BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043245
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 186 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW---------- 235
Query: 84 RELFPLTSDLNGSVIDVHYY----------NSNKSMTVQQNIDF---------VCTNRSA 124
+ V+D H+Y N N ++V N + V SA
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGQWSA 295
Query: 125 QL----------NQITTPDG------------PLIFVGEWVAELPVPEASKEDLQRFAKA 162
L N+ +G PL+ + +W E K D +R+ +A
Sbjct: 296 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDE------HKTDTRRYIEA 349
Query: 163 QQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENG 198
Q + + T GW +W+ KT N WS + + NG
Sbjct: 350 QLDAF-EYTGGWVFWSWKTEN--APEWSFQTLTYNG 382
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 180 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW---------- 229
Query: 84 RELFPLTSDLNGSVIDVHYY----------NSNKSMTVQQNIDF---------VCTNRSA 124
+ V+D H+Y N N ++V N + V SA
Sbjct: 230 NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSA 289
Query: 125 QL----------NQITTPDG------------PLIFVGEWVAELPVPEASKEDLQRFAKA 162
L N+ +G PL+ + +W E K D +R+ +A
Sbjct: 290 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDE------HKTDTRRYIEA 343
Query: 163 QQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENG 198
Q + + T GW +W+ KT N WS + + NG
Sbjct: 344 QLDAF-EYTGGWVFWSWKTEN--APEWSFQTLTYNG 376
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 186 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW---------- 235
Query: 84 RELFPLTSDLNGSVIDVHYY----------NSNKSMTVQQNIDF---------VCTNRSA 124
+ V+D H+Y N N ++V N + V SA
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVISGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSA 295
Query: 125 QL----------NQITTPDG------------PLIFVGEWVAELPVPEASKEDLQRFAKA 162
L N+ +G PL+ + +W E K D +R+ +A
Sbjct: 296 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDE------HKTDTRRYIEA 349
Query: 163 QQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENG 198
Q + + T GW +W+ KT N WS + + NG
Sbjct: 350 QLDAF-EYTGGWVFWSWKTEN--APEWSFQTLTYNG 382
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 186 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW---------- 235
Query: 84 RELFPLTSDLNGSVIDVHYY----------NSNKSMTVQQNIDF---------VCTNRSA 124
+ V+D H+Y N N ++V N + V SA
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSA 295
Query: 125 QL----------NQITTPDG------------PLIFVGEWVAELPVPEASKEDLQRFAKA 162
L N+ +G PL+ + +W E K D +R+ +A
Sbjct: 296 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDE------HKTDTRRYIEA 349
Query: 163 QQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENG 198
Q + + T GW +W+ KT N WS + + NG
Sbjct: 350 QLDAF-EYTGGWVFWSWKTEN--APEWSFQTLTYNG 382
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 180 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW---------- 229
Query: 84 RELFPLTSDLNGSVIDVHYY----------NSNKSMTVQQNIDF---------VCTNRSA 124
+ V+D H+Y N N ++V N + V SA
Sbjct: 230 NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSA 289
Query: 125 QL----------NQITTPDG------------PLIFVGEWVAELPVPEASKEDLQRFAKA 162
L N+ +G PL+ + +W E K D +R+ +A
Sbjct: 290 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDE------HKTDTRRYIEA 343
Query: 163 QQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENG 198
Q + + T GW +W+ KT N WS + + NG
Sbjct: 344 QLDAF-EYTGGWVFWSWKTEN--APEWSFQTLTYNG 376
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 186 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW---------- 235
Query: 84 RELFPLTSDLNGSVIDVHYY----------NSNKSMTVQQNIDF---------VCTNRSA 124
+ V+D H+Y N N ++V N + V SA
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSA 295
Query: 125 QL----------NQITTPDG------------PLIFVGEWVAELPVPEASKEDLQRFAKA 162
L N+ +G PL+ + +W E K D +R+ +A
Sbjct: 296 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDE------HKTDTRRYIEA 349
Query: 163 QQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENG 198
Q + + T GW +W+ KT N WS + + NG
Sbjct: 350 QLDAF-EYTGGWVFWSWKTEN--APEWSFQTLTYNG 382
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 185 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW---------- 234
Query: 84 RELFPLTSDLNGSVIDVHYY----------NSNKSMTVQQNIDF---------VCTNRSA 124
+ V+D H+Y N N ++V N + V SA
Sbjct: 235 NNFLTVAEGQWNVVVDHHHYQVYSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSA 294
Query: 125 QL----------NQITTPDG------------PLIFVGEWVAELPVPEASKEDLQRFAKA 162
L N+ +G PL+ + +W E K D +R+ +A
Sbjct: 295 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDE------HKTDTRRYIEA 348
Query: 163 QQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENG 198
Q + + T GW +W+ KT N WS + + NG
Sbjct: 349 QLDAF-EYTGGWVFWSWKTEN--APEWSFQTLTYNG 381
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 48/210 (22%)
Query: 24 AVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83
+EL+NEPL P +++++L +++ GY+++R V++ +
Sbjct: 185 GIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAAQVFGYW---------- 234
Query: 84 RELFPLTSDLNGSVIDVHYY----NSNKSMTVQQNIDFVC-----TNRSAQLNQITTPDG 134
+ V+D H+Y S + +I C + + N +
Sbjct: 235 NNFLTVAEGQWNVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGSWSA 294
Query: 135 PLIFVGEWVAEL--------------------PVPEAS------KEDLQRFAKAQQEVYG 168
L +W+ + P+ + S K D +R+ +AQ + +
Sbjct: 295 ALTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDISQWSDEHKTDTRRYIEAQLDAF- 353
Query: 169 NATFGWGYWTLKTLNNERKHWSLEWMIENG 198
T GW +W+ KT N WS + + NG
Sbjct: 354 EYTGGWVFWSWKTEN--APEWSFQTLTYNG 381
>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
Length = 408
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 24 AVELINEPLSPGVSLERL-NKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRD 82
+ELINEPL P + ++++ N Y Y+ +RN+ + V++ P +
Sbjct: 186 GIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHD----------AFQPYN 235
Query: 83 PRELFPLTSD-LNGSVIDVHYYNSNKSMTVQQNID----FVCTNRSAQLNQITTPDGPLI 137
+ F +D G ID H+Y S ++++ID C + LN+ I
Sbjct: 236 YWDDFMTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNE-----SHWI 290
Query: 138 FVGEWVAEL 146
GE+ A L
Sbjct: 291 VCGEFAAAL 299
>pdb|1T47|A Chain A, Structure Of Fe2-Hppd Bound To Ntbc
pdb|1T47|B Chain B, Structure Of Fe2-Hppd Bound To Ntbc
Length = 381
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 115 IDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPVPEASKEDLQRFAKAQQEVY 167
++ V T R+A + + TPD +GEWV + VP + +L+ A ++ Y
Sbjct: 279 VETVRTMRAAGVQFLDTPDSYYDTLGEWVGDTRVPVDTLRELKILADRDEDGY 331
>pdb|2KHA|A Chain A, Solution Structure Of A Pathogen Recognition Domain From A
Lepidopteran Insect, Plodia Interpunctella
Length = 130
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 60 YVVMSSRIEPIDPSGLGPMDPRDPRELFPLTSDLNGSVIDVHYYNSNKSMTVQQNIDFVC 119
YVV S+++E I P GL P D LF LN + + + + +T + +
Sbjct: 12 YVVPSAKLEAIYPRGLRVSIPDDGFSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWTF 71
Query: 120 TNRSAQLN 127
+R+A+L
Sbjct: 72 RDRNAKLK 79
>pdb|2POR|A Chain A, Structure Of Porin Refined At 1.8 Angstroms Resolution
pdb|3POR|A Chain A, Porin Conformation In The Absence Of Calcium; Refined
Structure At 2.5 Angstroms Resolution
Length = 301
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 128 QITTPDGPLIF---------VGEWVAELPVPEASKEDLQRFAKAQQEVYGNATFGWGYWT 178
++T D P++ V +++ V E S++D Q A A +GN T G GY
Sbjct: 110 RLTAEDNPVLLYTYSAGAFSVAASMSDGKVGETSEDDAQEMAVAAAYTFGNYTVGLGYEK 169
Query: 179 LKT 181
+ +
Sbjct: 170 IDS 172
>pdb|3AQY|A Chain A, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain
pdb|3AQY|B Chain B, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain
pdb|3AQZ|A Chain A, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain With Laminarihexaoses
pdb|3AQZ|B Chain B, Crystal Structure Of Plodia Interpunctella Beta-GrpGNBP3
N-Terminal Domain With Laminarihexaoses
Length = 106
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 59 AYVVMSSRIEPIDPSGLGPMDPRDPRELFPLTSDLNGSVIDVHYYNSNKSMTVQQNIDFV 118
+YVV S+++E I P GL P D LF LN + + + + +T + +
Sbjct: 2 SYVVPSAKLEAIYPKGLRVSIPDDGFSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWT 61
Query: 119 CTNRSAQLN 127
+R+ +L
Sbjct: 62 FRDRNVKLK 70
>pdb|2P91|A Chain A, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|B Chain B, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|C Chain C, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|D Chain D, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
Length = 285
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 84 RELFPLTSDLNGSVIDVHYYNSNK 107
REL PL NG+++ + YY + K
Sbjct: 143 RELLPLMEGRNGAIVTLSYYGAEK 166
>pdb|1KSA|A Chain A, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|1KSA|B Chain B, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|3BSD|A Chain A, Light Harvesting Protein From Rc Of Chlorobium Tepidum
Length = 366
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 20 PSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMD 79
P+ V+L +PL P R++ +++ D+ +N + + E G G +
Sbjct: 46 PADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKNKLTIEADIANETKERRISVGEGMVS 105
Query: 80 PRDPRELFPLTSDLNGSVIDVHYYNSNKSMTVQQNI 115
D F T GSV+++ YY S+ V++N+
Sbjct: 106 VGD----FSHTFSFEGSVVNLFYYRSD---AVRRNV 134
>pdb|3ENI|A Chain A, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
pdb|3ENI|C Chain C, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
Length = 365
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 20 PSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMD 79
P+ V+L +PL P R++ +++ D+ +N + + E G G +
Sbjct: 45 PADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKNKLTIEADIANETKERRISVGEGMVS 104
Query: 80 PRDPRELFPLTSDLNGSVIDVHYYNSNKSMTVQQNI 115
D F T GSV+++ YY S+ V++N+
Sbjct: 105 VGD----FSHTFSFEGSVVNLFYYRSD---AVRRNV 133
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 37 SLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDPRELFPLTSDLNG 95
S ER KY Y+A+RN A + P PS LG +EL P +S G
Sbjct: 19 SHERAIKYLNQDYEALRNECLEAGTLFQDPSFPAIPSALG------FKELGPYSSKTRG 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,495,280
Number of Sequences: 62578
Number of extensions: 261405
Number of successful extensions: 581
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 25
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)