Query 043249
Match_columns 287
No_of_seqs 215 out of 1999
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.3E-38 1.4E-42 305.0 25.3 259 15-286 10-286 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 1.2E-22 2.7E-27 177.2 13.4 124 160-285 1-125 (287)
3 PLN03210 Resistant to P. syrin 99.6 6.3E-15 1.4E-19 150.3 14.8 119 155-282 184-317 (1153)
4 PRK00411 cdc6 cell division co 99.2 4.1E-10 8.9E-15 102.7 14.1 117 154-271 29-149 (394)
5 TIGR02928 orc1/cdc6 family rep 99.1 2.9E-09 6.3E-14 96.1 13.8 118 154-271 14-140 (365)
6 cd01128 rho_factor Transcripti 99.0 1.6E-09 3.5E-14 92.1 8.3 99 177-279 15-122 (249)
7 PRK09376 rho transcription ter 98.9 4.2E-09 9.1E-14 93.7 7.3 91 177-271 168-267 (416)
8 TIGR03015 pepcterm_ATPase puta 98.8 9.7E-08 2.1E-12 82.5 14.4 88 177-271 42-134 (269)
9 PF13401 AAA_22: AAA domain; P 98.8 1E-08 2.2E-13 78.6 7.3 93 177-271 3-98 (131)
10 TIGR00767 rho transcription te 98.8 3.1E-08 6.6E-13 88.7 9.5 93 177-271 167-266 (415)
11 PF13191 AAA_16: AAA ATPase do 98.8 2.4E-08 5.3E-13 81.0 8.1 46 157-202 2-48 (185)
12 COG1474 CDC6 Cdc6-related prot 98.7 4.1E-07 9E-12 81.7 13.6 115 154-271 16-134 (366)
13 cd00009 AAA The AAA+ (ATPases 98.6 3.9E-07 8.5E-12 70.3 10.6 58 158-220 1-58 (151)
14 PTZ00202 tuzin; Provisional 98.6 6.6E-07 1.4E-11 80.7 12.3 100 154-266 261-367 (550)
15 PRK11331 5-methylcytosine-spec 98.5 9.2E-07 2E-11 80.5 11.8 107 155-271 175-283 (459)
16 PF01637 Arch_ATPase: Archaeal 98.5 1.7E-07 3.6E-12 78.7 6.1 44 157-202 1-44 (234)
17 PTZ00112 origin recognition co 98.4 4.2E-06 9.1E-11 81.3 12.7 117 154-271 754-880 (1164)
18 TIGR02903 spore_lon_C ATP-depe 98.4 4.3E-05 9.3E-10 73.5 19.6 126 155-284 154-317 (615)
19 PF05729 NACHT: NACHT domain 98.4 1.9E-06 4.2E-11 68.3 8.8 84 179-271 1-92 (166)
20 COG2256 MGS1 ATPase related to 98.4 1.3E-06 2.8E-11 77.4 7.6 87 154-271 29-115 (436)
21 KOG2543 Origin recognition com 98.3 3.3E-06 7.1E-11 74.3 9.8 118 154-278 5-132 (438)
22 KOG2028 ATPase related to the 98.3 1.8E-06 3.8E-11 75.6 8.0 91 154-271 143-233 (554)
23 PRK13342 recombination factor 98.3 1.5E-06 3.3E-11 79.8 7.9 46 155-202 12-60 (413)
24 PRK08118 topology modulation p 98.2 1.1E-06 2.4E-11 70.5 2.9 51 180-232 3-58 (167)
25 TIGR00635 ruvB Holliday juncti 98.1 3E-05 6.5E-10 68.3 10.8 113 155-276 4-123 (305)
26 PF13173 AAA_14: AAA domain 98.1 1.1E-05 2.3E-10 61.7 6.2 78 178-279 2-79 (128)
27 PRK04841 transcriptional regul 98.0 6.7E-05 1.5E-09 75.7 12.4 106 154-271 13-132 (903)
28 PRK13341 recombination factor 98.0 2.1E-05 4.5E-10 76.6 8.2 45 156-202 29-76 (725)
29 smart00382 AAA ATPases associa 98.0 4.1E-05 9E-10 58.3 8.3 87 178-271 2-89 (148)
30 PRK00080 ruvB Holliday junctio 97.9 0.0001 2.2E-09 65.6 11.1 109 155-271 25-140 (328)
31 PRK07261 topology modulation p 97.9 3.9E-05 8.5E-10 61.7 7.3 35 180-215 2-37 (171)
32 PF05621 TniB: Bacterial TniB 97.9 0.00025 5.4E-09 61.4 12.5 114 155-271 34-156 (302)
33 PRK04195 replication factor C 97.9 7.6E-05 1.7E-09 70.0 9.9 48 155-202 14-63 (482)
34 TIGR03420 DnaA_homol_Hda DnaA 97.9 4.4E-05 9.5E-10 64.1 7.5 55 160-219 22-76 (226)
35 CHL00095 clpC Clp protease ATP 97.8 5.1E-05 1.1E-09 75.6 8.4 46 155-202 179-224 (821)
36 PRK12608 transcription termina 97.8 0.00013 2.8E-09 65.2 10.0 114 163-279 119-239 (380)
37 TIGR00763 lon ATP-dependent pr 97.8 0.00069 1.5E-08 67.2 16.1 49 154-202 319-371 (775)
38 PRK06893 DNA replication initi 97.8 0.0001 2.2E-09 62.2 8.9 39 177-218 38-76 (229)
39 PF04665 Pox_A32: Poxvirus A32 97.8 5.9E-05 1.3E-09 63.6 7.3 37 178-217 13-49 (241)
40 TIGR02639 ClpA ATP-dependent C 97.8 0.0001 2.2E-09 72.6 9.9 46 155-202 182-227 (731)
41 PF05496 RuvB_N: Holliday junc 97.8 2.8E-05 6.2E-10 64.4 4.7 48 155-202 24-74 (233)
42 PF00004 AAA: ATPase family as 97.8 4.7E-05 1E-09 57.9 5.7 22 181-202 1-22 (132)
43 KOG2004 Mitochondrial ATP-depe 97.7 0.00059 1.3E-08 64.9 12.8 106 114-225 355-479 (906)
44 TIGR01242 26Sp45 26S proteasom 97.7 0.00012 2.6E-09 66.2 8.1 48 155-202 122-180 (364)
45 PRK03992 proteasome-activating 97.7 0.00016 3.6E-09 65.8 8.8 48 155-202 131-189 (389)
46 KOG2227 Pre-initiation complex 97.7 0.00052 1.1E-08 62.3 11.2 115 154-271 149-267 (529)
47 PRK10787 DNA-binding ATP-depen 97.7 0.00078 1.7E-08 66.6 13.0 49 154-202 321-373 (784)
48 PRK08116 hypothetical protein; 97.7 0.00058 1.3E-08 59.0 10.9 75 179-271 115-189 (268)
49 PRK05564 DNA polymerase III su 97.7 0.00023 5E-09 63.0 8.6 77 156-234 5-85 (313)
50 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0003 6.5E-09 70.2 10.1 46 155-202 187-232 (852)
51 PRK09361 radB DNA repair and r 97.6 0.00043 9.2E-09 58.2 9.3 90 176-270 21-117 (225)
52 PRK08727 hypothetical protein; 97.6 0.00035 7.7E-09 59.1 8.8 59 156-219 21-79 (233)
53 PLN03025 replication factor C 97.6 0.00054 1.2E-08 60.8 10.3 46 155-202 13-58 (319)
54 smart00763 AAA_PrkA PrkA AAA d 97.6 0.0001 2.2E-09 65.5 5.5 49 154-202 50-102 (361)
55 PRK00440 rfc replication facto 97.6 0.00073 1.6E-08 59.7 11.1 46 155-202 17-62 (319)
56 PF05673 DUF815: Protein of un 97.6 0.00046 1E-08 58.0 9.0 90 154-271 26-117 (249)
57 PRK10865 protein disaggregatio 97.6 0.00036 7.7E-09 69.8 9.7 46 155-202 178-223 (857)
58 PRK12377 putative replication 97.6 0.00053 1.2E-08 58.4 9.2 75 177-271 100-174 (248)
59 PF13207 AAA_17: AAA domain; P 97.6 7.2E-05 1.6E-09 56.2 3.6 23 180-202 1-23 (121)
60 TIGR03689 pup_AAA proteasome A 97.6 0.00035 7.6E-09 65.3 8.7 48 155-202 182-240 (512)
61 PRK11034 clpA ATP-dependent Cl 97.6 0.00039 8.4E-09 68.3 9.4 46 155-202 186-231 (758)
62 TIGR02237 recomb_radB DNA repa 97.5 0.00052 1.1E-08 56.9 8.8 91 176-271 10-108 (209)
63 PHA02544 44 clamp loader, smal 97.5 0.00059 1.3E-08 60.3 9.5 47 155-202 21-67 (316)
64 TIGR02881 spore_V_K stage V sp 97.5 0.00026 5.5E-09 61.0 7.0 47 156-202 7-66 (261)
65 PRK14963 DNA polymerase III su 97.5 0.00012 2.6E-09 68.8 5.0 47 155-202 14-60 (504)
66 PRK07952 DNA replication prote 97.5 0.0013 2.8E-08 56.0 10.7 90 163-271 84-173 (244)
67 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00065 1.4E-08 57.3 8.8 94 176-271 17-126 (235)
68 cd01393 recA_like RecA is a b 97.5 0.0019 4.1E-08 54.1 11.5 92 176-271 17-125 (226)
69 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00063 1.4E-08 63.7 8.9 93 156-271 191-293 (802)
70 COG0542 clpA ATP-binding subun 97.5 0.012 2.6E-07 57.5 17.9 106 154-271 490-604 (786)
71 PRK14088 dnaA chromosomal repl 97.5 0.00098 2.1E-08 61.7 10.3 72 155-235 106-180 (440)
72 PRK14949 DNA polymerase III su 97.5 0.00095 2.1E-08 65.8 10.4 46 155-202 16-62 (944)
73 CHL00181 cbbX CbbX; Provisiona 97.4 0.0015 3.2E-08 57.0 10.6 48 155-202 23-83 (287)
74 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00087 1.9E-08 67.2 10.3 46 155-202 173-218 (852)
75 PRK05541 adenylylsulfate kinas 97.4 0.0004 8.8E-09 55.9 6.6 36 177-215 6-41 (176)
76 PRK06835 DNA replication prote 97.4 0.025 5.4E-07 50.3 18.3 24 179-202 184-207 (329)
77 PTZ00454 26S protease regulato 97.4 0.001 2.2E-08 60.7 9.4 48 155-202 145-203 (398)
78 PRK14962 DNA polymerase III su 97.4 0.0014 3E-08 61.1 10.6 46 155-202 14-60 (472)
79 PRK14957 DNA polymerase III su 97.4 0.0015 3.3E-08 61.8 10.5 47 155-202 16-62 (546)
80 TIGR02880 cbbX_cfxQ probable R 97.4 0.0024 5.1E-08 55.7 11.0 47 156-202 23-82 (284)
81 PRK00149 dnaA chromosomal repl 97.4 0.0012 2.7E-08 61.4 9.8 47 156-202 124-172 (450)
82 COG0466 Lon ATP-dependent Lon 97.4 0.00055 1.2E-08 65.2 7.3 53 154-209 322-378 (782)
83 PRK14956 DNA polymerase III su 97.4 0.00075 1.6E-08 62.5 8.1 46 155-202 18-64 (484)
84 PRK06696 uridine kinase; Valid 97.4 0.00041 9E-09 58.2 6.0 44 159-202 2-46 (223)
85 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00094 2E-08 57.5 8.1 100 177-279 68-182 (274)
86 TIGR01241 FtsH_fam ATP-depende 97.4 0.00097 2.1E-08 62.8 9.0 48 155-202 55-112 (495)
87 TIGR00362 DnaA chromosomal rep 97.3 0.0022 4.8E-08 58.8 11.0 48 155-202 111-160 (405)
88 PRK14087 dnaA chromosomal repl 97.3 0.0012 2.5E-08 61.4 9.0 100 155-271 116-217 (450)
89 PRK08084 DNA replication initi 97.3 0.0012 2.6E-08 56.0 8.3 61 154-219 22-83 (235)
90 cd01120 RecA-like_NTPases RecA 97.3 0.0029 6.4E-08 49.5 10.1 40 180-222 1-40 (165)
91 PF00308 Bac_DnaA: Bacterial d 97.3 0.0022 4.9E-08 53.7 9.6 49 154-202 8-58 (219)
92 KOG0991 Replication factor C, 97.3 0.0017 3.6E-08 54.1 8.5 46 155-202 27-72 (333)
93 PRK07667 uridine kinase; Provi 97.3 0.00043 9.3E-09 56.8 5.2 39 164-202 3-41 (193)
94 PRK14955 DNA polymerase III su 97.3 0.0022 4.8E-08 58.7 10.4 46 155-202 16-62 (397)
95 PRK14958 DNA polymerase III su 97.3 0.0024 5.3E-08 60.1 10.6 46 155-202 16-62 (509)
96 PRK15455 PrkA family serine pr 97.3 0.00039 8.5E-09 65.3 5.2 47 156-202 77-127 (644)
97 PRK08233 hypothetical protein; 97.3 0.00082 1.8E-08 54.2 6.5 26 177-202 2-27 (182)
98 cd01394 radB RadB. The archaea 97.3 0.0037 8.1E-08 52.1 10.6 91 176-271 17-114 (218)
99 CHL00176 ftsH cell division pr 97.2 0.0013 2.9E-08 63.4 8.8 94 155-271 183-286 (638)
100 PRK12402 replication factor C 97.2 0.00043 9.4E-09 61.6 5.2 46 155-202 15-60 (337)
101 TIGR00959 ffh signal recogniti 97.2 0.0038 8.3E-08 57.4 11.3 26 177-202 98-123 (428)
102 COG2909 MalT ATP-dependent tra 97.2 0.0047 1E-07 60.1 12.1 102 165-271 25-140 (894)
103 PRK03839 putative kinase; Prov 97.2 0.0016 3.4E-08 52.7 7.8 23 180-202 2-24 (180)
104 PRK04301 radA DNA repair and r 97.2 0.0044 9.5E-08 54.9 11.2 94 176-271 100-209 (317)
105 PLN00020 ribulose bisphosphate 97.2 0.00096 2.1E-08 59.5 6.7 27 176-202 146-172 (413)
106 COG2255 RuvB Holliday junction 97.2 0.00052 1.1E-08 58.6 4.8 48 155-202 26-76 (332)
107 PRK14960 DNA polymerase III su 97.2 0.003 6.5E-08 60.6 10.3 47 155-202 15-61 (702)
108 PRK06645 DNA polymerase III su 97.2 0.0018 3.8E-08 60.8 8.7 47 155-202 21-67 (507)
109 PRK08939 primosomal protein Dn 97.2 0.0043 9.2E-08 54.7 10.6 92 159-271 135-228 (306)
110 TIGR00602 rad24 checkpoint pro 97.2 0.00092 2E-08 64.2 6.7 48 155-202 84-134 (637)
111 PRK10867 signal recognition pa 97.1 0.0056 1.2E-07 56.4 11.2 26 177-202 99-124 (433)
112 TIGR02012 tigrfam_recA protein 97.1 0.002 4.4E-08 56.8 7.9 88 176-271 53-144 (321)
113 TIGR03499 FlhF flagellar biosy 97.1 0.0046 9.9E-08 53.9 10.0 85 177-268 193-280 (282)
114 PRK07003 DNA polymerase III su 97.1 0.0045 9.8E-08 60.1 10.6 47 155-202 16-62 (830)
115 PRK04296 thymidine kinase; Pro 97.1 0.0011 2.5E-08 54.1 5.8 86 179-270 3-88 (190)
116 PTZ00361 26 proteosome regulat 97.1 0.0015 3.2E-08 60.2 7.1 47 156-202 184-241 (438)
117 cd03115 SRP The signal recogni 97.1 0.0034 7.3E-08 50.4 8.4 23 180-202 2-24 (173)
118 PRK00771 signal recognition pa 97.1 0.0071 1.5E-07 55.8 11.4 56 177-236 94-151 (437)
119 PRK14951 DNA polymerase III su 97.1 0.0037 8E-08 60.0 9.8 47 155-202 16-62 (618)
120 PRK05480 uridine/cytidine kina 97.1 0.0006 1.3E-08 56.6 4.0 26 177-202 5-30 (209)
121 PRK06762 hypothetical protein; 97.1 0.0042 9E-08 49.4 8.7 25 178-202 2-26 (166)
122 COG1484 DnaC DNA replication p 97.1 0.003 6.6E-08 54.1 8.2 75 177-271 104-178 (254)
123 PF00448 SRP54: SRP54-type pro 97.1 0.0043 9.3E-08 51.0 8.8 37 178-217 1-37 (196)
124 cd00983 recA RecA is a bacter 97.1 0.0024 5.3E-08 56.4 7.8 88 176-271 53-144 (325)
125 TIGR01243 CDC48 AAA family ATP 97.1 0.0025 5.4E-08 63.0 8.7 47 156-202 179-236 (733)
126 PRK09270 nucleoside triphospha 97.0 0.011 2.3E-07 49.9 11.4 27 176-202 31-57 (229)
127 PRK12323 DNA polymerase III su 97.0 0.0048 1E-07 59.1 10.1 46 155-202 16-62 (700)
128 PF13238 AAA_18: AAA domain; P 97.0 0.00058 1.2E-08 51.6 3.3 21 181-201 1-21 (129)
129 PRK06547 hypothetical protein; 97.0 0.0012 2.5E-08 53.2 5.2 34 167-202 6-39 (172)
130 TIGR00235 udk uridine kinase. 97.0 0.00064 1.4E-08 56.4 3.7 26 177-202 5-30 (207)
131 PRK09354 recA recombinase A; P 97.0 0.0029 6.4E-08 56.3 8.0 88 176-271 58-149 (349)
132 PRK08181 transposase; Validate 97.0 0.0031 6.7E-08 54.4 7.9 24 179-202 107-130 (269)
133 PF01695 IstB_IS21: IstB-like 97.0 0.0022 4.7E-08 51.9 6.5 73 178-271 47-119 (178)
134 PF00158 Sigma54_activat: Sigm 97.0 0.0042 9.2E-08 49.7 8.0 72 157-232 1-72 (168)
135 PRK06067 flagellar accessory p 97.0 0.0088 1.9E-07 50.5 10.4 89 176-270 23-130 (234)
136 PF00485 PRK: Phosphoribulokin 97.0 0.00067 1.5E-08 55.6 3.4 82 180-264 1-87 (194)
137 PRK07994 DNA polymerase III su 97.0 0.0055 1.2E-07 59.0 10.0 46 155-202 16-62 (647)
138 COG0572 Udk Uridine kinase [Nu 97.0 0.0033 7.1E-08 52.0 7.3 26 177-202 7-32 (218)
139 PRK14970 DNA polymerase III su 97.0 0.0076 1.6E-07 54.5 10.4 47 155-202 17-63 (367)
140 PLN03186 DNA repair protein RA 97.0 0.011 2.4E-07 52.8 11.2 99 171-271 116-229 (342)
141 PRK14969 DNA polymerase III su 97.0 0.0077 1.7E-07 57.1 10.7 46 155-202 16-62 (527)
142 PRK08691 DNA polymerase III su 97.0 0.0023 5.1E-08 61.6 7.3 47 155-202 16-62 (709)
143 PTZ00301 uridine kinase; Provi 97.0 0.0012 2.7E-08 54.8 4.8 26 177-202 2-27 (210)
144 cd02025 PanK Pantothenate kina 97.0 0.007 1.5E-07 50.7 9.4 23 180-202 1-23 (220)
145 PRK06526 transposase; Provisio 96.9 0.0031 6.8E-08 54.0 7.3 25 178-202 98-122 (254)
146 KOG0734 AAA+-type ATPase conta 96.9 0.002 4.2E-08 59.6 6.2 46 157-202 306-361 (752)
147 TIGR02238 recomb_DMC1 meiotic 96.9 0.015 3.3E-07 51.3 11.8 99 171-271 89-202 (313)
148 PRK14954 DNA polymerase III su 96.9 0.0095 2.1E-07 57.4 11.2 46 155-202 16-62 (620)
149 COG1618 Predicted nucleotide k 96.9 0.0014 3E-08 51.4 4.5 25 178-202 5-29 (179)
150 PHA00729 NTP-binding motif con 96.9 0.0016 3.5E-08 54.3 5.2 35 166-202 7-41 (226)
151 PRK09183 transposase/IS protei 96.9 0.0042 9.2E-08 53.4 8.0 25 178-202 102-126 (259)
152 PF08433 KTI12: Chromatin asso 96.9 0.0024 5.1E-08 55.2 6.3 23 180-202 3-25 (270)
153 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0093 2E-07 50.5 9.9 95 171-271 14-137 (237)
154 TIGR02236 recomb_radA DNA repa 96.9 0.0085 1.8E-07 52.9 10.0 99 171-271 88-203 (310)
155 PRK06921 hypothetical protein; 96.9 0.0079 1.7E-07 51.9 9.5 39 177-217 116-154 (266)
156 KOG3347 Predicted nucleotide k 96.9 0.0017 3.6E-08 50.2 4.6 72 177-261 6-77 (176)
157 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0096 2.1E-07 59.8 11.3 49 154-202 564-619 (852)
158 TIGR02639 ClpA ATP-dependent C 96.9 0.008 1.7E-07 59.4 10.6 49 154-202 453-508 (731)
159 PRK08903 DnaA regulatory inact 96.9 0.002 4.4E-08 54.1 5.7 46 157-202 21-66 (227)
160 PF13671 AAA_33: AAA domain; P 96.9 0.001 2.2E-08 51.4 3.6 23 180-202 1-23 (143)
161 TIGR00554 panK_bact pantothena 96.9 0.011 2.5E-07 51.5 10.4 27 176-202 60-86 (290)
162 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0098 2.1E-07 52.6 10.1 99 171-271 89-202 (316)
163 cd01131 PilT Pilus retraction 96.9 0.0015 3.2E-08 53.8 4.5 83 179-274 2-87 (198)
164 PRK12422 chromosomal replicati 96.9 0.0044 9.5E-08 57.5 8.0 25 178-202 141-165 (445)
165 PRK13531 regulatory ATPase Rav 96.9 0.0019 4.2E-08 59.7 5.6 44 155-202 20-63 (498)
166 PRK10865 protein disaggregatio 96.8 0.0094 2E-07 59.8 10.8 49 154-202 567-622 (857)
167 COG1102 Cmk Cytidylate kinase 96.8 0.0026 5.6E-08 49.9 5.3 44 180-237 2-45 (179)
168 COG0468 RecA RecA/RadA recombi 96.8 0.011 2.4E-07 51.1 9.8 92 176-271 58-152 (279)
169 PRK14961 DNA polymerase III su 96.8 0.0023 5E-08 57.8 5.8 47 155-202 16-62 (363)
170 PLN03187 meiotic recombination 96.8 0.021 4.5E-07 51.0 11.7 99 171-271 119-232 (344)
171 KOG0736 Peroxisome assembly fa 96.8 0.026 5.6E-07 54.6 12.7 94 155-271 672-775 (953)
172 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0014 2.9E-08 53.2 3.7 26 177-202 2-27 (188)
173 cd02019 NK Nucleoside/nucleoti 96.8 0.0014 3E-08 44.2 3.1 23 180-202 1-23 (69)
174 KOG0735 AAA+-type ATPase [Post 96.8 0.0092 2E-07 57.1 9.3 88 163-271 416-505 (952)
175 cd03238 ABC_UvrA The excision 96.8 0.01 2.2E-07 47.9 8.5 87 177-271 20-118 (176)
176 TIGR01243 CDC48 AAA family ATP 96.8 0.0081 1.7E-07 59.4 9.5 48 155-202 453-511 (733)
177 PRK05439 pantothenate kinase; 96.7 0.023 5E-07 50.0 11.3 28 175-202 83-110 (311)
178 PRK11889 flhF flagellar biosyn 96.7 0.023 4.9E-07 51.5 11.3 26 177-202 240-265 (436)
179 TIGR00390 hslU ATP-dependent p 96.7 0.0074 1.6E-07 54.9 8.3 49 154-202 11-71 (441)
180 PF03205 MobB: Molybdopterin g 96.7 0.0033 7.2E-08 48.7 5.3 39 179-219 1-39 (140)
181 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0087 1.9E-07 60.0 9.6 49 154-202 565-620 (852)
182 PRK07940 DNA polymerase III su 96.7 0.016 3.4E-07 52.9 10.4 48 155-202 5-60 (394)
183 PRK14950 DNA polymerase III su 96.7 0.0097 2.1E-07 57.3 9.5 47 155-202 16-62 (585)
184 PRK04040 adenylate kinase; Pro 96.7 0.0017 3.6E-08 53.1 3.7 47 178-236 2-48 (188)
185 PRK10463 hydrogenase nickel in 96.7 0.016 3.4E-07 50.4 9.8 89 176-271 102-195 (290)
186 COG1222 RPT1 ATP-dependent 26S 96.7 0.013 2.9E-07 51.7 9.3 46 157-202 153-209 (406)
187 PRK08927 fliI flagellum-specif 96.7 0.0063 1.4E-07 55.9 7.7 99 177-280 157-268 (442)
188 PRK08972 fliI flagellum-specif 96.7 0.01 2.2E-07 54.5 8.9 98 177-279 161-271 (444)
189 PF08423 Rad51: Rad51; InterP 96.7 0.012 2.6E-07 50.5 9.0 94 176-271 36-144 (256)
190 PTZ00035 Rad51 protein; Provis 96.7 0.034 7.4E-07 49.7 12.2 99 171-271 111-224 (337)
191 PF07728 AAA_5: AAA domain (dy 96.7 0.0054 1.2E-07 47.2 6.3 42 181-228 2-43 (139)
192 KOG0744 AAA+-type ATPase [Post 96.7 0.0092 2E-07 52.1 8.1 82 177-271 176-261 (423)
193 cd02023 UMPK Uridine monophosp 96.7 0.0013 2.9E-08 54.0 2.9 23 180-202 1-23 (198)
194 COG4608 AppF ABC-type oligopep 96.7 0.0068 1.5E-07 51.6 7.2 91 177-271 38-138 (268)
195 KOG1969 DNA replication checkp 96.7 0.0054 1.2E-07 58.7 7.2 72 177-271 325-398 (877)
196 PRK12724 flagellar biosynthesi 96.7 0.011 2.5E-07 53.9 9.0 26 177-202 222-247 (432)
197 cd02028 UMPK_like Uridine mono 96.7 0.0061 1.3E-07 49.3 6.7 23 180-202 1-23 (179)
198 cd01121 Sms Sms (bacterial rad 96.7 0.0088 1.9E-07 54.1 8.3 86 177-271 81-169 (372)
199 PRK14086 dnaA chromosomal repl 96.7 0.013 2.8E-07 56.0 9.7 25 178-202 314-338 (617)
200 CHL00095 clpC Clp protease ATP 96.7 0.019 4.2E-07 57.5 11.5 49 154-202 508-563 (821)
201 TIGR00064 ftsY signal recognit 96.7 0.02 4.4E-07 49.5 10.2 26 177-202 71-96 (272)
202 PRK14722 flhF flagellar biosyn 96.7 0.013 2.7E-07 52.9 9.2 26 177-202 136-161 (374)
203 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0046 1E-07 47.4 5.5 40 163-202 7-46 (133)
204 PRK05201 hslU ATP-dependent pr 96.6 0.007 1.5E-07 55.1 7.5 49 154-202 14-74 (443)
205 PF12061 DUF3542: Protein of u 96.6 0.0018 3.9E-08 55.8 3.4 74 12-93 299-373 (402)
206 PRK07594 type III secretion sy 96.6 0.011 2.4E-07 54.3 8.7 98 177-279 154-264 (433)
207 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.025 5.5E-07 47.5 10.4 89 177-271 19-132 (229)
208 PRK12723 flagellar biosynthesi 96.6 0.035 7.5E-07 50.5 11.7 26 177-202 173-198 (388)
209 PRK09087 hypothetical protein; 96.6 0.011 2.3E-07 49.8 8.0 25 178-202 44-68 (226)
210 cd01135 V_A-ATPase_B V/A-type 96.6 0.013 2.8E-07 50.5 8.5 102 177-279 68-185 (276)
211 PRK12678 transcription termina 96.6 0.0035 7.5E-08 59.0 5.3 90 177-271 415-514 (672)
212 PRK08149 ATP synthase SpaL; Va 96.6 0.0082 1.8E-07 55.0 7.6 98 177-279 150-260 (428)
213 PF12775 AAA_7: P-loop contain 96.6 0.0019 4.2E-08 55.9 3.5 89 164-271 22-111 (272)
214 PRK14974 cell division protein 96.6 0.036 7.8E-07 49.4 11.5 26 177-202 139-164 (336)
215 PTZ00088 adenylate kinase 1; P 96.6 0.0053 1.1E-07 51.7 5.9 22 181-202 9-30 (229)
216 PRK00625 shikimate kinase; Pro 96.6 0.0021 4.5E-08 51.8 3.3 23 180-202 2-24 (173)
217 COG0467 RAD55 RecA-superfamily 96.6 0.0074 1.6E-07 51.9 6.9 90 176-271 21-135 (260)
218 TIGR02902 spore_lonB ATP-depen 96.6 0.006 1.3E-07 57.9 6.8 45 156-202 66-110 (531)
219 cd02027 APSK Adenosine 5'-phos 96.6 0.017 3.8E-07 45.2 8.4 23 180-202 1-23 (149)
220 PRK12597 F0F1 ATP synthase sub 96.5 0.021 4.5E-07 53.0 10.0 101 177-279 142-256 (461)
221 PRK04328 hypothetical protein; 96.5 0.016 3.5E-07 49.5 8.8 89 177-271 22-139 (249)
222 cd00227 CPT Chloramphenicol (C 96.5 0.0022 4.7E-08 51.7 3.2 24 179-202 3-26 (175)
223 PTZ00185 ATPase alpha subunit; 96.5 0.015 3.2E-07 54.2 8.8 102 177-279 188-308 (574)
224 TIGR02640 gas_vesic_GvpN gas v 96.5 0.011 2.3E-07 51.0 7.5 55 162-226 9-63 (262)
225 PRK00889 adenylylsulfate kinas 96.5 0.003 6.5E-08 50.8 3.8 26 177-202 3-28 (175)
226 CHL00195 ycf46 Ycf46; Provisio 96.5 0.015 3.3E-07 54.4 9.0 48 155-202 228-283 (489)
227 PRK00131 aroK shikimate kinase 96.5 0.003 6.5E-08 50.4 3.8 26 177-202 3-28 (175)
228 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0022 4.8E-08 51.9 3.0 23 180-202 1-23 (183)
229 PRK09280 F0F1 ATP synthase sub 96.5 0.025 5.4E-07 52.3 10.1 102 177-280 143-258 (463)
230 CHL00081 chlI Mg-protoporyphyr 96.5 0.0038 8.2E-08 55.8 4.7 46 155-202 17-62 (350)
231 PF05659 RPW8: Arabidopsis bro 96.5 0.015 3.2E-07 45.4 7.4 112 3-131 3-115 (147)
232 PF00154 RecA: recA bacterial 96.5 0.011 2.5E-07 52.0 7.5 87 177-271 52-142 (322)
233 cd02024 NRK1 Nicotinamide ribo 96.5 0.0023 4.9E-08 52.1 2.9 23 180-202 1-23 (187)
234 PRK10751 molybdopterin-guanine 96.4 0.0036 7.7E-08 50.2 3.9 26 177-202 5-30 (173)
235 PRK05703 flhF flagellar biosyn 96.4 0.033 7.1E-07 51.4 10.7 25 178-202 221-245 (424)
236 PRK08533 flagellar accessory p 96.4 0.032 6.8E-07 47.1 9.8 52 177-235 23-75 (230)
237 TIGR00764 lon_rel lon-related 96.4 0.014 3E-07 56.4 8.5 76 154-236 17-92 (608)
238 TIGR02322 phosphon_PhnN phosph 96.4 0.0029 6.2E-08 51.0 3.4 24 179-202 2-25 (179)
239 PF06309 Torsin: Torsin; Inte 96.4 0.0093 2E-07 45.0 5.7 47 155-201 25-76 (127)
240 COG1373 Predicted ATPase (AAA+ 96.4 0.013 2.8E-07 53.7 7.8 90 162-280 24-113 (398)
241 PRK11034 clpA ATP-dependent Cl 96.4 0.023 5.1E-07 56.0 10.0 48 155-202 458-512 (758)
242 TIGR00678 holB DNA polymerase 96.4 0.051 1.1E-06 44.1 10.6 35 166-202 3-38 (188)
243 cd02020 CMPK Cytidine monophos 96.4 0.0029 6.3E-08 49.0 3.1 23 180-202 1-23 (147)
244 PRK13765 ATP-dependent proteas 96.4 0.0083 1.8E-07 57.9 6.7 75 155-236 31-105 (637)
245 COG1936 Predicted nucleotide k 96.4 0.0028 6.1E-08 50.2 2.8 20 180-199 2-21 (180)
246 PRK00300 gmk guanylate kinase; 96.4 0.0036 7.8E-08 51.6 3.6 26 177-202 4-29 (205)
247 PRK06217 hypothetical protein; 96.4 0.0032 6.9E-08 51.1 3.2 34 180-215 3-38 (183)
248 TIGR02030 BchI-ChlI magnesium 96.4 0.0063 1.4E-07 54.2 5.3 45 155-201 4-48 (337)
249 PRK12727 flagellar biosynthesi 96.4 0.023 5.1E-07 53.3 9.2 26 177-202 349-374 (559)
250 PRK05896 DNA polymerase III su 96.4 0.0053 1.1E-07 58.5 5.1 47 155-202 16-62 (605)
251 COG0470 HolB ATPase involved i 96.4 0.044 9.6E-07 48.3 10.8 46 157-202 3-48 (325)
252 PRK14738 gmk guanylate kinase; 96.4 0.0036 7.9E-08 51.9 3.6 31 171-201 6-36 (206)
253 COG1703 ArgK Putative periplas 96.3 0.0079 1.7E-07 51.9 5.6 64 164-228 37-100 (323)
254 TIGR03263 guanyl_kin guanylate 96.3 0.003 6.5E-08 50.9 3.0 24 179-202 2-25 (180)
255 cd01132 F1_ATPase_alpha F1 ATP 96.3 0.016 3.5E-07 49.9 7.5 99 177-280 68-181 (274)
256 PRK03846 adenylylsulfate kinas 96.3 0.0044 9.6E-08 51.0 4.0 26 177-202 23-48 (198)
257 PF00006 ATP-synt_ab: ATP synt 96.3 0.019 4.1E-07 47.8 7.7 89 178-271 15-116 (215)
258 PF00625 Guanylate_kin: Guanyl 96.3 0.0065 1.4E-07 49.2 4.9 36 178-216 2-37 (183)
259 PRK14964 DNA polymerase III su 96.3 0.006 1.3E-07 57.0 5.1 45 155-201 13-58 (491)
260 PRK06936 type III secretion sy 96.3 0.027 5.8E-07 51.8 9.2 98 177-279 161-271 (439)
261 COG0237 CoaE Dephospho-CoA kin 96.3 0.017 3.6E-07 47.6 7.2 23 178-200 2-24 (201)
262 PRK06002 fliI flagellum-specif 96.3 0.011 2.3E-07 54.5 6.7 99 177-279 164-273 (450)
263 PRK14721 flhF flagellar biosyn 96.3 0.049 1.1E-06 50.0 10.9 25 177-201 190-214 (420)
264 PF00910 RNA_helicase: RNA hel 96.3 0.0033 7.1E-08 46.3 2.7 22 181-202 1-22 (107)
265 PRK13949 shikimate kinase; Pro 96.3 0.0038 8.1E-08 50.1 3.3 23 180-202 3-25 (169)
266 PF08477 Miro: Miro-like prote 96.3 0.0039 8.5E-08 46.4 3.2 22 181-202 2-23 (119)
267 COG1428 Deoxynucleoside kinase 96.3 0.004 8.6E-08 51.1 3.3 25 178-202 4-28 (216)
268 PRK04182 cytidylate kinase; Pr 96.3 0.013 2.7E-07 47.1 6.3 23 180-202 2-24 (180)
269 PRK10536 hypothetical protein; 96.3 0.041 8.8E-07 46.9 9.4 43 156-202 56-98 (262)
270 TIGR03305 alt_F1F0_F1_bet alte 96.3 0.027 5.8E-07 52.0 9.0 101 177-279 137-251 (449)
271 PF05970 PIF1: PIF1-like helic 96.3 0.015 3.2E-07 52.6 7.3 38 163-202 9-46 (364)
272 cd01136 ATPase_flagellum-secre 96.3 0.02 4.3E-07 50.7 7.8 90 177-271 68-170 (326)
273 PF01583 APS_kinase: Adenylyls 96.2 0.0055 1.2E-07 48.2 3.9 25 178-202 2-26 (156)
274 PRK07196 fliI flagellum-specif 96.2 0.019 4.2E-07 52.7 7.9 99 177-280 154-265 (434)
275 cd02021 GntK Gluconate kinase 96.2 0.0038 8.2E-08 48.7 3.0 23 180-202 1-23 (150)
276 PF03308 ArgK: ArgK protein; 96.2 0.011 2.3E-07 50.3 5.7 63 163-226 14-76 (266)
277 TIGR03575 selen_PSTK_euk L-ser 96.2 0.021 4.6E-07 50.9 7.9 22 181-202 2-23 (340)
278 COG2607 Predicted ATPase (AAA+ 96.2 0.021 4.6E-07 47.8 7.3 48 155-202 60-109 (287)
279 PF08298 AAA_PrkA: PrkA AAA do 96.2 0.0086 1.9E-07 53.1 5.4 49 154-202 60-112 (358)
280 PRK13947 shikimate kinase; Pro 96.2 0.0044 9.4E-08 49.5 3.3 23 180-202 3-25 (171)
281 PRK14971 DNA polymerase III su 96.2 0.05 1.1E-06 52.6 11.0 46 155-202 17-63 (614)
282 PRK05800 cobU adenosylcobinami 96.2 0.025 5.5E-07 45.3 7.7 84 180-271 3-87 (170)
283 PRK14530 adenylate kinase; Pro 96.2 0.0046 1E-07 51.5 3.5 24 179-202 4-27 (215)
284 PRK14959 DNA polymerase III su 96.2 0.046 9.9E-07 52.5 10.5 47 155-202 16-62 (624)
285 PRK14723 flhF flagellar biosyn 96.2 0.067 1.5E-06 52.5 11.7 25 178-202 185-209 (767)
286 PRK10078 ribose 1,5-bisphospho 96.2 0.0042 9.1E-08 50.6 3.1 24 179-202 3-26 (186)
287 cd01130 VirB11-like_ATPase Typ 96.2 0.0059 1.3E-07 49.7 4.0 93 178-279 25-118 (186)
288 KOG1532 GTPase XAB1, interacts 96.2 0.0067 1.5E-07 51.6 4.2 61 176-237 17-86 (366)
289 TIGR02397 dnaX_nterm DNA polym 96.2 0.01 2.2E-07 53.3 5.8 47 155-202 14-60 (355)
290 TIGR01425 SRP54_euk signal rec 96.2 0.07 1.5E-06 49.0 11.2 26 177-202 99-124 (429)
291 TIGR00176 mobB molybdopterin-g 96.2 0.0085 1.8E-07 47.3 4.7 36 180-217 1-36 (155)
292 COG1223 Predicted ATPase (AAA+ 96.2 0.0075 1.6E-07 51.1 4.5 48 155-202 121-175 (368)
293 COG0464 SpoVK ATPases of the A 96.2 0.015 3.3E-07 54.8 7.2 73 176-271 274-346 (494)
294 cd00464 SK Shikimate kinase (S 96.2 0.0049 1.1E-07 48.2 3.3 22 181-202 2-23 (154)
295 PRK12726 flagellar biosynthesi 96.2 0.054 1.2E-06 48.9 10.1 26 177-202 205-230 (407)
296 PRK13975 thymidylate kinase; P 96.2 0.0055 1.2E-07 50.1 3.6 24 179-202 3-26 (196)
297 PRK05642 DNA replication initi 96.2 0.018 3.8E-07 48.8 6.8 38 178-218 45-82 (234)
298 PRK15453 phosphoribulokinase; 96.2 0.067 1.5E-06 46.3 10.3 78 177-258 4-88 (290)
299 PRK06620 hypothetical protein; 96.1 0.014 2.9E-07 48.7 6.0 49 154-202 16-68 (214)
300 PF14516 AAA_35: AAA-like doma 96.1 0.12 2.6E-06 46.1 12.4 111 155-271 11-138 (331)
301 COG1116 TauB ABC-type nitrate/ 96.1 0.0044 9.6E-08 52.1 3.0 94 177-271 28-159 (248)
302 PRK13695 putative NTPase; Prov 96.1 0.0084 1.8E-07 48.1 4.6 34 180-215 2-35 (174)
303 COG3640 CooC CO dehydrogenase 96.1 0.013 2.8E-07 48.9 5.6 23 180-202 2-24 (255)
304 KOG0739 AAA+-type ATPase [Post 96.1 0.036 7.7E-07 48.0 8.4 48 155-202 133-190 (439)
305 PRK14952 DNA polymerase III su 96.1 0.0083 1.8E-07 57.4 5.2 46 155-202 13-59 (584)
306 TIGR01040 V-ATPase_V1_B V-type 96.1 0.021 4.5E-07 52.6 7.5 103 177-280 140-267 (466)
307 PRK05688 fliI flagellum-specif 96.1 0.019 4.1E-07 53.0 7.3 98 177-279 167-277 (451)
308 PF07693 KAP_NTPase: KAP famil 96.1 0.036 7.7E-07 49.1 9.0 73 161-234 2-80 (325)
309 PRK09435 membrane ATPase/prote 96.1 0.022 4.7E-07 50.7 7.5 39 164-202 42-80 (332)
310 TIGR02173 cyt_kin_arch cytidyl 96.1 0.016 3.4E-07 46.2 6.1 23 180-202 2-24 (171)
311 COG1124 DppF ABC-type dipeptid 96.1 0.0047 1E-07 51.7 3.0 24 177-200 32-55 (252)
312 KOG0741 AAA+-type ATPase [Post 96.1 0.032 6.9E-07 51.9 8.5 82 177-285 537-622 (744)
313 TIGR00041 DTMP_kinase thymidyl 96.1 0.067 1.4E-06 43.6 9.9 24 179-202 4-27 (195)
314 TIGR00750 lao LAO/AO transport 96.1 0.014 3.1E-07 51.3 6.3 39 164-202 20-58 (300)
315 PRK00279 adk adenylate kinase; 96.1 0.011 2.5E-07 49.2 5.4 23 180-202 2-24 (215)
316 PF01078 Mg_chelatase: Magnesi 96.1 0.011 2.4E-07 48.6 5.2 42 155-200 3-44 (206)
317 PLN02318 phosphoribulokinase/u 96.1 0.0078 1.7E-07 57.0 4.8 34 169-202 56-89 (656)
318 TIGR00073 hypB hydrogenase acc 96.1 0.008 1.7E-07 49.8 4.3 26 177-202 21-46 (207)
319 TIGR01351 adk adenylate kinase 96.1 0.029 6.3E-07 46.5 7.7 22 181-202 2-23 (210)
320 PRK06995 flhF flagellar biosyn 96.1 0.052 1.1E-06 50.6 10.0 26 177-202 255-280 (484)
321 PRK14527 adenylate kinase; Pro 96.1 0.0067 1.5E-07 49.5 3.8 26 177-202 5-30 (191)
322 PRK05922 type III secretion sy 96.1 0.045 9.7E-07 50.3 9.4 98 177-279 156-266 (434)
323 PRK09519 recA DNA recombinatio 96.1 0.046 1E-06 53.8 9.9 88 176-271 58-149 (790)
324 PRK12339 2-phosphoglycerate ki 96.1 0.0073 1.6E-07 49.7 3.9 26 177-202 2-27 (197)
325 COG1120 FepC ABC-type cobalami 96.1 0.0056 1.2E-07 52.2 3.3 25 177-201 27-51 (258)
326 cd01672 TMPK Thymidine monopho 96.1 0.02 4.3E-07 46.6 6.5 23 180-202 2-24 (200)
327 PRK11823 DNA repair protein Ra 96.1 0.027 5.8E-07 52.4 8.0 92 171-271 73-167 (446)
328 PF14532 Sigma54_activ_2: Sigm 96.0 0.0057 1.2E-07 47.2 3.1 45 158-202 1-45 (138)
329 cd00071 GMPK Guanosine monopho 96.0 0.0053 1.1E-07 47.4 2.8 23 180-202 1-23 (137)
330 PRK13407 bchI magnesium chelat 96.0 0.01 2.2E-07 52.9 5.0 45 155-201 8-52 (334)
331 TIGR03498 FliI_clade3 flagella 96.0 0.04 8.6E-07 50.5 8.9 98 177-279 139-249 (418)
332 COG0563 Adk Adenylate kinase a 96.0 0.006 1.3E-07 49.3 3.2 23 180-202 2-24 (178)
333 COG0593 DnaA ATPase involved i 96.0 0.029 6.2E-07 51.0 7.8 63 154-219 87-151 (408)
334 cd00820 PEPCK_HprK Phosphoenol 96.0 0.0065 1.4E-07 44.6 3.1 23 177-199 14-36 (107)
335 PRK05057 aroK shikimate kinase 96.0 0.0071 1.5E-07 48.6 3.6 25 178-202 4-28 (172)
336 PF13481 AAA_25: AAA domain; P 96.0 0.076 1.6E-06 43.1 9.8 91 178-271 32-152 (193)
337 TIGR02546 III_secr_ATP type II 96.0 0.063 1.4E-06 49.4 10.2 98 177-279 144-254 (422)
338 COG0714 MoxR-like ATPases [Gen 96.0 0.022 4.7E-07 50.8 7.0 64 155-228 24-87 (329)
339 COG1126 GlnQ ABC-type polar am 96.0 0.0062 1.4E-07 50.2 3.1 94 177-275 27-168 (240)
340 KOG0733 Nuclear AAA ATPase (VC 96.0 0.011 2.4E-07 55.6 5.1 72 177-271 544-615 (802)
341 PF00005 ABC_tran: ABC transpo 96.0 0.0063 1.4E-07 46.6 3.1 26 177-202 10-35 (137)
342 TIGR01313 therm_gnt_kin carboh 96.0 0.0053 1.2E-07 48.7 2.7 22 181-202 1-22 (163)
343 PRK09111 DNA polymerase III su 96.0 0.01 2.2E-07 57.0 5.0 47 155-202 24-70 (598)
344 TIGR01039 atpD ATP synthase, F 96.0 0.027 5.9E-07 52.0 7.5 102 177-280 142-257 (461)
345 KOG0927 Predicted transporter 96.0 0.073 1.6E-06 49.6 10.2 119 158-278 397-544 (614)
346 PRK05537 bifunctional sulfate 95.9 0.014 3.1E-07 55.7 5.9 48 155-202 369-416 (568)
347 COG2019 AdkA Archaeal adenylat 95.9 0.0069 1.5E-07 47.8 3.0 24 178-201 4-27 (189)
348 TIGR03496 FliI_clade1 flagella 95.9 0.03 6.5E-07 51.3 7.6 98 177-279 136-246 (411)
349 PRK10416 signal recognition pa 95.9 0.087 1.9E-06 46.7 10.3 26 177-202 113-138 (318)
350 TIGR01287 nifH nitrogenase iro 95.9 0.0057 1.2E-07 53.0 2.8 24 179-202 1-24 (275)
351 PLN02200 adenylate kinase fami 95.9 0.0091 2E-07 50.5 4.0 26 177-202 42-67 (234)
352 PF07726 AAA_3: ATPase family 95.9 0.0087 1.9E-07 45.3 3.4 27 181-210 2-28 (131)
353 COG0542 clpA ATP-binding subun 95.9 0.014 2.9E-07 57.1 5.5 45 155-201 170-214 (786)
354 PF13521 AAA_28: AAA domain; P 95.9 0.0069 1.5E-07 48.0 2.9 21 181-201 2-22 (163)
355 PRK13948 shikimate kinase; Pro 95.9 0.01 2.2E-07 48.1 4.0 26 177-202 9-34 (182)
356 PF13086 AAA_11: AAA domain; P 95.9 0.019 4E-07 47.9 5.7 53 180-232 19-75 (236)
357 cd01134 V_A-ATPase_A V/A-type 95.9 0.097 2.1E-06 46.7 10.2 98 177-279 156-273 (369)
358 TIGR01041 ATP_syn_B_arch ATP s 95.8 0.05 1.1E-06 50.5 8.7 103 177-280 140-258 (458)
359 PRK09825 idnK D-gluconate kina 95.8 0.0087 1.9E-07 48.3 3.4 24 179-202 4-27 (176)
360 PF01926 MMR_HSR1: 50S ribosom 95.8 0.0078 1.7E-07 44.7 2.9 21 181-201 2-22 (116)
361 PF03266 NTPase_1: NTPase; In 95.8 0.0088 1.9E-07 47.9 3.3 22 181-202 2-23 (168)
362 TIGR03497 FliI_clade2 flagella 95.8 0.033 7.2E-07 51.0 7.4 98 177-279 136-246 (413)
363 COG1763 MobB Molybdopterin-gua 95.8 0.01 2.2E-07 47.0 3.6 25 178-202 2-26 (161)
364 PRK08472 fliI flagellum-specif 95.8 0.044 9.5E-07 50.4 8.1 99 177-280 156-266 (434)
365 PRK13946 shikimate kinase; Pro 95.8 0.0098 2.1E-07 48.3 3.6 25 178-202 10-34 (184)
366 PRK06820 type III secretion sy 95.8 0.005 1.1E-07 56.6 2.0 98 177-279 162-272 (440)
367 cd02029 PRK_like Phosphoribulo 95.8 0.078 1.7E-06 45.5 9.0 78 180-260 1-84 (277)
368 COG1100 GTPase SAR1 and relate 95.8 0.0067 1.5E-07 50.4 2.6 24 179-202 6-29 (219)
369 TIGR02655 circ_KaiC circadian 95.8 0.083 1.8E-06 49.7 10.2 99 167-271 252-364 (484)
370 KOG0730 AAA+-type ATPase [Post 95.8 0.11 2.4E-06 49.5 10.7 52 155-209 434-496 (693)
371 PRK05342 clpX ATP-dependent pr 95.8 0.022 4.8E-07 52.3 6.1 49 154-202 70-132 (412)
372 COG3267 ExeA Type II secretory 95.7 0.12 2.6E-06 43.8 9.8 89 177-271 50-142 (269)
373 PF00406 ADK: Adenylate kinase 95.7 0.016 3.5E-07 45.3 4.6 20 183-202 1-20 (151)
374 cd04139 RalA_RalB RalA/RalB su 95.7 0.0081 1.7E-07 47.1 2.8 23 180-202 2-24 (164)
375 PF03215 Rad17: Rad17 cell cyc 95.7 0.021 4.6E-07 53.8 6.0 55 157-216 21-78 (519)
376 COG2842 Uncharacterized ATPase 95.7 0.046 9.9E-07 47.2 7.4 104 155-271 72-176 (297)
377 cd02117 NifH_like This family 95.7 0.0086 1.9E-07 49.8 2.9 24 179-202 1-24 (212)
378 PLN02796 D-glycerate 3-kinase 95.7 0.012 2.5E-07 52.4 3.8 26 177-202 99-124 (347)
379 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.0094 2E-07 49.6 3.2 25 177-201 29-53 (218)
380 PF03029 ATP_bind_1: Conserved 95.7 0.017 3.7E-07 49.0 4.7 20 183-202 1-20 (238)
381 PRK07764 DNA polymerase III su 95.7 0.017 3.8E-07 57.4 5.4 46 155-202 15-61 (824)
382 cd03116 MobB Molybdenum is an 95.7 0.012 2.5E-07 46.7 3.5 24 179-202 2-25 (159)
383 PRK09112 DNA polymerase III su 95.7 0.021 4.7E-07 51.2 5.5 47 155-202 23-69 (351)
384 KOG2228 Origin recognition com 95.7 0.044 9.6E-07 48.2 7.2 113 155-270 24-147 (408)
385 PRK14737 gmk guanylate kinase; 95.7 0.012 2.5E-07 48.0 3.5 26 177-202 3-28 (186)
386 PRK11608 pspF phage shock prot 95.7 0.018 3.8E-07 51.3 4.9 48 155-202 6-53 (326)
387 COG4088 Predicted nucleotide k 95.7 0.0078 1.7E-07 49.2 2.4 23 180-202 3-25 (261)
388 TIGR01420 pilT_fam pilus retra 95.7 0.024 5.2E-07 50.9 5.8 89 178-276 122-210 (343)
389 cd03225 ABC_cobalt_CbiO_domain 95.6 0.01 2.2E-07 49.2 3.2 25 177-201 26-50 (211)
390 PF10662 PduV-EutP: Ethanolami 95.6 0.01 2.2E-07 45.9 2.9 24 179-202 2-25 (143)
391 PRK07721 fliI flagellum-specif 95.6 0.017 3.6E-07 53.4 4.8 98 177-279 157-267 (438)
392 PRK14493 putative bifunctional 95.6 0.012 2.6E-07 50.9 3.6 24 179-202 2-25 (274)
393 PRK08356 hypothetical protein; 95.6 0.011 2.3E-07 48.5 3.2 21 178-198 5-25 (195)
394 PRK10733 hflB ATP-dependent me 95.6 0.039 8.5E-07 53.7 7.5 47 156-202 153-209 (644)
395 cd01122 GP4d_helicase GP4d_hel 95.6 0.15 3.3E-06 43.9 10.5 52 177-232 29-80 (271)
396 PRK13230 nitrogenase reductase 95.6 0.0095 2.1E-07 51.7 3.0 24 179-202 2-25 (279)
397 KOG0738 AAA+-type ATPase [Post 95.6 0.026 5.7E-07 50.5 5.6 47 156-202 213-269 (491)
398 PRK09099 type III secretion sy 95.6 0.045 9.7E-07 50.5 7.4 98 177-279 162-272 (441)
399 TIGR00416 sms DNA repair prote 95.6 0.049 1.1E-06 50.7 7.8 94 169-271 85-181 (454)
400 PRK14532 adenylate kinase; Pro 95.6 0.011 2.4E-07 48.0 3.2 22 181-202 3-24 (188)
401 PRK03731 aroL shikimate kinase 95.6 0.013 2.7E-07 46.9 3.5 24 179-202 3-26 (171)
402 TIGR01166 cbiO cobalt transpor 95.6 0.012 2.7E-07 47.9 3.4 25 177-201 17-41 (190)
403 TIGR03574 selen_PSTK L-seryl-t 95.6 0.01 2.3E-07 50.6 3.1 22 181-202 2-23 (249)
404 PF13604 AAA_30: AAA domain; P 95.6 0.026 5.7E-07 46.3 5.4 36 165-202 7-42 (196)
405 cd01428 ADK Adenylate kinase ( 95.6 0.012 2.5E-07 48.0 3.2 22 181-202 2-23 (194)
406 COG1136 SalX ABC-type antimicr 95.6 0.011 2.5E-07 49.3 3.2 24 177-200 30-53 (226)
407 PF02562 PhoH: PhoH-like prote 95.6 0.024 5.2E-07 46.8 5.0 53 159-216 4-56 (205)
408 PLN02348 phosphoribulokinase 95.6 0.02 4.4E-07 51.7 4.9 27 176-202 47-73 (395)
409 PRK06761 hypothetical protein; 95.6 0.03 6.5E-07 48.6 5.9 24 179-202 4-27 (282)
410 PRK13232 nifH nitrogenase redu 95.6 0.01 2.2E-07 51.4 3.0 24 179-202 2-25 (273)
411 PF13245 AAA_19: Part of AAA d 95.6 0.035 7.5E-07 38.1 5.1 24 178-201 10-34 (76)
412 TIGR00960 3a0501s02 Type II (G 95.5 0.013 2.7E-07 48.8 3.4 25 177-201 28-52 (216)
413 cd01124 KaiC KaiC is a circadi 95.5 0.037 8E-07 44.7 6.1 44 181-229 2-45 (187)
414 PRK06793 fliI flagellum-specif 95.5 0.12 2.7E-06 47.5 10.0 90 177-271 155-257 (432)
415 cd01862 Rab7 Rab7 subfamily. 95.5 0.0099 2.1E-07 47.1 2.6 22 180-201 2-23 (172)
416 PRK01184 hypothetical protein; 95.5 0.012 2.5E-07 47.7 3.1 19 179-197 2-20 (184)
417 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.013 2.7E-07 41.5 2.9 23 180-202 1-23 (99)
418 cd04155 Arl3 Arl3 subfamily. 95.5 0.01 2.3E-07 47.1 2.7 25 177-201 13-37 (173)
419 PRK13236 nitrogenase reductase 95.5 0.013 2.7E-07 51.5 3.4 27 176-202 4-30 (296)
420 PRK06305 DNA polymerase III su 95.5 0.024 5.1E-07 52.8 5.4 46 155-202 17-63 (451)
421 KOG0989 Replication factor C, 95.5 0.029 6.3E-07 48.7 5.4 62 155-219 36-98 (346)
422 PRK09302 circadian clock prote 95.5 0.13 2.8E-06 48.7 10.4 89 177-271 272-374 (509)
423 cd02022 DPCK Dephospho-coenzym 95.5 0.011 2.5E-07 47.7 2.9 21 180-200 1-21 (179)
424 KOG1514 Origin recognition com 95.5 0.2 4.3E-06 48.2 11.4 112 155-271 396-519 (767)
425 smart00173 RAS Ras subfamily o 95.5 0.013 2.7E-07 46.2 3.1 22 180-201 2-23 (164)
426 cd03297 ABC_ModC_molybdenum_tr 95.5 0.013 2.9E-07 48.6 3.4 24 177-201 23-46 (214)
427 cd02040 NifH NifH gene encodes 95.5 0.011 2.4E-07 50.9 2.9 24 179-202 2-25 (270)
428 cd01129 PulE-GspE PulE/GspE Th 95.5 0.084 1.8E-06 45.5 8.3 99 158-274 62-162 (264)
429 cd03229 ABC_Class3 This class 95.5 0.015 3.3E-07 46.9 3.5 25 177-201 25-49 (178)
430 cd03261 ABC_Org_Solvent_Resist 95.5 0.013 2.7E-07 49.5 3.1 25 177-201 25-49 (235)
431 PRK14953 DNA polymerase III su 95.5 0.026 5.6E-07 53.0 5.5 47 155-202 16-62 (486)
432 TIGR02315 ABC_phnC phosphonate 95.5 0.012 2.7E-07 49.8 3.1 25 177-201 27-51 (243)
433 TIGR02974 phageshock_pspF psp 95.5 0.023 4.9E-07 50.7 4.9 46 157-202 1-46 (329)
434 KOG0729 26S proteasome regulat 95.4 0.024 5.2E-07 48.2 4.7 48 155-202 177-235 (435)
435 PLN02674 adenylate kinase 95.4 0.064 1.4E-06 45.6 7.3 26 177-202 30-55 (244)
436 TIGR01817 nifA Nif-specific re 95.4 0.021 4.6E-07 54.4 4.9 49 154-202 195-243 (534)
437 cd03269 ABC_putative_ATPase Th 95.4 0.013 2.9E-07 48.5 3.2 25 177-201 25-49 (210)
438 PRK08099 bifunctional DNA-bind 95.4 0.014 3.1E-07 53.3 3.6 26 177-202 218-243 (399)
439 COG0194 Gmk Guanylate kinase [ 95.4 0.017 3.7E-07 46.5 3.6 25 178-202 4-28 (191)
440 cd03222 ABC_RNaseL_inhibitor T 95.4 0.015 3.3E-07 46.9 3.4 26 177-202 24-49 (177)
441 PRK00698 tmk thymidylate kinas 95.4 0.053 1.2E-06 44.5 6.7 25 178-202 3-27 (205)
442 PLN02165 adenylate isopentenyl 95.4 0.017 3.6E-07 51.2 3.8 26 177-202 42-67 (334)
443 cd03263 ABC_subfamily_A The AB 95.4 0.015 3.3E-07 48.5 3.5 25 177-201 27-51 (220)
444 cd03293 ABC_NrtD_SsuB_transpor 95.4 0.014 2.9E-07 48.8 3.2 26 177-202 29-54 (220)
445 PRK14529 adenylate kinase; Pro 95.4 0.081 1.8E-06 44.3 7.7 22 181-202 3-24 (223)
446 PRK04196 V-type ATP synthase s 95.4 0.056 1.2E-06 50.2 7.4 101 177-279 142-259 (460)
447 TIGR02673 FtsE cell division A 95.4 0.014 3E-07 48.5 3.2 25 177-201 27-51 (214)
448 PRK13541 cytochrome c biogenes 95.4 0.016 3.5E-07 47.4 3.5 25 177-201 25-49 (195)
449 cd04119 RJL RJL (RabJ-Like) su 95.4 0.013 2.8E-07 46.0 2.8 21 181-201 3-23 (168)
450 PRK07471 DNA polymerase III su 95.4 0.032 6.9E-07 50.4 5.6 47 154-202 18-65 (365)
451 cd03235 ABC_Metallic_Cations A 95.4 0.015 3.3E-07 48.2 3.3 25 177-201 24-48 (213)
452 TIGR00382 clpX endopeptidase C 95.4 0.033 7.1E-07 51.0 5.7 49 154-202 76-140 (413)
453 cd02026 PRK Phosphoribulokinas 95.4 0.013 2.8E-07 50.8 2.9 23 180-202 1-23 (273)
454 PRK10584 putative ABC transpor 95.4 0.016 3.5E-07 48.6 3.5 25 177-201 35-59 (228)
455 cd03260 ABC_PstB_phosphate_tra 95.4 0.017 3.6E-07 48.5 3.6 25 177-201 25-49 (227)
456 PRK06647 DNA polymerase III su 95.4 0.026 5.5E-07 54.0 5.2 47 155-202 16-62 (563)
457 cd03226 ABC_cobalt_CbiO_domain 95.4 0.016 3.4E-07 47.8 3.4 25 177-201 25-49 (205)
458 PF03193 DUF258: Protein of un 95.4 0.026 5.7E-07 44.6 4.4 35 163-202 25-59 (161)
459 cd03264 ABC_drug_resistance_li 95.3 0.013 2.9E-07 48.5 2.9 22 180-201 27-48 (211)
460 KOG0731 AAA+-type ATPase conta 95.3 0.017 3.8E-07 56.1 4.0 47 156-202 312-368 (774)
461 cd03256 ABC_PhnC_transporter A 95.3 0.016 3.5E-07 49.0 3.5 25 177-201 26-50 (241)
462 cd00544 CobU Adenosylcobinamid 95.3 0.16 3.5E-06 40.6 9.0 81 181-271 2-84 (169)
463 TIGR02211 LolD_lipo_ex lipopro 95.3 0.017 3.6E-07 48.2 3.5 25 177-201 30-54 (221)
464 cd03292 ABC_FtsE_transporter F 95.3 0.017 3.6E-07 48.0 3.4 25 177-201 26-50 (214)
465 cd03259 ABC_Carb_Solutes_like 95.3 0.017 3.7E-07 47.9 3.5 25 177-201 25-49 (213)
466 cd04163 Era Era subfamily. Er 95.3 0.016 3.4E-07 45.2 3.1 24 178-201 3-26 (168)
467 TIGR00455 apsK adenylylsulfate 95.3 0.02 4.4E-07 46.4 3.8 26 177-202 17-42 (184)
468 PLN02924 thymidylate kinase 95.3 0.066 1.4E-06 44.8 7.0 54 177-232 15-68 (220)
469 PRK14531 adenylate kinase; Pro 95.3 0.018 4E-07 46.7 3.6 23 180-202 4-26 (183)
470 cd04113 Rab4 Rab4 subfamily. 95.3 0.015 3.2E-07 45.6 3.0 22 181-202 3-24 (161)
471 cd03114 ArgK-like The function 95.3 0.015 3.2E-07 45.6 2.9 23 180-202 1-23 (148)
472 cd04159 Arl10_like Arl10-like 95.3 0.013 2.8E-07 45.4 2.6 21 181-201 2-22 (159)
473 KOG0651 26S proteasome regulat 95.3 0.023 4.9E-07 49.4 4.1 26 177-202 165-190 (388)
474 PRK08154 anaerobic benzoate ca 95.3 0.033 7.1E-07 49.2 5.4 26 177-202 132-157 (309)
475 PRK15177 Vi polysaccharide exp 95.3 0.017 3.7E-07 48.1 3.4 25 177-201 12-36 (213)
476 PRK13235 nifH nitrogenase redu 95.3 0.014 2.9E-07 50.6 2.9 24 179-202 2-25 (274)
477 CHL00060 atpB ATP synthase CF1 95.3 0.07 1.5E-06 49.7 7.6 102 177-280 160-282 (494)
478 cd03296 ABC_CysA_sulfate_impor 95.3 0.017 3.7E-07 48.9 3.5 25 177-201 27-51 (239)
479 TIGR03864 PQQ_ABC_ATP ABC tran 95.3 0.017 3.7E-07 48.8 3.5 25 177-201 26-50 (236)
480 cd04138 H_N_K_Ras_like H-Ras/N 95.3 0.016 3.4E-07 45.3 3.0 21 181-201 4-24 (162)
481 PRK13233 nifH nitrogenase redu 95.3 0.014 3E-07 50.5 3.0 24 179-202 3-26 (275)
482 PRK14490 putative bifunctional 95.3 0.038 8.2E-07 50.1 5.9 26 177-202 4-29 (369)
483 cd00876 Ras Ras family. The R 95.3 0.015 3.3E-07 45.2 3.0 21 181-201 2-22 (160)
484 PRK07960 fliI flagellum-specif 95.3 0.065 1.4E-06 49.4 7.3 99 177-280 174-285 (455)
485 PRK13768 GTPase; Provisional 95.3 0.017 3.8E-07 49.4 3.5 24 179-202 3-26 (253)
486 cd03265 ABC_DrrA DrrA is the A 95.3 0.018 3.9E-07 48.1 3.5 25 177-201 25-49 (220)
487 smart00175 RAB Rab subfamily o 95.3 0.014 3E-07 45.8 2.7 22 181-202 3-24 (164)
488 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.06 1.3E-06 46.3 6.8 40 177-219 35-74 (259)
489 PHA02530 pseT polynucleotide k 95.3 0.018 3.9E-07 50.5 3.6 24 179-202 3-26 (300)
490 cd03257 ABC_NikE_OppD_transpor 95.3 0.015 3.4E-07 48.6 3.1 25 177-201 30-54 (228)
491 COG0003 ArsA Predicted ATPase 95.3 0.042 9.2E-07 48.6 5.9 22 178-199 2-23 (322)
492 TIGR03324 alt_F1F0_F1_al alter 95.3 0.18 3.9E-06 47.1 10.2 99 177-280 161-274 (497)
493 cd00879 Sar1 Sar1 subfamily. 95.3 0.029 6.2E-07 45.4 4.6 25 177-201 18-42 (190)
494 PRK02496 adk adenylate kinase; 95.3 0.018 3.8E-07 46.7 3.3 23 180-202 3-25 (184)
495 PRK13538 cytochrome c biogenes 95.3 0.019 4E-07 47.4 3.5 25 177-201 26-50 (204)
496 TIGR03608 L_ocin_972_ABC putat 95.2 0.017 3.6E-07 47.7 3.2 25 177-201 23-47 (206)
497 TIGR00017 cmk cytidylate kinas 95.2 0.019 4.2E-07 48.0 3.5 24 179-202 3-26 (217)
498 cd00984 DnaB_C DnaB helicase C 95.2 0.22 4.7E-06 42.1 10.1 51 177-231 12-62 (242)
499 TIGR01650 PD_CobS cobaltochela 95.2 0.068 1.5E-06 47.3 7.0 37 162-202 52-88 (327)
500 cd03224 ABC_TM1139_LivF_branch 95.2 0.019 4E-07 48.0 3.5 25 177-201 25-49 (222)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-38 Score=304.98 Aligned_cols=259 Identities=35% Similarity=0.553 Sum_probs=220.0
Q ss_pred chhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhHH
Q 043249 15 RPILFYVGGEAKYIWGLKGNLDDLQTETENLIAKKLDLLNKVRLAEQQPRNRRTPTVELWFRRVEEIETKVETLQQERDQ 94 (287)
Q Consensus 15 ~~l~~~l~~~~~~~~~~~~~~~~L~~~L~~l~~~l~d~~~~~~~ae~~~~~~~~~~~~~Wl~~lr~~a~d~eD~ld~~~~ 94 (287)
+++.+++.+++..+.+.++++..|++.|..|+.+++| ++.++ .....+..|...+++++|++||.++.+..
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~--~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKR--DDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999 66655 56678899999999999999999998766
Q ss_pred Hhh----------------hhhccCccCccchhHhHHHHHHHHHHHHHHHHHHhCcccccccc-ccccccccccCCCCcc
Q 043249 95 EID----------------RLCLGGFCSKDLISSYDFGKKVEKLKEEVIKLWEKGEAMKEVYE-GVPEGAAVAMAVDRTI 157 (287)
Q Consensus 95 ~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 157 (287)
+.. +.|+.++|.+++...+.+++++-++.+.++.+...+. |..+.. ..+......+|..+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecccccccchhhcccCCCCccc
Confidence 542 2345567777888888889999999999988887665 655554 2222333444433333
Q ss_pred -cchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 043249 158 -VGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGF 236 (287)
Q Consensus 158 -vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~ 236 (287)
||.+..++++++.|.++ +..+++|+||||+||||||+.+||+...++.+|+.++||+||++|+...++++|+.+++.
T Consensus 160 ~VG~e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccHHHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 99999999999999988 449999999999999999999999993399999999999999999999999999999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccccCCCC
Q 043249 237 STDSWQGKSFEERASDITNTLKHKKFVLLSDDIWESEIDLTKLGVPLLTL 286 (287)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~~~~~~~i~~~~p~~ 286 (287)
....+...+.++++..|.+.|++|||||||||||+ +.+|+.|+.|||..
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~ 286 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSR 286 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccc-cccHHhcCCCCCCc
Confidence 66556666668999999999999999999999999 99999999999985
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.89 E-value=1.2e-22 Score=177.18 Aligned_cols=124 Identities=34% Similarity=0.598 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 043249 160 QESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTD 239 (287)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~ 239 (287)
||.++++|.+.|.....+.++|+|+||||+||||||+.+|++. .++.+|+.++|+.++..++...+++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 6889999999999855689999999999999999999999987 679999999999999999999999999999988543
Q ss_pred CC-CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCcccccccccccCCC
Q 043249 240 SW-QGKSFEERASDITNTLKHKKFVLLSDDIWESEIDLTKLGVPLLT 285 (287)
Q Consensus 240 ~~-~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~~~~~~~i~~~~p~ 285 (287)
.. ...+...+...|++.|.+++|||||||||+ ...|+.+..++|.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~ 125 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPS 125 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HC
T ss_pred ccccccccccccccchhhhccccceeeeeeecc-ccccccccccccc
Confidence 33 556788899999999999999999999999 8899998877764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=6.3e-15 Score=150.33 Aligned_cols=119 Identities=20% Similarity=0.332 Sum_probs=87.7
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEE---ecCC-----------
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSV---VSRE----------- 220 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~---vs~~----------- 220 (287)
+.+||++..++++..+|..+..+.++|+||||||+||||||+.+|+.. ..+|+..+|+. ++..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 468999999999999987666689999999999999999999999965 67899888763 1211
Q ss_pred CC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccccccc
Q 043249 221 PN-LMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWESEIDLTKLGVP 282 (287)
Q Consensus 221 ~~-~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~~~~~~~i~~~ 282 (287)
++ ...+++.++.++.... ...... ...+++.|++||+||||||||+ ..+|+.+...
T Consensus 261 ~~~~~~l~~~~l~~il~~~-~~~~~~----~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~ 317 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKK-DIKIYH----LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQ 317 (1153)
T ss_pred cchhHHHHHHHHHHHhCCC-CcccCC----HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhh
Confidence 11 1245555555543211 111111 1457888999999999999999 8889888653
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=4.1e-10 Score=102.72 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=86.7
Q ss_pred CCcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 231 (287)
++.++||++++++|...|... +.....+-|+|++|+||||+++.++++. ......-..+++......+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 467899999999999988543 2344567899999999999999999987 3332223456666666667889999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 232 KRIGFSTDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
.++.....+....+..++...+.+.+. ++..+||||+++.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~ 149 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINY 149 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH
Confidence 998752222233456677777888776 4568999999986
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=2.9e-09 Score=96.13 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=83.6
Q ss_pred CCcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCC---CEEEEEEecCCCCHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF---DVVIWSVVSREPNLMQIQE 228 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F---~~~~wv~vs~~~~~~~i~~ 228 (287)
++.++||+++++.|...|.+. +.....+.|+|++|+|||++++.+++...+..... -..+|+......+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 457899999999999998752 23456789999999999999999998751111111 1356777766667888999
Q ss_pred HHHHHhCC--CCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 229 DIGKRIGF--STDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 229 ~i~~~~~~--~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
.|+.++.. ...+....+..++...+.+.+. +++++||||++..
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 99999841 1111123345556666666664 5689999999987
No 6
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.99 E-value=1.6e-09 Score=92.12 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCCCHH------H
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE--PNLMQIQEDIGKRIGFSTDSWQGKSFE------E 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~i~~~~~~~~~~~~~~~~~------~ 248 (287)
+...++|+|++|+|||||++.+|+.. .. .+|+.++|++++++ +++.++++.|...+-.... +..... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHHH
Confidence 55788999999999999999999987 43 39999999998887 8999999999443222111 111111 1
Q ss_pred HHHHHHHH-hCCCcEEEEEeCCCCcccccccc
Q 043249 249 RASDITNT-LKHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 l~~~l~~~-l~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+..... -.+++.+|++|++..-....+.+
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev 122 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRLARAYNTV 122 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhc
Confidence 12222222 24899999999997633334443
No 7
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.89 E-value=4.2e-09 Score=93.73 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=63.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCCCCCHHHH-----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP--NLMQIQEDIGKRIGFSTDSWQGKSFEER----- 249 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~i~~~~~~~~~~~~~~~~~~l----- 249 (287)
+-.-..|+|++|+|||||++.||+.. .. .||++++||++++.+ .+.++++.|...+-.+ ..+.......
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCCHHHHHHHHHH
Confidence 44667899999999999999999987 43 399999999999998 7888888887422211 1111111111
Q ss_pred HHHHHHH--hCCCcEEEEEeCCCC
Q 043249 250 ASDITNT--LKHKKFVLLSDDIWE 271 (287)
Q Consensus 250 ~~~l~~~--l~~kr~LlVLDDvw~ 271 (287)
.-...++ -.++..||++|++..
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111222 358999999999965
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.84 E-value=9.7e-08 Score=82.46 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=60.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
...++.|+|++|+|||||++.+++.. .. ..+ ...|+ ++...+..+++..|+..++.+.. ..+...+...|...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHH
Confidence 45688999999999999999999976 31 221 22333 33346788899999998876432 23333333344332
Q ss_pred -----hCCCcEEEEEeCCCC
Q 043249 257 -----LKHKKFVLLSDDIWE 271 (287)
Q Consensus 257 -----l~~kr~LlVLDDvw~ 271 (287)
..+++++||+||++.
T Consensus 115 l~~~~~~~~~~vliiDe~~~ 134 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQN 134 (269)
T ss_pred HHHHHhCCCCeEEEEECccc
Confidence 257899999999988
No 9
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.84 E-value=1e-08 Score=78.57 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=66.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccc--cCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSE--EHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDIT 254 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v--~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~ 254 (287)
+.+++.|+|.+|+|||++++.+.+..... ...-...+|+.++...+...+...|+..++..... ..+...+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 45788999999999999999998875110 00133567999888889999999999999874332 356777888888
Q ss_pred HHhCCCc-EEEEEeCCCC
Q 043249 255 NTLKHKK-FVLLSDDIWE 271 (287)
Q Consensus 255 ~~l~~kr-~LlVLDDvw~ 271 (287)
+.+...+ .+||+||+..
T Consensus 81 ~~l~~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADH 98 (131)
T ss_dssp HHHHHCTEEEEEEETTHH
T ss_pred HHHHhcCCeEEEEeChHh
Confidence 8887544 5999999865
No 10
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.79 E-value=3.1e-08 Score=88.68 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=65.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE--PNLMQIQEDIGKRIGFSTDSWQGKSFEERAS--- 251 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~--- 251 (287)
+-..++|+|.+|+|||||++.+++.. . ..||+..+||.++++ .++.++++.|+..+-.............++.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 55788999999999999999999986 3 348999999999976 7899999999654433211111111111111
Q ss_pred -HHHHH-hCCCcEEEEEeCCCC
Q 043249 252 -DITNT-LKHKKFVLLSDDIWE 271 (287)
Q Consensus 252 -~l~~~-l~~kr~LlVLDDvw~ 271 (287)
..... -.+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 12222 348999999999975
No 11
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.78 E-value=2.4e-08 Score=80.99 Aligned_cols=46 Identities=26% Similarity=0.436 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHHh-ccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 157 IVGQESILDQVWRCIT-EQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++||+++++++...|. ..+...+.+.|+|.+|+|||+|.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999994 223467899999999999999999999887
No 12
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.1e-07 Score=81.68 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=87.5
Q ss_pred CCcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 231 (287)
+..+.+|+++++++...|..- +..+.-+-|+|.+|+|||+.++.+...........+ .+.|.+-...++.+++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 345899999999999988642 223344889999999999999999998732222333 67888888889999999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 232 KRIGFSTDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
.+++. .+....+..+....+.+.+. ++.+++|||++..
T Consensus 95 ~~~~~--~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 95 NKLGK--VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHcCC--CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 99873 12234555666677777776 5899999999976
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.64 E-value=3.9e-07 Score=70.31 Aligned_cols=58 Identities=26% Similarity=0.326 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC
Q 043249 158 VGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE 220 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~ 220 (287)
+|++..+..+...+... ..+.+.|+|.+|+|||||++.+++.. . ..-...+++..+..
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhh
Confidence 36788888888888765 56788899999999999999999976 2 22234556655543
No 14
>PTZ00202 tuzin; Provisional
Probab=98.60 E-value=6.6e-07 Score=80.70 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=68.8
Q ss_pred CCcccchHHHHHHHHHHHhccC-CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQK-KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
.+.|+||+.+...+...|...+ ....++.|.|++|+|||||++.+.... ++ ....+... +..++++.|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-----~~-~qL~vNpr---g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-----GM-PAVFVDVR---GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-----Cc-eEEEECCC---CHHHHHHHHHH
Confidence 5678999999999999886532 345699999999999999999998755 22 22222222 67999999999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHh-----C-CCcEEEEE
Q 043249 233 RIGFSTDSWQGKSFEERASDITNTL-----K-HKKFVLLS 266 (287)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~l-----~-~kr~LlVL 266 (287)
.++.+.. ....++...|.+.| . +++-+||+
T Consensus 332 ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 332 ALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9997321 22233444444333 2 56666665
No 15
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.55 E-value=9.2e-07 Score=80.53 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=73.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRI 234 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~ 234 (287)
.++++.+...+.+...|... +.+.++|++|+||||+|+.+.+.. ....+|+.+.||.+++.++..+++..+.-.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~- 248 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN- 248 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-
Confidence 45688899999999988754 567789999999999999999887 555678899999999998877766533110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 235 GFSTDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
..+..-.+ ....+.+...-. +++|+||+|++-.
T Consensus 249 ---~vgy~~~~-G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 249 ---GVGFRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred ---CCCeEecC-chHHHHHHHHHhcccCCcEEEEehhhc
Confidence 00110000 012222333322 4789999999975
No 16
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.52 E-value=1.7e-07 Score=78.72 Aligned_cols=44 Identities=34% Similarity=0.491 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 157 IVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 689999999999999876 67889999999999999999998865
No 17
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.40 E-value=4.2e-06 Score=81.27 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=77.6
Q ss_pred CCcccchHHHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHhccc--cCCCCE--EEEEEecCCCCHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSE--EHDFDV--VIWSVVSREPNLMQI 226 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v--~~~F~~--~~wv~vs~~~~~~~i 226 (287)
++.++||++++++|...|.+. .....++-|+|++|+|||++++.|....... ...... .++|....-.++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 456889999999999988652 2233677899999999999999998765211 112222 345554445578889
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhC---CCcEEEEEeCCCC
Q 043249 227 QEDIGKRIGFSTDSWQGKSFEERASDITNTLK---HKKFVLLSDDIWE 271 (287)
Q Consensus 227 ~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~kr~LlVLDDvw~ 271 (287)
...|..++.... +....+.......+...+. ....+||||||..
T Consensus 834 YqvI~qqL~g~~-P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 834 YQVLYKQLFNKK-PPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHHHHHHHcCCC-CCccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 999999885422 2223333445555555542 2346999999875
No 18
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=4.3e-05 Score=73.52 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=77.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCC---EEEEEEecCC---CCHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFD---VVIWSVVSRE---PNLMQIQE 228 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~---~~~wv~vs~~---~~~~~i~~ 228 (287)
+.++|.+..+..+.+.+... ....+.|+|++|+||||||+.+++.. .....+. ...|+.++.. .+...+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 45789999888888777544 56679999999999999999999876 4333331 2456665432 12222221
Q ss_pred HH---------------HHHhCCCC----------------CCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCc-cccc
Q 043249 229 DI---------------GKRIGFST----------------DSWQGKSFEERASDITNTLKHKKFVLLSDDIWES-EIDL 276 (287)
Q Consensus 229 ~i---------------~~~~~~~~----------------~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~-~~~~ 276 (287)
.+ +...+... +.....+. ..+..|.+.+++++++++.|+.|.+ ...|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-LLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-HHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 11 11112100 01122232 3567889999999999998877762 2346
Q ss_pred ccccccCC
Q 043249 277 TKLGVPLL 284 (287)
Q Consensus 277 ~~i~~~~p 284 (287)
+.++..|+
T Consensus 310 ~~ik~~~~ 317 (615)
T TIGR02903 310 KYIKKLFE 317 (615)
T ss_pred hhhhhhcc
Confidence 66654433
No 19
>PF05729 NACHT: NACHT domain
Probab=98.39 E-value=1.9e-06 Score=68.28 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=52.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCC----CCEEEEEEecCCCCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHD----FDVVIWSVVSREPNLM---QIQEDIGKRIGFSTDSWQGKSFEERAS 251 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~~~~~~~~~~~~~~~~l~~ 251 (287)
+++.|+|.+|+||||+++.+.... ..... +...+|.+.+...... .+...|..+.... ......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---
Confidence 478899999999999999999877 33332 4566777766543332 3444444443321 111111
Q ss_pred HHHHH-hCCCcEEEEEeCCCC
Q 043249 252 DITNT-LKHKKFVLLSDDIWE 271 (287)
Q Consensus 252 ~l~~~-l~~kr~LlVLDDvw~ 271 (287)
.+... -..++++||||++.+
T Consensus 72 ~~~~~~~~~~~~llilDglDE 92 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDE 92 (166)
T ss_pred HHHHHHHcCCceEEEEechHh
Confidence 12222 247899999999976
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.3e-06 Score=77.40 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=54.9
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKR 233 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 233 (287)
+.+++|-+..+.++ +..+ .+.-.-.||++|+||||||+.+.... ..+| ..+|...+-.+=++.|++.
T Consensus 29 Q~HLlg~~~~lrr~---v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 29 QEHLLGEGKPLRRA---VEAG--HLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIEE 95 (436)
T ss_pred hHhhhCCCchHHHH---HhcC--CCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHHH
Confidence 34445554444444 4444 66666799999999999999998865 3344 4455544444444444443
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 234 IGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.. .....+++.+|++|+|..
T Consensus 96 a~------------------~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 96 AR------------------KNRLLGRRTILFLDEIHR 115 (436)
T ss_pred HH------------------HHHhcCCceEEEEehhhh
Confidence 21 122338899999999965
No 21
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.35 E-value=3.3e-06 Score=74.32 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=84.0
Q ss_pred CCcccchHHHHHHHHHHHhccCC-CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKK-NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
++.+.+|+.+...+..++...+. -+..+-|+|-.|.|||.+.+.+++.. .. ..+|+++-..|+..-++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-CC-----cceeeehHHhccHHHHHHHHHH
Confidence 56788999999999998876654 34566899999999999999999976 32 3589999999999999999999
Q ss_pred HhCCCC-CCCCCC----CHHHHHHHHHH--HhC--CCcEEEEEeCCCCccccccc
Q 043249 233 RIGFST-DSWQGK----SFEERASDITN--TLK--HKKFVLLSDDIWESEIDLTK 278 (287)
Q Consensus 233 ~~~~~~-~~~~~~----~~~~l~~~l~~--~l~--~kr~LlVLDDvw~~~~~~~~ 278 (287)
+.+... .+.... +.......+.+ ... ++.++||||++.. -.+.+.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~-lrD~~a 132 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA-LRDMDA 132 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh-hhccch
Confidence 986322 111111 11122223333 222 4689999999976 444443
No 22
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.35 E-value=1.8e-06 Score=75.64 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=61.6
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKR 233 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 233 (287)
+..++|.+.-+..+ +..+ .+.-+-+||++|+||||||+.+.+.. +.+- ..||..|....-.+=+++|+++
T Consensus 143 Q~hlv~q~gllrs~---ieq~--~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 143 QSHLVGQDGLLRSL---IEQN--RIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred hhhhcCcchHHHHH---HHcC--CCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHH
Confidence 34445544333333 3334 56667799999999999999998865 2221 5678888877777777777776
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 234 IGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
... ...+.++|-+|.+|+|..
T Consensus 213 aq~-----------------~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 213 AQN-----------------EKSLTKRKTILFIDEIHR 233 (554)
T ss_pred HHH-----------------HHhhhcceeEEEeHHhhh
Confidence 432 123457888999999854
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.34 E-value=1.5e-06 Score=79.79 Aligned_cols=46 Identities=33% Similarity=0.450 Sum_probs=36.2
Q ss_pred CcccchHHHHHH---HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQ---VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..+.. +.+++..+ ....+.++|++|+||||||+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347888777555 66666655 56678889999999999999998865
No 24
>PRK08118 topology modulation protein; Reviewed
Probab=98.18 E-value=1.1e-06 Score=70.46 Aligned_cols=51 Identities=35% Similarity=0.631 Sum_probs=35.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccc-CCCCEEE----EEEecCCCCHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEE-HDFDVVI----WSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~-~~F~~~~----wv~vs~~~~~~~i~~~i~~ 232 (287)
-|.|+|++|+||||||+.+++.. ... -+||..+ |..+++. ....++++++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~ 58 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKPNWEGVPKE-EQITVQNELVK 58 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcCCCHH-HHHHHHHHHhc
Confidence 58899999999999999999987 444 4688777 4444432 33344444443
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.10 E-value=3e-05 Score=68.27 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=67.7
Q ss_pred CcccchHHHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 231 (287)
..|+|+++.++.|..++... ......+-++|++|+|||+||+.+.+.. . ..| ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchh-HHHHH
Confidence 35899999999998888632 2345667899999999999999998876 2 222 1222221112222 33334
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCccccc
Q 043249 232 KRIGFST----DSWQGKSFEERASDITNTLKHKKFVLLSDDIWESEIDL 276 (287)
Q Consensus 232 ~~~~~~~----~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~~~~~ 276 (287)
..++... +.....+. .....+...+.+.+..+|+++..+ ...|
T Consensus 77 ~~~~~~~vl~iDEi~~l~~-~~~e~l~~~~~~~~~~~v~~~~~~-~~~~ 123 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSP-AVEELLYPAMEDFRLDIVIGKGPS-ARSV 123 (305)
T ss_pred HhcccCCEEEEehHhhhCH-HHHHHhhHHHhhhheeeeeccCcc-ccce
Confidence 4443211 00111111 234557777778888899998776 4443
No 26
>PF13173 AAA_14: AAA domain
Probab=98.06 E-value=1.1e-05 Score=61.75 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=48.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTL 257 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 257 (287)
.+++.|.|+.|+|||||++.++.+. . .....++++.......... ..+ +.+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999876 2 3344556555443111000 000 223334444
Q ss_pred CCCcEEEEEeCCCCcccccccc
Q 043249 258 KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 258 ~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..++.+|+||+|-. ..+|...
T Consensus 59 ~~~~~~i~iDEiq~-~~~~~~~ 79 (128)
T PF13173_consen 59 KPGKKYIFIDEIQY-LPDWEDA 79 (128)
T ss_pred ccCCcEEEEehhhh-hccHHHH
Confidence 44778899999988 6666543
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.00 E-value=6.7e-05 Score=75.68 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEec-CCCCHHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVS-REPNLMQIQEDIGK 232 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs-~~~~~~~i~~~i~~ 232 (287)
.+.++-|..-.+ .|.. ....+++.|.|++|.||||++....... ..++|+++. .+.++..+...++.
T Consensus 13 ~~~~~~R~rl~~----~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 13 LHNTVVRERLLA----KLSG-ANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred ccccCcchHHHH----HHhc-ccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHH
Confidence 345566664444 3432 2367899999999999999999987532 268999996 45566777777777
Q ss_pred HhCCCCCC-----------CCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 233 RIGFSTDS-----------WQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 233 ~~~~~~~~-----------~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
.+...... ....+...+...+...+. +.+++|||||+..
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~ 132 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHL 132 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCc
Confidence 77421110 011223333344444443 6899999999965
No 28
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.99 E-value=2.1e-05 Score=76.65 Aligned_cols=45 Identities=40% Similarity=0.606 Sum_probs=34.9
Q ss_pred cccchHHHHH---HHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILD---QVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++|.+..+. .+.+.+..+ ....+-++|++|+||||||+.+++..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4788887664 455555554 56677899999999999999999865
No 29
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.98 E-value=4.1e-05 Score=58.25 Aligned_cols=87 Identities=22% Similarity=0.045 Sum_probs=47.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTL 257 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 257 (287)
...+.|+|.+|+||||+++.+.... . ......+.+..+........... ...... .............+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL-G--PPGGGVIYIDGEDILEEVLDQLL-LIIVGG---KKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc-C--CCCCCEEEECCEEccccCHHHHH-hhhhhc---cCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998866 2 22223445544443222222211 011111 111222333333444444
Q ss_pred CCC-cEEEEEeCCCC
Q 043249 258 KHK-KFVLLSDDIWE 271 (287)
Q Consensus 258 ~~k-r~LlVLDDvw~ 271 (287)
+.. ..+|++|++..
T Consensus 75 ~~~~~~viiiDei~~ 89 (148)
T smart00382 75 RKLKPDVLILDEITS 89 (148)
T ss_pred HhcCCCEEEEECCcc
Confidence 443 49999999988
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.94 E-value=0.0001 Score=65.64 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=65.5
Q ss_pred CcccchHHHHHHHHHHHhc---cCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITE---QKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 231 (287)
.+++|+++.++.+..++.. .......+-++|++|+||||||+.+.+.. . ..| .++..+ ......-+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecc-cccChHHHHHHH
Confidence 4589999999998877753 23346678899999999999999999976 3 222 112211 122223344455
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 232 KRIGFST----DSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 232 ~~~~~~~----~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
..+.... +.....+ ....+.+...+.+.+..+++|+..+
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~ 140 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPA 140 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcc
Confidence 5443211 0001111 1223446667777788888888665
No 31
>PRK07261 topology modulation protein; Provisional
Probab=97.92 E-value=3.9e-05 Score=61.69 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=25.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcccc-CCCCEEEEE
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEE-HDFDVVIWS 215 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~-~~F~~~~wv 215 (287)
.|.|+|++|+||||||+.+.... ... -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEec
Confidence 47899999999999999997764 222 245555563
No 32
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=0.00025 Score=61.41 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=78.4
Q ss_pred CcccchH---HHHHHHHHHHhccC-CCceEEEEEccCCCcHHHHHHHHHHHhccccCCC----CEEEEEEecCCCCHHHH
Q 043249 155 RTIVGQE---SILDQVWRCITEQK-KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF----DVVIWSVVSREPNLMQI 226 (287)
Q Consensus 155 ~~~vGr~---~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F----~~~~wv~vs~~~~~~~i 226 (287)
+..+|.. ..++++.++|..+. ....-+.|||..|.|||++++...... -....= -+++.|.....++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHH
Confidence 3456643 44566666665542 344668999999999999999998765 221111 15667788889999999
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhC-CCcEEEEEeCCCC
Q 043249 227 QEDIGKRIGFSTDSWQGKSFEERASDITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 227 ~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVLDDvw~ 271 (287)
...|+.+++.+.. ...+...+.......|+ -+-=+||+|++.+
T Consensus 113 Y~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 113 YSAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 9999999998643 23344555555555665 3556899999976
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=97.90 E-value=7.6e-05 Score=69.98 Aligned_cols=48 Identities=31% Similarity=0.496 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+.+|+..- +...+.+-|+|++|+||||+|+.+.+..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45899999999999998642 2236788999999999999999999875
No 34
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.89 E-value=4.4e-05 Score=64.05 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC
Q 043249 160 QESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR 219 (287)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 219 (287)
.+..++.+.+++... ....+.|+|..|+||||||+.+++.. . ......+++.++.
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~-~--~~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAA-E--ERGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHH-H--hcCCcEEEEeHHH
Confidence 445667777665543 56788899999999999999999876 2 2333445555543
No 35
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.85 E-value=5.1e-05 Score=75.55 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++||+.+++.+++.|... ...-+.++|.+|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999876 33344599999999999999997765
No 36
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.85 E-value=0.00013 Score=65.22 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCE-EEEEEecCC-CCHHHHHHHHHHHhCCCCCC
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDV-VIWSVVSRE-PNLMQIQEDIGKRIGFSTDS 240 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~-~~wv~vs~~-~~~~~i~~~i~~~~~~~~~~ 240 (287)
...++++.+..=. +-.-+.|+|..|+|||||++.+.+.. . .++=+. ++|+.+.+. ..+.++.+.+...+..+...
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i-~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAV-A-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHH-H-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 3445777776432 33456899999999999999988865 2 223344 578788764 45778888888766543211
Q ss_pred CCCCC---HHHHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 241 WQGKS---FEERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 241 ~~~~~---~~~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..... .......+.+++ .+++.+||+|++..-......+
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei 239 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNE 239 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhh
Confidence 11111 111112223333 3899999999996522334444
No 37
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.84 E-value=0.00069 Score=67.19 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=39.2
Q ss_pred CCcccchHHHHHHHHHHHhcc----CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ----KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++|.+..++.|.+++... ..+..++.++|++|+||||+|+.+.+..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999998876422 2244589999999999999999999876
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=97.84 E-value=0.0001 Score=62.25 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=28.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEec
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVS 218 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 218 (287)
..+.+.++|.+|+|||+|++.+.+.. . .+.....|++++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~-~--~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY-L--LNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCCeEEeeHH
Confidence 34568899999999999999999976 2 122344666664
No 39
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.84 E-value=5.9e-05 Score=63.56 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEe
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVV 217 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v 217 (287)
.--+.|+|..|+|||||...+.... ...|.++.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 3467899999999999999998865 678977776654
No 40
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.83 E-value=0.0001 Score=72.60 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++||+++++++++.|... ...-+-++|.+|+|||++|+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999988766 33445699999999999999998865
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.80 E-value=2.8e-05 Score=64.39 Aligned_cols=48 Identities=27% Similarity=0.429 Sum_probs=34.0
Q ss_pred CcccchHHHHHHHHHHHh---ccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT---EQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++||.++-+..+.-++. ...+.+..+-.||++|+||||||..+.+..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 468999988877654443 233467888899999999999999999976
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.80 E-value=4.7e-05 Score=57.88 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|-|+|.+|+||||+|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999986
No 43
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00059 Score=64.92 Aligned_cols=106 Identities=15% Similarity=0.256 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccccc------cccc--ccccccC-------CCCcccchHHHHHHHHHHHh----cc
Q 043249 114 DFGKKVEKLKEEVIKLWEKGEAMKEVYE------GVPE--GAAVAMA-------VDRTIVGQESILDQVWRCIT----EQ 174 (287)
Q Consensus 114 ~~~~~i~~~~~~l~~l~~~~~~~~~~~~------~~~~--~~~~~~~-------~~~~~vGr~~~~~~l~~~L~----~~ 174 (287)
...+.+.+-..+++.+......|+..-+ ..|. .+.+... .+.+-+|+++-+++|++++- .+
T Consensus 355 ~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrg 434 (906)
T KOG2004|consen 355 HVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRG 434 (906)
T ss_pred HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcc
Confidence 3445566666666666655555654322 1121 1111111 13445999999999999884 23
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHH
Q 043249 175 KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQ 225 (287)
Q Consensus 175 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~ 225 (287)
..+-+++..+|++|||||.+++.|.... ...| +-++|+.-.|..+
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAe 479 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAE 479 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHh
Confidence 4577999999999999999999999876 3344 2345555444433
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.73 E-value=0.00012 Score=66.18 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhcc----C-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ----K-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|+++.+++|.+.+... + ...+-+.++|++|+|||+||+.+.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999998876421 0 234568899999999999999999965
No 45
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.72 E-value=0.00016 Score=65.82 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++.|+++.++++.+.+... -...+-|.++|++|+|||++|+.+.+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 45789999999988876321 1245668899999999999999999875
No 46
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.00052 Score=62.28 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=76.2
Q ss_pred CCcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 231 (287)
+..++||+.++..+-+++... ....+-+-|.|.+|.|||.+...++.+.......| +++.+..-.=.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHHHH
Confidence 456899999999999988653 33667788899999999999999999872222222 334443332235677888888
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhCCC--cEEEEEeCCCC
Q 043249 232 KRIGFSTDSWQGKSFEERASDITNTLKHK--KFVLLSDDIWE 271 (287)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~k--r~LlVLDDvw~ 271 (287)
..+-.... ...+..+....+.++..+. -||+|||++..
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 87721111 1112244556666666643 59999999864
No 47
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.66 E-value=0.00078 Score=66.60 Aligned_cols=49 Identities=29% Similarity=0.410 Sum_probs=40.6
Q ss_pred CCcccchHHHHHHHHHHHhcc----CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ----KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.+.+|.+..++.|+++|... ..+..++.++|++|+||||+++.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455799999999999988631 2355689999999999999999998865
No 48
>PRK08116 hypothetical protein; Validated
Probab=97.66 E-value=0.00058 Score=58.98 Aligned_cols=75 Identities=27% Similarity=0.247 Sum_probs=46.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhC
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLK 258 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 258 (287)
.-+-++|..|+|||.||..+++.. .. +-..+++++ ...++..|....... ...+... +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~~--~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~~----~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-IE--KGVPVIFVN------FPQLLNRIKSTYKSS----GKEDENE----IIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEE------HHHHHHHHHHHHhcc----ccccHHH----HHHHhc
Confidence 357899999999999999999987 22 223445554 345666665554321 1112222 334444
Q ss_pred CCcEEEEEeCCCC
Q 043249 259 HKKFVLLSDDIWE 271 (287)
Q Consensus 259 ~kr~LlVLDDvw~ 271 (287)
+-. ||||||+-.
T Consensus 178 ~~d-lLviDDlg~ 189 (268)
T PRK08116 178 NAD-LLILDDLGA 189 (268)
T ss_pred CCC-EEEEecccC
Confidence 444 899999943
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00023 Score=62.98 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=54.3
Q ss_pred cccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhc---cccCCCCEEEEEEe-cCCCCHHHHHHHHH
Q 043249 156 TIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFC---SEEHDFDVVIWSVV-SREPNLMQIQEDIG 231 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~---~v~~~F~~~~wv~v-s~~~~~~~i~~~i~ 231 (287)
+++|.+..++.+.+++..+ .-.+.+-++|+.|+||||+|+.++.... ....|+|...|... +....... .++++
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 5789999999999988765 1345778999999999999999988531 13457787777653 44445555 34455
Q ss_pred HHh
Q 043249 232 KRI 234 (287)
Q Consensus 232 ~~~ 234 (287)
+.+
T Consensus 83 ~~~ 85 (313)
T PRK05564 83 EEV 85 (313)
T ss_pred HHH
Confidence 544
No 50
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.64 E-value=0.0003 Score=70.16 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++||+.++.++++.|... ...-+-++|.+|+||||+|+.+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999998776 33444599999999999999998865
No 51
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.61 E-value=0.00043 Score=58.15 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHH----hCCCCCCCCCCCHHH---
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKR----IGFSTDSWQGKSFEE--- 248 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~----~~~~~~~~~~~~~~~--- 248 (287)
..-.++.|+|.+|+||||++..+.... ...-..++|++.. .++...+.+ +... +...-.-....+..+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSE 95 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHH
Confidence 356899999999999999999987765 2234678899887 666655432 3322 100000001223333
Q ss_pred HHHHHHHHhCCCcEEEEEeCCC
Q 043249 249 RASDITNTLKHKKFVLLSDDIW 270 (287)
Q Consensus 249 l~~~l~~~l~~kr~LlVLDDvw 270 (287)
....+...+..+--++|+|.+-
T Consensus 96 ~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 96 AIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHHhcccEEEEeCcH
Confidence 3344444454677799999984
No 52
>PRK08727 hypothetical protein; Validated
Probab=97.61 E-value=0.00035 Score=59.08 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC
Q 043249 156 TIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR 219 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 219 (287)
.++|-.+....+....... ....+.|+|..|+|||+|++.+.+.. . .+.....++++.+
T Consensus 21 f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~~~-~--~~~~~~~y~~~~~ 79 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCAAA-E--QAGRSSAYLPLQA 79 (233)
T ss_pred ccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEeHHH
Confidence 3444444444443333322 33568999999999999999998876 2 2223445666543
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=97.61 E-value=0.00054 Score=60.79 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=37.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.++.++.|..++..+ +.+.+-++|++|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35789888888888777655 45557799999999999999998864
No 54
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.60 E-value=0.0001 Score=65.55 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=42.1
Q ss_pred CCcccchHHHHHHHHHHHhcc----CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ----KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++|.++.++++++++... +...+++.++|++|+||||||+.+.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999753 3356899999999999999999998876
No 55
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.60 E-value=0.00073 Score=59.67 Aligned_cols=46 Identities=30% Similarity=0.405 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|++..++.+..++... ..+.+-++|.+|+||||+++.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999988765 45567999999999999999998875
No 56
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.60 E-value=0.00046 Score=58.01 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=56.7
Q ss_pred CCcccchHHHHHHHHHHHhc--cCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITE--QKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 231 (287)
-+.++|.+..++.|++--.. ......-+-+||..|+|||+|++.+.+.. ..+. ++ -|.|+++
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y-~~~G---LR-lIev~k~----------- 89 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY-ADQG---LR-LIEVSKE----------- 89 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH-hhcC---ce-EEEECHH-----------
Confidence 35689999998888764321 12245666789999999999999999876 3222 22 2233321
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 232 KRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.-.+...+.+.|+. +..||+|.+||+.=
T Consensus 90 ----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsF 117 (249)
T PF05673_consen 90 ----------DLGDLPELLDLLRD--RPYKFILFCDDLSF 117 (249)
T ss_pred ----------HhccHHHHHHHHhc--CCCCEEEEecCCCC
Confidence 11233344444442 35799999999843
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.59 E-value=0.00036 Score=69.79 Aligned_cols=46 Identities=15% Similarity=0.402 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++||+.+++++++.|... ...-+-++|.+|+||||+|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999876 34445599999999999999998865
No 58
>PRK12377 putative replication protein; Provisional
Probab=97.57 E-value=0.00053 Score=58.40 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=45.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
....+.++|.+|+|||+||..+.+.. . .....+++++++ +++..|-..... ..+... +.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l-~--~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~~----~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL-L--AKGRSVIVVTVP------DVMSRLHESYDN------GQSGEK----FLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCCeEEEEHH------HHHHHHHHHHhc------cchHHH----HHHH
Confidence 34678899999999999999999987 2 223334555543 455555443321 111222 2222
Q ss_pred hCCCcEEEEEeCCCC
Q 043249 257 LKHKKFVLLSDDIWE 271 (287)
Q Consensus 257 l~~kr~LlVLDDvw~ 271 (287)
+ .+-=||||||+-.
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 3 3566899999944
No 59
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.57 E-value=7.2e-05 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
||.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 60
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.56 E-value=0.00035 Score=65.33 Aligned_cols=48 Identities=31% Similarity=0.383 Sum_probs=37.0
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.+..++++.+.+.-. -...+-+-++|++|+|||++|+.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 34678999888887775321 1234568899999999999999999976
No 61
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00039 Score=68.27 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++||+.+++++++.|... ...-+-++|.+|+|||++|+.+....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999988875 23334589999999999999998764
No 62
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00052 Score=56.90 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=56.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHh-CCCCCC---CCCCCHH---H
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRI-GFSTDS---WQGKSFE---E 248 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~-~~~~~~---~~~~~~~---~ 248 (287)
..-+++-|+|.+|+|||+++..+.... ......++|++... +++..+.+. +++. ...... ....+.. .
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHH
Confidence 356899999999999999999987654 23456789999876 777665553 3221 000000 0112222 2
Q ss_pred HHHHHHHHhCC-CcEEEEEeCCCC
Q 043249 249 RASDITNTLKH-KKFVLLSDDIWE 271 (287)
Q Consensus 249 l~~~l~~~l~~-kr~LlVLDDvw~ 271 (287)
....+.+.+.. +.-+||+|-+-.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHH
Confidence 34555555543 456899999854
No 63
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.53 E-value=0.00059 Score=60.34 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+...+.+..++..+ .-..++-++|.+|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45799999999999988754 235677779999999999999998864
No 64
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.53 E-value=0.00026 Score=61.00 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHH---HHhc----------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWR---CITE----------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~---~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.+..++.|.+ +..- .......+.++|++|+||||+|+.+.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 47898876665543 3311 12345667899999999999999998764
No 65
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00012 Score=68.75 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+++..+. -.+.+.++|++|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999998988887662 33556899999999999999998876
No 66
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.51 E-value=0.0013 Score=55.95 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQ 242 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~ 242 (287)
.+..+.++...-......+-++|.+|+|||+||..+.+.. .. .-..+++++ ..+++..+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l-~~--~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL-LL--RGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 3444444443322234578899999999999999999977 22 222344443 34555554443321 1
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 243 GKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 243 ~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
..+... +.+.+. +.=||||||+-.
T Consensus 150 ~~~~~~----~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEEQ----LLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHHH----HHHHhc-cCCEEEEeCCCC
Confidence 122222 233344 344888899966
No 67
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.49 E-value=0.00065 Score=57.33 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=58.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCC----CCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-------CCCC
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHD----FDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS-------WQGK 244 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~-------~~~~ 244 (287)
..-.++.|+|.+|+|||||+..+.-.. ..... ...++|++....++...+.+ ++++.+..... ....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecC
Confidence 456899999999999999999986443 11221 35789999888877665543 34443321100 0112
Q ss_pred CHHH---HHHHHHHHhC-C-CcEEEEEeCCCC
Q 043249 245 SFEE---RASDITNTLK-H-KKFVLLSDDIWE 271 (287)
Q Consensus 245 ~~~~---l~~~l~~~l~-~-kr~LlVLDDvw~ 271 (287)
+..+ +...+...+. . +--|||+|-+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 2333 3344555554 4 678999999965
No 68
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.48 E-value=0.0019 Score=54.15 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=58.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCC------CEEEEEEecCCCCHHHHHHHHHHHhCCCCC----C---CC
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF------DVVIWSVVSREPNLMQIQEDIGKRIGFSTD----S---WQ 242 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F------~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~----~---~~ 242 (287)
..-.++.|+|.+|+|||+|+..+.... ...- ..++|+.....++...+.+ +......... . ..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~ 92 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVAR 92 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEe
Confidence 356899999999999999999986643 1222 4678998888777766543 3333222100 0 11
Q ss_pred CCCHHHHHHHHHHHhC----CCcEEEEEeCCCC
Q 043249 243 GKSFEERASDITNTLK----HKKFVLLSDDIWE 271 (287)
Q Consensus 243 ~~~~~~l~~~l~~~l~----~kr~LlVLDDvw~ 271 (287)
..+.+++...+.+.+. .+--|||+|.+..
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 93 PYNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 2355566656655543 3556999999865
No 69
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00063 Score=63.66 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=63.1
Q ss_pred cccchHHHHHHHHHHHhc---cC-------CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHH
Q 043249 156 TIVGQESILDQVWRCITE---QK-------KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQ 225 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~ 225 (287)
++=|.+..+.++.+++.. .+ ...+=+-++|++|+|||.||+.+.+.. . +-++.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G-------VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C-------CceEeecch-----
Confidence 345788888888877653 11 234556799999999999999999977 2 234455443
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 226 IQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 226 i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
+|++.+ ...++..+.+...+....-.+++++||+.-
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233322 334555555556666778899999999854
No 70
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.012 Score=57.49 Aligned_cols=106 Identities=22% Similarity=0.342 Sum_probs=64.7
Q ss_pred CCcccchHHHHHHHHHHHhc-------cCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHH
Q 043249 154 DRTIVGQESILDQVWRCITE-------QKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQI 226 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i 226 (287)
...++|.++.++.+.+.+.. ++..+.+.-.+|+.|||||-||+.+...... .=+..+-+..| +.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg---~e~aliR~DMS------Ey 560 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG---DEQALIRIDMS------EY 560 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC---CCccceeechH------HH
Confidence 35689999999999888753 2345678888999999999999998776511 11333333333 22
Q ss_pred H-HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcE-EEEEeCCCC
Q 043249 227 Q-EDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKF-VLLSDDIWE 271 (287)
Q Consensus 227 ~-~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVLDDvw~ 271 (287)
. +.-++.+-+..+++-..+. -..|-+.++.++| +|+||+|..
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhh
Confidence 2 2223333332222211111 1235667778888 888899865
No 71
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.00098 Score=61.74 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=42.4
Q ss_pred CcccchHHH--HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCC-EEEEEEecCCCCHHHHHHHHH
Q 043249 155 RTIVGQESI--LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFD-VVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 155 ~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~-~~~wv~vs~~~~~~~i~~~i~ 231 (287)
+.++|-.+. ...+.+....++ ...-+-|+|..|+|||+|++.+.+.. . +.+.. .+.|++. .+++.++.
T Consensus 106 nFv~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~~------~~f~~~~~ 176 (440)
T PRK14088 106 NFVVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_pred ccccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEEH------HHHHHHHH
Confidence 345675433 233333333222 24458999999999999999999976 2 22333 3445443 35566666
Q ss_pred HHhC
Q 043249 232 KRIG 235 (287)
Q Consensus 232 ~~~~ 235 (287)
..+.
T Consensus 177 ~~~~ 180 (440)
T PRK14088 177 DSMK 180 (440)
T ss_pred HHHh
Confidence 5553
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.00095 Score=65.80 Aligned_cols=46 Identities=26% Similarity=0.405 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCce-EEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNG-IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.|.+++..+ ++. .+-++|..|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45899999999999988766 554 45799999999999999998865
No 73
>CHL00181 cbbX CbbX; Provisional
Probab=97.44 E-value=0.0015 Score=57.03 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=32.5
Q ss_pred CcccchHHHHHHHHHH---Hhcc----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRC---ITEQ----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~---L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|.+..+++|.++ +.-. ......+.++|.+|+||||+|+.+....
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3578887666655443 2211 1123457889999999999999997754
No 74
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.44 E-value=0.00087 Score=67.18 Aligned_cols=46 Identities=15% Similarity=0.413 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++||+.+++++++.|... ...-+-++|.+|+|||++++.+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999876 33344589999999999999988765
No 75
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.44 E-value=0.0004 Score=55.95 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=28.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEE
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWS 215 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv 215 (287)
...+|.+.|+.|+||||+|+.++... ..++...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 55799999999999999999999877 3345444444
No 76
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.43 E-value=0.025 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-+.++|..|+|||+||..+.+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 668999999999999999999976
No 77
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.41 E-value=0.001 Score=60.74 Aligned_cols=48 Identities=25% Similarity=0.264 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHHhc----c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.+..+++|.+.+.. . -...+-+.++|++|+|||+||+.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4578998888888776531 1 1245678899999999999999999865
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0014 Score=61.11 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=37.5
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+.....|...+..+ .+ +.+-++|++|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899988888887777655 44 557899999999999999998764
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0015 Score=61.75 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.+...+..+. -.+.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999998887651 23457789999999999999998754
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.37 E-value=0.0024 Score=55.72 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=31.1
Q ss_pred cccchHHHHHHHHHH---Hhcc----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRC---ITEQ----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~---L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.++.+++|.++ +..+ .....-+-++|.+|+||||+|+.+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 468887766665443 2111 0112357799999999999998876654
No 81
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.37 E-value=0.0012 Score=61.38 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=31.4
Q ss_pred cccchHH--HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQES--ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|..+ ....+..+....+....-+.|+|..|+|||+|++.+.+..
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3556543 2333333333332234568899999999999999999976
No 82
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00055 Score=65.18 Aligned_cols=53 Identities=26% Similarity=0.462 Sum_probs=43.5
Q ss_pred CCcccchHHHHHHHHHHHhc----cCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCC
Q 043249 154 DRTIVGQESILDQVWRCITE----QKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF 209 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F 209 (287)
+.+-+|.++.+++|+++|-- ..-+-+++..||++|+|||+|++.|.... ...|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE
Confidence 34459999999999999852 33466899999999999999999999876 4455
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.00075 Score=62.45 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..+..|..++..+ ++ +.+-++|+.|+||||+|+.+.+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999888876 44 457899999999999999998865
No 84
>PRK06696 uridine kinase; Validated
Probab=97.36 E-value=0.00041 Score=58.24 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHhc-cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 159 GQESILDQVWRCITE-QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 159 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|..-+++|.+.+.. ......+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667777777764 23478899999999999999999998866
No 85
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.36 E-value=0.00094 Score=57.45 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=60.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCC-CEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF-DVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFE--- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~--- 247 (287)
+-.-++|+|..|+|||||++.+++.. +.+| +.++++.+.+... ..++.+++...-.... ....+....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45677999999999999999999976 3344 4567777877654 3455565554311100 000111111
Q ss_pred ---HHHHHHHHHh--C-CCcEEEEEeCCCCcccccccc
Q 043249 248 ---ERASDITNTL--K-HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 ---~l~~~l~~~l--~-~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+-.+.+++ + ++..||++||+..-...+..+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~rei 182 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEV 182 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHH
Confidence 1123356666 3 899999999997622334443
No 86
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.35 E-value=0.00097 Score=62.82 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=33.7
Q ss_pred CcccchHHHHHHHHHHH---hcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCI---TEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.++.++++.+++ ... ....+-+-++|++|+|||+||+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 35788887666555443 221 1233457899999999999999998865
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.34 E-value=0.0022 Score=58.82 Aligned_cols=48 Identities=25% Similarity=0.370 Sum_probs=31.3
Q ss_pred CcccchHHH--HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESI--LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|.++. ...+.++....+.....+.|+|..|+|||+|++.+++..
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 335675543 222333333322234568899999999999999999976
No 88
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.0012 Score=61.39 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=54.3
Q ss_pred CcccchHHH--HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 155 RTIVGQESI--LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 155 ~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
+.++|-.+. ...+..+...++....-+-|+|..|+|||+|++.+.+.. .....--.++ +++ ...+...+..
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~--yv~----~~~f~~~~~~ 188 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVS--YMS----GDEFARKAVD 188 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEE--EEE----HHHHHHHHHH
Confidence 345675443 222333333232234567899999999999999999865 2111111222 332 3467777776
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 233 RIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.++... .....+.+.++ +.-+|||||+-.
T Consensus 189 ~l~~~~---------~~~~~~~~~~~-~~dvLiIDDiq~ 217 (450)
T PRK14087 189 ILQKTH---------KEIEQFKNEIC-QNDVLIIDDVQF 217 (450)
T ss_pred HHHHhh---------hHHHHHHHHhc-cCCEEEEecccc
Confidence 664310 11223344443 344788899854
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.31 E-value=0.0012 Score=55.95 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=37.5
Q ss_pred CCcccchHH-HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC
Q 043249 154 DRTIVGQES-ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR 219 (287)
Q Consensus 154 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 219 (287)
++.++|-+. ....+-++.... ....+.|+|+.|+|||+|++.+.+.. . ..-..+.+++++.
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~ 83 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDK 83 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHH
Confidence 344557333 333333333323 44678899999999999999999876 2 2223455666654
No 90
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.31 E-value=0.0029 Score=49.52 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=30.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN 222 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~ 222 (287)
++.|+|.+|+||||++..+.... ...-..++|+.....++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46799999999999999998865 22345677777765543
No 91
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.29 E-value=0.0022 Score=53.65 Aligned_cols=49 Identities=31% Similarity=0.492 Sum_probs=31.9
Q ss_pred CCcccchH-HHHHHHHHHHhcc-CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQE-SILDQVWRCITEQ-KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~-~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.++|-. ...-...+.+..+ +.....+-|+|..|+|||.|.+.+++..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34556743 3333444444433 3345567899999999999999999976
No 92
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.29 E-value=0.0017 Score=54.07 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++||-++.++.+--...++ +.+-+-|-||+|+||||-+..+.+..
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 46899999999887766666 78888899999999999888877654
No 93
>PRK07667 uridine kinase; Provisional
Probab=97.29 E-value=0.00043 Score=56.80 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=32.1
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.|.+.+........+|+|-|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456667776655567899999999999999999998865
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0022 Score=58.68 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.|.+++..+ .+ ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999888888766 44 447799999999999999987765
No 95
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0024 Score=60.13 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++||-+..++.|.+++..+ ++ ..+-++|+.|+||||+|+.+.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999999999766 44 456899999999999999988755
No 96
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.27 E-value=0.00039 Score=65.28 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=40.6
Q ss_pred cccchHHHHHHHHHHHhc----cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITE----QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++|.++.+++|++.|.. -+...+++.++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 469999999999999943 24466899999999999999999998866
No 97
>PRK08233 hypothetical protein; Provisional
Probab=97.26 E-value=0.00082 Score=54.21 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 35799999999999999999998765
No 98
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.26 E-value=0.0037 Score=52.13 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=52.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHh----CCCCCCCCCCCHHHH--
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRI----GFSTDSWQGKSFEER-- 249 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~----~~~~~~~~~~~~~~l-- 249 (287)
..-.++.|.|.+|+||||++..+.... ..+-..++|++....+. .-+++++... ...-.-....+..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGR 91 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHH
Confidence 356899999999999999999987654 22234567887665554 2333343321 100000112233333
Q ss_pred -HHHHHHHhCCCcEEEEEeCCCC
Q 043249 250 -ASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 250 -~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
...+...+..+.-++|+|-+-.
T Consensus 92 ~~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 92 AIQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHHhcCCcEEEEechHH
Confidence 2344555555566899999854
No 99
>CHL00176 ftsH cell division protein; Validated
Probab=97.25 E-value=0.0013 Score=63.40 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=54.9
Q ss_pred CcccchHHHHHHHHH---HHhccC-------CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH
Q 043249 155 RTIVGQESILDQVWR---CITEQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM 224 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~---~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 224 (287)
.++.|.++.++++.+ .|...+ ...+-+.++|++|+|||+||+.+.+.. ..+ |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 457787765555544 443321 234568899999999999999998865 222 3343321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 225 QIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 225 ~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+.. ... ......+...+.....+.+++|+|||+..
T Consensus 251 ~f~~----~~~-------g~~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 251 EFVE----MFV-------GVGAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred HHHH----Hhh-------hhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 1111 100 01122333445555567889999999953
No 100
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.25 E-value=0.00043 Score=61.65 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+.+++..+ ..+.+-++|++|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999888766 55567899999999999999998865
No 101
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.24 E-value=0.0038 Score=57.36 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.++.++|.+|+||||.+..+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999987776553
No 102
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.23 E-value=0.0047 Score=60.11 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=68.9
Q ss_pred HHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCC--
Q 043249 165 DQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR-EPNLMQIQEDIGKRIGFSTDSW-- 241 (287)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~-~~~~~~i~~~i~~~~~~~~~~~-- 241 (287)
.++.+.|... .+.+.+-|.-+.|.|||||+-...... ..=..+.|.+++. +.++..+.+-++..++.-.+..
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 3455555443 277899999999999999999887532 2334689999866 5678889999998887422111
Q ss_pred ---------CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 242 ---------QGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 242 ---------~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
...+...+.+.+...|. .++..|||||-.-
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHl 140 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHL 140 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 12233344455555444 5689999999643
No 103
>PRK03839 putative kinase; Provisional
Probab=97.22 E-value=0.0016 Score=52.68 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 104
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.21 E-value=0.0044 Score=54.94 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=59.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCC----CCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-------CCCC
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHD----FDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS-------WQGK 244 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~-------~~~~ 244 (287)
....++-|+|.+|+|||+++..+.-.. ..... =...+|++....|++..+.+ ++++++..... ....
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCC
Confidence 367899999999999999999987543 11111 14789999999888887654 44555432110 0111
Q ss_pred CH---HHHHHHHHHHhCC--CcEEEEEeCCCC
Q 043249 245 SF---EERASDITNTLKH--KKFVLLSDDIWE 271 (287)
Q Consensus 245 ~~---~~l~~~l~~~l~~--kr~LlVLDDvw~ 271 (287)
+. ..+...+...+.. +-=|||+|-+-.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 11 2334455565653 344999999864
No 105
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.21 E-value=0.00096 Score=59.47 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-+..++|||++|+|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 367899999999999999999999976
No 106
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.00052 Score=58.56 Aligned_cols=48 Identities=29% Similarity=0.454 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHhc---cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE---QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.++-++++-=.+.. .+..+-.+-++|++|+||||||..+.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 4579999888887655543 35578899999999999999999999976
No 107
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.003 Score=60.57 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+...+.|.+++..+. -.+.+-++|+.|+||||+|+.+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999988662 24677899999999999999997754
No 108
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0018 Score=60.85 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..+..+...+..+. -.+-+-++|+.|+||||+|+.+.+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999998888776551 23567899999999999999998865
No 109
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.18 E-value=0.0043 Score=54.66 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 043249 159 GQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGF 236 (287)
Q Consensus 159 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~ 236 (287)
++........+++..- ....+-+-++|..|+|||.||.++.+.. - ...+. +.+++++ .++.++-.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l-~-~~g~~-v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL-A-KKGVS-STLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH-H-HcCCC-EEEEEHH------HHHHHHHHHHhc
Confidence 4444455555555432 1234568899999999999999999987 2 33343 3455543 566666554432
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 237 STDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+.... +. .+. +-=||||||+-.
T Consensus 206 -------~~~~~~---l~-~l~-~~dlLiIDDiG~ 228 (306)
T PRK08939 206 -------GSVKEK---ID-AVK-EAPVLMLDDIGA 228 (306)
T ss_pred -------CcHHHH---HH-Hhc-CCCEEEEecCCC
Confidence 122222 22 233 566899999965
No 110
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.17 E-value=0.00092 Score=64.23 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|-+..++++..+|... .....++.|+|++|+||||+++.+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999888753 1234679999999999999999998765
No 111
>PRK10867 signal recognition particle protein; Provisional
Probab=97.13 E-value=0.0056 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.+|.++|.+|+||||.+..+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999777765543
No 112
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.12 E-value=0.002 Score=56.82 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=57.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASD 252 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~ 252 (287)
..-+++-|+|.+|+||||||..+.... ...-..++|+...+.++.. .+++++..... ....+.++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 356899999999999999998876654 2234567788877766653 34455432110 112244555555
Q ss_pred HHHHhC-CCcEEEEEeCCCC
Q 043249 253 ITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 253 l~~~l~-~kr~LlVLDDvw~ 271 (287)
+...++ +.--+||+|-|-.
T Consensus 125 ~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHhhccCCcEEEEcchhh
Confidence 555554 4667899999864
No 113
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.12 E-value=0.0046 Score=53.88 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=46.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcccc-CCCCEEEEEEecCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEE-HDFDVVIWSVVSREPN--LMQIQEDIGKRIGFSTDSWQGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~-~~F~~~~wv~vs~~~~--~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l 253 (287)
+..++.++|.+|+||||++..+.... ..+ ..+ .+..|+.. .+. ...-+..-...++.+.. ...+...+...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l 267 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVK--VARDPKELRKAL 267 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHH
Confidence 46799999999999999999987765 322 223 33444432 221 22223333333343211 123444555445
Q ss_pred HHHhCCCcEEEEEeC
Q 043249 254 TNTLKHKKFVLLSDD 268 (287)
Q Consensus 254 ~~~l~~kr~LlVLDD 268 (287)
... .+ .=+|++|.
T Consensus 268 ~~~-~~-~d~vliDt 280 (282)
T TIGR03499 268 DRL-RD-KDLILIDT 280 (282)
T ss_pred HHc-cC-CCEEEEeC
Confidence 443 33 34677775
No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0045 Score=60.14 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999987662 23455799999999999999887755
No 115
>PRK04296 thymidine kinase; Provisional
Probab=97.10 E-value=0.0011 Score=54.14 Aligned_cols=86 Identities=20% Similarity=0.066 Sum_probs=47.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhC
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLK 258 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 258 (287)
.++-|+|..|.||||++....... . .+-..+..+. ..++.......++++++............++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-E--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-H--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 467889999999999998887765 2 2222233231 2222222244456666542211112334445555555 23
Q ss_pred CCcEEEEEeCCC
Q 043249 259 HKKFVLLSDDIW 270 (287)
Q Consensus 259 ~kr~LlVLDDvw 270 (287)
++.=+||+|.+-
T Consensus 77 ~~~dvviIDEaq 88 (190)
T PRK04296 77 EKIDCVLIDEAQ 88 (190)
T ss_pred CCCCEEEEEccc
Confidence 344589999984
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.09 E-value=0.0015 Score=60.20 Aligned_cols=47 Identities=32% Similarity=0.348 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.|.+..+++|.+.+.-. -....-+.++|++|+|||++|+.+.+..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678998888887766321 1234567899999999999999999965
No 117
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.09 E-value=0.0034 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999988765
No 118
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.08 E-value=0.0071 Score=55.78 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=35.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC--HHHHHHHHHHHhCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN--LMQIQEDIGKRIGF 236 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~--~~~i~~~i~~~~~~ 236 (287)
.+.+|.++|.+|+||||++..+.... .. ..+. +.-|+.. .+. ...-++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~k-V~lV~~D-~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGLK-VGLVAAD-TYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCCe-EEEecCC-CCCHHHHHHHHHHHHHcCC
Confidence 57899999999999999999998776 32 2332 2223322 222 23445556666554
No 119
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0037 Score=59.99 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++||-+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999998887761 33566899999999999999996654
No 120
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.08 E-value=0.0006 Score=56.59 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|+|.|.+|+|||||++.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999998865
No 121
>PRK06762 hypothetical protein; Provisional
Probab=97.07 E-value=0.0042 Score=49.43 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 122
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.003 Score=54.09 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=46.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
...-+.++|.+|+|||.||.++.+.. - +..+.+ .+++ ..+++.++...... .... ..|.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~sv-~f~~------~~el~~~Lk~~~~~------~~~~----~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGISV-LFIT------APDLLSKLKAAFDE------GRLE----EKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCCeE-EEEE------HHHHHHHHHHHHhc------CchH----HHHHHH
Confidence 55677899999999999999999987 3 333433 3443 44566666655432 1111 223332
Q ss_pred hCCCcEEEEEeCCCC
Q 043249 257 LKHKKFVLLSDDIWE 271 (287)
Q Consensus 257 l~~kr~LlVLDDvw~ 271 (287)
+. +-=||||||+-.
T Consensus 165 l~-~~dlLIiDDlG~ 178 (254)
T COG1484 165 LK-KVDLLIIDDIGY 178 (254)
T ss_pred hh-cCCEEEEecccC
Confidence 22 334889999866
No 123
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.06 E-value=0.0043 Score=51.01 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=25.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEe
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVV 217 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v 217 (287)
++||.+||+.|+||||.+-.+.... ..+ -..+..++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecC
Confidence 4799999999999999888877665 322 223445553
No 124
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.06 E-value=0.0024 Score=56.37 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=57.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASD 252 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~ 252 (287)
..-+++-|+|++|+||||||-.+.-.. ...-..++|+.....+++. .+++++..... ....+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 356789999999999999999976654 2334567899887777653 34444432110 112244555555
Q ss_pred HHHHhC-CCcEEEEEeCCCC
Q 043249 253 ITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 253 l~~~l~-~kr~LlVLDDvw~ 271 (287)
+...++ +.--+||+|-|-.
T Consensus 125 ~~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHHhccCCCEEEEcchHh
Confidence 655554 4567899999864
No 125
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.05 E-value=0.0025 Score=62.97 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.|.+..++.+.+++... -...+-+.++|.+|+||||||+.+.+..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4779999888887776421 0234567899999999999999998865
No 126
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.05 E-value=0.011 Score=49.90 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....+++|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999998765
No 127
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.0048 Score=59.08 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++||.+..++.|.+++..+ ++ +.+-++|..|+||||+|+.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999999998766 44 456889999999999999998765
No 128
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.04 E-value=0.00058 Score=51.57 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 129
>PRK06547 hypothetical protein; Provisional
Probab=97.04 E-value=0.0012 Score=53.16 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 167 VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+...+... ...+|+|.|..|+||||+|+.+....
T Consensus 6 ~~~~~~~~--~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGG--GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcC--CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344433 78899999999999999999998764
No 130
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.02 E-value=0.00064 Score=56.36 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999998865
No 131
>PRK09354 recA recombinase A; Provisional
Probab=97.02 E-value=0.0029 Score=56.34 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=58.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASD 252 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~ 252 (287)
..-+++-|+|++|+|||||+-.+.... ...-..++|+.....+++. .+++++..... ....+.++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 356799999999999999999987654 2344678899888877763 34555432110 112244555555
Q ss_pred HHHHhC-CCcEEEEEeCCCC
Q 043249 253 ITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 253 l~~~l~-~kr~LlVLDDvw~ 271 (287)
+...++ ++--+||+|-|-.
T Consensus 130 ~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHHhhcCCCCEEEEeChhh
Confidence 655554 4667899999864
No 132
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.0031 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-+.++|.+|+|||.||..+.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 458899999999999999998865
No 133
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.00 E-value=0.0022 Score=51.91 Aligned_cols=73 Identities=25% Similarity=0.365 Sum_probs=42.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTL 257 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 257 (287)
..-+.++|..|+|||.||..+.+... ...+. +.|+. ..+++..+-..- ......... +.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~~-v~f~~------~~~L~~~l~~~~-------~~~~~~~~~----~~l 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI--RKGYS-VLFIT------ASDLLDELKQSR-------SDGSYEELL----KRL 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCHHH----HHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc--cCCcc-eeEee------cCceeccccccc-------cccchhhhc----Ccc
Confidence 45688999999999999999988762 23333 34554 345555543221 111222222 223
Q ss_pred CCCcEEEEEeCCCC
Q 043249 258 KHKKFVLLSDDIWE 271 (287)
Q Consensus 258 ~~kr~LlVLDDvw~ 271 (287)
. +-=||||||+-.
T Consensus 107 ~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 107 K-RVDLLILDDLGY 119 (178)
T ss_dssp H-TSSCEEEETCTS
T ss_pred c-cccEecccccce
Confidence 3 345788999976
No 134
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.98 E-value=0.0042 Score=49.71 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=43.1
Q ss_pred ccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 157 IVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
++|.+..+.++++.+..-.....-|-|+|..|+||+.+|+.+++.. ...-.+.+-|+.+ .++.+.+-.+++-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~-~~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCA-ALPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETT-TS-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehh-hhhcchhhhhhhc
Confidence 4677778888887776532234566699999999999999999954 2222233334444 3344444445543
No 135
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.98 E-value=0.0088 Score=50.51 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=56.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC----------------
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTD---------------- 239 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~---------------- 239 (287)
...+++.|+|.+|+|||||+..+.... .+ +=..++|++..+. +..+.+.+ .+++..-.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 467899999999999999999985432 12 2346788888654 55666653 33332110
Q ss_pred --CCCCCCHHHHHHHHHHHhCC-CcEEEEEeCCC
Q 043249 240 --SWQGKSFEERASDITNTLKH-KKFVLLSDDIW 270 (287)
Q Consensus 240 --~~~~~~~~~l~~~l~~~l~~-kr~LlVLDDvw 270 (287)
.....+.+.+...+.+.+.. +.=++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01123345666777777763 55589999876
No 136
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.98 E-value=0.00067 Score=55.65 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=45.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCE---EEEEEecCCCCHHHHHHHHHHHhCC--CCCCCCCCCHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDV---VIWSVVSREPNLMQIQEDIGKRIGF--STDSWQGKSFEERASDIT 254 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~---~~wv~vs~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~l~~~l~ 254 (287)
||+|.|.+|+||||+|+.+.... . +..+.+ ...++...-+........ -..... .-......+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~-~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-N-KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-T-TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-C-ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 79999999999999999999877 3 223331 223332222222222221 111111 011223557777888887
Q ss_pred HHhCCCcEEE
Q 043249 255 NTLKHKKFVL 264 (287)
Q Consensus 255 ~~l~~kr~Ll 264 (287)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7766665444
No 137
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.0055 Score=59.05 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++||.+..++.|.+.+..+ ++ +.+-++|..|+||||+|+.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999888766 44 446799999999999999997765
No 138
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0033 Score=52.05 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=24.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.-+|+|-|.+|+||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999977
No 139
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0076 Score=54.53 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+...+.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999887651 34578899999999999999997754
No 140
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.96 E-value=0.011 Score=52.78 Aligned_cols=99 Identities=11% Similarity=0.134 Sum_probs=61.7
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhcccc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE----HDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS------ 240 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~------ 240 (287)
|..+=....++-|+|.+|+|||+|+..+.-.. ... ..-..++|++....|+++++. +|+++++.....
T Consensus 116 L~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~ 193 (342)
T PLN03186 116 LEGGIETGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVA 193 (342)
T ss_pred hcCCCcCceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceE
Confidence 43333456888999999999999998776432 111 112378999999999998864 556666542211
Q ss_pred -CCCCCHHHHHHHHH---HHh-CCCcEEEEEeCCCC
Q 043249 241 -WQGKSFEERASDIT---NTL-KHKKFVLLSDDIWE 271 (287)
Q Consensus 241 -~~~~~~~~l~~~l~---~~l-~~kr~LlVLDDvw~ 271 (287)
....+.+++...+. ..+ ..+--|||+|-+-.
T Consensus 194 ~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 194 YARAYNTDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred EEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 01234444433332 223 35667899999854
No 141
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0077 Score=57.11 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.+.+++..+ ++ +.+-++|..|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999988866 44 456799999999999999997654
No 142
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0023 Score=61.64 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999988661 23567899999999999999987754
No 143
>PTZ00301 uridine kinase; Provisional
Probab=96.95 E-value=0.0012 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|+|-|.+|+||||||+.+.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHH
Confidence 45799999999999999999987754
No 144
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.95 E-value=0.007 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|+|.|..|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998866
No 145
>PRK06526 transposase; Provisional
Probab=96.94 E-value=0.0031 Score=54.00 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..-+.++|++|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3457899999999999999998865
No 146
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.002 Score=59.61 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=36.4
Q ss_pred ccchH---HHHHHHHHHHhccC-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 157 IVGQE---SILDQVWRCITEQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 157 ~vGr~---~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+-|.| .++++|+++|.++. +=++=|-++|++|.|||-||++|....
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 45665 57788899998752 235667899999999999999998865
No 147
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.93 E-value=0.015 Score=51.30 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=61.5
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhcccc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE----HDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS------ 240 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~------ 240 (287)
|..+=..-+++-|+|.+|+|||+|+..+.-.. ... ..=...+|++....|+++++.+ ++++++.....
T Consensus 89 LgGGi~~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~ 166 (313)
T TIGR02238 89 LGGGIESMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNIL 166 (313)
T ss_pred hCCCCcCCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEE
Confidence 44333466899999999999999998764322 111 1124689999999999998765 56666542111
Q ss_pred -CCCCCHHHHH---HHHHHHhC-CCcEEEEEeCCCC
Q 043249 241 -WQGKSFEERA---SDITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 241 -~~~~~~~~l~---~~l~~~l~-~kr~LlVLDDvw~ 271 (287)
....+.+++. ..+...+. ++-=|||+|-+-.
T Consensus 167 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 167 YARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 0112333333 33333443 4556899999865
No 148
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0095 Score=57.36 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.|.+++..+ .+ .-+-++|+.|+||||+|+.+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999998888765 44 448899999999999999987755
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0014 Score=51.36 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..-|.|.||+|+|||||++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999877
No 150
>PHA00729 NTP-binding motif containing protein
Probab=96.92 E-value=0.0016 Score=54.33 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 166 QVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++.+... ....|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555555 45678899999999999999998864
No 151
>PRK09183 transposase/IS protein; Provisional
Probab=96.92 E-value=0.0042 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+.|+|.+|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999997764
No 152
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.91 E-value=0.0024 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|+|.+|+||||+|+.+....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999876
No 153
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.90 E-value=0.0093 Score=50.53 Aligned_cols=95 Identities=12% Similarity=0.171 Sum_probs=58.1
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC------------
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFST------------ 238 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------ 238 (287)
|..+=...+++.|.|.+|+|||++|..+.... -..-+..+||+... ++..+.+.+. +++..-
T Consensus 14 l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~ 87 (237)
T TIGR03877 14 LHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIV 87 (237)
T ss_pred hcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEE
Confidence 43333466899999999999999998864432 12345778888765 4666666543 222110
Q ss_pred -------------CC---CCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 043249 239 -------------DS---WQGKSFEERASDITNTLKH-KKFVLLSDDIWE 271 (287)
Q Consensus 239 -------------~~---~~~~~~~~l~~~l~~~l~~-kr~LlVLDDvw~ 271 (287)
.. ....+..++...+.+.+.. +.=++|+|.+-.
T Consensus 88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 88 DAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred eccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 00 0123566677777776642 344699998754
No 154
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.90 E-value=0.0085 Score=52.92 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=60.0
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH----DFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS------ 240 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~------ 240 (287)
|..+=....++-|+|.+|+||||++..+.-.. .... .=...+||+....|+...+.+ +++.++.....
T Consensus 88 l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl~~~~~~~~i~ 165 (310)
T TIGR02236 88 LGGGIETQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGLDPDEVLKNIY 165 (310)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhhceE
Confidence 43332357899999999999999999986653 1110 112789999999898887654 45554432100
Q ss_pred -CCCCCHH---HHHHHHHHHhCCC---cEEEEEeCCCC
Q 043249 241 -WQGKSFE---ERASDITNTLKHK---KFVLLSDDIWE 271 (287)
Q Consensus 241 -~~~~~~~---~l~~~l~~~l~~k---r~LlVLDDvw~ 271 (287)
....+.+ .+...+.+.+... --+||+|-+-.
T Consensus 166 i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 166 VARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred EEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 0011111 2334455555432 34999999865
No 155
>PRK06921 hypothetical protein; Provisional
Probab=96.90 E-value=0.0079 Score=51.90 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEe
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVV 217 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v 217 (287)
...-+.++|..|+|||+||.++.+.. . +.+-..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEH
Confidence 35678899999999999999999976 2 221234455554
No 156
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0017 Score=50.20 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=43.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
..+-|-|.|.+|+|||||+..+.... .| -|+++|+-.-...+...-=+ .-.....+.+.+.+.|...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE-----~y~c~i~DEdkv~D~Le~~ 72 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDE-----EYKCHILDEDKVLDELEPL 72 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhcccc-----cccCccccHHHHHHHHHHH
Confidence 34567899999999999999998654 22 46777653222222211111 0112345777788888777
Q ss_pred hCCCc
Q 043249 257 LKHKK 261 (287)
Q Consensus 257 l~~kr 261 (287)
+.+.-
T Consensus 73 m~~Gg 77 (176)
T KOG3347|consen 73 MIEGG 77 (176)
T ss_pred HhcCC
Confidence 66543
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.89 E-value=0.0096 Score=59.83 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=39.5
Q ss_pred CCcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+.+.+... .....++.++|+.|+|||++|+.+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456899999999998888642 1224678899999999999999998865
No 158
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.89 E-value=0.008 Score=59.41 Aligned_cols=49 Identities=31% Similarity=0.457 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+.+.+... +....++.++|+.|+|||+||+.+....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 356789999999888887632 2234578899999999999999998865
No 159
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.89 E-value=0.002 Score=54.08 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 157 IVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.|.++.....+..+.........+.|+|..|+|||+||+.+++..
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3455444333333332222245678899999999999999999875
No 160
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.89 E-value=0.001 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|-++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998765
No 161
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.89 E-value=0.011 Score=51.45 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+.+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998875544
No 162
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.88 E-value=0.0098 Score=52.64 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=60.1
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhccc----cCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSE----EHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS------ 240 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v----~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~------ 240 (287)
|..+=....++-|+|.+|+|||||+..+.... .. ...-..++|++....|+..++ ..++++++.....
T Consensus 89 l~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~ 166 (316)
T TIGR02239 89 LGGGIETGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVA 166 (316)
T ss_pred hcCCCCCCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEE
Confidence 44333467899999999999999999876532 11 112236789998888888874 4455555442111
Q ss_pred -CCCCCHHHHHHHH---HHHhC-CCcEEEEEeCCCC
Q 043249 241 -WQGKSFEERASDI---TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 241 -~~~~~~~~l~~~l---~~~l~-~kr~LlVLDDvw~ 271 (287)
....+.+++...+ ...+. .+--|||+|-+-.
T Consensus 167 ~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 167 YARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred EEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 0112334433333 33343 4566899999864
No 163
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0015 Score=53.81 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=44.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHH---HHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQE---DIGKRIGFSTDSWQGKSFEERASDITN 255 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~---~i~~~~~~~~~~~~~~~~~~l~~~l~~ 255 (287)
.+|.|+|..|+||||++..+.... ..+...++++. ..+. +.... .++.+-.. ..+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPI--EFVHESKRSLINQREV------GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCc--cccccCccceeeeccc------CCCccCHHHHHHH
Confidence 478999999999999999877654 22333343332 1111 10000 11111000 1111234455677
Q ss_pred HhCCCcEEEEEeCCCCccc
Q 043249 256 TLKHKKFVLLSDDIWESEI 274 (287)
Q Consensus 256 ~l~~kr~LlVLDDvw~~~~ 274 (287)
.|+...=+|++|++.+ .+
T Consensus 70 aLr~~pd~ii~gEird-~e 87 (198)
T cd01131 70 ALRQDPDVILVGEMRD-LE 87 (198)
T ss_pred HhcCCcCEEEEcCCCC-HH
Confidence 7776666888888877 44
No 164
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.85 E-value=0.0044 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..-+.|+|..|+|||+|++.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999976
No 165
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.85 E-value=0.0019 Score=59.73 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|+++.++.+...+..+ ..+-|.|.+|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHh
Confidence 45799999999998888765 567799999999999999998865
No 166
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.85 E-value=0.0094 Score=59.81 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=38.4
Q ss_pred CCcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+.+.+... +....++.++|+.|+|||+||+.+.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999988888877531 2223578899999999999999998765
No 167
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0026 Score=49.89 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=34.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFS 237 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~ 237 (287)
+|.|-|.+|+||||+|+.+.++. . ..+ .+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g----l~~---------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G----LKL---------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C----Cce---------eeccHHHHHHHHHcCCC
Confidence 68999999999999999998876 1 111 13457899999987763
No 168
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.011 Score=51.06 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=61.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhC---CCCCCCCCCCHHHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIG---FSTDSWQGKSFEERASD 252 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~---~~~~~~~~~~~~~l~~~ 252 (287)
..-.++=|+|+.|.||||+|-+++-.. +..-..++|+..-..++++.+..--...+. ... ..+.....+.+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~-~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQ-PDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEec-CCCHHHHHHHHHH
Confidence 467899999999999999999987654 455558899999999998876543332121 111 1112222334445
Q ss_pred HHHHhCCCcEEEEEeCCCC
Q 043249 253 ITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 253 l~~~l~~kr~LlVLDDvw~ 271 (287)
+......+--|+|+|-|-.
T Consensus 134 ~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHhccCCCCEEEEecCcc
Confidence 5555555578999998865
No 169
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0023 Score=57.84 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 468999999999988887651 34567899999999999999998765
No 170
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.82 E-value=0.021 Score=51.05 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=61.5
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhccc----cCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSE----EHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS------ 240 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v----~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~------ 240 (287)
|..+=..-+++=|+|.+|+|||+|+-.+.-.. .. ...-...+|++....|+++++.+ ++++++.....
T Consensus 119 LgGGi~~G~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~ 196 (344)
T PLN03187 119 LGGGIETRCITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNII 196 (344)
T ss_pred cCCCCCCCeEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEE
Confidence 43332456888999999999999998774322 11 11124689999999999998765 56666553211
Q ss_pred -CCCCCHHHHHHH---HHHHhC-CCcEEEEEeCCCC
Q 043249 241 -WQGKSFEERASD---ITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 241 -~~~~~~~~l~~~---l~~~l~-~kr~LlVLDDvw~ 271 (287)
....+.+++... +...+. .+--|||+|-+-.
T Consensus 197 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 197 YARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred EecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 112344443333 333332 4456899999864
No 171
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.026 Score=54.58 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=62.1
Q ss_pred CcccchHHHHHHHHHHHhc----------cCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH
Q 043249 155 RTIVGQESILDQVWRCITE----------QKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM 224 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 224 (287)
+++=|.++.+.+|.+-+.- +-.+.+=|-.||++|.|||-|||+|.... ...|++|-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 5666889888888775432 12346678899999999999999998865 2345666543
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 225 QIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 225 ~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
+++.. .+| .+++-+.+...+.=.-+.|.|.+|++.+
T Consensus 740 ELLNM---YVG--------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNM---YVG--------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHH---Hhc--------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22221 122 2334444445555557899999999876
No 172
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.79 E-value=0.0014 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|.|+|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998654
No 173
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.78 E-value=0.0014 Score=44.19 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|.|.|..|+||||+++.+-+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998863
No 174
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0092 Score=57.12 Aligned_cols=88 Identities=22% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCCCC
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE--PNLMQIQEDIGKRIGFSTDS 240 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~i~~~~~~~~~~ 240 (287)
..++..+.....--..+-|-|.|..|+|||+|++.+++.. . +.+.-.+..|+.|.- -..++|++.
T Consensus 416 ~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~~e~iQk~----------- 482 (952)
T KOG0735|consen 416 YKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSSLEKIQKF----------- 482 (952)
T ss_pred hhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchhHHHHHHH-----------
Confidence 3333333333332345678899999999999999999987 4 444444555555431 112222221
Q ss_pred CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 241 WQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 241 ~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
+...+.+.+....-+|||||+..
T Consensus 483 --------l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 483 --------LNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred --------HHHHHHHHHhhCCcEEEEcchhh
Confidence 12223455667888999999964
No 175
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.75 E-value=0.01 Score=47.87 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=47.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcccc-----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC----CCCCCCCHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEE-----HDFDVVIWSVVSREPNLMQIQEDIGKRIGFST----DSWQGKSFE 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~-----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~----~~~~~~~~~ 247 (287)
.-.+++|+|..|+|||||.+.+..+..++. ..|.......+.+ .+.++.++... ......+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 457899999999999999999964321111 1111111122332 45666666421 111223332
Q ss_pred HH-HHHHHHHhCCC--cEEEEEeCCCC
Q 043249 248 ER-ASDITNTLKHK--KFVLLSDDIWE 271 (287)
Q Consensus 248 ~l-~~~l~~~l~~k--r~LlVLDDvw~ 271 (287)
+. .-.|.+.+-.+ .=+++||+--+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 22 22345555556 66888898766
No 176
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.75 E-value=0.0081 Score=59.44 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=35.4
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.+..++.|.+.+.-. -...+-+.++|++|+|||+||+.+.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 34678888777776665321 1234557889999999999999999865
No 177
>PRK05439 pantothenate kinase; Provisional
Probab=96.75 E-value=0.023 Score=50.01 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 175 KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 175 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....-+|+|-|.+|+||||+|+.+..-.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999987754
No 178
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.023 Score=51.50 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|+++|.+|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45899999999999999999997655
No 179
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.74 E-value=0.0074 Score=54.92 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCcccchHHHHHHHHHHHhcc------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ------------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.++.++.+...+... +...+-|-++|++|+||||+|+.+....
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999888887666531 1234678899999999999999998865
No 180
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.73 E-value=0.0033 Score=48.72 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=29.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR 219 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 219 (287)
++|.|+|..|+|||||++.+.+.. . +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 489999999999999999999987 3 35666666676665
No 181
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.73 E-value=0.0087 Score=59.96 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=39.1
Q ss_pred CCcccchHHHHHHHHHHHhc-------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITE-------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+.+.+.. +.....++.++|+.|+|||.||+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999888743 22344688999999999999999887654
No 182
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.016 Score=52.91 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhccCC--------CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKK--------NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|.+..++.|.+++..+.. -.+-+-++|+.|+||||+|+.+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4678999999999998876521 24557899999999999999987643
No 183
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0097 Score=57.25 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999988887651 23556799999999999999998765
No 184
>PRK04040 adenylate kinase; Provisional
Probab=96.71 E-value=0.0017 Score=53.06 Aligned_cols=47 Identities=26% Similarity=0.519 Sum_probs=32.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGF 236 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~ 236 (287)
..+|.|+|++|+||||+++.+.... . ..|.+ + +...+..+++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l-~--~~~~~---~------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL-K--EDYKI---V------NFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh-c--cCCeE---E------ecchHHHHHHHHcCC
Confidence 3689999999999999999998865 2 23332 2 234566666666554
No 185
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.71 E-value=0.016 Score=50.36 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC-----CCCCHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW-----QGKSFEERA 250 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~-----~~~~~~~l~ 250 (287)
.+..++.|+|.+|.|||||+..+.+.. ...+...+. ...-.+..+ .+.+...+.+.-.. --.+...+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l---~~~~~~~VI--~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL---KDSVPCAVI--EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh---ccCCCEEEE--CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHH
Confidence 389999999999999999999998875 223322222 222112222 12233333221001 112333445
Q ss_pred HHHHHHhCCCcEEEEEeCCCC
Q 043249 251 SDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 251 ~~l~~~l~~kr~LlVLDDvw~ 271 (287)
..+.......-=+|+++.|-+
T Consensus 175 ~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHhhcCCcEEEEECCCC
Confidence 555554444456778888864
No 186
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.013 Score=51.75 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHHHhcc----C-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 157 IVGQESILDQVWRCITEQ----K-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+=|.++.+++|.+...-+ + ..++=|-+||++|.|||-||++|.+..
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 447888888887765321 1 356667899999999999999999965
No 187
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.70 E-value=0.0063 Score=55.92 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=59.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH-HHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM-QIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~-~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
+-..++|+|..|+|||||++.+.+.. +.+..+.+-+++..... ++.++.+..-+... ....+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 56788999999999999999998754 23455667777765433 44544544322110 0011222111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 249 ---RASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 249 ---l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
.+-.+.+++ +++..||++||+..-...+..+.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REis 268 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIG 268 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHH
Confidence 123355666 48999999999976334455443
No 188
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.69 E-value=0.01 Score=54.49 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=59.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCH-HHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNL-MQIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~-~~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
.-..++|+|..|+|||||++.+.+.. ..+..+.+-+++.... .++.++++..-+... ....+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 55788999999999999999997643 3356666778776543 345665544322110 0011122211
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 249 ---RASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 ---l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
.+-.+.+++ +++..||++||+..-...+..|
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REI 271 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREI 271 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHH
Confidence 123355665 4899999999997633345554
No 189
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.69 E-value=0.012 Score=50.49 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhcccc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-------CCCC
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE----HDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS-------WQGK 244 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~-------~~~~ 244 (287)
..-.+.=|+|.+|+|||.|+-.+.-.. ... ..=..++|++....|+..++. +|++..+..... ....
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecC
Confidence 356789999999999999998775432 111 112468999999999988875 466655431100 0122
Q ss_pred CHHHHHHHH---HHHh-CCCcEEEEEeCCCC
Q 043249 245 SFEERASDI---TNTL-KHKKFVLLSDDIWE 271 (287)
Q Consensus 245 ~~~~l~~~l---~~~l-~~kr~LlVLDDvw~ 271 (287)
+.+++...| ...+ .++-=|||+|.+-.
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHH
Confidence 444444333 3333 25667999999865
No 190
>PTZ00035 Rad51 protein; Provisional
Probab=96.69 E-value=0.034 Score=49.67 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=59.9
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhcccc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC------
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE----HDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS------ 240 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~------ 240 (287)
|..+=..-.++-|+|..|+|||||+..+.-.. ... ..=..++|+.....|++.++ ..++++++.....
T Consensus 111 LgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~ 188 (337)
T PTZ00035 111 LGGGIETGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIA 188 (337)
T ss_pred hCCCCCCCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceE
Confidence 44433467899999999999999998876543 210 11235679998888888774 4445555442110
Q ss_pred -CCCCCHHHHHHHH---HHHhC-CCcEEEEEeCCCC
Q 043249 241 -WQGKSFEERASDI---TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 241 -~~~~~~~~l~~~l---~~~l~-~kr~LlVLDDvw~ 271 (287)
....+.+++...| ...+. .+--|||+|-+..
T Consensus 189 ~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 189 YARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred EEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0122334443333 23333 4566899999865
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.69 E-value=0.0054 Score=47.20 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=31.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQE 228 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 228 (287)
|-++|.+|+|||+||+.+.... .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 5689999999999999998865 11 234467788777777654
No 192
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0092 Score=52.05 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=53.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccC--CCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH--DFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDIT 254 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~--~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~ 254 (287)
..++|-+.|++|.|||+|.+.+..+. .++. .+....-+.++.. .++..-... ..+-...+-++|.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHH
Confidence 46889999999999999999999987 5543 3444444444432 333322221 2334566777788
Q ss_pred HHhCCCc--EEEEEeCCCC
Q 043249 255 NTLKHKK--FVLLSDDIWE 271 (287)
Q Consensus 255 ~~l~~kr--~LlVLDDvw~ 271 (287)
+.+.++. .++.+|+|.+
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 8887654 4566788865
No 193
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.68 E-value=0.0013 Score=53.99 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|+|.|..|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997753
No 194
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0068 Score=51.63 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=55.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEE-----EecCCCCHHHHHHHHHHHhCCCCCC----CCCCCHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWS-----VVSREPNLMQIQEDIGKRIGFSTDS----WQGKSFE 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv-----~vs~~~~~~~i~~~i~~~~~~~~~~----~~~~~~~ 247 (287)
+..+++|||..|+|||||++.+..-. +..+..+.|= ..+ .....+-..++++.++..... ....+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 56799999999999999999997754 2222222221 112 112334556677777653211 1122222
Q ss_pred HHH-HHHHHHhCCCcEEEEEeCCCC
Q 043249 248 ERA-SDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 248 ~l~-~~l~~~l~~kr~LlVLDDvw~ 271 (287)
+++ -.|.+.|.-+.=|||.|+--+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchh
Confidence 333 246778888888999998766
No 195
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.67 E-value=0.0054 Score=58.74 Aligned_cols=72 Identities=25% Similarity=0.311 Sum_probs=50.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
.-+|.-++|++|+||||||..|.... -| .++=+..|.+-+...+-..|...+..+ ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~-----------------s~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNH-----------------SV 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhc-----------------cc
Confidence 56899999999999999999998754 34 345667788777777666666655431 11
Q ss_pred hC--CCcEEEEEeCCCC
Q 043249 257 LK--HKKFVLLSDDIWE 271 (287)
Q Consensus 257 l~--~kr~LlVLDDvw~ 271 (287)
|. ++.-.||+|++.-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 21 4666778888754
No 196
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.011 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.++|.+|+||||++..+....
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999987643
No 197
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.67 E-value=0.0061 Score=49.33 Aligned_cols=23 Identities=39% Similarity=0.769 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|+|.|..|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998875
No 198
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.66 E-value=0.0088 Score=54.10 Aligned_cols=86 Identities=27% Similarity=0.335 Sum_probs=51.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l~~~l 253 (287)
.-.++.|.|.+|+|||||+..+.... . ..-...+|++... +...+.. -+++++...... ...+.+.+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~-a--~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL-A--KRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-H--hcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 45799999999999999999987765 2 2224566766543 3344322 234555422221 223444444444
Q ss_pred HHHhCCCcEEEEEeCCCC
Q 043249 254 TNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~~kr~LlVLDDvw~ 271 (287)
. ..+.-+||+|.+-.
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 3 24667899999854
No 199
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.66 E-value=0.013 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+.|+|..|+|||.|++.+.+..
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999976
No 200
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.66 E-value=0.019 Score=57.47 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=38.3
Q ss_pred CCcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+.+.+... +.....+.++|+.|+|||+||+.+.+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 456899999999998877521 2234567789999999999999997754
No 201
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.66 E-value=0.02 Score=49.53 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.+++.++|.+|+||||++..+....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999988887655
No 202
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.013 Score=52.94 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..++.++|+.|+||||++..+....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 203
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.65 E-value=0.0046 Score=47.35 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..++.+.|...-....+|.+.|.-|+||||+++.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3344444443321245699999999999999999999876
No 204
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.64 E-value=0.007 Score=55.10 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=38.9
Q ss_pred CCcccchHHHHHHHHHHHhcc------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ------------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+..++... +...+.|.++|++|+||||||+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999998877531 1124678999999999999999998765
No 205
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.63 E-value=0.0018 Score=55.83 Aligned_cols=74 Identities=20% Similarity=0.146 Sum_probs=61.0
Q ss_pred ccc-chhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 043249 12 DTI-RPILFYVGGEAKYIWGLKGNLDDLQTETENLIAKKLDLLNKVRLAEQQPRNRRTPTVELWFRRVEEIETKVETLQQ 90 (287)
Q Consensus 12 ~~v-~~l~~~l~~~~~~~~~~~~~~~~L~~~L~~l~~~l~d~~~~~~~ae~~~~~~~~~~~~~Wl~~lr~~a~d~eD~ld 90 (287)
+.+ ++|-++..+....+--++.+++.++.+|+.|+.||+.+ +++.+ ...+ ....+..++...||++|.++|
T Consensus 299 dFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~-nkh~-~~ed~a~~ii~kAyevEYVVD 370 (402)
T PF12061_consen 299 DFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPH-NKHD-TNEDCATQIIRKAYEVEYVVD 370 (402)
T ss_pred HHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccc-hhhh-hhhhHHHHHHHHHhheeeeee
Confidence 444 77777888888888888999999999999999999986 56644 2333 489999999999999999999
Q ss_pred hhH
Q 043249 91 ERD 93 (287)
Q Consensus 91 ~~~ 93 (287)
.+-
T Consensus 371 aCi 373 (402)
T PF12061_consen 371 ACI 373 (402)
T ss_pred hhh
Confidence 863
No 206
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.62 E-value=0.011 Score=54.26 Aligned_cols=98 Identities=18% Similarity=0.225 Sum_probs=57.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
.-..++|+|..|+|||||++.+.+.. +.+..+++.+.+... ..+++.+....-.... -...+...-+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 55788999999999999999987643 455667777766433 3355555433110000 0001111111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 249 ---RASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 ---l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
.+..+.+++ ++++.||++||+..-.....+|
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REi 264 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI 264 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHH
Confidence 123355665 3889999999997623334444
No 207
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.62 E-value=0.025 Score=47.47 Aligned_cols=89 Identities=21% Similarity=0.178 Sum_probs=53.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC------------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFST------------------ 238 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------------ 238 (287)
.-.++.|.|.+|+|||||+..+.....+ .-+..+|++.... ...+.+. +++++..-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 5689999999999999999986543312 2346778776443 4444433 23322110
Q ss_pred ----CCCCCCCHHHHHHHHHHHhCC---CcEEEEEeCCCC
Q 043249 239 ----DSWQGKSFEERASDITNTLKH---KKFVLLSDDIWE 271 (287)
Q Consensus 239 ----~~~~~~~~~~l~~~l~~~l~~---kr~LlVLDDvw~ 271 (287)
......+.+++...+++.++. +.-++|+|.+-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~ 132 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSA 132 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchh
Confidence 000124566777777766653 345788998753
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.035 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.++|..|+||||.+..+....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998887655
No 209
>PRK09087 hypothetical protein; Validated
Probab=96.61 E-value=0.011 Score=49.84 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.+.|+|..|+|||+|++.+....
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999988754
No 210
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.60 E-value=0.013 Score=50.45 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=62.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcc--ccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCCC----CCCCCCHHH-
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCS--EEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFSTD----SWQGKSFEE- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~--v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~~----~~~~~~~~~- 248 (287)
+-.-++|+|-.|+|||||+..+.+.. . .+.+-+.++++-+.+... ..++.+++...-..... ...+.+.-.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 44667999999999999999987764 2 123357889999988654 45566666554211100 001111111
Q ss_pred -----HHHHHHHHhC---CCcEEEEEeCCCCcccccccc
Q 043249 249 -----RASDITNTLK---HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 -----l~~~l~~~l~---~kr~LlVLDDvw~~~~~~~~i 279 (287)
.+-.+.++++ +++.|+++||+..-...+.++
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 1234666664 689999999997633344444
No 211
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.60 E-value=0.0035 Score=59.00 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=51.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEE-EEecCCCCHHHHHHHHHHHhCCC--CCCCCCCCH-----HH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIW-SVVSREPNLMQIQEDIGKRIGFS--TDSWQGKSF-----EE 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~w-v~vs~~~~~~~i~~~i~~~~~~~--~~~~~~~~~-----~~ 248 (287)
+-.-..|+|.+|+|||||++.|.+.. ...+-++.++ +-|.+...... ++-..+... ...++.... ..
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i--~~n~~~~~~ivvLIgERpeEVt---dm~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAI--TTNNPECHLMVVLVDERPEEVT---DMQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHH--hhcCCCeEEEEEEEeCchhhHH---HHHHhccceEEEECCCCCHHHHHHHHH
Confidence 44567899999999999999998864 2334455444 45565543332 222223110 001111111 12
Q ss_pred HHHHHHHHh--CCCcEEEEEeCCCC
Q 043249 249 RASDITNTL--KHKKFVLLSDDIWE 271 (287)
Q Consensus 249 l~~~l~~~l--~~kr~LlVLDDvw~ 271 (287)
++-.+.++| .++..||+||++..
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCchH
Confidence 233455555 48999999999965
No 212
>PRK08149 ATP synthase SpaL; Validated
Probab=96.59 E-value=0.0082 Score=55.03 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=57.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCC----CCCCCCH-----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFSTD----SWQGKSF----- 246 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~~----~~~~~~~----- 246 (287)
+-..++|+|..|+|||||++.+.+.. +-+..+...+.... +...+..+.+........ ...+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 55788999999999999999997743 22344444454432 455566666654322100 0011111
Q ss_pred -HHHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 247 -EERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 247 -~~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
...+..+.+++ ++|..||++||+.........+
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi 260 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDV 260 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHh
Confidence 11233455555 4899999999997633344444
No 213
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.59 E-value=0.0019 Score=55.85 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHH-hCCCCCCCC
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKR-IGFSTDSWQ 242 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~-~~~~~~~~~ 242 (287)
...+++.+... + +-+-++|..|+|||++++...... . ...| ...-++.|...+...+++ ++++ +.....
T Consensus 22 ~~~ll~~l~~~--~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~-~ie~~l~k~~~--- 91 (272)
T PF12775_consen 22 YSYLLDLLLSN--G-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQK-IIESKLEKRRG--- 91 (272)
T ss_dssp HHHHHHHHHHC--T-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHH-CCCTTECECTT---
T ss_pred HHHHHHHHHHc--C-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHH-HHhhcEEcCCC---
Confidence 35556666655 3 455799999999999999988754 2 2222 233455665544444433 3222 111000
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 243 GKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 243 ~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
. .-.--.+|+.++.+||+--
T Consensus 92 -~--------~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 92 -R--------VYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp -E--------EEEEESSSEEEEEEETTT-
T ss_pred -C--------CCCCCCCcEEEEEecccCC
Confidence 0 0000126888899999866
No 214
>PRK14974 cell division protein FtsY; Provisional
Probab=96.59 E-value=0.036 Score=49.42 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|.++|++|+||||++..+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999888887655
No 215
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.58 E-value=0.0053 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|+|++|+||||+|+.+....
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998765
No 216
>PRK00625 shikimate kinase; Provisional
Probab=96.57 E-value=0.0021 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997764
No 217
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.57 E-value=0.0074 Score=51.86 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=61.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC------------------
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFS------------------ 237 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~------------------ 237 (287)
...+++.|+|.+|+|||+++.+..... ..+.+.++||+.... ...+.+...+ ++-.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~ 94 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLS 94 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccc
Confidence 467899999999999999999987765 445889999999875 5555555533 2210
Q ss_pred CCC-----C-CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 043249 238 TDS-----W-QGKSFEERASDITNTLKH-KKFVLLSDDIWE 271 (287)
Q Consensus 238 ~~~-----~-~~~~~~~l~~~l~~~l~~-kr~LlVLDDvw~ 271 (287)
... . ...+...+...|.+.... +..-+|+|.+-.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 95 EKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 000 0 123556666777766653 467788998863
No 218
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.56 E-value=0.006 Score=57.93 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++|.+..++.+...+... ....+-|+|.+|+||||+|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999988888777654 44566799999999999999998754
No 219
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.55 E-value=0.017 Score=45.17 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|+.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998865
No 220
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.54 E-value=0.021 Score=52.96 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=63.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~---- 247 (287)
+-.-++|+|..|+|||||+..+.... . +.+-++++++-+.+... ..++.+++...-.... ....+.+.-
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45678999999999999999887765 2 33678888888877544 4456666654322110 001122221
Q ss_pred --HHHHHHHHHhC---CCcEEEEEeCCCCcccccccc
Q 043249 248 --ERASDITNTLK---HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 --~l~~~l~~~l~---~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+..+.++++ ++..||++|++..-......+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REi 256 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEV 256 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHHHHHHHHH
Confidence 12334667763 799999999996523334443
No 221
>PRK04328 hypothetical protein; Provisional
Probab=96.53 E-value=0.016 Score=49.48 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=54.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC------------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFST------------------ 238 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------------ 238 (287)
.-+++-|.|.+|+|||+|+..+.... -..-+..+|++.... +..+.+. +++++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHHH-HHHcCCCHHHHhhcCCEEEEeccccc
Confidence 56899999999999999999865433 122456788887663 4444443 33333210
Q ss_pred -------CCC---CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 043249 239 -------DSW---QGKSFEERASDITNTLKH-KKFVLLSDDIWE 271 (287)
Q Consensus 239 -------~~~---~~~~~~~l~~~l~~~l~~-kr~LlVLDDvw~ 271 (287)
... ...+.+.+...+.+.++. +.-++|+|-+-.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~ 139 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVST 139 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhH
Confidence 000 123455666667766653 445799999843
No 222
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.53 E-value=0.0022 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999997764
No 223
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.52 E-value=0.015 Score=54.21 Aligned_cols=102 Identities=9% Similarity=0.103 Sum_probs=59.2
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccc-----cCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLL-KQVNNKFCSE-----EHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS-----WQGKS 245 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~v-----~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~-----~~~~~ 245 (287)
.-.-++|.|-.|+|||||| -.+.|.. .+ ..+-..++++.+++..+...-+.+.++.-+.-... ..+.+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4456799999999999996 5555543 21 13446789999998765544344444443310000 01111
Q ss_pred HHH------HHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 246 FEE------RASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 246 ~~~------l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
... ..-.+.+++ +++..|||+||+..-...+..|
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REI 308 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHH
Confidence 111 122344555 4899999999997733345544
No 224
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.50 E-value=0.011 Score=51.00 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHH
Q 043249 162 SILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQI 226 (287)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i 226 (287)
.-++++..++..+ ..+-+.|.+|+|||+||+.+.... .. ....++.+...+..++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 3445555555543 345689999999999999998743 22 2345555555554444
No 225
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.50 E-value=0.003 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 226
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.49 E-value=0.015 Score=54.42 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=33.5
Q ss_pred CcccchHHHHHHHHHHHh---c-----cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT---E-----QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++-|.+..++.+.+... . +-...+-|-++|++|+|||++|+.+.+..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 346687766665554321 1 11245668899999999999999998865
No 227
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.49 E-value=0.003 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+...|.++|++|+||||+|+.+....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998865
No 228
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.49 E-value=0.0022 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999997765
No 229
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.49 E-value=0.025 Score=52.32 Aligned_cols=102 Identities=15% Similarity=0.244 Sum_probs=61.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~---- 247 (287)
+-.-++|+|..|+|||||+..+.... .. ++=+.++++-+.+... +.++.+++...-.... ....+.+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999876654 21 2224677788877543 4456666665322110 001122221
Q ss_pred --HHHHHHHHHh---CCCcEEEEEeCCCCccccccccc
Q 043249 248 --ERASDITNTL---KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 248 --~l~~~l~~~l---~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
..+-.+.+++ +++..||++|++..-...+..++
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 258 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVS 258 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHH
Confidence 1233467777 57999999999976233455443
No 230
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.49 E-value=0.0038 Score=55.78 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.+||.++.+..|+..+.++ .+.-+-|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999988888777666 66666799999999999999997754
No 231
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.47 E-value=0.015 Score=45.35 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=82.8
Q ss_pred Cceeeccccccc-chhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHH
Q 043249 3 GIISTFFSADTI-RPILFYVGGEAKYIWGLKGNLDDLQTETENLIAKKLDLLNKVRLAEQQPRNRRTPTVELWFRRVEEI 81 (287)
Q Consensus 3 ~~~~~~v~~~~v-~~l~~~l~~~~~~~~~~~~~~~~L~~~L~~l~~~l~d~~~~~~~ae~~~~~~~~~~~~~Wl~~lr~~ 81 (287)
+.++.+++++++ +.+...+....+-...++.-++.|..+++.|..++.+++..-..- +..-+.=+.++.+.
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~el--------d~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVEL--------DRPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhc--------CCchhHHHHHHHHH
Confidence 344555666777 889999999999999999999999999999999999987663211 12225667788888
Q ss_pred HHHHHHHHHhhHHHhhhhhccCccCccchhHhHHHHHHHHHHHHHHHHHH
Q 043249 82 ETKVETLQQERDQEIDRLCLGGFCSKDLISSYDFGKKVEKLKEEVIKLWE 131 (287)
Q Consensus 82 a~d~eD~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~ 131 (287)
..++++++..|..- ++ .++...+..+++|+++.+.+.....
T Consensus 75 L~~g~~LV~k~sk~-------~r--~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEKGKELVEKCSKV-------RR--WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHhccc-------cH--HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 88888998876421 01 3455666788888888888877664
No 232
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.47 E-value=0.011 Score=52.05 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=53.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l~~~l 253 (287)
.-+++-|+|..|+||||||-.+.... +..-..++|+.....+++.. +++++...+.. ...+.++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 56799999999999999999988765 33456789999988877654 44444421110 122334444555
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
...++ +.--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 56565 4456889998865
No 233
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.46 E-value=0.0023 Score=52.14 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998864
No 234
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.44 E-value=0.0036 Score=50.25 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 235
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.44 E-value=0.033 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++.++|++|+||||++..+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999988876654
No 236
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.44 E-value=0.032 Score=47.10 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=33.4
Q ss_pred CceEEEEEccCCCcHHHHHHH-HHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQ-VNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIG 235 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~-v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~ 235 (287)
...++.|.|..|+|||||+.. +++-. +.. ...++++ ..-+...+++.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g-~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL---QNG-YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hCC-CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 456999999999999999754 45432 222 3445555 333567777776 3443
No 237
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.43 E-value=0.014 Score=56.36 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=51.7
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKR 233 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 233 (287)
-+.++|.++..+.+...+... . .+-++|++|+||||+++.+.+.. . ...|...+++ .....+...+++.++..
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~-~n~~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--R--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVY-PNPEDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--C--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEE-eCCCCCchHHHHHHHHh
Confidence 356789998888777766654 2 44599999999999999999865 2 2234443433 23334566678888776
Q ss_pred hCC
Q 043249 234 IGF 236 (287)
Q Consensus 234 ~~~ 236 (287)
++.
T Consensus 90 ~g~ 92 (608)
T TIGR00764 90 EGR 92 (608)
T ss_pred hch
Confidence 654
No 238
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.43 E-value=0.0029 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987754
No 239
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.42 E-value=0.0093 Score=44.99 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHHhc-----cCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITE-----QKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..++|..-..+.+++.+.. ...++-|++..|..|+|||.+++.+.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4578877666666666542 2568899999999999999998888766
No 240
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.41 E-value=0.013 Score=53.66 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 043249 162 SILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW 241 (287)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~ 241 (287)
....++.+.+... ..++.|+|+-++||||+++.+.... .+. .+++..-.......
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~---------------- 78 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRI---------------- 78 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchh----------------
Confidence 4444454444433 2299999999999999997776654 122 34443322110000
Q ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCccccccccc
Q 043249 242 QGKSFEERASDITNTLKHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 242 ~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
...+....+...-..++.+|+||.|.+ ..+|+..-
T Consensus 79 ---~l~d~~~~~~~~~~~~~~yifLDEIq~-v~~W~~~l 113 (398)
T COG1373 79 ---ELLDLLRAYIELKEREKSYIFLDEIQN-VPDWERAL 113 (398)
T ss_pred ---hHHHHHHHHHHhhccCCceEEEecccC-chhHHHHH
Confidence 001111111111112788999999999 88887653
No 241
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.40 E-value=0.023 Score=56.03 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.++.++.|.+.+... +.....+-++|+.|+|||+||+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999998887631 2234678899999999999999997765
No 242
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.40 E-value=0.051 Score=44.13 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 166 QVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 166 ~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.+.+..+ ++ ..+-++|+.|+||||+|+.+-...
T Consensus 3 ~l~~~i~~~--~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 3 QLKRALEKG--RLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344455444 44 678899999999999999987765
No 243
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.40 E-value=0.0029 Score=48.96 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|.|.|..|+||||+|+.+-...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 244
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.39 E-value=0.0083 Score=57.88 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=56.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRI 234 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~ 234 (287)
+.++|.++.++.|...+... +.+-++|.+|+||||+|+.+.... . ..+|+..+|..-+ ..+...+++.++..+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPNP-EDPNNPKIRTVPAGK 103 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeCC-CcchHHHHHHHHHhc
Confidence 45789988888887766654 368899999999999999998765 2 3356777886553 347778888888766
Q ss_pred CC
Q 043249 235 GF 236 (287)
Q Consensus 235 ~~ 236 (287)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 245
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0028 Score=50.25 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=18.6
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~ 199 (287)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999986
No 246
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.36 E-value=0.0036 Score=51.62 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|+.|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998864
No 247
>PRK06217 hypothetical protein; Validated
Probab=96.36 E-value=0.0032 Score=51.12 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=25.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCC--CEEEEE
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDF--DVVIWS 215 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F--~~~~wv 215 (287)
.|.|.|++|+||||+|+.+.... .. .+| |..+|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-DI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CC-cEEEcCceeec
Confidence 48899999999999999998876 32 233 445564
No 248
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.35 E-value=0.0063 Score=54.25 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=36.7
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+.+||.+..+..++-.+.++ ...-+.|.|..|+|||||++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 35799999998887666665 5666779999999999999999643
No 249
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.023 Score=53.30 Aligned_cols=26 Identities=38% Similarity=0.718 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|.+|+||||++..+....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998887654
No 250
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.35 E-value=0.0053 Score=58.50 Aligned_cols=47 Identities=30% Similarity=0.359 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+.+++..+. -.+-+-++|+.|+||||+|+.+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999998886652 23567799999999999999997764
No 251
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.044 Score=48.32 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 157 IVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|-+.....+..+.........-+-++|++|+||||+|..+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 5677788888888887543233348899999999999999998765
No 252
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.35 E-value=0.0036 Score=51.85 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=24.9
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+..+....+.|.|+|+.|+|||||++.+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334447789999999999999999999653
No 253
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0079 Score=51.91 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHH
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQE 228 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 228 (287)
..+++..|.....+..+|+|.|.||+||+||.-.+-... ..+.|=-.++=|.-|..|+--.|+-
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccc
Confidence 456777777666688999999999999999999988877 4445544555566666666555543
No 254
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.35 E-value=0.003 Score=50.91 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|.|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998743
No 255
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.34 E-value=0.016 Score=49.89 Aligned_cols=99 Identities=11% Similarity=0.175 Sum_probs=56.5
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccccCCCCE-EEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH-
Q 043249 177 NNGIIGLYGMGGIGKTTLL-KQVNNKFCSEEHDFDV-VIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~v~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~- 248 (287)
+-.-++|+|..|+|||+|| ..+.+.. +-+. ++++-+.+... ..++.+++...-.... ....+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4467799999999999995 6565532 2233 46777777644 4456666554321110 0001111111
Q ss_pred -----HHHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 249 -----RASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 249 -----l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
.+-.+.+++ +++..||++||+..-...|..+.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 122344444 48999999999977334566654
No 256
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.33 E-value=0.0044 Score=50.96 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|.|+|++|+||||||+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998764
No 257
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.33 E-value=0.019 Score=47.82 Aligned_cols=89 Identities=22% Similarity=0.408 Sum_probs=53.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC----CCCCCCCHHH----
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFST----DSWQGKSFEE---- 248 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~----~~~~~~~~~~---- 248 (287)
-.-++|+|..|+|||+|+..+.+.. .-++.+++.+++.. ...++.+++...-.... ....+.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 3667899999999999999998865 23345888887763 34455555543211100 0001122111
Q ss_pred --HHHHHHHHh--CCCcEEEEEeCCCC
Q 043249 249 --RASDITNTL--KHKKFVLLSDDIWE 271 (287)
Q Consensus 249 --l~~~l~~~l--~~kr~LlVLDDvw~ 271 (287)
..-.+.+++ ++|..|+++||+..
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHH
Confidence 111233333 59999999999855
No 258
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.32 E-value=0.0065 Score=49.24 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=29.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEE
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSV 216 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~ 216 (287)
.++|.|+|+.|+|||||++.+.... ..+|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4788999999999999999999976 66785444444
No 259
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.006 Score=57.00 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.++||.+..++.+.+.+..+ ++ +-+-++|+.|+||||+|+.+...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHH
Confidence 45899999999888887766 44 47889999999999999998653
No 260
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.32 E-value=0.027 Score=51.82 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=59.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
+-..++|+|..|+|||||.+.+.+.. .-++++.+-+++... ..++.+..+..-+... ....+.+.-.
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 56788999999999999999998854 335778888877643 3344444333211110 0011122211
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 249 ---RASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 ---l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
.+..+.+++ ++|+.||++||+..-......+
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REi 271 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREI 271 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 123355555 4899999999997623344444
No 261
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.31 E-value=0.017 Score=47.63 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
..+|+|.|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998855
No 262
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.31 E-value=0.011 Score=54.47 Aligned_cols=99 Identities=20% Similarity=0.152 Sum_probs=52.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC---CCCCCCCHH------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFST---DSWQGKSFE------ 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~---~~~~~~~~~------ 247 (287)
.-..++|+|..|+|||||++.+.... .....+++..=-..-++..+....+....... -...+.+..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 45689999999999999999886643 12223333322123344444444443321100 000111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 248 ERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 ~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+-.+.+++ +++..||++||+..-......|
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEi 273 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRFAHAAREV 273 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHH
Confidence 1122345555 3899999999997622334443
No 263
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.049 Score=49.99 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+++++|..|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999987654
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.29 E-value=0.0033 Score=46.29 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|-|+|.+|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987765
No 265
>PRK13949 shikimate kinase; Provisional
Probab=96.29 E-value=0.0038 Score=50.08 Aligned_cols=23 Identities=43% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-|.|+|++|+||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998765
No 266
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.29 E-value=0.0039 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998765
No 267
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.004 Score=51.05 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|+|=||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 5789999999999999999998877
No 268
>PRK04182 cytidylate kinase; Provisional
Probab=96.26 E-value=0.013 Score=47.09 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999998865
No 269
>PRK10536 hypothetical protein; Provisional
Probab=96.26 E-value=0.041 Score=46.95 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.++......++.+|.+. .++.+.|..|+|||+||..+.-+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567888888888888653 489999999999999999988764
No 270
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.26 E-value=0.027 Score=51.96 Aligned_cols=101 Identities=17% Similarity=0.250 Sum_probs=63.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~---- 247 (287)
+-.-++|+|..|+|||+|+..+.... . +.+-++++++-+.+... ..++.+++...-.... ....+.+.-
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 45678999999999999999987764 2 23457888998887654 3456666554311110 001122221
Q ss_pred --HHHHHHHHHhC---CCcEEEEEeCCCCcccccccc
Q 043249 248 --ERASDITNTLK---HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 --~l~~~l~~~l~---~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+-.+.++++ ++..||++||+..-...+.+|
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REi 251 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEV 251 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHH
Confidence 12334667765 689999999997633345444
No 271
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.26 E-value=0.015 Score=52.61 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+.+++.+... ....+.|.|.||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~--~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENE--EGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHcc--CCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 345556666554 66788999999999999999999877
No 272
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.25 E-value=0.02 Score=50.74 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=52.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCC----CCCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE-PNLMQIQEDIGKRIGFST----DSWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-~~~~~i~~~i~~~~~~~~----~~~~~~~~~---- 247 (287)
.-..++|+|..|+|||||++.+.+.. +-++.+...+... -+...+....+..-+... ....+.+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-----~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-----TADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-----CCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45678999999999999999987754 2234455555543 344555555554322210 000111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCC
Q 043249 248 --ERASDITNTL--KHKKFVLLSDDIWE 271 (287)
Q Consensus 248 --~l~~~l~~~l--~~kr~LlVLDDvw~ 271 (287)
..+-.+.+++ ++|..||++||+..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 1122344554 48999999999876
No 273
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.25 E-value=0.0055 Score=48.24 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..||=|.|.+|.||||||+.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999987
No 274
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.24 E-value=0.019 Score=52.72 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=54.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCC-------CC---CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE-PNLMQIQEDIGKRIGFST-------DS---WQGKS 245 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-~~~~~i~~~i~~~~~~~~-------~~---~~~~~ 245 (287)
+-..++|+|..|+|||||++.+.+.. +.+..+...+... -...++....+..-+... .. .....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 56789999999999999999987643 2233333334332 123333333333322110 00 00111
Q ss_pred HHHHHHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 246 FEERASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 246 ~~~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
....+..+.+++ +++..||++||+......+.+|+
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REis 265 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIA 265 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHH
Confidence 122333455554 38999999999977334555554
No 275
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.24 E-value=0.0038 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46789999999999999997754
No 276
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.24 E-value=0.011 Score=50.29 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHH
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQI 226 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i 226 (287)
....+++.+.....+..+|+|.|.+|.||+||.-.+.... ..+.+=-.++=|.-|..++--.|
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcc
Confidence 4566777776655578899999999999999999988776 33332223444444555554443
No 277
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.24 E-value=0.021 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999998776
No 278
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.23 E-value=0.021 Score=47.81 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=36.3
Q ss_pred CcccchHHHHHHHHHHHhc--cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE--QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+...+.+++--.. .+....-+-+||..|+||++|++++.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 4579999888877653321 12244567899999999999999999976
No 279
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.23 E-value=0.0086 Score=53.11 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=42.7
Q ss_pred CCcccchHHHHHHHHHHHhcc----CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ----KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.++.++++++.+.+. +..-+|+-++|+.|.|||||+..+-+-.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999999753 4567899999999999999999998766
No 280
>PRK13947 shikimate kinase; Provisional
Probab=96.22 E-value=0.0044 Score=49.52 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-|.|+|++|+||||+|+.+-+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 281
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.05 Score=52.58 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+...+.|.+++..+ .+ +.+-++|..|+||||+|+.+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998766 44 457899999999999999876653
No 282
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.22 E-value=0.025 Score=45.32 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=45.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHHhC
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQ-GKSFEERASDITNTLK 258 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~l~~~l~~~l~ 258 (287)
++.|.|.+|+||||+|..+.... . . ..+++.....++ .+..+.|-.........+. -.....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 68899999999999999997653 1 1 123444444333 3455555443332222221 1122234444544444
Q ss_pred CCcEEEEEeCCCC
Q 043249 259 HKKFVLLSDDIWE 271 (287)
Q Consensus 259 ~kr~LlVLDDvw~ 271 (287)
+.. ++++|.+-.
T Consensus 76 ~~~-~VlID~Lt~ 87 (170)
T PRK05800 76 PGR-CVLVDCLTT 87 (170)
T ss_pred CCC-EEEehhHHH
Confidence 333 688888643
No 283
>PRK14530 adenylate kinase; Provisional
Probab=96.21 E-value=0.0046 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.|.|+|++|+||||+++.+....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999997765
No 284
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.046 Score=52.52 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|-+..++.|.+++..+ .-...+-++|+.|+||||+|+.+.+..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 35789988888888888765 124677789999999999999998765
No 285
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.067 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..|+.++|+.|+||||++..+....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 5799999999999999988887654
No 286
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.19 E-value=0.0042 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 287
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.19 E-value=0.0059 Score=49.68 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=48.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHH-HHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQ-EDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~-~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
...+.|+|..|.|||||++.+..-. . ..-... .+. +.....+. ...+ ++................+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i-~--~~~~~i---~ie-d~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI-P--PDERII---TIE-DTAELQLPHPNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc-C--CCCCEE---EEC-CccccCCCCCCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 4689999999999999999987754 2 111111 111 11100000 0000 000000000111122344556677
Q ss_pred hCCCcEEEEEeCCCCcccccccc
Q 043249 257 LKHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 257 l~~kr~LlVLDDvw~~~~~~~~i 279 (287)
++..+=.++++++++ .+.|+-+
T Consensus 97 lR~~pd~i~igEir~-~ea~~~~ 118 (186)
T cd01130 97 LRMRPDRIIVGEVRG-GEALDLL 118 (186)
T ss_pred hccCCCEEEEEccCc-HHHHHHH
Confidence 777777888999998 6665543
No 288
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.18 E-value=0.0067 Score=51.64 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEE-------EecCCCCHHHH--HHHHHHHhCCC
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWS-------VVSREPNLMQI--QEDIGKRIGFS 237 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv-------~vs~~~~~~~i--~~~i~~~~~~~ 237 (287)
+++..|-++||+|.||||..+.++.+. ..+..-..++-. ....+.|+.+. .++.+++.++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 466788899999999999999999887 322221122211 12233444443 45777876653
No 289
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.18 E-value=0.01 Score=53.30 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+.+++..+. -.+.+-++|.+|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999887652 34567899999999999999987764
No 290
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.18 E-value=0.07 Score=49.04 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.++|..|+||||++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998886544
No 291
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.18 E-value=0.0085 Score=47.29 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=27.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEe
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVV 217 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v 217 (287)
|++|+|+.|+|||||+..+.... + ...+...+.-+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l-~-~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL-K-ARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-H-hcCCeEEEEecc
Confidence 58999999999999999999976 3 234555544443
No 292
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.17 E-value=0.0075 Score=51.09 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=38.1
Q ss_pred CcccchHHHHH---HHHHHHhcc----CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILD---QVWRCITEQ----KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~---~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|.++.+. -|++.|.++ +..++-|..+|++|.|||.+|+++.|..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 45789887654 467777765 3567889999999999999999998865
No 293
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.015 Score=54.78 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=46.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITN 255 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 255 (287)
...+.+-++|++|+|||.||+++.+.. ..+|-.+.+ . +++.. +-..+...+...+..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~--------~l~sk-------~vGesek~ir~~F~~ 330 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S--------ELLSK-------WVGESEKNIRELFEK 330 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H--------HHhcc-------ccchHHHHHHHHHHH
Confidence 356688999999999999999999954 444533221 1 11111 112233344444555
Q ss_pred HhCCCcEEEEEeCCCC
Q 043249 256 TLKHKKFVLLSDDIWE 271 (287)
Q Consensus 256 ~l~~kr~LlVLDDvw~ 271 (287)
..+...+.|.+|++.+
T Consensus 331 A~~~~p~iiFiDEiDs 346 (494)
T COG0464 331 ARKLAPSIIFIDEIDS 346 (494)
T ss_pred HHcCCCcEEEEEchhh
Confidence 5567888999998866
No 294
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.17 E-value=0.0049 Score=48.15 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.++|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.054 Score=48.87 Aligned_cols=26 Identities=42% Similarity=0.632 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++.++|+.|+||||++..+....
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999987655
No 296
>PRK13975 thymidylate kinase; Provisional
Probab=96.16 E-value=0.0055 Score=50.13 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..|.|.|+.|+||||+++.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999977
No 297
>PRK05642 DNA replication initiation factor; Validated
Probab=96.16 E-value=0.018 Score=48.78 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=27.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEec
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVS 218 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 218 (287)
...+.|+|..|+|||.|++.+.+.. ..+ -..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~~~--~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-EQR--GEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhC--CCcEEEeeHH
Confidence 3678899999999999999998865 212 2345666653
No 298
>PRK15453 phosphoribulokinase; Provisional
Probab=96.15 E-value=0.067 Score=46.27 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=43.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCE-EEEEEecC--CCCHHHHHHHHH--HHhCC--CCCCCCCCCHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDV-VIWSVVSR--EPNLMQIQEDIG--KRIGF--STDSWQGKSFEER 249 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~-~~wv~vs~--~~~~~~i~~~i~--~~~~~--~~~~~~~~~~~~l 249 (287)
+..+|+|.|..|+||||+++.+.... .. ... .+.++-.. .++...+-..+. +.-+. ..-+....+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if-~~---~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF-RR---ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hh---cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 66899999999999999999998655 21 111 22222211 123333322221 11221 1112355677778
Q ss_pred HHHHHHHhC
Q 043249 250 ASDITNTLK 258 (287)
Q Consensus 250 ~~~l~~~l~ 258 (287)
.+.|+.+.+
T Consensus 80 ~~~l~~l~~ 88 (290)
T PRK15453 80 EQLFREYGE 88 (290)
T ss_pred HHHHHHHhc
Confidence 888887665
No 299
>PRK06620 hypothetical protein; Validated
Probab=96.15 E-value=0.014 Score=48.74 Aligned_cols=49 Identities=22% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCcccch-HH-HHHHHHHHHhccCCCc--eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQ-ES-ILDQVWRCITEQKKNN--GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr-~~-~~~~l~~~L~~~~~~~--~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.++|- .. ....+.++-...+.+. ..+-|+|++|+|||+|++.+.+..
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 4456776 22 3333333332111122 568899999999999999987754
No 300
>PF14516 AAA_35: AAA-like domain
Probab=96.14 E-value=0.12 Score=46.12 Aligned_cols=111 Identities=16% Similarity=0.250 Sum_probs=69.2
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC-----CCHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE-----PNLMQIQED 229 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-----~~~~~i~~~ 229 (287)
+..|.|...-+++.+.|..+ ...+.|.|+..+|||||...+.+.. + +..+. .+++.+..- .+...+++.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~~-~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGYR-CVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHH-H-HCCCE-EEEEEeecCCCcccCCHHHHHHH
Confidence 44578886666677767653 3688999999999999999998876 3 23554 446765541 245555555
Q ss_pred HH----HHhCCCCCC---C--CCCCHHHHHHHHHHHh-C--CCcEEEEEeCCCC
Q 043249 230 IG----KRIGFSTDS---W--QGKSFEERASDITNTL-K--HKKFVLLSDDIWE 271 (287)
Q Consensus 230 i~----~~~~~~~~~---~--~~~~~~~l~~~l~~~l-~--~kr~LlVLDDvw~ 271 (287)
++ ++++....- + ...+.......+.+++ . +++.+|+||+|..
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 54 445442100 0 0112233344455543 2 6899999999976
No 301
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.0044 Score=52.10 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=54.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhc-----------c----------ccCCCCEEEEEEecCCCC------------H
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFC-----------S----------EEHDFDVVIWSVVSREPN------------L 223 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~-----------~----------v~~~F~~~~wv~vs~~~~------------~ 223 (287)
.-..++|+|..|+|||||.+.+..-.. . +-+++....|-+|-++.. .
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 567899999999999999999864220 0 112223445665544321 2
Q ss_pred HHHHHHHHHHhCCCCC---CCCCC--CHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 224 MQIQEDIGKRIGFSTD---SWQGK--SFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 224 ~~i~~~i~~~~~~~~~---~~~~~--~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.....++++.++.... .+... ...++ -.|.+.|...+=+|+||+=..
T Consensus 108 ~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQR-VaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQR-VAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred HHHHHHHHHHcCCcchhhcCccccChHHHHH-HHHHHHHhcCCCEEEEcCCcc
Confidence 3466777777776321 11111 22233 245666666666777887554
No 302
>PRK13695 putative NTPase; Provisional
Probab=96.14 E-value=0.0084 Score=48.14 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=25.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEE
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWS 215 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv 215 (287)
.|.|.|.+|+|||||++.+++.. .. ..|...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l-~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL-KE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH-CCCeEEEEE
Confidence 47899999999999999998876 32 235444454
No 303
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.14 E-value=0.013 Score=48.89 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|+|+|-||+||||+|..+....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 68999999999999999955544
No 304
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.036 Score=48.00 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=37.2
Q ss_pred CcccchHHHHHHHHHHHhc----------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++-|.+..++.|.+...- ....++=|.++|++|.||+.||++|....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 4466888888888776432 12347888999999999999999998865
No 305
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.0083 Score=57.35 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+++..+ ++ +.+-++|+.|+||||+|+.+.+..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998876 44 456899999999999999998764
No 306
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.13 E-value=0.021 Score=52.64 Aligned_cols=103 Identities=10% Similarity=0.120 Sum_probs=64.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccC--CCC---------EEEEEEecCCCCHHHHHHHHHHHhC-CCCC----C
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH--DFD---------VVIWSVVSREPNLMQIQEDIGKRIG-FSTD----S 240 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~--~F~---------~~~wv~vs~~~~~~~i~~~i~~~~~-~~~~----~ 240 (287)
+-.-++|+|-.|+|||||+..+.+.. +... -.| .++++.+++.....+.+...+..-+ .... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 45678999999999999999988765 2100 022 6778888888666666666666544 2100 0
Q ss_pred CCCCCHH------HHHHHHHHHhC---CCcEEEEEeCCCCccccccccc
Q 043249 241 WQGKSFE------ERASDITNTLK---HKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 241 ~~~~~~~------~l~~~l~~~l~---~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
..+.+.- ..+..+.++++ ++..||++||+..-...+..|.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REis 267 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVS 267 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHH
Confidence 0111111 12234667776 5999999999966233455443
No 307
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=96.13 E-value=0.019 Score=52.96 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=56.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFST-----DSWQGKSFE--- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~-----~~~~~~~~~--- 247 (287)
.-..++|+|..|+|||||++.+.+.. ..+..+...+.... ....+...+...-+... ...+.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45678999999999999999887643 23455444555443 34455555544322210 000111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 248 --ERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 --~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+..+.+++ +++..||++||+..-......+
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REi 277 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREI 277 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHH
Confidence 1123355655 4899999999997633344444
No 308
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.12 E-value=0.036 Score=49.07 Aligned_cols=73 Identities=18% Similarity=0.364 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhccC-CCceEEEEEccCCCcHHHHHHHHHHHhcccc--CCC---CEEEEEEecCCCCHHHHHHHHHHHh
Q 043249 161 ESILDQVWRCITEQK-KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE--HDF---DVVIWSVVSREPNLMQIQEDIGKRI 234 (287)
Q Consensus 161 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~--~~F---~~~~wv~vs~~~~~~~i~~~i~~~~ 234 (287)
+...+.|.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+.. +.. ..+ ..-+|-+-+.+.-...++.+|..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L-~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL-KEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH-hcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 445667777777653 578999999999999999999999887 333 112 2233444443333445666666554
No 309
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.12 E-value=0.022 Score=50.65 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++.+.....+..+|+|.|.+|+|||||+..+....
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555555434478899999999999999999987766
No 310
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.12 E-value=0.016 Score=46.15 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|.|.|+.|+||||+|+.+-+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999997754
No 311
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0047 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.554 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|..|+|||||++.+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 567899999999999999999864
No 312
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.032 Score=51.88 Aligned_cols=82 Identities=23% Similarity=0.245 Sum_probs=53.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
.+.-+.+.|++|+|||+||..+..+. .|..+ .+- ++++ .-..++......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFv---Kii---Spe~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFV---KII---SPED---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeE---EEe---ChHH---------------ccCccHHHHHHHHHHH
Confidence 45666788999999999999997754 55432 211 1111 1123444444444444
Q ss_pred h----CCCcEEEEEeCCCCcccccccccccCCC
Q 043249 257 L----KHKKFVLLSDDIWESEIDLTKLGVPLLT 285 (287)
Q Consensus 257 l----~~kr~LlVLDDvw~~~~~~~~i~~~~p~ 285 (287)
+ +..--.||+||+.. -.+|-.||+-|.+
T Consensus 591 F~DAYkS~lsiivvDdiEr-LiD~vpIGPRfSN 622 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIER-LLDYVPIGPRFSN 622 (744)
T ss_pred HHHhhcCcceEEEEcchhh-hhcccccCchhhH
Confidence 4 46667899999998 8999999887654
No 313
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.12 E-value=0.067 Score=43.60 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999876
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.12 E-value=0.014 Score=51.30 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++.+........+|+|.|.+|+|||||+..+....
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554444478999999999999999999987765
No 315
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.12 E-value=0.011 Score=49.16 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|+|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997765
No 316
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.11 E-value=0.011 Score=48.58 Aligned_cols=42 Identities=29% Similarity=0.312 Sum_probs=30.6
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
++++|.+..+..+.-.... ..-+.++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 3578888888777555543 35788999999999999999864
No 317
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.11 E-value=0.0078 Score=57.03 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=26.9
Q ss_pred HHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 169 RCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 169 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.|......+.+|+|.|..|.||||||+.+....
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3344444467899999999999999999997753
No 318
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.08 E-value=0.008 Score=49.78 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|+++|..|+|||||...+....
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999998764
No 319
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.08 E-value=0.029 Score=46.54 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|+|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999997754
No 320
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.08 E-value=0.052 Score=50.65 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...|++++|..|+||||++..+....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34799999999999999999998765
No 321
>PRK14527 adenylate kinase; Provisional
Probab=96.08 E-value=0.0067 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|.|+|.+|+||||+|+.+....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 322
>PRK05922 type III secretion system ATPase; Validated
Probab=96.07 E-value=0.045 Score=50.34 Aligned_cols=98 Identities=13% Similarity=0.210 Sum_probs=55.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFSTD----SWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~~----~~~~~~~~---- 247 (287)
+-..++|+|..|+|||||.+.+.+.. +.+....+.++..- .....+.+.......... ...+.+..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45668999999999999999997643 23444444444432 233444444433322110 00111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 248 --ERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 --~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+-.+.+++ +++..||++||+..-......+
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REi 266 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEV 266 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 1223356666 4899999999997633344444
No 323
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.06 E-value=0.046 Score=53.78 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=58.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASD 252 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~ 252 (287)
..-+++-|+|.+|+|||||+-.+.-.. ...=..++|+.....+++. .+++++..... ....+.++....
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~ 129 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEI 129 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHH
Confidence 356888999999999999997755433 1223567899888877743 66777653211 112344555556
Q ss_pred HHHHhC-CCcEEEEEeCCCC
Q 043249 253 ITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 253 l~~~l~-~kr~LlVLDDvw~ 271 (287)
+...++ ++--|||+|-|-.
T Consensus 130 i~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHHhhcCCCeEEEEcchhh
Confidence 666665 4667899999864
No 324
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.06 E-value=0.0073 Score=49.66 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|.+|+||||+|+.+....
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 325
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.05 E-value=0.0056 Score=52.15 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 5689999999999999999999863
No 326
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.05 E-value=0.02 Score=46.61 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.05 E-value=0.027 Score=52.36 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=53.8
Q ss_pred HhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHH
Q 043249 171 ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFE 247 (287)
Q Consensus 171 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~ 247 (287)
|..+=..-.++.|.|.+|+|||||+..+.... . + .-..++|++... +...+... +++++..... ....+.+
T Consensus 73 LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~-a-~-~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~ 146 (446)
T PRK11823 73 LGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL-A-A-AGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLE 146 (446)
T ss_pred hcCCccCCEEEEEECCCCCCHHHHHHHHHHHH-H-h-cCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHH
Confidence 43332345799999999999999999987765 2 2 223566776544 34444332 4555542111 1123455
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 248 ERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 248 ~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+...+.+ .+.=+||+|.+-.
T Consensus 147 ~i~~~i~~---~~~~lVVIDSIq~ 167 (446)
T PRK11823 147 AILATIEE---EKPDLVVIDSIQT 167 (446)
T ss_pred HHHHHHHh---hCCCEEEEechhh
Confidence 44444432 3556899999854
No 328
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.05 E-value=0.0057 Score=47.18 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 158 VGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
||....++++.+.+..-......|-|.|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 455666666666665422245667899999999999999999976
No 329
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.04 E-value=0.0053 Score=47.40 Aligned_cols=23 Identities=48% Similarity=0.787 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 330
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.04 E-value=0.01 Score=52.87 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=35.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+.++|.+..++.+.-.+... ...-+-+.|.+|+||||+|+.+-+-
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999988877555434 3455889999999999999998553
No 331
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.03 E-value=0.04 Score=50.55 Aligned_cols=98 Identities=22% Similarity=0.328 Sum_probs=55.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCC----CCCCCCH-HH--
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFSTD----SWQGKSF-EE-- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~~----~~~~~~~-~~-- 248 (287)
+-..++|+|..|+|||||++.+.... +-+....+.+.+.. ...++.++.+..-+.... ...+.+. ..
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~-----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT-----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 45688999999999999999887643 12333334444433 344455555443222100 0011111 11
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 249 ---RASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 ---l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
.+..+.+++ +++..||++||+..-...+..+
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REi 249 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREI 249 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 223356666 4899999999997633344444
No 332
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.006 Score=49.31 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998875
No 333
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.029 Score=51.03 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCcccchHHHHH-HHHH-HHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC
Q 043249 154 DRTIVGQESILD-QVWR-CITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR 219 (287)
Q Consensus 154 ~~~~vGr~~~~~-~l~~-~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 219 (287)
++.++|-.+... .+.. +-..++..-..+-|||..|+|||.|++++.+.. ..+......++++.
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~s 151 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTS 151 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccH
Confidence 344566544332 2222 222233346788999999999999999999976 44444333445443
No 334
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.02 E-value=0.0065 Score=44.62 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~ 199 (287)
.-..++|+|..|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34688999999999999999975
No 335
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.02 E-value=0.0071 Score=48.60 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...|.|+|+.|+||||+++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999998764
No 336
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.01 E-value=0.076 Score=43.12 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=48.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCC--------CEEEEEEecCCCCHHHHHHHHHHHhCCCC-----------
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF--------DVVIWSVVSREPNLMQIQEDIGKRIGFST----------- 238 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F--------~~~~wv~vs~~~~~~~i~~~i~~~~~~~~----------- 238 (287)
-.+.-|+|.+|+||||++..+.... -....| ..+.|+....+ ...+.+.+........
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~-~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAAL-ATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHH-HT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecc
Confidence 3588899999999999999988776 322223 24666665554 4344444333222100
Q ss_pred ---------CCCCCCCHHHHHHHHHHHhCC--CcEEEEEeCCCC
Q 043249 239 ---------DSWQGKSFEERASDITNTLKH--KKFVLLSDDIWE 271 (287)
Q Consensus 239 ---------~~~~~~~~~~l~~~l~~~l~~--kr~LlVLDDvw~ 271 (287)
............+.+.+.+.. +--++|+|.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 000011123445566666664 467999998765
No 337
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=96.01 E-value=0.063 Score=49.44 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=56.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC----CCCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFST----DSWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~----~~~~~~~~~---- 247 (287)
+-..++|+|..|+|||||.+.+.+.. +.+....+.+.... ....+.++......... ....+.+..
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~~-----~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARGA-----SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCCC-----CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 55688999999999999999998754 23455555565543 34455544443321110 001111111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 248 --ERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 --~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+..+.+++ ++++.|+++|++..-...+..+
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei 254 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREI 254 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCchHHHHHHHHH
Confidence 1223355555 3789999999997622334443
No 338
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.00 E-value=0.022 Score=50.77 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=46.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQE 228 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 228 (287)
..++|.++....+...+..+ +.+-+.|.+|+|||+||+.+.... .. ...+|....+..+.++.-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhcC
Confidence 34789888888877777655 567799999999999999998866 22 345666666666665543
No 339
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.00 E-value=0.0062 Score=50.17 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=57.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEE-------------------ecCCC----------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSV-------------------VSREP---------------- 221 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~-------------------vs~~~---------------- 221 (287)
+-.|++|+|+.|+|||||.+.+..-. ... .-.+|+. |=|.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE-~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE-EPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc-CCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 56799999999999999999996533 111 1233331 11222
Q ss_pred ---------CHHHHHHHHHHHhCCCCC---CCC-CCCHHHHHHHHHHHhCCCcEEEEEeCCCCcccc
Q 043249 222 ---------NLMQIQEDIGKRIGFSTD---SWQ-GKSFEERASDITNTLKHKKFVLLSDDIWESEID 275 (287)
Q Consensus 222 ---------~~~~i~~~i~~~~~~~~~---~~~-~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~~~~ 275 (287)
..++...++++.++..+. .+. -+.-++..-.|.+.|.-++=++.+|+..+ ..|
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTS-ALD 168 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTS-ALD 168 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcc-cCC
Confidence 133455566666665321 111 12223344568889998888999999988 554
No 340
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.011 Score=55.62 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=46.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
.+.=|-+||++|+|||-||++|.|.. ..+| ++|-.. +++.. +-..++..+....++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNk-----------YVGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNK-----------YVGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHH-----------HhhhHHHHHHHHHHHh
Confidence 45667899999999999999999965 5566 333221 22211 1122344444444555
Q ss_pred hCCCcEEEEEeCCCC
Q 043249 257 LKHKKFVLLSDDIWE 271 (287)
Q Consensus 257 l~~kr~LlVLDDvw~ 271 (287)
=..-.|+|.+|++..
T Consensus 601 R~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDA 615 (802)
T ss_pred hcCCCeEEEecchhh
Confidence 557789999998864
No 341
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.98 E-value=0.0063 Score=46.58 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|+|||||.+.+....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34689999999999999999987644
No 342
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.98 E-value=0.0053 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|+|+.|+||||+|+.+-...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998764
No 343
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.98 E-value=0.01 Score=56.99 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+++..+. -..-+-++|+.|+||||+|+.+.+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999887662 23457899999999999999997754
No 344
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.97 E-value=0.027 Score=51.98 Aligned_cols=102 Identities=15% Similarity=0.256 Sum_probs=62.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
+-.-++|+|..|+|||||+..+.... . ..+=.+++++-+++... +.++++++...-.... ....+.+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45678999999999999999987654 2 22234777888877543 4556666654311110 0011222211
Q ss_pred ---HHHHHHHHh---CCCcEEEEEeCCCCccccccccc
Q 043249 249 ---RASDITNTL---KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 249 ---l~~~l~~~l---~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
.+-.+.+++ +++..||++||+..-...+.++.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 257 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVS 257 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHH
Confidence 234467777 36899999999976334455543
No 345
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.96 E-value=0.073 Score=49.62 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccC----CCCE---------------EEEEE--
Q 043249 158 VGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH----DFDV---------------VIWSV-- 216 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~---------------~~wv~-- 216 (287)
+|.+..- .|.+-|.-+-.--.-|++||+.|+|||||.+.+|.+...... |-.+ ..|..
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence 3444433 444444433224467899999999999999999987621111 1111 11110
Q ss_pred e---cCCCCHHHHHHHHHHHhCCCCC----CCCCCCHHHHHHHHHHHhC-CCcEEEEEeCCCCccccccc
Q 043249 217 V---SREPNLMQIQEDIGKRIGFSTD----SWQGKSFEERASDITNTLK-HKKFVLLSDDIWESEIDLTK 278 (287)
Q Consensus 217 v---s~~~~~~~i~~~i~~~~~~~~~----~~~~~~~~~l~~~l~~~l~-~kr~LlVLDDvw~~~~~~~~ 278 (287)
+ -.+-...+..+.|+.+++.... +....+..+....+...+. ...-|||||+-.+ ..+.+.
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn-hLDi~t 544 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN-HLDIET 544 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc-CCCchh
Confidence 0 0011355677888888876421 1222333333444444443 7789999999888 555443
No 346
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.95 E-value=0.014 Score=55.72 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+.|.+..+.|.++.-.......+|.|+|+.|+||||+|+.+....
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 445677777776666655555567799999999999999999998876
No 347
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.0069 Score=47.80 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 589999999999999999887654
No 348
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.92 E-value=0.03 Score=51.29 Aligned_cols=98 Identities=21% Similarity=0.306 Sum_probs=55.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
+-..++|+|..|+|||||++.+.+.. +.+..+.+.+.+... ..++.+.....-.... ....+.+...
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 45678999999999999999887643 223445556666433 3444444443311100 0011121111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 249 ---RASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 ---l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
.+-.+.+++ +++..||++||+..-...+..+
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REi 246 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREI 246 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHH
Confidence 123345555 4899999999997623334443
No 349
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.92 E-value=0.087 Score=46.70 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999987765
No 350
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.92 E-value=0.0057 Score=52.97 Aligned_cols=24 Identities=38% Similarity=0.724 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.|+|+|-||+||||++..+....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 468999999999999998886654
No 351
>PLN02200 adenylate kinase family protein
Probab=95.91 E-value=0.0091 Score=50.50 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997755
No 352
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.91 E-value=0.0087 Score=45.33 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhccccCCCC
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKFCSEEHDFD 210 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~v~~~F~ 210 (287)
+-|+|.+|+||||+|+.+.... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5689999999999999998865 55664
No 353
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.014 Score=57.12 Aligned_cols=45 Identities=22% Similarity=0.547 Sum_probs=37.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+.++||+++++++++.|....++.+| .+|.+|||||.++.-+...
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~r 214 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQR 214 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHH
Confidence 45799999999999999877555555 6899999999987766654
No 354
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.88 E-value=0.0069 Score=48.05 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.2
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999764
No 355
>PRK13948 shikimate kinase; Provisional
Probab=95.88 E-value=0.01 Score=48.13 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.++||.|+||||+++.+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999998765
No 356
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.87 E-value=0.019 Score=47.85 Aligned_cols=53 Identities=26% Similarity=0.266 Sum_probs=32.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhcc----ccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCS----EEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~----v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
+..|.|++|.||||++..+...... ....-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999999766666554301 1133445555555555567777777776
No 357
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.87 E-value=0.097 Score=46.68 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=58.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHh----CCCC-------CCCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRI----GFST-------DSWQGK 244 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~----~~~~-------~~~~~~ 244 (287)
+-..++|.|..|+|||+|++.+.+.. +-++++++-+.+..+ +.++++++-+.. +.+. ....++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~ 230 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNM 230 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCC
Confidence 45688999999999999999987753 445788888877543 344555543211 1100 001222
Q ss_pred CHHHH------HHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 245 SFEER------ASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 245 ~~~~l------~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..... .-.+.+++ .++..|+++|++..-.....+|
T Consensus 231 p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REI 273 (369)
T cd01134 231 PVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREI 273 (369)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHH
Confidence 22111 12345555 3899999999985413334433
No 358
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.83 E-value=0.05 Score=50.47 Aligned_cols=103 Identities=9% Similarity=0.096 Sum_probs=61.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCC--EEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHH--
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFD--VVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFE-- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~--~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~-- 247 (287)
+-.-++|+|-.|+|||||+..+.+.. .....+. .++++.+++..+ +.++.+++...-.... ....+.+.-
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 45678999999999999999988865 3221121 667777877543 4456666654321110 000111111
Q ss_pred ----HHHHHHHHHhC---CCcEEEEEeCCCCccccccccc
Q 043249 248 ----ERASDITNTLK---HKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 248 ----~l~~~l~~~l~---~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
..+..+.++++ +++.||++||+..-...+.+|+
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIs 258 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREIS 258 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHH
Confidence 12234677776 7889999999976334455553
No 359
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.83 E-value=0.0087 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|+|..|+|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 588999999999999999999865
No 360
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.82 E-value=0.0078 Score=44.73 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 361
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.82 E-value=0.0088 Score=47.89 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|.|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998876
No 362
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.82 E-value=0.033 Score=51.05 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=55.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC----CCCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFST----DSWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~----~~~~~~~~~---- 247 (287)
+-..++|+|..|+|||||++.+.+.. +-+..+...+.+.. ...++..+.+.+-+... ....+.+..
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~-----~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNA-----KADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-----CCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 56789999999999999999887643 22333334455443 23344444443311110 000112111
Q ss_pred --HHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 248 --ERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 --~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+..+.+++ +++..||++||+..-...+..+
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEi 246 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREI 246 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHH
Confidence 1223455665 3899999999997633345544
No 363
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.82 E-value=0.01 Score=46.96 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|++|+|+-|+|||||...+....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4799999999999999999997766
No 364
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.81 E-value=0.044 Score=50.45 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=54.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCH-HHHHHHHHHH-hCCCC--CCCCCCCHH-----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNL-MQIQEDIGKR-IGFST--DSWQGKSFE----- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~-~~i~~~i~~~-~~~~~--~~~~~~~~~----- 247 (287)
+-..++|+|..|+|||||++.+.... +-+..+...+++.... .+..+..+.. +.... ....+.+..
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~-----~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~ 230 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGC-----LAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG 230 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc-----CCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH
Confidence 55788999999999999999998643 2345555556555443 2332322211 00000 000111111
Q ss_pred -HHHHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 248 -ERASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 248 -~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
..+..+.+++ +++..||++||+..-...+..|+
T Consensus 231 ~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~ 266 (434)
T PRK08472 231 AFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIG 266 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHH
Confidence 1123355555 48999999999976333455553
No 365
>PRK13946 shikimate kinase; Provisional
Probab=95.80 E-value=0.0098 Score=48.32 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.|.++|+.|+||||+++.+....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998865
No 366
>PRK06820 type III secretion system ATPase; Validated
Probab=95.80 E-value=0.005 Score=56.60 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=53.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
+-..++|+|..|+|||||++.+.... +-+..+...+.+... ...+.+..+..-.... ....+.+.-.
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~~-----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~ 236 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCADS-----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLK 236 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhccC-----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHH
Confidence 45678999999999999999887643 334555566666522 2222222221100000 0011111111
Q ss_pred ---HHHHHHHHhC--CCcEEEEEeCCCCcccccccc
Q 043249 249 ---RASDITNTLK--HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 ---l~~~l~~~l~--~kr~LlVLDDvw~~~~~~~~i 279 (287)
.+..+.++++ ++..||++||+..-.....+|
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REi 272 (440)
T PRK06820 237 GLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREI 272 (440)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHHH
Confidence 2234555554 899999999997633344444
No 367
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.79 E-value=0.078 Score=45.53 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=42.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC--CCCHHHHHHHHHHHh----CCCCCCCCCCCHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR--EPNLMQIQEDIGKRI----GFSTDSWQGKSFEERASDI 253 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~--~~~~~~i~~~i~~~~----~~~~~~~~~~~~~~l~~~l 253 (287)
+|+|.|..|+||||+++.+.... ..... ..+.++-.. .++-...-+.+.... +...-+....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l-~~~g~--~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF-AREGI--HPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HhcCC--ceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999988765 22111 122222111 122222222222221 1111113456677777777
Q ss_pred HHHhCCC
Q 043249 254 TNTLKHK 260 (287)
Q Consensus 254 ~~~l~~k 260 (287)
+.+.+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7776654
No 368
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.78 E-value=0.0067 Score=50.36 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 457899999999999999998765
No 369
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.78 E-value=0.083 Score=49.72 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=61.9
Q ss_pred HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC-------
Q 043249 167 VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTD------- 239 (287)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~------- 239 (287)
+=++|..+=..-+++-|.|.+|+|||||+..+..... .+=+.+++++..+ +..++.+.+ ++++....
T Consensus 252 lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~ 325 (484)
T TIGR02655 252 LDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGL 325 (484)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCc
Confidence 3333444334668999999999999999999876541 2234556655544 566776664 55553211
Q ss_pred ------CCCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 043249 240 ------SWQGKSFEERASDITNTLKH-KKFVLLSDDIWE 271 (287)
Q Consensus 240 ------~~~~~~~~~l~~~l~~~l~~-kr~LlVLDDvw~ 271 (287)
.....+.+.....+.+.+.. +.-++|+|.+-.
T Consensus 326 l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 326 LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 11223446667777777753 556789999864
No 370
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.11 Score=49.49 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=36.1
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCC
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF 209 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F 209 (287)
+++=|.++-+.+|-+...-+ -...+=|-.+|++|+||||+|+++.+.. +..|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe
Confidence 34345776666665444321 1356677899999999999999999965 5555
No 371
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.76 E-value=0.022 Score=52.26 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCcccchHHHHHHHHHHHhc-------c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITE-------Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~-------~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+...+.. . ......+.++|++|+|||+||+.+....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999988877554421 1 0123568899999999999999998754
No 372
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.75 E-value=0.12 Score=43.80 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=56.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR-EPNLMQIQEDIGKRIGFSTDSWQ-GKSFEERASDIT 254 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~-~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~l~~~l~ 254 (287)
+.+++.++|.-|.|||++.|+..... . =+-++-|.++. ..+...+...|+..+.... ... .....+....|.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHHHH
Confidence 56799999999999999999655443 1 11122255544 4667788999998887621 111 112333444455
Q ss_pred HHhC-CCc-EEEEEeCCCC
Q 043249 255 NTLK-HKK-FVLLSDDIWE 271 (287)
Q Consensus 255 ~~l~-~kr-~LlVLDDvw~ 271 (287)
...+ ++| ..++.||...
T Consensus 124 al~~~g~r~v~l~vdEah~ 142 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHD 142 (269)
T ss_pred HHHHhCCCCeEEeehhHhh
Confidence 4443 677 8999998755
No 373
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.75 E-value=0.016 Score=45.27 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.6
Q ss_pred EEccCCCcHHHHHHHHHHHh
Q 043249 183 LYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 183 I~G~gGvGKTtLa~~v~~~~ 202 (287)
|+|++|+||||+|+.+....
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 78999999999999998876
No 374
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.74 E-value=0.0081 Score=47.10 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-|.++|.+|+|||||+..+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999997643
No 375
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.74 E-value=0.021 Score=53.85 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEE
Q 043249 157 IVGQESILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSV 216 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~ 216 (287)
+.--..-++++-.||... ....+++.+.|++|+||||.++.+.+.. .|+.+-|.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 333455677777787653 2345799999999999999999998865 577777864
No 376
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.72 E-value=0.046 Score=47.20 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=70.7
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEE-EecCCCCHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWS-VVSREPNLMQIQEDIGKR 233 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv-~vs~~~~~~~i~~~i~~~ 233 (287)
+.++|.... .++..++......-+...++|+.|+|||+-++.+.+.. +.+|. ..+..++...++..|+..
T Consensus 72 ~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~--------p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 72 PDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN--------PNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred ccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC--------ccceeecCChhhHHHHHHHHHHHH
Confidence 445655433 23344444333344588899999999999999998865 44555 677778888887777776
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 234 IGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.... ...........+...+.+..-+|+.|+-..
T Consensus 143 ~~~~----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~ 176 (297)
T COG2842 143 AFGA----TDGTINDLTERLMIRLRDTVRLIIVDEADR 176 (297)
T ss_pred Hhcc----cchhHHHHHHHHHHHHccCcceeeeehhhc
Confidence 5542 233455566667777788888888888765
No 377
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.70 E-value=0.0086 Score=49.76 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|.|-||+||||++..+..-.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 479999999999999888876554
No 378
>PLN02796 D-glycerate 3-kinase
Probab=95.69 E-value=0.012 Score=52.41 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+-+|+|.|..|+|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 56789999999999999999998876
No 379
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.69 E-value=0.0094 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 380
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.68 E-value=0.017 Score=49.00 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEccCCCcHHHHHHHHHHHh
Q 043249 183 LYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 183 I~G~gGvGKTtLa~~v~~~~ 202 (287)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987
No 381
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.017 Score=57.41 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.|.+++..+ ++ +.+-++|..|+||||+|+.+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999998876 44 457899999999999999997765
No 382
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.68 E-value=0.012 Score=46.71 Aligned_cols=24 Identities=42% Similarity=0.699 Sum_probs=22.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 383
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.021 Score=51.24 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|-+...+.+...+..+. -..-+-|+|..|+||||+|..+....
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 468999999999999887662 33468899999999999999988765
No 384
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.67 E-value=0.044 Score=48.19 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=68.5
Q ss_pred CcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHH-HHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQ-IQEDIG 231 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~-i~~~i~ 231 (287)
..++|-.++..++-++|... ...-.-+.|+|+.|.|||+|.-.+..+..+..++| .-|......-..+ .+++|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 45789888888888887643 22445567999999999999999888743444554 4455555443322 466666
Q ss_pred HHhCCCCC--CCCCCCHHHHHHHHHHHhC------CCcEEEEEeCCC
Q 043249 232 KRIGFSTD--SWQGKSFEERASDITNTLK------HKKFVLLSDDIW 270 (287)
Q Consensus 232 ~~~~~~~~--~~~~~~~~~l~~~l~~~l~------~kr~LlVLDDvw 270 (287)
.++..... .....+..+....|-..|+ +-+.+.|+|+..
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD 147 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD 147 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh
Confidence 66543211 1112233334445555554 235777777764
No 385
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.66 E-value=0.012 Score=47.99 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|+.|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 56789999999999999999997753
No 386
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.66 E-value=0.018 Score=51.32 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|....+.++.+.+..-.....-|-|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 357899888888888776533344567899999999999999998754
No 387
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.0078 Score=49.22 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|-+.|.+|+||||+|+.+..-.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 46678999999999999987765
No 388
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.65 E-value=0.024 Score=50.85 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=51.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTL 257 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 257 (287)
...|.|.|..|+||||+++.+.+.. ..+...+++. +.+. .+-.......-+.....+... ......++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp--~E~~~~~~~~~i~q~evg~~~---~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDP--IEYVHRNKRSLINQREVGLDT---LSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCC--hhhhccCccceEEccccCCCC---cCHHHHHHHhh
Confidence 4789999999999999999988754 3344445443 2221 111110000000000001111 23455678888
Q ss_pred CCCcEEEEEeCCCCccccc
Q 043249 258 KHKKFVLLSDDIWESEIDL 276 (287)
Q Consensus 258 ~~kr~LlVLDDvw~~~~~~ 276 (287)
+...=.|++|++.+ ...+
T Consensus 193 r~~pd~i~vgEird-~~~~ 210 (343)
T TIGR01420 193 REDPDVILIGEMRD-LETV 210 (343)
T ss_pred ccCCCEEEEeCCCC-HHHH
Confidence 88888999999987 5543
No 389
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.65 E-value=0.01 Score=49.20 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999764
No 390
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.65 E-value=0.01 Score=45.90 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+-|-++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357799999999999999997754
No 391
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.63 E-value=0.017 Score=53.37 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=52.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC----CCCCCCCH-----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFST----DSWQGKSF----- 246 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~----~~~~~~~~----- 246 (287)
+-..++|+|..|+|||||++.+.+.. . -+.....-+.+.. +..++..+.+..-.... -...+.+.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~-~----~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNT-S----ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc-C----CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 56789999999999999999887754 2 1232223333332 23333333222110000 00011111
Q ss_pred -HHHHHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 247 -EERASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 247 -~~l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
...+-.+.+++ +++..||++||+..-.....+|
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEi 267 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREI 267 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHH
Confidence 11223355665 4899999999997633344444
No 392
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.62 E-value=0.012 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=22.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|+|.+|+|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 393
>PRK08356 hypothetical protein; Provisional
Probab=95.61 E-value=0.011 Score=48.52 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.3
Q ss_pred ceEEEEEccCCCcHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQV 198 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v 198 (287)
..+|.|+|++|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999999
No 394
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.61 E-value=0.039 Score=53.73 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=31.2
Q ss_pred cccchHHHHHHHHH---HHhccC-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWR---CITEQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~---~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.|.+...+++.+ ++.... .-.+-+.++|++|+||||+|+.+.+..
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 35676655555444 333211 123348899999999999999998865
No 395
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.61 E-value=0.15 Score=43.88 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=35.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
.-.++.|.|.+|+||||++..+.... - ..+=..++|++... +...+.+.+..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~-~~~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-I-TQHGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-HhcCceEEEEEccc--CHHHHHHHHHH
Confidence 44688899999999999999886654 1 22224577877655 34555555544
No 396
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.61 E-value=0.0095 Score=51.73 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=20.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|+|-||+||||++-.+..-.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999998876554
No 397
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.026 Score=50.45 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHHHhcc----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQ----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.|.++.++-|.+...-+ -..++=|..+|++|.|||-||++|+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3556666665555543211 2357788899999999999999999976
No 398
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.61 E-value=0.045 Score=50.52 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=55.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHH----
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFSTD----SWQGKSFE---- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~~----~~~~~~~~---- 247 (287)
+-..++|+|..|+|||||++.+.... . -+..+.+.+.+.. ...++.+.+...-+.... ...+.+.-
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-Q----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 56788999999999999999997654 1 2334444455432 344444555443221100 00111111
Q ss_pred --HHHHHHHHHhC--CCcEEEEEeCCCCcccccccc
Q 043249 248 --ERASDITNTLK--HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 --~l~~~l~~~l~--~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+-.+.++++ ++..||++||+..-......|
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REi 272 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREI 272 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 12233555653 899999999997622334443
No 399
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.60 E-value=0.049 Score=50.72 Aligned_cols=94 Identities=23% Similarity=0.319 Sum_probs=52.9
Q ss_pred HHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCC
Q 043249 169 RCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKS 245 (287)
Q Consensus 169 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~ 245 (287)
+.|..+=..-.++.|.|.+|+|||||+..+.... . +.. ..++|++... +...+... +.+++..... ....+
T Consensus 85 ~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~-a-~~g-~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~ 158 (454)
T TIGR00416 85 RVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL-A-KNQ-MKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETN 158 (454)
T ss_pred HHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH-H-hcC-CcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCC
Confidence 3344333356899999999999999999986654 1 111 2466766543 34443322 2344432111 12234
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 246 FEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 246 ~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+.+...+.+ .+.=++|+|.+-.
T Consensus 159 ~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 159 WEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred HHHHHHHHHh---cCCcEEEEecchh
Confidence 4444444432 3556899998854
No 400
>PRK14532 adenylate kinase; Provisional
Probab=95.60 E-value=0.011 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.++|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999997754
No 401
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.59 E-value=0.013 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..|.|+|+.|+||||+++.+-...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999998765
No 402
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.59 E-value=0.012 Score=47.87 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999764
No 403
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.59 E-value=0.01 Score=50.59 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=20.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.++|++|+||||+|+.+....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998766
No 404
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.58 E-value=0.026 Score=46.32 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 165 DQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 165 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.+..+..+ +-++..|.|.+|+||||+++.+....
T Consensus 7 ~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 3444444444 44678889999999999999988766
No 405
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.58 E-value=0.012 Score=47.99 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998764
No 406
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.57 E-value=0.011 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-..++|+|+.|+|||||...+..
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999874
No 407
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.57 E-value=0.024 Score=46.80 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEE
Q 043249 159 GQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSV 216 (287)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~ 216 (287)
.+...-...++.|. +..++.+.|+.|+|||.||-...-+. -...+|+..+++.
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 34455566677776 34688999999999999999887665 3347888887774
No 408
>PLN02348 phosphoribulokinase
Probab=95.57 E-value=0.02 Score=51.69 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...-+|+|.|..|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 409
>PRK06761 hypothetical protein; Provisional
Probab=95.57 E-value=0.03 Score=48.56 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=22.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|.|.|.+|+||||+++.+....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 410
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.57 E-value=0.01 Score=51.41 Aligned_cols=24 Identities=38% Similarity=0.717 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|+|-||+||||++..+..-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999998876544
No 411
>PF13245 AAA_19: Part of AAA domain
Probab=95.56 E-value=0.035 Score=38.13 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=17.2
Q ss_pred ceEEEEEccCCCcHHH-HHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTT-LLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTt-La~~v~~~ 201 (287)
.++..|.|.+|.|||+ ++..+..-
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999994 44444443
No 412
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.54 E-value=0.013 Score=48.83 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 413
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.54 E-value=0.037 Score=44.66 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=29.8
Q ss_pred EEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQED 229 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~ 229 (287)
+.|.|.+|+|||+|+..+..... +.. ..++|++... +...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g-~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARG-EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCC-CcEEEEECCC--CHHHHHHH
Confidence 57899999999999998766541 222 3466777654 45555544
No 414
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.53 E-value=0.12 Score=47.51 Aligned_cols=90 Identities=19% Similarity=0.305 Sum_probs=52.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCCC----CCCCCCH--H--
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE-PNLMQIQEDIGKRIGFSTD----SWQGKSF--E-- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-~~~~~i~~~i~~~~~~~~~----~~~~~~~--~-- 247 (287)
.-..++|+|..|+|||||++.+.... + -+......+.+. ....++++..+..-+.... ...+.+. .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA-K----ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-C----CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 55688999999999999999998754 2 122222334443 4555666655554322100 0011111 1
Q ss_pred --HHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 248 --ERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 248 --~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
..+..+.++++ ++..||++||+..
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 12233445553 8999999999977
No 415
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.53 E-value=0.0099 Score=47.08 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
-|.|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998765
No 416
>PRK01184 hypothetical protein; Provisional
Probab=95.52 E-value=0.012 Score=47.72 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=17.0
Q ss_pred eEEEEEccCCCcHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQ 197 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~ 197 (287)
.+|.|+|++|+||||+++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4789999999999999973
No 417
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.52 E-value=0.013 Score=41.48 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998876
No 418
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.52 E-value=0.01 Score=47.14 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+..-|+|+|..|+|||||.+.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3455899999999999999999875
No 419
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.52 E-value=0.013 Score=51.50 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++.+||++.|-|||||||++-.+..-.
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 367999999999999999888865544
No 420
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.51 E-value=0.024 Score=52.78 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.+.+++..+ .+ +.+-++|..|+||||+|+.+.+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999888765 44 567789999999999999987754
No 421
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.51 E-value=0.029 Score=48.66 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=49.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEE-EEecC
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIW-SVVSR 219 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~w-v~vs~ 219 (287)
..++|.+..+.-+.+.+... ...+.-.+|++|.|||+-|....... --.+.|.|++- .++|.
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASD 98 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccc
Confidence 45789999999999988874 78889999999999999999888766 44566877654 24444
No 422
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.51 E-value=0.13 Score=48.75 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=56.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC-------------CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFST-------------DSWQG 243 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~-------------~~~~~ 243 (287)
.-.++.|.|.+|+|||+|+..+.... ...-+.++|++.... +..+.+.+ .+++..- .....
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 56788999999999999999987654 223457788877654 55555544 3444210 01112
Q ss_pred CCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 043249 244 KSFEERASDITNTLKH-KKFVLLSDDIWE 271 (287)
Q Consensus 244 ~~~~~l~~~l~~~l~~-kr~LlVLDDvw~ 271 (287)
.+.++....+.+.+.. +.-++|+|.+-.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 3445556666666543 445799999853
No 423
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.50 E-value=0.011 Score=47.69 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~ 200 (287)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 424
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.50 E-value=0.2 Score=48.18 Aligned_cols=112 Identities=12% Similarity=0.172 Sum_probs=73.9
Q ss_pred CcccchHHHHHHHHHHHhc---cCCCceEEEEEccCCCcHHHHHHHHHHHhcc--ccCCCCEEEEEEecC--CCCHHHHH
Q 043249 155 RTIVGQESILDQVWRCITE---QKKNNGIIGLYGMGGIGKTTLLKQVNNKFCS--EEHDFDVVIWSVVSR--EPNLMQIQ 227 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~--v~~~F~~~~wv~vs~--~~~~~~i~ 227 (287)
..+-+|+.+..+|-..+.. +....+.+-|-|.+|+|||..+..|.+.... .+..-....+|.+.. =..+.++.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 3467899999999888753 2223447889999999999999999885410 112222223344433 34588999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEeCCCC
Q 043249 228 EDIGKRIGFSTDSWQGKSFEERASDITNTLK-----HKKFVLLSDDIWE 271 (287)
Q Consensus 228 ~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~-----~kr~LlVLDDvw~ 271 (287)
..|...+.... .....-.+.|..++. .+.++|++|++..
T Consensus 476 ~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 476 EKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred HHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 99999988732 233344455666554 4579999998743
No 425
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.49 E-value=0.013 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998764
No 426
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.013 Score=48.62 Aligned_cols=24 Identities=33% Similarity=0.728 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
. .+++|+|..|.|||||++.+..-
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCC
Confidence 6 89999999999999999999764
No 427
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.48 E-value=0.011 Score=50.85 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=20.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|.|-||+||||++..+..-.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 578889999999999998876655
No 428
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.46 E-value=0.084 Score=45.51 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC--CCHHHHHHHHHHHhC
Q 043249 158 VGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE--PNLMQIQEDIGKRIG 235 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~i~~~~~ 235 (287)
.|......+.+..+... .-.++.|.|..|.||||+++.+.+.. .. ....+ +.+... +.... + .++.
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i---~~-~~~~i-itiEdp~E~~~~~----~-~q~~ 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSEL---NT-PEKNI-ITVEDPVEYQIPG----I-NQVQ 129 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhh---CC-CCCeE-EEECCCceecCCC----c-eEEE
Confidence 45444444444444433 35689999999999999999886643 11 11111 222221 11111 0 1111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCccc
Q 043249 236 FSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWESEI 274 (287)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~~~~ 274 (287)
... .... .....++..|+...=.|+++++.+ .+
T Consensus 130 v~~--~~~~---~~~~~l~~~lR~~PD~i~vgEiR~-~e 162 (264)
T cd01129 130 VNE--KAGL---TFARGLRAILRQDPDIIMVGEIRD-AE 162 (264)
T ss_pred eCC--cCCc---CHHHHHHHHhccCCCEEEeccCCC-HH
Confidence 100 0111 244557777787777888888888 44
No 429
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.015 Score=46.87 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999764
No 430
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.013 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 431
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.026 Score=52.99 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+...+.+.+++..+. -.+.+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887651 23456789999999999999987754
No 432
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.45 E-value=0.012 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998753
No 433
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.45 E-value=0.023 Score=50.66 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 157 IVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|....+.++.+.+..-.....-|-|+|..|+||+++|+.+++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 3677767777776665432344567899999999999999998865
No 434
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.024 Score=48.22 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=33.9
Q ss_pred CcccchHHHHHHHHHHHh----ccC-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT----EQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++=|-.+.++++-+... +++ ..++=|..+|++|.|||-+|++|.|..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 344466677776665432 221 345667899999999999999999965
No 435
>PLN02674 adenylate kinase
Probab=95.45 E-value=0.064 Score=45.57 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|.|++|+||||+|+.+..+.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999998765
No 436
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.44 E-value=0.021 Score=54.39 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=39.4
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|....+.++.+.+..-......|-|+|..|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 4568999999988888776433344566799999999999999999865
No 437
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.013 Score=48.47 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 438
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.44 E-value=0.014 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+.|+|+|..|+|||||++.+....
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999998764
No 439
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.017 Score=46.46 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++.|.|+.|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678899999999999999999863
No 440
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.43 E-value=0.015 Score=46.94 Aligned_cols=26 Identities=35% Similarity=0.623 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|.|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45799999999999999999997743
No 441
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.42 E-value=0.053 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|+|.|+.|+||||+++.+.+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998876
No 442
>PLN02165 adenylate isopentenyltransferase
Probab=95.42 E-value=0.017 Score=51.17 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|+.|+||||||..+....
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 55699999999999999999988764
No 443
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.42 E-value=0.015 Score=48.48 Aligned_cols=25 Identities=44% Similarity=0.682 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.014 Score=48.81 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999998653
No 445
>PRK14529 adenylate kinase; Provisional
Probab=95.40 E-value=0.081 Score=44.34 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|.|++|+||||+++.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7789999999999999998876
No 446
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.40 E-value=0.056 Score=50.23 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=61.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcccc---CCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHH-
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEE---HDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFE- 247 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~---~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~- 247 (287)
+-.-++|.|-.|+|||||+..+.+.. ... ..| .++++.+++..+ +.++++++...-.... ....+.+.-
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~ 219 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQA-KVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIE 219 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhh-hhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHH
Confidence 45677899999999999999988765 321 122 677888877544 4556666665421110 001112221
Q ss_pred -----HHHHHHHHHhC---CCcEEEEEeCCCCcccccccc
Q 043249 248 -----ERASDITNTLK---HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 248 -----~l~~~l~~~l~---~kr~LlVLDDvw~~~~~~~~i 279 (287)
..+..+.++++ +++.||++||+..-.....+|
T Consensus 220 R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REI 259 (460)
T PRK04196 220 RILTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREI 259 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHH
Confidence 12345677776 489999999997623344444
No 447
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.39 E-value=0.014 Score=48.47 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999764
No 448
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.39 E-value=0.016 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999999875
No 449
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.39 E-value=0.013 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|.++|.+|+|||||+..+.+.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998765
No 450
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.38 E-value=0.032 Score=50.44 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=38.9
Q ss_pred CCcccchHHHHHHHHHHHhccCCCc-eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNN-GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++|.+...+.+.+.+..+ .+ .-+-++|+.|+||||+|..+....
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999988876 44 458899999999999998876654
No 451
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.38 E-value=0.015 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4578999999999999999999764
No 452
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.37 E-value=0.033 Score=51.02 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=36.6
Q ss_pred CCcccchHHHHHHHHHHHh-------c---cC------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCIT-------E---QK------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~-------~---~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.++.++.+...+. . .. -....+.++|++|+|||+||+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 5668999998888865541 1 10 013578899999999999999998754
No 453
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.37 E-value=0.013 Score=50.81 Aligned_cols=23 Identities=43% Similarity=0.808 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|+|.|..|+|||||++.+..-.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998754
No 454
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.37 E-value=0.016 Score=48.64 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999864
No 455
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.37 E-value=0.017 Score=48.50 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4579999999999999999999764
No 456
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.026 Score=53.95 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|-+..++.+..++..+. -.+.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 458999999999999887652 34567899999999999999998765
No 457
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.35 E-value=0.016 Score=47.83 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||.+.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999764
No 458
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.35 E-value=0.026 Score=44.64 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.++|. -+++.++|..|+|||||...+....
T Consensus 25 g~~~l~~~l~-----~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLK-----GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHT-----TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhc-----CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3556666663 3789999999999999999998763
No 459
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.013 Score=48.52 Aligned_cols=22 Identities=41% Similarity=0.683 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+++|+|..|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999864
No 460
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.017 Score=56.06 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=34.4
Q ss_pred cccchHH---HHHHHHHHHhccC-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQES---ILDQVWRCITEQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++-|.++ ++++++++|.+++ .-++=+-++|++|+|||-||+++....
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 4567765 4555566666542 345667899999999999999998865
No 461
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.016 Score=49.00 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999754
No 462
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.34 E-value=0.16 Score=40.62 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=46.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCC-
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKH- 259 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~- 259 (287)
+.|.|..|+|||++|..+... .....+++..++.++.+ +.+.|..........+. ..+....|.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~---t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWR---TIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCce---EeecHHHHHHHHHhc
Confidence 678999999999999988553 22366777777777653 44444443222122222 11222334444421
Q ss_pred -CcEEEEEeCCCC
Q 043249 260 -KKFVLLSDDIWE 271 (287)
Q Consensus 260 -kr~LlVLDDvw~ 271 (287)
+.=.+++|.+-.
T Consensus 72 ~~~~~VLIDclt~ 84 (169)
T cd00544 72 DPGDVVLIDCLTL 84 (169)
T ss_pred CCCCEEEEEcHhH
Confidence 233799998743
No 463
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.33 E-value=0.017 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||.+.+..-
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999754
No 464
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.33 E-value=0.017 Score=47.98 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999764
No 465
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.017 Score=47.94 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 466
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.33 E-value=0.016 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..+|+++|..|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998664
No 467
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.33 E-value=0.02 Score=46.36 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.|.|.+|+||||+|+.+....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998765
No 468
>PLN02924 thymidylate kinase
Probab=95.33 E-value=0.066 Score=44.85 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=36.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
....|.|-|..|+||||+++.+.... +. ..+....+-..+......+..++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l-~~-~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFL-KG-LGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceeeeCCCCCChHHHHHHHHHh
Confidence 45689999999999999999999988 43 34554333222223334555566554
No 469
>PRK14531 adenylate kinase; Provisional
Probab=95.32 E-value=0.018 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|+|++|+||||+++.+....
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997765
No 470
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.32 E-value=0.015 Score=45.62 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999987643
No 471
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.32 E-value=0.015 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999997765
No 472
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.32 E-value=0.013 Score=45.40 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999775
No 473
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.023 Score=49.41 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-+..+.|||.+|.|||-||++|....
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 46789999999999999999999865
No 474
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.31 E-value=0.033 Score=49.20 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.++|+.|+||||+++.+....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999997754
No 475
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.31 E-value=0.017 Score=48.09 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||.+.+..-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999864
No 476
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.31 E-value=0.014 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|+|-||+||||++-.+-.-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 589999999999999988876544
No 477
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.31 E-value=0.07 Score=49.71 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=62.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCCC-----------CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFSTD-----------SWQGK 244 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~~-----------~~~~~ 244 (287)
+-.-++|+|-.|+|||||+..+.... . +.+=+.++++-+++... ..++..+++..-..... ...+.
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~-~-~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNI-A-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHH-H-HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 45678999999999999999877652 1 12227888888887644 45666666652111000 00111
Q ss_pred CHH------HHHHHHHHHhC--CC-cEEEEEeCCCCccccccccc
Q 043249 245 SFE------ERASDITNTLK--HK-KFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 245 ~~~------~l~~~l~~~l~--~k-r~LlVLDDvw~~~~~~~~i~ 280 (287)
+.- ..+..+.++++ ++ ..||++||+..-...+.+++
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIs 282 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVS 282 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHH
Confidence 211 22345778885 44 99999999976333455543
No 478
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.017 Score=48.92 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 479
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.30 E-value=0.017 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999754
No 480
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.30 E-value=0.016 Score=45.27 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|.++|.+|+|||||...+.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988764
No 481
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.30 E-value=0.014 Score=50.53 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|+|-||+||||++..+..-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 689999999999999998765544
No 482
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.30 E-value=0.038 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.-+|+|+|..|+|||||+..+....
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l 29 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRL 29 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 483
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.29 E-value=0.015 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.7
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|.|+|+.|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998753
No 484
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=95.29 E-value=0.065 Score=49.44 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=53.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCC----CCCCCCCHHH---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP-NLMQIQEDIGKRIGFST----DSWQGKSFEE--- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~i~~~~~~~~----~~~~~~~~~~--- 248 (287)
.-..++|+|..|+|||||++.+.+.. +-+.++...+.... ....+.+.++..-.... ....+.+...
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~~~-----~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~ 248 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMARYT-----QADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQ 248 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhCCC-----CCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHH
Confidence 56789999999999999999887643 22333333333322 33444444432211100 0111222211
Q ss_pred ---HHHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 249 ---RASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 249 ---l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
.+-.+.+++ +++..||++||+..-...+..+.
T Consensus 249 ~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEis 285 (455)
T PRK07960 249 GAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA 285 (455)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHH
Confidence 122345555 38999999999976334455543
No 485
>PRK13768 GTPase; Provisional
Probab=95.29 E-value=0.017 Score=49.42 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578899999999999998887655
No 486
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.018 Score=48.07 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 487
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.28 E-value=0.014 Score=45.80 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.++|.+|+|||||++.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997653
No 488
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.28 E-value=0.06 Score=46.26 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=29.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR 219 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 219 (287)
.-+++-|.|.+|+||||++..+.... - + .=+..++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A-S-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-h-CCCcEEEEEecC
Confidence 56899999999999999999875433 1 2 223567777654
No 489
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.27 E-value=0.018 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|-++|.+|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999987754
No 490
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.26 E-value=0.015 Score=48.65 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||.+.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999754
No 491
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.26 E-value=0.042 Score=48.58 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~ 199 (287)
.+++...|.|||||||+|-+..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A 23 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATA 23 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHH
Confidence 4788999999999999998843
No 492
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.26 E-value=0.18 Score=47.15 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=59.6
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccccCCCCE-EEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH-
Q 043249 177 NNGIIGLYGMGGIGKTTLL-KQVNNKFCSEEHDFDV-VIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~v~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~- 248 (287)
+-.-++|+|-.|+|||||| ..+.+.. .-+. ++++.+++... ..++.+.+...-.... ....+.+.-.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~-----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK-----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc-----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 4567799999999999996 5676643 3344 78888988644 4456666555322110 0001111111
Q ss_pred -----HHHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 249 -----RASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 249 -----l~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
.+..+.+++ +++..|||+||+..-...+..|.
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REis 274 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELS 274 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHH
Confidence 122355666 48999999999976334565553
No 493
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.26 E-value=0.029 Score=45.43 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+...|.|+|.+|+|||||...+.+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455699999999999999998763
No 494
>PRK02496 adk adenylate kinase; Provisional
Probab=95.26 E-value=0.018 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-+.|+|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997754
No 495
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.26 E-value=0.019 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999764
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.25 E-value=0.017 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||.+.+..-
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999764
No 497
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.25 E-value=0.019 Score=47.95 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|+|.|+.|+||||+++.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998755
No 498
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.24 E-value=0.22 Score=42.06 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=33.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIG 231 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~ 231 (287)
.-.++.|.|.+|+||||++..+.... - ..+=...+|++... +...+.+.++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~-~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-A-KKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-H-HhCCCceEEEeCCC--CHHHHHHHHH
Confidence 44688999999999999999876654 1 22123556666544 3555555554
No 499
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.24 E-value=0.068 Score=47.27 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 162 SILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.....++..|..+ +.|.|.|.+|+||||+++.+....
T Consensus 52 ~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 52 ATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred HHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHH
Confidence 3445566666543 458899999999999999998866
No 500
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.24 E-value=0.019 Score=47.99 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999998754
Done!