Query 043241
Match_columns 132
No_of_seqs 141 out of 1086
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03819 MazG: MazG nucleotide 99.6 5.2E-16 1.1E-20 103.2 6.9 61 55-128 9-73 (74)
2 COG1694 MazG Predicted pyropho 99.1 1.1E-10 2.5E-15 81.6 6.5 62 55-128 34-99 (102)
3 PRK09562 mazG nucleoside triph 99.1 2.4E-10 5.2E-15 92.7 7.6 61 55-128 40-104 (262)
4 PRK09562 mazG nucleoside triph 99.0 1.1E-09 2.4E-14 88.8 7.0 60 55-127 170-229 (262)
5 TIGR00444 mazG MazG family pro 99.0 1.6E-09 3.4E-14 87.4 7.2 61 55-126 159-219 (248)
6 PF12643 MazG-like: MazG-like 98.9 3.4E-09 7.3E-14 74.7 6.9 59 62-127 18-79 (98)
7 TIGR00444 mazG MazG family pro 98.7 4.1E-08 8.8E-13 79.2 7.6 61 55-128 26-90 (248)
8 PF01503 PRA-PH: Phosphoribosy 98.6 1.5E-06 3.2E-11 58.7 10.3 82 12-120 1-82 (83)
9 PRK12334 nucleoside triphospha 98.5 2.4E-07 5.2E-12 75.9 5.8 60 55-127 92-157 (277)
10 PLN02346 histidine biosynthesi 98.3 2.6E-06 5.7E-11 69.5 7.0 56 55-126 201-256 (271)
11 COG3956 Protein containing tet 98.0 3E-05 6.4E-10 66.0 8.1 43 84-126 413-455 (488)
12 PRK12334 nucleoside triphospha 97.9 1.5E-05 3.2E-10 65.5 4.8 41 86-126 221-261 (277)
13 PRK12333 nucleoside triphospha 97.9 5.5E-05 1.2E-09 59.7 7.8 61 55-128 31-95 (204)
14 PRK12333 nucleoside triphospha 97.7 6.2E-05 1.4E-09 59.4 5.1 39 90-128 164-202 (204)
15 TIGR03188 histidine_hisI phosp 97.5 0.0012 2.6E-08 45.3 8.1 48 55-115 35-82 (84)
16 PRK00400 hisE phosphoribosyl-A 97.4 0.0014 3.1E-08 46.7 8.2 54 55-125 39-92 (105)
17 COG0140 HisI Phosphoribosyl-AT 97.3 0.0028 6E-08 44.3 8.4 49 55-116 35-83 (92)
18 PRK02759 bifunctional phosphor 96.9 0.0061 1.3E-07 48.2 8.1 49 55-116 150-198 (203)
19 PHA02602 56 dCTP pyrophosphata 96.4 0.02 4.2E-07 44.0 7.7 44 80-123 120-163 (172)
20 PF08761 dUTPase_2: dUTPase; 96.3 0.0053 1.1E-07 46.4 3.7 54 55-113 41-95 (167)
21 PF04447 DUF550: Protein of un 95.2 0.041 8.9E-07 39.0 4.5 39 90-128 42-84 (100)
22 COG3956 Protein containing tet 94.3 0.19 4E-06 43.3 7.0 61 55-128 264-328 (488)
23 COG4508 Dimeric dUTPase [Carbo 89.4 0.86 1.9E-05 34.4 4.8 45 55-107 35-83 (161)
24 KOG4311 Histidinol dehydrogena 88.2 1.5 3.2E-05 36.7 5.9 54 55-124 278-331 (359)
25 COG4696 Uncharacterized protei 84.8 2.5 5.4E-05 32.4 5.1 46 84-129 91-137 (180)
26 COG4997 Uncharacterized conser 72.6 12 0.00026 26.1 4.9 36 89-124 54-89 (95)
27 TIGR02899 spore_safA spore coa 67.0 5.3 0.00012 22.1 2.0 22 93-117 4-25 (44)
28 PRK13858 type IV secretion sys 61.3 69 0.0015 24.2 7.6 72 22-98 43-124 (147)
29 PF10543 ORF6N: ORF6N domain; 54.3 23 0.0005 23.9 3.7 30 99-129 15-44 (88)
30 PF08913 VBS: Vinculin Binding 51.7 85 0.0018 22.9 6.5 58 55-117 40-100 (125)
31 PHA02591 hypothetical protein; 46.2 18 0.00038 24.8 2.0 33 82-114 45-77 (83)
32 cd07644 I-BAR_IMD_BAIAP2L2 Inv 41.4 24 0.00052 28.3 2.4 31 87-117 61-91 (215)
33 PRK13710 plasmid maintenance p 35.2 68 0.0015 21.2 3.5 27 99-125 13-39 (72)
34 PF08761 dUTPase_2: dUTPase; 34.4 82 0.0018 23.5 4.3 34 90-123 125-158 (167)
35 PF12844 HTH_19: Helix-turn-he 31.6 44 0.00095 20.3 2.1 19 96-114 41-59 (64)
36 PF13443 HTH_26: Cro/C1-type H 29.8 36 0.00078 20.6 1.5 19 96-114 40-58 (63)
37 PF07362 CcdA: Post-segregatio 29.7 61 0.0013 21.3 2.6 26 99-124 13-38 (72)
38 PF12651 RHH_3: Ribbon-helix-h 29.7 1.2E+02 0.0027 17.7 4.6 29 98-126 16-44 (44)
39 cd07645 I-BAR_IMD_BAIAP2L1 Inv 29.5 48 0.0011 26.7 2.4 29 88-116 62-90 (226)
40 COG5435 Uncharacterized conser 28.8 34 0.00074 25.9 1.4 35 2-54 34-68 (147)
41 PF13413 HTH_25: Helix-turn-he 27.3 80 0.0017 19.9 2.8 21 93-113 42-62 (62)
42 PF01527 HTH_Tnp_1: Transposas 26.0 1.1E+02 0.0024 19.0 3.3 33 81-113 8-40 (76)
43 PF12668 DUF3791: Protein of u 25.8 1.1E+02 0.0023 19.1 3.2 22 95-116 4-25 (62)
44 PF00984 UDPG_MGDP_dh: UDP-glu 25.4 75 0.0016 21.8 2.6 29 85-120 18-46 (96)
45 PF01476 LysM: LysM domain; I 24.9 73 0.0016 17.7 2.1 19 99-117 9-27 (44)
46 PF13318 DUF4089: Protein of u 23.7 73 0.0016 19.5 2.0 27 98-124 1-27 (50)
47 PF12864 DUF3822: Protein of u 23.2 44 0.00096 26.4 1.2 23 90-112 204-226 (253)
48 TIGR02384 RelB_DinJ addiction 22.9 1.3E+02 0.0029 20.0 3.4 24 100-123 18-41 (83)
49 PF12221 HflK_N: Bacterial mem 22.9 1.1E+02 0.0024 18.2 2.6 20 108-127 21-40 (42)
50 COG3784 Uncharacterized protei 22.5 1.6E+02 0.0035 21.1 3.8 30 100-129 68-97 (109)
51 PF06892 Phage_CP76: Phage reg 22.4 3.4E+02 0.0074 20.3 8.5 89 12-104 34-141 (162)
52 PF05960 DUF885: Bacterial pro 22.4 1.3E+02 0.0027 26.2 3.9 48 7-54 501-548 (549)
53 PF13326 PSII_Pbs27: Photosyst 22.3 2.5E+02 0.0054 20.9 5.0 36 55-95 105-141 (145)
54 PRK11235 bifunctional antitoxi 22.2 2.2E+02 0.0048 19.1 4.3 29 100-128 17-47 (80)
55 PF08580 KAR9: Yeast cortical 21.3 87 0.0019 29.0 2.8 16 84-99 257-272 (683)
56 COG3079 Uncharacterized protei 20.9 3.4E+02 0.0075 21.2 5.6 44 55-102 122-165 (186)
57 PF06262 DUF1025: Possibl zinc 20.9 1.6E+02 0.0034 20.4 3.5 27 85-113 66-92 (97)
58 cd00118 LysM Lysin domain, fou 20.3 1.3E+02 0.0029 15.3 2.5 19 100-118 12-30 (46)
No 1
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=99.64 E-value=5.2e-16 Score=103.18 Aligned_cols=61 Identities=48% Similarity=0.743 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADI----CGIDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~----lgIDLeea~~~k~~K~~~Ry~~~ 128 (132)
+|.+|+|||++++++ .+.+++.+|||||||+++.+|+. +|+|+++++.++++|+.+|||+.
T Consensus 9 ~l~eE~~El~~ai~~-------------~~~~~l~eElgDvl~~l~~la~~~~~~~~idle~~~~~~~~K~~~R~p~~ 73 (74)
T PF03819_consen 9 KLIEEVGELAEAIRK-------------EDRENLEEELGDVLFYLLQLARILEERLGIDLEEALERKMEKLERRYPHV 73 (74)
T ss_dssp HHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHHCHTTSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHHHhccCCCC
Confidence 899999999999984 25679999999999999999997 99999999999999999999963
No 2
>COG1694 MazG Predicted pyrophosphatase [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=81.57 Aligned_cols=62 Identities=35% Similarity=0.402 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHH----HHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKI----VKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~----~K~~~Ry~~~ 128 (132)
.+++|+|||++++++. .+.+++++|||||||+++.+|+.+++|++.++..++ .|+.+|+|+.
T Consensus 34 ~l~eE~gEv~eai~~~------------~~~~~l~eELgDvL~~v~~~a~~~~~~~~~~~~~v~~~~~~k~~rr~p~~ 99 (102)
T COG1694 34 YLVEEAGEVAEAIRKE------------EDLEDLKEELGDVLADVLFLANLLDIDLEFALEEVVRKIAEKLERRHPHV 99 (102)
T ss_pred HHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcccc
Confidence 8999999999999842 167899999999999999999999998866655555 4666777765
No 3
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.11 E-value=2.4e-10 Score=92.66 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADIC----GIDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~l----gIDLeea~~~k~~K~~~Ry~~~ 128 (132)
.|.+|++||.+++.. .+.+++.+|||||||.++.+|+.+ ++|+++++....+|+.+|||+-
T Consensus 40 ~l~EE~~El~~ai~~-------------~d~~~l~eElGDvL~~vv~~a~~~~e~~~~d~e~vl~~~~~K~~~R~p~v 104 (262)
T PRK09562 40 YTIEEAYEVVDAIER-------------GDLDDLREELGDLLLQVVFHAQMAEEQGAFDFADVVEAISDKLIRRHPHV 104 (262)
T ss_pred HHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhchhh
Confidence 789999999999972 257899999999999999999999 8999999999999999999964
No 4
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=98.99 E-value=1.1e-09 Score=88.77 Aligned_cols=60 Identities=30% Similarity=0.400 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYPP 127 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~~ 127 (132)
.+.+|++||.+++.. .+.+++.+||||+||.++.+|+.+|||+++++.....|+.+|||.
T Consensus 170 kl~EE~~El~~Ai~~-------------~~~~~l~eElGDlLf~lv~lAr~~~id~E~aL~~a~~Kf~rR~~~ 229 (262)
T PRK09562 170 KVEEEIDELKEALAQ-------------GDQAKIEEEFGDLLFALVNLARHLGIDPEAALRKANAKFERRFRA 229 (262)
T ss_pred HHHHHHHHHHHHHHc-------------cChhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhHHH
Confidence 889999999999872 256889999999999999999999999999999999999999983
No 5
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=98.97 E-value=1.6e-09 Score=87.40 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYP 126 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~ 126 (132)
.+.+|++||.+++... +.+.+++.+||||+||.|+++|+.+|||++.|+.+.+.||.+||.
T Consensus 159 k~~EE~~El~~a~~~~-----------~~~~~~ieeElGDlLFalvnlAr~~giDpE~ALr~a~~KF~~Rf~ 219 (248)
T TIGR00444 159 KVYEELDEVMYEARQA-----------VVEQNKLEEEMGDLLFATVNLARHLKTDAEIALQKANEKFERRFR 219 (248)
T ss_pred HHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999998621 235678999999999999999999999999999999999999986
No 6
>PF12643 MazG-like: MazG-like family
Probab=98.93 E-value=3.4e-09 Score=74.71 Aligned_cols=59 Identities=44% Similarity=0.735 Sum_probs=51.1
Q ss_pred HHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhcCCC
Q 043241 62 ELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGID---LGDAATKKIVKNAIKYPP 127 (132)
Q Consensus 62 ELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgID---Leea~~~k~~K~~~Ry~~ 127 (132)
++++.|+|... | .+..++++.+|||||+.|+..+|+++|+| +++++..|+.++...||.
T Consensus 18 el~elfq~~~~---~----~~~~~e~i~deLAdvii~~ylLa~rLGid~~~lD~~i~~KL~~~~~k~~~ 79 (98)
T PF12643_consen 18 ELLELFQWLTS---G----SEVAQEAIKDELADVIIYCYLLADRLGIDFRELDEIIKEKLKKNIEKYPV 79 (98)
T ss_pred HHHHHHhhccc---C----cchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcccccch
Confidence 56667888643 2 23467999999999999999999999999 999999999999999997
No 7
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=98.73 E-value=4.1e-08 Score=79.24 Aligned_cols=61 Identities=28% Similarity=0.277 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHH---HHHhC-CCHHHHHHHHHHHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRL---ADICG-IDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~l---A~~lg-IDLeea~~~k~~K~~~Ry~~~ 128 (132)
.+.+|+.||.+++.. .+.+++.+||||+|+.++.+ |+..| +|+++++....+|+.+|+|+-
T Consensus 26 ~l~EE~~El~~Ai~~-------------~d~~~l~eELGDlL~qvv~~a~iar~~g~f~~edvl~~~~~K~irRhphV 90 (248)
T TIGR00444 26 YTLEETYEVLEAIAR-------------EDFDDLREELGDLLLQVVFYAQMAQEEGYFDFDDVCAGISEKLVRRHPHV 90 (248)
T ss_pred HHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchhh
Confidence 788999999999972 35789999999999999988 58999 999999999999999999964
No 8
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=98.56 E-value=1.5e-06 Score=58.74 Aligned_cols=82 Identities=27% Similarity=0.366 Sum_probs=58.2
Q ss_pred hhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhh
Q 043241 12 VGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEFAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEE 91 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eE 91 (132)
|.+|++.+..+.....+.. .....+ .++. .+.+|++|+..+.+ ..++.++.+|
T Consensus 1 v~ef~~~~~~~~~~~p~~~---~~~l~~---------~~~~--kl~EE~~E~~~A~~-------------~~d~~~~~~e 53 (83)
T PF01503_consen 1 VEEFHRTIDQRKKEAPEGS---TKELLD---------LRLK--KLGEEAGELIEAAK-------------NGDKEEVADE 53 (83)
T ss_dssp HHHHHHHHHHCCHSSTTTH---HHHHHH---------HHHH--HHHHHHHHHHHHHH-------------CSHHHHHHHH
T ss_pred CHHHHHHHHhHhhCCCCCC---cHHHHH---------HHHH--HHHHHHHHHHHHHH-------------cCCHHHHHHH
Confidence 4667777776666544433 111111 1222 88999999999987 2378999999
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043241 92 LSDVLLYLIRLADICGIDLGDAATKKIVK 120 (132)
Q Consensus 92 LgDvL~yL~~lA~~lgIDLeea~~~k~~K 120 (132)
+||+++.++.++...|||+++++..-...
T Consensus 54 ~aDlly~~~~~~~~~gi~~~~v~~ev~~~ 82 (83)
T PF01503_consen 54 LADLLYHLLGLLASMGIDLDEVFDEVHRR 82 (83)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 99999999999999999999998765443
No 9
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=98.49 E-value=2.4e-07 Score=75.91 Aligned_cols=60 Identities=30% Similarity=0.362 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHH------HHHHHHHHHHhhcCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLG------DAATKKIVKNAIKYPP 127 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLe------ea~~~k~~K~~~Ry~~ 127 (132)
.|.+|+.|+.+++. .++.+++.+||||+|+.++.+|+.+++|.+ +++....+|+.+|+|+
T Consensus 92 ~l~EE~~El~eAI~-------------~~d~~~l~EELGDlLfqVvf~Aria~~~~e~~F~~~dvl~~~~~KfirRhPh 157 (277)
T PRK12334 92 YLLEETYELLDAIE-------------SGDRDELREELGDVLLQVLFHARIAEEAPEDPFDIDDVAATLVAKLVRRHPH 157 (277)
T ss_pred HHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHhHH
Confidence 78999999999997 235689999999999999999999977665 7999999999999985
No 10
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=98.27 E-value=2.6e-06 Score=69.53 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYP 126 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~ 126 (132)
++.+|++|++.+.++ ..+++++.+|+||+|++++.++...||++++++ .++.+|+.
T Consensus 201 KlgEEA~EliiAa~~------------~~dre~lieElADLLyHlLVLl~~~GIsleeV~----~eL~~R~~ 256 (271)
T PLN02346 201 KIREEAGELCQTLEE------------NEGKERTASEMADVLYHAMVLLAKQGVKMEDVL----EVLRKRFS 256 (271)
T ss_pred HHHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH----HHHHHhhc
Confidence 899999999988642 236899999999999999999999999999998 46777764
No 11
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=98.00 E-value=3e-05 Score=65.95 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=41.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 043241 84 DKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYP 126 (132)
Q Consensus 84 ~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~ 126 (132)
.++++++|+||+||.++++|+.++||.++|+...++||.+||.
T Consensus 413 h~~~~a~efgd~lf~lvniarfy~i~~eeal~~tndkf~rrf~ 455 (488)
T COG3956 413 HRDRIAEEFGDLLFSLVNIARFYDIDSEEALNYTNDKFIRRFY 455 (488)
T ss_pred hHHHHHHHhhhhhhhhhhHHHHhcCCHHHHHhhhHHHHHHHHH
Confidence 5789999999999999999999999999999999999999974
No 12
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=97.91 E-value=1.5e-05 Score=65.49 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=39.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 043241 86 EHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYP 126 (132)
Q Consensus 86 e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~ 126 (132)
.++++||||+||.++++|+.+|||+|.+++....||.+||.
T Consensus 221 ~~~e~e~GdlLf~lv~~ar~~~idpE~aLr~a~~kf~~rf~ 261 (277)
T PRK12334 221 EDSEDELGALLLALVAVAVAAGVDAEAALRAAVRDFRDRIR 261 (277)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999985
No 13
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=97.91 E-value=5.5e-05 Score=59.69 Aligned_cols=61 Identities=25% Similarity=0.251 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADIC----GIDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~l----gIDLeea~~~k~~K~~~Ry~~~ 128 (132)
-|.+|+-||.++|.. ++.+++.+||||+|+-++-.|... .+++++++..-.+|+.+|.|+-
T Consensus 31 yllEE~yEv~dAI~~-------------~d~~~l~EELGDlLlqVvfha~iaee~g~F~~~DV~~~i~~KlirRHPHV 95 (204)
T PRK12333 31 YLLEEAAEAVDALSE-------------GDPQELAEELGDVLLQVAFHSVIAEEEGRFTYPDVERGIVEKLIRRHPHV 95 (204)
T ss_pred HHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcc
Confidence 688999999999972 357899999999998776555443 4699999999999999999964
No 14
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=97.71 E-value=6.2e-05 Score=59.37 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCC
Q 043241 90 EELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 90 eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~~~ 128 (132)
.|+||+||.++++|+.+|||++.|+++.+.||..+.|..
T Consensus 164 ~E~GDlLFalvn~aR~~~idpE~ALr~an~Kf~~~~~~~ 202 (204)
T PRK12333 164 GGVAEALWAVVAWARAEGIDPEIALRERTEKACAQLPDE 202 (204)
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCccc
Confidence 399999999999999999999999999999999988764
No 15
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=97.45 E-value=0.0012 Score=45.32 Aligned_cols=48 Identities=29% Similarity=0.305 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAAT 115 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~ 115 (132)
++.+|+.|+.-+.+ .++++++..|.||+++-++.+....||+++++++
T Consensus 35 KvgEEa~E~iiAa~-------------~~d~~~~~~E~ADLlYHllVlL~~~gi~~~dV~~ 82 (84)
T TIGR03188 35 KVGEEAVEVVIAAK-------------NGDKEELVYEAADLLYHLLVLLAAQGVSLEDVLA 82 (84)
T ss_pred HHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 89999999988876 2367899999999999999999999999999975
No 16
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=97.40 E-value=0.0014 Score=46.72 Aligned_cols=54 Identities=28% Similarity=0.303 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKY 125 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry 125 (132)
.+.+|+.|+.-+.+ .++++++..|.||+++.++.+....||+++++... +.+|+
T Consensus 39 KlgEEa~E~i~A~~-------------~~d~~~~i~E~ADLlYHllVlL~~~gv~~~dV~~e----L~~R~ 92 (105)
T PRK00400 39 KVGEEATEVVIAAK-------------DGDREELVYEIADLLYHLLVLLAARGISLEDVLAE----LERRE 92 (105)
T ss_pred HHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH----HHHHc
Confidence 89999999998886 24689999999999999999999999999999754 45554
No 17
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0028 Score=44.33 Aligned_cols=49 Identities=31% Similarity=0.327 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATK 116 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~ 116 (132)
++.+|++|+.-+-+ .+++++|..|.+|.++.++.+....||++++++..
T Consensus 35 KvGEEa~E~~iAa~-------------~~d~e~l~~E~ADLlYH~lVlL~~~gv~l~dV~~e 83 (92)
T COG0140 35 KVGEEAVEVILAAK-------------DEDKEELVSEAADLLYHLLVLLAAQGLSLEDVLRE 83 (92)
T ss_pred HHhHHHHHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 88999999977665 23688999999999999999999999999999764
No 18
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=96.92 E-value=0.0061 Score=48.16 Aligned_cols=49 Identities=29% Similarity=0.306 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATK 116 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~ 116 (132)
++.+|+.|++-+.+ .++++++..|.||+++-++.+....||+++++.+.
T Consensus 150 KvgEEA~E~iiAak-------------~~d~~~li~E~ADLlYHllVlL~~~gv~l~dV~~e 198 (203)
T PRK02759 150 KVGEEAVEVVLAAK-------------NNDKEELINEAADLLYHLLVLLADQGLSLSDVIAE 198 (203)
T ss_pred HHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999998876 24689999999999999999999999999998753
No 19
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=96.45 E-value=0.02 Score=43.97 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=40.5
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 043241 80 WEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAI 123 (132)
Q Consensus 80 ~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~ 123 (132)
++|+++.++..||-|++.++++.+..+|++.++++..-+.||.-
T Consensus 120 ls~eD~le~k~ElID~~HF~l~~~~~LG~t~eeI~~aY~~KN~l 163 (172)
T PHA02602 120 LSPEDQLEIKFELIDQLHFVLNKFIALGMDAEEIFKLYYLKNAE 163 (172)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhHH
Confidence 46788889999999999999999999999999999998888875
No 20
>PF08761 dUTPase_2: dUTPase; InterPro: IPR014871 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (3.6.1.23 from EC). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4. ; PDB: 2YB0_E 2YAZ_B 2YAY_A 2CJE_A 1OGK_A 1OGL_A 1W2Y_B 2CIC_A.
Probab=96.26 E-value=0.0053 Score=46.38 Aligned_cols=54 Identities=28% Similarity=0.355 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHH-hcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHH
Q 043241 55 AMVGEVGELSEIFQ-WRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDA 113 (132)
Q Consensus 55 ~L~~EvGELae~~k-~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea 113 (132)
+|..|+||+++..+ |+-.... .+.+++.+.+|+.|++..++.++..+|++....
T Consensus 41 Al~vE~~El~ne~~~fK~Wk~~-----~~~~~~~ileE~vD~lHF~lS~~~~~~~~~~~~ 95 (167)
T PF08761_consen 41 ALIVELGELANETRCFKYWKKK-----KPVDKEKILEEYVDILHFLLSIGLELNYDDEKE 95 (167)
T ss_dssp HHHHHHHHHHTTS----SSSST-----T---HHHHHHHHHHHHHHHHHHHHHHHCT-GGG
T ss_pred HHHHHHHHHHHHHcchHhhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHHcCCchhhh
Confidence 89999999998873 4333221 246789999999999999999999999988774
No 21
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=95.21 E-value=0.041 Score=38.98 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHhhc-CCCC
Q 043241 90 EELSDVLLYLIRLADICGIDLG---DAATKKIVKNAIK-YPPN 128 (132)
Q Consensus 90 eELgDvL~yL~~lA~~lgIDLe---ea~~~k~~K~~~R-y~~~ 128 (132)
.|-+||++.+..-+.+.|+..+ +|+..|+++|+.| ||.-
T Consensus 42 ~EwaDv~~Ll~D~~~RaGis~~~i~~A~~~K~~iN~aR~Wp~~ 84 (100)
T PF04447_consen 42 SEWADVQILLWDGARRAGISPEQIIDAMEAKLAINKARQWPDW 84 (100)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCC
Confidence 3999999999999999999765 4677888999888 6643
No 22
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=94.26 E-value=0.19 Score=43.32 Aligned_cols=61 Identities=31% Similarity=0.404 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH---hC-CCHHHHHHHHHHHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADI---CG-IDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~---lg-IDLeea~~~k~~K~~~Ry~~~ 128 (132)
-|.+|.=|+.+++. +++-.++.+||||||+.++--|.. -| +++++++..--+|..+|.|+-
T Consensus 264 yliEE~yEl~EAId-------------~edddhmvEELGDvLlQVllHaqIGkdeGyf~I~dVI~~i~~KMIrRHPHv 328 (488)
T COG3956 264 YLIEECYELLEAID-------------EEDDDHMVEELGDVLLQVLLHAQIGKDEGYFNINDVISGISEKMIRRHPHV 328 (488)
T ss_pred HHHHHHHHHHHHhh-------------ccchHhHHHHHHHHHHHHHHHHhhcccCCeeeHHHHHHHHHHHHHHhCccc
Confidence 78899999999886 346689999999999988766643 22 589999999999999999974
No 23
>COG4508 Dimeric dUTPase [Carbohydrate transport and metabolism]
Probab=89.44 E-value=0.86 Score=34.36 Aligned_cols=45 Identities=31% Similarity=0.439 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHH----hcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhC
Q 043241 55 AMVGEVGELSEIFQ----WRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICG 107 (132)
Q Consensus 55 ~L~~EvGELae~~k----~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lg 107 (132)
+|..|+||||...+ |.. . .|.+...+.||-.|+|.+++.+.-.+.
T Consensus 35 AL~Ve~gELAnetrcFkYW~~---~-----~p~~~~~ilEEY~dglHF~lsigl~~~ 83 (161)
T COG4508 35 ALLVEVGELANETRCFKYWKL---S-----KPIDLAKILEEYSDGLHFLLSIGLYYQ 83 (161)
T ss_pred HHHHHHHHHhhhhhHHHhhhh---c-----CCCcHHHHHHHHhhhHHHHHHhHHHHH
Confidence 88999999997654 432 1 366789999999999999998875543
No 24
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=88.23 E-value=1.5 Score=36.65 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIK 124 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~R 124 (132)
.+.+|+.||.++.-+ +++.-|+||+|.+-+.++-.-|+.|+++.+.-.-|-+++
T Consensus 278 KI~EEAeELc~a~~k----------------~e~~wEmADl~YfA~~~lv~~gVsl~Dv~~~LnmkhrKv 331 (359)
T KOG4311|consen 278 KIREEAEELCRALEK----------------NETPWEMADLLYFAMVLLVKRGVSLEDVLEVLNMKHRKV 331 (359)
T ss_pred HHHHHHHHHHHhhcc----------------cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHhhhHHHhH
Confidence 888999999887542 336778999999999999999999998876544343433
No 25
>COG4696 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.84 E-value=2.5 Score=32.39 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=36.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc-CCCCC
Q 043241 84 DKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIK-YPPNR 129 (132)
Q Consensus 84 ~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~R-y~~~~ 129 (132)
+.--..++|+|+|.+.-.--..+|||++.++..--.-|..+ ||.|+
T Consensus 91 dL~gqvdalaDlLYfTYGslvlmGiDp~~iF~~VHrANm~KifpdGk 137 (180)
T COG4696 91 DLIGQVDALADLLYFTYGSLVLMGIDPDAIFAAVHRANMGKIFPDGK 137 (180)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhcCCHHHHHHHHHHhhhhhcCCCCc
Confidence 34556789999999988888899999999988777666655 66654
No 26
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=72.61 E-value=12 Score=26.08 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 043241 89 GEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIK 124 (132)
Q Consensus 89 ~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~R 124 (132)
.+||+|.|=.+..+|..+|.+-+........|-..|
T Consensus 54 lEeLadllEvi~~ia~a~gfske~l~~~R~~Kk~e~ 89 (95)
T COG4997 54 LEELADLLEVISRIAEARGFSKENLEALRLQKKLEK 89 (95)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999888777776655
No 27
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=67.02 E-value=5.3 Score=22.10 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH
Q 043241 93 SDVLLYLIRLADICGIDLGDAATKK 117 (132)
Q Consensus 93 gDvL~yL~~lA~~lgIDLeea~~~k 117 (132)
||.||. +|.++|++.++....|
T Consensus 4 gdtl~~---IA~~~~~~~~~l~~~N 25 (44)
T TIGR02899 4 GDTLWK---IAKKYGVDFDELIQAN 25 (44)
T ss_pred CCCHHH---HHHHHCcCHHHHHHHh
Confidence 566665 7889999998887655
No 28
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=61.32 E-value=69 Score=24.21 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=44.0
Q ss_pred hhccCCCchHHHHHhhhh-------ccCCHHHHHHHHHHh-hHHHHHHHHHHHHHhcccccCCCCCCC--cchhhhhhhh
Q 043241 22 EEAKNMREGEEINADERV-------MDISLKDLSKQLEEF-AMVGEVGELSEIFQWRGEVDKGLPNWE--DADKEHLGEE 91 (132)
Q Consensus 22 ~~~~~m~~~eYq~~a~~t-------~~~~~~~l~~~l~~f-~L~~EvGELae~~k~~~~~~~g~~~~~--~~~~e~l~eE 91 (132)
-....|+..||-+.+.+. +..+.+++...+..+ ++.+=+..|+..+... |..+.. ...|..+.+|
T Consensus 43 A~~aGlS~SEfIRqAi~~~~g~V~v~r~T~e~~~~lir~l~gianNLNQLAr~aN~~-----~~~~~~~l~~er~~~g~~ 117 (147)
T PRK13858 43 ARLLGLSDSMAIRVAVRRIGGFLEIDAETREKMEAILQSIGTLSSNIAALLSAYAEN-----PRPDLEALRAERIAFGKE 117 (147)
T ss_pred HHHcCCCHHHHHHHHHHhcCCeEeecccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHH
Confidence 344569999999999876 344555565566655 6666666666655421 211111 2457788899
Q ss_pred HHHHHHH
Q 043241 92 LSDVLLY 98 (132)
Q Consensus 92 LgDvL~y 98 (132)
++|.=-.
T Consensus 118 ~~~l~~~ 124 (147)
T PRK13858 118 FADLDGL 124 (147)
T ss_pred HHHHHHH
Confidence 9886433
No 29
>PF10543 ORF6N: ORF6N domain; InterPro: IPR018873 This entry represents an N-terminal DNA-binding domain found in a wide range of proteins from bacterial and eukaryotic DNA viruses and there bacterial homologues, they include the poxvirus D6R/N1R and baculoviral Bro protein families. The KilA-N domain is considered to be homologous to the fungal DNA-binding APSES domain. Both the KilA-N and APSES domains share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease []. This entry represents the amino-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018876 from INTERPRO.
Probab=54.28 E-value=23 Score=23.85 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhcCCCCC
Q 043241 99 LIRLADICGIDLGDAATKKIVKNAIKYPPNR 129 (132)
Q Consensus 99 L~~lA~~lgIDLeea~~~k~~K~~~Ry~~~~ 129 (132)
.-.||..+|++ ...+..+...|++||+.++
T Consensus 15 ~~~lA~~yg~~-~~~i~~~~~rN~~rF~eg~ 44 (88)
T PF10543_consen 15 DEDLAELYGVE-TKTINRNFKRNKDRFIEGK 44 (88)
T ss_pred HHHHHHHhCcC-HHHHHHHHHHHHHhCCCCC
Confidence 45789999999 6678899999999999664
No 30
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=51.66 E-value=85 Score=22.86 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhh---hhHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLG---EELSDVLLYLIRLADICGIDLGDAATKK 117 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~---eELgDvL~yL~~lA~~lgIDLeea~~~k 117 (132)
.|..+-++|+..-+-. .+.- .+++...+|. .+||+-.+-|+.-|-.+..+|++....+
T Consensus 40 ~lt~~y~~La~~~~~a----aat~-~~~ev~~~i~~~vq~LG~sc~~Lv~aag~~~~~P~d~~~k~ 100 (125)
T PF08913_consen 40 DLTHDYSQLAQDAKGA----AATT-PSAEVQNRIKSAVQDLGMSCIELVQAAGAVQSNPSDPYAKR 100 (125)
T ss_dssp HHHHHHHHHHHHHHHH----HCCS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCchhHHH
Confidence 6666777777655421 1110 1233444444 6799999999999999999998876433
No 31
>PHA02591 hypothetical protein; Provisional
Probab=46.24 E-value=18 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=28.9
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHH
Q 043241 82 DADKEHLGEELSDVLLYLIRLADICGIDLGDAA 114 (132)
Q Consensus 82 ~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~ 114 (132)
+++.-.++.||.+-=+..-++|..||++.+.+-
T Consensus 45 ~dd~~~vA~eL~eqGlSqeqIA~~LGVsqetVr 77 (83)
T PHA02591 45 EDDLISVTHELARKGFTVEKIASLLGVSVRKVR 77 (83)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHhCCCHHHHH
Confidence 456778999999999999999999999987653
No 32
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=41.39 E-value=24 Score=28.26 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 043241 87 HLGEELSDVLLYLIRLADICGIDLGDAATKK 117 (132)
Q Consensus 87 ~l~eELgDvL~yL~~lA~~lgIDLeea~~~k 117 (132)
....|||+||+-+..+.+.+..+++++++.-
T Consensus 61 ~~s~~LG~vLmqisev~r~i~~~le~~lk~F 91 (215)
T cd07644 61 LTSQSLGEILIQMSETQRKLSADLEVVFQTF 91 (215)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999987653
No 33
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=35.24 E-value=68 Score=21.22 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 043241 99 LIRLADICGIDLGDAATKKIVKNAIKY 125 (132)
Q Consensus 99 L~~lA~~lgIDLeea~~~k~~K~~~Ry 125 (132)
++..|+.+||++...+...+.+-.+|.
T Consensus 13 ll~~ar~~giNlS~~~e~~L~~~~~~~ 39 (72)
T PRK13710 13 SYQLLKAADVNISGLVNTAMQNEARRL 39 (72)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 567899999999999999888776653
No 34
>PF08761 dUTPase_2: dUTPase; InterPro: IPR014871 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (3.6.1.23 from EC). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4. ; PDB: 2YB0_E 2YAZ_B 2YAY_A 2CJE_A 1OGK_A 1OGL_A 1W2Y_B 2CIC_A.
Probab=34.43 E-value=82 Score=23.47 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 043241 90 EELSDVLLYLIRLADICGIDLGDAATKKIVKNAI 123 (132)
Q Consensus 90 eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~ 123 (132)
+.+-.++-.++.+|..+|++.+++...-+.||..
T Consensus 125 ~~~~~~~~~f~~l~~~lg~t~e~i~~aY~~KN~~ 158 (167)
T PF08761_consen 125 ESYQELFDLFLGLGELLGFTFEDIEKAYIEKNQV 158 (167)
T ss_dssp T-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4466777778999999999988777776666654
No 35
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=31.58 E-value=44 Score=20.26 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCCHHHHH
Q 043241 96 LLYLIRLADICGIDLGDAA 114 (132)
Q Consensus 96 L~yL~~lA~~lgIDLeea~ 114 (132)
...+..+|..+|||+++.+
T Consensus 41 ~~~l~~i~~~~~v~~~~l~ 59 (64)
T PF12844_consen 41 VSTLKKIAEALGVSLDELF 59 (64)
T ss_dssp HHHHHHHHHHHTS-HHHHC
T ss_pred HHHHHHHHHHhCCCHHHHh
Confidence 3456899999999998765
No 36
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=29.78 E-value=36 Score=20.57 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhCCCHHHHH
Q 043241 96 LLYLIRLADICGIDLGDAA 114 (132)
Q Consensus 96 L~yL~~lA~~lgIDLeea~ 114 (132)
+..+..||..||+++++.+
T Consensus 40 ~~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 40 LDTLEKIAKALNCSPEELF 58 (63)
T ss_dssp HHHHHHHHHHHT--HHHCT
T ss_pred HHHHHHHHHHcCCCHHHHh
Confidence 3567889999999998865
No 37
>PF07362 CcdA: Post-segregation antitoxin CcdA; InterPro: IPR009956 This entry consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein [].; PDB: 3HPW_C 2H3C_A 2H3A_B 2ADN_B 2ADL_B.
Probab=29.69 E-value=61 Score=21.27 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhc
Q 043241 99 LIRLADICGIDLGDAATKKIVKNAIK 124 (132)
Q Consensus 99 L~~lA~~lgIDLeea~~~k~~K~~~R 124 (132)
|+.-|+.+||++..++...+.+--++
T Consensus 13 Ll~~Ak~lgiNlS~~~e~aL~~~v~~ 38 (72)
T PF07362_consen 13 LLAEAKALGINLSATLEEALAEEVRR 38 (72)
T ss_dssp THHHHHHCT--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999888776654
No 38
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=29.66 E-value=1.2e+02 Score=17.74 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 043241 98 YLIRLADICGIDLGDAATKKIVKNAIKYP 126 (132)
Q Consensus 98 yL~~lA~~lgIDLeea~~~k~~K~~~Ry~ 126 (132)
-|-.+|...||+....+...++.+-++|.
T Consensus 16 ~L~~ls~~t~i~~S~Ll~eAle~~l~ky~ 44 (44)
T PF12651_consen 16 KLKELSEETGIPKSKLLREALEDYLEKYE 44 (44)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999888773
No 39
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=29.49 E-value=48 Score=26.74 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 043241 88 LGEELSDVLLYLIRLADICGIDLGDAATK 116 (132)
Q Consensus 88 l~eELgDvL~yL~~lA~~lgIDLeea~~~ 116 (132)
...||||||+-+....+.+...+++.+..
T Consensus 62 ~SkeLG~~L~qi~ev~r~i~~~le~~lK~ 90 (226)
T cd07645 62 VSKELGHVLMEISDVHKKLNDSLEENFKK 90 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999988888654
No 40
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=28.78 E-value=34 Score=25.86 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=25.5
Q ss_pred cceeeecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 2 AYSLVISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
+||+||| |+++.|.|++.+|...- +..+++.|-.|
T Consensus 34 ~~sfvIs-----------Rd~~~~g~~~~~y~~rq-------l~~l~k~Lpgy 68 (147)
T COG5435 34 GFSFVIS-----------RDPLEPGDTFPEYVQRQ-------LALLRKQLPGY 68 (147)
T ss_pred eeEEEEe-----------cCCCCCCCcHHHHHHHH-------HHHHHhhCCCe
Confidence 4677776 78999999999998765 34455555555
No 41
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=27.27 E-value=80 Score=19.88 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHH
Q 043241 93 SDVLLYLIRLADICGIDLGDA 113 (132)
Q Consensus 93 gDvL~yL~~lA~~lgIDLeea 113 (132)
.-+-.|+-.+|+.+|+|.+++
T Consensus 42 ~y~rg~lr~Ya~~Lgld~~~l 62 (62)
T PF13413_consen 42 VYARGYLRKYARFLGLDPDEL 62 (62)
T ss_dssp HHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhCcCcccC
Confidence 456789999999999998864
No 42
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=26.04 E-value=1.1e+02 Score=19.00 Aligned_cols=33 Identities=15% Similarity=-0.041 Sum_probs=23.1
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHH
Q 043241 81 EDADKEHLGEELSDVLLYLIRLADICGIDLGDA 113 (132)
Q Consensus 81 ~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea 113 (132)
+++.+..+..+.-.-=.-+..+|..+||++...
T Consensus 8 s~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l 40 (76)
T PF01527_consen 8 SPEFKLQAVREYLESGESVSEVAREYGISPSTL 40 (76)
T ss_dssp -HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHH
T ss_pred CHHHHHHHHHHHHHCCCceEeeecccccccccc
Confidence 466777777777444467889999999976554
No 43
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=25.76 E-value=1.1e+02 Score=19.11 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHH
Q 043241 95 VLLYLIRLADICGIDLGDAATK 116 (132)
Q Consensus 95 vL~yL~~lA~~lgIDLeea~~~ 116 (132)
+.+.+-.+|.++|++..+|+..
T Consensus 4 ~v~~Ie~~A~~~~~s~~ea~~~ 25 (62)
T PF12668_consen 4 VVFCIEEFAKKLNISGEEAYNY 25 (62)
T ss_pred HHHHHHHHHHHHCcCHHHHHHH
Confidence 4566778999999999999864
No 44
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=25.44 E-value=75 Score=21.77 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=20.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043241 85 KEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVK 120 (132)
Q Consensus 85 ~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K 120 (132)
+-.+..||+ .+|..+|+|..++...--.+
T Consensus 18 ~iaf~Nel~-------~lce~~giD~~~V~~~~~~d 46 (96)
T PF00984_consen 18 KIAFANELA-------RLCEKLGIDVYEVIEAANTD 46 (96)
T ss_dssp HHHHHHHHH-------HHHHHHTSBHHHHHHHHHTS
T ss_pred HHHHHHHHH-------HHHHHcCCCHHHHHHHHccC
Confidence 344555554 57999999999998765544
No 45
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=24.93 E-value=73 Score=17.68 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.5
Q ss_pred HHHHHHHhCCCHHHHHHHH
Q 043241 99 LIRLADICGIDLGDAATKK 117 (132)
Q Consensus 99 L~~lA~~lgIDLeea~~~k 117 (132)
|..||.++|++.++....|
T Consensus 9 l~~IA~~~~~~~~~l~~~N 27 (44)
T PF01476_consen 9 LWSIAKRYGISVDELMELN 27 (44)
T ss_dssp HHHHHHHTTS-HHHHHHHC
T ss_pred HHHHHhhhhhhHhHHHHhc
Confidence 4456889999999988876
No 46
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=23.72 E-value=73 Score=19.53 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 043241 98 YLIRLADICGIDLGDAATKKIVKNAIK 124 (132)
Q Consensus 98 yL~~lA~~lgIDLeea~~~k~~K~~~R 124 (132)
|+.+.+..+|+++.+....-+..|-.|
T Consensus 1 Yv~~~a~llgL~l~~~~r~~V~~n~~r 27 (50)
T PF13318_consen 1 YVDQMAALLGLPLDEEWRPGVVANFER 27 (50)
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 567788888888888877666555444
No 47
>PF12864 DUF3822: Protein of unknown function (DUF3822); InterPro: IPR024213 This is a family of uncharacterised bacterial proteins. However, structural-similarity searches indicate the family takes on an actin-like ATPase fold.; PDB: 3HRG_A.
Probab=23.16 E-value=44 Score=26.39 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCHHH
Q 043241 90 EELSDVLLYLIRLADICGIDLGD 112 (132)
Q Consensus 90 eELgDvL~yL~~lA~~lgIDLee 112 (132)
+--.|.+.|++-++..+|+|++.
T Consensus 204 ~~~eD~lYYlL~v~~Ql~ld~e~ 226 (253)
T PF12864_consen 204 QTAEDFLYYLLFVWEQLGLDPEK 226 (253)
T ss_dssp -SHHHHHHHHHHHHHHTT--TTT
T ss_pred CChHHHHHHHHHHHHHcCCCccc
Confidence 34789999999999999999864
No 48
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=22.93 E-value=1.3e+02 Score=20.03 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=19.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhh
Q 043241 100 IRLADICGIDLGDAATKKIVKNAI 123 (132)
Q Consensus 100 ~~lA~~lgIDLeea~~~k~~K~~~ 123 (132)
..++..+|+++.+|++.-+....+
T Consensus 18 ~~i~~~lGl~~s~ai~~fl~qvv~ 41 (83)
T TIGR02384 18 YAVFEELGLTPSTAIRMFLKQVIR 41 (83)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456788999999999888887664
No 49
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=22.87 E-value=1.1e+02 Score=18.21 Aligned_cols=20 Identities=20% Similarity=-0.039 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHhhcCCC
Q 043241 108 IDLGDAATKKIVKNAIKYPP 127 (132)
Q Consensus 108 IDLeea~~~k~~K~~~Ry~~ 127 (132)
-||+++++.-.+|+...|+.
T Consensus 21 PDLdel~r~l~~kl~~~fgg 40 (42)
T PF12221_consen 21 PDLDELFRKLQDKLGGLFGG 40 (42)
T ss_pred CCHHHHHHHHHHHHhcccCC
Confidence 58999999999998887764
No 50
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.54 E-value=1.6e+02 Score=21.06 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhcCCCCC
Q 043241 100 IRLADICGIDLGDAATKKIVKNAIKYPPNR 129 (132)
Q Consensus 100 ~~lA~~lgIDLeea~~~k~~K~~~Ry~~~~ 129 (132)
-++|..-|+.++++....=.|+-.|-+.|+
T Consensus 68 q~lA~~n~~s~~~vak~agqklv~Ra~~Gq 97 (109)
T COG3784 68 QQLAKKNGASTEEVAKLAGQKLVARAAPGQ 97 (109)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999988764
No 51
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=22.44 E-value=3.4e+02 Score=20.35 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=54.8
Q ss_pred hhhHHHHhhhhhccCCCchHHHHHhhhhccCCHH-HHH-----------------HHHHHh-hHHHHHHHHHHHHHhccc
Q 043241 12 VGHFRSIADSEEAKNMREGEEINADERVMDISLK-DLS-----------------KQLEEF-AMVGEVGELSEIFQWRGE 72 (132)
Q Consensus 12 ~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~-~l~-----------------~~l~~f-~L~~EvGELae~~k~~~~ 72 (132)
.|-+|.....+..-.+|+.|-.....-|.+..+= .+- ..+..+ ..+.|+|||+..+.....
T Consensus 34 ~~~LrNKLNP~q~H~Lt~~el~~i~~~Tgd~~il~~ll~~lg~v~v~lP~~~~~~~l~~~~l~~~a~~Gela~~a~ea~~ 113 (162)
T PF06892_consen 34 PQTLRNKLNPEQPHKLTVDELIAITDATGDYRILDALLAELGCVPVVLPKNEAAKSLPERVLKATAEVGELAREALEALS 113 (162)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHhCCcHHHHHHHHHCCCeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555544443457777777776666544311 100 111111 789999999988764321
Q ss_pred ccCCCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q 043241 73 VDKGLPNWEDADKEHLGEELSDVLLYLIRLAD 104 (132)
Q Consensus 73 ~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~ 104 (132)
.| .++...+..+.++.-+++-.|..+..
T Consensus 114 --dg--rit~~er~~i~~~a~~ai~~l~ll~~ 141 (162)
T PF06892_consen 114 --DG--RITRSERNRIIKEANAAIRSLALLIN 141 (162)
T ss_pred --CC--CcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 24567789999999999888877764
No 52
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=22.44 E-value=1.3e+02 Score=26.24 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=36.7
Q ss_pred ecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 7 ISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
+..-++.++|..|....+...++.+|....+..-..|+.-+.+.+..|
T Consensus 501 ~G~l~i~~LR~~a~~~lG~~F~lk~FHd~iL~~G~~Pl~~l~~~v~~~ 548 (549)
T PF05960_consen 501 VGYLEILELREEAEEELGDKFDLKEFHDAILSNGPLPLDVLEEEVDEW 548 (549)
T ss_dssp HHHHHHHHHHHHHHHHHGGG--HHHHHHHHHCT-S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 344577899999999999999999999999999999988888777654
No 53
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=22.29 E-value=2.5e+02 Score=20.85 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHhcccccCCCC-CCCcchhhhhhhhHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLP-NWEDADKEHLGEELSDV 95 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~-~~~~~~~e~l~eELgDv 95 (132)
.|..=+.+|+.++... |.. |+++.-++.|.+||.++
T Consensus 105 ~m~tAln~LaghY~s~-----g~raPlP~k~k~rll~el~~A 141 (145)
T PF13326_consen 105 TMYTALNALAGHYSSY-----GNRAPLPEKLKERLLKELDQA 141 (145)
T ss_dssp HHHHHHHHHHHHCHHH-----TTS-S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----CCCCCCCHHHHHHHHHHHHHH
Confidence 5666667777777643 333 45566688899998875
No 54
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=22.22 E-value=2.2e+02 Score=19.14 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhh--cCCCC
Q 043241 100 IRLADICGIDLGDAATKKIVKNAI--KYPPN 128 (132)
Q Consensus 100 ~~lA~~lgIDLeea~~~k~~K~~~--Ry~~~ 128 (132)
-.++..+|+++.+|+..-+..... +.|-+
T Consensus 17 ~~vl~~lGls~S~Ai~~fl~qi~~~~~iPF~ 47 (80)
T PRK11235 17 YAVLEKLGVTPSEALRLLLQYVAENGRLPFK 47 (80)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 356788999999999888877654 44443
No 55
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=21.32 E-value=87 Score=29.05 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=8.7
Q ss_pred hhhhhhhhHHHHHHHH
Q 043241 84 DKEHLGEELSDVLLYL 99 (132)
Q Consensus 84 ~~e~l~eELgDvL~yL 99 (132)
+.+.|.+||+|.=|.+
T Consensus 257 e~~~LK~ELiedRW~~ 272 (683)
T PF08580_consen 257 EAESLKKELIEDRWNI 272 (683)
T ss_pred HHHHHHHHhhhhhHHH
Confidence 3455566666655543
No 56
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.94 E-value=3.4e+02 Score=21.20 Aligned_cols=44 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRL 102 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~l 102 (132)
.+.+|+||..+-+..+-. -|.. .+++.+++++-|=.|+=|+=..
T Consensus 122 ~~~gE~~EaldDL~~iaQ--lg~D--eded~EE~~~~leEiiEyvRva 165 (186)
T COG3079 122 KLTGEAGEALDDLANIAQ--LGYD--EDEDQEELEESLEEIIEYVRVA 165 (186)
T ss_pred hhcccHHHHHHHHHHHHH--hcCC--ccccHHHHHHHHHHHHHHHHHH
Confidence 577888888776654321 1210 1245566665555555555333
No 57
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=20.91 E-value=1.6e+02 Score=20.45 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=19.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhCCCHHHH
Q 043241 85 KEHLGEELSDVLLYLIRLADICGIDLGDA 113 (132)
Q Consensus 85 ~e~l~eELgDvL~yL~~lA~~lgIDLeea 113 (132)
+.+|.+++.+++ +=.+|+.+|+|.+++
T Consensus 66 ~~eL~~~I~~tl--vhEiah~fG~~~e~l 92 (97)
T PF06262_consen 66 REELAELIRDTL--VHEIAHHFGISDEDL 92 (97)
T ss_dssp HHHHHHHHHHHH--HHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHcCCCHHHh
Confidence 445777777776 468999999999875
No 58
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=20.28 E-value=1.3e+02 Score=15.33 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.0
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q 043241 100 IRLADICGIDLGDAATKKI 118 (132)
Q Consensus 100 ~~lA~~lgIDLeea~~~k~ 118 (132)
..+|.++|+++.+....|-
T Consensus 12 ~~ia~~~~~~~~~~~~~N~ 30 (46)
T cd00118 12 SSIAQRYGISVEELLKLNG 30 (46)
T ss_pred HHHHHHHCcCHHHHHHHcC
Confidence 3577888999988765544
Done!