BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043247
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 33 LIEETCNKIFFLSEACVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIEKLEGE 92
LI E C K S C+ L SD RS + D+KGL + +D A A T ++I L +
Sbjct: 5 LISEICPKTRNPS-LCLQALESDPRS-ASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ 62
Query: 93 ATDPELKGYLSLCLCFYVGAAEDYFQKS--LKSLDTNSFLEAARLARYGA 140
ATDP+LKG C Y A + Q L S D NS A A GA
Sbjct: 63 ATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGA 112
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 149
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 32 DLIEETCNKIFFLSEACVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIEKLEG 91
+L+E TC + C+ L SD RS D+ LA IM+D AKA I KL
Sbjct: 4 NLVETTCKNTPNY-QLCLKTLLSDKRSATG-DITTLALIMVDAIKAKANQAAVTISKLRH 61
Query: 92 EATDPELKGYLSLCLCFY 109
KG L C Y
Sbjct: 62 SNPPAAWKGPLKNCAFSY 79
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 5.0)
pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 7.5)
pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (ph 9.0)
pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
Length = 150
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 32 DLIEETCNKIFFLSEACVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIEKLEG 91
+L+E TC + C+ L SD RS D+ LA IM+D AKA I KL
Sbjct: 5 NLVETTCKNTPNY-QLCLKTLLSDKRSATG-DITTLALIMVDAIKAKANQAAVTISKLRH 62
Query: 92 EATDPELKGYLSLCLCFY 109
KG L C Y
Sbjct: 63 SNPPAAWKGPLKNCAFSY 80
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
Length = 151
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 32 DLIEETCNKIFFLSEACVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIEKLEG 91
+L+E TC + C+ L SD RS D+ LA IM+D AKA I KL
Sbjct: 6 NLVETTCKNTPNY-QLCLKTLLSDKRSATG-DITTLALIMVDAIKAKANQAAVTISKLRH 63
Query: 92 EATDPELKGYLSLCLCFY 109
KG L C Y
Sbjct: 64 SNPPAAWKGPLKNCAFSY 81
>pdb|3GUY|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|C Chain C, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|D Chain D, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|E Chain E, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|F Chain F, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|G Chain G, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|H Chain H, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
Length = 230
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 92 EATDPELKGYLSLCLCFYVGA-AEDYFQKSLKSLDTNSFLEA--ARLARYGA 140
E+ ELKG + Y G A ++++ S KSLDT+SF+ A A L +GA
Sbjct: 155 ESVRLELKGKPMKIIAVYPGGMATEFWETSGKSLDTSSFMSAEDAALMIHGA 206
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 48 CVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLC 107
C+ FL + + + +++ LA+ LD T A+A T++ ++ + DP K C+
Sbjct: 21 CLKFLNT---KFASPNLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVD 77
Query: 108 FY---VGAAEDYFQ 118
Y +G E+ F+
Sbjct: 78 EYESAIGNLEEAFE 91
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 48 CVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLC 107
C+ FL + + + +++ LA+ LD T A+A T++ ++ + DP K C+
Sbjct: 21 CLKFLNT---KFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVD 77
Query: 108 FY---VGAAEDYFQK 119
Y +G E+ F+
Sbjct: 78 EYESAIGNLEEAFEH 92
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 48 CVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLC 107
C+ FL + + + +++ LA+ LD T A+A T++ ++ + DP K C+
Sbjct: 20 CLKFLNT---KFASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVD 76
Query: 108 FY---VGAAEDYFQ 118
Y +G E+ F+
Sbjct: 77 EYESAIGNLEEAFE 90
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 63 DVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAEDY------ 116
D+ G +I LD+ ++KA+D I KL EAT + K + F+ G +Y
Sbjct: 30 DINGNGKITLDEIVSKASDDI--CAKL--EATPEQTKRHQVCVEAFFRGCGMEYGKEIAF 85
Query: 117 --FQKSLKSLDTNSFLEAAR 134
F K L T+ + AR
Sbjct: 86 PQFLDGFKQLATSELKKWAR 105
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 63 DVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAEDY------ 116
D+ G +I LD+ ++KA+D I KL EAT + K + F+ G +Y
Sbjct: 30 DINGNGKITLDEIVSKASDDI--CAKL--EATPEQTKRHQVCVEAFFRGCGMEYGKEIAF 85
Query: 117 --FQKSLKSLDTNSFLEAAR 134
F K L T+ + AR
Sbjct: 86 PQFLDGWKQLATSELKKWAR 105
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 63 DVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAEDY------ 116
D+ G +I LD+ ++KA+D I KL EAT + K + F+ G +Y
Sbjct: 30 DINGNGKITLDEIVSKASDDI--CAKL--EATPEQTKRHQVCVEAFFRGCGMEYGKEIAF 85
Query: 117 --FQKSLKSLDTNSFLEAAR 134
F K L T+ + AR
Sbjct: 86 PQFLDGWKQLATSELKKWAR 105
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 63 DVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAEDY------ 116
D+ G +I LD+ ++KA+D I KL EAT + K + F+ G +Y
Sbjct: 30 DINGNGKITLDEIVSKASDDI--CAKL--EATPEQTKRHQVCVEAFFRGCGMEYGKEIAF 85
Query: 117 --FQKSLKSLDTNSFLEAAR 134
F K L T+ + AR
Sbjct: 86 PQFLDGWKQLATSELKKWAR 105
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 63 DVKGLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAEDY------ 116
D+ G +I LD+ ++KA+D I KL EAT + K + F+ G +Y
Sbjct: 30 DINGNGKITLDEIVSKASDDI--CAKL--EATPEQTKRHQVCVEAFFRGCGMEYGKEIAF 85
Query: 117 --FQKSLKSLDTNSFLEAAR 134
F K L T+ + AR
Sbjct: 86 PQFLDGWKQLATSELKKWAR 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,529,446
Number of Sequences: 62578
Number of extensions: 155271
Number of successful extensions: 429
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 16
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)