + +
Sbjct: 92 VSYNNHLHPIGSPSAKEGYRLVGKDSNGDIEGVLKIVDEEWMLETDRLIDRGTEVTFKPD 151
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 28.7 bits (63), Expect = 1.6
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSR 179
+ I G G++G + G + Y
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGS 50
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 29.1 bits (66), Expect = 1.6
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCS-IAYTSRKKKP------GVSYPFYANVSGLAADSDV 202
VG +GLG++G+ +AK L+ G I Y G ++ + +A +D
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQV--VSSPADVAEKADR 59
Query: 203 LIVCCALTEETHHMI--NKDVMTA-LGKEGVIINVGRGAL-ID 241
+I M+ + + + A G G++ V +G+L ID
Sbjct: 60 IIT----------MLPTSINAIEAYSGANGILKKVKKGSLLID 92
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 29.1 bits (66), Expect = 1.6
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 149 KRVGIVGLGSIGSEVA---KRLVPFGCSIAYTSRK------KKPGVSYPFYANVSGLAAD 199
K + I GLG IG+ +A KR P + Y + G+ A+ AA
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAAL 66
Query: 200 SDVLIVC 206
+DV+I+
Sbjct: 67 ADVIILA 73
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.1 bits (66), Expect = 1.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS 173
R+ ++G G IG EVA +
Sbjct: 148 ADNRLVVIGGGYIGLEVAATAIKANMH 174
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 28.9 bits (65), Expect = 1.7
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 139 AYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR 179
Y + G RV I+G G+ G+++ + + T
Sbjct: 154 HYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQH 194
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 29.0 bits (65), Expect = 1.9
Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 14/89 (15%)
Query: 150 RVGIVGLGSIGSE-VAKRLVPFGCSIAYTS----------RKKKPGVSYPFYANVSGLAA 198
R VGL L+ G +A A +
Sbjct: 28 RFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADA--RRIATAEEILE 85
Query: 199 DSDVLIVCCALTEETHHMINKDVMTALGK 227
D ++ ++ A + M GK
Sbjct: 86 DENIGLIVSAAVSSERAELAIRAMQH-GK 113
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.9 bits (65), Expect = 1.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 148 GKRVGIVGLGSIGSEVA 164
K + I+G G +GSE+A
Sbjct: 180 VKSITIIGGGFLGSELA 196
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 29.1 bits (66), Expect = 1.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS 173
R+ IVG G IG EVA G S
Sbjct: 142 SATRLLIVGGGLIGCEVATTARKLGLS 168
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 28.8 bits (65), Expect = 1.9
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 15/90 (16%)
Query: 150 RVGIVGLGSIGSEVAKRLV---PFGCSIAYTSR---------KKKPGVSYPFYANVSGLA 197
+G G + V +A+ R + F +++ +
Sbjct: 4 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHI--HFTSDLDEVL 61
Query: 198 ADSDVLIVCCALTEETHHMINKDVMTALGK 227
D DV +V ++H K + A GK
Sbjct: 62 NDPDVKLVVVCTHADSHFEYAKRALEA-GK 90
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS 173
K V ++G G IG E A G
Sbjct: 141 DKKHVVVIGAGFIGLEFAATARAKGLE 167
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 29.0 bits (66), Expect = 2.0
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 27/104 (25%)
Query: 142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI-------------------AYTSRKKK 182
+G + G RV I G G++G+ A+ G + ++
Sbjct: 229 IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQE 288
Query: 183 PG--VSYP---FYANVSGLAADSDVLIVC---CALTEETHHMIN 218
G YP + L+ +TE+ I
Sbjct: 289 FGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIR 332
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 28.7 bits (65), Expect = 2.0
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 17/55 (30%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVL 203
+ V IVG+G +G S A + R+ + G + + +
Sbjct: 2 QNVLIVGVGFMGG-----------SFAKSLRRSGFKG------KIYGYDINPESI 39
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 29.1 bits (66), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 13/44 (29%)
Query: 134 WPDHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPF 170
WP+ G +L G+RVG++G GS G + + L F
Sbjct: 170 WPE------GKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVF 207
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 28.8 bits (64), Expect = 2.1
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANV 193
G+ V +VG S +++ + L P Y S + V
Sbjct: 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQV 257
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 28.7 bits (65), Expect = 2.1
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKP------GVSYPFYANVSGLAADSD 201
++ G +GLG +GS +AK LV GCS+ + +K G A +
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAER--AATPCEVVESCP 59
Query: 202 VLIVCCALTEETHHMINKDVMT-ALGKEGVIINVGRGA-LID 241
V A GK GV+ +G G +D
Sbjct: 60 VTFAMLADP--------AAAEEVCFGKHGVLEGIGEGRGYVD 93
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 28.8 bits (65), Expect = 2.1
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 150 RVGIVGLGSIGSE-----VAK----RLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADS 200
+ ++G G +G + L ++ P V+ A+
Sbjct: 9 NIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTV--IASPEAAVQHP 66
Query: 201 DVLIVCCALTEETHHMINKDVMTALGK 227
DV +V A TH + + + A GK
Sbjct: 67 DVDLVVIASPNATHAPLARLALNA-GK 92
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 147 GGKRVGIVGLGSIGSEVAKRLVPFGCS 173
G K ++G G IG E A L FG +
Sbjct: 151 GAKNAVVIGGGYIGLEAAAVLTKFGVN 177
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 28.5 bits (64), Expect = 2.2
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 150 RVGIVGLGSIGSEVAK--------RLVPFGCSIAYTSRK--KKPGVSYPFYANVSGLAAD 199
++ IVG G +GS + I R+ + G+ Y + + AD
Sbjct: 7 QLVIVGYGGMGSYHVTLASAADNLEVHGV-FDILAEKREAAAQKGL--KIYESYEAVLAD 63
Query: 200 SDVLIVCCALTEETHHMINKDVMTALGK 227
V V A ++H + + A GK
Sbjct: 64 EKVDAVLIATPNDSHKELAISALEA-GK 90
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 28.8 bits (65), Expect = 2.3
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 150 RVGIVGLGSIGS-------EVAKRLVPFGCSIAYTSRKKKPGVSYP---FYANVSGLAAD 199
++G +G G + + + L + + K F A+++ L D
Sbjct: 4 KMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTD 63
Query: 200 SDVLIVCCALTEETHHMINKDVMTALGK 227
++ ++ TH+ + K + A GK
Sbjct: 64 PEIELITICTPAHTHYDLAKQAILA-GK 90
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 28.7 bits (65), Expect = 2.3
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIA-Y--TSRKKKPGVSY--PFYANVSGLAADSDVL 203
VG +GLG +G ++ L+ G + + T K V + + + +
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 204 IVCCALTEETHHMINKDVMT-ALGKEGVIINVGRGA-LID 241
I + ++ K GV+ + G ID
Sbjct: 82 IAMLSDP--------CAALSVVFDKGGVLEQICEGKGYID 113
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 28.6 bits (65), Expect = 2.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
G L R+ I G G+ GS +AK + G +
Sbjct: 215 KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKV 247
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 28.9 bits (65), Expect = 2.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
+ G K + G G++G + L FG
Sbjct: 238 MTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKC 270
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 28.4 bits (64), Expect = 2.3
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 130 RNGLWPDH----GAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGV 185
+GL P + +L + V IVG+G +G S A + R+
Sbjct: 11 SSGLVPRGSHMKNIIKILKSLSMQNVLIVGVGFMGG-----------SFAKSLRRSGFKG 59
Query: 186 SYPFYANVSGLAADSDVL 203
+ G + + +
Sbjct: 60 ------KIYGYDINPESI 71
>1a34_A Protein (satellite tobacco mosaic virus); water structure, virus
assembly, macromolecular interactions; HET: U; 1.81A
{Tobacco necrosis satellite virus} SCOP: b.121.7.1
Length = 159
Score = 27.8 bits (61), Expect = 2.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 17 FNPPLSE-RFTLLDPLLHSADSTHSFLSRHASSVRAILCLG---PSPLTSDTLS 66
PP++E F L PL + DST F R AS++ +G P+ L +T++
Sbjct: 84 LTPPVNEYSFVRLKPLFKTGDSTEEFEGR-ASNINTRASVGYRIPTNLRQNTVA 136
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 28.4 bits (64), Expect = 2.6
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 150 RVGIVGLGSIGSEVAKRLV-------PFGCSIAYTSRKKKPGVSY--PFYANVSGLAADS 200
++G++GLGSI + ++ G +++K Y + ++ LA
Sbjct: 8 KMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKC 67
Query: 201 DVLIVCCALTEETHHMINKDVMTALGK 227
D + + + T ETH+ I K ++ G
Sbjct: 68 DCIFLHSS-T-ETHYEIIKILLNL-GV 91
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 28.2 bits (64), Expect = 3.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
G L G RV + GLG +G+ VA G +
Sbjct: 212 RGLDLRGARVVVQGLGQVGAAVALHAERLGMRV 244
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 28.3 bits (63), Expect = 3.0
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 150 RVGIVGLGSIGSEVAK--------RLVPFGCSIAYTSRKKKPGVSYPFY--ANVSGLAAD 199
RV IVG G++G V K LV SR+ P + A+V A D
Sbjct: 5 RVAIVGYGNLGRSVEKLIAKQPDMDLV------GIFSRRATLDTKTPVFDVADVDKHADD 58
Query: 200 SDVLIVC 206
DVL +C
Sbjct: 59 VDVLFLC 65
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 28.0 bits (63), Expect = 3.1
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 14/76 (18%)
Query: 150 RVGIVGLGSIGSEVAKRL--VPFGCSIAY---------TSRKKKPGVSYPFYANVSGLAA 198
R+ + G G IG A + P + + G A+ + A
Sbjct: 6 RIALFGAGRIGHVHAANIAANP-DLELVVIADPFIEGAQRLAEANGA--EAVASPDEVFA 62
Query: 199 DSDVLIVCCALTEETH 214
D+ + TH
Sbjct: 63 RDDIDGIVIGSPTSTH 78
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 27.9 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 150 RVGIVGL-GSIGSEVAKRLVPFGCSIAYTSRK 180
RV ++G G++G +A RL G I SR+
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 28.3 bits (64), Expect = 3.2
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
G + ++ + G G++G+ K + G +
Sbjct: 206 FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKV 238
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 27.9 bits (63), Expect = 3.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSI 174
+V I+G + +A+ ++ +
Sbjct: 2 KVIIIGGETTAYYLARSMLSRKYGV 26
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 28.2 bits (64), Expect = 3.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 142 LGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
L + GK V I G+G++G A L G +
Sbjct: 204 LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKV 236
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 27.9 bits (63), Expect = 3.9
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 17/100 (17%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKP-------GVSYPFYANVSGLAADS 200
VGIVGLGS+G A+ + G S + A+ A
Sbjct: 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACG--AAASAREFAGVV 65
Query: 201 DVLIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALI 240
D L++ + + V+ G++GV + G+ +
Sbjct: 66 DALVILVVNAAQV-----RQVL--FGEDGVAHLMKPGSAV 98
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 27.9 bits (63), Expect = 3.9
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKP------GVSYPFYANVSGLAADSD 201
G +GLG +G +A LV G + + K G ++ + + A D
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQ--ASSPAEVCAACD 59
Query: 202 VLIVCCALTEETHHMINKDVMT-ALGKEGVIINVGRGA-LID 241
+ I A G GV+ +G G ID
Sbjct: 60 ITIAMLADP--------AAAREVCFGANGVLEGIGGGRGYID 93
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 27.5 bits (62), Expect = 4.0
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 42 LSRHASSVRAILCLGPSPLTSDTLSLLPALEIVVGSTAG--IDHVDLQECRRRGILVTNA 99
+S+H + + G + L D + L + +V+ T G +D + ++G+ +
Sbjct: 94 VSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA-TPGRILDLI------KKGVAKVDH 146
Query: 100 GNAFSEDGAD 109
D AD
Sbjct: 147 VQMIVLDEAD 156
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 27.7 bits (62), Expect = 4.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 140 YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSI 174
Y + L G+ V +VG G+I + K + G +I
Sbjct: 23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAI 57
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 27.8 bits (61), Expect = 4.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 149 KRVGIVGLGSIGSEVAKRL 167
V + G G+IG VA +
Sbjct: 2 VNVAVNGYGTIGKRVADAI 20
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol,
oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Length = 332
Score = 27.6 bits (62), Expect = 4.3
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 150 RVGIVGLGSIGSEVAKRL--VPFGCSIAYTSRK--------KKPGVSYPFYANVSGLAAD 199
R G++G +I E G ++ S + G+ +V L D
Sbjct: 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGK-SVTSVEELVGD 60
Query: 200 SDVLIVCCALTEETHH 215
DV V + T E H
Sbjct: 61 PDVDAVYVSTTNELHR 76
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 27.9 bits (63), Expect = 4.4
Identities = 11/13 (84%), Positives = 12/13 (92%)
Query: 148 GKRVGIVGLGSIG 160
GK+VGIVGLG IG
Sbjct: 180 GKKVGIVGLGGIG 192
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 27.5 bits (62), Expect = 4.7
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSI-AYTSRKKKPGVSYPFYANVSG----LAADSDVL 203
+VG +GLG +G ++K L+ G S+ + A + +A DV+
Sbjct: 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 65
Query: 204 IVCCALTEETHHMINKDVMTA-LGKEGVIINVGRGA-LID 241
I + V LG+ G+I G LID
Sbjct: 66 ITMLPNS--------PHVKEVALGENGIIEGAKPGTVLID 97
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 27.9 bits (63), Expect = 4.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 12/44 (27%)
Query: 134 WPDHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPF 170
WP G GKRVG++G GS G +E A++L F
Sbjct: 182 WPHDGV-----DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVF 220
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 27.4 bits (61), Expect = 5.0
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 150 RVGIVGLGSIGSEVAKRLVPF-----GCSIA--YTSRKKKPGVSYPFYANVSG-LAADSD 201
+ IVG+G I + +P + + GV Y + L A+
Sbjct: 27 NLAIVGVGKIVR---DQHLPSIAKNANFKLVATASRHGTVEGV--NSYTTIEAMLDAEPS 81
Query: 202 VLIVCCALTEETHHMINKDVMTALGK 227
+ V + + + + A GK
Sbjct: 82 IDAVSLCMPPQYRYEAAYKALVA-GK 106
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A
{Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Length = 435
Score = 27.8 bits (62), Expect = 5.3
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 189 FYANVSGLAADSDVLIVCCALTEETHHMINKDVM----TALGKEGVIINVGRGALIDEK- 243
+ +S S + + I +V +L + I V RG +
Sbjct: 95 YVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPL 154
Query: 244 ELVHFLVRGSLVELVLMCLRT 264
L+H + E+ R
Sbjct: 155 LLMHITQGVAGEEVNTAHYRH 175
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 27.4 bits (61), Expect = 5.4
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 150 RVGIVGLGSIGSEVAK---------RLVPFGCSIAYTSRK---KKPGVSYPFYANVSGLA 197
R GI GLG GS + ++V C R+ K+ G+ P +A ++ +
Sbjct: 4 RFGICGLGFAGSVLMAPAMRHHPDAQIVAA-CDPNEDVRERFGKEYGI--PVFATLAEMM 60
Query: 198 ADSDVLIVCCALTEETH 214
+ V A + H
Sbjct: 61 QHVQMDAVYIASPHQFH 77
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase;
HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3
d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Length = 358
Score = 27.6 bits (62), Expect = 5.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 150 RVGIVGLGSIGSEVAKRL 167
V ++G G +GS +L
Sbjct: 6 NVAVIGAGVVGSAFLDQL 23
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 27.1 bits (61), Expect = 5.6
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 146 LGGKRVGIVGLGS-IGSEVAKRLVPFGCSIAYTSRKK 181
+ K V I G S +G +A R G + T R K
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTK 40
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 27.6 bits (62), Expect = 5.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 148 GKRVGIVGLGSIG 160
G +VG+ G G +G
Sbjct: 177 GTKVGVAGFGGLG 189
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 27.1 bits (61), Expect = 5.9
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 149 KRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR--------KKKPGVSYPFYANVSGLAADS 200
++GI+G+G + S + K L + + ++ + Y + L
Sbjct: 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY--AMSHQDLIDQV 61
Query: 201 DVLIVC 206
D++I+
Sbjct: 62 DLVILG 67
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 27.2 bits (61), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAY--TSRKKK 182
GK+VG+VG+G +G K G + TS K+
Sbjct: 195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR 231
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric
dihydodiol dehydrogenase, structural genomics; 2.70A
{Enterococcus faecalis}
Length = 330
Score = 27.2 bits (61), Expect = 6.0
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 16/90 (17%)
Query: 150 RVGIVGLGSIGSEVAK--RLVPFGCSIAYTSR--------KKKPGVSYPFYANVSGLAAD 199
R GI+ I R SR K+ + Y + L D
Sbjct: 7 RYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIP-VAYGSYEELCKD 65
Query: 200 SDVLIVCCALTEETHHMINKDVMTAL--GK 227
+ I+ + H+ AL GK
Sbjct: 66 ETIDIIYIPTYNQGHY---SAAKLALSQGK 92
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 27.3 bits (61), Expect = 6.1
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 150 RVGIVGLGSIGSEVAK--------RLVPFGCSIAYTSRK---KKPGVSYPFYANVSGLAA 198
V +GLG +A +LV S R+ K+ A + L A
Sbjct: 7 GVAAIGLGRWAYVMADAYTKSEKLKLVTC-YSRTEDKREKFGKRYNC--AGDATMEALLA 63
Query: 199 DSDVLIVCCALTEETHH 215
DV +V + + H
Sbjct: 64 REDVEMVIITVPNDKHA 80
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 26.3 bits (58), Expect = 6.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 149 KRVGIVGLGSIGSEVAKRLV 168
+ +VG G IG +A L
Sbjct: 6 WNICVVGAGKIGQMIAALLK 25
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 27.3 bits (61), Expect = 6.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 148 GKRVGIVGLGS--IGSEVAKRLVPFGCSIAYTSRKKKPG 184
GK+V + +G VA+ L G ++ + +
Sbjct: 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS 561
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 27.2 bits (61), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 141 PL---GSTLGGKRVGIVGLGSIG 160
PL G GK +GIVGLG +G
Sbjct: 178 PLKYFGLDEPGKHIGIVGLGGLG 200
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 27.2 bits (61), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 141 PL---GSTLGGKRVGIVGLGSIG 160
PL G G R GI+GLG +G
Sbjct: 171 PLSHFGLKQPGLRGGILGLGGVG 193
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 27.2 bits (61), Expect = 7.2
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 149 KRVGIVGLGSIGSEVAKRL 167
+R+ IVG G+IG+ +AKRL
Sbjct: 236 RRIMIVGGGNIGASLAKRL 254
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 26.6 bits (59), Expect = 7.2
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 125 IDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVAKRL 167
+ L G +V I+G+G IG+ L
Sbjct: 20 LQETAAEKLNQR----DQLINPGHAQVLILGMGRIGTGAYDEL 58
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 26.9 bits (60), Expect = 7.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 145 TLGGKRVGIVGLGS--IGSEVAKRLVPFGCSIAYTSRKKKPGVSYP 188
+L GK + I G GS IG +AKR+ G ++A ++ +P P
Sbjct: 6 SLRGKTMFISG-GSRGIGLAIAKRVAADGANVALVAKSAEPHPKLP 50
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 26.9 bits (60), Expect = 7.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 150 RVGIVGLGSIGSEVAKRLV 168
R I+GLG +G A+ LV
Sbjct: 10 RAAIIGLGRLGERHARHLV 28
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 27.1 bits (61), Expect = 8.2
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 134 WPDHGAYPLGSTLGGKRVGIVGLGSIG-------SEVAKRLVPF 170
WP G+RVG++G GS G ++ A L F
Sbjct: 177 WPHEPV-----DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVF 215
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 26.4 bits (59), Expect = 8.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIA 175
+ I G G +GS +A G S+
Sbjct: 21 YIVIFGCGRLGSLIANLASSSGHSVV 46
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 26.9 bits (60), Expect = 8.8
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 144 STLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN----------V 193
S L GK+V IVG G+ G + G I+Y RK+ +
Sbjct: 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTY 92
Query: 194 SGLAADSDVLIVCCALT-EETHHMINKDVMTALGKEG 229
L +D++I LT ++ H + + V + K+G
Sbjct: 93 EELIPQADLVIN---LTPDKQHSDVVRTVQPLM-KDG 125
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.5 bits (59), Expect = 9.1
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 148 GKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYANVSGLAADSDVLIVC 206
K V + G G +G A+ L G I+ + +A + A++DV+IV
Sbjct: 22 HKIVIVGGYGKLGGLFARYLRASGYPIS--------ILDREDWAVAESILANADVVIVS 72
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 26.8 bits (60), Expect = 9.5
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKK-------------KPGVSYPFYA-NVSG 195
++GI+G GS+G A L + T R++ K G + +
Sbjct: 4 KIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTS 63
Query: 196 LAADSDVLIVCC 207
+ +D D+L+V
Sbjct: 64 INSDFDLLVVTV 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 9.5
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 81 IDHVDLQECRRRGIL-------VTNAGNAFSEDGADYVVGLLVDVLRRVSSIDRFVRNGL 133
D D+Q+ + IL + + +A G + L+ ++ + +FV L
Sbjct: 33 FDCKDVQD-MPKSILSKEEIDHIIMSKDA--VSGTLRLFWTLLS--KQEEMVQKFVEEVL 87
Query: 134 WPDHG 138
++
Sbjct: 88 RINYK 92
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 26.7 bits (60), Expect = 9.6
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 148 GKRVGIVGLGSIGSEVAKRLV 168
+++GI+GLG++G+ VA L+
Sbjct: 1 ARKIGIIGLGNVGAAVAHGLI 21
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 27.0 bits (59), Expect = 9.7
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 117 DVLRRVSSIDRFVRNGLWPDHGAYPLGSTLGGKRVGIVGLGSIGSEVA 164
V R + R + + +H A S+ ++ I+G G +E
Sbjct: 196 QVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAF 243
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 26.5 bits (59), Expect = 9.8
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 150 RVGIVGLGSIGSEVAKRLVPFGCS-IAY--TSRKKKP----GVSYPFYANVSGLAADSDV 202
V ++GLG++G+ +A+ L+ G + + K G +V + S
Sbjct: 11 DVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHL--CESVKAALSASPA 68
Query: 203 LIVCCALTEETHHMINKDVMTALGKEGVIINVGRGALID 241
I L + N LG GV + ++D
Sbjct: 69 TIFV--LLD------NHATHEVLGMPGVARALAHRTIVD 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.433
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,422,867
Number of extensions: 273328
Number of successful extensions: 1158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1072
Number of HSP's successfully gapped: 194
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.6 bits)