Query 043241
Match_columns 132
No_of_seqs 141 out of 1086
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3obc_A Pyrophosphatase; dimeri 99.9 2E-23 7E-28 150.2 5.9 74 55-130 41-115 (118)
2 2q73_A MAZG, hypothetical prot 99.9 2.8E-22 9.6E-27 139.4 10.2 96 27-129 1-96 (100)
3 2q5z_A MAZG, hypothetical prot 99.9 1.4E-21 4.6E-26 139.1 10.5 99 22-127 16-114 (114)
4 2a3q_A Hypothetical protein; M 99.8 1.8E-20 6.2E-25 141.9 11.2 102 26-129 28-133 (170)
5 2gta_A Hypothetical protein YP 99.8 1.2E-19 4E-24 129.8 9.1 99 26-129 3-104 (119)
6 2oie_A RS21-C6; helix, hydrola 99.8 5.7E-20 1.9E-24 129.3 7.1 96 25-122 12-111 (111)
7 1vmg_A Hypothetical protein SS 99.5 5.9E-14 2E-18 97.2 8.5 84 22-119 10-94 (95)
8 2yxh_A MAZG-related protein; T 99.5 5.3E-14 1.8E-18 100.3 7.7 61 55-128 30-94 (116)
9 3cra_A Protein MAZG; tandem-re 99.1 1.5E-10 5.3E-15 92.9 7.4 61 55-126 170-230 (265)
10 3cra_A Protein MAZG; tandem-re 98.9 3.6E-09 1.2E-13 84.9 7.4 61 55-128 37-101 (265)
11 2yay_A Dutpase; hydrolase, lei 98.0 4.8E-06 1.7E-10 66.9 4.7 53 55-111 47-99 (271)
12 2yf4_A MAZG-like nucleoside tr 97.9 0.00012 4.2E-09 54.4 9.6 68 55-123 49-121 (154)
13 2a7w_A PRA-PH, phosphoribosyl- 97.3 0.0013 4.6E-08 46.7 8.6 49 55-116 40-88 (116)
14 1yxb_A PRA-PH, phosphoribosyl- 97.3 0.00073 2.5E-08 46.7 6.8 49 55-116 41-89 (98)
15 1yvw_A PRA-PH, phosphoribosyl- 97.3 0.0015 5.1E-08 46.4 8.4 50 55-117 39-88 (115)
16 1y6x_A Phosphoribosyl-ATP pyro 97.2 0.0012 4.2E-08 45.2 7.0 48 55-115 44-91 (93)
17 2rfp_A Putative NTP pyrophosph 97.1 0.0025 8.7E-08 48.0 8.5 45 84-128 90-135 (171)
18 3nl9_A Putative NTP pyrophosph 96.3 0.036 1.2E-06 41.5 9.5 41 84-124 90-130 (171)
19 1w2y_A Deoxyuridine 5'-triphos 96.2 0.011 3.7E-07 45.9 6.4 49 55-107 42-90 (229)
20 1ogl_A Dutpase, deoxyuridine t 93.0 0.065 2.2E-06 43.2 3.3 53 55-111 45-97 (283)
21 2p06_A Hypothetical protein AF 77.0 5.6 0.00019 26.8 5.3 39 55-106 64-102 (114)
22 3fs7_A Parvalbumin, thymic; ca 73.3 4.1 0.00014 25.8 3.8 51 1-54 1-51 (109)
23 1bu3_A Calcium-binding protein 65.6 9.3 0.00032 24.0 4.3 51 1-54 1-51 (109)
24 2k9i_A Plasmid PRN1, complete 45.1 40 0.0014 18.9 4.8 32 96-127 21-52 (55)
25 3s8q_A R-M controller protein; 37.8 53 0.0018 19.5 4.3 25 97-121 54-78 (82)
26 2yay_A Dutpase; hydrolase, lei 35.7 38 0.0013 26.7 4.1 38 90-127 155-192 (271)
27 1rwy_A Parvalbumin alpha; EF-h 34.3 39 0.0013 20.9 3.3 46 6-54 5-50 (109)
28 3g5g_A Regulatory protein; tra 33.0 64 0.0022 20.6 4.3 26 97-122 71-96 (99)
29 3e11_A Predicted zincin-like m 32.7 50 0.0017 22.5 3.8 29 84-114 82-110 (114)
30 2adl_A CCDA; ribbon-helix-heli 32.0 42 0.0014 21.1 3.1 28 99-126 13-40 (72)
31 2wus_R RODZ, putative uncharac 29.7 81 0.0028 20.8 4.5 26 95-120 54-79 (112)
32 2pvb_A Protein (parvalbumin); 29.4 79 0.0027 19.3 4.2 45 7-54 6-50 (108)
33 1rro_A RAT oncomodulin; calciu 29.2 76 0.0026 19.4 4.1 46 6-54 5-50 (108)
34 5pal_A Parvalbumin; calcium-bi 28.9 67 0.0023 19.7 3.8 46 6-54 5-50 (109)
35 3ok8_A Brain-specific angiogen 27.3 96 0.0033 23.7 4.9 55 55-118 45-99 (222)
36 2keb_A DNA polymerase subunit 26.6 1.4E+02 0.0048 20.2 5.1 26 94-119 45-70 (101)
37 3f6w_A XRE-family like protein 26.6 69 0.0024 19.0 3.4 21 98-118 58-78 (83)
38 1pva_A Parvalbumin; calcium bi 25.5 67 0.0023 19.7 3.3 47 5-54 5-51 (110)
39 2ofy_A Putative XRE-family tra 25.5 63 0.0022 19.4 3.1 19 97-115 58-76 (86)
40 3qq6_A HTH-type transcriptiona 25.2 70 0.0024 19.2 3.2 18 98-115 55-72 (78)
41 1e0g_A Membrane-bound lytic mu 23.9 54 0.0018 17.6 2.3 23 93-118 10-32 (48)
42 2b5a_A C.BCLI; helix-turn-heli 23.7 96 0.0033 17.8 3.6 21 97-117 53-73 (77)
43 2djp_A Hypothetical protein SB 23.3 74 0.0025 19.2 3.0 22 93-117 23-44 (77)
44 2r1j_L Repressor protein C2; p 22.9 67 0.0023 17.9 2.7 18 98-115 49-66 (68)
45 2k9q_A Uncharacterized protein 22.0 1.1E+02 0.0036 17.9 3.6 19 98-116 46-64 (77)
46 3b7h_A Prophage LP1 protein 11 21.8 66 0.0022 18.7 2.5 19 97-115 51-69 (78)
47 1r69_A Repressor protein CI; g 21.8 68 0.0023 18.0 2.5 18 99-116 45-62 (69)
48 2ef8_A C.ECOT38IS, putative tr 21.6 1.3E+02 0.0045 17.5 4.3 27 94-120 54-80 (84)
49 3o0y_A Lipoprotein; structural 20.5 80 0.0027 27.5 3.7 48 7-54 558-605 (609)
50 2cwo_A P21, RNA silencing supp 20.4 64 0.0022 23.5 2.5 26 98-123 129-154 (197)
No 1
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus} SCOP: a.204.1.0
Probab=99.88 E-value=2e-23 Score=150.24 Aligned_cols=74 Identities=41% Similarity=0.607 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHh-cccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCCCC
Q 043241 55 AMVGEVGELSEIFQW-RGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYPPNRE 130 (132)
Q Consensus 55 ~L~~EvGELae~~k~-~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~~~~~ 130 (132)
+|++|+|||+++|+| ....... ...+.++++|.+|||||||||+++|+.+||||++|+.+||+||++|||.++.
T Consensus 41 ~L~~EaGELae~fqwg~~~~~~~--~~~~~~~~~l~eELADVL~Yl~~LA~~lgIDLeea~~~Km~Kn~~RYP~~~~ 115 (118)
T 3obc_A 41 SISIEVAELLEIFQWTRSSDEEF--EVLERRKGEVEEEIADVLIYLLFLCDVAEINPIEAVKRKMEKNERKYPKNRV 115 (118)
T ss_dssp HHHHHHHHHHHHTTTCCSHHHHH--HHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCchhc
Confidence 899999999999999 5332100 0123468899999999999999999999999999999999999999999864
No 2
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=99.88 E-value=2.8e-22 Score=139.44 Aligned_cols=96 Identities=29% Similarity=0.294 Sum_probs=71.9
Q ss_pred CCchHHHHHhhhhccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHh
Q 043241 27 MREGEEINADERVMDISLKDLSKQLEEFAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADIC 106 (132)
Q Consensus 27 m~~~eYq~~a~~t~~~~~~~l~~~l~~f~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~l 106 (132)
|++++||+.+.++.-... .-...+. +|.+|+|||+++++|..... +..+..++++.+||||||||++++|+.+
T Consensus 1 M~l~elQ~~v~~~~~~~~-~~~~~~~--kL~eE~gEl~e~~~~~~~~~----~~~~~~~~~i~eELgDvL~~l~~lA~~l 73 (100)
T 2q73_A 1 MKLSELQSHIKEFDYAPE-QSEHYFF--KLIEEVGELSESIRKGKSGQ----PTLDELKGSVAEELYDVLYYVCALANIH 73 (100)
T ss_dssp CCHHHHHHHHHHHCCCGG-GHHHHHH--HHHHHHHHHHHHHHTTCCSC----CCGGGCTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhccC-ChHHHHH--HHHHHHHHHHHHHHhhcccc----cccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998752221 1112222 99999999999999853221 1134567899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCC
Q 043241 107 GIDLGDAATKKIVKNAIKYPPNR 129 (132)
Q Consensus 107 gIDLeea~~~k~~K~~~Ry~~~~ 129 (132)
||||++|+.+||+||.+|||+..
T Consensus 74 giDle~al~~k~~~n~~kyp~~~ 96 (100)
T 2q73_A 74 GVNLEKTHELKEVLNKVKYNRHH 96 (100)
T ss_dssp TCCHHHHHHHHHHHHTC------
T ss_pred CcCHHHHHHHHHHHhcccCCCcc
Confidence 99999999999999999999753
No 3
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=99.86 E-value=1.4e-21 Score=139.05 Aligned_cols=99 Identities=28% Similarity=0.286 Sum_probs=75.4
Q ss_pred hhccCCCchHHHHHhhhhccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHH
Q 043241 22 EEAKNMREGEEINADERVMDISLKDLSKQLEEFAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIR 101 (132)
Q Consensus 22 ~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~ 101 (132)
+....|++++||+.+.++...+- .....+. +|.+|+|||+++++|...... ..+.+++++.+||||||||+++
T Consensus 16 ~~~~~m~l~elq~~i~~~~~~~~-~~~~~~~--kL~eE~gEl~e~i~~~~~~~~----~~~~~~~~l~eELgDvL~~l~~ 88 (114)
T 2q5z_A 16 PRGSHMKLSELQSHIKEFDYAPE-QSEHYFF--KLIEEVGELSESIRKGKSGQP----TLDELKGSVAEELYDVLYYVCA 88 (114)
T ss_dssp ----CCBHHHHHHHHHHHSCCGG-GHHHHHH--HHHHHHHHHHHHHHTTCCSCC----CGGGCTTCHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhcCCC-chHHHHH--HHHHHHHHHHHHHHhhccccc----cccchHHHHHHHHHHHHHHHHH
Confidence 44556999999999998854331 1112222 999999999999998643211 1245678999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhcCCC
Q 043241 102 LADICGIDLGDAATKKIVKNAIKYPP 127 (132)
Q Consensus 102 lA~~lgIDLeea~~~k~~K~~~Ry~~ 127 (132)
+|+.+||||++|+..+++||.+|||+
T Consensus 89 LA~~lgiDle~al~~k~~K~~~RyP~ 114 (114)
T 2q5z_A 89 LANIHGVNLEKTRELKEVLNKVKYNR 114 (114)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCC--
T ss_pred HHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999995
No 4
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=99.84 E-value=1.8e-20 Score=141.91 Aligned_cols=102 Identities=34% Similarity=0.590 Sum_probs=81.2
Q ss_pred CCCchHHHHHhhhhc-cCCHHH---HHHHHHHhhHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHH
Q 043241 26 NMREGEEINADERVM-DISLKD---LSKQLEEFAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIR 101 (132)
Q Consensus 26 ~m~~~eYq~~a~~t~-~~~~~~---l~~~l~~f~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~ 101 (132)
.|++.++|+.+.+.. ..+-.. ....+. +|.+|+|||+++|+|......|....++.++++|.+|||||||||++
T Consensus 28 lm~~~eLqk~~~~~~~~~dW~~~~~p~~l~~--~L~EEvgEL~eai~~~~~~~~g~~~~~~~~~e~l~eELGDVL~~lv~ 105 (170)
T 2a3q_A 28 EPTLEDIRRLHAEFAAERDWEQFHQPRNLLL--ALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVA 105 (170)
T ss_dssp CSCHHHHHHHHHHHHHTSCHHHHHCHHHHHH--HHHHHHHHHHHHHTTCCSSSCCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCcccCCHHHHHH--HHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 499999999998864 333221 222222 89999999999999865433343333456789999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhcCCCCC
Q 043241 102 LADICGIDLGDAATKKIVKNAIKYPPNR 129 (132)
Q Consensus 102 lA~~lgIDLeea~~~k~~K~~~Ry~~~~ 129 (132)
||+.+||||++|+..+++||.+|||+++
T Consensus 106 LA~~lgIDleeAl~~k~~K~~~Ryp~~~ 133 (170)
T 2a3q_A 106 LAARCHVDLPQAVISKMDTNRQRYPVHL 133 (170)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccHh
Confidence 9999999999999999999999999864
No 5
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} SCOP: a.204.1.2
Probab=99.80 E-value=1.2e-19 Score=129.81 Aligned_cols=99 Identities=19% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCCchHHHHHhhhhccCC---HHHHHHHHHHhhHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHH
Q 043241 26 NMREGEEINADERVMDIS---LKDLSKQLEEFAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRL 102 (132)
Q Consensus 26 ~m~~~eYq~~a~~t~~~~---~~~l~~~l~~f~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~l 102 (132)
.|++++||+.+.+...-. .-.....+. +|.+|+|||+++++|........ ....++++.+||||||||++++
T Consensus 3 ~m~l~elq~~v~~~~~~r~w~~~~~~~~~~--kL~EE~gEl~eai~~~~~~~~~~---~~~~~~~l~eELGDvLf~lv~l 77 (119)
T 2gta_A 3 DKTMKDIQAEVDRYIGQFKEGYFSPLAMMA--RLTEELGELAREVNHRYGEKPKK---ATEDDKSMEEEIGDVLFVLVCL 77 (119)
T ss_dssp CCBHHHHHHHHHHHHTTSSSCSCCHHHHHH--HHHHHHHHHHHHHHHHTSSSCCC---SSCSCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCccCCHHHHHH--HHHHHHHHHHHHHHHhccccccc---ccchHHHHHHHHHHHHHHHHHH
Confidence 699999999987643211 001111222 89999999999999853221110 1223579999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhcCCCCC
Q 043241 103 ADICGIDLGDAATKKIVKNAIKYPPNR 129 (132)
Q Consensus 103 A~~lgIDLeea~~~k~~K~~~Ry~~~~ 129 (132)
|+.+||||++|+..+++||.+|||.+.
T Consensus 78 A~~l~idle~al~~~~~K~~~R~p~~~ 104 (119)
T 2gta_A 78 ANSLDISLEEAHDRVMHKFNTRDKDRW 104 (119)
T ss_dssp HHTTTCCHHHHHHHHHHHSCC------
T ss_pred HHHHCcCHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999864
No 6
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=99.80 E-value=5.7e-20 Score=129.28 Aligned_cols=96 Identities=34% Similarity=0.578 Sum_probs=70.8
Q ss_pred cCCCchHHHHHhhhhc-cCCHH---HHHHHHHHhhHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHH
Q 043241 25 KNMREGEEINADERVM-DISLK---DLSKQLEEFAMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLI 100 (132)
Q Consensus 25 ~~m~~~eYq~~a~~t~-~~~~~---~l~~~l~~f~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~ 100 (132)
..|++.++|+.+.++. ..+.. .....+. +|++|+|||+++|+|......|....++.++++|.+|||||||||+
T Consensus 12 ~~m~~~~lq~~~~~~~~~~dw~~~~~~~~~~~--~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDvL~~l~ 89 (111)
T 2oie_A 12 PEPTLEDIRRLHAEFAAERDWEQFHQPRNLLL--ALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLV 89 (111)
T ss_dssp SCSCHHHHHHHHHHHHHTTTCGGGCCHHHHHH--HHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHCCCcccCCHHHHHH--HHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 3599999999999873 22211 2222222 8999999999999987543333222235678899999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 043241 101 RLADICGIDLGDAATKKIVKNA 122 (132)
Q Consensus 101 ~lA~~lgIDLeea~~~k~~K~~ 122 (132)
++|+.+||||++|+.+||+||+
T Consensus 90 ~lA~~lgiDle~al~~k~~Kn~ 111 (111)
T 2oie_A 90 ALAARCHVDLPQAVISKMDTNR 111 (111)
T ss_dssp HHHHHTTCCHHHHHHTTC----
T ss_pred HHHHHHCcCHHHHHHHHHHhhC
Confidence 9999999999999999999984
No 7
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=99.51 E-value=5.9e-14 Score=97.18 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=61.6
Q ss_pred hhccCCCchHHHHHhhhhccCCHHHHHHHHHHh-hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHH
Q 043241 22 EEAKNMREGEEINADERVMDISLKDLSKQLEEF-AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLI 100 (132)
Q Consensus 22 ~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f-~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~ 100 (132)
+---++++.+.|+.+.+.-- +-..-+.....| +|.+|+|||++++++ .+++++.+||||||||++
T Consensus 10 ~~~~~~~l~~lq~~a~~~gf-dw~~~~~~~~~~~kl~EE~gEl~eai~~-------------~~~~~i~eELgDvLf~lv 75 (95)
T 1vmg_A 10 HHHMDLELKELQSKMKEMYF-EKDSQRGIYATFTWLVEEVGELAEALLS-------------NNLDSIQEELADVIAWTV 75 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHH-------------TCHHHHHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHhCC-CCCcccCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHH
Confidence 33445778999999875531 111100012222 899999999999873 247889999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHH
Q 043241 101 RLADICGIDLGDAATKKIV 119 (132)
Q Consensus 101 ~lA~~lgIDLeea~~~k~~ 119 (132)
++|+.+||||++|+.+|+.
T Consensus 76 ~lA~~lgiD~e~al~~k~~ 94 (95)
T 1vmg_A 76 SIANLEGIDIEEALKKKYK 94 (95)
T ss_dssp HHHHHHTCCHHHHHHHHSC
T ss_pred HHHHHHCcCHHHHHHHHhc
Confidence 9999999999999999864
No 8
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=99.50 E-value=5.3e-14 Score=100.26 Aligned_cols=61 Identities=30% Similarity=0.395 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADIC----GIDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~l----gIDLeea~~~k~~K~~~Ry~~~ 128 (132)
.|.+|++||.++++. .+++++.+|||||||+++.+|+.+ |||+++|+..+++||.+|||.-
T Consensus 30 ~l~EE~~El~eai~~-------------~d~~~l~eElGDlLf~vv~la~~~~~~~~~d~e~al~~~~~K~~rR~~~v 94 (116)
T 2yxh_A 30 ALASEIEEVAEAVKK-------------NDLANLEEEIGDMIYDALLVAAVAQRDYGIDLESAIQKVVEKISHRKPWL 94 (116)
T ss_dssp HHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 899999999999982 257899999999999999999998 9999999999999999999954
No 9
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=99.10 E-value=1.5e-10 Score=92.88 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYP 126 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~ 126 (132)
.+.+|+|||.+++... ..+++++++||||+||.++++|+.+|||++.|+++.+.||.+||.
T Consensus 170 Kl~EEl~El~eal~~~-----------~~~~~~ieeElGDlLFalVnlAR~~gIDpE~ALr~an~KF~~Rf~ 230 (265)
T 3cra_A 170 KVYEEIDEVMYEARQA-----------VVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFR 230 (265)
T ss_dssp HHHHHHHHHHHHHHSS-----------SCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-----------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999998621 235688999999999999999999999999999999999999985
No 10
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=98.88 E-value=3.6e-09 Score=84.94 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHH---HHHHHHHHhC-CCHHHHHHHHHHHHhhcCCCC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLL---YLIRLADICG-IDLGDAATKKIVKNAIKYPPN 128 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~---yL~~lA~~lg-IDLeea~~~k~~K~~~Ry~~~ 128 (132)
-|.+|++||+++|.. .+.++|.+||||||| |..++|..-| +|+++++....+|+.+|+|+-
T Consensus 37 yl~eE~~Ev~daI~~-------------~d~~~l~eELGDvLlqVvf~a~ia~e~g~F~~~dV~~~~~~KlirRhPhv 101 (265)
T 3cra_A 37 YTLEETYEVLDAIAR-------------EDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHV 101 (265)
T ss_dssp HHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCC
Confidence 688999999999983 257999999999999 6667777777 999999999999999999964
No 11
>2yay_A Dutpase; hydrolase, leishmaniasis; HET: DUP; 1.86A {Leishmania major} PDB: 2yaz_A* 2yb0_A* 2cje_A*
Probab=98.00 E-value=4.8e-06 Score=66.95 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLG 111 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLe 111 (132)
+|..|+|||++.+.|+...... .+.+++++.+|++||+.|++.+|..+|+|+.
T Consensus 47 AL~vElaELaE~~~WK~Wk~~~----~~~d~e~IleElVDvLHFlLSla~~lg~d~~ 99 (271)
T 2yay_A 47 AITMESTELLDSYPWKWWKNLN----ATPDLANVRIELVDIFHFSLSGAMQMRSTPD 99 (271)
T ss_dssp HHHHHHHHHHTTSCCCSSSSTT----CCCCHHHHHHHHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHhhCcCchhccC----CcccHHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 8999999999999987654311 2567899999999999999999999999974
No 12
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=97.85 E-value=0.00012 Score=54.37 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHhccc-ccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHH----HHHHHhh
Q 043241 55 AMVGEVGELSEIFQWRGE-VDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATK----KIVKNAI 123 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~-~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~----k~~K~~~ 123 (132)
-+.+|+.|+.+++..... -..+ ......+.-++.++|+|++.++...+..+|||++.++.. ||.|+-+
T Consensus 49 li~EEl~E~~e~~~~~~~~~~~~-~A~~~~dlve~aDAL~DllYv~~G~~~~~Gid~~~vf~eVh~SNMsKl~~ 121 (154)
T 2yf4_A 49 LLDEESAEVRAEIDHLLARQAAG-EALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRANLSKASG 121 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCCCGGGGHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh-hccccccHHHHHHHHhChhhHHHHHHHHcCCCHHHHHHHHHHHHHHhhCC
Confidence 578888888875443210 0001 011345678999999999999999999999999988766 7777743
No 13
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=97.34 E-value=0.0013 Score=46.66 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATK 116 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~ 116 (132)
++.+|+.|+.-+.+ .++++++..|.||+++-++.+....||+|++++..
T Consensus 40 KvgEEA~E~iiAak-------------~~d~~el~~E~ADLlYHllVlL~~~gv~l~dV~~e 88 (116)
T 2a7w_A 40 KVAEEAAETLMASK-------------DKDKLHLVREVADLWFHTMVLLTYHGLRPEDVVME 88 (116)
T ss_dssp HHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999988776 23689999999999999999999999999999754
No 14
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=97.31 E-value=0.00073 Score=46.70 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATK 116 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~ 116 (132)
++.+|++|+.-+.+ .++++++..|.||+++-++.+....||+|+++++.
T Consensus 41 KvgEEA~E~iiAak-------------~~d~~~l~~E~ADLlYHllVlL~~~gv~l~dV~~e 89 (98)
T 1yxb_A 41 KVVEEAAEVWMAAE-------------YEGKDAAAEEISQLLYHVQVMMVARGISLDDVYAH 89 (98)
T ss_dssp HHHHHHHHHHHHHH-------------HSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999988776 23689999999999999999999999999999764
No 15
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=97.30 E-value=0.0015 Score=46.35 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKK 117 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k 117 (132)
++.+|++|+.-+.+ .++++++..|.||+++-++.+....||+|++++..=
T Consensus 39 KvgEEA~E~iiAak-------------~~d~~~l~~E~ADLlYHllVlL~~~gv~l~dV~~eL 88 (115)
T 1yvw_A 39 KIGEECAEVIIACK-------------NNDKEEVVKEMVDVFYHCFVLLAEKNIALEDVMREV 88 (115)
T ss_dssp HHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999988776 236899999999999999999999999999997643
No 16
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=97.22 E-value=0.0012 Score=45.15 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAAT 115 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~ 115 (132)
++.+|++|+.-+.+ .++++++..|.||+++-++.+....||+|+++.+
T Consensus 44 KvgEEA~E~iiAak-------------~~~~~~l~~E~ADLlYHllVlL~~~gv~l~dV~~ 91 (93)
T 1y6x_A 44 KLLEEAGEVWLAAE-------------HESNDALAEEISQLLYWTQVLMISRGLSLDDVYR 91 (93)
T ss_dssp HHHHHHHHHHHHHH-------------HSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 89999999988776 2368999999999999999999999999999874
No 17
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=97.11 E-value=0.0025 Score=48.00 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=39.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC-CCC
Q 043241 84 DKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKY-PPN 128 (132)
Q Consensus 84 ~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry-~~~ 128 (132)
+.-.+.++|+|++.++...+-.+|||++.++..-..-|.++. +.|
T Consensus 90 dlve~aDaL~Dl~Yv~~G~~~~~Gid~~~~~~eVh~SNmsKl~~dG 135 (171)
T 2rfp_A 90 RLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQANMAKLGPDG 135 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCTTS
T ss_pred cHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcCCCC
Confidence 567899999999999999999999999999988888888876 444
No 18
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=96.27 E-value=0.036 Score=41.47 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=34.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Q 043241 84 DKEHLGEELSDVLLYLIRLADICGIDLGDAATKKIVKNAIK 124 (132)
Q Consensus 84 ~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~R 124 (132)
+.-++.+.|+|+++.+...+..+|+|++.++..-..-|.++
T Consensus 90 d~ve~~DaL~D~~yv~~g~~~~~g~~~~~~~~eV~~sNmsK 130 (171)
T 3nl9_A 90 RLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQANMAK 130 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccc
Confidence 45678899999999999999999999999988666666655
No 19
>1w2y_A Deoxyuridine 5'-triphosphate nucleotide hydrolase; DUTP pyrophosphatase, dimeric, ligand complex, magnesium IONS, pathogen, drug target; HET: DUN; 1.65A {Campylobacter jejuni} SCOP: a.204.1.1 PDB: 2cic_A*
Probab=96.17 E-value=0.011 Score=45.92 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhC
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICG 107 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lg 107 (132)
+|..|.||+++...|+-..... .+.+++.+.+|+.|++..++.++...+
T Consensus 42 Al~vElaElae~~~wK~WK~~~----~~~d~e~ileEyVDilHFiLSi~l~~~ 90 (229)
T 1w2y_A 42 CIYMECAELIDSFTWKHWKNIS----SLTNWENVRIEIVDIWHFILSLLLEEY 90 (229)
T ss_dssp HHHHHHHHHHTTSCCCSSSSTT----CCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCcccccCC----CCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999987776443200 245689999999999999999987743
No 20
>1ogl_A Dutpase, deoxyuridine triphosphatase; hydrolase, native, X-RAY, dimer; 2.4A {Trypanosoma cruzi} SCOP: a.204.1.1 PDB: 1ogk_A
Probab=92.99 E-value=0.065 Score=43.17 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLG 111 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLe 111 (132)
+|..|+||+++.+.|+-..... .+.+++.+.+|+.|++..++.++...+.+.+
T Consensus 45 AL~VElaELane~~wK~Wk~~~----~~~D~e~ileEyVDilHFiLSi~le~~~~~~ 97 (283)
T 1ogl_A 45 AITMESAELIDSYPWKWWKNVK----AQTDMHNVRIEIADILHFSLSGEIQKRTQDE 97 (283)
T ss_dssp HHHHHHHHHHHTSCCCTTSCCC----SCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhCCccccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 8999999999999885442210 1457899999999999999999999988755
No 21
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=77.02 E-value=5.6 Score=26.83 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHh
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADIC 106 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~l 106 (132)
.|.+|..||.+++.+ ++-+++.+||-||.-+|+.+--++
T Consensus 64 rlfeemdelreavek-------------edwenlrdelldvanfcmylwgkl 102 (114)
T 2p06_A 64 RLFEEMDELREAVEK-------------EDWENLRDELLDVANFCMYLWGKL 102 (114)
T ss_dssp HHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999874 356889999999988777765544
No 22
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=73.30 E-value=4.1 Score=25.76 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=37.8
Q ss_pred CcceeeecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 1 MAYSLVISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
|+.+..++-.+++.+.+.++ ..+.+++.||......+ ..+.+.+...+..|
T Consensus 1 mal~~~~~~~ei~~~~~~~D--~~g~i~~~eF~~~~~~~-~~~~~~l~~~F~~~ 51 (109)
T 3fs7_A 1 MAITDILSAKDIESALSSCQ--AADSFNYKSFFSTVGLS-SKTPDQIKKVFGIL 51 (109)
T ss_dssp -CGGGTSCHHHHHHHHHHTC--STTCCCHHHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred CCccCcCCHHHHHHHHHhcC--CCCcCcHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 67788889999999999998 67889999999887543 23455555555544
No 23
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=65.56 E-value=9.3 Score=24.00 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=36.1
Q ss_pred CcceeeecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 1 MAYSLVISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
|+..+..+-.+++.+.+.++ ..+.+++.||......+ ..+...+...+..|
T Consensus 1 ~slg~~~~~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~-~~~~~~l~~~F~~~ 51 (109)
T 1bu3_A 1 XAFSGILADADVAAALKACE--AADSFNYKAFFAKVGLT-AKSADDIKKAFFVI 51 (109)
T ss_dssp -CCSCSSCHHHHHHHHHHTC--STTCCCHHHHHHHHTGG-GSCHHHHHHHHHHH
T ss_pred CcccccCCHHHHHHHHHHhC--CCCcCcHHHHHHHHHcC-hhhHHHHHHHHHHH
Confidence 56667788899999999998 66789999999876543 23445555555544
No 24
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=45.14 E-value=40 Score=18.92 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Q 043241 96 LLYLIRLADICGIDLGDAATKKIVKNAIKYPP 127 (132)
Q Consensus 96 L~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~~ 127 (132)
+--|-.+|...|++..+++...+.....++..
T Consensus 21 ~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~~ 52 (55)
T 2k9i_A 21 HDRLMEIAKEKNLTLSDVCRLAIKEYLDNHDK 52 (55)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHh
Confidence 34567789999999999999999988776543
No 25
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=37.78 E-value=53 Score=19.54 Aligned_cols=25 Identities=8% Similarity=-0.306 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 043241 97 LYLIRLADICGIDLGDAATKKIVKN 121 (132)
Q Consensus 97 ~yL~~lA~~lgIDLeea~~~k~~K~ 121 (132)
-.+..+|..+|+++++.+.......
T Consensus 54 ~~l~~ia~~l~v~~~~l~~~~~~~~ 78 (82)
T 3s8q_A 54 KSLELIMKGLEVSDVVFFEMLIKEI 78 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhcCChHhh
Confidence 4678899999999999988766544
No 26
>2yay_A Dutpase; hydrolase, leishmaniasis; HET: DUP; 1.86A {Leishmania major} PDB: 2yaz_A* 2yb0_A* 2cje_A*
Probab=35.74 E-value=38 Score=26.73 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Q 043241 90 EELSDVLLYLIRLADICGIDLGDAATKKIVKNAIKYPP 127 (132)
Q Consensus 90 eELgDvL~yL~~lA~~lgIDLeea~~~k~~K~~~Ry~~ 127 (132)
+.+..++-.++.++..+|+++..+...|...|..|...
T Consensus 155 ~~~~~l~~~Fl~Lg~~lGfsI~~aY~~KN~lN~~RQ~~ 192 (271)
T 2yay_A 155 YRFDVIIECIIYAAEDLGFNLVAYYIAKHTLNCIRQLS 192 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHc
Confidence 44566677889999999999999999999999988433
No 27
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=34.26 E-value=39 Score=20.86 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=32.5
Q ss_pred eecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 6 VISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
.++-.+++.+.+.++ ..+.+++.||......+ ..+...+...+..|
T Consensus 5 ~~t~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~-~~~~~~l~~~F~~~ 50 (109)
T 1rwy_A 5 LLSAEDIKKAIGAFT--AADSFDHKKFFQMVGLK-KKSADDVKKVFHIL 50 (109)
T ss_dssp HSCHHHHHHHHHTTC--STTCCCHHHHHHHHTGG-GSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcC--CCCcEeHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 457788999999988 66789999999876433 33455555555544
No 28
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=33.02 E-value=64 Score=20.58 Aligned_cols=26 Identities=8% Similarity=-0.309 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043241 97 LYLIRLADICGIDLGDAATKKIVKNA 122 (132)
Q Consensus 97 ~yL~~lA~~lgIDLeea~~~k~~K~~ 122 (132)
-.+..||..||+++++.+........
T Consensus 71 ~~l~~ia~~l~v~~~~l~~~~~~e~~ 96 (99)
T 3g5g_A 71 KSLELIMKGLEVSDVVFFEMLIKEIL 96 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhccCHHHHh
Confidence 35788999999999999987766543
No 29
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=32.67 E-value=50 Score=22.49 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=21.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhCCCHHHHH
Q 043241 84 DKEHLGEELSDVLLYLIRLADICGIDLGDAA 114 (132)
Q Consensus 84 ~~e~l~eELgDvL~yL~~lA~~lgIDLeea~ 114 (132)
.++.+.+++.+|+ +=.+|+.+|+|.++.-
T Consensus 82 ~~~el~~~V~~vv--vhEiahh~G~~~e~l~ 110 (114)
T 3e11_A 82 TESEVIDEVRKTV--VHEIAHHFGIDDERLH 110 (114)
T ss_dssp SHHHHHHHHHHHH--HHHHHHHTTCCHHHHH
T ss_pred ChhHHHHHHHHHH--HHHHHHHcCCCHHHHH
Confidence 3556677777765 4579999999998863
No 30
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=32.02 E-value=42 Score=21.07 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhcCC
Q 043241 99 LIRLADICGIDLGDAATKKIVKNAIKYP 126 (132)
Q Consensus 99 L~~lA~~lgIDLeea~~~k~~K~~~Ry~ 126 (132)
|...|..+||++..++...+.+--+|-.
T Consensus 13 L~~~a~~~~iN~S~~l~~aL~~~ir~~~ 40 (72)
T 2adl_A 13 SYQLLKAYDVNISGLVSTTMQNEARRLR 40 (72)
T ss_dssp THHHHHHTTCCCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456999999999999998887666544
No 31
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=29.74 E-value=81 Score=20.84 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043241 95 VLLYLIRLADICGIDLGDAATKKIVK 120 (132)
Q Consensus 95 vL~yL~~lA~~lgIDLeea~~~k~~K 120 (132)
+.-++..+|+.||+|+++.+...-..
T Consensus 54 ~~~~l~~iA~~Lgv~~~~L~~~~~~~ 79 (112)
T 2wus_R 54 IKSYIKRYSEFLELSPDEMLKLYEEG 79 (112)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHhh
Confidence 56678899999999999988765443
No 32
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=29.38 E-value=79 Score=19.33 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=32.2
Q ss_pred ecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 7 ISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
.+-.+++.+.+.++ ..+.+++.||......+ ..+...+...+..|
T Consensus 6 ~~~~e~~~l~~~~d--~~g~i~~~eF~~~~~~~-~~~~~~l~~~F~~~ 50 (108)
T 2pvb_A 6 LKDADVAAALAACS--AADSFKHKEFFAKVGLA-SKSLDDVKKAFYVI 50 (108)
T ss_dssp SCHHHHHHHHHHTC--STTCCCHHHHHHHHTGG-GSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC--CCCcCcHHHHHHHHhCC-hhHHHHHHHHHHHH
Confidence 56788999999988 56789999999886543 33455555555555
No 33
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=29.22 E-value=76 Score=19.43 Aligned_cols=46 Identities=4% Similarity=0.106 Sum_probs=31.3
Q ss_pred eecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 6 VISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
.++-.+++.+++.++ ..+.+++.||......+ ..+...+...+..|
T Consensus 5 ~~t~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~-~~~~~~l~~~F~~~ 50 (108)
T 1rro_A 5 ILSAEDIAAALQECQ--DPDTFEPQKFFQTSGLS-KMSASQVKDIFRFI 50 (108)
T ss_dssp TSCHHHHHHHHHHTC--STTCCCHHHHHHHHSGG-GSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcc--CCCCcCHHHHHHHHhcC-cccHHHHHHHHHHh
Confidence 356688999999998 66789999999876432 23444454444444
No 34
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=28.94 E-value=67 Score=19.72 Aligned_cols=46 Identities=7% Similarity=-0.004 Sum_probs=32.6
Q ss_pred eecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 6 VISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
+++-.+++.+.+.++. .+.+++.||......+ ..+.+.+...+..|
T Consensus 5 ~~s~~ei~~~~~~~d~--~g~i~~~eF~~~~~~~-~~~~~~l~~~F~~~ 50 (109)
T 5pal_A 5 VLKADDINKAISAFKD--PGTFDYKRFFHLVGLK-GKTDAQVKEVFEIL 50 (109)
T ss_dssp TSCHHHHHHHHHHTCS--TTCCCHHHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCC--CCcCcHHHHHHHHhhc-cCcHHHHHHHHHHH
Confidence 4677899999999986 7889999999876543 23445555544444
No 35
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=27.31 E-value=96 Score=23.75 Aligned_cols=55 Identities=15% Similarity=0.046 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043241 55 AMVGEVGELSEIFQWRGEVDKGLPNWEDADKEHLGEELSDVLLYLIRLADICGIDLGDAATKKI 118 (132)
Q Consensus 55 ~L~~EvGELae~~k~~~~~~~g~~~~~~~~~e~l~eELgDvL~yL~~lA~~lgIDLeea~~~k~ 118 (132)
+++.=+....+++.+.+... ....-..||||+|.-+...-+.+.-+++..+..-.
T Consensus 45 a~~~A~~~y~dA~~Kige~A---------~~S~~skeLG~vL~qis~~hR~i~~~le~~~k~f~ 99 (222)
T 3ok8_A 45 ALSEAAEVYFSAIQKIGEQA---------LQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFH 99 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455577777764311 11112479999999999999999999888765543
No 36
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.59 E-value=1.4e+02 Score=20.22 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043241 94 DVLLYLIRLADICGIDLGDAATKKIV 119 (132)
Q Consensus 94 DvL~yL~~lA~~lgIDLeea~~~k~~ 119 (132)
+|+-=++.+|..+++|.++.+..=|+
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmA 70 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIA 70 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57888889999999998876655443
No 37
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=26.59 E-value=69 Score=18.97 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHH
Q 043241 98 YLIRLADICGIDLGDAATKKI 118 (132)
Q Consensus 98 yL~~lA~~lgIDLeea~~~k~ 118 (132)
.+..+|..+|+++++.+....
T Consensus 58 ~l~~l~~~l~~~~~~l~~~~~ 78 (83)
T 3f6w_A 58 EFMDFCRGIGTDPYALLSKLE 78 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 788899999999999876543
No 38
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=25.54 E-value=67 Score=19.72 Aligned_cols=47 Identities=6% Similarity=0.070 Sum_probs=32.5
Q ss_pred eeecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 5 LVISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
..++-.+++.+.+.++ ..+.+++.||......+ ..+...+...+..|
T Consensus 5 ~~~t~~e~~~~~~~~d--~~g~i~~~ef~~~~~~~-~~~~~~l~~~F~~~ 51 (110)
T 1pva_A 5 DLLKADDIKKALDAVK--AEGSFNHKKFFALVGLK-AMSANDVKKVFKAI 51 (110)
T ss_dssp HHSCHHHHHHHHHHTC--STTCCCHHHHHHHHTCT-TSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcC--CCCcCcHHHHHHHHccC-cchHHHHHHHHHHh
Confidence 3467788999999888 56789999999886432 23455555555544
No 39
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=25.53 E-value=63 Score=19.37 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q 043241 97 LYLIRLADICGIDLGDAAT 115 (132)
Q Consensus 97 ~yL~~lA~~lgIDLeea~~ 115 (132)
-.+..+|..||+++++.+.
T Consensus 58 ~~l~~ia~~l~v~~~~l~~ 76 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVAA 76 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHhc
Confidence 4578899999999998764
No 40
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=25.20 E-value=70 Score=19.18 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCHHHHHH
Q 043241 98 YLIRLADICGIDLGDAAT 115 (132)
Q Consensus 98 yL~~lA~~lgIDLeea~~ 115 (132)
.+..||..||++++..+.
T Consensus 55 ~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 55 FLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHhC
Confidence 678889999999988765
No 41
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=23.86 E-value=54 Score=17.59 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043241 93 SDVLLYLIRLADICGIDLGDAATKKI 118 (132)
Q Consensus 93 gDvL~yL~~lA~~lgIDLeea~~~k~ 118 (132)
||.||- +|.++|++..+....|-
T Consensus 10 GDtl~~---Ia~~~~~~~~~l~~~N~ 32 (48)
T 1e0g_A 10 GDSLSS---IAKRHGVNIKDVMRWNS 32 (48)
T ss_dssp TCCHHH---HHHHHTCCHHHHHHHCS
T ss_pred CCcHHH---HHHHHCcCHHHHHHhCC
Confidence 566655 67899999988877654
No 42
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.66 E-value=96 Score=17.83 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHH
Q 043241 97 LYLIRLADICGIDLGDAATKK 117 (132)
Q Consensus 97 ~yL~~lA~~lgIDLeea~~~k 117 (132)
-.+..+|..+|++++..+...
T Consensus 53 ~~l~~la~~l~~~~~~l~~~~ 73 (77)
T 2b5a_A 53 INIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHhccc
Confidence 347889999999999987654
No 43
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.27 E-value=74 Score=19.22 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH
Q 043241 93 SDVLLYLIRLADICGIDLGDAATKK 117 (132)
Q Consensus 93 gDvL~yL~~lA~~lgIDLeea~~~k 117 (132)
||.||- ||.++|++++++.+.|
T Consensus 23 GDTL~~---IA~~~~~~~~~l~~~N 44 (77)
T 2djp_A 23 GDTLAG---LALKYGVTMEQIKRAN 44 (77)
T ss_dssp TCCHHH---HHHHHTCCHHHHHHHH
T ss_pred CCcHHH---HHHHHCcCHHHHHHHc
Confidence 677765 6889999999987766
No 44
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.90 E-value=67 Score=17.94 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCHHHHHH
Q 043241 98 YLIRLADICGIDLGDAAT 115 (132)
Q Consensus 98 yL~~lA~~lgIDLeea~~ 115 (132)
.+..+|..+|++++..+.
T Consensus 49 ~l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 49 NLLALSKALQCSPDYLLK 66 (68)
T ss_dssp HHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHhc
Confidence 377889999999988763
No 45
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.97 E-value=1.1e+02 Score=17.94 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCHHHHHHH
Q 043241 98 YLIRLADICGIDLGDAATK 116 (132)
Q Consensus 98 yL~~lA~~lgIDLeea~~~ 116 (132)
.+..+|..+|+++++.+..
T Consensus 46 ~l~~ia~~l~v~~~~l~~~ 64 (77)
T 2k9q_A 46 KYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHhCc
Confidence 5678999999999988754
No 46
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.79 E-value=66 Score=18.65 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q 043241 97 LYLIRLADICGIDLGDAAT 115 (132)
Q Consensus 97 ~yL~~lA~~lgIDLeea~~ 115 (132)
-.+..+|..+|+++++.+.
T Consensus 51 ~~l~~ia~~l~~~~~~l~~ 69 (78)
T 3b7h_A 51 TTIRKVCGTLGISVHDFFD 69 (78)
T ss_dssp HHHHHHHHHHTCCHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHhc
Confidence 3577889999999988763
No 47
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.79 E-value=68 Score=18.02 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCHHHHHHH
Q 043241 99 LIRLADICGIDLGDAATK 116 (132)
Q Consensus 99 L~~lA~~lgIDLeea~~~ 116 (132)
+..+|..+|++++..+..
T Consensus 45 l~~la~~l~~~~~~l~~~ 62 (69)
T 1r69_A 45 LPELASALGVSVDWLLNG 62 (69)
T ss_dssp HHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHCcCHHHHhCC
Confidence 678899999999887653
No 48
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=21.57 E-value=1.3e+02 Score=17.51 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043241 94 DVLLYLIRLADICGIDLGDAATKKIVK 120 (132)
Q Consensus 94 DvL~yL~~lA~~lgIDLeea~~~k~~K 120 (132)
.+.-.+..+|..+|++++..+...-..
T Consensus 54 ~l~~~~~~l~~~~~v~~~~l~~~~~~~ 80 (84)
T 2ef8_A 54 ELFELLEVVASRLGLPMDILLKDTYES 80 (84)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCCHHHHHccchhh
Confidence 344566678888999999998776543
No 49
>3o0y_A Lipoprotein; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, lipid protein; 1.70A {Colwellia psychrerythraea}
Probab=20.51 E-value=80 Score=27.51 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=42.2
Q ss_pred ecchhhhhHHHHhhhhhccCCCchHHHHHhhhhccCCHHHHHHHHHHh
Q 043241 7 ISGSEVGHFRSIADSEEAKNMREGEEINADERVMDISLKDLSKQLEEF 54 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~m~~~eYq~~a~~t~~~~~~~l~~~l~~f 54 (132)
+..-++.++|..+....+...++.+|....+..-.+|+.-+.+.+..|
T Consensus 558 ~G~~~i~~LR~~a~~~lG~~Fdlk~FHd~vL~~G~~Pl~vL~~~v~~w 605 (609)
T 3o0y_A 558 LGMLKILSLREQAKARLGDKFDLAEFHDVVLLNGAVPMAVLSRNVNHW 605 (609)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 444577889999999999999999999999999999999888888765
No 50
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical binding protein, RNA binding protein; 3.30A {Beet yellows virus}
Probab=20.42 E-value=64 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Q 043241 98 YLIRLADICGIDLGDAATKKIVKNAI 123 (132)
Q Consensus 98 yL~~lA~~lgIDLeea~~~k~~K~~~ 123 (132)
+|-..|+..|+.-++|++.||.|.++
T Consensus 129 fl~eycri~gl~redalrekmrkv~s 154 (197)
T 2cwo_A 129 FLEEYCRITGLAREDALREKMRKVKS 154 (197)
T ss_dssp HHHHHHHHHCCCHHHHHHSBHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhh
Confidence 56678999999999999999999875
Done!