BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043247
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P83326|PMEI_ACTDE Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2
Length = 185
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 16 IIFVSCANQNYTL-VQADLIEETCNKIFFLSEACVIFLRSDGRSYRANDVKGLARIMLDK 74
I+F+S +Q ++ + LI E C K S C+ L SD RS + D+KGL + +D
Sbjct: 18 ILFISPLSQRPSVKAENHLISEICPKTRNPS-LCLQALESDPRS-ASKDLKGLGQFSIDI 75
Query: 75 TIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAEDYFQKS--LKSLDTNSFLEA 132
A A T ++I L +ATDP+LKG C Y A + Q L S D NS
Sbjct: 76 AQASAKQTSKIIASLTNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIY 135
Query: 133 ARLARYGA 140
A A GA
Sbjct: 136 ASAAFDGA 143
>sp|Q8GT41|PLA1_PLAAC Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1
Length = 179
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 14 LLIIFVSCANQNYTLVQADLIEETCNKIFFLS-----EACVIFLRSDGRSYRANDVKGLA 68
L I F + ++ AD+++ TC K+ S + CV L +D +S+ A D++GL
Sbjct: 7 LCIFFFNLLLLLQAVISADIVQGTCKKVAQRSPNVNYDFCVKSLGADPKSHTA-DLQGLG 65
Query: 69 RIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGA 112
I + I + I ++ DP LK YL+ C+ Y A
Sbjct: 66 VISANLAIQHGSKIQTFIGRILKSKVDPALKKYLNDCVGLYADA 109
>sp|F4HWQ8|CVIF1_ARATH Cell wall / vacuolar inhibitor of fructosidase 1 OS=Arabidopsis
thaliana GN=C/VIF1 PE=1 SV=1
Length = 205
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 30 QADLIEETCNKI--FFLSEACVIFLRSDGRSYRANDVKGLARIMLDKTIAKAADTIRLIE 87
+ +IE TC + F L CV L SD R A D GLA I++DK A T+ I
Sbjct: 22 EGSIIEPTCKETPDFNL---CVSLLNSDPRGSSA-DTSGLALILIDKIKGLATKTLNEIN 77
Query: 88 KLEGEATDPELKGYLSLCLCFYVGAAEDYFQKSLKSLDTNSFLEA-----ARLARYGAKK 142
L + PELK L C Y K++ + D +EA + G
Sbjct: 78 GLYKKR--PELKRALDECSRRY---------KTILNADVPEAIEAISKGVPKFGEDGVID 126
Query: 143 AQNFASL---GFDSSSTVWKKSKDLENLGFVTQGV 174
A AS+ GF+ SS + +K ++ + VT+ +
Sbjct: 127 AGVEASVCQGGFNGSSPLTSLTKSMQKISNVTRAI 161
>sp|O49603|CVIF2_ARATH Cell wall / vacuolar inhibitor of fructosidase 2 OS=Arabidopsis
thaliana GN=C/VIF2 PE=1 SV=1
Length = 180
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 12 IYLLIIFVSCANQNYTLVQAD-----LIEETCNKIFFLSEACVIFLRSDGRSYRANDVKG 66
I+LL++ ++ + TL+ A +IE TC + + CV L+SD RS A D KG
Sbjct: 6 IFLLLVTLTFSAS--TLISAKSNTTTIIESTCKTTNYY-KFCVSALKSDPRSPTA-DTKG 61
Query: 67 LARIMLDKTIAKAADTIRLIE-KLEGEATDPELKGYLSLCLCFYVGAAEDYFQKSLKSLD 125
LA IM+ + A T I L D LK L C Y AA D + +++ LD
Sbjct: 62 LASIMVGVGMTNATSTANYIAGNLSATVKDTVLKKVLQDCSEKYALAA-DSLRLTIQDLD 120
Query: 126 TNSF 129
++
Sbjct: 121 DEAY 124
>sp|A6X0E9|SYA_OCHA4 Alanine--tRNA ligase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=alaS PE=3 SV=1
Length = 885
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 69 RIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAEDYFQKSLKSLDTNS 128
R LD+ + +D + +EG+ D E L F + +D ++ ++DT+
Sbjct: 360 RKTLDRGLGLLSDATESL--VEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIAVDTDG 417
Query: 129 FLEAARLARYGAKKAQNFASLGFDSSSTVWKKSKD----LENLGF---VTQGVIALL 178
F +A + R A+ N+A G ++ T+W KD E LG+ V +GVI L
Sbjct: 418 F--SAAMQRQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYETEVAEGVITAL 472
>sp|Q54GJ2|PUR2_DICDI Bifunctional purine biosynthetic protein purD OS=Dictyostelium
discoideum GN=purD PE=1 SV=1
Length = 815
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 60 RANDVKGLARIMLDKTIAKAADTIRLIEKLEGE 92
+ +++GL RIM+DK A D I + E L+GE
Sbjct: 165 KEEELEGLKRIMVDKEFGSAGDEIVIEEFLDGE 197
>sp|Q9HN45|PCNA_HALSA DNA polymerase sliding clamp OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=pcn PE=3 SV=1
Length = 247
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 28 LVQADLIEETCNKIFFLSEACVIFLRSDGRSYRANDVKGLARIMLD 73
+V AD ++ET + + L + C I L D S RA D + + LD
Sbjct: 5 IVSADTLQETLDSVSVLVDECKIHLDDDTLSIRAVDPASVGMVDLD 50
>sp|B0R7F7|PCNA_HALS3 DNA polymerase sliding clamp OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=pcn PE=3 SV=1
Length = 247
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 28 LVQADLIEETCNKIFFLSEACVIFLRSDGRSYRANDVKGLARIMLD 73
+V AD ++ET + + L + C I L D S RA D + + LD
Sbjct: 5 IVSADTLQETLDSVSVLVDECKIHLDDDTLSIRAVDPASVGMVDLD 50
>sp|C5DGE2|SHE2_LACTC SWI5-dependent HO expression protein 2 OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=SHE2
PE=3 SV=1
Length = 236
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 25 NYTLVQA---DLIEETCNKIFFLSEACVIFLRSDGRSY 59
NY L Q+ + I +T N+ +SE CV+FL S R Y
Sbjct: 105 NYYLTQSLKNETISKTLNRDLVVSEDCVVFLESTYRHY 142
>sp|A0LIS1|ISPF_SYNFM 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=ispF PE=3 SV=1
Length = 159
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%)
Query: 94 TDPELKGYLSLCLCFYVGAAEDYFQKSLKSLDTNSFLEAARLARYGAKKAQNFASLGFDS 153
TDP KG SL L + ++DT L+ RLA Y A+ A+
Sbjct: 64 TDPRFKGISSLLLLRQTVELVRRAGFRIANIDTTLVLQKPRLAPYIARMAEEIGRATDLP 123
Query: 154 SSTVWKKSKDLENLGF 169
S+V K+ E LGF
Sbjct: 124 VSSVNVKATTTEKLGF 139
>sp|O88759|KCNS3_RAT Potassium voltage-gated channel subfamily S member 3 OS=Rattus
norvegicus GN=Kcns3 PE=2 SV=1
Length = 491
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 26/113 (23%)
Query: 70 IMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVG----------AAEDYFQK 119
++L +A ++ + +GE DP L+G C+ ++ G + + +++
Sbjct: 194 VVLASIVAMCVHSMSEFQNEDGEVDDPVLEGVEIACIAWFTGELAIRLVAAPSQKKFWKN 253
Query: 120 SLKSLDTNSFLEAARLARYGAKKAQNFASLGFDSSSTVWKKSKDLENLGFVTQ 172
L +D S + +A+L D+ ++S+D+EN+G V Q
Sbjct: 254 PLNIIDFVSIIPF-------------YATLAVDTKE---EESEDIENMGKVVQ 290
>sp|Q8BQZ8|KCNS3_MOUSE Potassium voltage-gated channel subfamily S member 3 OS=Mus
musculus GN=Kcns3 PE=2 SV=1
Length = 491
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 26/113 (23%)
Query: 70 IMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVG----------AAEDYFQK 119
++L +A ++ + +GE DP L+G C+ ++ G + + +++
Sbjct: 194 VVLASIVAMCVHSMSEFQNEDGEVDDPVLEGVEIACIAWFTGELAIRLVAAPSQKKFWKN 253
Query: 120 SLKSLDTNSFLEAARLARYGAKKAQNFASLGFDSSSTVWKKSKDLENLGFVTQ 172
L +D S + +A+L D+ ++S+D+EN+G V Q
Sbjct: 254 PLNIIDFVSIIPF-------------YATLAVDTKE---EESEDIENMGKVVQ 290
>sp|A8Q3T2|ASNA_BRUMA ATPase ASNA1 homolog OS=Brugia malayi GN=Bm1_42140 PE=3 SV=1
Length = 344
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 66 GLARIMLDKTIAKAADTIRLIEKLEGEATDPELKGYLSLCLCFYVGAAE 114
GL I D T K +T+ ++ ++ + DP+L ++ +C+ ++ E
Sbjct: 194 GLGEISADDTTNKLRETLDVVRRINSQFKDPDLTTFVCVCIAEFLSLYE 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,438,098
Number of Sequences: 539616
Number of extensions: 1975466
Number of successful extensions: 4981
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4975
Number of HSP's gapped (non-prelim): 14
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)