Query 043245
Match_columns 202
No_of_seqs 126 out of 1014
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 99.9 7.6E-22 1.6E-26 163.0 11.3 163 4-183 104-281 (281)
2 COG2730 BglC Endoglucanase [Ca 99.5 1.2E-13 2.7E-18 120.7 10.2 194 1-200 161-381 (407)
3 PRK10150 beta-D-glucuronidase; 98.6 2.4E-06 5.1E-11 78.6 16.3 156 5-181 392-557 (604)
4 smart00633 Glyco_10 Glycosyl h 98.3 6.3E-05 1.4E-09 61.9 15.1 154 3-181 57-228 (254)
5 PF12876 Cellulase-like: Sugar 98.0 1.4E-05 3E-10 55.2 5.4 53 12-64 1-63 (88)
6 PF02836 Glyco_hydro_2_C: Glyc 97.8 0.00042 9.2E-09 58.2 11.7 56 3-66 104-159 (298)
7 PF07745 Glyco_hydro_53: Glyco 97.5 0.0013 2.8E-08 56.2 10.2 152 3-178 110-295 (332)
8 COG3934 Endo-beta-mannanase [C 97.4 0.00051 1.1E-08 60.5 6.6 153 6-181 123-280 (587)
9 PF11790 Glyco_hydro_cc: Glyco 97.2 0.012 2.5E-07 48.1 13.0 142 7-169 54-200 (239)
10 PF00331 Glyco_hydro_10: Glyco 96.9 0.0061 1.3E-07 51.9 9.1 155 4-182 107-288 (320)
11 COG3693 XynA Beta-1,4-xylanase 96.2 0.17 3.7E-06 42.9 12.8 121 4-146 126-262 (345)
12 COG3867 Arabinogalactan endo-1 95.8 0.31 6.7E-06 41.1 12.1 140 23-178 173-341 (403)
13 PF14488 DUF4434: Domain of un 94.8 0.17 3.8E-06 39.0 7.4 63 2-67 101-163 (166)
14 PF13204 DUF4038: Protein of u 94.2 0.14 3E-06 43.0 6.2 116 2-144 128-243 (289)
15 PF14587 Glyco_hydr_30_2: O-Gl 94.0 0.8 1.7E-05 39.9 10.5 65 2-66 153-227 (384)
16 PF02449 Glyco_hydro_42: Beta- 93.9 0.16 3.4E-06 44.1 6.2 31 3-33 110-140 (374)
17 PRK09525 lacZ beta-D-galactosi 93.9 0.76 1.7E-05 45.3 11.4 54 4-65 436-489 (1027)
18 PF01229 Glyco_hydro_39: Glyco 91.2 0.36 7.7E-06 43.5 4.9 163 8-180 141-323 (486)
19 KOG2233 Alpha-N-acetylglucosam 89.6 1.2 2.5E-05 40.1 6.4 59 5-63 222-280 (666)
20 PRK10340 ebgA cryptic beta-D-g 86.8 2 4.4E-05 42.4 6.9 52 5-64 424-475 (1021)
21 PF02055 Glyco_hydro_30: O-Gly 84.4 6.5 0.00014 35.7 8.5 161 8-190 209-390 (496)
22 PF03662 Glyco_hydro_79n: Glyc 82.7 0.13 2.9E-06 43.8 -2.8 116 21-148 165-299 (319)
23 KOG2566 Beta-glucocerebrosidas 78.7 47 0.001 29.4 12.8 158 10-189 236-414 (518)
24 PF12891 Glyco_hydro_44: Glyco 73.3 12 0.00026 30.6 5.9 60 6-66 107-179 (239)
25 TIGR03356 BGL beta-galactosida 72.3 21 0.00044 31.8 7.8 30 2-33 135-164 (427)
26 PF02449 Glyco_hydro_42: Beta- 71.4 35 0.00076 29.5 8.9 24 39-62 209-232 (374)
27 PF05089 NAGLU: Alpha-N-acetyl 68.5 22 0.00048 30.5 6.8 89 4-101 158-250 (333)
28 cd04502 SGNH_hydrolase_like_7 68.2 39 0.00084 25.2 7.7 58 6-64 36-95 (171)
29 COG5520 O-Glycosyl hydrolase [ 62.4 1.1E+02 0.0024 26.9 13.5 151 7-183 153-313 (433)
30 COG5309 Exo-beta-1,3-glucanase 60.9 1E+02 0.0022 26.0 13.8 145 17-177 129-279 (305)
31 KOG2230 Predicted beta-mannosi 59.9 64 0.0014 30.1 8.3 91 6-106 420-524 (867)
32 COG1121 ZnuC ABC-type Mn/Zn tr 54.1 49 0.0011 27.3 6.2 51 11-66 149-199 (254)
33 PF10035 DUF2179: Uncharacteri 54.0 17 0.00036 22.1 2.8 22 45-66 29-50 (55)
34 COG1116 TauB ABC-type nitrate/ 51.0 52 0.0011 27.1 5.9 51 11-65 140-190 (248)
35 PF03464 eRF1_2: eRF1 domain 2 50.8 29 0.00063 25.3 4.1 30 39-68 50-85 (133)
36 PF13200 DUF4015: Putative gly 48.6 1.2E+02 0.0026 25.9 7.9 136 38-179 169-312 (316)
37 KOG1573 Aldehyde reductase [Ge 48.5 16 0.00035 28.1 2.4 58 2-60 51-116 (204)
38 cd03300 ABC_PotA_N PotA is an 44.2 91 0.002 24.7 6.4 36 12-51 141-176 (232)
39 PRK10771 thiQ thiamine transpo 43.9 91 0.002 24.7 6.3 38 12-53 140-177 (232)
40 KOG3446 NADH:ubiquinone oxidor 42.9 29 0.00062 23.7 2.6 29 38-66 29-57 (97)
41 KOG4589 Cell division protein 42.6 54 0.0012 26.2 4.5 57 8-65 82-143 (232)
42 cd03230 ABC_DR_subfamily_A Thi 42.0 92 0.002 23.4 5.8 32 11-46 105-136 (173)
43 COG1120 FepC ABC-type cobalami 41.8 1E+02 0.0023 25.5 6.3 53 10-66 147-199 (258)
44 cd03290 ABCC_SUR1_N The SUR do 40.7 98 0.0021 24.2 6.0 41 12-56 151-192 (218)
45 COG1844 Uncharacterized protei 40.6 98 0.0021 22.4 5.2 21 47-67 70-91 (125)
46 PRK09852 cryptic 6-phospho-bet 40.1 44 0.00095 30.2 4.2 52 129-180 360-422 (474)
47 PRK00865 glutamate racemase; P 40.0 1.6E+02 0.0035 24.1 7.3 57 6-63 18-74 (261)
48 TIGR02982 heterocyst_DevA ABC 39.9 1.2E+02 0.0026 23.8 6.4 38 12-54 152-189 (220)
49 PRK09580 sufC cysteine desulfu 39.1 1.1E+02 0.0024 24.4 6.1 40 12-56 156-195 (248)
50 PLN02849 beta-glucosidase 38.3 52 0.0011 30.0 4.4 51 130-180 380-440 (503)
51 cd03258 ABC_MetN_methionine_tr 38.3 1.3E+02 0.0028 23.7 6.4 34 12-49 151-184 (233)
52 PF00232 Glyco_hydro_1: Glycos 37.8 19 0.00042 32.1 1.6 64 132-199 352-426 (455)
53 cd01836 FeeA_FeeB_like SGNH_hy 37.5 1.8E+02 0.0038 21.9 7.7 58 6-64 54-112 (191)
54 TIGR01277 thiQ thiamine ABC tr 37.3 1.4E+02 0.0031 23.1 6.5 33 13-49 140-172 (213)
55 PRK09984 phosphonate/organopho 37.2 1.2E+02 0.0027 24.4 6.2 32 12-47 163-194 (262)
56 cd03256 ABC_PhnC_transporter A 36.8 1.3E+02 0.0028 23.8 6.2 31 13-47 156-186 (241)
57 cd02068 radical_SAM_B12_BD B12 36.4 1.6E+02 0.0034 20.9 6.5 40 18-67 38-77 (127)
58 TIGR03415 ABC_choXWV_ATP choli 36.2 1.2E+02 0.0027 26.5 6.3 50 12-65 175-224 (382)
59 cd03261 ABC_Org_Solvent_Resist 36.2 1.4E+02 0.0031 23.6 6.3 32 12-47 147-178 (235)
60 PF09875 DUF2102: Uncharacteri 36.1 70 0.0015 22.6 3.8 30 43-72 42-71 (104)
61 cd01828 sialate_O-acetylestera 36.0 1.8E+02 0.0038 21.4 8.1 58 7-65 36-94 (169)
62 PRK10247 putative ABC transpor 35.6 1.4E+02 0.0031 23.5 6.2 32 12-47 148-179 (225)
63 cd03297 ABC_ModC_molybdenum_tr 35.5 1.5E+02 0.0033 23.0 6.3 31 12-46 142-172 (214)
64 cd03257 ABC_NikE_OppD_transpor 35.3 1.6E+02 0.0035 23.0 6.5 33 13-49 157-189 (228)
65 TIGR03864 PQQ_ABC_ATP ABC tran 35.2 1.5E+02 0.0033 23.4 6.4 35 12-50 143-177 (236)
66 TIGR03005 ectoine_ehuA ectoine 35.1 1.4E+02 0.0031 23.9 6.2 31 12-46 157-187 (252)
67 TIGR01184 ntrCD nitrate transp 34.7 1.6E+02 0.0034 23.3 6.4 34 16-53 129-162 (230)
68 PF02208 Sorb: Sorbin homologo 34.4 45 0.00097 19.9 2.2 37 20-56 4-40 (47)
69 cd03298 ABC_ThiQ_thiamine_tran 34.0 1.7E+02 0.0036 22.7 6.3 32 13-48 140-171 (211)
70 PRK10418 nikD nickel transport 33.4 1.6E+02 0.0036 23.6 6.4 33 12-48 151-183 (254)
71 cd03293 ABC_NrtD_SsuB_transpor 33.3 1.7E+02 0.0037 22.8 6.3 33 13-49 143-175 (220)
72 cd03296 ABC_CysA_sulfate_impor 33.3 1.7E+02 0.0036 23.3 6.3 31 12-46 147-177 (239)
73 cd03301 ABC_MalK_N The N-termi 33.2 1.7E+02 0.0038 22.6 6.3 31 12-46 141-171 (213)
74 cd03250 ABCC_MRP_domain1 Domai 33.0 1.4E+02 0.0031 22.9 5.8 37 12-52 138-174 (204)
75 PRK11432 fbpC ferric transport 32.6 1.4E+02 0.0031 25.7 6.1 41 12-56 147-187 (351)
76 PLN02814 beta-glucosidase 32.5 64 0.0014 29.4 4.0 51 130-180 382-440 (504)
77 TIGR03265 PhnT2 putative 2-ami 32.2 1.4E+02 0.0031 25.7 6.0 40 13-56 146-185 (353)
78 cd03265 ABC_DrrA DrrA is the A 32.1 1.9E+02 0.004 22.6 6.3 33 12-48 142-174 (220)
79 PRK11650 ugpC glycerol-3-phosp 32.1 1.6E+02 0.0035 25.4 6.3 37 12-53 145-181 (356)
80 PRK14258 phosphate ABC transpo 32.0 1.8E+02 0.0038 23.6 6.3 33 13-49 162-194 (261)
81 PF02995 DUF229: Protein of un 31.9 2.4E+02 0.0053 25.6 7.7 62 3-65 276-341 (497)
82 cd03295 ABC_OpuCA_Osmoprotecti 31.8 1.8E+02 0.0038 23.1 6.2 30 12-45 146-175 (242)
83 PRK11124 artP arginine transpo 31.6 1.7E+02 0.0038 23.2 6.2 40 12-56 152-191 (242)
84 PRK11607 potG putrescine trans 31.6 1.4E+02 0.003 26.0 5.9 41 12-56 160-200 (377)
85 PRK10575 iron-hydroxamate tran 31.3 1.8E+02 0.0039 23.6 6.3 35 12-50 158-192 (265)
86 cd03259 ABC_Carb_Solutes_like 31.2 2E+02 0.0044 22.2 6.4 30 12-45 141-170 (213)
87 TIGR01187 potA spermidine/putr 31.0 1.7E+02 0.0037 24.7 6.3 38 13-54 112-149 (325)
88 PRK09452 potA putrescine/sperm 30.8 1.8E+02 0.0038 25.4 6.4 41 12-56 155-195 (375)
89 PRK13634 cbiO cobalt transport 30.8 1.6E+02 0.0036 24.3 6.1 38 12-54 156-193 (290)
90 PRK09589 celA 6-phospho-beta-g 30.7 80 0.0017 28.5 4.4 52 129-180 362-425 (476)
91 TIGR02315 ABC_phnC phosphonate 30.6 2E+02 0.0043 22.8 6.3 29 13-45 157-185 (243)
92 PRK13370 mhpB 3-(2,3-dihydroxy 30.4 68 0.0015 27.3 3.7 37 29-67 17-53 (313)
93 PRK15112 antimicrobial peptide 30.4 1.7E+02 0.0038 23.7 6.1 32 12-47 160-191 (267)
94 cd03229 ABC_Class3 This class 30.4 2.1E+02 0.0047 21.5 6.2 32 12-47 111-142 (178)
95 cd03233 ABC_PDR_domain1 The pl 30.2 2.1E+02 0.0045 22.2 6.2 35 11-49 128-162 (202)
96 PF02310 B12-binding: B12 bind 30.2 1.9E+02 0.004 20.0 6.3 39 19-66 51-89 (121)
97 PLN02433 uroporphyrinogen deca 30.1 84 0.0018 26.9 4.2 63 3-65 171-239 (345)
98 PRK09593 arb 6-phospho-beta-gl 30.1 72 0.0016 28.8 4.0 51 130-180 364-426 (478)
99 TIGR02211 LolD_lipo_ex lipopro 30.0 2.2E+02 0.0047 22.2 6.4 30 13-46 153-182 (221)
100 PRK13650 cbiO cobalt transport 29.9 1.8E+02 0.0039 23.9 6.1 30 12-45 151-180 (279)
101 PRK13633 cobalt transporter AT 29.9 1.8E+02 0.0039 23.8 6.1 31 12-46 155-185 (280)
102 CHL00131 ycf16 sulfate ABC tra 29.9 1.9E+02 0.0041 23.1 6.1 29 16-48 166-194 (252)
103 cd03292 ABC_FtsE_transporter F 29.9 2.1E+02 0.0045 22.1 6.2 31 12-46 147-177 (214)
104 TIGR02770 nickel_nikD nickel i 29.6 2E+02 0.0043 22.7 6.1 30 12-45 136-165 (230)
105 PRK11231 fecE iron-dicitrate t 29.5 2E+02 0.0042 23.1 6.2 31 12-46 149-179 (255)
106 cd03214 ABC_Iron-Siderophores_ 29.3 2.3E+02 0.0051 21.3 6.3 38 12-54 108-145 (180)
107 TIGR00968 3a0106s01 sulfate AB 29.2 2.2E+02 0.0047 22.6 6.3 46 13-63 142-187 (237)
108 PRK11831 putative ABC transpor 29.1 2.1E+02 0.0046 23.2 6.4 32 12-47 154-185 (269)
109 cd03267 ABC_NatA_like Similar 28.7 2.2E+02 0.0048 22.6 6.3 31 12-46 164-194 (236)
110 PRK13646 cbiO cobalt transport 28.7 1.9E+02 0.004 23.9 6.0 37 12-53 156-192 (286)
111 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 28.7 2.1E+02 0.0045 22.5 6.1 34 12-49 153-186 (224)
112 TIGR01233 lacG 6-phospho-beta- 28.6 76 0.0016 28.6 3.8 51 130-180 361-423 (467)
113 TIGR03356 BGL beta-galactosida 28.6 81 0.0018 28.0 4.0 51 130-180 332-393 (427)
114 COG4181 Predicted ABC-type tra 28.4 2.4E+02 0.0052 22.5 6.0 52 11-66 156-207 (228)
115 PRK11300 livG leucine/isoleuci 28.4 2.3E+02 0.0049 22.7 6.4 27 16-46 168-194 (255)
116 PRK15014 6-phospho-beta-glucos 28.3 83 0.0018 28.5 4.0 52 129-180 363-426 (477)
117 PRK13642 cbiO cobalt transport 28.3 2E+02 0.0043 23.6 6.1 36 12-51 151-186 (277)
118 PF10049 DUF2283: Protein of u 28.2 47 0.001 20.0 1.7 14 16-29 35-48 (50)
119 PLN02998 beta-glucosidase 28.1 80 0.0017 28.7 3.9 51 130-180 387-445 (497)
120 cd03213 ABCG_EPDR ABCG transpo 28.1 2.3E+02 0.0049 21.8 6.1 38 12-54 122-159 (194)
121 TIGR01186 proV glycine betaine 28.0 2E+02 0.0042 25.0 6.2 50 12-65 140-189 (363)
122 cd03255 ABC_MJ0796_Lo1CDE_FtsE 28.0 2.7E+02 0.0058 21.6 6.6 38 12-54 151-188 (218)
123 PF05047 L51_S25_CI-B8: Mitoch 27.7 76 0.0016 18.9 2.6 25 41-65 1-25 (52)
124 TIGR01166 cbiO cobalt transpor 27.6 2.5E+02 0.0054 21.3 6.2 37 13-54 139-175 (190)
125 cd03294 ABC_Pro_Gly_Bertaine T 27.6 2.4E+02 0.0051 23.0 6.4 34 12-49 171-204 (269)
126 cd03299 ABC_ModC_like Archeal 27.6 2.4E+02 0.0052 22.3 6.3 33 12-48 140-172 (235)
127 PRK11614 livF leucine/isoleuci 27.4 2.1E+02 0.0046 22.6 6.0 28 17-48 153-180 (237)
128 cd03232 ABC_PDR_domain2 The pl 27.3 2.5E+02 0.0055 21.4 6.2 39 11-54 118-156 (192)
129 PRK11701 phnK phosphonate C-P 27.3 2.2E+02 0.0049 22.8 6.2 32 12-47 162-193 (258)
130 cd03283 ABC_MutS-like MutS-lik 27.2 2.4E+02 0.0052 22.0 6.1 44 9-56 94-138 (199)
131 PRK09493 glnQ glutamine ABC tr 27.2 2.4E+02 0.0051 22.3 6.2 38 12-54 147-184 (240)
132 PRK13511 6-phospho-beta-galact 27.2 87 0.0019 28.2 4.0 51 130-180 362-425 (469)
133 cd04501 SGNH_hydrolase_like_4 26.9 2.7E+02 0.0058 20.7 7.2 53 5-58 44-98 (183)
134 cd03222 ABC_RNaseL_inhibitor T 26.7 2.7E+02 0.0059 21.3 6.2 33 11-47 81-113 (177)
135 cd06547 GH85_ENGase Endo-beta- 26.7 2.8E+02 0.006 23.9 6.8 61 4-67 90-150 (339)
136 TIGR01189 ccmA heme ABC export 26.6 2.6E+02 0.0057 21.3 6.3 49 12-65 138-186 (198)
137 PRK10253 iron-enterobactin tra 26.6 2.3E+02 0.0051 22.9 6.2 32 12-47 154-185 (265)
138 PRK11629 lolD lipoprotein tran 26.6 2.7E+02 0.0058 21.9 6.4 37 12-53 156-192 (233)
139 PRK13637 cbiO cobalt transport 26.4 2.3E+02 0.005 23.4 6.2 32 12-47 155-186 (287)
140 TIGR01978 sufC FeS assembly AT 26.2 2.5E+02 0.0053 22.2 6.2 26 17-46 160-185 (243)
141 cd03231 ABC_CcmA_heme_exporter 26.1 2.8E+02 0.0061 21.3 6.3 38 12-54 136-173 (201)
142 PRK10584 putative ABC transpor 25.9 2.9E+02 0.0062 21.6 6.5 31 12-46 157-187 (228)
143 COG4604 CeuD ABC-type enteroch 25.9 1.8E+02 0.0038 23.7 4.9 41 25-66 156-196 (252)
144 cd01833 XynB_like SGNH_hydrola 25.8 1.5E+02 0.0032 21.5 4.5 46 19-65 40-86 (157)
145 cd03215 ABC_Carb_Monos_II This 25.7 2.9E+02 0.0064 20.8 6.4 39 11-54 114-152 (182)
146 PRK13540 cytochrome c biogenes 25.6 2.7E+02 0.0058 21.3 6.1 46 12-63 138-183 (200)
147 TIGR03608 L_ocin_972_ABC putat 25.6 2.8E+02 0.006 21.2 6.2 31 13-47 146-176 (206)
148 TIGR02142 modC_ABC molybdenum 25.4 2.5E+02 0.0054 24.1 6.3 36 12-51 142-177 (354)
149 PRK14250 phosphate ABC transpo 25.3 2.7E+02 0.0059 22.1 6.3 38 12-54 142-179 (241)
150 PRK11144 modC molybdate transp 25.1 2.6E+02 0.0056 23.9 6.4 32 12-47 139-170 (352)
151 COG1136 SalX ABC-type antimicr 24.8 2.7E+02 0.0058 22.6 6.0 51 12-66 153-203 (226)
152 TIGR02314 ABC_MetN D-methionin 24.8 2.5E+02 0.0054 24.1 6.2 30 12-45 151-180 (343)
153 TIGR02769 nickel_nikE nickel i 24.7 2.8E+02 0.0061 22.4 6.3 32 12-47 161-192 (265)
154 cd00267 ABC_ATPase ABC (ATP-bi 24.7 2.8E+02 0.0061 20.2 6.2 38 12-54 91-128 (157)
155 PRK13645 cbiO cobalt transport 24.6 2.4E+02 0.0051 23.2 5.9 30 13-46 162-191 (289)
156 TIGR03258 PhnT 2-aminoethylpho 24.5 2.5E+02 0.0053 24.3 6.2 38 12-54 148-185 (362)
157 TIGR02323 CP_lyasePhnK phospho 24.5 2.9E+02 0.0063 22.0 6.3 35 12-50 159-193 (253)
158 PRK11264 putative amino-acid A 24.4 2.8E+02 0.006 22.0 6.2 30 13-46 156-185 (250)
159 cd03268 ABC_BcrA_bacitracin_re 24.1 2.8E+02 0.0061 21.3 6.0 38 12-54 137-174 (208)
160 PF01359 Transposase_1: Transp 23.9 2.3E+02 0.0049 18.9 4.6 37 20-58 40-76 (81)
161 PRK09997 hydroxypyruvate isome 23.6 1.8E+02 0.004 23.4 5.0 26 5-30 122-147 (258)
162 cd03266 ABC_NatA_sodium_export 23.6 3.1E+02 0.0066 21.2 6.2 33 12-48 147-179 (218)
163 PF14359 DUF4406: Domain of un 23.6 1.4E+02 0.0031 20.4 3.7 54 7-68 16-70 (92)
164 PRK13635 cbiO cobalt transport 23.6 2.8E+02 0.006 22.8 6.1 31 12-46 151-181 (279)
165 PRK13640 cbiO cobalt transport 23.5 2.8E+02 0.006 22.8 6.1 33 12-48 154-186 (282)
166 TIGR03272 methan_mark_6 putati 23.5 1E+02 0.0023 22.7 3.1 30 43-72 41-70 (132)
167 TIGR02673 FtsE cell division A 23.4 3.2E+02 0.007 21.0 6.3 31 13-47 149-179 (214)
168 PRK11000 maltose/maltodextrin 23.4 2.6E+02 0.0056 24.2 6.1 33 12-48 144-176 (369)
169 cd01822 Lysophospholipase_L1_l 23.4 3E+02 0.0065 20.1 6.7 30 28-58 74-103 (177)
170 PRK13652 cbiO cobalt transport 23.4 2.9E+02 0.0064 22.5 6.2 32 12-47 148-179 (277)
171 cd03246 ABCC_Protease_Secretio 23.3 3.2E+02 0.007 20.4 6.2 38 12-54 107-144 (173)
172 PF14606 Lipase_GDSL_3: GDSL-l 23.3 1.1E+02 0.0023 23.9 3.3 41 21-67 61-102 (178)
173 PRK11248 tauB taurine transpor 23.3 3.2E+02 0.0069 22.1 6.3 28 16-47 143-170 (255)
174 PF13174 TPR_6: Tetratricopept 23.2 85 0.0018 15.8 2.0 17 2-18 16-32 (33)
175 PRK11022 dppD dipeptide transp 22.9 2.7E+02 0.0058 23.6 6.0 46 16-65 168-213 (326)
176 cd03219 ABC_Mj1267_LivG_branch 22.9 3.3E+02 0.0072 21.3 6.3 28 16-47 158-185 (236)
177 PRK13543 cytochrome c biogenes 22.8 3.3E+02 0.0071 21.2 6.2 40 12-56 148-187 (214)
178 KOG4115 Dynein-associated prot 22.8 2.8E+02 0.006 19.4 6.4 51 7-58 3-64 (97)
179 PRK13538 cytochrome c biogenes 22.7 3.5E+02 0.0076 20.8 6.3 38 12-54 140-177 (204)
180 cd03224 ABC_TM1139_LivF_branch 22.4 3.5E+02 0.0077 20.9 6.3 27 17-47 148-174 (222)
181 cd03226 ABC_cobalt_CbiO_domain 22.4 3.4E+02 0.0073 20.8 6.1 38 12-54 137-174 (205)
182 cd00384 ALAD_PBGS Porphobilino 22.3 2.3E+02 0.0049 24.3 5.2 57 5-63 53-109 (314)
183 cd03225 ABC_cobalt_CbiO_domain 22.2 3.4E+02 0.0074 20.8 6.2 27 16-46 149-175 (211)
184 PRK11247 ssuB aliphatic sulfon 22.1 3.4E+02 0.0074 22.0 6.3 33 13-49 145-177 (257)
185 PRK13644 cbiO cobalt transport 22.0 3.1E+02 0.0066 22.4 6.1 38 12-54 147-184 (274)
186 PRK10908 cell division protein 22.0 3.5E+02 0.0076 21.0 6.2 38 12-54 148-185 (222)
187 PRK13636 cbiO cobalt transport 22.0 3.3E+02 0.0072 22.3 6.3 32 15-50 155-186 (283)
188 PRK15079 oligopeptide ABC tran 21.9 3.2E+02 0.007 23.2 6.3 48 13-65 173-221 (331)
189 PRK10851 sulfate/thiosulfate t 21.9 3.2E+02 0.0069 23.5 6.3 38 12-54 147-184 (353)
190 cd03217 ABC_FeS_Assembly ABC-t 21.9 3.7E+02 0.0081 20.6 6.3 33 12-48 115-147 (200)
191 PRK10419 nikE nickel transport 21.8 3.3E+02 0.0072 22.1 6.2 30 12-45 162-191 (268)
192 PRK13648 cbiO cobalt transport 21.7 3.1E+02 0.0067 22.2 6.0 32 12-47 153-184 (269)
193 cd03234 ABCG_White The White s 21.7 3.3E+02 0.0072 21.3 6.0 32 18-54 160-191 (226)
194 cd03216 ABC_Carb_Monos_I This 21.6 3.4E+02 0.0074 20.1 6.2 32 11-46 92-123 (163)
195 PRK13539 cytochrome c biogenes 21.4 3.8E+02 0.0083 20.7 6.3 31 12-46 138-168 (207)
196 PRK13639 cbiO cobalt transport 21.3 3.4E+02 0.0074 22.1 6.2 32 12-47 148-179 (275)
197 TIGR03740 galliderm_ABC gallid 21.2 3.5E+02 0.0075 21.1 6.1 34 12-49 135-168 (223)
198 PRK09536 btuD corrinoid ABC tr 21.0 3.1E+02 0.0067 24.2 6.1 30 12-45 150-179 (402)
199 TIGR03410 urea_trans_UrtE urea 21.0 3.8E+02 0.0083 20.9 6.3 37 13-54 143-179 (230)
200 cd07951 ED_3B_N_AMMECR1 The N- 20.9 1.7E+02 0.0036 23.7 4.2 31 38-68 20-50 (256)
201 PRK14269 phosphate ABC transpo 20.9 3.2E+02 0.0069 21.7 5.9 31 12-46 153-183 (246)
202 PF00962 A_deaminase: Adenosin 20.7 4.9E+02 0.011 21.6 7.2 50 9-67 153-202 (331)
203 cd03237 ABC_RNaseL_inhibitor_d 20.7 3.9E+02 0.0084 21.5 6.3 30 12-45 126-155 (246)
204 PRK09544 znuC high-affinity zi 20.7 3.8E+02 0.0082 21.6 6.3 38 12-54 131-168 (251)
205 PRK11308 dppF dipeptide transp 20.7 3.6E+02 0.0077 22.9 6.3 45 17-65 170-214 (327)
206 PRK13364 protocatechuate 4,5-d 20.2 1.6E+02 0.0034 24.7 3.9 27 39-65 31-57 (278)
207 PF00390 malic: Malic enzyme, 20.2 83 0.0018 24.7 2.1 42 26-68 123-170 (182)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.87 E-value=7.6e-22 Score=162.97 Aligned_cols=163 Identities=20% Similarity=0.284 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC-------hHHHHHHHHHHHHHHHhcCCCcEEEEcCC-CCCCCCCCC
Q 043245 4 KSFQILTTCNFRYASCPSLYAVELINEPLSPGVS-------LERLNKYYKAGYDAVRNHSPTAYVVMSSR-IEPIDPSGL 75 (202)
Q Consensus 4 ~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~-------~~~l~~~y~~a~~~IR~~~~~~~iii~d~-~~~~~~~~~ 75 (202)
...++|+.||+||++++.|+||||+|||.....+ ...+.+||++++++||+++|+++|++++. |..
T Consensus 104 ~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~------ 177 (281)
T PF00150_consen 104 WFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGA------ 177 (281)
T ss_dssp HHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHT------
T ss_pred HHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCcccc------
Confidence 4467899999999999999999999999973221 27889999999999999999999988763 321
Q ss_pred CCCCCCCCCC-cCCC-CCCCCceeeeecceeeec---CCC--ccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCC
Q 043245 76 GPMDPRDPRE-LFPL-TSDLNGSVIDVHYYNSNK---SMT--VQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPV 148 (202)
Q Consensus 76 ~~~~~~~~~~-~~~~-~~~~~nvv~d~H~Y~~~~---~~~--~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~ 148 (202)
+... .... .....++++++|.|.++. ... .......+...-...+ ....+.+.|++|||||+....
T Consensus 178 ------~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~pv~~gE~G~~~~~ 250 (281)
T PF00150_consen 178 ------DPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAAL-NWAKKNGKPVVVGEFGWSNND 250 (281)
T ss_dssp ------BHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHH-HHHHHTTSEEEEEEEESSTTT
T ss_pred ------ccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHH-HHHHHcCCeEEEeCcCCcCCC
Confidence 1111 1111 124689999999999862 111 0111111111111111 122346789999999997432
Q ss_pred CccCHHHHHHHHHHHHHHHhhCCccEEEEecccCC
Q 043245 149 PEASKEDLQRFAKAQQEVYGNATFGWGYWTLKTLN 183 (202)
Q Consensus 149 ~~~~~~~~~~~~~~Q~~~~~~~~~Gw~fWt~K~e~ 183 (202)
+. ...++..+.++.+++.++||+||+||.++
T Consensus 251 -~~---~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 281 (281)
T PF00150_consen 251 -GN---GSTDYADAWLDYLEQNGIGWIYWSWKPNS 281 (281)
T ss_dssp -SC---HHHHHHHHHHHHHHHTTCEEEECEESSSS
T ss_pred -CC---cCHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 11 22344555578888889999999999763
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.2e-13 Score=120.74 Aligned_cols=194 Identities=20% Similarity=0.201 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH-hcCCCcEE-EEcCCCCCCCCCCCC--
Q 043245 1 TLMKSFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVR-NHSPTAYV-VMSSRIEPIDPSGLG-- 76 (202)
Q Consensus 1 n~~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR-~~~~~~~i-ii~d~~~~~~~~~~~-- 76 (202)
|+++++++|++||.||++.+.|+|+|++|||.+ ....+.+...+..|++.|| +.....+. +|++.++. .++..
T Consensus 161 ~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~-~~~~~~w~~~~~~A~~~v~~~i~~~~~~~~I~~~g~~--~~~~~~~ 237 (407)
T COG2730 161 NVEATIDIWKFIANRFKNYDTVIGFELINEPNG-IVTSETWNGGDDEAYDVVRNAILSNAPHWLIRVGGQG--LNGWRVI 237 (407)
T ss_pred hHHHHHHHHHHHHHhccCCCceeeeeeecCCcc-cCCccccccchHHHHHHHHhhhhhcCceEEEEECccc--ccCCeee
Confidence 578999999999999999999999999999995 1122333333468999996 45566655 67777653 11100
Q ss_pred CCCCC---CCCCcCC---CCCCCCceeeeecceeeec---------CCCc---cchHHHHHHhhHHHhhhhcCCCCCceE
Q 043245 77 PMDPR---DPRELFP---LTSDLNGSVIDVHYYNSNK---------SMTV---QQNIDFVCTNRSAQLNQITTPDGPLIF 138 (202)
Q Consensus 77 ~~~~~---~~~~~~~---~~~~~~nvv~d~H~Y~~~~---------~~~~---~~~i~~~~~~~~~~l~~~~~~~~~p~~ 138 (202)
....+ +-..... ....++++....|.|.++. ..+. .......|......+...+...+.|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (407)
T COG2730 238 MAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNGGSWTVGGEFDLAETDCAIWLNYVGHGARKNGYPTV 317 (407)
T ss_pred ccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcCCCCCccCCcccccccceeeecceeecccccceeee
Confidence 00001 0000000 0011223445555555541 1110 111112222111223223345788999
Q ss_pred EeeeeccCC-C----CccCHHHHHHHHHHHHHHHhhCCccEEEEecccCCCCCCCCChHHHHhCCCc
Q 043245 139 VGEWVAELP-V----PEASKEDLQRFAKAQQEVYGNATFGWGYWTLKTLNNERKHWSLEWMIENGYI 200 (202)
Q Consensus 139 vGEws~~~~-~----~~~~~~~~~~~~~~Q~~~~~~~~~Gw~fWt~K~e~~~~~~Ws~~~~~~~G~i 200 (202)
+||||...+ . ..+..+..+.+.+.|.+++.. ..+|+.|+++.+.. ..|+.++....+.+
T Consensus 318 ~Ge~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~--~~~~~~~~~~~~~~ 381 (407)
T COG2730 318 IGEFGGNYNANNPNPQDERKDNVKVYLENQLDVFDT-TTYWINNPWSGGND--TGYDIEDDINLGLF 381 (407)
T ss_pred eccccCccccCCCCccchhhHHHHHHhhhhhhhccc-eeEEEeecccCCCC--Cccchhhcchhhcc
Confidence 999999873 2 135677889999999999997 78999999999863 77888776666544
No 3
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.60 E-value=2.4e-06 Score=78.59 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCCCCCCC
Q 043245 5 SFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDPR 84 (202)
Q Consensus 5 t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~~~~~~ 84 (202)
..+.++.|.+|++++|+|+...+.|||.. +......+++++++.+|+.||++||........ ..+..
T Consensus 392 ~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~---~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~----------~~~~~ 458 (604)
T PRK10150 392 HLQAIRELIARDKNHPSVVMWSIANEPAS---REQGAREYFAPLAELTRKLDPTRPVTCVNVMFA----------TPDTD 458 (604)
T ss_pred HHHHHHHHHHhccCCceEEEEeeccCCCc---cchhHHHHHHHHHHHHHhhCCCCceEEEecccC----------Ccccc
Confidence 46678999999999999999999999864 335677899999999999999999887643211 00111
Q ss_pred CcCCCCCCCCceeeeecceeee-cCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCC------Cc-cCHHHH
Q 043245 85 ELFPLTSDLNGSVIDVHYYNSN-KSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPV------PE-ASKEDL 156 (202)
Q Consensus 85 ~~~~~~~~~~nvv~d~H~Y~~~-~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~------~~-~~~~~~ 156 (202)
.+... -=|+..|.|..+ ........+..... ..+.++.+..+.|+++.|||+.... ++ -+.+..
T Consensus 459 ~~~~~-----~Dv~~~N~Y~~wy~~~~~~~~~~~~~~---~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q 530 (604)
T PRK10150 459 TVSDL-----VDVLCLNRYYGWYVDSGDLETAEKVLE---KELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEYQ 530 (604)
T ss_pred cccCc-----ccEEEEcccceecCCCCCHHHHHHHHH---HHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHHH
Confidence 11111 126777777765 21111111111111 1122222233689999999964310 01 123333
Q ss_pred HHHHHHHHHHHhh--CCccEEEEeccc
Q 043245 157 QRFAKAQQEVYGN--ATFGWGYWTLKT 181 (202)
Q Consensus 157 ~~~~~~Q~~~~~~--~~~Gw~fWt~K~ 181 (202)
..+++.+..++++ .-+|-+.|+|..
T Consensus 531 ~~~~~~~~~~~~~~p~~~G~~iW~~~D 557 (604)
T PRK10150 531 CAFLDMYHRVFDRVPAVVGEQVWNFAD 557 (604)
T ss_pred HHHHHHHHHHHhcCCceEEEEEEeeec
Confidence 4566666666653 567888888653
No 4
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.26 E-value=6.3e-05 Score=61.89 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC---hHHH-----HHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Q 043245 3 MKSFQILTTCNFRYASCPSLYAVELINEPLSPGVS---LERL-----NKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSG 74 (202)
Q Consensus 3 ~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~---~~~l-----~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~ 74 (202)
+...+.++.+++||++. |..++++|||...+-. ...+ .+|+..+++++|+++|+..+++.| +..
T Consensus 57 ~~~~~~i~~v~~ry~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd-y~~----- 128 (254)
T smart00633 57 ARLENHIKTVVGRYKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND-YNT----- 128 (254)
T ss_pred HHHHHHHHHHHHHhCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec-cCC-----
Confidence 34567888999999866 6779999999853200 0011 278899999999999999999987 432
Q ss_pred CCCCCC-CCCCCcCCCC-------CCCCceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccC
Q 043245 75 LGPMDP-RDPRELFPLT-------SDLNGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAEL 146 (202)
Q Consensus 75 ~~~~~~-~~~~~~~~~~-------~~~~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~ 146 (202)
... .....+.... .+..-|-+-.|.+... .+. ..+.+ .|.+++ +.|.||+|.|+.+..
T Consensus 129 ---~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~--~~~----~~~~~----~l~~~~-~~g~pi~iTE~dv~~ 194 (254)
T smart00633 129 ---EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGS--PNI----AEIRA----ALDRFA-SLGLEIQITELDISG 194 (254)
T ss_pred ---cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCC--CCH----HHHHH----HHHHHH-HcCCceEEEEeecCC
Confidence 000 0000111100 1234566666765321 122 22221 133333 348999999999875
Q ss_pred CCCccCHHHHHHHHHHHHHHHhh--CCccEEEEeccc
Q 043245 147 PVPEASKEDLQRFAKAQQEVYGN--ATFGWGYWTLKT 181 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K~ 181 (202)
.. ..+...++++..+.++-+ ...|-++|.+..
T Consensus 195 ~~---~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d 228 (254)
T smart00633 195 YP---NPQAQAADYEEVFKACLAHPAVTGVTVWGVTD 228 (254)
T ss_pred CC---cHHHHHHHHHHHHHHHHcCCCeeEEEEeCCcc
Confidence 42 213345666666666654 347899998863
No 5
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.01 E-value=1.4e-05 Score=55.18 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=38.7
Q ss_pred HHHHhCCCCceeEEEeecC-CCCC---------CCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 043245 12 CNFRYASCPSLYAVELINE-PLSP---------GVSLERLNKYYKAGYDAVRNHSPTAYVVMS 64 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNE-P~~~---------~~~~~~l~~~y~~a~~~IR~~~~~~~iii~ 64 (202)
|.++|++++.|.+-||.|| |... ......+.++.+++.+.||+++|++||..+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 4688999999999999999 6621 113477889999999999999999998664
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.78 E-value=0.00042 Score=58.16 Aligned_cols=56 Identities=29% Similarity=0.272 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 3 MKSFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 3 ~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
+...+-++.+.+|++++|+|+...+-||+ ....+++++++.+|+.||++||....+
T Consensus 104 ~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 104 ENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp HHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred HHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeeccc
Confidence 45678899999999999999999999998 466778889999999999999977654
No 7
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.46 E-value=0.0013 Score=56.18 Aligned_cols=152 Identities=22% Similarity=0.243 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEeecCCCC-------CCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCC
Q 043245 3 MKSFQILTTCNFRYASCPSLYAVELINEPLS-------PGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGL 75 (202)
Q Consensus 3 ~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~-------~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~ 75 (202)
+.|.++++.|.+ .+- .+-.++|=||=.. ...+...+..+...++++||+++|+..||+|=.-.
T Consensus 110 ~yT~~vl~~l~~--~G~-~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~------- 179 (332)
T PF07745_consen 110 DYTKDVLQALKA--AGV-TPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANG------- 179 (332)
T ss_dssp HHHHHHHHHHHH--TT---ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-T-------
T ss_pred HHHHHHHHHHHH--CCC-CccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCC-------
Confidence 356677777733 222 2456899999442 22356788899999999999999999999984321
Q ss_pred CCCCCCCC---CCcCCCC--CCCCceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCC--
Q 043245 76 GPMDPRDP---RELFPLT--SDLNGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPV-- 148 (202)
Q Consensus 76 ~~~~~~~~---~~~~~~~--~~~~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~-- 148 (202)
++. ..|++.. .+.+-=|+-.++|..|+. .+..+.+. +..++++++.||+|-|.|...+.
T Consensus 180 -----~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~-----~l~~l~~~----l~~l~~ry~K~V~V~Et~yp~t~~d 245 (332)
T PF07745_consen 180 -----GDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG-----TLEDLKNN----LNDLASRYGKPVMVVETGYPWTLDD 245 (332)
T ss_dssp -----TSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST------HHHHHHH----HHHHHHHHT-EEEEEEE---SBS--
T ss_pred -----CchHHHHHHHHHHHhcCCCcceEEEecCCCCcc-----hHHHHHHH----HHHHHHHhCCeeEEEeccccccccc
Confidence 111 1111110 112223666778876644 22222221 22234456789999999976531
Q ss_pred --------C--------ccCHHHHHHHHHHHHHHHhh----CCccEEEEe
Q 043245 149 --------P--------EASKEDLQRFAKAQQEVYGN----ATFGWGYWT 178 (202)
Q Consensus 149 --------~--------~~~~~~~~~~~~~Q~~~~~~----~~~Gw~fWt 178 (202)
+ ..+.+..++|+++.+++-.. .|.|-+||-
T Consensus 246 ~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWe 295 (332)
T PF07745_consen 246 GDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWE 295 (332)
T ss_dssp SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-
T ss_pred cccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeec
Confidence 0 01344566777777665443 688999993
No 8
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00051 Score=60.53 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhCCCCceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCCCCCCC
Q 043245 6 FQILTTCNFRYASCPSLYAVELINEPLSP-GVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDPR 84 (202)
Q Consensus 6 ~~~~~~ia~~y~~~~~v~g~ellNEP~~~-~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~~~~~~ 84 (202)
.+..+.+.+.|+.+|++.|-++-|||.-. ....+.+.++-...+..|..++|+++|-++|.-.+ | .
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp-----------~--~ 189 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP-----------W--P 189 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc-----------c--c
Confidence 56788899999999999999999998642 34457888899999999999999999999886432 1 1
Q ss_pred CcCCCCCCCCce--eeeecceeee-cCCCccchHHHHHHhhHHHhhhhcCCCC-CceEEeeeeccCCCCccCHHHHHHHH
Q 043245 85 ELFPLTSDLNGS--VIDVHYYNSN-KSMTVQQNIDFVCTNRSAQLNQITTPDG-PLIFVGEWVAELPVPEASKEDLQRFA 160 (202)
Q Consensus 85 ~~~~~~~~~~nv--v~d~H~Y~~~-~~~~~~~~i~~~~~~~~~~l~~~~~~~~-~p~~vGEws~~~~~~~~~~~~~~~~~ 160 (202)
.+.+. +-.+. -=..|.|.-+ .+.-.+..+.+.. +.+ +..+.-+ .||+.=|||...+...+....++-|.
T Consensus 190 ~~~py--N~r~~vDya~~hLY~hyd~sl~~r~s~~yg~----~~l-~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~ 262 (587)
T COG3934 190 QYAPY--NARFYVDYAANHLYRHYDTSLVSRVSTVYGK----PYL-DIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWI 262 (587)
T ss_pred ccCCc--ccceeeccccchhhhhccCChhheeeeeecc----hhh-ccchhcccceeeccccCCcccccccccchhhhhh
Confidence 11111 11111 1245777644 2220111111111 111 1123334 89999999998775444444455555
Q ss_pred HHHHHHHhhCCccEEEEeccc
Q 043245 161 KAQQEVYGNATFGWGYWTLKT 181 (202)
Q Consensus 161 ~~Q~~~~~~~~~Gw~fWt~K~ 181 (202)
.. ++...+.|=.+|++..
T Consensus 263 ~l---al~~ggdGaLiwclsd 280 (587)
T COG3934 263 RL---ALDTGGDGALIWCLSD 280 (587)
T ss_pred hh---HHhhcCCceEEEEecC
Confidence 43 5555677889999975
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.24 E-value=0.012 Score=48.10 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCCCCceeEEEeecCCCCC---CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCCCCCC
Q 043245 7 QILTTCNFRYASCPSLYAVELINEPLSP---GVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDP 83 (202)
Q Consensus 7 ~~~~~ia~~y~~~~~v~g~ellNEP~~~---~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~~~~~ 83 (202)
+.++.+.+. .+.+--+...|||... .++.+..-+.+.+.++.+|. +.+.| ++++... .. +. ..+...|
T Consensus 54 ~~~~~v~~~---~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l-~sPa~~~-~~-~~-~~~g~~W 124 (239)
T PF11790_consen 54 DWLANVQNA---HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKL-GSPAVAF-TN-GG-TPGGLDW 124 (239)
T ss_pred HHHHHHHhh---ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEE-ECCeecc-cC-CC-CCCccHH
Confidence 344555554 3445567888999864 35667777778888888884 44544 5665521 00 00 0000111
Q ss_pred -CCcCCCCC-CCCceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCCCccCHHHHHHHHH
Q 043245 84 -RELFPLTS-DLNGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPVPEASKEDLQRFAK 161 (202)
Q Consensus 84 -~~~~~~~~-~~~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~~~~~~~~~~~~~~ 161 (202)
..|+.... +..-=++.+|.|. .+.+.....+.. +-++++.||+|.||++....+..+.+....|++
T Consensus 125 l~~F~~~~~~~~~~D~iavH~Y~----~~~~~~~~~i~~--------~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~ 192 (239)
T PF11790_consen 125 LSQFLSACARGCRVDFIAVHWYG----GDADDFKDYIDD--------LHNRYGKPIWITEFGCWNGGSQGSDEQQASFLR 192 (239)
T ss_pred HHHHHHhcccCCCccEEEEecCC----cCHHHHHHHHHH--------HHHHhCCCEEEEeecccCCCCCCCHHHHHHHHH
Confidence 23433222 2334478889992 222322233322 122456899999999865333445667788888
Q ss_pred HHHHHHhh
Q 043245 162 AQQEVYGN 169 (202)
Q Consensus 162 ~Q~~~~~~ 169 (202)
..+...++
T Consensus 193 ~~~~~ld~ 200 (239)
T PF11790_consen 193 QALPWLDS 200 (239)
T ss_pred HHHHHHhc
Confidence 87777764
No 10
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.95 E-value=0.0061 Score=51.93 Aligned_cols=155 Identities=15% Similarity=0.212 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC-----ChHHHH-----HHHHHHHHHHHhcCCCcEEEEcCCCCCCCCC
Q 043245 4 KSFQILTTCNFRYASCPSLYAVELINEPLSPGV-----SLERLN-----KYYKAGYDAVRNHSPTAYVVMSSRIEPIDPS 73 (202)
Q Consensus 4 ~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~-----~~~~l~-----~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~ 73 (202)
+..+-++.+++||++...|...+|+|||....- ....+. +|...+++..|+.+|+..+++-| +..
T Consensus 107 ~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L~~ND-y~~---- 181 (320)
T PF00331_consen 107 RLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAKLFYND-YNI---- 181 (320)
T ss_dssp HHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEEEEEE-SST----
T ss_pred HHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcEEEecc-ccc----
Confidence 456788999999998777899999999986321 011222 58889999999999999999976 432
Q ss_pred CCCCCCCCCC---CCcCCCC-------CCCCceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeee
Q 043245 74 GLGPMDPRDP---RELFPLT-------SDLNGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWV 143 (202)
Q Consensus 74 ~~~~~~~~~~---~~~~~~~-------~~~~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws 143 (202)
..+ +.+.... .+-.-|-+-.|+-... + +..+.+. |++++ ..|+|+.|.|+.
T Consensus 182 -------~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~---~----~~~i~~~----l~~~~-~~Gl~i~ITElD 242 (320)
T PF00331_consen 182 -------ESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGY---P----PEQIWNA----LDRFA-SLGLPIHITELD 242 (320)
T ss_dssp -------TSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTS---S----HHHHHHH----HHHHH-TTTSEEEEEEEE
T ss_pred -------cchHHHHHHHHHHHHHHhCCCccceechhhccCCCC---C----HHHHHHH----HHHHH-HcCCceEEEeee
Confidence 111 1111110 1235567777754332 1 2333321 33333 457999999999
Q ss_pred ccCCCCc---cCHHHHHHHHHHHHHHHhhC----CccEEEEecccC
Q 043245 144 AELPVPE---ASKEDLQRFAKAQQEVYGNA----TFGWGYWTLKTL 182 (202)
Q Consensus 144 ~~~~~~~---~~~~~~~~~~~~Q~~~~~~~----~~Gw~fWt~K~e 182 (202)
+...... +..+...+++++-+.++-+. ..|-++|.+-..
T Consensus 243 v~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~ 288 (320)
T PF00331_consen 243 VRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDG 288 (320)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTT
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCC
Confidence 8764321 11223344555555555432 468899998643
No 11
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.17 Score=42.92 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCC---hHHH------HHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCC
Q 043245 4 KSFQILTTCNFRYASCPSLYAVELINEPLSPGVS---LERL------NKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSG 74 (202)
Q Consensus 4 ~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~---~~~l------~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~ 74 (202)
+..+-+..+.+||++. |+.-+++|||... .+ ...+ .++.+.|+..-|+.+|+..+++-|--..
T Consensus 126 ~~e~hI~tV~~rYkg~--~~sWDVVNE~vdd-~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie----- 197 (345)
T COG3693 126 MVEEHIKTVVGRYKGS--VASWDVVNEAVDD-QGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIE----- 197 (345)
T ss_pred HHHHHHHHHHHhccCc--eeEEEecccccCC-CchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeeccccc-----
Confidence 4456677889999976 7889999999862 11 1111 2577889999999999998888773111
Q ss_pred CCCCCCCCCCCcCCCC-------CCCCceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccC
Q 043245 75 LGPMDPRDPRELFPLT-------SDLNGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAEL 146 (202)
Q Consensus 75 ~~~~~~~~~~~~~~~~-------~~~~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~ 146 (202)
-+.+.-+.+.... .+-..+-+-.|+= ...+..+.... . +.++++. |+|++|.|.=+..
T Consensus 198 ---~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~---~~~~~~~~~~~------a-~~~~~k~-Gl~i~VTELD~~~ 262 (345)
T COG3693 198 ---GNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFS---GDGPSIEKMRA------A-LLKFSKL-GLPIYVTELDMSD 262 (345)
T ss_pred ---CChHHHHHHHHHHHHHHHCCCCccceeeeeeec---CCCCCHHHHHH------H-HHHHhhc-CCCceEEEeeeec
Confidence 0001111222110 2245677888811 12222221111 1 2333444 8999999998876
No 12
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.31 Score=41.08 Aligned_cols=140 Identities=24% Similarity=0.270 Sum_probs=78.6
Q ss_pred eEEEeecCCCCC-------CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCc
Q 043245 23 YAVELINEPLSP-------GVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDPRELFPLTSDLNG 95 (202)
Q Consensus 23 ~g~ellNEP~~~-------~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 95 (202)
-..++=||-.+. .-+.+.+-....+++++||+++|+..|++|=+-.. .. ++. .|-.+.+.. .+-+-
T Consensus 173 dmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~-~n-~~y---~~~fd~ltk--~nvdf 245 (403)
T COG3867 173 DMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGE-NN-SLY---RWIFDELTK--RNVDF 245 (403)
T ss_pred cceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCC-CC-chh---hHHHHHHHH--cCCCc
Confidence 347888998752 12567888999999999999999999999843211 00 000 011111111 11122
Q ss_pred eeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCC----------C--c---c-------CH
Q 043245 96 SVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPV----------P--E---A-------SK 153 (202)
Q Consensus 96 vv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~----------~--~---~-------~~ 153 (202)
=|+...+|..|+. .|+.+... |.+.+++++.-|+|-|-+-+.+. + + . .-
T Consensus 246 DVig~SyYpyWhg-----tl~nL~~n----l~dia~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQa 316 (403)
T COG3867 246 DVIGSSYYPYWHG-----TLNNLTTN----LNDIASRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQA 316 (403)
T ss_pred eEEeeeccccccC-----cHHHHHhH----HHHHHHHhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechh
Confidence 3445556655532 12222221 33335567778999998876431 0 0 0 12
Q ss_pred HHHHHHHHHHHHHHhhCCccEEEEe
Q 043245 154 EDLQRFAKAQQEVYGNATFGWGYWT 178 (202)
Q Consensus 154 ~~~~~~~~~Q~~~~~~~~~Gw~fWt 178 (202)
.++|..+++...+=...|.|=|||-
T Consensus 317 t~vrDvie~V~nvp~~~GlGvFYWE 341 (403)
T COG3867 317 TFVRDVIEAVKNVPKSNGLGVFYWE 341 (403)
T ss_pred hHHHHHHHHHHhCCCCCceEEEEec
Confidence 3455556655555555688999995
No 13
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.79 E-value=0.17 Score=38.97 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 043245 2 LMKSFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRI 67 (202)
Q Consensus 2 ~~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~ 67 (202)
+++...+...|.++|+.++++.|.=|-.|+... ...-.++++...+.++++.++.||+|++-+
T Consensus 101 ~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~---~~~~~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 101 AERNKQVADELWQRYGHHPSFYGWYIPYEIDDY---NWNAPERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecccCCc---ccchHHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 356677999999999999999999999999752 233467778888888899999999998743
No 14
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.24 E-value=0.14 Score=43.03 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCCCC
Q 043245 2 LMKSFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPR 81 (202)
Q Consensus 2 ~~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~~~ 81 (202)
.+.....++.|++||+..|+|+ .-|-||= .....-.++++++.+.||+.+|..++-||+.-.. .
T Consensus 128 ~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~----~~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~-----------~ 191 (289)
T PF13204_consen 128 PENAERYGRYVVARYGAYPNVI-WILGGDY----FDTEKTRADWDAMARGIKENDPYQLITIHPCGRT-----------S 191 (289)
T ss_dssp HHHHHHHHHHHHHHHTT-SSEE-EEEESSS------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTE-----------B
T ss_pred HHHHHHHHHHHHHHHhcCCCCE-EEecCcc----CCCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCC-----------C
Confidence 4667889999999999999877 6699986 1234567888899999999999889999985321 1
Q ss_pred CCCCcCCCCCCCCceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeec
Q 043245 82 DPRELFPLTSDLNGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVA 144 (202)
Q Consensus 82 ~~~~~~~~~~~~~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~ 144 (202)
.+..|. +.-.+|++.++.-+..........+-. . .++......||+.||=+=
T Consensus 192 ~~~~~~------~~~Wldf~~~Qsgh~~~~~~~~~~~~~-~----~~~~~~p~KPvin~Ep~Y 243 (289)
T PF13204_consen 192 SPDWFH------DEPWLDFNMYQSGHNRYDQDNWYYLPE-E----FDYRRKPVKPVINGEPCY 243 (289)
T ss_dssp THHHHT------T-TT--SEEEB--S--TT--THHHH---H----HHHTSSS---EEESS---
T ss_pred cchhhc------CCCcceEEEeecCCCcccchHHHHHhh-h----hhhhhCCCCCEEcCcccc
Confidence 111111 123567777766422211122222200 0 112445678999999854
No 15
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=94.01 E-value=0.8 Score=39.93 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhCCCC-ceeEEEeecCCCCC---------CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 2 LMKSFQILTTCNFRYASCP-SLYAVELINEPLSP---------GVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 2 ~~~t~~~~~~ia~~y~~~~-~v~g~ellNEP~~~---------~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
.+..-+.|..++++|+... .|--|+.+|||... ..+.....++.+...+++++.+.+..|++.++
T Consensus 153 y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 153 YDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 3455678899999995543 57889999999852 13566778888999999999888777777665
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=93.94 E-value=0.16 Score=44.12 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 043245 3 MKSFQILTTCNFRYASCPSLYAVELINEPLS 33 (202)
Q Consensus 3 ~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~ 33 (202)
+.+.++++.|++||+++|+|+|++|-|||..
T Consensus 110 ~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 110 EYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp HHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred HHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 4677899999999999999999999999965
No 17
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.90 E-value=0.76 Score=45.26 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 4 KSFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 4 ~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
..++-++.|.+|.++||+|+...+-||+.. +.. ..++++.+|+.||.+||....
T Consensus 436 ~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~-g~~-------~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 436 AMSERVTRMVQRDRNHPSIIIWSLGNESGH-GAN-------HDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCccCCCc-Chh-------HHHHHHHHHhhCCCCcEEECC
Confidence 346678899999999999999999999853 211 356788999999999987754
No 18
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=91.19 E-value=0.36 Score=43.51 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCC-ceeEEEeecCCCCCCC----ChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCCCCC
Q 043245 8 ILTTCNFRYASCP-SLYAVELINEPLSPGV----SLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRD 82 (202)
Q Consensus 8 ~~~~ia~~y~~~~-~v~g~ellNEP~~~~~----~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~~~~ 82 (202)
+++-+.+||.... .-.-+|+-|||..... +.....++|+.++++||+++|+..| -++++..+ ...|-
T Consensus 141 ~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~v-GGp~~~~~-------~~~~~ 212 (486)
T PF01229_consen 141 FARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKV-GGPAFAWA-------YDEWC 212 (486)
T ss_dssp HHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEE-EEEEEETT--------THHH
T ss_pred HHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcc-cCcccccc-------HHHHH
Confidence 3344445554221 2256999999976321 2456788999999999999999875 45533110 00110
Q ss_pred CCCcCCCC--CCCCceeeeecceeee----cCCCccchH---HHHHHhhH---HHhhhhcCCCCCceEEeeeeccCCCCc
Q 043245 83 PRELFPLT--SDLNGSVIDVHYYNSN----KSMTVQQNI---DFVCTNRS---AQLNQITTPDGPLIFVGEWVAELPVPE 150 (202)
Q Consensus 83 ~~~~~~~~--~~~~nvv~d~H~Y~~~----~~~~~~~~i---~~~~~~~~---~~l~~~~~~~~~p~~vGEws~~~~~~~ 150 (202)
..|..+. ...+-=.+++|.|..- ......+.+ ..+...-. ..+.+ .....+|+.+.||+.......
T Consensus 213 -~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~~~~tE~n~~~~~~~ 290 (486)
T PF01229_consen 213 -EDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIIND-EADPNLPLYITEWNASISPRN 290 (486)
T ss_dssp -HHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHT-SSSTT--EEEEEEES-SSTT-
T ss_pred -HHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhh-ccCCCCceeecccccccCCCc
Confidence 1221111 1112225788999754 111111111 12111111 11111 112357899999998764211
Q ss_pred c--CHHHHHHHHH-HHHHHHhhCCccEEEEecc
Q 043245 151 A--SKEDLQRFAK-AQQEVYGNATFGWGYWTLK 180 (202)
Q Consensus 151 ~--~~~~~~~~~~-~Q~~~~~~~~~Gw~fWt~K 180 (202)
. +......|+- ..++.....-.+..||++-
T Consensus 291 ~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~s 323 (486)
T PF01229_consen 291 PQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFS 323 (486)
T ss_dssp GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SB
T ss_pred chhccccchhhHHHHHHHhhhhhhhhhhccchh
Confidence 1 1112223332 2566665433468899985
No 19
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.56 E-value=1.2 Score=40.07 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 043245 5 SFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVM 63 (202)
Q Consensus 5 t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii 63 (202)
.-.+++.+.++|.+..++.+-+..||-.++..+.+-++.--.+.|++++++|++..-++
T Consensus 222 gs~Flr~~~kefG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWll 280 (666)
T KOG2233|consen 222 GSTFLRHQIKEFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLL 280 (666)
T ss_pred HHHHHHHHHHHhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEee
Confidence 34688999999999899999999999776555678888888899999999999876434
No 20
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=86.80 E-value=2 Score=42.36 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 043245 5 SFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMS 64 (202)
Q Consensus 5 t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~ 64 (202)
.++-++.|.+|.+++|+|+...+-||... + . . ..++++.+|+.||.+||...
T Consensus 424 ~~~~~~~mV~RdrNHPSIi~WslGNE~~~-g--~----~-~~~~~~~~k~~DptR~v~~~ 475 (1021)
T PRK10340 424 YVDRIVRHIHAQKNHPSIIIWSLGNESGY-G--C----N-IRAMYHAAKALDDTRLVHYE 475 (1021)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECccCccc-c--H----H-HHHHHHHHHHhCCCceEEeC
Confidence 35668899999999999999999999853 2 1 1 26788999999999998654
No 21
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=84.37 E-value=6.5 Score=35.68 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCCC-ceeEEEeecCCCC--------C--CCChHHHHHHHHH-HHHHHHhcCC--CcEEEEcC-CCCCCCC
Q 043245 8 ILTTCNFRYASCP-SLYAVELINEPLS--------P--GVSLERLNKYYKA-GYDAVRNHSP--TAYVVMSS-RIEPIDP 72 (202)
Q Consensus 8 ~~~~ia~~y~~~~-~v~g~ellNEP~~--------~--~~~~~~l~~~y~~-a~~~IR~~~~--~~~iii~d-~~~~~~~ 72 (202)
-+.+..+.|+.+. .|.||-+-|||.. + ..+.+...+|... .-.++|+.++ ++-|++.| ....
T Consensus 209 Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~--- 285 (496)
T PF02055_consen 209 YFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN--- 285 (496)
T ss_dssp HHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---
Confidence 3444555676653 5899999999973 1 2356788999986 7778999876 66666644 2211
Q ss_pred CCCCCCCCCCCCCcCCCCC-CCCceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCCCc-
Q 043245 73 SGLGPMDPRDPRELFPLTS-DLNGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPVPE- 150 (202)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-~~~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~~~- 150 (202)
+. ..+...+.... ..---.+..|.|... ...+.+..+.+ + -....++..|-++.....+
T Consensus 286 -----~~-~~~~~il~d~~A~~yv~GiA~HwY~g~---~~~~~l~~~h~-------~---~P~k~l~~TE~~~g~~~~~~ 346 (496)
T PF02055_consen 286 -----LP-DYADTILNDPEAAKYVDGIAFHWYGGD---PSPQALDQVHN-------K---FPDKFLLFTEACCGSWNWDT 346 (496)
T ss_dssp -----TT-HHHHHHHTSHHHHTTEEEEEEEETTCS----HCHHHHHHHH-------H---STTSEEEEEEEESS-STTS-
T ss_pred -----cc-hhhhhhhcChhhHhheeEEEEECCCCC---chhhHHHHHHH-------H---CCCcEEEeeccccCCCCccc
Confidence 00 00111211100 011246788999651 11122222211 0 1234689999887542211
Q ss_pred -c---CHHHHHHHHHHHHHHHhhCCccEEEEecccCCCCCCCCC
Q 043245 151 -A---SKEDLQRFAKAQQEVYGNATFGWGYWTLKTLNNERKHWS 190 (202)
Q Consensus 151 -~---~~~~~~~~~~~Q~~~~~~~~~Gw~fWt~K~e~~~~~~Ws 190 (202)
. .-+...+|....+..+.....||+.|+.-.+..+++.|.
T Consensus 347 ~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 347 SVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT
T ss_pred ccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCccc
Confidence 0 112224566666666766778999999765433335554
No 22
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=82.72 E-value=0.13 Score=43.76 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=38.9
Q ss_pred ceeEEEeecCCCCC----CCChHHHHHHHHH---HHHHHHhcCCCcEEEEcCC-CCCCCCCCCCCCCCCCC-CCcCCCCC
Q 043245 21 SLYAVELINEPLSP----GVSLERLNKYYKA---GYDAVRNHSPTAYVVMSSR-IEPIDPSGLGPMDPRDP-RELFPLTS 91 (202)
Q Consensus 21 ~v~g~ellNEP~~~----~~~~~~l~~~y~~---a~~~IR~~~~~~~iii~d~-~~~~~~~~~~~~~~~~~-~~~~~~~~ 91 (202)
.|.+.||-|||.+. .++...+-+=+.+ +++.|.......|.|++++ +.. .+| ..|+.-..
T Consensus 165 ~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d-----------~~w~~~FL~~~g 233 (319)
T PF03662_consen 165 NIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFD-----------ADWLKEFLKASG 233 (319)
T ss_dssp GG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS------------GGGHHHHHHHTT
T ss_pred CccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCC-----------HHHHHHHHHhcC
Confidence 46789999999863 2344433333322 3333322223345566654 311 011 33433211
Q ss_pred CCCceeeeecceeee--cC-CCcc-----chHHHHHHhhHHHhhhhcCC--CCCceEEeeeeccCCC
Q 043245 92 DLNGSVIDVHYYNSN--KS-MTVQ-----QNIDFVCTNRSAQLNQITTP--DGPLIFVGEWVAELPV 148 (202)
Q Consensus 92 ~~~nvv~d~H~Y~~~--~~-~~~~-----~~i~~~~~~~~~~l~~~~~~--~~~p~~vGEws~~~~~ 148 (202)
...==+++.|+|..- .+ ...+ ..++.+....+. +++..++ .+.|++|||=|.+.+.
T Consensus 234 ~~~vD~vT~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~-~~~~v~~~~p~~~~WlGEtg~Ay~g 299 (319)
T PF03662_consen 234 PGVVDAVTWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQK-LQQVVQEYGPGKPVWLGETGSAYNG 299 (319)
T ss_dssp TT--SEEEEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHH-HH-----HHH---EEEEEEEEESTT
T ss_pred CCccCEEEEEecCCCCCchHHHHHHhcChhhhhHHHHHHHH-HhhhhcccCCCCCeEEeCcccccCC
Confidence 111236788999642 11 1111 122222221111 2222222 3468999999999864
No 23
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=78.65 E-value=47 Score=29.39 Aligned_cols=158 Identities=18% Similarity=0.266 Sum_probs=81.4
Q ss_pred HHHHHHhCCCC-ceeEEEeecCCCCC----------CCChHHHHHHHHHHH-HHHHhc--CCCcEEEEcCCCCCCCCCCC
Q 043245 10 TTCNFRYASCP-SLYAVELINEPLSP----------GVSLERLNKYYKAGY-DAVRNH--SPTAYVVMSSRIEPIDPSGL 75 (202)
Q Consensus 10 ~~ia~~y~~~~-~v~g~ellNEP~~~----------~~~~~~l~~~y~~a~-~~IR~~--~~~~~iii~d~~~~~~~~~~ 75 (202)
-...+.|+.+. ...|+-.-|||... +.+++..++|.++-+ .++.+. ..++-|+|-|- .||+
T Consensus 236 vkFleaY~~~gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD-----~Rg~ 310 (518)
T KOG2566|consen 236 VKFLEAYAKHGIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDD-----QRGL 310 (518)
T ss_pred HHHHHHHHhcCceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecC-----CccC
Confidence 34456676553 68999999999862 346788889987643 334332 35666777652 3444
Q ss_pred CCCCCCCCCCcCCCCCCCCc--eeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCC-CCceEEeeeeccCCCC-cc
Q 043245 76 GPMDPRDPRELFPLTSDLNG--SVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPD-GPLIFVGEWVAELPVP-EA 151 (202)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~n--vv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~-~~p~~vGEws~~~~~~-~~ 151 (202)
.| .| ++..+..+ .... --+.+|.|.-|. .++.++....+ ++ ..-+|-.|=+...... +.
T Consensus 311 LP--~W-adtvlnDp-eAakYv~GIaVHwY~df~--~pa~~L~eTh~-----------~hP~~fifgTEAc~Gy~~~d~v 373 (518)
T KOG2566|consen 311 LP--HW-ADTVLNDP-EAAKYVHGIAVHWYQDFL--EPAKHLDETHR-----------KHPNTFIFGTEACAGYKSKDGV 373 (518)
T ss_pred CC--cc-chhhccCh-hhhhhccceEEEeecccc--ChhhhhhhHHh-----------hCCCeEEEeehhccccccccCc
Confidence 43 34 23333321 1111 136789999872 12223222110 00 0113333333322100 00
Q ss_pred ---CHHHHHHHHHHHHHHHhhCCccEEEEecccCCCCCCCC
Q 043245 152 ---SKEDLQRFAKAQQEVYGNATFGWGYWTLKTLNNERKHW 189 (202)
Q Consensus 152 ---~~~~~~~~~~~Q~~~~~~~~~Gw~fWt~K~e~~~~~~W 189 (202)
+=+.-.+|..+-++-+..+--||+=|++--+..+++.|
T Consensus 374 ~~Gswdrae~yasdii~dlnn~vtGWtdwNl~Ld~~GGP~w 414 (518)
T KOG2566|consen 374 DLGSWDRAEQYASDIITDLNNHVTGWTDWNLILDAQGGPNW 414 (518)
T ss_pred cccchhhHHHHHHHHHHhhhhhccceeeeeeEecCcCCchh
Confidence 00112356666666666666799999997665445766
No 24
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=73.26 E-value=12 Score=30.62 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCC---CceeEEEeecCCCC----------CCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 6 FQILTTCNFRYASC---PSLYAVELINEPLS----------PGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 6 ~~~~~~ia~~y~~~---~~v~g~ellNEP~~----------~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
-+.+..|..+|... ..|-++.|=|||.. ..++.+.|.+=+-+.-++||+++|+..| +++.
T Consensus 107 ~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v-~GP~ 179 (239)
T PF12891_consen 107 DEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKV-FGPV 179 (239)
T ss_dssp HHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEE-EEEE
T ss_pred HHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeE-eech
Confidence 45678888888654 47899999999974 1334555666666777889999999886 6554
No 25
>TIGR03356 BGL beta-galactosidase.
Probab=72.31 E-value=21 Score=31.76 Aligned_cols=30 Identities=13% Similarity=-0.066 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhCCCCceeEEEeecCCCC
Q 043245 2 LMKSFQILTTCNFRYASCPSLYAVELINEPLS 33 (202)
Q Consensus 2 ~~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~ 33 (202)
++...+.++.++++|++.. --.+.+|||..
T Consensus 135 ~~~f~~ya~~~~~~~~d~v--~~w~t~NEp~~ 164 (427)
T TIGR03356 135 AEWFAEYAAVVAERLGDRV--KHWITLNEPWC 164 (427)
T ss_pred HHHHHHHHHHHHHHhCCcC--CEEEEecCcce
Confidence 4677899999999999853 33589999973
No 26
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=71.41 E-value=35 Score=29.46 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEE
Q 043245 39 ERLNKYYKAGYDAVRNHSPTAYVV 62 (202)
Q Consensus 39 ~~l~~~y~~a~~~IR~~~~~~~ii 62 (202)
..+.+|+....++||+++|+++|.
T Consensus 209 ~~~~~~~~~~~~~ir~~~p~~~vt 232 (374)
T PF02449_consen 209 DRVAEFFRWQADIIREYDPDHPVT 232 (374)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-EEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceEE
Confidence 455577788899999999999875
No 27
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=68.53 E-value=22 Score=30.54 Aligned_cols=89 Identities=21% Similarity=0.167 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC-CCCCCCCCCCCCCCCCC
Q 043245 4 KSFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS-RIEPIDPSGLGPMDPRD 82 (202)
Q Consensus 4 ~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d-~~~~~~~~~~~~~~~~~ 82 (202)
-+..+++...+.|. ...+.+.++.||=..+.-+.+.|.+..+.+++++.+++|+..=+++. -|.. . - .|.
T Consensus 158 i~~~F~~~q~~~yG-~~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~--~-----~-fW~ 228 (333)
T PF05089_consen 158 IAKLFYEEQIKLYG-TDHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYY--D-----P-FWT 228 (333)
T ss_dssp HHHHHHHHHHHHH----SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE----------------BT
T ss_pred HHHHHHHHHHHhcC-CCceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEccccccc--c-----c-ccC
Confidence 34567777777886 67799999999976544455679999999999999999986643431 2211 0 0 122
Q ss_pred C---CCcCCCCCCCCceeeeec
Q 043245 83 P---RELFPLTSDLNGSVIDVH 101 (202)
Q Consensus 83 ~---~~~~~~~~~~~nvv~d~H 101 (202)
+ ..++..++.++-+|+|..
T Consensus 229 ~~~~~a~L~~Vp~~~mliLDL~ 250 (333)
T PF05089_consen 229 PNPIKALLSGVPKGRMLILDLF 250 (333)
T ss_dssp TBS-HHHHTT-SGGGEEEEETT
T ss_pred cchHHHHHcCCCCCCeEEEEcc
Confidence 2 234444466677888854
No 28
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=68.22 E-value=39 Score=25.20 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCC-CCceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 043245 6 FQILTTCNFRYAS-CPSLYAVEL-INEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMS 64 (202)
Q Consensus 6 ~~~~~~ia~~y~~-~~~v~g~el-lNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~ 64 (202)
.+++..+.+.... .|.++-+.+ .|+-.. +.+.+...+-|.+.++.||+..|+.+|++.
T Consensus 36 ~~~~~~~~~~~~~~~p~~vvi~~G~ND~~~-~~~~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 36 ADCLHYFDRLVLPYQPRRVVLYAGDNDLAS-GRTPEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred HHHHHHHHhhhccCCCCEEEEEEecCcccC-CCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 3444444333332 465555655 677432 446778888899999999998888766553
No 29
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=62.40 E-value=1.1e+02 Score=26.86 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCC-CceeEEEeecCCCCCC------CChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCC
Q 043245 7 QILTTCNFRYASC-PSLYAVELINEPLSPG------VSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMD 79 (202)
Q Consensus 7 ~~~~~ia~~y~~~-~~v~g~ellNEP~~~~------~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~ 79 (202)
+.+.....+++++ -.+.++.|=|||.-.. ...+...+|..+-. +.+..++-||+-|.+.. .+
T Consensus 153 ~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl---~si~~~~rV~~pes~~~-~~------- 221 (433)
T COG5520 153 DYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYL---ASINAEMRVIIPESFKD-LP------- 221 (433)
T ss_pred HHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhh---hhhccccEEecchhccc-cc-------
Confidence 3455555666666 3688999999997521 12344445554433 33455677777666642 11
Q ss_pred CCCCC-CcCCCCCCC-CceeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCCC-ccCHHHH
Q 043245 80 PRDPR-ELFPLTSDL-NGSVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPVP-EASKEDL 156 (202)
Q Consensus 80 ~~~~~-~~~~~~~~~-~nvv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~~-~~~~~~~ 156 (202)
.+ ++ .+.++ ... .--++..|.|-.- ..+.+..+.. ....+.-+|+.|=......+ .++++.+
T Consensus 222 ~~-~dp~lnDp-~a~a~~~ilg~H~Ygg~----v~~~p~~lak---------~~~~gKdlwmte~y~~esd~~s~dr~~~ 286 (433)
T COG5520 222 NM-SDPILNDP-KALANMDILGTHLYGGQ----VSDQPYPLAK---------QKPAGKDLWMTECYPPESDPNSADREAL 286 (433)
T ss_pred cc-ccccccCH-hHhcccceeEeeecccc----cccchhhHhh---------CCCcCCceEEeecccCCCCCCcchHHHH
Confidence 11 12 12222 122 2347899999652 1111111110 01124457777765543322 2233333
Q ss_pred HHHHHHHHHHHhhCCccEEEEecccCC
Q 043245 157 QRFAKAQQEVYGNATFGWGYWTLKTLN 183 (202)
Q Consensus 157 ~~~~~~Q~~~~~~~~~Gw~fWt~K~e~ 183 (202)
.-+.....--.+....|..+|...-..
T Consensus 287 ~~~~hi~~gm~~gg~~ayv~W~i~~~~ 313 (433)
T COG5520 287 HVALHIHIGMTEGGFQAYVWWNIRLDY 313 (433)
T ss_pred HHHHHHHhhccccCccEEEEEEEeecc
Confidence 333222223334456688899887643
No 30
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=60.94 E-value=1e+02 Score=25.95 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=87.8
Q ss_pred CCCCceeEEEeecCCCCC-CCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCc
Q 043245 17 ASCPSLYAVELINEPLSP-GVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPIDPSGLGPMDPRDPRELFPLTSDLNG 95 (202)
Q Consensus 17 ~~~~~v~g~ellNEP~~~-~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 95 (202)
.+-+.|.++-+=||-.-. .++..+|-++..++-.++.+.+-+.||.-.|.|.. +-. + ..+.. ...-
T Consensus 129 ~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~--------~~~-n-p~l~~---~SDf 195 (305)
T COG5309 129 NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNV--------VIN-N-PELCQ---ASDF 195 (305)
T ss_pred CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeeccccee--------eeC-C-hHHhh---hhhh
Confidence 345788888888887642 46789999999999999998888888877777753 000 1 12222 2356
Q ss_pred eeeeecceeeecCCCccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCCC-----ccCHHHHHHHHHHHHHHHhhC
Q 043245 96 SVIDVHYYNSNKSMTVQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPVP-----EASKEDLQRFAKAQQEVYGNA 170 (202)
Q Consensus 96 vv~d~H~Y~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~~-----~~~~~~~~~~~~~Q~~~~~~~ 170 (202)
++.-.|.|.-- .+..+........+-..++. +...+.+++|||=|=-.++. ...+++...|++.-+.+..++
T Consensus 196 ia~N~~aYwd~--~~~a~~~~~f~~~q~e~vqs-a~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~ 272 (305)
T COG5309 196 IAANAHAYWDG--QTVANAAGTFLLEQLERVQS-ACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC 272 (305)
T ss_pred hhcccchhccc--cchhhhhhHHHHHHHHHHHH-hcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc
Confidence 78888888653 11111111111000011211 11123799999988654321 135677788888888887766
Q ss_pred CccEEEE
Q 043245 171 TFGWGYW 177 (202)
Q Consensus 171 ~~Gw~fW 177 (202)
|..-++-
T Consensus 273 G~d~fvf 279 (305)
T COG5309 273 GYDVFVF 279 (305)
T ss_pred CccEEEe
Confidence 6555443
No 31
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=59.91 E-value=64 Score=30.10 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCCCceeEEEeecCCCCC-------------CCChHHHHHHHHHHHHHHHh-cCCCcEEEEcCCCCCCC
Q 043245 6 FQILTTCNFRYASCPSLYAVELINEPLSP-------------GVSLERLNKYYKAGYDAVRN-HSPTAYVVMSSRIEPID 71 (202)
Q Consensus 6 ~~~~~~ia~~y~~~~~v~g~ellNEP~~~-------------~~~~~~l~~~y~~a~~~IR~-~~~~~~iii~d~~~~~~ 71 (202)
.+=.+.=+.|.+.+|+|+-+.==||-... .+...+..-+|.+.+..+.. ..+.+|.|++..-++.
T Consensus 420 ~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPsNG~- 498 (867)
T KOG2230|consen 420 REEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPSNGK- 498 (867)
T ss_pred HHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCCCCc-
Confidence 44556677889999999988877775420 11223333445554444433 4577887775432221
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCceeeeecceeee
Q 043245 72 PSGLGPMDPRDPRELFPLTSDLNGSVIDVHYYNSN 106 (202)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~nvv~d~H~Y~~~ 106 (202)
. ..+.+.... .+..|--=|+|+|.-+
T Consensus 499 ----e----te~e~~VS~-NP~dn~~GDVHfYdy~ 524 (867)
T KOG2230|consen 499 ----E----TEPENYVSS-NPQDNQNGDVHFYDYT 524 (867)
T ss_pred ----c----cCccccccC-CCccccCCceEeeehh
Confidence 0 122333333 3467778899999876
No 32
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=54.11 E-value=49 Score=27.35 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=36.2
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
.||.-..++|.+. ||-||.. ++|...-..+| +.++.+|+.+..++++-||-
T Consensus 149 ~lARAL~~~p~ll---lLDEP~~-gvD~~~~~~i~-~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 149 LLARALAQNPDLL---LLDEPFT-GVDVAGQKEIY-DLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred HHHHHhccCCCEE---EecCCcc-cCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCc
Confidence 4667777888866 8899986 78888777887 55666676655555555663
No 33
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=53.96 E-value=17 Score=22.14 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCCcEEEEcCC
Q 043245 45 YKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 45 y~~a~~~IR~~~~~~~iii~d~ 66 (202)
+.++.+.|+++||+..|++.+.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~~v 50 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVSDV 50 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE---
T ss_pred HHHHHHHHHHhCCCEEEEEEcc
Confidence 3567889999999999988764
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.02 E-value=52 Score=27.09 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
.||.-....|.|. ||-||.+ .+|.-.=....+...+..++...++.+|-||
T Consensus 140 aiARAL~~~P~lL---LlDEPFg-ALDalTR~~lq~~l~~lw~~~~~TvllVTHd 190 (248)
T COG1116 140 AIARALATRPKLL---LLDEPFG-ALDALTREELQDELLRLWEETRKTVLLVTHD 190 (248)
T ss_pred HHHHHHhcCCCEE---EEcCCcc-hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 3555566678766 8999997 6665544556666777777777666666676
No 35
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=50.79 E-value=29 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhc------CCCcEEEEcCCCC
Q 043245 39 ERLNKYYKAGYDAVRNH------SPTAYVVMSSRIE 68 (202)
Q Consensus 39 ~~l~~~y~~a~~~IR~~------~~~~~iii~d~~~ 68 (202)
..+.+||++.++++++. +.+.+|+-+|||.
T Consensus 50 ~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPGf~ 85 (133)
T PF03464_consen 50 KALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPGFT 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEESTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccEEEEECCHHH
Confidence 46789999999999987 3466777789884
No 36
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=48.56 E-value=1.2e+02 Score=25.94 Aligned_cols=136 Identities=11% Similarity=0.118 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC--CCCCCCCCCCCCCCCcCCCCCCCCceeeeecceeee-c----CCC
Q 043245 38 LERLNKYYKAGYDAVRNHSPTAYVVMSSRIEPI--DPSGLGPMDPRDPRELFPLTSDLNGSVIDVHYYNSN-K----SMT 110 (202)
Q Consensus 38 ~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~nvv~d~H~Y~~~-~----~~~ 110 (202)
.+.+.+|.+.|.+.|++.+-.+-+-|- |...+ +..++ +.++..+...++--..++|-.|+...+ . ...
T Consensus 169 ~~aI~~Fl~~a~~~l~~~~v~vSaDVf-G~~~~~~~~~~i----GQ~~~~~a~~vD~IsPMiYPSh~~~g~~g~~~P~~~ 243 (316)
T PF13200_consen 169 VDAITDFLAYAREELHPYGVPVSADVF-GYVAWSPDDMGI----GQDFEKIAEYVDYISPMIYPSHYGPGFFGIDKPDLE 243 (316)
T ss_pred HHHHHHHHHHHHHHHhHcCCCEEEEec-ccccccCCCCCc----CCCHHHHhhhCCEEEecccccccCcccCCCCCcccC
Confidence 478899999999999987744333221 11110 00000 012122222222225577888887654 1 122
Q ss_pred ccchHHHHHHhhHHHhhhhcCCCCCceEEeeeeccCCCCccCHHHHHHHHHHHHHHHhh-CCccEEEEec
Q 043245 111 VQQNIDFVCTNRSAQLNQITTPDGPLIFVGEWVAELPVPEASKEDLQRFAKAQQEVYGN-ATFGWGYWTL 179 (202)
Q Consensus 111 ~~~~i~~~~~~~~~~l~~~~~~~~~p~~vGEws~~~~~~~~~~~~~~~~~~~Q~~~~~~-~~~Gw~fWt~ 179 (202)
+-+.+..........+......-.+.-++=-|.+..-.. ..+..-...+++|+++-+. ...||.+|+=
T Consensus 244 PY~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~-~~~~Yg~~ev~aQI~A~~d~g~~~~llWna 312 (316)
T PF13200_consen 244 PYEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGK-NYKEYGPEEVRAQIQALKDAGIEGWLLWNA 312 (316)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCeEeccccccccccccc-CccccCHHHHHHHHHHHHHcCCCeEEEECC
Confidence 223333222222122211000001111444444432111 1122225678899977654 4678999973
No 37
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=48.52 E-value=16 Score=28.12 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhCCC-----CceeEEEeecCCCC---CCCChHHHHHHHHHHHHHHHhcCCCcE
Q 043245 2 LMKSFQILTTCNFRYASC-----PSLYAVELINEPLS---PGVSLERLNKYYKAGYDAVRNHSPTAY 60 (202)
Q Consensus 2 ~~~t~~~~~~ia~~y~~~-----~~v~g~ellNEP~~---~~~~~~~l~~~y~~a~~~IR~~~~~~~ 60 (202)
+..|+++++.+-++|... +..-..|+|||-.. |+++...+.-.++. .++||+--|+..
T Consensus 51 ~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~Qt-AE~iR~~~Pd~d 116 (204)
T KOG1573|consen 51 TNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDPDLDEPNIQHALQT-AEAIRKDYPDED 116 (204)
T ss_pred hhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHH-HHHHHHhCCCcc
Confidence 357899999999999764 33445788888765 35566667766655 467888777643
No 38
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.24 E-value=91 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=23.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDA 51 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~ 51 (202)
||.-...+|.++ |+.||.. ++|......+++..-+.
T Consensus 141 laral~~~p~ll---llDEP~~-gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 141 IARALVNEPKVL---LLDEPLG-ALDLKLRKDMQLELKRL 176 (232)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHHHHHHH
Confidence 444445567655 7899986 78877666666544443
No 39
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=43.90 E-value=91 Score=24.66 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=23.3
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVR 53 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR 53 (202)
||.-...+|.++ ||.||.. ++|...-..+++-..+..+
T Consensus 140 laral~~~p~ll---lLDEP~~-gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 140 LARCLVREQPIL---LLDEPFS-ALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHHHHHHHH
Confidence 344444567655 7899986 7776666666554444433
No 40
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=42.88 E-value=29 Score=23.74 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 38 LERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 38 ~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
..-.++|.++-|.-+.+.+|+.||.|-..
T Consensus 29 SagvR~fvEk~Y~~lKkaNP~lPILIREc 57 (97)
T KOG3446|consen 29 SAGVREFVEKFYVNLKKANPDLPILIREC 57 (97)
T ss_pred chhHHHHHHHhhhhhhhcCCCCcEeehhh
Confidence 56789999999999999999999999553
No 41
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=42.65 E-value=54 Score=26.18 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHhC-CCCceeEEEeec-CCCCCCCChHHHHHHH-HHHHHHHHhcCCCcE--EEEcC
Q 043245 8 ILTTCNFRYA-SCPSLYAVELIN-EPLSPGVSLERLNKYY-KAGYDAVRNHSPTAY--VVMSS 65 (202)
Q Consensus 8 ~~~~ia~~y~-~~~~v~g~ellN-EP~~~~~~~~~l~~~y-~~a~~~IR~~~~~~~--iii~d 65 (202)
.|.++|..=. .+..|.|++|++ ||.. +.+.-...++- ..+++.||+..|+.+ +|++|
T Consensus 82 sWsQVavqr~~p~g~v~gVDllh~~p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 82 SWSQVAVQRVNPNGMVLGVDLLHIEPPE-GATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred hHHHHHHHhhCCCceEEEEeeeeccCCC-CcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 3667776644 446899999998 5543 32211111222 357888999888866 57777
No 42
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.96 E-value=92 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
.||.-...+|.|+ |+.||.. ++|...-..+++
T Consensus 105 ~laral~~~p~il---llDEPt~-~LD~~~~~~l~~ 136 (173)
T cd03230 105 ALAQALLHDPELL---ILDEPTS-GLDPESRREFWE 136 (173)
T ss_pred HHHHHHHcCCCEE---EEeCCcc-CCCHHHHHHHHH
Confidence 3455556677766 8999986 677554444443
No 43
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=41.75 E-value=1e+02 Score=25.49 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 10 TTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 10 ~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
..||.-.+++|.|+ ||=||.. .+|...-.+.++-..+.-|+.+-...+++||-
T Consensus 147 v~iArALaQ~~~iL---LLDEPTs-~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 147 VLIARALAQETPIL---LLDEPTS-HLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHhcCCCEE---EeCCCcc-ccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45677777888755 8999986 56655444444444444445555667777885
No 44
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=40.74 E-value=98 Score=24.19 Aligned_cols=41 Identities=5% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH-HHHHHHhcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA-GYDAVRNHS 56 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~-a~~~IR~~~ 56 (202)
||.-....|.|+ |+-||.. ++|......+.+. ..+.+++.+
T Consensus 151 laral~~~p~il---llDEPt~-~LD~~~~~~l~~~~ll~~~~~~~ 192 (218)
T cd03290 151 VARALYQNTNIV---FLDDPFS-ALDIHLSDHLMQEGILKFLQDDK 192 (218)
T ss_pred HHHHHhhCCCEE---EEeCCcc-ccCHHHHHHHHHHHHHHHHhcCC
Confidence 344444456655 8899986 7777767777764 666676643
No 45
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.56 E-value=98 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=16.3
Q ss_pred HHHHHHHhcCC-CcEEEEcCCC
Q 043245 47 AGYDAVRNHSP-TAYVVMSSRI 67 (202)
Q Consensus 47 ~a~~~IR~~~~-~~~iii~d~~ 67 (202)
+|+..||++-| -+.|||++..
T Consensus 70 ~aI~rIr~IHPPAHiIVIs~r~ 91 (125)
T COG1844 70 KAIGRIRKIHPPAHIIVISPRH 91 (125)
T ss_pred HHHHHHHhcCCCceEEEeCCCc
Confidence 67889999875 6788887764
No 46
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=40.07 E-value=44 Score=30.20 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=32.7
Q ss_pred hcCCCCCceEEeeeeccCCC----Cc----cCH-HHHHHHHHHHHHHHhh--CCccEEEEecc
Q 043245 129 ITTPDGPLIFVGEWVAELPV----PE----ASK-EDLQRFAKAQQEVYGN--ATFGWGYWTLK 180 (202)
Q Consensus 129 ~~~~~~~p~~vGEws~~~~~----~~----~~~-~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K 180 (202)
+.++++.|++|.|-|++... .+ ..+ +.+++++++.+.+-+. .-.|.+.||+=
T Consensus 360 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~ 422 (474)
T PRK09852 360 MYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCI 422 (474)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccc
Confidence 34567789999999998532 11 112 3455666655555543 34789999974
No 47
>PRK00865 glutamate racemase; Provisional
Probab=40.01 E-value=1.6e+02 Score=24.10 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 043245 6 FQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVM 63 (202)
Q Consensus 6 ~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii 63 (202)
+-+++.|.+++.+.+-+.--+-.|=|-+ .-+.+.+.++..++++.+.+.+.+..||-
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG-~ks~~~i~~~~~~~~~~L~~~g~d~iVIa 74 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYG-EKSEEEIRERTLEIVEFLLEYGVKMLVIA 74 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5689999999999998999999999997 44678888998888888887777765543
No 48
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=39.92 E-value=1.2e+02 Score=23.76 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||......|.++ |+.||.. ++|...-..+++. ++.+++
T Consensus 152 laral~~~p~il---llDEP~~-~LD~~~~~~l~~~-l~~~~~ 189 (220)
T TIGR02982 152 IARALVHRPKLV---LADEPTA-ALDSKSGRDVVEL-MQKLAR 189 (220)
T ss_pred HHHHHhcCCCEE---EEeCCCC-cCCHHHHHHHHHH-HHHHHH
Confidence 444445567655 8999986 7776554444433 444444
No 49
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=39.09 E-value=1.1e+02 Score=24.37 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=23.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
||.-...+|.++ ||.||.. ++|......+. +.++.+++.+
T Consensus 156 laral~~~p~il---lLDEPt~-~LD~~~~~~l~-~~l~~l~~~~ 195 (248)
T PRK09580 156 ILQMAVLEPELC---ILDESDS-GLDIDALKIVA-DGVNSLRDGK 195 (248)
T ss_pred HHHHHHcCCCEE---EEeCCCc-cCCHHHHHHHH-HHHHHHHhCC
Confidence 344444456655 7899986 67766555444 3445555433
No 50
>PLN02849 beta-glucosidase
Probab=38.32 E-value=52 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=32.7
Q ss_pred cCCCCC-ceEEeeeeccCCCC------ccCH-HHHHHHHHHHHHHHhh--CCccEEEEecc
Q 043245 130 TTPDGP-LIFVGEWVAELPVP------EASK-EDLQRFAKAQQEVYGN--ATFGWGYWTLK 180 (202)
Q Consensus 130 ~~~~~~-p~~vGEws~~~~~~------~~~~-~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K 180 (202)
.++++. |++|.|-|++.... +..+ +.+++++++.+++.+. .-.|.+.||+=
T Consensus 380 ~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~ 440 (503)
T PLN02849 380 KQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFM 440 (503)
T ss_pred HHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 345666 79999999985321 1122 3456677766666653 34689999974
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.30 E-value=1.3e+02 Score=23.71 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=20.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
||.-....|.++ ||.||.. ++|...-..+++-..
T Consensus 151 la~al~~~p~ll---lLDEP~~-~LD~~~~~~l~~~l~ 184 (233)
T cd03258 151 IARALANNPKVL---LCDEATS-ALDPETTQSILALLR 184 (233)
T ss_pred HHHHHhcCCCEE---EecCCCC-cCCHHHHHHHHHHHH
Confidence 344444556655 7899986 677655555544333
No 52
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=37.84 E-value=19 Score=32.12 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=34.1
Q ss_pred CCC-CceEEeeeeccCCCC-------cc-CHHHHHHHHHHHHHHHhh--CCccEEEEecccCCCCCCCCChHHHHhCCC
Q 043245 132 PDG-PLIFVGEWVAELPVP-------EA-SKEDLQRFAKAQQEVYGN--ATFGWGYWTLKTLNNERKHWSLEWMIENGY 199 (202)
Q Consensus 132 ~~~-~p~~vGEws~~~~~~-------~~-~~~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K~e~~~~~~Ws~~~~~~~G~ 199 (202)
+++ .|++|.|-|++.... +. +...+++++.+.+.+-+. .-.|.+.||+=. +-+|.---....|+
T Consensus 352 ~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~D----n~Ew~~Gy~~rfGl 426 (455)
T PF00232_consen 352 RYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLD----NFEWAEGYKKRFGL 426 (455)
T ss_dssp HHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-------BGGGGGGSE--S
T ss_pred ccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeecccc----ccccccCccCccCc
Confidence 444 899999999986431 11 123456677766666653 346899999742 25565433344443
No 53
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.46 E-value=1.8e+02 Score=21.88 Aligned_cols=58 Identities=21% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCceeEEE-eecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEc
Q 043245 6 FQILTTCNFRYASCPSLYAVE-LINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMS 64 (202)
Q Consensus 6 ~~~~~~ia~~y~~~~~v~g~e-llNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~ 64 (202)
.++++.|.+--+..|.++-|. =.|+-.. ..+...+.+-|.+.++.||+..|+.+|++.
T Consensus 54 ~~~~~~l~~~~~~~pd~Vii~~G~ND~~~-~~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 54 ADLLRQLAPLPETRFDVAVISIGVNDVTH-LTSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred HHHHHHHHhcccCCCCEEEEEecccCcCC-CCCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 344444443112234444332 2344432 335677778888889999987788777663
No 54
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=37.31 E-value=1.4e+02 Score=23.14 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=19.5
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
|......|.|+ |+.||.. ++|......+++...
T Consensus 140 aral~~~p~ll---llDEPt~-~LD~~~~~~~~~~l~ 172 (213)
T TIGR01277 140 ARCLVRPNPIL---LLDEPFS-ALDPLLREEMLALVK 172 (213)
T ss_pred HHHHhcCCCEE---EEcCCCc-cCCHHHHHHHHHHHH
Confidence 33334456655 7899986 677665555554333
No 55
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=37.16 E-value=1.2e+02 Score=24.42 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=20.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-....|.|+ ||.||.. ++|......+.+.
T Consensus 163 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 194 (262)
T PRK09984 163 IARALMQQAKVI---LADEPIA-SLDPESARIVMDT 194 (262)
T ss_pred HHHHHhcCCCEE---EecCccc-cCCHHHHHHHHHH
Confidence 333344567666 8999986 7776655555443
No 56
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.83 E-value=1.3e+02 Score=23.82 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=18.4
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
|.-...+|.|+ ||-||.. ++|......+++.
T Consensus 156 a~al~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 186 (241)
T cd03256 156 ARALMQQPKLI---LADEPVA-SLDPASSRQVMDL 186 (241)
T ss_pred HHHHhcCCCEE---EEeCccc-cCCHHHHHHHHHH
Confidence 33334456655 7889986 6776555555443
No 57
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=36.38 E-value=1.6e+02 Score=20.92 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 043245 18 SCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRI 67 (202)
Q Consensus 18 ~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~ 67 (202)
..|.++|+..+..- .. ...+..+.||+..|+.+|+++...
T Consensus 38 ~~pdiv~~S~~~~~---------~~-~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 38 LKPDVVGISLMTSA---------IY-EALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred cCCCEEEEeecccc---------HH-HHHHHHHHHHHHCCCCEEEECCcc
Confidence 46788899875421 11 456778899999999999887544
No 58
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=36.21 E-value=1.2e+02 Score=26.46 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
||.-...+|.|+ ||.||.. ++|...-..+++...+..++.+..++++-||
T Consensus 175 LARALa~~P~IL---LlDEPts-~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd 224 (382)
T TIGR03415 175 LARAFAMDADIL---LMDEPFS-ALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred HHHHHhcCCCEE---EEECCCc-cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 444445567755 8999996 7776656665555444433333333333344
No 59
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.20 E-value=1.4e+02 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=19.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.|+ ||-||.. ++|...-..+++.
T Consensus 147 ia~al~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 178 (235)
T cd03261 147 LARALALDPELL---LYDEPTA-GLDPIASGVIDDL 178 (235)
T ss_pred HHHHHhcCCCEE---EecCCcc-cCCHHHHHHHHHH
Confidence 344444456655 7899986 6776554444433
No 60
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=36.09 E-value=70 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCCCCC
Q 043245 43 KYYKAGYDAVRNHSPTAYVVMSSRIEPIDP 72 (202)
Q Consensus 43 ~~y~~a~~~IR~~~~~~~iii~d~~~~~~~ 72 (202)
+.-.++++.||+.+|+++++=.-+|-++|+
T Consensus 42 e~V~~~i~~iR~ld~~~IF~KdRGFppgD~ 71 (104)
T PF09875_consen 42 EEVDKVIEEIRKLDPNHIFVKDRGFPPGDP 71 (104)
T ss_pred HHHHHHHHHHHhhCCCceEeecCCCCCCcc
Confidence 445678999999999998766667765443
No 61
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.00 E-value=1.8e+02 Score=21.42 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 7 QILTTCNFRYASCPSLYAVEL-INEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 7 ~~~~~ia~~y~~~~~v~g~el-lNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
++...|.+.....|.++-+.+ .|+-.. ..+.....+-+++.++.+|+..|+.+|++..
T Consensus 36 ~~~~~l~~~~~~~pd~vvl~~G~ND~~~-~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 36 GLLARLDEDVALQPKAIFIMIGINDLAQ-GTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred HHHHHHHHHhccCCCEEEEEeeccCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 344444333334454444433 577653 4567888888999999999988888877743
No 62
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=35.59 E-value=1.4e+02 Score=23.45 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=18.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.|+ ||.||.. ++|......+.+.
T Consensus 148 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 179 (225)
T PRK10247 148 LIRNLQFMPKVL---LLDEITS-ALDESNKHNVNEI 179 (225)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHH
Confidence 333334456655 7899986 6776554444433
No 63
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.49 E-value=1.5e+02 Score=22.98 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=19.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.++ ||-||.. ++|...-..+++
T Consensus 142 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~~ 172 (214)
T cd03297 142 LARALAAQPELL---LLDEPFS-ALDRALRLQLLP 172 (214)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHH
Confidence 444444567655 8899986 777665555554
No 64
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=35.28 E-value=1.6e+02 Score=22.96 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=18.9
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
|.-...+|.++ ||-||.. ++|...-..+++..-
T Consensus 157 aral~~~p~ll---lLDEPt~-~LD~~~~~~l~~~l~ 189 (228)
T cd03257 157 ARALALNPKLL---IADEPTS-ALDVSVQAQILDLLK 189 (228)
T ss_pred HHHHhcCCCEE---EecCCCC-CCCHHHHHHHHHHHH
Confidence 33334456655 7889986 677655554444333
No 65
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=35.22 E-value=1.5e+02 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=21.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYD 50 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~ 50 (202)
||.-...+|.|+ ||.||.. ++|......+++..-+
T Consensus 143 laral~~~p~ll---llDEP~~-~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 143 IARALLHRPALL---LLDEPTV-GLDPASRAAIVAHVRA 177 (236)
T ss_pred HHHHHhcCCCEE---EEcCCcc-CCCHHHHHHHHHHHHH
Confidence 344444466655 7899986 7777666666654333
No 66
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=35.08 E-value=1.4e+02 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.++ ||-||.. ++|...-..+++
T Consensus 157 laral~~~p~ll---llDEP~~-~LD~~~~~~l~~ 187 (252)
T TIGR03005 157 IARALAMRPKVM---LFDEVTS-ALDPELVGEVLN 187 (252)
T ss_pred HHHHHHcCCCEE---EEeCCcc-cCCHHHHHHHHH
Confidence 344444456655 7899986 677655555553
No 67
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=34.74 E-value=1.6e+02 Score=23.34 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=20.7
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 043245 16 YASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVR 53 (202)
Q Consensus 16 y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR 53 (202)
...+|.++ ||-||.. ++|......+++...+..+
T Consensus 129 l~~~p~ll---lLDEPt~-gLD~~~~~~l~~~l~~~~~ 162 (230)
T TIGR01184 129 LSIRPKVL---LLDEPFG-ALDALTRGNLQEELMQIWE 162 (230)
T ss_pred HHcCCCEE---EEcCCCc-CCCHHHHHHHHHHHHHHHH
Confidence 33456655 7899986 7776666665554444433
No 68
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=34.44 E-value=45 Score=19.88 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=26.8
Q ss_pred CceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 20 PSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 20 ~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
|..-||..++|..-+-.+-+.-++||+..++.|..+.
T Consensus 4 p~y~gigp~De~giP~~~vd~~kDWYktMFkqIHk~~ 40 (47)
T PF02208_consen 4 PHYEGIGPVDESGIPLSNVDRPKDWYKTMFKQIHKLH 40 (47)
T ss_pred CcCCCcCccccCCCccccccchhHHHHHHHHHHHhhc
Confidence 4456778888875542234667899999999998875
No 69
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.99 E-value=1.7e+02 Score=22.66 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=18.9
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
|.-...+|.++ ||.||.. ++|......+.+..
T Consensus 140 a~al~~~p~ll---llDEP~~-~LD~~~~~~l~~~l 171 (211)
T cd03298 140 ARVLVRDKPVL---LLDEPFA-ALDPALRAEMLDLV 171 (211)
T ss_pred HHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHHHH
Confidence 33334456655 7899986 67765555544433
No 70
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=33.38 E-value=1.6e+02 Score=23.60 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
||.-...+|.|+ ||.||.. ++|...-..+++..
T Consensus 151 laral~~~p~lL---lLDEPt~-~LD~~~~~~l~~~L 183 (254)
T PRK10418 151 IALALLCEAPFI---IADEPTT-DLDVVAQARILDLL 183 (254)
T ss_pred HHHHHhcCCCEE---EEeCCCc-ccCHHHHHHHHHHH
Confidence 334444566655 7889986 67765544444433
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.29 E-value=1.7e+02 Score=22.79 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
|.-...+|.++ ||-||.. ++|...-..+++-..
T Consensus 143 a~al~~~p~ll---lLDEPt~-~LD~~~~~~~~~~l~ 175 (220)
T cd03293 143 ARALAVDPDVL---LLDEPFS-ALDALTREQLQEELL 175 (220)
T ss_pred HHHHHcCCCEE---EECCCCC-CCCHHHHHHHHHHHH
Confidence 33334456655 7899986 677665555554433
No 72
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.29 E-value=1.7e+02 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=18.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.|+ ||.||.. ++|...-..+++
T Consensus 147 la~al~~~p~ll---llDEP~~-~LD~~~~~~l~~ 177 (239)
T cd03296 147 LARALAVEPKVL---LLDEPFG-ALDAKVRKELRR 177 (239)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHH
Confidence 333344456655 7899986 677655555544
No 73
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=33.21 E-value=1.7e+02 Score=22.56 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=19.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.++ ||-||.. ++|...-..+++
T Consensus 141 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~ 171 (213)
T cd03301 141 LGRAIVREPKVF---LMDEPLS-NLDAKLRVQMRA 171 (213)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHH
Confidence 344444456655 7899986 777665555544
No 74
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=32.99 E-value=1.4e+02 Score=22.92 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAV 52 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~I 52 (202)
||.-...+|.++ |+-||.. ++|......+++..++..
T Consensus 138 laral~~~p~ll---llDEP~~-~LD~~~~~~l~~~ll~~~ 174 (204)
T cd03250 138 LARAVYSDADIY---LLDDPLS-AVDAHVGRHIFENCILGL 174 (204)
T ss_pred HHHHHhcCCCEE---EEeCccc-cCCHHHHHHHHHHHHHHh
Confidence 344444566655 7889986 677666666666555444
No 75
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=32.58 E-value=1.4e+02 Score=25.68 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=22.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
||.-...+|.++ ||-||.. ++|...-..+.+...+..++.+
T Consensus 147 LARaL~~~P~lL---LLDEP~s-~LD~~~r~~l~~~l~~l~~~~g 187 (351)
T PRK11432 147 LARALILKPKVL---LFDEPLS-NLDANLRRSMREKIRELQQQFN 187 (351)
T ss_pred HHHHHHcCCCEE---EEcCCcc-cCCHHHHHHHHHHHHHHHHhcC
Confidence 344444467655 8899986 6775544444443333333333
No 76
>PLN02814 beta-glucosidase
Probab=32.47 E-value=64 Score=29.42 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=31.4
Q ss_pred cCCCCC-ceEEeeeeccCCCCc----cCH-HHHHHHHHHHHHHHhh--CCccEEEEecc
Q 043245 130 TTPDGP-LIFVGEWVAELPVPE----ASK-EDLQRFAKAQQEVYGN--ATFGWGYWTLK 180 (202)
Q Consensus 130 ~~~~~~-p~~vGEws~~~~~~~----~~~-~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K 180 (202)
.++++. |++|.|-|++....+ ..+ +.+++++++.+.+-+. .-.|.+.||+=
T Consensus 382 ~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSll 440 (504)
T PLN02814 382 KQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMI 440 (504)
T ss_pred HHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 345555 799999999753211 122 3455666655566543 24689999974
No 77
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=32.17 E-value=1.4e+02 Score=25.69 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=22.5
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
|.-...+|.++ ||-||.. ++|...-..+.+...+..++.+
T Consensus 146 ARaL~~~P~ll---LLDEP~s-~LD~~~r~~l~~~L~~l~~~~~ 185 (353)
T TIGR03265 146 ARALATSPGLL---LLDEPLS-ALDARVREHLRTEIRQLQRRLG 185 (353)
T ss_pred HHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHHHHHHHHHhcC
Confidence 33334457655 8899986 6775544444444444444434
No 78
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.12 E-value=1.9e+02 Score=22.61 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
||.-...+|.++ |+-||.. ++|...-..+++..
T Consensus 142 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~~~l 174 (220)
T cd03265 142 IARSLVHRPEVL---FLDEPTI-GLDPQTRAHVWEYI 174 (220)
T ss_pred HHHHHhcCCCEE---EEcCCcc-CCCHHHHHHHHHHH
Confidence 334444456655 7889986 67765555554333
No 79
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=32.07 E-value=1.6e+02 Score=25.37 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVR 53 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR 53 (202)
||.-...+|.|+ ||-||.. ++|...-....+. ++.++
T Consensus 145 lARAL~~~P~ll---LLDEP~s-~LD~~~r~~l~~~-l~~l~ 181 (356)
T PRK11650 145 MGRAIVREPAVF---LFDEPLS-NLDAKLRVQMRLE-IQRLH 181 (356)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHH-HHHHH
Confidence 344444567765 8999986 6775433333333 33343
No 80
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.95 E-value=1.8e+02 Score=23.57 Aligned_cols=33 Identities=21% Similarity=0.110 Sum_probs=19.1
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
|.-...+|.|+ ||.||.. ++|......+++...
T Consensus 162 aral~~~p~vl---lLDEP~~-~LD~~~~~~l~~~l~ 194 (261)
T PRK14258 162 ARALAVKPKVL---LMDEPCF-GLDPIASMKVESLIQ 194 (261)
T ss_pred HHHHhcCCCEE---EEeCCCc-cCCHHHHHHHHHHHH
Confidence 33333456655 7899986 677655555544333
No 81
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=31.87 E-value=2.4e+02 Score=25.57 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEeecCCCCCCC-ChHHHHHHHHHHHHHHHhc---CCCcEEEEcC
Q 043245 3 MKSFQILTTCNFRYASCPSLYAVELINEPLSPGV-SLERLNKYYKAGYDAVRNH---SPTAYVVMSS 65 (202)
Q Consensus 3 ~~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~-~~~~l~~~y~~a~~~IR~~---~~~~~iii~d 65 (202)
+..++.+++++++|++.+ ..|+--+|+...... ....+.+-+.+.++.+.+. +...+|+++|
T Consensus 276 ~~~~dy~~~f~~~y~~~~-~F~~~w~~~~~h~~~~~~~~~D~~~~~~l~~~~~~g~l~nT~vi~~SD 341 (497)
T PF02995_consen 276 EYLLDYIEQFMEAYKDRP-KFGFFWFNSLSHDDFNGPSSLDDDLLDFLEKLQEEGVLDNTFVIFMSD 341 (497)
T ss_pred HHHHHHHHHHHHHhhccc-eeeEEEeccccccccchhHHHHHHHHHHHHHhhhcCcccccEEEEEcC
Confidence 467899999999999999 677888898865321 2344555555555666654 3456677787
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.77 E-value=1.8e+02 Score=23.14 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=17.8
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-...+|.++ +|.||.. ++|...-..+.
T Consensus 146 laral~~~p~ll---llDEPt~-~LD~~~~~~l~ 175 (242)
T cd03295 146 VARALAADPPLL---LMDEPFG-ALDPITRDQLQ 175 (242)
T ss_pred HHHHHhcCCCEE---EecCCcc-cCCHHHHHHHH
Confidence 344444456655 7899986 67755444443
No 83
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=31.64 E-value=1.7e+02 Score=23.16 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=22.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
||.-....|.++ |+.||.. ++|......++ +.++.+++.+
T Consensus 152 laral~~~p~ll---ilDEPt~-~LD~~~~~~l~-~~l~~~~~~~ 191 (242)
T PRK11124 152 IARALMMEPQVL---LFDEPTA-ALDPEITAQIV-SIIRELAETG 191 (242)
T ss_pred HHHHHhcCCCEE---EEcCCCC-cCCHHHHHHHH-HHHHHHHHcC
Confidence 344444456655 7899986 67755444443 3455555433
No 84
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=31.64 E-value=1.4e+02 Score=26.00 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
||.-...+|.++ ||-||.. ++|...-....+...+..|+.+
T Consensus 160 LARAL~~~P~lL---LLDEP~s-~LD~~~r~~l~~~l~~l~~~~g 200 (377)
T PRK11607 160 LARSLAKRPKLL---LLDEPMG-ALDKKLRDRMQLEVVDILERVG 200 (377)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHHHHHHHHhcC
Confidence 344444567766 8999986 7776555555555555555544
No 85
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=31.25 E-value=1.8e+02 Score=23.57 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=21.4
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYD 50 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~ 50 (202)
||.-...+|.|+ ||.||.. ++|......+++...+
T Consensus 158 laral~~~p~ll---lLDEPt~-~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 158 IAMLVAQDSRCL---LLDEPTS-ALDIAHQVDVLALVHR 192 (265)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHHHHHH
Confidence 444444567655 7899986 7776665555544433
No 86
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.17 E-value=2e+02 Score=22.19 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=18.3
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-...+|.|+ ||-||.. ++|...-..++
T Consensus 141 la~al~~~p~~l---llDEPt~-~LD~~~~~~l~ 170 (213)
T cd03259 141 LARALAREPSLL---LLDEPLS-ALDAKLREELR 170 (213)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHH
Confidence 344444456655 7889986 67765544444
No 87
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=31.01 E-value=1.7e+02 Score=24.73 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
|.-...+|.++ ||-||.. ++|...-..+++...+..++
T Consensus 112 araL~~~p~ll---lLDEP~s-~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 112 ARALVFKPKIL---LLDEPLS-ALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHhCCCEE---EEeCCCc-cCCHHHHHHHHHHHHHHHHh
Confidence 33334456655 7899986 77766555555444433333
No 88
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=30.85 E-value=1.8e+02 Score=25.37 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=22.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
||.-....|.|+ ||-||.. ++|...-..+++..-+..++.+
T Consensus 155 LARaL~~~P~ll---LLDEP~s-~LD~~~r~~l~~~L~~l~~~~g 195 (375)
T PRK09452 155 IARAVVNKPKVL---LLDESLS-ALDYKLRKQMQNELKALQRKLG 195 (375)
T ss_pred HHHHHhcCCCEE---EEeCCCC-cCCHHHHHHHHHHHHHHHHhcC
Confidence 344444467655 8999986 6775544444433333334333
No 89
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.84 E-value=1.6e+02 Score=24.29 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.|+ ||.||.. ++|...-..+.+- +..+++
T Consensus 156 lAraL~~~P~ll---llDEPt~-~LD~~~~~~l~~~-L~~l~~ 193 (290)
T PRK13634 156 IAGVLAMEPEVL---VLDEPTA-GLDPKGRKEMMEM-FYKLHK 193 (290)
T ss_pred HHHHHHcCCCEE---EEECCcc-cCCHHHHHHHHHH-HHHHHH
Confidence 444445567655 8999986 6776555544433 334433
No 90
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=30.73 E-value=80 Score=28.52 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=33.7
Q ss_pred hcCCCCCceEEeeeeccCCC----Cc----cCH-HHHHHHHHHHHHHH-hh--CCccEEEEecc
Q 043245 129 ITTPDGPLIFVGEWVAELPV----PE----ASK-EDLQRFAKAQQEVY-GN--ATFGWGYWTLK 180 (202)
Q Consensus 129 ~~~~~~~p~~vGEws~~~~~----~~----~~~-~~~~~~~~~Q~~~~-~~--~~~Gw~fWt~K 180 (202)
+.++++.|++|.|=|++... .+ ..+ +.+++++++.+.+- +. .-.|.+.||+=
T Consensus 362 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~ 425 (476)
T PRK09589 362 FWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCI 425 (476)
T ss_pred HHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccc
Confidence 34467789999999998531 11 122 34567777666666 32 34789999974
No 91
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=30.60 E-value=2e+02 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=17.5
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
|.-...+|.|+ ||-||.. ++|......++
T Consensus 157 a~al~~~p~ll---llDEPt~-~LD~~~~~~l~ 185 (243)
T TIGR02315 157 ARALAQQPDLI---LADEPIA-SLDPKTSKQVM 185 (243)
T ss_pred HHHHhcCCCEE---EEeCCcc-cCCHHHHHHHH
Confidence 33334456655 7889986 67765555554
No 92
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=30.44 E-value=68 Score=27.29 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 043245 29 NEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRI 67 (202)
Q Consensus 29 NEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~ 67 (202)
+||.. -....+.+.|+++-+.|++.+|++.|||++..
T Consensus 17 ~~~~~--~~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH 53 (313)
T PRK13370 17 VDPAQ--EVLAEVNAVIAAAREFVAAFDPELVVLFAPDH 53 (313)
T ss_pred CCCCh--HHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 67753 23567778889999999999999999998754
No 93
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=30.40 E-value=1.7e+02 Score=23.73 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=19.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.|+ ||.||.. ++|......+++.
T Consensus 160 laral~~~p~ll---lLDEPt~-~LD~~~~~~l~~~ 191 (267)
T PRK15112 160 LARALILRPKVI---IADEALA-SLDMSMRSQLINL 191 (267)
T ss_pred HHHHHHhCCCEE---EEcCCcc-cCCHHHHHHHHHH
Confidence 333344456655 8999986 6776554444433
No 94
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.35 E-value=2.1e+02 Score=21.48 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=20.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.....+|.++ +|-||.. ++|......+++-
T Consensus 111 la~al~~~p~ll---ilDEP~~-~LD~~~~~~l~~~ 142 (178)
T cd03229 111 LARALAMDPDVL---LLDEPTS-ALDPITRREVRAL 142 (178)
T ss_pred HHHHHHCCCCEE---EEeCCcc-cCCHHHHHHHHHH
Confidence 444455567655 7899986 6776555544433
No 95
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.24 E-value=2.1e+02 Score=22.16 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=21.7
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
.||.-...+|.++ |+-||.. ++|...-+.+++..-
T Consensus 128 ~laral~~~p~ll---llDEPt~-~LD~~~~~~~~~~l~ 162 (202)
T cd03233 128 SIAEALVSRASVL---CWDNSTR-GLDSSTALEILKCIR 162 (202)
T ss_pred HHHHHHhhCCCEE---EEcCCCc-cCCHHHHHHHHHHHH
Confidence 3455555567655 8899986 677655555554333
No 96
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=30.23 E-value=1.9e+02 Score=19.98 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 19 CPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 19 ~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
+|.++|+.....|. . ....+..+.+|+.+|+.+|+++..
T Consensus 51 ~pd~V~iS~~~~~~-----~----~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 51 RPDVVGISVSMTPN-----L----PEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp TCSEEEEEESSSTH-----H----HHHHHHHHHHHTTCTTSEEEEEES
T ss_pred CCcEEEEEccCcCc-----H----HHHHHHHHHHHhcCCCCEEEEECC
Confidence 57788888765442 1 223556666999999999999753
No 97
>PLN02433 uroporphyrinogen decarboxylase
Probab=30.12 E-value=84 Score=26.88 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCceeEEEe--ecCCCCCCCChHHHHHHH----HHHHHHHHhcCCCcEEEEcC
Q 043245 3 MKSFQILTTCNFRYASCPSLYAVEL--INEPLSPGVSLERLNKYY----KAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 3 ~~t~~~~~~ia~~y~~~~~v~g~el--lNEP~~~~~~~~~l~~~y----~~a~~~IR~~~~~~~iii~d 65 (202)
.+.++.+.....+|...-.-.|.++ +-+|...-++....++|. ++.++.|++..++.++++|.
T Consensus 171 ~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~ 239 (345)
T PLN02433 171 HALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYA 239 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 3455555555555543211122232 366766556777777665 67888887765556666654
No 98
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=30.09 E-value=72 Score=28.83 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=33.8
Q ss_pred cCCCCCceEEeeeeccCCCC--------cc-CHHHHHHHHHHHHHHHh-h--CCccEEEEecc
Q 043245 130 TTPDGPLIFVGEWVAELPVP--------EA-SKEDLQRFAKAQQEVYG-N--ATFGWGYWTLK 180 (202)
Q Consensus 130 ~~~~~~p~~vGEws~~~~~~--------~~-~~~~~~~~~~~Q~~~~~-~--~~~Gw~fWt~K 180 (202)
.++++.|++|.|-|++.... +. +-+.++.++++.+.+-+ . .-.|.+.||+=
T Consensus 364 ~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~ 426 (478)
T PRK09593 364 WDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCI 426 (478)
T ss_pred HHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 34677899999999984321 11 12456777777777763 2 24689999974
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=29.99 E-value=2.2e+02 Score=22.16 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=18.5
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
|.-...+|.|+ ||-||.. ++|...-..+.+
T Consensus 153 aral~~~p~il---llDEPt~-~LD~~~~~~l~~ 182 (221)
T TIGR02211 153 ARALVNQPSLV---LADEPTG-NLDNNNAKIIFD 182 (221)
T ss_pred HHHHhCCCCEE---EEeCCCC-cCCHHHHHHHHH
Confidence 33344456655 7899986 677655555553
No 100
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.95 E-value=1.8e+02 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=19.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-....|.++ ||.||.. ++|...-..+.
T Consensus 151 lAral~~~p~lL---lLDEPt~-~LD~~~~~~l~ 180 (279)
T PRK13650 151 IAGAVAMRPKII---ILDEATS-MLDPEGRLELI 180 (279)
T ss_pred HHHHHHcCCCEE---EEECCcc-cCCHHHHHHHH
Confidence 444455567655 8999986 77765555554
No 101
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=29.93 E-value=1.8e+02 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=20.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-....|.++ ||.||.. ++|...-..+.+
T Consensus 155 laral~~~p~ll---llDEPt~-gLD~~~~~~l~~ 185 (280)
T PRK13633 155 IAGILAMRPECI---IFDEPTA-MLDPSGRREVVN 185 (280)
T ss_pred HHHHHHcCCCEE---EEeCCcc-cCCHHHHHHHHH
Confidence 444445567655 8899986 777665555553
No 102
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=29.88 E-value=1.9e+02 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=18.5
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 16 YASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 16 y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
...+|.|+ |+.||.. ++|......+++..
T Consensus 166 l~~~p~ll---llDEPt~-~LD~~~~~~l~~~l 194 (252)
T CHL00131 166 ALLDSELA---ILDETDS-GLDIDALKIIAEGI 194 (252)
T ss_pred HHcCCCEE---EEcCCcc-cCCHHHHHHHHHHH
Confidence 33456655 7899986 77766666665333
No 103
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=29.86 E-value=2.1e+02 Score=22.12 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.++ ||.||.. ++|...-..+++
T Consensus 147 laral~~~p~ll---llDEPt~-~LD~~~~~~~~~ 177 (214)
T cd03292 147 IARAIVNSPTIL---IADEPTG-NLDPDTTWEIMN 177 (214)
T ss_pred HHHHHHcCCCEE---EEeCCCC-cCCHHHHHHHHH
Confidence 344444466655 8899986 677655444443
No 104
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=29.64 E-value=2e+02 Score=22.70 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=17.6
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-...+|.|+ ||-||.. ++|...-..++
T Consensus 136 laral~~~p~vl---lLDEPt~-~LD~~~~~~l~ 165 (230)
T TIGR02770 136 IALALLLEPPFL---IADEPTT-DLDVVNQARVL 165 (230)
T ss_pred HHHHHhcCCCEE---EEcCCcc-ccCHHHHHHHH
Confidence 344444456655 7889986 67655444444
No 105
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=29.51 E-value=2e+02 Score=23.14 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.++ ||.||.. ++|......+.+
T Consensus 149 laral~~~p~ll---llDEP~~-~LD~~~~~~l~~ 179 (255)
T PRK11231 149 LAMVLAQDTPVV---LLDEPTT-YLDINHQVELMR 179 (255)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHH
Confidence 344444567655 8899986 777655544443
No 106
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=29.29 E-value=2.3e+02 Score=21.32 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ |+-||.. ++|......+++ .++.+++
T Consensus 108 laral~~~p~ll---llDEP~~-~LD~~~~~~~~~-~l~~~~~ 145 (180)
T cd03214 108 LARALAQEPPIL---LLDEPTS-HLDIAHQIELLE-LLRRLAR 145 (180)
T ss_pred HHHHHhcCCCEE---EEeCCcc-CCCHHHHHHHHH-HHHHHHH
Confidence 455555567766 7899986 677665555443 4445544
No 107
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=29.24 E-value=2.2e+02 Score=22.62 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=25.8
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVM 63 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii 63 (202)
|......|.++ ++.||.. ++|......+++.. ..+++......|++
T Consensus 142 aral~~~p~ll---llDEP~~-~LD~~~~~~~~~~l-~~~~~~~~~tvli~ 187 (237)
T TIGR00968 142 ARALAVEPQVL---LLDEPFG-ALDAKVRKELRSWL-RKLHDEVHVTTVFV 187 (237)
T ss_pred HHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHHHH-HHHHHhcCCEEEEE
Confidence 33344456655 7899986 77776666666543 34444322334444
No 108
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=29.06 E-value=2.1e+02 Score=23.21 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=19.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.|+ ||-||.. ++|......+++-
T Consensus 154 laral~~~p~ll---lLDEPt~-~LD~~~~~~l~~~ 185 (269)
T PRK11831 154 LARAIALEPDLI---MFDEPFV-GQDPITMGVLVKL 185 (269)
T ss_pred HHHHHhcCCCEE---EEcCCCc-cCCHHHHHHHHHH
Confidence 333344456655 7899986 7776555544433
No 109
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=28.68 E-value=2.2e+02 Score=22.57 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-....|.|+ ||-||.. ++|...-..+++
T Consensus 164 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~~ 194 (236)
T cd03267 164 IAAALLHEPEIL---FLDEPTI-GLDVVAQENIRN 194 (236)
T ss_pred HHHHHhcCCCEE---EEcCCCC-CCCHHHHHHHHH
Confidence 344444456655 8899986 777665555544
No 110
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.65 E-value=1.9e+02 Score=23.89 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVR 53 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR 53 (202)
||.-...+|.|+ ||.||.. ++|...-..+. +.++.++
T Consensus 156 laraL~~~p~il---llDEPt~-~LD~~~~~~l~-~~l~~l~ 192 (286)
T PRK13646 156 IVSILAMNPDII---VLDEPTA-GLDPQSKRQVM-RLLKSLQ 192 (286)
T ss_pred HHHHHHhCCCEE---EEECCcc-cCCHHHHHHHH-HHHHHHH
Confidence 444445567665 8899986 67654444333 3344443
No 111
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=28.65 E-value=2.1e+02 Score=22.54 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=20.8
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
||.-....|.++ ||-||.. ++|...-..+++...
T Consensus 153 laral~~~p~ll---llDEP~~-gLD~~~~~~~~~~l~ 186 (224)
T cd03220 153 FAIATALEPDIL---LIDEVLA-VGDAAFQEKCQRRLR 186 (224)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHHHH
Confidence 444444566655 7889986 677665555555433
No 112
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=28.59 E-value=76 Score=28.60 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=30.8
Q ss_pred cCCCCC--ceEEeeeeccCCC---Cc----cCH-HHHHHHHHHHHHHHhh--CCccEEEEecc
Q 043245 130 TTPDGP--LIFVGEWVAELPV---PE----ASK-EDLQRFAKAQQEVYGN--ATFGWGYWTLK 180 (202)
Q Consensus 130 ~~~~~~--p~~vGEws~~~~~---~~----~~~-~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K 180 (202)
.++++. |++|.|-|++... .+ ..+ +.+++++.+.+.+-+. .-.|.+.||+=
T Consensus 361 ~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~ 423 (467)
T TIGR01233 361 KNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLM 423 (467)
T ss_pred HHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 345665 6999999998531 11 112 3355666655555432 24689999974
No 113
>TIGR03356 BGL beta-galactosidase.
Probab=28.56 E-value=81 Score=27.99 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=31.8
Q ss_pred cCCCCC-ceEEeeeeccCCC---C----ccCH-HHHHHHHHHHHHHHhh--CCccEEEEecc
Q 043245 130 TTPDGP-LIFVGEWVAELPV---P----EASK-EDLQRFAKAQQEVYGN--ATFGWGYWTLK 180 (202)
Q Consensus 130 ~~~~~~-p~~vGEws~~~~~---~----~~~~-~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K 180 (202)
.++++. |++|.|-|++... . ++.+ ..+++++++.+.+-+. .-.|.+.|++=
T Consensus 332 ~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~ 393 (427)
T TIGR03356 332 KEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLL 393 (427)
T ss_pred HHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 445665 7999999997421 1 1122 3456666666665543 35789999974
No 114
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.43 E-value=2.4e+02 Score=22.46 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
.||.-|...|.|. ..-||.+ .++...=.+-..=....-|+.+....++-||.
T Consensus 156 AiARAfa~~P~vL---fADEPTG-NLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 156 ALARAFAGRPDVL---FADEPTG-NLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred HHHHHhcCCCCEE---eccCCCC-CcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 5788888889866 5789997 56655555555556777888887777767874
No 115
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=28.39 E-value=2.3e+02 Score=22.67 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=16.3
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 16 YASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 16 y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
...+|.++ ||-||.. ++|...-..+.+
T Consensus 168 l~~~p~ll---llDEPt~-~LD~~~~~~l~~ 194 (255)
T PRK11300 168 MVTQPEIL---MLDEPAA-GLNPKETKELDE 194 (255)
T ss_pred HhcCCCEE---EEcCCcc-CCCHHHHHHHHH
Confidence 33456655 7889986 676554444443
No 116
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=28.34 E-value=83 Score=28.46 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=33.6
Q ss_pred hcCCCCCceEEeeeeccCCC----Cc----cCH-HHHHHHHHHHHHHHh-h--CCccEEEEecc
Q 043245 129 ITTPDGPLIFVGEWVAELPV----PE----ASK-EDLQRFAKAQQEVYG-N--ATFGWGYWTLK 180 (202)
Q Consensus 129 ~~~~~~~p~~vGEws~~~~~----~~----~~~-~~~~~~~~~Q~~~~~-~--~~~Gw~fWt~K 180 (202)
+.++++.|++|.|-|++... .+ ..+ +.+++++++.+.+-+ . .-.|.+.||+=
T Consensus 363 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~ 426 (477)
T PRK15014 363 LYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCI 426 (477)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 34567789999999998531 11 112 345677776666663 2 24689999963
No 117
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.33 E-value=2e+02 Score=23.56 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=22.8
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDA 51 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~ 51 (202)
||.-...+|.++ |+-||.. ++|...-..+++..-+.
T Consensus 151 lAraL~~~p~ll---llDEPt~-~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 151 VAGIIALRPEII---ILDESTS-MLDPTGRQEIMRVIHEI 186 (277)
T ss_pred HHHHHHcCCCEE---EEeCCcc-cCCHHHHHHHHHHHHHH
Confidence 444444566655 7899986 78877777666544433
No 118
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=28.17 E-value=47 Score=19.96 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=10.5
Q ss_pred hCCCCceeEEEeec
Q 043245 16 YASCPSLYAVELIN 29 (202)
Q Consensus 16 y~~~~~v~g~ellN 29 (202)
|.....|+|||+||
T Consensus 35 ~d~~G~ivGIEIl~ 48 (50)
T PF10049_consen 35 YDEDGRIVGIEILD 48 (50)
T ss_pred ECCCCCEEEEEEEe
Confidence 34445799999998
No 119
>PLN02998 beta-glucosidase
Probab=28.09 E-value=80 Score=28.74 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=32.1
Q ss_pred cCCCCC-ceEEeeeeccCCCCc----cCH-HHHHHHHHHHHHHHhh--CCccEEEEecc
Q 043245 130 TTPDGP-LIFVGEWVAELPVPE----ASK-EDLQRFAKAQQEVYGN--ATFGWGYWTLK 180 (202)
Q Consensus 130 ~~~~~~-p~~vGEws~~~~~~~----~~~-~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K 180 (202)
.++++. |++|.|-|++....+ ..+ +.+++++++.+.+-+. .-.|.+.||+=
T Consensus 387 ~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~ 445 (497)
T PLN02998 387 KETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLM 445 (497)
T ss_pred HHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccch
Confidence 345665 699999999754211 122 3456666666666543 24689999974
No 120
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=28.09 E-value=2.3e+02 Score=21.77 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ |+-||.. ++|......++ +.++.+++
T Consensus 122 laral~~~p~il---llDEP~~-~LD~~~~~~l~-~~l~~~~~ 159 (194)
T cd03213 122 IALELVSNPSLL---FLDEPTS-GLDSSSALQVM-SLLRRLAD 159 (194)
T ss_pred HHHHHHcCCCEE---EEeCCCc-CCCHHHHHHHH-HHHHHHHh
Confidence 444455567655 7899986 77765555544 33344444
No 121
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=28.04 E-value=2e+02 Score=25.02 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=26.3
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
||.-...+|.|+ ||.||.. ++|...-..+.+...+.-++.+..++++-||
T Consensus 140 lARAL~~~p~iL---LlDEP~s-aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd 189 (363)
T TIGR01186 140 LARALAAEPDIL---LMDEAFS-ALDPLIRDSMQDELKKLQATLQKTIVFITHD 189 (363)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 334444556655 8999996 7776555555544443322334333333354
No 122
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=28.03 E-value=2.7e+02 Score=21.58 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=21.6
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.|+ ||-||.. ++|...-..+++ .+..+++
T Consensus 151 la~al~~~p~ll---lLDEP~~-~LD~~~~~~l~~-~l~~~~~ 188 (218)
T cd03255 151 IARALANDPKII---LADEPTG-NLDSETGKEVME-LLRELNK 188 (218)
T ss_pred HHHHHccCCCEE---EEcCCcc-cCCHHHHHHHHH-HHHHHHH
Confidence 444445567655 7899986 677655444443 3333433
No 123
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=27.70 E-value=76 Score=18.86 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 41 LNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 41 l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
.++|.+.-+..+...+|.+.|.+..
T Consensus 1 ~R~F~~~~lp~l~~~NP~v~~~v~~ 25 (52)
T PF05047_consen 1 ARDFLKNNLPTLKYHNPQVQFEVRR 25 (52)
T ss_dssp HHHHHHHTHHHHHHHSTT--EEEE-
T ss_pred CHhHHHHhHHHHHHHCCCcEEEEEE
Confidence 3688889999999999999998865
No 124
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=27.57 E-value=2.5e+02 Score=21.26 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
|.-...+|.++ ||-||.. ++|......+++.. ..+++
T Consensus 139 aral~~~p~ll---llDEPt~-~LD~~~~~~~~~~l-~~~~~ 175 (190)
T TIGR01166 139 AGAVAMRPDVL---LLDEPTA-GLDPAGREQMLAIL-RRLRA 175 (190)
T ss_pred HHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHHHH-HHHHH
Confidence 33334456655 7889986 77766655555443 33343
No 125
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.57 E-value=2.4e+02 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=20.3
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
||.-...+|.|+ ||-||.. ++|...-..+++-..
T Consensus 171 lAral~~~p~il---lLDEPt~-~LD~~~~~~l~~~l~ 204 (269)
T cd03294 171 LARALAVDPDIL---LMDEAFS-ALDPLIRREMQDELL 204 (269)
T ss_pred HHHHHhcCCCEE---EEcCCCc-cCCHHHHHHHHHHHH
Confidence 444444566655 7889986 677655555554333
No 126
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.55 E-value=2.4e+02 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
||......|.++ ++.||.. ++|...-..+++..
T Consensus 140 laral~~~p~ll---llDEPt~-gLD~~~~~~l~~~l 172 (235)
T cd03299 140 IARALVVNPKIL---LLDEPFS-ALDVRTKEKLREEL 172 (235)
T ss_pred HHHHHHcCCCEE---EECCCcc-cCCHHHHHHHHHHH
Confidence 333334456555 7899986 67765555544333
No 127
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=27.43 E-value=2.1e+02 Score=22.56 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=17.7
Q ss_pred CCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 17 ASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 17 ~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
..+|.|+ ||.||.. ++|......+++..
T Consensus 153 ~~~p~il---llDEPt~-~LD~~~~~~l~~~l 180 (237)
T PRK11614 153 MSQPRLL---LLDEPSL-GLAPIIIQQIFDTI 180 (237)
T ss_pred HhCCCEE---EEcCccc-cCCHHHHHHHHHHH
Confidence 3356655 7899986 77766555555433
No 128
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.32 E-value=2.5e+02 Score=21.42 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=24.1
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
.||.-...+|.|+ ++-||.. ++|...-..+.+. ++.+++
T Consensus 118 ~la~al~~~p~vl---llDEP~~-~LD~~~~~~l~~~-l~~~~~ 156 (192)
T cd03232 118 TIGVELAAKPSIL---FLDEPTS-GLDSQAAYNIVRF-LKKLAD 156 (192)
T ss_pred HHHHHHhcCCcEE---EEeCCCc-CCCHHHHHHHHHH-HHHHHH
Confidence 3455555667655 7899986 7776655555543 444444
No 129
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=27.31 E-value=2.2e+02 Score=22.83 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=19.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.|+ ||-||.. ++|......+++.
T Consensus 162 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 193 (258)
T PRK11701 162 IARNLVTHPRLV---FMDEPTG-GLDVSVQARLLDL 193 (258)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHHH
Confidence 344444466655 7889986 6776555544443
No 130
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=27.25 E-value=2.4e+02 Score=21.96 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=24.3
Q ss_pred HHHHHHHhC-CCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 9 LTTCNFRYA-SCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 9 ~~~ia~~y~-~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
++.+.++.. ..|.++ |+.||.. +++...-.......++.+++.+
T Consensus 94 ~~~iL~~~~~~~p~ll---llDEp~~-glD~~~~~~l~~~ll~~l~~~~ 138 (199)
T cd03283 94 LKEIVEKAKKGEPVLF---LLDEIFK-GTNSRERQAASAAVLKFLKNKN 138 (199)
T ss_pred HHHHHHhccCCCCeEE---EEecccC-CCCHHHHHHHHHHHHHHHHHCC
Confidence 445555544 245544 7999985 5554444444445566665443
No 131
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=27.22 E-value=2.4e+02 Score=22.33 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.|+ +|-||.. ++|......+++ .+..+++
T Consensus 147 la~al~~~p~ll---llDEP~~-~LD~~~~~~l~~-~l~~~~~ 184 (240)
T PRK09493 147 IARALAVKPKLM---LFDEPTS-ALDPELRHEVLK-VMQDLAE 184 (240)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHH-HHHHHHH
Confidence 344444456655 7889986 677665555554 3444443
No 132
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=27.22 E-value=87 Score=28.19 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=31.9
Q ss_pred cCCCCC--ceEEeeeeccCCCC--------ccCH-HHHHHHHHHHHHHHhh--CCccEEEEecc
Q 043245 130 TTPDGP--LIFVGEWVAELPVP--------EASK-EDLQRFAKAQQEVYGN--ATFGWGYWTLK 180 (202)
Q Consensus 130 ~~~~~~--p~~vGEws~~~~~~--------~~~~-~~~~~~~~~Q~~~~~~--~~~Gw~fWt~K 180 (202)
.++++. |++|.|-|++.... +..+ +.+++++++.+++-+. .-.|.+.||+=
T Consensus 362 ~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~ 425 (469)
T PRK13511 362 KKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLM 425 (469)
T ss_pred HHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccc
Confidence 345654 79999999974321 1122 3456667666666643 24789999974
No 133
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=26.88 E-value=2.7e+02 Score=20.68 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhC-CCCceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 043245 5 SFQILTTCNFRYA-SCPSLYAVEL-INEPLSPGVSLERLNKYYKAGYDAVRNHSPT 58 (202)
Q Consensus 5 t~~~~~~ia~~y~-~~~~v~g~el-lNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~ 58 (202)
+.++++.+-+... ..|.++-+.+ .|+... +.+.....+-+++.++.+|+.++.
T Consensus 44 ~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~-~~~~~~~~~~~~~li~~~~~~~~~ 98 (183)
T cd04501 44 TSQMLVRFYEDVIALKPAVVIIMGGTNDIIV-NTSLEMIKDNIRSMVELAEANGIK 98 (183)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCcccc-CCCHHHHHHHHHHHHHHHHHCCCc
Confidence 3445555544432 2355555555 676653 345667777788888999886644
No 134
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=26.72 E-value=2.7e+02 Score=21.31 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
.||.-...+|.++ ++-||.. ++|......+.+.
T Consensus 81 ~laral~~~p~ll---lLDEPts-~LD~~~~~~l~~~ 113 (177)
T cd03222 81 AIAAALLRNATFY---LFDEPSA-YLDIEQRLNAARA 113 (177)
T ss_pred HHHHHHhcCCCEE---EEECCcc-cCCHHHHHHHHHH
Confidence 3455555667655 7889986 6776555555443
No 135
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=26.69 E-value=2.8e+02 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 043245 4 KSFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRI 67 (202)
Q Consensus 4 ~t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~ 67 (202)
+..+-|..||+.|.=....+=+|..-. . ..+.+.|..|.+.+.+..++..|...|+.=|+.
T Consensus 90 ~~a~kLv~lak~yGfDGw~iN~E~~~~-~--~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~ 150 (339)
T cd06547 90 PVADKLVEVAKYYGFDGWLINIETELG-D--AEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSM 150 (339)
T ss_pred HHHHHHHHHHHHhCCCceEeeeeccCC-c--HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC
Confidence 456778889998865554444444431 1 125789999999999999999999888887765
No 136
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=26.65 E-value=2.6e+02 Score=21.32 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=26.6
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
||.-...+|.++ ||-||.. ++|......+.+ ++...++.+...+++-|+
T Consensus 138 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~~-~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 138 LARLWLSRAPLW---ILDEPTT-ALDKAGVALLAG-LLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred HHHHHhcCCCEE---EEeCCCc-CCCHHHHHHHHH-HHHHHHhCCCEEEEEEcc
Confidence 455555567755 8899986 777665554443 333334433333333344
No 137
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=26.60 E-value=2.3e+02 Score=22.89 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=18.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-....|.++ |+.||.. ++|...-..+++.
T Consensus 154 laral~~~p~ll---llDEPt~-gLD~~~~~~l~~~ 185 (265)
T PRK10253 154 IAMVLAQETAIM---LLDEPTT-WLDISHQIDLLEL 185 (265)
T ss_pred HHHHHhcCCCEE---EEeCccc-cCCHHHHHHHHHH
Confidence 334444467655 7899986 6775554444433
No 138
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=26.55 E-value=2.7e+02 Score=21.93 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVR 53 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR 53 (202)
||.-...+|.|+ ||-||.. ++|...-..++ +.++.++
T Consensus 156 la~al~~~p~ll---lLDEPt~-~LD~~~~~~l~-~~l~~~~ 192 (233)
T PRK11629 156 IARALVNNPRLV---LADEPTG-NLDARNADSIF-QLLGELN 192 (233)
T ss_pred HHHHHhcCCCEE---EEeCCCC-CCCHHHHHHHH-HHHHHHH
Confidence 344444566655 7889986 67765544444 3333443
No 139
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.42 E-value=2.3e+02 Score=23.35 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=19.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.++ ||-||.. ++|...-..+.+-
T Consensus 155 iAraL~~~P~ll---llDEPt~-gLD~~~~~~l~~~ 186 (287)
T PRK13637 155 IAGVVAMEPKIL---ILDEPTA-GLDPKGRDEILNK 186 (287)
T ss_pred HHHHHHcCCCEE---EEECCcc-CCCHHHHHHHHHH
Confidence 344444566655 7889986 6776555444433
No 140
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=26.18 E-value=2.5e+02 Score=22.18 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=16.3
Q ss_pred CCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 17 ASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 17 ~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
..+|.++ ||.||.. ++|...-..+++
T Consensus 160 ~~~p~ll---llDEPt~-~LD~~~~~~l~~ 185 (243)
T TIGR01978 160 LLEPKLA---ILDEIDS-GLDIDALKIVAE 185 (243)
T ss_pred hcCCCEE---EecCCcc-cCCHHHHHHHHH
Confidence 3345544 7889986 677665555553
No 141
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=26.11 E-value=2.8e+02 Score=21.30 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ ||.||.. ++|......+++ .+..+++
T Consensus 136 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~-~l~~~~~ 173 (201)
T cd03231 136 LARLLLSGRPLW---ILDEPTT-ALDKAGVARFAE-AMAGHCA 173 (201)
T ss_pred HHHHHhcCCCEE---EEeCCCC-CCCHHHHHHHHH-HHHHHHh
Confidence 444445567655 7899986 777665555544 3333433
No 142
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=25.94 E-value=2.9e+02 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=18.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.++ ||-||.. ++|......+.+
T Consensus 157 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~~ 187 (228)
T PRK10584 157 LARAFNGRPDVL---FADEPTG-NLDRQTGDKIAD 187 (228)
T ss_pred HHHHHhcCCCEE---EEeCCCC-CCCHHHHHHHHH
Confidence 333344456655 7889986 677555444443
No 143
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.86 E-value=1.8e+02 Score=23.70 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=30.9
Q ss_pred EEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 25 VELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 25 ~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
|=||-||.. .++...-.+..+-.-+++++.+....|++||-
T Consensus 156 yvlLDEPLN-NLDmkHsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 156 YVLLDEPLN-NLDMKHSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred EEEecCccc-ccchHHHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 668999985 55655555666667777888899999999993
No 144
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.82 E-value=1.5e+02 Score=21.47 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 19 CPSLYAVEL-INEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 19 ~~~v~g~el-lNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
.|.++.+.+ .|+... +.+.....+=|++.++.||+..|+..|++..
T Consensus 40 ~pd~vvi~~G~ND~~~-~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 40 KPDVVLLHLGTNDLVL-NRDPDTAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred CCCEEEEeccCccccc-CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 344443432 566643 3456677788889999999999988877643
No 145
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=25.74 E-value=2.9e+02 Score=20.79 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=23.7
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
.||.-...+|.|+ ||-||.. ++|...-..+.+ .+..+++
T Consensus 114 ~la~al~~~p~ll---llDEP~~-~LD~~~~~~l~~-~l~~~~~ 152 (182)
T cd03215 114 VLARWLARDPRVL---ILDEPTR-GVDVGAKAEIYR-LIRELAD 152 (182)
T ss_pred HHHHHHccCCCEE---EECCCCc-CCCHHHHHHHHH-HHHHHHH
Confidence 3555556677766 7899986 777665555554 3333443
No 146
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.63 E-value=2.7e+02 Score=21.35 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVM 63 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii 63 (202)
||.-+..+|.++ ++.||.. ++|......+.+. ++.+++.+ ..+|++
T Consensus 138 laral~~~p~~l---ilDEP~~-~LD~~~~~~l~~~-l~~~~~~~-~tiii~ 183 (200)
T PRK13540 138 LLRLWMSKAKLW---LLDEPLV-ALDELSLLTIITK-IQEHRAKG-GAVLLT 183 (200)
T ss_pred HHHHHhcCCCEE---EEeCCCc-ccCHHHHHHHHHH-HHHHHHcC-CEEEEE
Confidence 455555567655 7899986 6775555544433 33344333 334444
No 147
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=25.56 E-value=2.8e+02 Score=21.23 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
|.-....|.++ ||.||.. ++|......+.+-
T Consensus 146 aral~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 176 (206)
T TIGR03608 146 ARAILKDPPLI---LADEPTG-SLDPKNRDEVLDL 176 (206)
T ss_pred HHHHHcCCCEE---EEeCCcC-CCCHHHHHHHHHH
Confidence 33334456655 7899986 6776655555443
No 148
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=25.42 E-value=2.5e+02 Score=24.08 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDA 51 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~ 51 (202)
||.-...+|.++ ||-||.. ++|...-..+++...+.
T Consensus 142 lAraL~~~p~ll---lLDEPts-~LD~~~~~~l~~~L~~l 177 (354)
T TIGR02142 142 IGRALLSSPRLL---LMDEPLA-ALDDPRKYEILPYLERL 177 (354)
T ss_pred HHHHHHcCCCEE---EEcCCCc-CCCHHHHHHHHHHHHHH
Confidence 333344456655 8899986 77765555555444333
No 149
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.28 E-value=2.7e+02 Score=22.10 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=22.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-....|.++ ||-||.. ++|......++ +.+..+++
T Consensus 142 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~-~~l~~~~~ 179 (241)
T PRK14250 142 IARTLANNPEVL---LLDEPTS-ALDPTSTEIIE-ELIVKLKN 179 (241)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHH-HHHHHHHH
Confidence 444445567655 7899986 67765444444 44444444
No 150
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=25.15 E-value=2.6e+02 Score=23.95 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=19.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.++ ||-||.. ++|...-..+.+.
T Consensus 139 laraL~~~p~ll---LLDEPts-~LD~~~~~~l~~~ 170 (352)
T PRK11144 139 IGRALLTAPELL---LMDEPLA-SLDLPRKRELLPY 170 (352)
T ss_pred HHHHHHcCCCEE---EEcCCcc-cCCHHHHHHHHHH
Confidence 444445567655 8899986 6776544444433
No 151
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=24.83 E-value=2.7e+02 Score=22.60 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSR 66 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~ 66 (202)
||+-...+|.++ |.=||.+ .+|...=+...+-..+..++.+...+|+=||.
T Consensus 153 IARAL~~~P~ii---lADEPTg-nLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 153 IARALINNPKII---LADEPTG-NLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHhcCCCeE---EeeCccc-cCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 444445567655 7788986 56655444444333333344343444444664
No 152
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=24.80 E-value=2.5e+02 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-...+|.++ |+.||.. ++|...-....
T Consensus 151 IARAL~~~P~iL---LlDEPts-~LD~~t~~~i~ 180 (343)
T TIGR02314 151 IARALASNPKVL---LCDEATS-ALDPATTQSIL 180 (343)
T ss_pred HHHHHHhCCCEE---EEeCCcc-cCCHHHHHHHH
Confidence 344444567655 8899986 67755444444
No 153
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=24.74 E-value=2.8e+02 Score=22.42 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=18.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.++ ||-||.. ++|...-..+++.
T Consensus 161 laral~~~p~il---lLDEPt~-~LD~~~~~~l~~~ 192 (265)
T TIGR02769 161 IARALAVKPKLI---VLDEAVS-NLDMVLQAVILEL 192 (265)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHH
Confidence 444444566655 7889986 6765544444433
No 154
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.71 E-value=2.8e+02 Score=20.20 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=21.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
|+......|.++ ++.||.. ++|......+++ .+..+++
T Consensus 91 l~~~l~~~~~i~---ilDEp~~-~lD~~~~~~l~~-~l~~~~~ 128 (157)
T cd00267 91 LARALLLNPDLL---LLDEPTS-GLDPASRERLLE-LLRELAE 128 (157)
T ss_pred HHHHHhcCCCEE---EEeCCCc-CCCHHHHHHHHH-HHHHHHH
Confidence 444444456544 7899986 677655444443 3333343
No 155
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.59 E-value=2.4e+02 Score=23.24 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=17.8
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
|.-...+|.|+ ||-||.. ++|...-..+++
T Consensus 162 aral~~~p~lL---lLDEPt~-~LD~~~~~~l~~ 191 (289)
T PRK13645 162 AGIIAMDGNTL---VLDEPTG-GLDPKGEEDFIN 191 (289)
T ss_pred HHHHHhCCCEE---EEeCCcc-cCCHHHHHHHHH
Confidence 33334456655 7899986 677655544443
No 156
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=24.51 E-value=2.5e+02 Score=24.34 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=22.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ ||-||.. ++|... +.-..+.++.+++
T Consensus 148 LARAL~~~P~ll---LLDEP~s-~LD~~~-r~~l~~~l~~l~~ 185 (362)
T TIGR03258 148 IARAIAIEPDVL---LLDEPLS-ALDANI-RANMREEIAALHE 185 (362)
T ss_pred HHHHHhcCCCEE---EEcCccc-cCCHHH-HHHHHHHHHHHHH
Confidence 444445567766 8999986 677544 3333344444444
No 157
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=24.47 E-value=2.9e+02 Score=22.01 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=19.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYD 50 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~ 50 (202)
||.-...+|.|+ ||-||.. ++|...-..+++-.-+
T Consensus 159 laral~~~p~vl---llDEP~~-~LD~~~~~~l~~~l~~ 193 (253)
T TIGR02323 159 IARNLVTRPRLV---FMDEPTG-GLDVSVQARLLDLLRG 193 (253)
T ss_pred HHHHHhcCCCEE---EEcCCCc-cCCHHHHHHHHHHHHH
Confidence 333344456655 7889986 6765555555444333
No 158
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=24.44 E-value=2.8e+02 Score=22.04 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
|.-...+|.|+ ||-||.. ++|...-..+++
T Consensus 156 a~al~~~p~ll---lLDEPt~-~LD~~~~~~l~~ 185 (250)
T PRK11264 156 ARALAMRPEVI---LFDEPTS-ALDPELVGEVLN 185 (250)
T ss_pred HHHHhcCCCEE---EEeCCCc-cCCHHHHHHHHH
Confidence 33344456655 7889986 677655555554
No 159
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=24.15 E-value=2.8e+02 Score=21.30 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=22.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ ||-||.. ++|......+++ .+..+++
T Consensus 137 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~~-~l~~~~~ 174 (208)
T cd03268 137 IALALLGNPDLL---ILDEPTN-GLDPDGIKELRE-LILSLRD 174 (208)
T ss_pred HHHHHhcCCCEE---EECCCcc-cCCHHHHHHHHH-HHHHHHH
Confidence 344444567655 8999986 777666666654 3334444
No 160
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=23.89 E-value=2.3e+02 Score=18.89 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=27.1
Q ss_pred CceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 043245 20 PSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPT 58 (202)
Q Consensus 20 ~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~ 58 (202)
..|+-+|+|+... .++.+.+.+...+..++|++.-|.
T Consensus 40 ~Gvi~~e~L~~~~--TIts~~Y~~ql~~l~~~l~~krp~ 76 (81)
T PF01359_consen 40 KGVIHYELLPPGK--TITSEYYCQQLDKLKQALREKRPE 76 (81)
T ss_dssp TEEEEEEEESTT-----SHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCcEeeeeCCCCc--cccHHHHHHHHHHHHHHHHHhChH
Confidence 4578899999654 477888878888888999886654
No 161
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=23.62 E-value=1.8e+02 Score=23.36 Aligned_cols=26 Identities=19% Similarity=0.047 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCCceeEEEeecC
Q 043245 5 SFQILTTCNFRYASCPSLYAVELINE 30 (202)
Q Consensus 5 t~~~~~~ia~~y~~~~~v~g~ellNE 30 (202)
..+.++.+++.-++....+++|.+|.
T Consensus 122 ~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 122 LVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 34555555555555556666666664
No 162
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=23.61 E-value=3.1e+02 Score=21.23 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
||.-...+|.++ ||-||.. ++|...-..+++..
T Consensus 147 laral~~~p~il---llDEPt~-~LD~~~~~~l~~~l 179 (218)
T cd03266 147 IARALVHDPPVL---LLDEPTT-GLDVMATRALREFI 179 (218)
T ss_pred HHHHHhcCCCEE---EEcCCCc-CCCHHHHHHHHHHH
Confidence 344444456655 7899986 77766555555433
No 163
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=23.59 E-value=1.4e+02 Score=20.36 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCceeEEEeecCCCCCC-CChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 043245 7 QILTTCNFRYASCPSLYAVELINEPLSPG-VSLERLNKYYKAGYDAVRNHSPTAYVVMSSRIE 68 (202)
Q Consensus 7 ~~~~~ia~~y~~~~~v~g~ellNEP~~~~-~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~ 68 (202)
..+...+++... .|++++| |.... .+...+..|...++..+..-| . |++-++|+
T Consensus 16 ~~f~~~a~~L~~----~G~~vvn-Pa~~~~~~~~~~~~ym~~~l~~L~~cD--~-i~~l~gWe 70 (92)
T PF14359_consen 16 PAFNAAAKRLRA----KGYEVVN-PAELGIPEGLSWEEYMRICLAMLSDCD--A-IYMLPGWE 70 (92)
T ss_pred HHHHHHHHHHHH----CCCEEeC-chhhCCCCCCCHHHHHHHHHHHHHhCC--E-EEEcCCcc
Confidence 344455555543 3466676 55321 122357889999999998554 4 44557786
No 164
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.58 E-value=2.8e+02 Score=22.78 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=18.8
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-....|.++ ||-||.. ++|...-..+.+
T Consensus 151 laral~~~p~ll---lLDEPt~-gLD~~~~~~l~~ 181 (279)
T PRK13635 151 IAGVLALQPDII---ILDEATS-MLDPRGRREVLE 181 (279)
T ss_pred HHHHHHcCCCEE---EEeCCcc-cCCHHHHHHHHH
Confidence 334444567655 8899986 777655444443
No 165
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.53 E-value=2.8e+02 Score=22.80 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=20.3
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
||.-....|.++ ||.||.. ++|...-..+.+..
T Consensus 154 laral~~~P~ll---llDEPt~-gLD~~~~~~l~~~l 186 (282)
T PRK13640 154 IAGILAVEPKII---ILDESTS-MLDPAGKEQILKLI 186 (282)
T ss_pred HHHHHHcCCCEE---EEECCcc-cCCHHHHHHHHHHH
Confidence 444444567655 7899986 77765555554433
No 166
>TIGR03272 methan_mark_6 putative methanogenesis marker protein 6. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.51 E-value=1e+02 Score=22.73 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCCCCC
Q 043245 43 KYYKAGYDAVRNHSPTAYVVMSSRIEPIDP 72 (202)
Q Consensus 43 ~~y~~a~~~IR~~~~~~~iii~d~~~~~~~ 72 (202)
+--.++++.||+.+|+++++=.-||-++|+
T Consensus 41 e~V~~~v~~iR~ld~~~IF~KdRGfp~gD~ 70 (132)
T TIGR03272 41 EEVMKVAERIRELDPNHIFVKDRGFPPGDP 70 (132)
T ss_pred HHHHHHHHHHHhhCCCceEeecCCCCCCch
Confidence 345678899999999998766666765333
No 167
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.44 E-value=3.2e+02 Score=21.02 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=18.5
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
|.-...+|.++ +|-||.. ++|...-..+++-
T Consensus 149 a~al~~~p~ll---lLDEPt~-~LD~~~~~~l~~~ 179 (214)
T TIGR02673 149 ARAIVNSPPLL---LADEPTG-NLDPDLSERILDL 179 (214)
T ss_pred HHHHhCCCCEE---EEeCCcc-cCCHHHHHHHHHH
Confidence 33344456655 7899986 6776555544433
No 168
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=23.42 E-value=2.6e+02 Score=24.17 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=19.4
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
||.-...+|.++ ||-||.. ++|...-..+.+..
T Consensus 144 LAraL~~~P~lL---LLDEPts-~LD~~~~~~l~~~L 176 (369)
T PRK11000 144 IGRTLVAEPSVF---LLDEPLS-NLDAALRVQMRIEI 176 (369)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHHHH
Confidence 334444467655 8899986 67755444444433
No 169
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.42 E-value=3e+02 Score=20.08 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=19.9
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 043245 28 INEPLSPGVSLERLNKYYKAGYDAVRNHSPT 58 (202)
Q Consensus 28 lNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~ 58 (202)
.|+... ..+.+...+-+++.++.+|+.++.
T Consensus 74 ~ND~~~-~~~~~~~~~~l~~li~~~~~~~~~ 103 (177)
T cd01822 74 GNDGLR-GIPPDQTRANLRQMIETAQARGAP 103 (177)
T ss_pred Cccccc-CCCHHHHHHHHHHHHHHHHHCCCe
Confidence 666543 345666777778888888887543
No 170
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.38 E-value=2.9e+02 Score=22.53 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-....|.|+ |+.||.. ++|...-..+++-
T Consensus 148 laraL~~~p~ll---ilDEPt~-gLD~~~~~~l~~~ 179 (277)
T PRK13652 148 IAGVIAMEPQVL---VLDEPTA-GLDPQGVKELIDF 179 (277)
T ss_pred HHHHHHcCCCEE---EEeCCcc-cCCHHHHHHHHHH
Confidence 444444567655 7899986 6776555554433
No 171
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=23.34 E-value=3.2e+02 Score=20.38 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=22.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ ||-||.. ++|......+.+ .+..+++
T Consensus 107 la~al~~~p~~l---llDEPt~-~LD~~~~~~l~~-~l~~~~~ 144 (173)
T cd03246 107 LARALYGNPRIL---VLDEPNS-HLDVEGERALNQ-AIAALKA 144 (173)
T ss_pred HHHHHhcCCCEE---EEECCcc-ccCHHHHHHHHH-HHHHHHh
Confidence 444445567665 8899986 677655555544 3344444
No 172
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.27 E-value=1.1e+02 Score=23.93 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=25.6
Q ss_pred ceeEEEe-ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 043245 21 SLYAVEL-INEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRI 67 (202)
Q Consensus 21 ~v~g~el-lNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~ 67 (202)
.++-+++ .| + +...+.+=....++.||+..|++||++-..+
T Consensus 61 ~~~~ld~~~N-~-----~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 61 DLIVLDCGPN-M-----SPEEFRERLDGFVKTIREAHPDTPILLVSPI 102 (178)
T ss_dssp SEEEEEESHH-C-----CTTTHHHHHHHHHHHHHTT-SSS-EEEEE--
T ss_pred CEEEEEeecC-C-----CHHHHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 4555554 35 2 3456677777789999999999998775433
No 173
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=23.26 E-value=3.2e+02 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=17.1
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 16 YASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 16 y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
....|.++ ||-||.. ++|...-..+++.
T Consensus 143 l~~~p~ll---lLDEPt~-~LD~~~~~~l~~~ 170 (255)
T PRK11248 143 LAANPQLL---LLDEPFG-ALDAFTREQMQTL 170 (255)
T ss_pred HhcCCCEE---EEeCCCc-cCCHHHHHHHHHH
Confidence 33456655 7889986 6776555554443
No 174
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.19 E-value=85 Score=15.83 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhCC
Q 043245 2 LMKSFQILTTCNFRYAS 18 (202)
Q Consensus 2 ~~~t~~~~~~ia~~y~~ 18 (202)
.+.+++.++.+.++|-+
T Consensus 16 ~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 16 YDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 46788888888888754
No 175
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=22.93 E-value=2.7e+02 Score=23.61 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=24.2
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 16 YASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 16 y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
...+|.|+ |+.||.. ++|...-....+-..+..++.+-.++++-||
T Consensus 168 L~~~P~ll---ilDEPts-~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 168 IACRPKLL---IADEPTT-ALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred HHhCCCEE---EEeCCCC-CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34457655 7899986 6776555544443333333333333333355
No 176
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=22.93 E-value=3.3e+02 Score=21.35 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=17.3
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 16 YASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 16 y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
...+|.++ ||-||.. ++|...-..+++.
T Consensus 158 l~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 185 (236)
T cd03219 158 LATDPKLL---LLDEPAA-GLNPEETEELAEL 185 (236)
T ss_pred HhcCCCEE---EEcCCcc-cCCHHHHHHHHHH
Confidence 33456655 7889986 6776655555543
No 177
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.78 E-value=3.3e+02 Score=21.16 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=22.8
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHS 56 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~ 56 (202)
||.-+..+|.++ ||.||.. ++|...-..+.+ .+..+++.+
T Consensus 148 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~-~l~~~~~~~ 187 (214)
T PRK13543 148 LARLWLSPAPLW---LLDEPYA-NLDLEGITLVNR-MISAHLRGG 187 (214)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHH-HHHHHHhCC
Confidence 444445567655 7899986 677655554444 343334433
No 178
>KOG4115 consensus Dynein-associated protein Roadblock [Cell cycle control, cell division, chromosome partitioning; Cell motility]
Probab=22.77 E-value=2.8e+02 Score=19.41 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCceeEEEeecCCCC-C---CCC-------hHHHHHHHHHHHHHHHhcCCC
Q 043245 7 QILTTCNFRYASCPSLYAVELINEPLS-P---GVS-------LERLNKYYKAGYDAVRNHSPT 58 (202)
Q Consensus 7 ~~~~~ia~~y~~~~~v~g~ellNEP~~-~---~~~-------~~~l~~~y~~a~~~IR~~~~~ 58 (202)
..++...+|+...|.|.||=++|- .+ + .++ ...|..+-..|-..||..+|.
T Consensus 3 ~~vEe~~~R~qs~~gV~giiv~d~-~GvpikTt~d~~~t~~ya~~l~~L~~kars~VrdlDps 64 (97)
T KOG4115|consen 3 AEVEETLKRLQSYKGVTGIIVVDN-AGVPIKTTLDNTTTQQYAALLHPLVEKARSVVRDLDPS 64 (97)
T ss_pred HHHHHHHHHHhccCCceeEEEECC-CCcEeEeccCchHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 456777888888899999999984 43 1 122 345566667788889999874
No 179
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.66 E-value=3.5e+02 Score=20.77 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=22.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ ++-||.. ++|......++ +.++.+++
T Consensus 140 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~-~~l~~~~~ 177 (204)
T PRK13538 140 LARLWLTRAPLW---ILDEPFT-AIDKQGVARLE-ALLAQHAE 177 (204)
T ss_pred HHHHHhcCCCEE---EEeCCCc-cCCHHHHHHHH-HHHHHHHH
Confidence 444445567655 7889986 67766555554 44444444
No 180
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=22.42 E-value=3.5e+02 Score=20.89 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=16.8
Q ss_pred CCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 17 ASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 17 ~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
..+|.++ |+-||.. ++|...-..+++.
T Consensus 148 ~~~p~ll---llDEPt~-~LD~~~~~~l~~~ 174 (222)
T cd03224 148 MSRPKLL---LLDEPSE-GLAPKIVEEIFEA 174 (222)
T ss_pred hcCCCEE---EECCCcc-cCCHHHHHHHHHH
Confidence 3456555 7899986 6776555555443
No 181
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.41 E-value=3.4e+02 Score=20.82 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.++ ||-||.. ++|...-..+.+ .++.+++
T Consensus 137 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~-~l~~~~~ 174 (205)
T cd03226 137 IAAALLSGKDLL---IFDEPTS-GLDYKNMERVGE-LIRELAA 174 (205)
T ss_pred HHHHHHhCCCEE---EEeCCCc-cCCHHHHHHHHH-HHHHHHH
Confidence 333344467655 8899986 777655555443 4444443
No 182
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=22.34 E-value=2.3e+02 Score=24.25 Aligned_cols=57 Identities=7% Similarity=-0.005 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEE
Q 043245 5 SFQILTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVM 63 (202)
Q Consensus 5 t~~~~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii 63 (202)
.++.++.+.+ .+-++|+-|.+..+-...+.....-....++++++|++.-|+..||-
T Consensus 53 l~~~~~~~~~--~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~ 109 (314)
T cd00384 53 LVEEAEELAD--LGIRAVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVIT 109 (314)
T ss_pred HHHHHHHHHH--CCCCEEEEECCCCCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEE
Confidence 3333444333 46678887877433111122222334678999999999999877644
No 183
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.25 E-value=3.4e+02 Score=20.82 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=16.4
Q ss_pred hCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 16 YASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 16 y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
...+|.++ ||-||.. ++|...-..+++
T Consensus 149 l~~~p~ll---llDEPt~-~LD~~~~~~~~~ 175 (211)
T cd03225 149 LAMDPDIL---LLDEPTA-GLDPAGRRELLE 175 (211)
T ss_pred HhcCCCEE---EEcCCcc-cCCHHHHHHHHH
Confidence 34456655 7889986 677554444443
No 184
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=22.08 E-value=3.4e+02 Score=21.99 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=19.6
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
|.-...+|.++ ||-||.. ++|...-..+++..-
T Consensus 145 araL~~~p~ll---lLDEPt~-~LD~~~~~~l~~~L~ 177 (257)
T PRK11247 145 ARALIHRPGLL---LLDEPLG-ALDALTRIEMQDLIE 177 (257)
T ss_pred HHHHhcCCCEE---EEeCCCC-CCCHHHHHHHHHHHH
Confidence 33334456655 7889986 777665555554333
No 185
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.01 E-value=3.1e+02 Score=22.41 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=22.5
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-....|.|+ ||.||.. ++|...-..+++. ++.+++
T Consensus 147 laral~~~p~ll---lLDEPt~-gLD~~~~~~l~~~-l~~l~~ 184 (274)
T PRK13644 147 LAGILTMEPECL---IFDEVTS-MLDPDSGIAVLER-IKKLHE 184 (274)
T ss_pred HHHHHHcCCCEE---EEeCCcc-cCCHHHHHHHHHH-HHHHHh
Confidence 444445567655 8999986 6776555555443 334443
No 186
>PRK10908 cell division protein FtsE; Provisional
Probab=21.97 E-value=3.5e+02 Score=21.03 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-....|.++ ||-||.. ++|...-..+.+ .+..+++
T Consensus 148 laral~~~p~ll---llDEPt~-~LD~~~~~~l~~-~l~~~~~ 185 (222)
T PRK10908 148 IARAVVNKPAVL---LADEPTG-NLDDALSEGILR-LFEEFNR 185 (222)
T ss_pred HHHHHHcCCCEE---EEeCCCC-cCCHHHHHHHHH-HHHHHHH
Confidence 334444456655 7889986 677655555553 3444443
No 187
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.95 E-value=3.3e+02 Score=22.33 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=19.3
Q ss_pred HhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHH
Q 043245 15 RYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYD 50 (202)
Q Consensus 15 ~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~ 50 (202)
-...+|.++ ||-||.. ++|......+++-.-+
T Consensus 155 aL~~~p~lL---ilDEPt~-gLD~~~~~~l~~~l~~ 186 (283)
T PRK13636 155 VLVMEPKVL---VLDEPTA-GLDPMGVSEIMKLLVE 186 (283)
T ss_pred HHHcCCCEE---EEeCCcc-CCCHHHHHHHHHHHHH
Confidence 334456655 7899986 7776655555544433
No 188
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=21.92 E-value=3.2e+02 Score=23.22 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=25.0
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh-cCCCcEEEEcC
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN-HSPTAYVVMSS 65 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~-~~~~~~iii~d 65 (202)
|.-...+|.++ |+-||.. ++|...-....+ .++.+++ .+..++++-||
T Consensus 173 ArAL~~~P~ll---ilDEPts-~LD~~~~~~i~~-lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 173 ARALILEPKLI---ICDEPVS-ALDVSIQAQVVN-LLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred HHHHhcCCCEE---EEeCCCc-cCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCC
Confidence 33334456655 7899986 677554444443 4444443 23333443355
No 189
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=21.90 E-value=3.2e+02 Score=23.50 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-...+|.|+ ||-||.. ++|...-.... +.++.+.+
T Consensus 147 lArAL~~~P~ll---LLDEP~s-~LD~~~r~~l~-~~L~~l~~ 184 (353)
T PRK10851 147 LARALAVEPQIL---LLDEPFG-ALDAQVRKELR-RWLRQLHE 184 (353)
T ss_pred HHHHHhcCCCEE---EEeCCCc-cCCHHHHHHHH-HHHHHHHH
Confidence 333344467655 7899986 67754444433 44444443
No 190
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=21.89 E-value=3.7e+02 Score=20.61 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAG 48 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a 48 (202)
||.-....|.++ +|.||.. ++|......+.+..
T Consensus 115 laral~~~p~il---llDEPt~-~LD~~~~~~l~~~L 147 (200)
T cd03217 115 ILQLLLLEPDLA---ILDEPDS-GLDIDALRLVAEVI 147 (200)
T ss_pred HHHHHhcCCCEE---EEeCCCc-cCCHHHHHHHHHHH
Confidence 444455667755 7899986 67766555554433
No 191
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=21.76 E-value=3.3e+02 Score=22.07 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=18.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-...+|.|+ ||-||.. ++|......++
T Consensus 162 laral~~~p~ll---lLDEPt~-~LD~~~~~~~~ 191 (268)
T PRK10419 162 LARALAVEPKLL---ILDEAVS-NLDLVLQAGVI 191 (268)
T ss_pred HHHHHhcCCCEE---EEeCCCc-ccCHHHHHHHH
Confidence 344444467655 7899986 67765444444
No 192
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.75 E-value=3.1e+02 Score=22.22 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.++ ||-||.. ++|...-..+.+-
T Consensus 153 laral~~~p~ll---lLDEPt~-~LD~~~~~~l~~~ 184 (269)
T PRK13648 153 IAGVLALNPSVI---ILDEATS-MLDPDARQNLLDL 184 (269)
T ss_pred HHHHHHcCCCEE---EEeCCcc-cCCHHHHHHHHHH
Confidence 344444456655 8899986 7776655555543
No 193
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=21.66 E-value=3.3e+02 Score=21.28 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=19.2
Q ss_pred CCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 18 SCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 18 ~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
..|.++ ||-||.. ++|...-..+.+ .+..+++
T Consensus 160 ~~p~il---llDEP~~-gLD~~~~~~~~~-~l~~~~~ 191 (226)
T cd03234 160 WDPKVL---ILDEPTS-GLDSFTALNLVS-TLSQLAR 191 (226)
T ss_pred hCCCEE---EEeCCCc-CCCHHHHHHHHH-HHHHHHH
Confidence 346544 7899986 777666555554 3334443
No 194
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.60 E-value=3.4e+02 Score=20.08 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=20.6
Q ss_pred HHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 11 TCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 11 ~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
.||.-...+|.++ ++-||.. ++|...-..+++
T Consensus 92 ~laral~~~p~il---llDEP~~-~LD~~~~~~l~~ 123 (163)
T cd03216 92 EIARALARNARLL---ILDEPTA-ALTPAEVERLFK 123 (163)
T ss_pred HHHHHHhcCCCEE---EEECCCc-CCCHHHHHHHHH
Confidence 3555556677766 7899986 677655554443
No 195
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.41 E-value=3.8e+02 Score=20.65 Aligned_cols=31 Identities=10% Similarity=0.249 Sum_probs=19.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-+..+|.++ ++-||.. ++|......+.+
T Consensus 138 la~al~~~p~ll---llDEPt~-~LD~~~~~~l~~ 168 (207)
T PRK13539 138 LARLLVSNRPIW---ILDEPTA-ALDAAAVALFAE 168 (207)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHHH
Confidence 444455567655 7899986 677655555543
No 196
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.33 E-value=3.4e+02 Score=22.10 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=18.8
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKA 47 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~ 47 (202)
||.-...+|.++ +|.||.. ++|...-..+.+-
T Consensus 148 laral~~~p~ll---llDEPt~-gLD~~~~~~l~~~ 179 (275)
T PRK13639 148 IAGILAMKPEII---VLDEPTS-GLDPMGASQIMKL 179 (275)
T ss_pred HHHHHhcCCCEE---EEeCCCc-CCCHHHHHHHHHH
Confidence 334444456655 7899986 6775554444433
No 197
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=21.24 E-value=3.5e+02 Score=21.08 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGY 49 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~ 49 (202)
||.-...+|.++ |+.||.. ++|......+++-..
T Consensus 135 laral~~~p~ll---llDEP~~-~LD~~~~~~l~~~L~ 168 (223)
T TIGR03740 135 IAIALLNHPKLL---ILDEPTN-GLDPIGIQELRELIR 168 (223)
T ss_pred HHHHHhcCCCEE---EECCCcc-CCCHHHHHHHHHHHH
Confidence 344444567655 8999986 777665555544333
No 198
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=20.98 E-value=3.1e+02 Score=24.19 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-..++|.|+ ||-||.. ++|...-..+.
T Consensus 150 IArAL~~~P~iL---LLDEPts-gLD~~~~~~l~ 179 (402)
T PRK09536 150 LARALAQATPVL---LLDEPTA-SLDINHQVRTL 179 (402)
T ss_pred HHHHHHcCCCEE---EEECCcc-cCCHHHHHHHH
Confidence 444455677766 8899986 67755444443
No 199
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=20.97 E-value=3.8e+02 Score=20.91 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=20.7
Q ss_pred HHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 13 NFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 13 a~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
|.-...+|.|+ |+-||.. ++|...-..+++ .+..+++
T Consensus 143 a~al~~~p~il---llDEPt~-~LD~~~~~~l~~-~l~~~~~ 179 (230)
T TIGR03410 143 ARALVTRPKLL---LLDEPTE-GIQPSIIKDIGR-VIRRLRA 179 (230)
T ss_pred HHHHhcCCCEE---EecCCcc-cCCHHHHHHHHH-HHHHHHH
Confidence 33344456655 7889986 677655555543 3333443
No 200
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=20.89 E-value=1.7e+02 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Q 043245 38 LERLNKYYKAGYDAVRNHSPTAYVVMSSRIE 68 (202)
Q Consensus 38 ~~~l~~~y~~a~~~IR~~~~~~~iii~d~~~ 68 (202)
...+++.++++-+.+++..|+..|++++.+.
T Consensus 20 ~~~~~~a~~~~~~~l~~~~pd~ivvvg~h~~ 50 (256)
T cd07951 20 IAATRAACEAAARRLAAARPDTIVVVSPHAP 50 (256)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 4567788888888888888999999988764
No 201
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.87 E-value=3.2e+02 Score=21.73 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=18.9
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYK 46 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~ 46 (202)
||.-...+|.|+ ||-||.. ++|......+.+
T Consensus 153 laral~~~p~ll---lLDEP~~-~LD~~~~~~l~~ 183 (246)
T PRK14269 153 IARALAIKPKLL---LLDEPTS-ALDPISSGVIEE 183 (246)
T ss_pred HHHHHhcCCCEE---EEcCCcc-cCCHHHHHHHHH
Confidence 444444456655 7899986 677655555543
No 202
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=20.75 E-value=4.9e+02 Score=21.64 Aligned_cols=50 Identities=8% Similarity=0.194 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCC
Q 043245 9 LTTCNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSSRI 67 (202)
Q Consensus 9 ~~~ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d~~ 67 (202)
+..++.+|.+. .|+||+|++.|.. + +... +..+++..|+. +..+.+|-|-
T Consensus 153 ~~~~~~~~~~~-~vvG~dl~g~E~~-~-~~~~----~~~~~~~a~~~--gl~~t~HaGE 202 (331)
T PF00962_consen 153 IVELASKYPDK-GVVGFDLAGDEDG-G-PPLK----FAPAFRKAREA--GLKLTVHAGE 202 (331)
T ss_dssp HHHHHHHTTTT-TEEEEEEESSTTS-T-TGGG----HHHHHHHHHHT--T-EEEEEESS
T ss_pred HHHHHhhcccc-eEEEEEecCCccc-C-chHH----HHHHHhhhccc--ceeecceecc
Confidence 35566666643 7999999998875 2 2333 44444445654 4777777653
No 203
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=20.68 E-value=3.9e+02 Score=21.50 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHH
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYY 45 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y 45 (202)
||.-...+|.++ |+-||.. ++|...-..+.
T Consensus 126 iaraL~~~p~ll---llDEPt~-~LD~~~~~~l~ 155 (246)
T cd03237 126 IAACLSKDADIY---LLDEPSA-YLDVEQRLMAS 155 (246)
T ss_pred HHHHHhcCCCEE---EEeCCcc-cCCHHHHHHHH
Confidence 334444566655 7889986 67655444443
No 204
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=20.68 E-value=3.8e+02 Score=21.60 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=21.2
Q ss_pred HHHHhCCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHh
Q 043245 12 CNFRYASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRN 54 (202)
Q Consensus 12 ia~~y~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~ 54 (202)
||.-....|.|+ ||.||.. ++|...-..+. +.+..+++
T Consensus 131 laral~~~p~ll---lLDEPt~-~LD~~~~~~l~-~~L~~~~~ 168 (251)
T PRK09544 131 LARALLNRPQLL---VLDEPTQ-GVDVNGQVALY-DLIDQLRR 168 (251)
T ss_pred HHHHHhcCCCEE---EEeCCCc-CCCHHHHHHHH-HHHHHHHH
Confidence 333344456655 8999986 67765544444 33333433
No 205
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=20.67 E-value=3.6e+02 Score=22.87 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=23.6
Q ss_pred CCCCceeEEEeecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 17 ASCPSLYAVELINEPLSPGVSLERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 17 ~~~~~v~g~ellNEP~~~~~~~~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
..+|.++ ++-||.. ++|...-....+-..+..++.+..++++-||
T Consensus 170 ~~~P~lL---ilDEPts-~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 170 MLDPDVV---VADEPVS-ALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred HcCCCEE---EEECCCc-cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3356655 7889986 6775555544443333333334344444455
No 206
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.25 E-value=1.6e+02 Score=24.65 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEcC
Q 043245 39 ERLNKYYKAGYDAVRNHSPTAYVVMSS 65 (202)
Q Consensus 39 ~~l~~~y~~a~~~IR~~~~~~~iii~d 65 (202)
..+.+=|+++-+.|++..|+++|+|++
T Consensus 31 ~~v~~a~~~~~~~v~~~~PDvvVvis~ 57 (278)
T PRK13364 31 KPFFDGFPPVREWLEKVKPDVAVVFYN 57 (278)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 566777889999999999999999983
No 207
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=20.21 E-value=83 Score=24.66 Aligned_cols=42 Identities=29% Similarity=0.497 Sum_probs=28.3
Q ss_pred EeecCCCC-----CCCChHHHHHHHHHHHHHHHhcC-CCcEEEEcCCCC
Q 043245 26 ELINEPLS-----PGVSLERLNKYYKAGYDAVRNHS-PTAYVVMSSRIE 68 (202)
Q Consensus 26 ellNEP~~-----~~~~~~~l~~~y~~a~~~IR~~~-~~~~iii~d~~~ 68 (202)
+|||.|.- +.+..+...+|.++.+++|++.- |+..|-+.| |.
T Consensus 123 ~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp~~~IqfED-f~ 170 (182)
T PF00390_consen 123 ELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGPNALIQFED-FS 170 (182)
T ss_dssp HHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGCTSEEEE-S---
T ss_pred hhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCCCeEEEEec-CC
Confidence 36788864 23456788899999999999987 898888877 53
Done!