BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043241
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A3Q|A Chain A, X-Ray Structure Of Protein From Mus Musculus Mm.29898
pdb|2A3Q|B Chain B, X-Ray Structure Of Protein From Mus Musculus Mm.29898
pdb|2Q4P|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Mus Musculus Mm.29898
pdb|2Q4P|B Chain B, Ensemble Refinement Of The Crystal Structure Of Protein
From Mus Musculus Mm.29898
Length = 170
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 46/73 (63%)
Query: 54 FAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDA 113
A+VGEVGEL+E+FQW+ + + G W ++ L EELSDVL+YL+ LA C +DL A
Sbjct: 58 LALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQA 117
Query: 114 ATKKIVKNAIKYP 126
K N +YP
Sbjct: 118 VISKXDTNRQRYP 130
>pdb|2OIE|A Chain A, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|B Chain B, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|C Chain C, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIE|D Chain D, Crystal Structure Of Rs21-C6 Core Segment Rscut
pdb|2OIG|A Chain A, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|B Chain B, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|C Chain C, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
pdb|2OIG|D Chain D, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
Complex
Length = 111
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 54 FAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDA 113
A+VGEVGEL+E+FQW+ + + G W ++ L EELSDVL+YL+ LA C +DL A
Sbjct: 43 LALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQA 102
Query: 114 ATKKIVKN 121
K+ N
Sbjct: 103 VISKMDTN 110
>pdb|3OBC|A Chain A, Crystal Structure Of A Pyrophosphatase (Af1178) From
Archaeoglobus Fulgidus At 1.80 A Resolution
pdb|3OBC|B Chain B, Crystal Structure Of A Pyrophosphatase (Af1178) From
Archaeoglobus Fulgidus At 1.80 A Resolution
Length = 118
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 59 EVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKI 118
EV EL EIFQW D+ E E + EE++DVL+YL+ L D+ I+ +A +K
Sbjct: 45 EVAELLEIFQWTRSSDEEFEVLERRKGE-VEEEIADVLIYLLFLCDVAEINPIEAVKRKX 103
Query: 119 VKNAIKYPPNR 129
KN KYP NR
Sbjct: 104 EKNERKYPKNR 114
>pdb|2Q73|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q73|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q73|C Chain C, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q73|D Chain D, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P41212)
pdb|2Q9L|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
pdb|2Q9L|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
pdb|2Q9L|C Chain C, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
pdb|2Q9L|D Chain D, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
(P43212)
Length = 100
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 54 FAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDA 113
F ++ EVGELSE + +G+ G P D K + EEL DVL Y+ LA+I G++L
Sbjct: 25 FKLIEEVGELSESIR-KGK--SGQPTL-DELKGSVAEELYDVLYYVCALANIHGVNLEKT 80
Query: 114 ATKKIVKNAIKY 125
K V N +KY
Sbjct: 81 HELKEVLNKVKY 92
>pdb|2Q5Z|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ntag-Imazg
(P43212)
pdb|2Q5Z|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ntag-Imazg
(P43212)
Length = 114
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 54 FAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDA 113
F ++ EVGELSE + +G+ G P D K + EEL DVL Y+ LA+I G++L
Sbjct: 45 FKLIEEVGELSESIR-KGK--SGQPTL-DELKGSVAEELYDVLYYVCALANIHGVNLEKT 100
Query: 114 ATKKIVKNAIKY 125
K V N +KY
Sbjct: 101 RELKEVLNKVKY 112
>pdb|1VMG|A Chain A, Crystal Structure Of Mazg Nucleotide Pyrophosphohydrolase
(13816655) From Sulfolobus Solfataricus At 1.46 A
Resolution
Length = 95
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 13/62 (20%)
Query: 56 MVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAAT 115
+V EVGEL+E L N + + + EEL+DV+ + + +A++ GID+ +A
Sbjct: 44 LVEEVGELAEAL---------LSN----NLDSIQEELADVIAWTVSIANLEGIDIEEALK 90
Query: 116 KK 117
KK
Sbjct: 91 KK 92
>pdb|2JPB|A Chain A, Solution Structure Of Ompr-C Dna Binding Protein
Length = 104
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 12 VGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEE 53
V H R ++ N+ G E +A ER +D+ + L + +EE
Sbjct: 38 VSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 79
>pdb|1OPC|A Chain A, Ompr Dna-Binding Domain, Escherichia Coli
Length = 110
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 12 VGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEE 53
V H R ++ N+ G E +A ER +D+ + L + +EE
Sbjct: 44 VSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 85
>pdb|1ODD|A Chain A, Ompr C-terminal Domain (ompr-c) From Escherichia Coli
Length = 118
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 12 VGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEE 53
V H R ++ N+ G E +A ER +D+ + L + +EE
Sbjct: 52 VSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 93
>pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
pdb|3KEW|B Chain B, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
Length = 241
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 79 NWE---DADKEHLGEELSDVLLYLIRLADICGIDLG 111
+WE D ++HLG+ L Y + A+ CG LG
Sbjct: 87 DWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLG 122
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 18 IADSEEAK-----NMREGEEINAD---ERVMDISLKDLSKQLEEFAMVGEV------GEL 63
I D+E A +R G++I E+ DIS+KDL K++++ A ++ L
Sbjct: 35 IGDNEAASIYARAKIRRGKKIGIAVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPL 94
Query: 64 SEIFQWRGEVDKGLPNWEDAD 84
+ F + E+ + +P ++D D
Sbjct: 95 PKGFDYY-EIVRNIPYYKDVD 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,924,478
Number of Sequences: 62578
Number of extensions: 155922
Number of successful extensions: 323
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 32
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)