Query 043249
Match_columns 287
No_of_seqs 215 out of 1999
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 04:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.7E-22 5.9E-27 190.1 14.1 116 158-275 131-257 (549)
2 1vt4_I APAF-1 related killer D 99.8 3.6E-19 1.2E-23 173.8 8.4 122 155-279 128-262 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.8 1.4E-18 4.8E-23 177.1 10.0 125 154-279 123-254 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.7 9.1E-17 3.1E-21 152.3 10.4 123 154-279 123-254 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 4.8E-16 1.6E-20 115.5 12.0 82 10-98 2-84 (115)
6 1w5s_A Origin recognition comp 99.2 8.4E-11 2.9E-15 106.1 12.4 116 154-271 21-149 (412)
7 2qby_B CDC6 homolog 3, cell di 99.1 2.2E-10 7.5E-15 102.4 10.7 116 155-271 20-144 (384)
8 2v1u_A Cell division control p 99.1 9.2E-10 3.2E-14 98.1 13.1 116 154-271 18-141 (387)
9 1fnn_A CDC6P, cell division co 99.1 4.2E-09 1.4E-13 94.1 15.9 114 155-271 17-136 (389)
10 2qby_A CDC6 homolog 1, cell di 99.1 5.4E-10 1.8E-14 99.6 9.9 116 154-271 19-139 (386)
11 2qen_A Walker-type ATPase; unk 99.0 1.4E-09 4.8E-14 95.6 9.1 106 154-271 11-139 (350)
12 2fna_A Conserved hypothetical 98.8 2.8E-08 9.7E-13 87.4 11.2 105 154-271 12-148 (357)
13 3te6_A Regulatory protein SIR3 98.7 1.3E-07 4.5E-12 82.2 12.7 113 156-271 21-143 (318)
14 2chg_A Replication factor C sm 98.6 1.5E-07 5.1E-12 76.8 8.2 46 155-202 17-62 (226)
15 1jbk_A CLPB protein; beta barr 98.6 3E-07 1E-11 73.1 9.8 46 155-202 22-67 (195)
16 1njg_A DNA polymerase III subu 98.4 9.7E-07 3.3E-11 72.7 9.8 47 155-202 23-69 (250)
17 2p65_A Hypothetical protein PF 98.3 1.1E-06 3.9E-11 69.5 7.8 46 155-202 22-67 (187)
18 1sxj_B Activator 1 37 kDa subu 98.3 1.1E-06 3.7E-11 76.2 7.6 46 155-202 21-66 (323)
19 2w58_A DNAI, primosome compone 98.2 7.5E-06 2.6E-10 66.2 8.8 89 162-271 36-126 (202)
20 3h4m_A Proteasome-activating n 98.1 8.3E-06 2.9E-10 69.5 8.8 48 155-202 17-75 (285)
21 1iqp_A RFCS; clamp loader, ext 98.0 2.7E-06 9.4E-11 73.8 4.4 46 155-202 25-70 (327)
22 3pvs_A Replication-associated 98.0 2.3E-05 7.8E-10 71.5 9.7 46 155-202 26-74 (447)
23 2qz4_A Paraplegin; AAA+, SPG7, 98.0 3.6E-05 1.2E-09 64.5 10.2 48 155-202 6-63 (262)
24 3cf0_A Transitional endoplasmi 97.9 4.2E-05 1.4E-09 66.0 9.9 94 155-271 15-119 (301)
25 3b9p_A CG5977-PA, isoform A; A 97.9 4.5E-05 1.5E-09 65.4 9.9 48 155-202 21-78 (297)
26 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00013 4.5E-09 63.5 12.8 95 155-271 12-116 (322)
27 3ec2_A DNA replication protein 97.9 2.4E-05 8.2E-10 62.0 7.4 43 160-202 19-62 (180)
28 3syl_A Protein CBBX; photosynt 97.9 3.5E-05 1.2E-09 66.3 9.0 47 156-202 32-91 (309)
29 3eie_A Vacuolar protein sortin 97.9 3.7E-05 1.3E-09 66.9 8.3 48 155-202 18-75 (322)
30 1lv7_A FTSH; alpha/beta domain 97.9 9E-05 3.1E-09 62.1 10.4 93 155-270 12-114 (257)
31 3d8b_A Fidgetin-like protein 1 97.8 6.6E-05 2.3E-09 66.3 9.2 48 155-202 84-141 (357)
32 1sxj_A Activator 1 95 kDa subu 97.8 6.9E-05 2.4E-09 69.6 9.1 48 155-202 39-101 (516)
33 1hqc_A RUVB; extended AAA-ATPa 97.8 4.7E-05 1.6E-09 65.9 7.4 48 155-202 12-62 (324)
34 3pfi_A Holliday junction ATP-d 97.8 9.4E-05 3.2E-09 64.6 9.2 48 155-202 29-79 (338)
35 3uk6_A RUVB-like 2; hexameric 97.8 0.00012 3.9E-09 64.7 9.7 48 155-202 44-94 (368)
36 1qvr_A CLPB protein; coiled co 97.7 9.6E-05 3.3E-09 72.8 9.8 46 155-202 170-215 (854)
37 3vfd_A Spastin; ATPase, microt 97.7 0.00014 4.6E-09 65.1 9.9 48 155-202 115-172 (389)
38 2qp9_X Vacuolar protein sortin 97.7 0.00012 4E-09 64.7 9.0 48 155-202 51-108 (355)
39 3n70_A Transport activator; si 97.7 4E-05 1.4E-09 58.6 5.0 47 156-202 2-48 (145)
40 2z4s_A Chromosomal replication 97.7 0.00011 3.7E-09 66.9 8.5 44 158-202 109-154 (440)
41 3u61_B DNA polymerase accessor 97.7 0.00016 5.4E-09 62.8 9.2 47 155-202 26-72 (324)
42 3hu3_A Transitional endoplasmi 97.6 9.8E-05 3.4E-09 68.0 7.8 93 155-270 204-307 (489)
43 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00029 1E-08 68.4 11.2 46 155-202 186-231 (758)
44 1l8q_A Chromosomal replication 97.6 0.00026 8.9E-09 61.4 9.2 39 164-202 23-61 (324)
45 4b4t_K 26S protease regulatory 97.6 0.00045 1.5E-08 62.4 10.7 48 155-202 172-230 (428)
46 4b4t_L 26S protease subunit RP 97.6 0.00049 1.7E-08 62.2 10.9 48 155-202 181-239 (437)
47 2cvh_A DNA repair and recombin 97.6 0.00058 2E-08 55.4 10.6 88 177-271 19-116 (220)
48 4b4t_J 26S protease regulatory 97.6 0.00038 1.3E-08 62.1 10.0 48 155-202 148-206 (405)
49 1d2n_A N-ethylmaleimide-sensit 97.6 0.0006 2.1E-08 57.5 10.9 48 155-202 33-88 (272)
50 2ce7_A Cell division protein F 97.5 0.00045 1.5E-08 63.3 10.1 94 155-271 16-119 (476)
51 4fcw_A Chaperone protein CLPB; 97.5 0.0004 1.4E-08 59.6 9.4 48 155-202 17-71 (311)
52 2zan_A Vacuolar protein sortin 97.5 0.00031 1.1E-08 63.9 8.6 48 155-202 134-191 (444)
53 3pxg_A Negative regulator of g 97.5 0.00011 3.9E-09 67.3 5.5 46 155-202 180-225 (468)
54 2vhj_A Ntpase P4, P4; non- hyd 97.5 7.2E-05 2.5E-09 64.8 3.8 69 178-271 123-193 (331)
55 4b4t_M 26S protease regulatory 97.4 0.00044 1.5E-08 62.5 9.0 48 155-202 181-239 (434)
56 4b4t_H 26S protease regulatory 97.4 0.00065 2.2E-08 61.6 9.9 48 155-202 209-267 (467)
57 3bos_A Putative DNA replicatio 97.4 0.00027 9.3E-09 58.0 6.4 59 156-219 29-90 (242)
58 1n0w_A DNA repair protein RAD5 97.4 0.00094 3.2E-08 55.0 9.5 93 177-271 23-130 (243)
59 1sxj_D Activator 1 41 kDa subu 97.3 0.00015 5E-09 63.5 4.3 46 155-202 37-82 (353)
60 1v5w_A DMC1, meiotic recombina 97.3 0.0029 1E-07 55.4 12.7 93 177-271 121-230 (343)
61 3co5_A Putative two-component 97.3 5.9E-05 2E-09 57.5 1.4 48 155-202 4-51 (143)
62 4b4t_I 26S protease regulatory 97.3 0.00076 2.6E-08 60.6 8.6 48 155-202 182-240 (437)
63 3hr8_A Protein RECA; alpha and 97.3 0.0011 3.8E-08 58.3 9.3 87 177-271 60-150 (356)
64 2kjq_A DNAA-related protein; s 97.3 0.00023 7.9E-09 54.7 4.4 26 177-202 35-60 (149)
65 2qgz_A Helicase loader, putati 97.3 0.00057 2E-08 59.0 7.2 42 161-202 134-176 (308)
66 1jr3_A DNA polymerase III subu 97.2 0.00038 1.3E-08 61.3 6.0 47 155-202 16-62 (373)
67 2z43_A DNA repair and recombin 97.2 0.0013 4.6E-08 57.1 9.3 93 177-271 106-214 (324)
68 2chq_A Replication factor C sm 97.2 0.00021 7E-09 61.5 4.1 46 155-202 17-62 (319)
69 2bjv_A PSP operon transcriptio 97.2 0.00029 9.9E-09 59.3 4.6 47 156-202 7-53 (265)
70 1ofh_A ATP-dependent HSL prote 97.2 0.0003 1E-08 60.3 4.7 48 155-202 15-74 (310)
71 3c8u_A Fructokinase; YP_612366 97.2 0.00035 1.2E-08 56.6 4.9 40 163-202 7-46 (208)
72 1in4_A RUVB, holliday junction 97.2 0.00035 1.2E-08 61.1 5.1 47 156-202 26-75 (334)
73 1ypw_A Transitional endoplasmi 97.2 0.00041 1.4E-08 67.8 6.1 48 155-202 204-262 (806)
74 3t15_A Ribulose bisphosphate c 97.2 0.00074 2.5E-08 57.9 7.0 26 177-202 35-60 (293)
75 1xp8_A RECA protein, recombina 97.2 0.0021 7.3E-08 56.8 9.9 87 177-271 73-163 (366)
76 3pxi_A Negative regulator of g 97.1 0.0004 1.4E-08 67.5 5.5 46 155-202 180-225 (758)
77 1rz3_A Hypothetical protein rb 97.1 0.00073 2.5E-08 54.4 6.1 43 160-202 3-46 (201)
78 3cf2_A TER ATPase, transitiona 97.1 0.00099 3.4E-08 64.7 7.8 93 156-271 205-308 (806)
79 1u94_A RECA protein, recombina 97.1 0.0016 5.3E-08 57.5 8.4 87 177-271 62-152 (356)
80 1ojl_A Transcriptional regulat 97.1 0.00059 2E-08 58.8 5.4 48 155-202 2-49 (304)
81 1sxj_E Activator 1 40 kDa subu 97.1 0.00027 9.4E-09 61.9 3.3 45 155-201 14-59 (354)
82 2i1q_A DNA repair and recombin 97.1 0.0019 6.6E-08 55.9 8.5 93 177-271 97-215 (322)
83 2zr9_A Protein RECA, recombina 97.0 0.0028 9.5E-08 55.7 9.6 87 177-271 60-150 (349)
84 1sxj_C Activator 1 40 kDa subu 97.0 0.0006 2E-08 59.6 5.3 46 155-202 25-70 (340)
85 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0011 3.7E-08 61.1 7.0 48 155-202 31-88 (499)
86 2b8t_A Thymidine kinase; deoxy 97.0 0.00023 8E-09 58.5 2.0 89 177-271 11-100 (223)
87 2xxa_A Signal recognition part 97.0 0.0078 2.7E-07 54.4 12.0 26 177-202 99-124 (433)
88 3m6a_A ATP-dependent protease 96.9 0.0021 7.2E-08 59.9 8.2 48 155-202 81-132 (543)
89 2px0_A Flagellar biosynthesis 96.9 0.0057 1.9E-07 52.4 10.3 26 177-202 104-129 (296)
90 3hws_A ATP-dependent CLP prote 96.9 0.00093 3.2E-08 58.9 5.4 47 156-202 16-75 (363)
91 1odf_A YGR205W, hypothetical 3 96.9 0.0013 4.3E-08 56.4 6.0 28 175-202 28-55 (290)
92 3lw7_A Adenylate kinase relate 96.9 0.00049 1.7E-08 53.5 3.1 23 179-202 2-24 (179)
93 3e70_C DPA, signal recognition 96.9 0.0094 3.2E-07 51.8 11.4 26 177-202 128-153 (328)
94 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0032 1.1E-07 51.3 7.9 89 177-271 22-134 (235)
95 2r62_A Cell division protease 96.9 0.00062 2.1E-08 57.2 3.6 48 155-202 11-68 (268)
96 2c9o_A RUVB-like 1; hexameric 96.8 0.0016 5.5E-08 59.4 6.4 48 155-202 37-87 (456)
97 1zp6_A Hypothetical protein AT 96.8 0.00073 2.5E-08 53.6 3.6 25 177-201 8-32 (191)
98 1j8m_F SRP54, signal recogniti 96.8 0.01 3.5E-07 50.9 11.0 25 178-202 98-122 (297)
99 3io5_A Recombination and repai 96.8 0.0067 2.3E-07 52.3 9.7 86 180-271 30-122 (333)
100 2x8a_A Nuclear valosin-contain 96.8 0.0013 4.4E-08 55.8 5.2 47 155-202 10-68 (274)
101 2r44_A Uncharacterized protein 96.8 0.0009 3.1E-08 58.1 4.2 44 155-202 27-70 (331)
102 3ice_A Transcription terminati 96.7 0.0036 1.2E-07 55.5 7.6 109 166-280 163-281 (422)
103 3kb2_A SPBC2 prophage-derived 96.7 0.00092 3.1E-08 51.9 3.5 24 179-202 2-25 (173)
104 3vaa_A Shikimate kinase, SK; s 96.7 0.001 3.6E-08 53.3 3.9 26 177-202 24-49 (199)
105 3lda_A DNA repair protein RAD5 96.7 0.0069 2.4E-07 54.2 9.6 93 177-271 177-284 (400)
106 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0023 8E-08 56.1 6.2 45 158-202 2-48 (359)
107 1ixz_A ATP-dependent metallopr 96.7 0.0015 5.2E-08 54.4 4.9 48 155-202 16-73 (254)
108 1pzn_A RAD51, DNA repair and r 96.7 0.0052 1.8E-07 53.9 8.6 93 177-271 130-242 (349)
109 2hf9_A Probable hydrogenase ni 96.7 0.0023 7.9E-08 52.1 5.8 39 162-202 24-62 (226)
110 1kag_A SKI, shikimate kinase I 96.7 0.00085 2.9E-08 52.3 3.0 24 179-202 5-28 (173)
111 1kgd_A CASK, peripheral plasma 96.7 0.001 3.5E-08 52.5 3.4 25 178-202 5-29 (180)
112 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.0013 4.4E-08 60.7 4.5 44 155-202 22-65 (500)
113 1qhx_A CPT, protein (chloramph 96.7 0.0011 3.8E-08 51.9 3.6 25 178-202 3-27 (178)
114 1ly1_A Polynucleotide kinase; 96.7 0.0012 4.1E-08 51.7 3.7 22 179-200 3-24 (181)
115 3uie_A Adenylyl-sulfate kinase 96.7 0.0013 4.5E-08 52.8 3.9 26 177-202 24-49 (200)
116 2wsm_A Hydrogenase expression/ 96.6 0.0022 7.5E-08 52.0 5.3 43 158-202 12-54 (221)
117 3tr0_A Guanylate kinase, GMP k 96.6 0.0014 4.6E-08 52.6 3.8 25 178-202 7-31 (205)
118 1iy2_A ATP-dependent metallopr 96.6 0.0026 9E-08 53.8 5.8 47 155-202 40-97 (278)
119 2gno_A DNA polymerase III, gam 96.6 0.012 3.9E-07 50.7 9.8 73 159-235 1-75 (305)
120 3umf_A Adenylate kinase; rossm 96.6 0.0034 1.2E-07 51.3 6.1 27 176-202 27-53 (217)
121 3asz_A Uridine kinase; cytidin 96.6 0.0015 5.1E-08 52.8 3.8 26 177-202 5-30 (211)
122 1um8_A ATP-dependent CLP prote 96.6 0.0026 9E-08 56.3 5.7 48 155-202 21-96 (376)
123 2rhm_A Putative kinase; P-loop 96.6 0.0018 6.1E-08 51.3 4.1 26 177-202 4-29 (193)
124 3trf_A Shikimate kinase, SK; a 96.6 0.0015 5.2E-08 51.5 3.7 25 178-202 5-29 (185)
125 1knq_A Gluconate kinase; ALFA/ 96.6 0.0018 6E-08 50.7 3.9 26 177-202 7-32 (175)
126 3tlx_A Adenylate kinase 2; str 96.5 0.0034 1.2E-07 52.1 5.9 42 161-202 12-53 (243)
127 4eun_A Thermoresistant glucoki 96.5 0.0017 5.8E-08 52.1 3.9 26 177-202 28-53 (200)
128 1ye8_A Protein THEP1, hypothet 96.5 0.0015 5E-08 51.7 3.4 23 180-202 2-24 (178)
129 3t61_A Gluconokinase; PSI-biol 96.5 0.0015 5.1E-08 52.5 3.5 26 177-202 17-42 (202)
130 2j41_A Guanylate kinase; GMP, 96.5 0.0017 5.8E-08 52.1 3.9 26 177-202 5-30 (207)
131 1nks_A Adenylate kinase; therm 96.5 0.0017 5.7E-08 51.4 3.8 24 179-202 2-25 (194)
132 4gp7_A Metallophosphoesterase; 96.5 0.0012 4.2E-08 51.6 2.9 23 177-199 8-30 (171)
133 3kl4_A SRP54, signal recogniti 96.5 0.02 7E-07 51.6 11.2 26 177-202 96-121 (433)
134 3bh0_A DNAB-like replicative h 96.5 0.014 4.7E-07 50.4 9.8 90 177-271 67-192 (315)
135 1gvn_B Zeta; postsegregational 96.5 0.0033 1.1E-07 53.7 5.7 41 162-202 14-57 (287)
136 1vma_A Cell division protein F 96.5 0.015 5E-07 50.1 9.8 26 177-202 103-128 (306)
137 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.7E-08 51.5 3.6 22 179-200 3-24 (189)
138 3iij_A Coilin-interacting nucl 96.5 0.0017 5.9E-08 51.0 3.6 26 177-202 10-35 (180)
139 2jaq_A Deoxyguanosine kinase; 96.5 0.0018 6.1E-08 51.7 3.6 23 180-202 2-24 (205)
140 1g8p_A Magnesium-chelatase 38 96.5 0.0012 4.3E-08 57.5 2.9 46 155-202 24-69 (350)
141 1kht_A Adenylate kinase; phosp 96.5 0.0019 6.5E-08 51.0 3.8 24 179-202 4-27 (192)
142 1uf9_A TT1252 protein; P-loop, 96.5 0.0021 7E-08 51.4 4.0 24 177-200 7-30 (203)
143 3sr0_A Adenylate kinase; phosp 96.5 0.01 3.6E-07 47.9 8.1 23 180-202 2-24 (206)
144 3tau_A Guanylate kinase, GMP k 96.4 0.002 7E-08 52.1 3.8 26 177-202 7-32 (208)
145 3a00_A Guanylate kinase, GMP k 96.4 0.0015 5.3E-08 51.8 3.1 24 179-202 2-25 (186)
146 1tev_A UMP-CMP kinase; ploop, 96.4 0.0021 7.3E-08 50.8 3.9 25 178-202 3-27 (196)
147 2if2_A Dephospho-COA kinase; a 96.4 0.0018 6.2E-08 51.9 3.4 22 179-200 2-23 (204)
148 3dm5_A SRP54, signal recogniti 96.4 0.031 1.1E-06 50.5 11.8 26 177-202 99-124 (443)
149 2p5t_B PEZT; postsegregational 96.4 0.0027 9.4E-08 53.0 4.6 43 160-202 11-56 (253)
150 2c95_A Adenylate kinase 1; tra 96.4 0.0023 7.9E-08 50.8 4.0 26 177-202 8-33 (196)
151 1cke_A CK, MSSA, protein (cyti 96.4 0.002 6.8E-08 52.6 3.6 25 178-202 5-29 (227)
152 2ffh_A Protein (FFH); SRP54, s 96.4 0.014 4.6E-07 52.6 9.3 26 177-202 97-122 (425)
153 2qt1_A Nicotinamide riboside k 96.4 0.0021 7.1E-08 51.8 3.6 25 177-201 20-44 (207)
154 2bbw_A Adenylate kinase 4, AK4 96.4 0.0022 7.7E-08 53.2 3.9 26 177-202 26-51 (246)
155 3fwy_A Light-independent proto 96.4 0.0019 6.4E-08 56.0 3.5 26 177-202 47-72 (314)
156 2qor_A Guanylate kinase; phosp 96.4 0.002 6.8E-08 51.9 3.4 26 177-202 11-36 (204)
157 1y63_A LMAJ004144AAA protein; 96.4 0.0025 8.6E-08 50.4 3.9 25 177-201 9-33 (184)
158 3tqc_A Pantothenate kinase; bi 96.4 0.0046 1.6E-07 53.6 5.8 45 158-202 70-116 (321)
159 1lvg_A Guanylate kinase, GMP k 96.4 0.0018 6E-08 52.1 3.0 25 178-202 4-28 (198)
160 1via_A Shikimate kinase; struc 96.4 0.002 6.8E-08 50.4 3.2 24 179-202 5-28 (175)
161 1zuh_A Shikimate kinase; alpha 96.4 0.0024 8.1E-08 49.6 3.6 26 177-202 6-31 (168)
162 2yvu_A Probable adenylyl-sulfa 96.4 0.0028 9.7E-08 50.0 4.1 26 177-202 12-37 (186)
163 3aez_A Pantothenate kinase; tr 96.4 0.0024 8.3E-08 55.2 4.0 27 176-202 88-114 (312)
164 1sky_E F1-ATPase, F1-ATP synth 96.4 0.019 6.6E-07 52.1 10.0 91 179-271 152-256 (473)
165 1cr0_A DNA primase/helicase; R 96.3 0.025 8.5E-07 48.1 10.2 26 177-202 34-59 (296)
166 1ukz_A Uridylate kinase; trans 96.3 0.003 1E-07 50.6 4.2 26 177-202 14-39 (203)
167 2ck3_D ATP synthase subunit be 96.3 0.028 9.7E-07 51.0 10.8 110 167-279 143-272 (482)
168 1znw_A Guanylate kinase, GMP k 96.3 0.0025 8.7E-08 51.4 3.7 26 177-202 19-44 (207)
169 2ze6_A Isopentenyl transferase 96.3 0.0026 8.7E-08 53.3 3.8 24 179-202 2-25 (253)
170 2plr_A DTMP kinase, probable t 96.3 0.003 1E-07 50.7 4.0 25 178-202 4-28 (213)
171 1jjv_A Dephospho-COA kinase; P 96.3 0.0023 7.8E-08 51.5 3.3 22 179-200 3-24 (206)
172 1uj2_A Uridine-cytidine kinase 96.3 0.0028 9.4E-08 52.9 3.8 26 177-202 21-46 (252)
173 2iyv_A Shikimate kinase, SK; t 96.3 0.0022 7.6E-08 50.5 3.1 24 179-202 3-26 (184)
174 3cm0_A Adenylate kinase; ATP-b 96.3 0.003 1E-07 49.7 3.8 25 178-202 4-28 (186)
175 3p32_A Probable GTPase RV1496/ 96.3 0.0055 1.9E-07 53.9 5.8 39 164-202 65-103 (355)
176 2cdn_A Adenylate kinase; phosp 96.2 0.0035 1.2E-07 50.2 4.1 26 177-202 19-44 (201)
177 1z6g_A Guanylate kinase; struc 96.2 0.0025 8.6E-08 52.0 3.3 26 177-202 22-47 (218)
178 2bwj_A Adenylate kinase 5; pho 96.2 0.0031 1.1E-07 50.2 3.7 25 178-202 12-36 (199)
179 2jeo_A Uridine-cytidine kinase 96.2 0.0034 1.1E-07 52.1 4.0 26 177-202 24-49 (245)
180 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0034 1.1E-07 52.7 4.0 26 177-202 3-28 (260)
181 1qf9_A UMP/CMP kinase, protein 96.2 0.0034 1.2E-07 49.5 3.8 26 177-202 5-30 (194)
182 1g41_A Heat shock protein HSLU 96.2 0.0056 1.9E-07 55.4 5.5 48 155-202 15-74 (444)
183 1rj9_A FTSY, signal recognitio 96.2 0.0034 1.2E-07 54.1 3.9 26 177-202 101-126 (304)
184 1e6c_A Shikimate kinase; phosp 96.2 0.0029 1E-07 49.1 3.2 24 179-202 3-26 (173)
185 1htw_A HI0065; nucleotide-bind 96.2 0.004 1.4E-07 48.2 3.9 26 177-202 32-57 (158)
186 1nn5_A Similar to deoxythymidy 96.2 0.004 1.4E-07 50.2 4.0 33 177-211 8-40 (215)
187 4e22_A Cytidylate kinase; P-lo 96.1 0.0037 1.3E-07 52.2 3.9 25 177-201 26-50 (252)
188 1xjc_A MOBB protein homolog; s 96.1 0.0039 1.3E-07 48.8 3.7 26 177-202 3-28 (169)
189 1a5t_A Delta prime, HOLB; zinc 96.1 0.043 1.5E-06 47.6 10.9 41 161-202 8-48 (334)
190 2vli_A Antibiotic resistance p 96.1 0.0023 7.8E-08 50.2 2.5 26 177-202 4-29 (183)
191 4a74_A DNA repair and recombin 96.1 0.014 4.8E-07 47.3 7.3 57 177-235 24-84 (231)
192 2pbr_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 49.4 3.7 23 180-202 2-24 (195)
193 3ney_A 55 kDa erythrocyte memb 96.1 0.004 1.4E-07 50.0 3.8 26 177-202 18-43 (197)
194 2wwf_A Thymidilate kinase, put 96.1 0.0041 1.4E-07 50.0 3.9 33 177-211 9-41 (212)
195 1fx0_B ATP synthase beta chain 96.1 0.028 9.5E-07 51.3 9.6 93 177-271 164-277 (498)
196 2pt5_A Shikimate kinase, SK; a 96.1 0.004 1.4E-07 48.1 3.6 23 180-202 2-24 (168)
197 1aky_A Adenylate kinase; ATP:A 96.1 0.0042 1.4E-07 50.5 3.9 26 177-202 3-28 (220)
198 3pxi_A Negative regulator of g 96.1 0.0094 3.2E-07 57.8 6.9 48 155-202 491-545 (758)
199 2i3b_A HCR-ntpase, human cance 96.0 0.0034 1.2E-07 50.1 3.0 24 179-202 2-25 (189)
200 2grj_A Dephospho-COA kinase; T 96.0 0.0048 1.7E-07 49.3 3.9 26 177-202 11-36 (192)
201 1s96_A Guanylate kinase, GMP k 96.0 0.0044 1.5E-07 50.7 3.7 26 177-202 15-40 (219)
202 1zu4_A FTSY; GTPase, signal re 96.0 0.0098 3.4E-07 51.5 6.1 26 177-202 104-129 (320)
203 1gtv_A TMK, thymidylate kinase 96.0 0.0023 7.8E-08 51.6 1.9 24 179-202 1-24 (214)
204 1zd8_A GTP:AMP phosphotransfer 96.0 0.0045 1.5E-07 50.6 3.7 26 177-202 6-31 (227)
205 2pez_A Bifunctional 3'-phospho 96.0 0.005 1.7E-07 48.2 3.8 26 177-202 4-29 (179)
206 2onk_A Molybdate/tungstate ABC 96.0 0.0042 1.4E-07 51.6 3.5 24 177-201 24-47 (240)
207 1m7g_A Adenylylsulfate kinase; 96.0 0.0054 1.8E-07 49.6 4.1 26 177-202 24-49 (211)
208 3b9q_A Chloroplast SRP recepto 96.0 0.0048 1.7E-07 53.0 3.9 26 177-202 99-124 (302)
209 2v54_A DTMP kinase, thymidylat 95.9 0.0053 1.8E-07 49.0 3.8 25 178-202 4-28 (204)
210 1sq5_A Pantothenate kinase; P- 95.9 0.0052 1.8E-07 52.9 4.0 26 177-202 79-104 (308)
211 2ehv_A Hypothetical protein PH 95.9 0.0042 1.4E-07 51.2 3.3 24 177-200 29-52 (251)
212 1svm_A Large T antigen; AAA+ f 95.9 0.01 3.5E-07 52.6 5.9 39 164-202 155-193 (377)
213 1vht_A Dephospho-COA kinase; s 95.9 0.0057 1.9E-07 49.6 4.0 23 178-200 4-26 (218)
214 3cf2_A TER ATPase, transitiona 95.9 0.014 4.8E-07 56.7 7.3 94 155-271 477-581 (806)
215 1zak_A Adenylate kinase; ATP:A 95.9 0.005 1.7E-07 50.1 3.6 26 177-202 4-29 (222)
216 3tif_A Uncharacterized ABC tra 95.9 0.0047 1.6E-07 51.0 3.5 24 177-200 30-53 (235)
217 2j37_W Signal recognition part 95.9 0.093 3.2E-06 48.2 12.4 26 177-202 100-125 (504)
218 2f6r_A COA synthase, bifunctio 95.9 0.0051 1.7E-07 52.3 3.7 23 177-199 74-96 (281)
219 3k1j_A LON protease, ATP-depen 95.9 0.0072 2.4E-07 57.1 5.1 44 155-202 41-84 (604)
220 2pcj_A ABC transporter, lipopr 95.9 0.0043 1.5E-07 50.9 3.1 24 177-200 29-52 (224)
221 2f1r_A Molybdopterin-guanine d 95.9 0.0027 9.2E-08 49.9 1.8 24 179-202 3-26 (171)
222 3cmu_A Protein RECA, recombina 95.9 0.03 1E-06 59.3 9.9 86 177-270 1426-1515(2050)
223 3fb4_A Adenylate kinase; psych 95.9 0.0054 1.8E-07 49.6 3.6 23 180-202 2-24 (216)
224 2z0h_A DTMP kinase, thymidylat 95.9 0.0055 1.9E-07 48.6 3.6 23 180-202 2-24 (197)
225 2yhs_A FTSY, cell division pro 95.8 0.012 4E-07 54.0 6.0 26 177-202 292-317 (503)
226 1ex7_A Guanylate kinase; subst 95.8 0.0049 1.7E-07 49.1 3.0 24 179-202 2-25 (186)
227 3nwj_A ATSK2; P loop, shikimat 95.8 0.005 1.7E-07 51.4 3.2 25 178-202 48-72 (250)
228 2cbz_A Multidrug resistance-as 95.8 0.0056 1.9E-07 50.7 3.5 26 177-202 30-55 (237)
229 3dl0_A Adenylate kinase; phosp 95.8 0.006 2E-07 49.4 3.5 23 180-202 2-24 (216)
230 1b0u_A Histidine permease; ABC 95.8 0.0058 2E-07 51.4 3.5 25 177-201 31-55 (262)
231 3l0o_A Transcription terminati 95.8 0.029 1E-06 49.7 8.0 112 164-280 162-282 (427)
232 3lnc_A Guanylate kinase, GMP k 95.8 0.0039 1.3E-07 51.2 2.3 23 177-199 26-48 (231)
233 3fdi_A Uncharacterized protein 95.7 0.03 1E-06 44.9 7.5 25 178-202 6-30 (201)
234 3r20_A Cytidylate kinase; stru 95.7 0.0071 2.4E-07 49.9 3.7 26 177-202 8-33 (233)
235 2d2e_A SUFC protein; ABC-ATPas 95.7 0.0059 2E-07 51.0 3.3 25 177-201 28-52 (250)
236 3b85_A Phosphate starvation-in 95.7 0.0044 1.5E-07 50.3 2.4 24 178-201 22-45 (208)
237 2og2_A Putative signal recogni 95.7 0.0071 2.4E-07 53.3 3.9 26 177-202 156-181 (359)
238 3gfo_A Cobalt import ATP-bindi 95.7 0.0056 1.9E-07 51.9 3.1 24 177-200 33-56 (275)
239 4eaq_A DTMP kinase, thymidylat 95.7 0.018 6.1E-07 47.3 6.1 32 177-211 25-56 (229)
240 1ji0_A ABC transporter; ATP bi 95.7 0.0059 2E-07 50.6 3.1 25 177-201 31-55 (240)
241 1g6h_A High-affinity branched- 95.7 0.0058 2E-07 51.2 3.1 24 177-200 32-55 (257)
242 2pze_A Cystic fibrosis transme 95.7 0.006 2E-07 50.2 3.1 26 177-202 33-58 (229)
243 2olj_A Amino acid ABC transpor 95.7 0.0069 2.4E-07 51.0 3.5 25 177-201 49-73 (263)
244 1mv5_A LMRA, multidrug resista 95.6 0.0074 2.5E-07 50.1 3.6 24 177-200 27-50 (243)
245 2zu0_C Probable ATP-dependent 95.6 0.0075 2.6E-07 50.9 3.6 25 177-201 45-69 (267)
246 1oix_A RAS-related protein RAB 95.6 0.0073 2.5E-07 47.8 3.4 26 177-202 28-53 (191)
247 4g1u_C Hemin import ATP-bindin 95.6 0.0062 2.1E-07 51.4 3.1 24 177-200 36-59 (266)
248 1np6_A Molybdopterin-guanine d 95.6 0.0079 2.7E-07 47.3 3.5 26 177-202 5-30 (174)
249 3ake_A Cytidylate kinase; CMP 95.6 0.0079 2.7E-07 48.1 3.6 23 180-202 4-26 (208)
250 1sgw_A Putative ABC transporte 95.6 0.0055 1.9E-07 49.9 2.7 25 177-201 34-58 (214)
251 2ff7_A Alpha-hemolysin translo 95.6 0.0064 2.2E-07 50.6 3.1 25 177-201 34-58 (247)
252 2eyu_A Twitching motility prot 95.6 0.0092 3.2E-07 50.1 4.0 26 177-202 24-49 (261)
253 1tue_A Replication protein E1; 95.6 0.016 5.6E-07 46.7 5.2 40 162-202 43-82 (212)
254 2qm8_A GTPase/ATPase; G protei 95.6 0.016 5.4E-07 50.6 5.5 36 166-201 43-78 (337)
255 2ghi_A Transport protein; mult 95.6 0.0078 2.7E-07 50.5 3.5 25 177-201 45-69 (260)
256 2ixe_A Antigen peptide transpo 95.6 0.0078 2.7E-07 50.9 3.5 25 177-201 44-68 (271)
257 1vpl_A ABC transporter, ATP-bi 95.5 0.008 2.7E-07 50.4 3.5 25 177-201 40-64 (256)
258 2v9p_A Replication protein E1; 95.5 0.014 4.9E-07 50.1 5.1 25 177-201 125-149 (305)
259 3be4_A Adenylate kinase; malar 95.5 0.0087 3E-07 48.6 3.6 24 179-202 6-29 (217)
260 1ak2_A Adenylate kinase isoenz 95.5 0.01 3.6E-07 48.7 4.0 26 177-202 15-40 (233)
261 1e4v_A Adenylate kinase; trans 95.5 0.0091 3.1E-07 48.3 3.6 23 180-202 2-24 (214)
262 2f9l_A RAB11B, member RAS onco 95.5 0.0079 2.7E-07 47.8 3.2 24 178-201 5-28 (199)
263 1tq4_A IIGP1, interferon-induc 95.5 0.0095 3.3E-07 53.4 4.0 35 166-200 57-91 (413)
264 2qi9_C Vitamin B12 import ATP- 95.5 0.0075 2.6E-07 50.3 3.1 25 177-201 25-49 (249)
265 1yrb_A ATP(GTP)binding protein 95.5 0.0091 3.1E-07 49.7 3.7 26 177-202 13-38 (262)
266 2yz2_A Putative ABC transporte 95.5 0.0087 3E-07 50.4 3.5 25 177-201 32-56 (266)
267 2xb4_A Adenylate kinase; ATP-b 95.5 0.0095 3.2E-07 48.6 3.6 23 180-202 2-24 (223)
268 1r6b_X CLPA protein; AAA+, N-t 95.5 0.013 4.5E-07 56.8 5.2 49 154-202 457-512 (758)
269 2ged_A SR-beta, signal recogni 95.5 0.023 7.7E-07 44.7 5.8 26 177-202 47-72 (193)
270 2ihy_A ABC transporter, ATP-bi 95.4 0.0079 2.7E-07 51.1 3.1 25 177-201 46-70 (279)
271 2nq2_C Hypothetical ABC transp 95.4 0.008 2.7E-07 50.3 3.1 25 177-201 30-54 (253)
272 3d3q_A TRNA delta(2)-isopenten 95.4 0.01 3.5E-07 51.8 3.8 24 179-202 8-31 (340)
273 3bgw_A DNAB-like replicative h 95.4 0.15 5.1E-06 46.1 11.6 51 177-232 196-246 (444)
274 1q3t_A Cytidylate kinase; nucl 95.4 0.013 4.3E-07 48.2 4.1 27 176-202 14-40 (236)
275 3sop_A Neuronal-specific septi 95.4 0.0097 3.3E-07 50.3 3.4 23 180-202 4-26 (270)
276 2p67_A LAO/AO transport system 95.3 0.018 6.3E-07 50.2 5.2 36 167-202 45-80 (341)
277 4a1f_A DNAB helicase, replicat 95.3 0.086 2.9E-06 45.9 9.3 89 177-270 45-166 (338)
278 2zej_A Dardarin, leucine-rich 95.3 0.0089 3E-07 46.9 2.9 21 180-200 4-24 (184)
279 2wji_A Ferrous iron transport 95.3 0.011 3.7E-07 45.5 3.3 23 179-201 4-26 (165)
280 1ltq_A Polynucleotide kinase; 95.3 0.012 4E-07 50.2 3.7 23 179-201 3-25 (301)
281 1fzq_A ADP-ribosylation factor 95.3 0.015 5.2E-07 45.4 4.1 25 177-201 15-39 (181)
282 2ce2_X GTPase HRAS; signaling 95.3 0.011 3.8E-07 44.8 3.2 23 180-202 5-27 (166)
283 2dyk_A GTP-binding protein; GT 95.2 0.014 4.7E-07 44.2 3.7 23 179-201 2-24 (161)
284 3vr4_D V-type sodium ATPase su 95.2 0.018 6.1E-07 52.1 4.8 90 179-271 152-259 (465)
285 1ls1_A Signal recognition part 95.2 0.013 4.5E-07 50.1 3.8 26 177-202 97-122 (295)
286 3crm_A TRNA delta(2)-isopenten 95.2 0.013 4.3E-07 50.8 3.7 25 178-202 5-29 (323)
287 2vp4_A Deoxynucleoside kinase; 95.2 0.0082 2.8E-07 49.3 2.4 25 177-201 19-43 (230)
288 1z2a_A RAS-related protein RAB 95.2 0.012 4.1E-07 44.8 3.2 25 178-202 5-29 (168)
289 2pjz_A Hypothetical protein ST 95.2 0.011 3.7E-07 49.8 3.1 23 178-200 30-52 (263)
290 2q6t_A DNAB replication FORK h 95.2 0.24 8.1E-06 44.7 12.2 53 177-233 199-251 (444)
291 1nlf_A Regulatory protein REPA 95.1 0.012 4E-07 49.8 3.2 26 177-202 29-54 (279)
292 2bbs_A Cystic fibrosis transme 95.1 0.013 4.3E-07 50.1 3.5 25 177-201 63-87 (290)
293 3lv8_A DTMP kinase, thymidylat 95.1 0.041 1.4E-06 45.4 6.4 38 177-216 26-63 (236)
294 3a8t_A Adenylate isopentenyltr 95.1 0.013 4.5E-07 50.9 3.5 26 177-202 39-64 (339)
295 3t1o_A Gliding protein MGLA; G 95.1 0.012 4.1E-07 46.2 3.1 25 178-202 14-38 (198)
296 2wjg_A FEOB, ferrous iron tran 95.1 0.013 4.5E-07 45.8 3.3 24 178-201 7-30 (188)
297 3exa_A TRNA delta(2)-isopenten 95.1 0.015 5.2E-07 50.0 3.8 25 178-202 3-27 (322)
298 3cmu_A Protein RECA, recombina 95.1 0.08 2.7E-06 56.2 9.7 87 177-271 382-472 (2050)
299 3fvq_A Fe(3+) IONS import ATP- 95.1 0.014 4.9E-07 51.3 3.6 25 177-201 29-53 (359)
300 3con_A GTPase NRAS; structural 95.1 0.013 4.6E-07 45.9 3.2 24 179-202 22-45 (190)
301 3nh6_A ATP-binding cassette SU 95.0 0.0098 3.4E-07 51.2 2.5 24 177-200 79-102 (306)
302 3zvl_A Bifunctional polynucleo 95.0 0.013 4.5E-07 52.7 3.4 26 177-202 257-282 (416)
303 2v3c_C SRP54, signal recogniti 95.0 0.017 5.7E-07 52.2 4.1 26 177-202 98-123 (432)
304 1qvr_A CLPB protein; coiled co 95.0 0.025 8.5E-07 55.6 5.7 47 156-202 559-612 (854)
305 3end_A Light-independent proto 95.0 0.014 4.9E-07 49.9 3.5 27 176-202 39-65 (307)
306 2ocp_A DGK, deoxyguanosine kin 95.0 0.018 6E-07 47.5 4.0 25 178-202 2-26 (241)
307 1p9r_A General secretion pathw 95.0 0.028 9.6E-07 50.5 5.5 26 177-202 166-191 (418)
308 3kta_A Chromosome segregation 95.0 0.016 5.5E-07 45.3 3.5 22 179-200 27-48 (182)
309 1u8z_A RAS-related protein RAL 95.0 0.015 5.1E-07 44.2 3.2 24 179-202 5-28 (168)
310 1c1y_A RAS-related protein RAP 95.0 0.015 5.1E-07 44.2 3.2 22 180-201 5-26 (167)
311 1u0j_A DNA replication protein 95.0 0.032 1.1E-06 46.8 5.4 38 164-201 90-127 (267)
312 1z47_A CYSA, putative ABC-tran 95.0 0.014 4.7E-07 51.3 3.3 25 177-201 40-64 (355)
313 1a7j_A Phosphoribulokinase; tr 95.0 0.0076 2.6E-07 51.4 1.6 26 177-202 4-29 (290)
314 1zj6_A ADP-ribosylation factor 94.9 0.029 9.9E-07 43.9 4.9 35 164-201 5-39 (187)
315 3tui_C Methionine import ATP-b 94.9 0.016 5.6E-07 51.0 3.6 25 177-201 53-77 (366)
316 2nzj_A GTP-binding protein REM 94.9 0.013 4.4E-07 45.1 2.7 24 178-201 4-27 (175)
317 2yyz_A Sugar ABC transporter, 94.9 0.017 5.8E-07 50.8 3.7 25 177-201 28-52 (359)
318 3mfy_A V-type ATP synthase alp 94.9 0.056 1.9E-06 49.9 7.1 107 167-279 217-343 (588)
319 2gj8_A MNME, tRNA modification 94.9 0.014 4.9E-07 45.3 2.9 23 179-201 5-27 (172)
320 2it1_A 362AA long hypothetical 94.9 0.017 5.9E-07 50.8 3.6 25 177-201 28-52 (362)
321 2r6a_A DNAB helicase, replicat 94.9 0.18 6.3E-06 45.6 10.6 91 177-271 202-324 (454)
322 1z08_A RAS-related protein RAB 94.9 0.017 5.8E-07 44.2 3.2 24 178-201 6-29 (170)
323 1kao_A RAP2A; GTP-binding prot 94.8 0.017 5.8E-07 43.8 3.2 23 179-201 4-26 (167)
324 1r8s_A ADP-ribosylation factor 94.8 0.018 6.2E-07 43.7 3.3 22 181-202 3-24 (164)
325 2lkc_A Translation initiation 94.8 0.019 6.4E-07 44.3 3.5 25 177-201 7-31 (178)
326 3jvv_A Twitching mobility prot 94.8 0.028 9.7E-07 49.4 4.9 26 177-202 122-147 (356)
327 3f9v_A Minichromosome maintena 94.8 0.0078 2.7E-07 56.7 1.4 48 155-202 295-351 (595)
328 2erx_A GTP-binding protein DI- 94.8 0.015 5.2E-07 44.4 2.9 23 179-201 4-26 (172)
329 1g29_1 MALK, maltose transport 94.8 0.016 5.5E-07 51.3 3.3 25 177-201 28-52 (372)
330 1z0j_A RAB-22, RAS-related pro 94.8 0.018 6E-07 44.0 3.2 24 179-202 7-30 (170)
331 3def_A T7I23.11 protein; chlor 94.8 0.037 1.3E-06 46.2 5.4 39 164-202 22-60 (262)
332 3rlf_A Maltose/maltodextrin im 94.8 0.018 6.3E-07 51.0 3.6 25 177-201 28-52 (381)
333 3q72_A GTP-binding protein RAD 94.8 0.016 5.3E-07 44.2 2.9 21 180-200 4-24 (166)
334 3foz_A TRNA delta(2)-isopenten 94.8 0.024 8E-07 48.8 4.2 26 177-202 9-34 (316)
335 1ek0_A Protein (GTP-binding pr 94.8 0.018 6.1E-07 43.9 3.2 23 180-202 5-27 (170)
336 1m7b_A RND3/RHOE small GTP-bin 94.8 0.017 5.9E-07 45.1 3.2 25 177-201 6-30 (184)
337 1v43_A Sugar-binding transport 94.8 0.019 6.4E-07 50.8 3.6 25 177-201 36-60 (372)
338 1nij_A Hypothetical protein YJ 94.8 0.015 5E-07 50.3 2.9 25 177-201 3-27 (318)
339 1lw7_A Transcriptional regulat 94.8 0.016 5.6E-07 51.0 3.3 25 178-202 170-194 (365)
340 2www_A Methylmalonic aciduria 94.8 0.021 7.1E-07 50.1 3.9 25 177-201 73-97 (349)
341 3q85_A GTP-binding protein REM 94.8 0.016 5.5E-07 44.3 2.9 21 179-199 3-23 (169)
342 1nrj_B SR-beta, signal recogni 94.8 0.023 7.7E-07 45.7 3.8 26 177-202 11-36 (218)
343 2fn4_A P23, RAS-related protei 94.7 0.018 6.3E-07 44.4 3.2 25 177-201 8-32 (181)
344 1cp2_A CP2, nitrogenase iron p 94.7 0.018 6E-07 48.2 3.2 24 179-202 2-25 (269)
345 2dr3_A UPF0273 protein PH0284; 94.7 0.029 9.9E-07 45.9 4.5 89 177-271 22-139 (247)
346 1ky3_A GTP-binding protein YPT 94.7 0.019 6.5E-07 44.4 3.2 25 177-201 7-31 (182)
347 3ihw_A Centg3; RAS, centaurin, 94.7 0.019 6.5E-07 45.1 3.2 25 177-201 19-43 (184)
348 3cmw_A Protein RECA, recombina 94.7 0.078 2.7E-06 55.5 8.4 87 177-271 382-472 (1706)
349 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.019 6.6E-07 44.2 3.2 24 178-201 7-30 (177)
350 1r2q_A RAS-related protein RAB 94.7 0.02 6.7E-07 43.6 3.2 23 179-201 7-29 (170)
351 1svi_A GTP-binding protein YSX 94.7 0.021 7.3E-07 44.8 3.5 25 177-201 22-46 (195)
352 1q57_A DNA primase/helicase; d 94.7 0.31 1.1E-05 44.7 11.7 91 177-271 241-365 (503)
353 1moz_A ARL1, ADP-ribosylation 94.7 0.021 7.2E-07 44.3 3.4 24 177-200 17-40 (183)
354 1g16_A RAS-related protein SEC 94.7 0.02 6.9E-07 43.7 3.2 23 179-201 4-26 (170)
355 3d31_A Sulfate/molybdate ABC t 94.6 0.015 5.3E-07 50.9 2.7 25 177-201 25-49 (348)
356 2hxs_A RAB-26, RAS-related pro 94.6 0.02 6.8E-07 44.2 3.1 24 178-201 6-29 (178)
357 1z0f_A RAB14, member RAS oncog 94.6 0.021 7E-07 44.0 3.2 26 177-202 14-39 (179)
358 2qe7_A ATP synthase subunit al 94.6 0.16 5.6E-06 46.3 9.5 98 177-279 161-273 (502)
359 2qnr_A Septin-2, protein NEDD5 94.6 0.017 5.7E-07 49.6 2.8 21 181-201 21-41 (301)
360 4tmk_A Protein (thymidylate ki 94.6 0.073 2.5E-06 43.1 6.6 53 178-232 3-55 (213)
361 1h65_A Chloroplast outer envel 94.6 0.044 1.5E-06 45.9 5.4 39 164-202 25-63 (270)
362 1pui_A ENGB, probable GTP-bind 94.6 0.013 4.5E-07 46.8 2.0 24 177-200 25-48 (210)
363 2ewv_A Twitching motility prot 94.6 0.023 8E-07 50.2 3.8 26 177-202 135-160 (372)
364 4gzl_A RAS-related C3 botulinu 94.6 0.025 8.4E-07 45.2 3.7 25 177-201 29-53 (204)
365 1m2o_B GTP-binding protein SAR 94.6 0.021 7.2E-07 45.0 3.2 24 178-201 23-46 (190)
366 3kkq_A RAS-related protein M-R 94.6 0.022 7.4E-07 44.3 3.2 25 177-201 17-41 (183)
367 3c5c_A RAS-like protein 12; GD 94.6 0.022 7.4E-07 44.8 3.2 25 177-201 20-44 (187)
368 2h92_A Cytidylate kinase; ross 94.6 0.02 6.9E-07 46.2 3.1 25 178-202 3-27 (219)
369 3pqc_A Probable GTP-binding pr 94.6 0.024 8.2E-07 44.4 3.5 25 177-201 22-46 (195)
370 2obl_A ESCN; ATPase, hydrolase 94.5 0.021 7.3E-07 50.0 3.4 26 177-202 70-95 (347)
371 4dsu_A GTPase KRAS, isoform 2B 94.5 0.022 7.4E-07 44.4 3.2 24 179-202 5-28 (189)
372 1g8f_A Sulfate adenylyltransfe 94.5 0.036 1.2E-06 51.1 5.0 45 158-202 375-419 (511)
373 4edh_A DTMP kinase, thymidylat 94.5 0.085 2.9E-06 42.7 6.8 34 177-212 5-38 (213)
374 2bme_A RAB4A, RAS-related prot 94.5 0.021 7E-07 44.5 3.0 25 178-202 10-34 (186)
375 3upu_A ATP-dependent DNA helic 94.5 0.057 1.9E-06 49.1 6.3 40 160-202 30-69 (459)
376 2oil_A CATX-8, RAS-related pro 94.5 0.023 7.7E-07 44.7 3.2 26 177-202 24-49 (193)
377 3tw8_B RAS-related protein RAB 94.5 0.02 7E-07 44.1 2.9 25 177-201 8-32 (181)
378 2yv5_A YJEQ protein; hydrolase 94.5 0.034 1.2E-06 47.7 4.5 33 164-202 156-188 (302)
379 2cxx_A Probable GTP-binding pr 94.5 0.019 6.6E-07 44.8 2.7 22 180-201 3-24 (190)
380 1oxx_K GLCV, glucose, ABC tran 94.5 0.014 4.8E-07 51.3 2.0 25 177-201 30-54 (353)
381 2afh_E Nitrogenase iron protei 94.5 0.022 7.5E-07 48.2 3.2 24 179-202 3-26 (289)
382 3bc1_A RAS-related protein RAB 94.5 0.024 8.1E-07 44.3 3.2 24 178-201 11-34 (195)
383 3dz8_A RAS-related protein RAB 94.4 0.025 8.4E-07 44.5 3.3 26 177-202 22-47 (191)
384 3cbq_A GTP-binding protein REM 94.4 0.017 5.9E-07 45.8 2.4 23 177-199 22-44 (195)
385 3gd7_A Fusion complex of cysti 94.4 0.025 8.6E-07 50.3 3.6 24 177-200 46-69 (390)
386 2y8e_A RAB-protein 6, GH09086P 94.4 0.022 7.6E-07 43.8 3.0 23 179-201 15-37 (179)
387 3bwd_D RAC-like GTP-binding pr 94.4 0.025 8.5E-07 43.8 3.2 24 178-201 8-31 (182)
388 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.025 8.5E-07 43.9 3.2 23 179-201 6-28 (186)
389 3hjn_A DTMP kinase, thymidylat 94.4 0.14 4.6E-06 40.9 7.6 87 181-271 3-92 (197)
390 2a9k_A RAS-related protein RAL 94.4 0.025 8.5E-07 43.9 3.2 26 177-202 17-42 (187)
391 1f6b_A SAR1; gtpases, N-termin 94.4 0.02 6.9E-07 45.5 2.7 23 178-200 25-47 (198)
392 2efe_B Small GTP-binding prote 94.4 0.025 8.6E-07 43.7 3.2 24 178-201 12-35 (181)
393 3llu_A RAS-related GTP-binding 94.4 0.021 7.1E-07 45.2 2.7 25 177-201 19-43 (196)
394 3t5g_A GTP-binding protein RHE 94.4 0.025 8.7E-07 43.8 3.2 24 178-201 6-29 (181)
395 2cjw_A GTP-binding protein GEM 94.4 0.025 8.6E-07 44.7 3.2 23 178-200 6-28 (192)
396 2atv_A RERG, RAS-like estrogen 94.4 0.025 8.6E-07 44.6 3.2 25 177-201 27-51 (196)
397 3gqb_B V-type ATP synthase bet 94.3 0.043 1.5E-06 49.6 4.9 93 178-271 147-262 (464)
398 2bov_A RAla, RAS-related prote 94.3 0.023 7.9E-07 45.0 3.0 25 177-201 13-37 (206)
399 3oes_A GTPase rhebl1; small GT 94.3 0.026 8.7E-07 44.8 3.2 26 177-202 23-48 (201)
400 1upt_A ARL1, ADP-ribosylation 94.3 0.035 1.2E-06 42.4 3.9 24 178-201 7-30 (171)
401 2iwr_A Centaurin gamma 1; ANK 94.3 0.019 6.3E-07 44.5 2.3 23 179-201 8-30 (178)
402 1vg8_A RAS-related protein RAB 94.3 0.026 8.8E-07 44.8 3.2 26 177-202 7-32 (207)
403 2gza_A Type IV secretion syste 94.3 0.019 6.6E-07 50.5 2.6 26 177-202 174-199 (361)
404 2g6b_A RAS-related protein RAB 94.3 0.027 9.1E-07 43.5 3.2 25 178-202 10-34 (180)
405 3ld9_A DTMP kinase, thymidylat 94.3 0.058 2E-06 44.1 5.3 55 177-232 20-74 (223)
406 3cr8_A Sulfate adenylyltranfer 94.3 0.031 1.1E-06 52.0 4.1 26 177-202 368-393 (552)
407 1fx0_A ATP synthase alpha chai 94.3 0.08 2.7E-06 48.4 6.7 90 177-271 162-266 (507)
408 3vr4_A V-type sodium ATPase ca 94.3 0.082 2.8E-06 49.1 6.7 99 167-271 222-340 (600)
409 3gmt_A Adenylate kinase; ssgci 94.3 0.029 9.8E-07 46.1 3.4 26 177-202 7-32 (230)
410 2fg5_A RAB-22B, RAS-related pr 94.3 0.027 9.3E-07 44.3 3.2 25 178-202 23-47 (192)
411 1gwn_A RHO-related GTP-binding 94.3 0.027 9.2E-07 45.1 3.2 25 177-201 27-51 (205)
412 1ega_A Protein (GTP-binding pr 94.3 0.025 8.7E-07 48.4 3.2 25 177-201 7-31 (301)
413 3clv_A RAB5 protein, putative; 94.2 0.027 9.4E-07 44.2 3.2 25 177-201 6-30 (208)
414 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.023 7.8E-07 51.8 3.0 25 177-201 137-161 (460)
415 3oaa_A ATP synthase subunit al 94.2 0.15 5E-06 46.6 8.2 91 177-271 161-265 (513)
416 1u0l_A Probable GTPase ENGC; p 94.2 0.044 1.5E-06 46.9 4.6 33 164-201 160-192 (301)
417 2ew1_A RAS-related protein RAB 94.2 0.028 9.5E-07 44.9 3.2 25 177-201 25-49 (201)
418 2gf0_A GTP-binding protein DI- 94.2 0.028 9.6E-07 44.2 3.2 25 177-201 7-31 (199)
419 1zd9_A ADP-ribosylation factor 94.2 0.029 9.9E-07 44.0 3.2 25 178-202 22-46 (188)
420 3eph_A TRNA isopentenyltransfe 94.2 0.032 1.1E-06 49.7 3.7 24 179-202 3-26 (409)
421 3reg_A RHO-like small GTPase; 94.2 0.029 1E-06 44.1 3.2 26 177-202 22-47 (194)
422 3tkl_A RAS-related protein RAB 94.2 0.029 1E-06 44.0 3.2 26 177-202 15-40 (196)
423 2r9v_A ATP synthase subunit al 94.2 0.16 5.5E-06 46.4 8.3 98 177-279 174-286 (515)
424 2fh5_B SR-beta, signal recogni 94.1 0.029 1E-06 44.9 3.2 25 177-201 6-30 (214)
425 2ck3_A ATP synthase subunit al 94.1 0.18 6.2E-06 46.1 8.6 111 167-279 152-281 (510)
426 2a5j_A RAS-related protein RAB 94.1 0.031 1.1E-06 43.9 3.2 24 178-201 21-44 (191)
427 1p5z_B DCK, deoxycytidine kina 94.1 0.017 6E-07 48.2 1.8 26 177-202 23-48 (263)
428 1zbd_A Rabphilin-3A; G protein 94.1 0.027 9.4E-07 44.6 2.9 25 178-202 8-32 (203)
429 2gf9_A RAS-related protein RAB 94.1 0.032 1.1E-06 43.7 3.2 25 178-202 22-46 (189)
430 3k53_A Ferrous iron transport 94.0 0.033 1.1E-06 46.8 3.4 25 178-202 3-27 (271)
431 2p5s_A RAS and EF-hand domain 94.0 0.032 1.1E-06 44.2 3.2 25 177-201 27-51 (199)
432 1z06_A RAS-related protein RAB 94.0 0.033 1.1E-06 43.6 3.2 25 177-201 19-43 (189)
433 2orw_A Thymidine kinase; TMTK, 94.0 0.039 1.3E-06 43.6 3.6 24 179-202 4-27 (184)
434 1ypw_A Transitional endoplasmi 94.0 0.02 6.9E-07 55.9 2.3 48 155-202 477-535 (806)
435 1x3s_A RAS-related protein RAB 94.0 0.033 1.1E-06 43.6 3.2 24 179-202 16-39 (195)
436 2axn_A 6-phosphofructo-2-kinas 94.0 0.041 1.4E-06 50.9 4.2 26 177-202 34-59 (520)
437 2q3h_A RAS homolog gene family 94.0 0.028 9.5E-07 44.5 2.7 25 177-201 19-43 (201)
438 3lxx_A GTPase IMAP family memb 94.0 0.029 1E-06 46.0 2.9 26 177-202 28-53 (239)
439 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.021 7.1E-07 49.7 2.0 25 178-202 171-195 (330)
440 2bcg_Y Protein YP2, GTP-bindin 93.9 0.034 1.2E-06 44.2 3.2 25 178-202 8-32 (206)
441 1mky_A Probable GTP-binding pr 93.9 0.073 2.5E-06 48.1 5.7 45 158-202 151-204 (439)
442 2o52_A RAS-related protein RAB 93.9 0.028 9.7E-07 44.6 2.7 25 177-201 24-48 (200)
443 2fv8_A H6, RHO-related GTP-bin 93.9 0.035 1.2E-06 44.3 3.2 24 178-201 25-48 (207)
444 2dpy_A FLII, flagellum-specifi 93.9 0.034 1.2E-06 50.3 3.4 26 177-202 156-181 (438)
445 2qag_B Septin-6, protein NEDD5 93.9 0.025 8.5E-07 50.9 2.4 25 177-201 39-65 (427)
446 3hdt_A Putative kinase; struct 93.8 0.1 3.6E-06 42.5 6.0 26 177-202 13-38 (223)
447 2b6h_A ADP-ribosylation factor 93.8 0.033 1.1E-06 44.0 2.9 24 177-200 28-51 (192)
448 2atx_A Small GTP binding prote 93.8 0.038 1.3E-06 43.4 3.2 24 178-201 18-41 (194)
449 2h17_A ADP-ribosylation factor 93.8 0.031 1E-06 43.5 2.6 25 177-201 20-44 (181)
450 2j1l_A RHO-related GTP-binding 93.8 0.031 1E-06 45.0 2.7 25 177-201 33-57 (214)
451 2r8r_A Sensor protein; KDPD, P 93.8 0.039 1.3E-06 45.2 3.2 24 179-202 7-30 (228)
452 2rcn_A Probable GTPase ENGC; Y 93.8 0.036 1.2E-06 48.7 3.2 24 179-202 216-239 (358)
453 2hup_A RAS-related protein RAB 93.7 0.039 1.3E-06 43.9 3.2 25 177-201 28-52 (201)
454 2gco_A H9, RHO-related GTP-bin 93.7 0.039 1.3E-06 43.8 3.2 25 178-202 25-49 (201)
455 3cph_A RAS-related protein SEC 93.7 0.039 1.3E-06 43.9 3.2 25 177-201 19-43 (213)
456 1ksh_A ARF-like protein 2; sma 93.7 0.035 1.2E-06 43.2 2.9 25 177-201 17-41 (186)
457 2qu8_A Putative nucleolar GTP- 93.7 0.047 1.6E-06 44.3 3.7 26 177-202 28-53 (228)
458 1yqt_A RNAse L inhibitor; ATP- 93.7 0.035 1.2E-06 51.6 3.3 26 177-202 311-336 (538)
459 4bas_A ADP-ribosylation factor 93.7 0.041 1.4E-06 43.2 3.3 25 177-201 16-40 (199)
460 3euj_A Chromosome partition pr 93.7 0.042 1.4E-06 50.2 3.6 24 179-202 30-53 (483)
461 2g3y_A GTP-binding protein GEM 93.7 0.038 1.3E-06 44.7 3.0 24 177-200 36-59 (211)
462 2j0v_A RAC-like GTP-binding pr 93.7 0.04 1.4E-06 44.0 3.2 24 178-201 9-32 (212)
463 3q3j_B RHO-related GTP-binding 93.6 0.041 1.4E-06 44.3 3.2 24 178-201 27-50 (214)
464 1bif_A 6-phosphofructo-2-kinas 93.6 0.048 1.6E-06 49.7 4.0 26 177-202 38-63 (469)
465 2fu5_C RAS-related protein RAB 93.6 0.022 7.7E-07 44.2 1.5 24 178-201 8-31 (183)
466 3ch4_B Pmkase, phosphomevalona 93.6 0.062 2.1E-06 43.1 4.1 26 177-202 10-35 (202)
467 3iev_A GTP-binding protein ERA 93.6 0.038 1.3E-06 47.5 3.0 25 177-201 9-33 (308)
468 2il1_A RAB12; G-protein, GDP, 93.6 0.038 1.3E-06 43.5 2.9 24 178-201 26-49 (192)
469 1yqt_A RNAse L inhibitor; ATP- 93.6 0.039 1.3E-06 51.3 3.3 25 177-201 46-70 (538)
470 3gqb_A V-type ATP synthase alp 93.6 0.079 2.7E-06 48.9 5.2 40 177-221 220-259 (578)
471 2c61_A A-type ATP synthase non 93.5 0.058 2E-06 48.9 4.2 102 177-279 151-268 (469)
472 4dzz_A Plasmid partitioning pr 93.5 0.039 1.3E-06 43.8 2.8 24 179-202 2-26 (206)
473 3ozx_A RNAse L inhibitor; ATP 93.5 0.046 1.6E-06 50.8 3.6 25 177-201 24-48 (538)
474 3ozx_A RNAse L inhibitor; ATP 93.5 0.034 1.2E-06 51.6 2.8 26 177-202 293-318 (538)
475 3ea0_A ATPase, para family; al 93.5 0.05 1.7E-06 44.5 3.5 26 177-202 3-29 (245)
476 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.061 2.1E-06 40.9 3.7 23 178-200 23-45 (149)
477 2x77_A ADP-ribosylation factor 93.4 0.069 2.4E-06 41.6 4.1 24 177-200 21-44 (189)
478 4dkx_A RAS-related protein RAB 93.4 0.045 1.5E-06 44.4 3.0 22 180-201 15-36 (216)
479 3bk7_A ABC transporter ATP-bin 93.3 0.045 1.5E-06 51.6 3.3 93 177-271 381-500 (607)
480 3k9g_A PF-32 protein; ssgcid, 93.3 0.045 1.5E-06 45.6 3.0 26 177-202 26-52 (267)
481 2h57_A ADP-ribosylation factor 93.3 0.037 1.3E-06 43.4 2.3 26 177-202 20-45 (190)
482 1jwy_B Dynamin A GTPase domain 93.3 0.049 1.7E-06 46.6 3.3 26 176-201 22-47 (315)
483 2qag_C Septin-7; cell cycle, c 93.3 0.035 1.2E-06 49.9 2.4 22 181-202 34-55 (418)
484 2f7s_A C25KG, RAS-related prot 93.3 0.042 1.4E-06 44.0 2.7 25 177-201 24-48 (217)
485 2qmh_A HPR kinase/phosphorylas 93.2 0.045 1.5E-06 43.9 2.7 26 177-202 33-58 (205)
486 3cmw_A Protein RECA, recombina 93.2 0.22 7.6E-06 52.2 8.4 87 177-271 1430-1520(1706)
487 2xtp_A GTPase IMAP family memb 93.2 0.057 2E-06 44.8 3.5 25 177-201 21-45 (260)
488 3b60_A Lipid A export ATP-bind 93.2 0.052 1.8E-06 50.9 3.5 25 177-201 368-392 (582)
489 3j16_B RLI1P; ribosome recycli 93.2 0.049 1.7E-06 51.3 3.3 91 179-271 379-496 (608)
490 1wf3_A GTP-binding protein; GT 93.1 0.054 1.8E-06 46.4 3.3 25 177-201 6-30 (301)
491 3j16_B RLI1P; ribosome recycli 93.1 0.051 1.8E-06 51.2 3.3 25 177-201 102-126 (608)
492 2qtf_A Protein HFLX, GTP-bindi 93.1 0.05 1.7E-06 47.9 3.0 26 177-202 178-203 (364)
493 3iby_A Ferrous iron transport 93.1 0.053 1.8E-06 45.2 3.0 23 179-201 2-24 (256)
494 3b5x_A Lipid A export ATP-bind 93.0 0.056 1.9E-06 50.7 3.5 25 177-201 368-392 (582)
495 4hlc_A DTMP kinase, thymidylat 93.0 0.11 3.9E-06 41.7 4.9 24 179-202 3-26 (205)
496 3b1v_A Ferrous iron uptake tra 93.0 0.06 2E-06 45.4 3.4 24 178-201 3-26 (272)
497 2gks_A Bifunctional SAT/APS ki 93.0 0.11 3.7E-06 48.4 5.3 26 177-202 371-396 (546)
498 3llm_A ATP-dependent RNA helic 93.0 0.22 7.7E-06 40.5 6.8 103 164-271 66-187 (235)
499 3cpj_B GTP-binding protein YPT 93.0 0.059 2E-06 43.5 3.2 24 178-201 13-36 (223)
500 1m8p_A Sulfate adenylyltransfe 93.0 0.073 2.5E-06 49.8 4.2 26 177-202 395-420 (573)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.88 E-value=1.7e-22 Score=190.15 Aligned_cols=116 Identities=20% Similarity=0.196 Sum_probs=100.0
Q ss_pred cchHHHHHHHHHHHhcc-CCCceEEEEEccCCCcHHHHHHHHHH--HhccccCCCCEEEEEEecCCC--CHHHHHHHHHH
Q 043249 158 VGQESILDQVWRCITEQ-KKNNGIIGLYGMGGIGKTTLLKQVNN--KFCSEEHDFDVVIWSVVSREP--NLMQIQEDIGK 232 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~i~~ 232 (287)
+||+.++++|.++|..+ +...++|+|+||||+||||||+.+|+ +. +++.+|++++||++++.+ +...+++.|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 55 788999999999999985 89999999999
Q ss_pred HhCCCCC-----CCCCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCcccc
Q 043249 233 RIGFSTD-----SWQGKSFEERASDITNTLKHK-KFVLLSDDIWESEID 275 (287)
Q Consensus 233 ~~~~~~~-----~~~~~~~~~l~~~l~~~l~~k-r~LlVLDDvw~~~~~ 275 (287)
+++.... .....+...+...|++.|+++ ||||||||||+ ..+
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~ 257 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EET 257 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHH
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chh
Confidence 9986421 122345677889999999996 99999999999 654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.77 E-value=3.6e-19 Score=173.75 Aligned_cols=122 Identities=11% Similarity=0.104 Sum_probs=97.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCE-EEEEEecCCCCHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDV-VIWSVVSREPNLMQIQEDIGKR 233 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~-~~wv~vs~~~~~~~i~~~i~~~ 233 (287)
+..|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++. ++..+|++ ++|+++++.++...++..|+..
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 335999999999999998632 57999999999999999999999987 77889997 9999999999998988888875
Q ss_pred hCCCC----CCCC-----CCCHHHHHHHHHHHh---CCCcEEEEEeCCCCcccccccc
Q 043249 234 IGFST----DSWQ-----GKSFEERASDITNTL---KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 234 ~~~~~----~~~~-----~~~~~~l~~~l~~~l---~~kr~LlVLDDvw~~~~~~~~i 279 (287)
++... .... ..+.+.+...|++.| .+|||||||||||+ ...|+.+
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f 262 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAF 262 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhh
Confidence 43210 0000 013345667778766 68999999999999 8888765
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.75 E-value=1.4e-18 Score=177.06 Aligned_cols=125 Identities=18% Similarity=0.336 Sum_probs=99.8
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCC-CEEEEEEecCCCC--HHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF-DVVIWSVVSREPN--LMQIQEDI 230 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~~--~~~i~~~i 230 (287)
.+.+|||+.++++|.++|...+...++|+|+||||+||||||+.+|++......+| +.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45689999999999999986656889999999999999999999999752235555 5678999998644 34457778
Q ss_pred HHHhCCCCC--CCCCCCHHHHHHHHHHHhCCC--cEEEEEeCCCCcccccccc
Q 043249 231 GKRIGFSTD--SWQGKSFEERASDITNTLKHK--KFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 231 ~~~~~~~~~--~~~~~~~~~l~~~l~~~l~~k--r~LlVLDDvw~~~~~~~~i 279 (287)
+..+..... .....+.+.+...|+..|.++ ||||||||||+ ..+|+.+
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~ 254 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF 254 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh
Confidence 877765321 123457788999999999977 99999999999 8888765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.68 E-value=9.1e-17 Score=152.32 Aligned_cols=123 Identities=19% Similarity=0.319 Sum_probs=94.0
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccc-cCCC-CEEEEEEecCCCCHHHHHHHH-
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSE-EHDF-DVVIWSVVSREPNLMQIQEDI- 230 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v-~~~F-~~~~wv~vs~~~~~~~i~~~i- 230 (287)
.+.+|||+.+++.|.++|.......++|+|+||||+||||||+.+|++. .+ ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 4568999999999999998654468999999999999999999999876 54 6789 58999999876 444444444
Q ss_pred --HHHhCCC--CCCCCCCCHHHHHHHHHHHhCC--CcEEEEEeCCCCcccccccc
Q 043249 231 --GKRIGFS--TDSWQGKSFEERASDITNTLKH--KKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 231 --~~~~~~~--~~~~~~~~~~~l~~~l~~~l~~--kr~LlVLDDvw~~~~~~~~i 279 (287)
+..++.. .......+.+.+...|+..+.+ +++||||||||+ ...|..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~~l 254 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLKAF 254 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHHTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHHHh
Confidence 3445421 1122345677888888888876 799999999999 7666544
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.68 E-value=4.8e-16 Score=115.53 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=73.1
Q ss_pred ccccc-chhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 043249 10 SADTI-RPILFYVGGEAKYIWGLKGNLDDLQTETENLIAKKLDLLNKVRLAEQQPRNRRTPTVELWFRRVEEIETKVETL 88 (287)
Q Consensus 10 ~~~~v-~~l~~~l~~~~~~~~~~~~~~~~L~~~L~~l~~~l~d~~~~~~~ae~~~~~~~~~~~~~Wl~~lr~~a~d~eD~ 88 (287)
+++.+ +||++++.+|+.++.+++++++.|+++|++|+++|.| |+.+.....+++++.|+.+||+++||+||+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667 9999999999999999999999999999999999999 776621146899999999999999999999
Q ss_pred HHhhHHHhhh
Q 043249 89 QQERDQEIDR 98 (287)
Q Consensus 89 ld~~~~~~~~ 98 (287)
+|+|.++...
T Consensus 75 iD~f~~~~~~ 84 (115)
T 3qfl_A 75 VDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999998754
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=8.4e-11 Score=106.05 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=85.7
Q ss_pred CCcccchHHHHHHHHHHH-hcc--C--CCceEEEE--EccCCCcHHHHHHHHHHHhcccc---CCCC-EEEEEEecCCCC
Q 043249 154 DRTIVGQESILDQVWRCI-TEQ--K--KNNGIIGL--YGMGGIGKTTLLKQVNNKFCSEE---HDFD-VVIWSVVSREPN 222 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~v~---~~F~-~~~wv~vs~~~~ 222 (287)
+..++||+.+++.+.++| ..- . .....+.| +|++|+|||||++.+++.. ... ..|. ..+|+......+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCC
Confidence 367899999999999988 421 1 24456666 9999999999999999876 221 1233 356777767778
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 223 LMQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 223 ~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
...++..|+.+++.... ....+...+...+.+.+. +++++|||||++.
T Consensus 100 ~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQ-VRGAPALDILKALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHHHHTCCCC-CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 99999999999876321 123355666777777775 7899999999987
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.13 E-value=2.2e-10 Score=102.37 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=86.6
Q ss_pred CcccchHHHHHHHHHHHhc--cCCCceEEEEEccCCCcHHHHHHHHHHHhcccc----CC--CCEEEEEEecCCC-CHHH
Q 043249 155 RTIVGQESILDQVWRCITE--QKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE----HD--FDVVIWSVVSREP-NLMQ 225 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~--F~~~~wv~vs~~~-~~~~ 225 (287)
..++||+.+++.+.++|.. .....+.+.|+|++|+||||||+.+++.. ... .. ....+|+..+... +...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI-EEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH-HHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 6789999999999988864 23356789999999999999999999865 211 11 3356788877766 8889
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 226 IQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 226 i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
++..++..+..........+...+...+.+.+..++.+|||||++.
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~ 144 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDT 144 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHH
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHH
Confidence 9999998883222222334456677788888887777999999976
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.09 E-value=9.2e-10 Score=98.14 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=88.2
Q ss_pred CCcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhcccc----CCCCEEEEEEecCCCCHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE----HDFDVVIWSVVSREPNLMQIQ 227 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~ 227 (287)
++.++||+..++.+..+|..- ......+.|+|++|+||||||+.+++.. ... ..--..+|+..+...+...++
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL-EARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH-HHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 367899999999999988542 3356788999999999999999999865 211 101246778877888889999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 228 EDIGKRIGFSTDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 228 ~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
..++.+++... .....+...+...+.+.+. +++.+|+|||+..
T Consensus 97 ~~l~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~ 141 (387)
T 2v1u_A 97 SAIAEAVGVRV-PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF 141 (387)
T ss_dssp HHHHHHHSCCC-CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred HHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh
Confidence 99999997632 2234456677777777774 5689999999976
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.06 E-value=4.2e-09 Score=94.05 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=85.3
Q ss_pred CcccchHHHHHHHHHHHhcc--CCCc--eEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCITEQ--KKNN--GIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDI 230 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--~~~~--~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i 230 (287)
+.++||+.+++.+.+++... .... +.+.|+|++|+|||||++.+.+.. ..... -..+|+..+...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 57899999999999988752 1133 389999999999999999999876 22112 246777777777888999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 231 GKRIGFSTDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
+..++... .....+...+...+...+. +++.+|+|||+..
T Consensus 95 ~~~l~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 136 (389)
T 1fnn_A 95 ARSLNIPF-PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN 136 (389)
T ss_dssp HHHTTCCC-CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGG
T ss_pred HHHhCccC-CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccc
Confidence 99887532 1223456666667776665 6789999999976
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.05 E-value=5.4e-10 Score=99.57 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=85.5
Q ss_pred CCcccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccCC-CCEEEEEEecCCCCHHHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHD-FDVVIWSVVSREPNLMQIQEDI 230 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~-F~~~~wv~vs~~~~~~~i~~~i 230 (287)
+..++||+.+++.+.+++... ......+.|+|++|+|||||++.+++.. ..... --..+|+..+...+...++..+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 467899999999999988742 3356788999999999999999999865 21110 2256777777767788888898
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 231 GKRIGFSTDSWQGKSFEERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
+..++.... ....+...+...+.+.+. +++.+|||||++.
T Consensus 98 ~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 98 LESLDVKVP-FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp TTTTSCCCC-SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHH
T ss_pred HHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhh
Confidence 888765321 123456666666776665 4589999999976
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.97 E-value=1.4e-09 Score=95.59 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC------CHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP------NLMQIQ 227 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~------~~~~i~ 227 (287)
...++||+.+++.|.+++..+ +++.|+|++|+|||||++.+.+.. . .+|+.+.... +...++
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHH
Confidence 356899999999999988753 689999999999999999998864 1 5677665432 566677
Q ss_pred HHHHHHhCCC----------------CCCCCCCCHHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 043249 228 EDIGKRIGFS----------------TDSWQGKSFEERASDITNTLKH-KKFVLLSDDIWE 271 (287)
Q Consensus 228 ~~i~~~~~~~----------------~~~~~~~~~~~l~~~l~~~l~~-kr~LlVLDDvw~ 271 (287)
+.+...+... .......+..++...+.+.... ++++|||||++.
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~ 139 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQY 139 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGG
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHH
Confidence 7776655320 0001123556666667666653 399999999976
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.80 E-value=2.8e-08 Score=87.36 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCC-----CCHHHHHH
Q 043249 154 DRTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSRE-----PNLMQIQE 228 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-----~~~~~i~~ 228 (287)
...++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.. . . ..+|+..... .+...++.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHH
Confidence 3568999999999998 643 699999999999999999999875 2 2 2578877642 34455555
Q ss_pred HHHHHhC--------------C------CCC--CC-----CCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 229 DIGKRIG--------------F------STD--SW-----QGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 229 ~i~~~~~--------------~------~~~--~~-----~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+.+.+. . +.. .. .......+...+.+.-. ++++|||||+..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~ 148 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQE 148 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGG
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHH
Confidence 5444331 0 000 00 12345555555554322 499999999966
No 13
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.3e-07 Score=82.23 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=77.1
Q ss_pred cccchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHhccccC------CCCEEEEEEecCCCCHHHHH
Q 043249 156 TIVGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH------DFDVVIWSVVSREPNLMQIQ 227 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~------~F~~~~wv~vs~~~~~~~i~ 227 (287)
.+.||+++.+.|...|... ....+.+-|+|++|+|||++++.|.+.. .... .| ..+.+......+...+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L-~~~~~~~~~~~~-~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL-ITSSARKELPIF-DYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH-HHTTTTTSSCCE-EEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhhhccCCce-EEEEEeccccCCHHHHH
Confidence 3789999999999888653 3467788999999999999999999887 3221 12 24455555667888999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHH--hCCCcEEEEEeCCCC
Q 043249 228 EDIGKRIGFSTDSWQGKSFEERASDITNT--LKHKKFVLLSDDIWE 271 (287)
Q Consensus 228 ~~i~~~~~~~~~~~~~~~~~~l~~~l~~~--l~~kr~LlVLDDvw~ 271 (287)
..|++++..... ........+...+... -.+++++++||++..
T Consensus 99 ~~I~~~L~g~~~-~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 99 EKIWFAISKENL-CGDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHHHhcCCCC-CchHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 999999965321 1122334343333332 246789999999976
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.57 E-value=1.5e-07 Score=76.78 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+.+++... ....+.|+|.+|+||||||+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999766 44448999999999999999998864
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.57 E-value=3e-07 Score=73.10 Aligned_cols=46 Identities=15% Similarity=0.402 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|+++.++.+.+.+... ....+.|+|.+|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999998765 55667899999999999999998875
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.44 E-value=9.7e-07 Score=72.73 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+..++..+. ..+.+.|+|++|+||||||+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999987652 33578999999999999999998876
No 17
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.34 E-value=1.1e-06 Score=69.50 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+.+.+... ....+.|+|.+|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999998765 45667899999999999999998865
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=1.1e-06 Score=76.24 Aligned_cols=46 Identities=28% Similarity=0.436 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45899999999999998766 44448899999999999999998874
No 19
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.16 E-value=7.5e-06 Score=66.16 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCC--CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 043249 162 SILDQVWRCITEQKK--NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTD 239 (287)
Q Consensus 162 ~~~~~l~~~L~~~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~ 239 (287)
..++.+.+++..... ....+.|+|.+|+||||||+.+++.. . ......++++++ .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 345555566554321 12678899999999999999999976 2 233345565543 455555443221
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 240 SWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 240 ~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+.......+. + .-+|||||++.
T Consensus 104 ----~~~~~~~~~~~----~-~~~lilDei~~ 126 (202)
T 2w58_A 104 ----QTMNEKLDYIK----K-VPVLMLDDLGA 126 (202)
T ss_dssp ----CCCHHHHHHHH----H-SSEEEEEEECC
T ss_pred ----chHHHHHHHhc----C-CCEEEEcCCCC
Confidence 11222322232 2 23999999965
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=8.3e-06 Score=69.53 Aligned_cols=48 Identities=29% Similarity=0.323 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+.+... -....-+.|+|++|+||||||+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999998877431 1245668899999999999999998865
No 21
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=2.7e-06 Score=73.76 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=40.0
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+.+++..+ ....+.++|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45899999999999988876 55558999999999999999999874
No 22
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.00 E-value=2.3e-05 Score=71.47 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=38.8
Q ss_pred CcccchHHHH---HHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESIL---DQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..+ ..+...+..+ ....+.++|.+|+||||||+.+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4579998887 6777777766 56788999999999999999999865
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.99 E-value=3.6e-05 Score=64.53 Aligned_cols=48 Identities=25% Similarity=0.233 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHHHHHh---ccC-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT---EQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.+.+++. ..+ ...+-+.|+|++|+||||+|+.+.+..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467999887777765542 221 234567899999999999999999865
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.94 E-value=4.2e-05 Score=65.96 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=58.9
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCH
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNL 223 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~ 223 (287)
.+++|.+..++.|.+++... -...+.+.|+|++|+||||||+.+.+.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 46899998888887776431 1345678999999999999999999865 222 23332 2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 224 MQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 224 ~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
..+.... .+. .. ..+...+.........+|+||++..
T Consensus 83 ~~l~~~~---~g~-----~~---~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 83 PELLTMW---FGE-----SE---ANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHHH---HTT-----CT---THHHHHHHHHHHTCSEEEEECSTTH
T ss_pred HHHHhhh---cCc-----hH---HHHHHHHHHHHhcCCeEEEEEChHH
Confidence 2333222 222 11 1222333444446789999999964
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.93 E-value=4.5e-05 Score=65.39 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhcc----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.+.+.+... ....+.+.|+|++|+||||||+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999988877431 1235678899999999999999998865
No 26
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.92 E-value=0.00013 Score=63.53 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=57.8
Q ss_pred CcccchHHHHHHHHHHHhc----c------CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH
Q 043249 155 RTIVGQESILDQVWRCITE----Q------KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM 224 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 224 (287)
.+++|.+..++.|.+.+.. . ....+-+-++|++|+|||+||+.+.+.. . .. .++.++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~-----~~~~i~~~---- 80 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSS---- 80 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC-----EEEEEECC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC-----cEEEEEhH----
Confidence 5688999888888776632 1 1234678899999999999999999864 1 11 23333322
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 225 QIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 225 ~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+.. .+.......+...+...-..+..+|+||++..
T Consensus 81 --------~l~~---~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 81 --------DLVS---KWLGESEKLVKNLFQLARENKPSIIFIDEIDS 116 (322)
T ss_dssp --------SSCC---SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTG
T ss_pred --------HHHh---hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHH
Confidence 0000 11122333333333333346788999999975
No 27
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.92 E-value=2.4e-05 Score=61.98 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhccC-CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 160 QESILDQVWRCITEQK-KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 160 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.....+.+.+++.+-. .....+.|+|++|+|||||++.+.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555555554321 235788999999999999999999876
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.92 E-value=3.5e-05 Score=66.33 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHHhcc-------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQ-------------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.+..++.+.+++... ......+-|+|.+|+|||+||+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789998888887665421 2345578899999999999999887765
No 29
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.87 E-value=3.7e-05 Score=66.92 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhc----------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+.+.. .....+-+-++|++|+|||+||+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999887731 11234568899999999999999999865
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.87 E-value=9e-05 Score=62.14 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=54.9
Q ss_pred CcccchHHHHHHHHHHH---hccC-------CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH
Q 043249 155 RTIVGQESILDQVWRCI---TEQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM 224 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 224 (287)
.+++|.+..++.+.+.+ .... ...+-+.|+|.+|+||||||+.+.+.. ...| +.++.. +
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~-----~~i~~~-~-- 80 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF-----FTISGS-D-- 80 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE-----EEECSC-S--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE-----EEEeHH-H--
Confidence 46889887777665543 2210 123457899999999999999999875 2222 333321 0
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCC
Q 043249 225 QIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIW 270 (287)
Q Consensus 225 ~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw 270 (287)
+.. .........+...+.........++++|++.
T Consensus 81 ---------~~~---~~~~~~~~~~~~~~~~a~~~~~~il~iDeid 114 (257)
T 1lv7_A 81 ---------FVE---MFVGVGASRVRDMFEQAKKAAPCIIFIDEID 114 (257)
T ss_dssp ---------STT---SCCCCCHHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred ---------HHH---HhhhhhHHHHHHHHHHHHHcCCeeehhhhhh
Confidence 000 0111233334444455555667899999983
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.82 E-value=6.6e-05 Score=66.34 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHHhc----------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+.+.. .....+.+.|+|.+|+|||+||+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999998887742 11245678899999999999999998865
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=6.9e-05 Score=69.58 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHHhccC---------------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQK---------------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|++..++.+.++|.... ...+.+-|+|++|+||||+|+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999987510 134688999999999999999998865
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.77 E-value=4.7e-05 Score=65.94 Aligned_cols=48 Identities=25% Similarity=0.422 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhc---cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE---QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|++..++.+..++.. .......+.|+|++|+||||||+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999998888887753 12244677899999999999999999865
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.77 E-value=9.4e-05 Score=64.56 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+..++... ......+-|+|++|+|||+||+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45899999999988888642 2355678899999999999999998764
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.75 E-value=0.00012 Score=64.71 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=37.0
Q ss_pred CcccchHHHHHH---HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQ---VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++. +.+.+..+....+.+-|+|++|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988665 455555543234688999999999999999999876
No 36
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.74 E-value=9.6e-05 Score=72.81 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|++..++.+++.|... ....+.++|.+|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999765 34456799999999999999998865
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.73 E-value=0.00014 Score=65.07 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHHhcc----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+++... ....+-+-|+|.+|+|||+||+.+.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46899999999998887321 1234678899999999999999998764
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.71 E-value=0.00012 Score=64.70 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHHhcc----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+.+... ....+-|-++|++|+|||+||+.+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999888876321 1223457899999999999999999976
No 39
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.69 E-value=4e-05 Score=58.61 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.+..+.++.+.+..-.....-|-|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999998888775422233456799999999999999999864
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.68 E-value=0.00011 Score=66.87 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=30.4
Q ss_pred cchHH--HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 158 VGQES--ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 158 vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|..+ ....+......+.. ...+.|+|.+|+||||||+.+.+..
T Consensus 109 ~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 109 VGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 36443 23334443433322 6788999999999999999999865
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.68 E-value=0.00016 Score=62.79 Aligned_cols=47 Identities=19% Similarity=0.051 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|.+..++.+.+++..+. ...++-+.|++|+||||+|+.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 468999999999999888552 34677888999999999999998865
No 42
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.65 E-value=9.8e-05 Score=68.01 Aligned_cols=93 Identities=23% Similarity=0.245 Sum_probs=58.3
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCH
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNL 223 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~ 223 (287)
..++|.+..++.|.+++... -....-+-|+|.+|+|||+||+.+.+.. ...| +.++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~f-----v~vn~---- 271 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF-----FLING---- 271 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEE-----EEEEH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCE-----EEEEc----
Confidence 35789999999888876532 2345568899999999999999998864 2222 23221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCC
Q 043249 224 MQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIW 270 (287)
Q Consensus 224 ~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw 270 (287)
.. +...+ .......+...+.....++..+|+||++.
T Consensus 272 ~~----l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 272 PE----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp HH----HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred hH----hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 11 11111 11122333444555555778899999983
No 43
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.63 E-value=0.00029 Score=68.43 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+++.|... ...-+.++|.+|+||||+|+.+.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999998765 44556799999999999999998765
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.58 E-value=0.00026 Score=61.44 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+..++..+......+.|+|++|+||||||+.+.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344444444443245678899999999999999999876
No 45
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00045 Score=62.36 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHHhc----c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.++.++.|.+.+.- . -...+=+-++|++|+|||+||+++.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899888888776532 1 1345568899999999999999999976
No 46
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00049 Score=62.21 Aligned_cols=48 Identities=29% Similarity=0.291 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHHhc----c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.++.++.|.+.+.- + -..++=|-++|++|+|||+||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567888888877766532 1 1345678899999999999999999976
No 47
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.56 E-value=0.00058 Score=55.37 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=55.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC----------CCCCCCCCH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFS----------TDSWQGKSF 246 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~----------~~~~~~~~~ 246 (287)
.-.++.|+|.+|+|||||+..+.. . . -..++|++....++...+.+ ++..++.. .........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 457999999999999999999977 3 1 13677888776666665543 33332220 000111122
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 247 EERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 247 ~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.++...++..+..+.-+||||.+-.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 3344555555544577999999876
No 48
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00038 Score=62.13 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=36.7
Q ss_pred CcccchHHHHHHHHHHHhc----c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++.|.++.+++|.+.+.- + -..++=+-++|++|+|||+||+++.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4567898888877765532 1 1245667899999999999999999976
No 49
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.55 E-value=0.0006 Score=57.55 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=34.6
Q ss_pred CcccchHHHHHHHHH-------HHhcc-CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWR-------CITEQ-KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.....+.++. .+... ......+-|+|.+|+|||+||+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 346777666666555 33221 3356788899999999999999999865
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.51 E-value=0.00045 Score=63.30 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=55.6
Q ss_pred CcccchHHHHHHHHHHHh---cc-------CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH
Q 043249 155 RTIVGQESILDQVWRCIT---EQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM 224 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 224 (287)
.+++|.++.++++.+.+. .. -.-.+-+.|+|++|+||||||+.+.+.. ...| +.++.+.-..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~-- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVE-- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHH--
Confidence 457898887766665542 21 0123347799999999999999999865 2222 2233222110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 225 QIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 225 ~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.+.......+...+.....+...+|+||++..
T Consensus 88 ---------------~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 88 ---------------LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp ---------------CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred ---------------HHhcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 00111122233344555557789999999954
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.51 E-value=0.0004 Score=59.61 Aligned_cols=48 Identities=27% Similarity=0.447 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+...+... ......+.++|.+|+||||+|+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 35789998888888777643 1224589999999999999999999865
No 52
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.48 E-value=0.00031 Score=63.91 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHHhc----------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+.+..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999888887631 11234678899999999999999999864
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.46 E-value=0.00011 Score=67.27 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|++..++.+++.|... ...-+-++|.+|+|||++|+.+....
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999765 34456799999999999999998864
No 54
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.46 E-value=7.2e-05 Score=64.76 Aligned_cols=69 Identities=19% Similarity=0.348 Sum_probs=45.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEe--cCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVV--SREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITN 255 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~v--s~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 255 (287)
.+++-|+|++|+||||||..+.... .. .++|+++ +.. +.. ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHH
Confidence 4567899999999999999987642 11 2345555 222 111 01355666666777
Q ss_pred HhCCCcEEEEEeCCCC
Q 043249 256 TLKHKKFVLLSDDIWE 271 (287)
Q Consensus 256 ~l~~kr~LlVLDDvw~ 271 (287)
.+...+ +||+|++-.
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 776656 999999976
No 55
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00044 Score=62.46 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHHh----cc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT----EQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.++.++.|.+.+. .+ -..++=|-++|++|+|||+||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 457799988888877643 21 1346678899999999999999999976
No 56
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00065 Score=61.60 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHHh----cc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT----EQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.++.+++|.+.+. .. -..++=|-++|++|+|||+||+++.+..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 357789988888877543 11 1356778899999999999999999976
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.38 E-value=0.00027 Score=57.99 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=39.4
Q ss_pred cccch---HHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecC
Q 043249 156 TIVGQ---ESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSR 219 (287)
Q Consensus 156 ~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 219 (287)
+++|. +..++.+..++... ....+.|+|++|+||||||+.+.+.. .. ......|+..+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~-~~--~~~~~~~~~~~~ 90 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARA-NE--LERRSFYIPLGI 90 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEEGGG
T ss_pred hccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEEHHH
Confidence 45652 35555565555544 56778899999999999999999876 22 223456666543
No 58
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=0.00094 Score=55.01 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=57.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCC----CC---CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH----DFDVVIWSVVSREPNLMQIQEDIGKRIGFST----DS---WQGKS 245 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~----~~---~~~~~ 245 (287)
.-.++.|+|.+|+|||||++.+.... -... .-...+|+.....++...+. .++.+++... +. ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 45799999999999999999998753 1111 13568888877766655543 3445554321 00 01123
Q ss_pred HHHH---HHHHHHHhC-CCcEEEEEeCCCC
Q 043249 246 FEER---ASDITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 246 ~~~l---~~~l~~~l~-~kr~LlVLDDvw~ 271 (287)
..+. ...+...+. .+.-+||||++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 3332 333555554 5778999999876
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00015 Score=63.53 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|++..++.+..++..+ ....+.++|++|+||||+|+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999988766 33448899999999999999998764
No 60
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.0029 Score=55.40 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=59.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCC----------CCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH----DFDVVIWSVVSREPNLMQIQEDIGKRIGFST----------DSWQ 242 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~----------~~~~ 242 (287)
.-.++.|+|.+|+||||||..+.... .... .-..++|++....++...+.+ ++..++... ...+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 56799999999999999999987753 1111 224688999888888777654 445554421 0111
Q ss_pred CCCHHHHHHHHHHHhC---CCcEEEEEeCCCC
Q 043249 243 GKSFEERASDITNTLK---HKKFVLLSDDIWE 271 (287)
Q Consensus 243 ~~~~~~l~~~l~~~l~---~kr~LlVLDDvw~ 271 (287)
.....++...+...+. .+--+||+|.+-.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 2222234444555554 4667999999865
No 61
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.31 E-value=5.9e-05 Score=57.52 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++++.+.+..-.....-|-|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357899888888888775421133446799999999999999998754
No 62
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00076 Score=60.57 Aligned_cols=48 Identities=33% Similarity=0.365 Sum_probs=36.7
Q ss_pred CcccchHHHHHHHHHHHhc----c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++-|.++.++.|.+.+.- . -...+=|-++|++|+|||.||+++.+..
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 3466888888877765532 1 1345678899999999999999999976
No 63
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.27 E-value=0.0011 Score=58.33 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=57.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~l 253 (287)
.-.++.|+|.+|+|||||+..+.... .. .=..++|++....++.. .+++++..... ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-QK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 45799999999999999999998765 21 11246788777766654 45556543211 1234556666666
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
...++ .+.-++|+|.+-.
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 66554 4566899999865
No 64
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.27 E-value=0.00023 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....+.|+|..|+|||||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999976
No 65
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.26 E-value=0.00057 Score=59.04 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhccCC-CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 161 ESILDQVWRCITEQKK-NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 161 ~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....+.+.+++..... ....+-|+|.+|+|||+||+.+.+..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555566654321 24678899999999999999999976
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.24 E-value=0.00038 Score=61.32 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=39.6
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|++..++.+.+.+..+. ..+.+.|+|++|+||||+|+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999887652 23567899999999999999998865
No 67
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.0013 Score=57.10 Aligned_cols=93 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC----C---CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH----DFDVVIWSVVSREPNLMQIQEDIGKRIGFSTD----S---WQGKS 245 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~----~---~~~~~ 245 (287)
.-.++.|+|.+|+||||||..+.... .... .-..++|++....++...+.+ ++..++.... . ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCC
Confidence 45789999999999999999987653 1110 024788999888888777654 4555554210 0 01123
Q ss_pred HH---HHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 246 FE---ERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 246 ~~---~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
.+ ++...+...++ .+.-+||+|.+-.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 33 34445555554 4677999999865
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.22 E-value=0.00021 Score=61.51 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|++..++.+.+++..+ ....+-++|++|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 35799999999998888765 44448899999999999999998864
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.19 E-value=0.00029 Score=59.27 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.+..+..+.+.+..-......+-|+|.+|+|||+||+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 47899988888887765422233567799999999999999999865
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.19 E-value=0.0003 Score=60.29 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHhc------------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE------------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|.+..++.+...+.. .......+-++|.+|+|||++|+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999998887754 11234567799999999999999998865
No 71
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.19 E-value=0.00035 Score=56.60 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=30.5
Q ss_pred HHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 163 ILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 163 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-.++|.+.+........+++|+|..|+|||||++.+..-.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555554333367899999999999999999998765
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.19 E-value=0.00035 Score=61.10 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.+..++.+-..+... ......+.++|++|+||||||+.+.+..
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4688877777766555432 2345778999999999999999999865
No 73
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.19 E-value=0.00041 Score=67.84 Aligned_cols=48 Identities=29% Similarity=0.300 Sum_probs=37.3
Q ss_pred CcccchHHHHHHHHHHHhc----c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..+++|.+++.. . -.....+.|+|.+|+||||||+.+.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3578988888888777653 1 1245678999999999999999998754
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.17 E-value=0.00074 Score=57.86 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+..+.++|++|+|||+||+.+.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999976
No 75
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.15 E-value=0.0021 Score=56.81 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=57.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~l 253 (287)
.-.++-|+|.+|+||||||..+.... . + .-..++|++....++.. .+.+++..... ....+.+++...+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~-~-~-~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA-Q-K-AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H-H-TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH-H-H-CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 45688999999999999998887654 2 1 12367899988777654 24455542111 1123566666677
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
...++ ++--+||+|.+-.
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 76665 3456999999865
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.14 E-value=0.0004 Score=67.52 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|++..++.+++.|... ...-+-++|.+|+||||+|+.+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999765 34456799999999999999998864
No 77
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.12 E-value=0.00073 Score=54.43 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhcc-CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 160 QESILDQVWRCITEQ-KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 160 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++.++.+.+.+... .....+|+|.|..|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455677777777653 2356899999999999999999998754
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.11 E-value=0.00099 Score=64.69 Aligned_cols=93 Identities=23% Similarity=0.232 Sum_probs=56.0
Q ss_pred cccchHHHHHHHHHHHh----ccC-------CCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH
Q 043249 156 TIVGQESILDQVWRCIT----EQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM 224 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~----~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 224 (287)
++.|.++.+++|.+++. .++ ..++-|-++|++|+|||+||+.+.+.. ..+| +.|..+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~---~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEE---EEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeE---EEEEhH------
Confidence 46688877777766542 221 245678899999999999999999865 2232 333321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 225 QIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 225 ~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
+++.. +...+...+...+.........+|+||++..
T Consensus 273 ----~l~sk-------~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 ----EIMSK-------LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ----HHHSS-------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred ----Hhhcc-------cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 11111 1122233333444444556788899998854
No 79
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.10 E-value=0.0016 Score=57.46 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=55.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l~~~l 253 (287)
.-.++.|.|.+|+||||||..+.... .. .=..++|++....++... +.+++.....+ ...+.+++...+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 45789999999999999999987654 21 123578898887776542 44555421111 122455555555
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
....+ .+--+||+|.+-.
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 54443 4556999999854
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.07 E-value=0.00059 Score=58.84 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|.+..+.++.+.+..-......|-|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 357899988888888876532234556799999999999999999865
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.00027 Score=61.91 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHHHHH-hccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 155 RTIVGQESILDQVWRCI-TEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.+++|.+...+.+.+++ ..+ ....+.|+|+.|+||||+++.+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~--~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR--DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT--CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999888887 443 3333899999999999999999884
No 82
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.05 E-value=0.0019 Score=55.94 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=59.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccC---------CC-----CEEEEEEecCCCCHHHHHHHHHHHhCCCCC---
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH---------DF-----DVVIWSVVSREPNLMQIQEDIGKRIGFSTD--- 239 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~--- 239 (287)
.-.++-|+|.+|+||||||..+.... .... .. ..++|++....++...+.+ ++.+++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 45799999999999999999887642 1110 11 4788999888888877764 4555554210
Q ss_pred -C---CCCCCHH---HHHHHHHHHhC--CCcEEEEEeCCCC
Q 043249 240 -S---WQGKSFE---ERASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 240 -~---~~~~~~~---~l~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
. ....+.+ ++...+...+. .+--+||+|.+-.
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0 0112333 24445666654 3567999999864
No 83
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.05 E-value=0.0028 Score=55.72 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=57.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~l 253 (287)
.-.++.|+|.+|+||||||..+.... . + .=..++|++....++.. .+++++..... ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~-~-~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-Q-A-AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H-H-TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H-h-CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999987654 1 1 12357888888776653 24555542111 1123556665556
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
....+ .+.=+||+|.+-.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 55554 4566999999865
No 84
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.0006 Score=59.62 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+...+..+ ....+.++|+.|+||||+|+.+.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34689888888888888766 44448999999999999999998864
No 85
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.03 E-value=0.0011 Score=61.08 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=34.2
Q ss_pred CcccchHHHHHHHHHHH---hccC-------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCI---TEQK-------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.++.+.++.+.. .... .-.+-+.|+|.+|+||||||+.+.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46889887766665543 2210 112238899999999999999999865
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.99 E-value=0.00023 Score=58.50 Aligned_cols=89 Identities=19% Similarity=0.015 Sum_probs=49.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSWQGKSFEERASDITNT 256 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 256 (287)
.-.++.|+|..|.||||++..+.... .. ....+ ..+.-..+ .. -...|+++++.........+..++...+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~-~g~kV-li~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY-ADVKY-LVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH-TTCCE-EEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh-cCCEE-EEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 45788999999999999888877665 22 22333 33332222 22 2224455555422211122334455555555
Q ss_pred hCCCcE-EEEEeCCCC
Q 043249 257 LKHKKF-VLLSDDIWE 271 (287)
Q Consensus 257 l~~kr~-LlVLDDvw~ 271 (287)
+.+.++ +|++|.+-.
T Consensus 85 ~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQF 100 (223)
T ss_dssp TSCTTCCEEEECSGGG
T ss_pred hhCCCCCEEEEecCcc
Confidence 554555 999999854
No 87
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.97 E-value=0.0078 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.++|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987766
No 88
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.93 E-value=0.0021 Score=59.94 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=36.7
Q ss_pred CcccchHHHHHHHHHHHhc----cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.++..+.+.+.+.- ......++.++|++|+||||||+.+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578988877777654431 12256689999999999999999999865
No 89
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.93 E-value=0.0057 Score=52.44 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++++|.+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999987765
No 90
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.91 E-value=0.00093 Score=58.94 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHHhc-------------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITE-------------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.+..++.+...+.. .......+.++|++|+|||++|+.+.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999888888877731 11134678899999999999999998865
No 91
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.91 E-value=0.0013 Score=56.37 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=24.5
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 175 KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 175 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.....+|+|+|..|+|||||++.+....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999987765
No 92
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.90 E-value=0.00049 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 93
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.88 E-value=0.0094 Score=51.83 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|..|+||||+++.+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999988765
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.87 E-value=0.0032 Score=51.26 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=51.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC----------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---------------- 240 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---------------- 240 (287)
.-.++.|+|.+|+|||||++.+.... ... . ..+.|+... .....+...+. .++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~-~-~~v~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG-LRD-G-DPCIYVTTE--ESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH-HHH-T-CCEEEEESS--SCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-HHC-C-CeEEEEEcc--cCHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 34789999999999999999998654 211 1 134555443 34555544433 33321100
Q ss_pred -----CCCCCHHHHHHHHHHHhC---CCcEEEEEeCCCC
Q 043249 241 -----WQGKSFEERASDITNTLK---HKKFVLLSDDIWE 271 (287)
Q Consensus 241 -----~~~~~~~~l~~~l~~~l~---~kr~LlVLDDvw~ 271 (287)
....+..++...+...+. -+..+||||....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 011255666555555443 2334999999874
No 95
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.86 E-value=0.00062 Score=57.25 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=34.7
Q ss_pred CcccchHHHHHHHHHHHhc---c-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE---Q-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.+.+.+.. . ....+-+.|+|.+|+|||+||+.+.+..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4688988777777665431 1 1123346799999999999999999876
No 96
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.83 E-value=0.0016 Score=59.37 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=36.4
Q ss_pred CcccchHHHHHHHHHH---HhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRC---ITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~---L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.++.++.+..+ +..+....+-+-++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689999887765443 44443334568899999999999999999876
No 97
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.82 E-value=0.00073 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999764
No 98
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.82 E-value=0.01 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999987655
No 99
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.82 E-value=0.0067 Score=52.34 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=55.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHH-HHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEER-ASDITN 255 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l-~~~l~~ 255 (287)
++-|+|.+|+|||||+-.+.... .....=..++|++....++.. -+++++...+.. ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 78999999999999988876654 211112467899888887764 267777632211 12344554 333333
Q ss_pred H--hC-CCcEEEEEeCCCC
Q 043249 256 T--LK-HKKFVLLSDDIWE 271 (287)
Q Consensus 256 ~--l~-~kr~LlVLDDvw~ 271 (287)
. ++ ++.-|||+|-|-.
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 33 5788999999976
No 100
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.81 E-value=0.0013 Score=55.79 Aligned_cols=47 Identities=32% Similarity=0.309 Sum_probs=33.6
Q ss_pred CcccchHHHHHHHHHHHhcc------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ------------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|.++.++.|.+.+... ..... +.++|++|+|||||++.+.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc
Confidence 45778888888777654211 11223 8999999999999999998865
No 101
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.80 E-value=0.0009 Score=58.14 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=37.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|.+..++.+...+..+ .-+-++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999999888887765 357799999999999999998865
No 102
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.75 E-value=0.0036 Score=55.48 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC--CCCCCC
Q 043249 166 QVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFS--TDSWQG 243 (287)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~--~~~~~~ 243 (287)
++++.+..=. .-..++|+|..|+|||||++.+.+........+.| +++-+.+...... ++.+.+... ... .+
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~---~~~~~~~~~vV~at-ad 236 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVT---EMQRLVKGEVVAST-FD 236 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHH---HHHTTCSSEEEEEC-TT
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHH---HHHHHhCeEEEEeC-CC
Confidence 4444444322 45688999999999999999987654111223444 4577887643222 223333110 001 11
Q ss_pred CCHHHH------HHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 244 KSFEER------ASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 244 ~~~~~l------~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
...... +-.+.+++ +++..||++||+..-...+..+.
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs 281 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV 281 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHH
Confidence 121111 11123333 48999999999966223444443
No 103
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.74 E-value=0.00092 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999997654
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.73 E-value=0.001 Score=53.33 Aligned_cols=26 Identities=42% Similarity=0.310 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 105
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.73 E-value=0.0069 Score=54.16 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=55.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcccc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC----C---CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEE----HDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTD----S---WQGKS 245 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~----~---~~~~~ 245 (287)
.-.++.|+|.+|+|||||+..+.-.. ... ..-..++|++....++...+. .+++.++.... . ....+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCC
Confidence 45799999999999999999765322 111 123468888877766666543 36666654210 0 01122
Q ss_pred HHH---HHHHHHHHhC-CCcEEEEEeCCCC
Q 043249 246 FEE---RASDITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 246 ~~~---l~~~l~~~l~-~kr~LlVLDDvw~ 271 (287)
... ....+...+. .+.-+||+|.+-.
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 222 2223333332 5678999999865
No 106
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.72 E-value=0.0023 Score=56.06 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 158 VGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|+.+.-.+.+++.+... ......|.|+|+.|+||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45566677777776532 2255678999999999999999887654
No 107
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.72 E-value=0.0015 Score=54.42 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=32.3
Q ss_pred CcccchHHHHHHHHHHHh---cc------C-CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT---EQ------K-KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~------~-~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|.+..+.++.+... .. + .-.+-+.|+|.+|+|||||++.+.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457888766555544332 11 0 011228899999999999999999865
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.72 E-value=0.0052 Score=53.94 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=55.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCC----CEEEEEEecCCCCHHHHHHHHHHHhCCCC----------CCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF----DVVIWSVVSREPNLMQIQEDIGKRIGFST----------DSWQ 242 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F----~~~~wv~vs~~~~~~~i~~~i~~~~~~~~----------~~~~ 242 (287)
.-.++.|+|..|+|||||+..+.... ...... ..++|++....+....+ ..+++..+... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 56899999999999999999998754 111011 24588887665544443 33444433210 0001
Q ss_pred CCCHHHHHHHHHHHhC------CCcEEEEEeCCCC
Q 043249 243 GKSFEERASDITNTLK------HKKFVLLSDDIWE 271 (287)
Q Consensus 243 ~~~~~~l~~~l~~~l~------~kr~LlVLDDvw~ 271 (287)
.....++...+...+. .+.=+||||.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1112334444555554 4677999999976
No 109
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.70 E-value=0.0023 Score=52.06 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 162 SILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+.+-..+... ...+|.|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344444444433 67899999999999999999988764
No 110
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.70 E-value=0.00085 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|+|+|+.|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 111
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.001 Score=52.54 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 112
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.68 E-value=0.0013 Score=60.65 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+...+..+ .-+-++|.+|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 45799999999888877765 467899999999999999998865
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.67 E-value=0.0011 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|.|++|+||||+++.+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998765
No 114
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.0012 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999977
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.65 E-value=0.0013 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|+.|+|||||++.+....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 116
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.0022 Score=52.00 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 158 VGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-+.++..+.+...+... +..+|.|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455566666555544 67899999999999999999988764
No 117
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.62 E-value=0.0014 Score=52.61 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 118
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.62 E-value=0.0026 Score=53.80 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=32.9
Q ss_pred CcccchHHHHHHHHHHHh---cc--------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCIT---EQ--------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~--------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|.+..++++.+... .. .-... +.|+|..|+|||||++.+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc
Confidence 467888876665554332 11 01123 8899999999999999999865
No 119
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.012 Score=50.72 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhcccc-CCCCEEEEEEecC-CCCHHHHHHHHHHHhC
Q 043249 159 GQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEE-HDFDVVIWSVVSR-EPNLMQIQEDIGKRIG 235 (287)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~-~~F~~~~wv~vs~-~~~~~~i~~~i~~~~~ 235 (287)
|-++.++.+.+.+..+ +.+.+-++|++|+||||+|+.+.+...... .|.+. .++..+. ...... .+++++.+.
T Consensus 1 g~~~~~~~L~~~i~~~--~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--EGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTC--SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCC--CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHh
Confidence 3455667777777666 367889999999999999999977420111 24444 4454443 333333 345666554
No 120
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.60 E-value=0.0034 Score=51.26 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.+||.|.|++|+||||.|+.+....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998876
No 121
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.58 E-value=0.0015 Score=52.77 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998864
No 122
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.57 E-value=0.0026 Score=56.27 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=36.1
Q ss_pred CcccchHHHHHHHHHHHhc----------------------------cCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITE----------------------------QKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.|...+.. .......+.++|++|+||||+|+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578988888888776620 01134567899999999999999998865
No 123
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.56 E-value=0.0018 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|++|+||||+++.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 124
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.55 E-value=0.0015 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+.|.|+|+.|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998764
No 125
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.55 E-value=0.0018 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999997754
No 126
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.55 E-value=0.0034 Score=52.13 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 161 ESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 161 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+.++.+.+.........|.|.|++|+||||+|+.+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444444443333366789999999999999999998754
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.0017 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|+.|+|||||++.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 56799999999999999999998754
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.54 E-value=0.0015 Score=51.71 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|+|..|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998765
No 129
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.0015 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+|+.+....
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 130
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.53 E-value=0.0017 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|+.|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999997643
No 131
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.53 E-value=0.0017 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998876
No 132
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.53 E-value=0.0012 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~ 199 (287)
...+++|+|..|+|||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45789999999999999999643
No 133
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.53 E-value=0.02 Score=51.58 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.++|.+|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987665
No 134
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.52 E-value=0.014 Score=50.42 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=56.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhC-CC------------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIG-FS------------------ 237 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~-~~------------------ 237 (287)
.-.++.|.|.+|+||||||..+.... -.+ . ..++|++.. -+...+...++.... .+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~-g-~~vl~~slE--~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~ 141 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDN-D-DVVNLHSLE--MGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK 141 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTT-T-CEEEEEESS--SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHc-C-CeEEEEECC--CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHH
Confidence 45788999999999999999987654 222 2 567777655 345666665554311 00
Q ss_pred -----------C---CCCCCCCHHHHHHHHHHHhCC---CcEEEEEeCCCC
Q 043249 238 -----------T---DSWQGKSFEERASDITNTLKH---KKFVLLSDDIWE 271 (287)
Q Consensus 238 -----------~---~~~~~~~~~~l~~~l~~~l~~---kr~LlVLDDvw~ 271 (287)
. ......+..++...+++..+. ++.+||+|-+-.
T Consensus 142 l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~ 192 (315)
T 3bh0_A 142 LSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQL 192 (315)
T ss_dssp HHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGG
T ss_pred HHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchh
Confidence 0 011224667777777765542 234899998754
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.51 E-value=0.0033 Score=53.68 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 162 SILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 162 ~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+++++..+... .....+|.|.|++|+||||+|+.+....
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444432 2356789999999999999999998754
No 136
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.51 E-value=0.015 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|.+|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.50 E-value=0.0017 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 138
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.50 E-value=0.0017 Score=51.01 Aligned_cols=26 Identities=42% Similarity=0.354 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|++|+||||+++.+....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 44678899999999999999998765
No 139
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.48 E-value=0.0018 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998876
No 140
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.48 E-value=0.0012 Score=57.46 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=33.6
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+...+... ...-+-|+|.+|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhC
Confidence 35789888666554444332 22338899999999999999999865
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.47 E-value=0.0019 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998865
No 142
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.47 E-value=0.0021 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
+..+|+|.|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999866
No 143
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.45 E-value=0.01 Score=47.94 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|.|.|++|+||||.|+.+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 144
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.45 E-value=0.002 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998754
No 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.45 E-value=0.0015 Score=51.75 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998654
No 146
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.44 E-value=0.0021 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 147
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.43 E-value=0.0018 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999976
No 148
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.43 E-value=0.031 Score=50.46 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999887765
No 149
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.43 E-value=0.0027 Score=52.99 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhcc---CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 160 QESILDQVWRCITEQ---KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 160 r~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+...+.++..+..+ .....+|.|+|++|+||||+|+.+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344455555555433 2356789999999999999999998765
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.42 E-value=0.0023 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|.|.|+.|+||||+++.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.42 E-value=0.002 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|+|+|+.|+||||+++.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997654
No 152
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.41 E-value=0.014 Score=52.64 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.++|.+|+||||++..+....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 153
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.41 E-value=0.0021 Score=51.78 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+|+|+|+.|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999664
No 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.40 E-value=0.0022 Score=53.19 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998544
No 155
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.40 E-value=0.0019 Score=55.95 Aligned_cols=26 Identities=35% Similarity=0.715 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.+||+|.|-|||||||.+-.+---.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHHHH
Confidence 67999999999999999998876655
No 156
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.39 E-value=0.002 Score=51.88 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|+.|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998754
No 157
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.38 E-value=0.0025 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999775
No 158
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.38 E-value=0.0046 Score=53.60 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHHhcc--CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 158 VGQESILDQVWRCITEQ--KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|-...+..+...+... .....+|+|.|..|+|||||++.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34344444444333332 3456799999999999999999997765
No 159
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.38 E-value=0.0018 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999997643
No 160
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.37 E-value=0.002 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998765
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.37 E-value=0.0024 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+++.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998765
No 162
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.0028 Score=50.05 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55789999999999999999998876
No 163
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.36 E-value=0.0024 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 366899999999999999999998865
No 164
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.36 E-value=0.019 Score=52.14 Aligned_cols=91 Identities=18% Similarity=0.303 Sum_probs=52.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHHH----
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEER---- 249 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~l---- 249 (287)
..++|+|..|+|||||++.+.... .. .+-+.++++.+.+..+ ..++.+++...-.... ....+.+....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468899999999999999988765 22 2334567778887653 3345555543200000 00011111111
Q ss_pred --HHHHHHHh---CCCcEEEEEeCCCC
Q 043249 250 --ASDITNTL---KHKKFVLLSDDIWE 271 (287)
Q Consensus 250 --~~~l~~~l---~~kr~LlVLDDvw~ 271 (287)
.-.+.+++ +++..||++||+..
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11334443 58999999999965
No 165
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.33 E-value=0.025 Score=48.10 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.++.|+|.+|+|||||++.+....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988765
No 166
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.33 E-value=0.003 Score=50.55 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+++.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998754
No 167
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.33 E-value=0.028 Score=51.04 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=65.9
Q ss_pred HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCC------C-
Q 043249 167 VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFS------T- 238 (287)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~------~- 238 (287)
+++.|..=. +-.-++|+|..|+|||+|++.+.+.. .+.+-+.++++-+.+... ..++.+++...-... .
T Consensus 143 ~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 143 VVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 444454311 45678999999999999999998763 234557788888888654 445677776642221 0
Q ss_pred ---CCCCCCCHHH------HHHHHHHHh---CCCcEEEEEeCCCCcccccccc
Q 043249 239 ---DSWQGKSFEE------RASDITNTL---KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 239 ---~~~~~~~~~~------l~~~l~~~l---~~kr~LlVLDDvw~~~~~~~~i 279 (287)
....+..... ..-.+.+++ +++..||++||+..-...+..+
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEi 272 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEV 272 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHh
Confidence 0011222211 112244444 3799999999996522334444
No 168
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.32 E-value=0.0025 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999999999999997653
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.0026 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|+|+.|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998765
No 170
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.003 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.29 E-value=0.0023 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
No 172
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.29 E-value=0.0028 Score=52.90 Aligned_cols=26 Identities=19% Similarity=0.315 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999997754
No 173
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.28 E-value=0.0022 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997754
No 174
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.003 Score=49.71 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...|.+.|+.|+||||+++.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.26 E-value=0.0055 Score=53.88 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+.+.+.....+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555565444478899999999999999999987654
No 176
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0035 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 177
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.24 E-value=0.0025 Score=52.00 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998753
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.23 E-value=0.0031 Score=50.15 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 179
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.22 E-value=0.0034 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55799999999999999999997753
No 180
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.21 E-value=0.0034 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998864
No 181
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.19 E-value=0.0034 Score=49.50 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+++.+....
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 182
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.19 E-value=0.0056 Score=55.41 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHHhcc------------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ------------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.++.++.+...+... +...+-|.++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899998888887666321 1134568899999999999999998865
No 183
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.18 E-value=0.0034 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|..|+|||||++.+..-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999997654
No 184
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.17 E-value=0.0029 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 185
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.16 E-value=0.004 Score=48.20 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 55799999999999999999998753
No 186
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.16 E-value=0.004 Score=50.18 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCE
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDV 211 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~ 211 (287)
+..+|.|.|+.|+||||+++.+.... . ..+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l-~-~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL-C-AAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH-H-HTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-HcCCcE
Confidence 35689999999999999999998875 2 234554
No 187
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.15 E-value=0.0037 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+|+|+|+.|+||||+++.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999743
No 188
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.14 E-value=0.0039 Score=48.82 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998865
No 189
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.14 E-value=0.043 Score=47.62 Aligned_cols=41 Identities=7% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 161 ESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 161 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++..+.+.+.+..+ .-.+.+-++|+.|+||||+|+.+.+..
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHH
Confidence 44566666666554 134568899999999999999998765
No 190
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.14 E-value=0.0023 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=18.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999997765
No 191
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.13 E-value=0.014 Score=47.32 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=36.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhcccc---C-CCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEE---H-DFDVVIWSVVSREPNLMQIQEDIGKRIG 235 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~~~ 235 (287)
.-.+++|+|..|+|||||++.+.... ... . .-...+|+.-...+.... ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 45799999999999999999998743 111 1 134577777555444433 233444443
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.12 E-value=0.0037 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.11 E-value=0.004 Score=50.03 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998754
No 194
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.11 E-value=0.0041 Score=50.02 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCE
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDV 211 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~ 211 (287)
...+|.|.|+.|+||||+++.+.... . ..+++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l-~-~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL-K-NNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH-H-HTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcE
Confidence 45689999999999999999998865 3 235555
No 195
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.10 E-value=0.028 Score=51.29 Aligned_cols=93 Identities=18% Similarity=0.302 Sum_probs=61.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC------C-----CCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST------D-----SWQGK 244 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~------~-----~~~~~ 244 (287)
+-.-++|+|..|+|||+|++.+.+.. .+.|-++++++-+.+... ..++.+++...-.... . ...+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 45677999999999999999998863 244567889999988764 4466777765422210 0 00112
Q ss_pred CHH------HHHHHHHHHhC---CCcEEEEEeCCCC
Q 043249 245 SFE------ERASDITNTLK---HKKFVLLSDDIWE 271 (287)
Q Consensus 245 ~~~------~l~~~l~~~l~---~kr~LlVLDDvw~ 271 (287)
... ...-.+.++++ ++..||++||+..
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 211 12334566665 5899999999965
No 196
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.09 E-value=0.004 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.09 E-value=0.0042 Score=50.51 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|.|+.|+||||+++.+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678999999999999999998865
No 198
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.08 E-value=0.0094 Score=57.84 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+.+.+... ......+-++|++|+|||+||+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999998888877642 1123378999999999999999998875
No 199
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.03 E-value=0.0034 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|+|..|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998765
No 200
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.03 E-value=0.0048 Score=49.35 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999999999997753
No 201
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.02 E-value=0.0044 Score=50.69 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998864
No 202
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.01 E-value=0.0098 Score=51.53 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|.+|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999987765
No 203
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.00 E-value=0.0023 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|+|.|..|+||||+++.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998765
No 204
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.00 E-value=0.0045 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+...|.|.|+.|+||||+++.+....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998754
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.00 E-value=0.005 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 206
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.99 E-value=0.0042 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
. .+++|+|..|+|||||.+.+..-
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCC
Confidence 6 89999999999999999999753
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.99 E-value=0.0054 Score=49.56 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+++.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 208
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.97 E-value=0.0048 Score=53.03 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|..|+||||+++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999987754
No 209
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.95 E-value=0.0053 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997753
No 210
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.94 E-value=0.0052 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+|..|+|||||++.+..-.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998754
No 211
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.94 E-value=0.0042 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999998873
No 212
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.94 E-value=0.01 Score=52.63 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++-+.-.-....+++|+|+.|+|||||++.+....
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344444443333356799999999999999999998754
No 213
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.93 E-value=0.0057 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999955
No 214
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.93 E-value=0.014 Score=56.66 Aligned_cols=94 Identities=19% Similarity=0.235 Sum_probs=58.1
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCH
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNL 223 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~ 223 (287)
.++.|.++.++.|.+.+.-. -...+-+-++|++|+|||.||+++.+.. .. -++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----
Confidence 45678888888877665321 1234456799999999999999999865 22 2233331
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 224 MQIQEDIGKRIGFSTDSWQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 224 ~~i~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
. +++.. +-..++..+...+...-+...++|++|++..
T Consensus 545 ~----~l~s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 P----ELLTM-------WFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp H----HHHTT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred c----hhhcc-------ccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1 22221 1223444444444444456789999999864
No 215
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.92 E-value=0.005 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|.|+.|+||||+++.+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998866
No 216
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.92 E-value=0.0047 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|+.|+|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999865
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.91 E-value=0.093 Score=48.24 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999987654
No 218
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.90 E-value=0.0051 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~ 199 (287)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999999997
No 219
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.90 E-value=0.0072 Score=57.10 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=36.3
Q ss_pred CcccchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|.+..++.+...+..+ ..+.|+|..|+||||||+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccC
Confidence 34789988888777666654 588999999999999999998865
No 220
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.90 E-value=0.0043 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|..|+|||||.+.+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 221
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0027 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 222
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.89 E-value=0.03 Score=59.33 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=56.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l~~~l 253 (287)
..+++-|+|++|+||||||.++.... ..+=..++|+.+...++... ++.++..-..+ .....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 56799999999999999999987765 22223567888887777666 44555321111 112334455555
Q ss_pred HHHhC-CCcEEEEEeCCC
Q 043249 254 TNTLK-HKKFVLLSDDIW 270 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw 270 (287)
++..+ .+.-+||+|.+-
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55544 567899999984
No 223
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.88 E-value=0.0054 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997765
No 224
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.87 E-value=0.0055 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998875
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.85 E-value=0.012 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 56799999999999999999998765
No 226
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.82 E-value=0.0049 Score=49.08 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.|.|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 347799999999999999998754
No 227
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.82 E-value=0.005 Score=51.44 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998754
No 228
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.81 E-value=0.0056 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997643
No 229
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.78 E-value=0.006 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997754
No 230
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.77 E-value=0.0058 Score=51.38 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5579999999999999999998653
No 231
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.77 E-value=0.029 Score=49.68 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH-HHHHHHHHHhCCCCCCCC
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM-QIQEDIGKRIGFSTDSWQ 242 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~-~i~~~i~~~~~~~~~~~~ 242 (287)
--++++.|..=. +-.-++|+|..|+|||+|++.+.+........+.| +++-+.+..... ++.+++...+-. .. .
T Consensus 162 GiraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~~EV~d~~~~~~G~VV~--at-a 236 (427)
T 3l0o_A 162 STRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERPEEVTDIRESTNAIVIA--AP-F 236 (427)
T ss_dssp HHHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCHHHHSSSSSSCCSEEEE--CC-T
T ss_pred cchhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCcchHHHHHHHhCCeEEE--EC-C
Confidence 345666665422 45677999999999999999888764111233444 467777653211 111111100000 01 1
Q ss_pred CCCHHH-H-----HHHHHHHh--CCCcEEEEEeCCCCccccccccc
Q 043249 243 GKSFEE-R-----ASDITNTL--KHKKFVLLSDDIWESEIDLTKLG 280 (287)
Q Consensus 243 ~~~~~~-l-----~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i~ 280 (287)
+..... . .-.+.+++ +++..||++||+..-...+..+.
T Consensus 237 dep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs 282 (427)
T 3l0o_A 237 DMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVV 282 (427)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHH
Confidence 111111 1 11233343 48999999999976233455543
No 232
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.76 E-value=0.0039 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=17.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~ 199 (287)
...+++|+|+.|+|||||++.+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 233
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.74 E-value=0.03 Score=44.90 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|.|+.|+||||+++.+....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.72 E-value=0.0071 Score=49.91 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+++.+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 235
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.72 E-value=0.0059 Score=50.96 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999873
No 236
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.71 E-value=0.0044 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
-.+++|+|..|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999764
No 237
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.71 E-value=0.0071 Score=53.27 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|..|+||||+++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46799999999999999999987754
No 238
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.70 E-value=0.0056 Score=51.90 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|..|+|||||++.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999865
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.69 E-value=0.018 Score=47.29 Aligned_cols=32 Identities=34% Similarity=0.610 Sum_probs=26.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCE
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDV 211 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~ 211 (287)
....|.|.|+.|+||||+++.+.... .. .++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l-~~--~~~~ 56 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL-VK--DYDV 56 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-TT--TSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-hc--CCCc
Confidence 45789999999999999999999987 32 4554
No 240
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.68 E-value=0.0059 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999753
No 241
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.68 E-value=0.0058 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|..|+|||||.+.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999865
No 242
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.67 E-value=0.006 Score=50.22 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|+|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999997643
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.65 E-value=0.0069 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 5579999999999999999998753
No 244
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.65 E-value=0.0074 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|..|+|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 557999999999999999999865
No 245
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.64 E-value=0.0075 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5579999999999999999999874
No 246
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.64 E-value=0.0073 Score=47.85 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..-.++|+|..|+|||||.+.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998753
No 247
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.63 E-value=0.0062 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|..|+|||||++.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999865
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.63 E-value=0.0079 Score=47.29 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998765
No 249
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.63 E-value=0.0079 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+|+|.|+.|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999997754
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.62 E-value=0.0055 Score=49.90 Aligned_cols=25 Identities=40% Similarity=0.688 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999764
No 251
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.61 E-value=0.0064 Score=50.65 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999653
No 252
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.58 E-value=0.0092 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 55799999999999999999987643
No 253
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.57 E-value=0.016 Score=46.70 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 162 SILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 162 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-+..+..++..-. +...+.|+|++|+||||+|..+.+..
T Consensus 43 ~f~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 33555555555322 33468999999999999999998865
No 254
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.56 E-value=0.016 Score=50.61 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=27.2
Q ss_pred HHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 166 QVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.+++-+.-.-....+++|+|..|+|||||.+.+..-
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344444433346789999999999999999999754
No 255
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.56 E-value=0.0078 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999753
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.55 E-value=0.0078 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5579999999999999999999753
No 257
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.55 E-value=0.008 Score=50.38 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999753
No 258
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.55 E-value=0.014 Score=50.12 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 5679999999999999999998764
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.54 E-value=0.0087 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998865
No 260
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.01 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|.|+.|+||||+|+.+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998865
No 261
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.51 E-value=0.0091 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 262
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.50 E-value=0.0079 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 263
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.50 E-value=0.0095 Score=53.45 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHH
Q 043249 166 QVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 166 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.+.+.|..-.....+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444433223567999999999999999999987
No 264
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.49 E-value=0.0075 Score=50.31 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4468999999999999999998764
No 265
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.49 E-value=0.0091 Score=49.67 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998655
No 266
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.48 E-value=0.0087 Score=50.42 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4579999999999999999998753
No 267
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.47 E-value=0.0095 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 268
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.47 E-value=0.013 Score=56.77 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=38.3
Q ss_pred CCcccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 154 DRTIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|.+..++.+...+... ......+.++|.+|+|||++|+.+.+..
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 356789999888887776532 1233578999999999999999998865
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.023 Score=44.65 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|+|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999987653
No 270
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.44 E-value=0.0079 Score=51.08 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999998753
No 271
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.42 E-value=0.008 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999764
No 272
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.41 E-value=0.01 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|+|.|+.|+||||||+.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998865
No 273
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.40 E-value=0.15 Score=46.13 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=34.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
.-.++-|.|.+|+||||||..+.... -.. =..++|++... +...+...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~-a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM-SDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH-HHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH-HHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 45688999999999999999987765 222 13566665443 44455555443
No 274
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.36 E-value=0.013 Score=48.24 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....+|+|.|+.|+||||+++.+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999987654
No 275
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.35 E-value=0.0097 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|+|..|+|||||.+.++.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 276
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.32 E-value=0.018 Score=50.22 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=26.6
Q ss_pred HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 167 VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+++-+.....+..+|+|+|.+|+|||||+..+....
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 333333333467899999999999999999986543
No 277
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.31 E-value=0.086 Score=45.90 Aligned_cols=89 Identities=11% Similarity=-0.025 Sum_probs=55.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCC-C------------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGF-S------------------ 237 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~-~------------------ 237 (287)
.-.++.|.|.+|+||||||..+.... -. +=..++|++. .-+...+...++..... .
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~-a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~ 119 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA-LN--DDRGVAVFSL--EMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLA 119 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HH--TTCEEEEEES--SSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HH--cCCeEEEEeC--CCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHH
Confidence 44688999999999999999987765 22 2235566554 34566666666543210 0
Q ss_pred ------------CCCCCCCCHHHHHHHHHHHhCC--CcEEEEEeCCC
Q 043249 238 ------------TDSWQGKSFEERASDITNTLKH--KKFVLLSDDIW 270 (287)
Q Consensus 238 ------------~~~~~~~~~~~l~~~l~~~l~~--kr~LlVLDDvw 270 (287)
-......+..++...+++..+. +.-+||+|-+-
T Consensus 120 ~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLq 166 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQ 166 (338)
T ss_dssp HHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred HHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechH
Confidence 0011234667777777665542 56788888654
No 278
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.31 E-value=0.0089 Score=46.89 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~ 200 (287)
-|.|+|.+|+|||||.+.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999865
No 279
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.30 E-value=0.011 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 280
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.27 E-value=0.012 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999774
No 281
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.27 E-value=0.015 Score=45.45 Aligned_cols=25 Identities=44% Similarity=0.546 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 5567899999999999999998654
No 282
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.26 E-value=0.011 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 283
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.24 E-value=0.014 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 284
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.22 E-value=0.018 Score=52.06 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=54.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCCCC----EEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFD----VVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEER 249 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~----~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~l 249 (287)
.-++|+|..|+|||||+..+.+.. . .+-+ .++++-+.+... ..++.+++...-.... ....+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~-~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA-T--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC-B--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH-H--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 446899999999999999998875 3 2223 677888887644 4456666544310100 00112222111
Q ss_pred ------HHHHHHHhC---CCcEEEEEeCCCC
Q 043249 250 ------ASDITNTLK---HKKFVLLSDDIWE 271 (287)
Q Consensus 250 ------~~~l~~~l~---~kr~LlVLDDvw~ 271 (287)
.-.+.++++ ++..||++||+..
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 223566664 7899999999965
No 285
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.21 E-value=0.013 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|.+|+||||++..+....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 286
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.20 E-value=0.013 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|+|+.|+||||||+.+....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998765
No 287
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.20 E-value=0.0082 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 5679999999999999999998663
No 288
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.18 E-value=0.012 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|.+|+|||||...+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999999998753
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.18 E-value=0.011 Score=49.77 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
-.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 290
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.17 E-value=0.24 Score=44.72 Aligned_cols=53 Identities=9% Similarity=-0.060 Sum_probs=36.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKR 233 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 233 (287)
.-.++.|.|.+|+||||||..+.... -.. +=..++|++.. -+...+...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~-a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA-ALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 45688999999999999999987765 211 11346666654 3466666666543
No 291
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.14 E-value=0.012 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.++.|+|.+|+|||||+..+....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999987644
No 292
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.14 E-value=0.013 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5579999999999999999999764
No 293
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.13 E-value=0.041 Score=45.43 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=29.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEE
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSV 216 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~ 216 (287)
....|.|.|..|+||||+++.+.... . ..++.......
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~r 63 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRTR 63 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeeec
Confidence 45789999999999999999999877 3 34566344443
No 294
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.11 E-value=0.013 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45799999999999999999997754
No 295
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.11 E-value=0.012 Score=46.21 Aligned_cols=25 Identities=48% Similarity=0.425 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457899999999999998887644
No 296
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.10 E-value=0.013 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...|+++|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.09 E-value=0.015 Score=50.04 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|+|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999997654
No 298
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.07 E-value=0.08 Score=56.19 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=59.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l~~~l 253 (287)
.-.++-|+|.+|+||||||..+.... . ..=..++|++....++... ++.++...... ...+.+++...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~-a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 55799999999999999999997765 2 2223678888877776542 55566532211 234566666666
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
+...+ .+.=+||+|-+-.
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 65543 5566999999864
No 299
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.06 E-value=0.014 Score=51.25 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4578999999999999999999753
No 300
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.06 E-value=0.013 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998653
No 301
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.05 E-value=0.0098 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|..|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 567999999999999999999865
No 302
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.03 E-value=0.013 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999987654
No 303
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.03 E-value=0.017 Score=52.22 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|.+|+||||++..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999987755
No 304
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.03 E-value=0.025 Score=55.63 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHhcc-------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 156 TIVGQESILDQVWRCITEQ-------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++|.+..++.+...+... +.....+.|+|..|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789998888887776532 1223578999999999999999998865
No 305
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.02 E-value=0.014 Score=49.92 Aligned_cols=27 Identities=33% Similarity=0.690 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|+|+|-||+||||+|-.+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 367899999999999999999987765
No 306
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.018 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999998865
No 307
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.00 E-value=0.028 Score=50.52 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|+|||||.+.+....
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 56799999999999999999998754
No 308
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.99 E-value=0.016 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.+..|+|..|+|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999964
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.98 E-value=0.015 Score=44.20 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-|.++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999987653
No 310
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.98 E-value=0.015 Score=44.25 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 311
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.97 E-value=0.032 Score=46.82 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..-+..||.....+..-+.++|++|+|||++|..+.+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44456666554234556889999999999999999874
No 312
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.97 E-value=0.014 Score=51.30 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4579999999999999999999753
No 313
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.96 E-value=0.0076 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999997754
No 314
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.95 E-value=0.029 Score=43.86 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=25.9
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+.+ +... +..-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~--~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNH--QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTT--SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCC--CccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 3333 5567889999999999999998753
No 315
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.94 E-value=0.016 Score=51.00 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 5579999999999999999999753
No 316
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.91 E-value=0.013 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998654
No 317
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.90 E-value=0.017 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4578999999999999999999753
No 318
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.88 E-value=0.056 Score=49.95 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=60.9
Q ss_pred HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHH-HHHHHHHH----HhCCC--C-
Q 043249 167 VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLM-QIQEDIGK----RIGFS--T- 238 (287)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~-~i~~~i~~----~~~~~--~- 238 (287)
+++.|..=. +-.-++|+|..|+|||+|++.+.+.. +-+.++++-+.+..+.. ++.+++-+ ..+.. .
T Consensus 217 vID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~r 290 (588)
T 3mfy_A 217 VIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMER 290 (588)
T ss_dssp HHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGG
T ss_pred hhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccc
Confidence 444454311 45678999999999999999987643 34688889999876644 45555322 01100 0
Q ss_pred ----CCCCCCCHHHH------HHHHHHHh--CCCcEEEEEeCCCCcccccccc
Q 043249 239 ----DSWQGKSFEER------ASDITNTL--KHKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 239 ----~~~~~~~~~~l------~~~l~~~l--~~kr~LlVLDDvw~~~~~~~~i 279 (287)
....+...... .-.+.+++ .++..||++|++..-......+
T Consensus 291 tvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEi 343 (588)
T 3mfy_A 291 TVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREI 343 (588)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCCCC---
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHH
Confidence 01112222211 11234444 3899999999997524445554
No 319
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.88 E-value=0.014 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999764
No 320
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.87 E-value=0.017 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4578999999999999999999753
No 321
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.86 E-value=0.18 Score=45.61 Aligned_cols=91 Identities=9% Similarity=0.013 Sum_probs=55.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHH-hCCC------------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKR-IGFS------------------ 237 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~-~~~~------------------ 237 (287)
.-.++.|.|.+|+|||||+..+.... .... =..++|++... +...+...++.. .+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~-~~~~-g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~ 277 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV-ATKT-NENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLT 277 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH-HHHS-SCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhC-CCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHH
Confidence 45789999999999999999988765 2211 12566666443 445555554321 1110
Q ss_pred ------------CCCCCCCCHHHHHHHHHHHhC-CCcEEEEEeCCCC
Q 043249 238 ------------TDSWQGKSFEERASDITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 238 ------------~~~~~~~~~~~l~~~l~~~l~-~kr~LlVLDDvw~ 271 (287)
.......+..++...++.... .+.=+||+|.+-.
T Consensus 278 ~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 278 MAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp HHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGG
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence 001123466777777776654 4566899998754
No 322
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.86 E-value=0.017 Score=44.17 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998765
No 323
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.85 E-value=0.017 Score=43.81 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988764
No 324
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.84 E-value=0.018 Score=43.75 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|.++|.+|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999987643
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.84 E-value=0.019 Score=44.34 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5567899999999999999998764
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.84 E-value=0.028 Score=49.38 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|+.|+|||||.+.+....
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34599999999999999999986643
No 327
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.83 E-value=0.0078 Score=56.72 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=31.9
Q ss_pred CcccchHHHHHHHHHHHhccCC---------CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQKK---------NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++|.+..++.+.-.|..+.. ...-+-++|.+|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4467777766555444433310 01157899999999999999997654
No 328
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.015 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 329
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.81 E-value=0.016 Score=51.28 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 4578999999999999999999753
No 330
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.81 E-value=0.018 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999987753
No 331
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.81 E-value=0.037 Score=46.21 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++.+.+.....+...|.++|.+|+|||||...+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444443455678999999999999999998653
No 332
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.80 E-value=0.018 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 4578999999999999999999753
No 333
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.80 E-value=0.016 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~ 200 (287)
-|.++|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 468999999999999998854
No 334
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.80 E-value=0.024 Score=48.76 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|+|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 335
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.80 E-value=0.018 Score=43.90 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 336
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.80 E-value=0.017 Score=45.09 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998765
No 337
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.79 E-value=0.019 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4579999999999999999999753
No 338
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.78 E-value=0.015 Score=50.35 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...++.|.|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999864
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.78 E-value=0.016 Score=50.99 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++|+|..|+|||||++.+..-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999987654
No 340
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.77 E-value=0.021 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
No 341
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.76 E-value=0.016 Score=44.28 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.5
Q ss_pred eEEEEEccCCCcHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~ 199 (287)
--|.|+|.+|+|||||...+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999985
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.75 E-value=0.023 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|+|.+|+|||||...+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55678899999999999999988754
No 343
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.74 E-value=0.018 Score=44.40 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998775
No 344
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.72 E-value=0.018 Score=48.17 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=21.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|.|-||+||||+|..+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578889999999999999987766
No 345
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.72 E-value=0.029 Score=45.92 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=51.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC------------C----C
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFST------------D----S 240 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~------------~----~ 240 (287)
.-.++.|.|.+|+|||||+..+...... . =..++|++... +...+.+.+. +++... + .
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--~-~~~v~~~~~e~--~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~ 95 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--M-GEPGIYVALEE--HPVQVRQNMA-QFGWDVKPYEEKGMFAMVDAFTAG 95 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--T-TCCEEEEESSS--CHHHHHHHHH-TTTCCCHHHHHHTSEEEEECSTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--c-CCeEEEEEccC--CHHHHHHHHH-HcCCCHHHHhhCCcEEEEecchhh
Confidence 4568999999999999998877554311 1 12456666544 3455544332 222210 0 0
Q ss_pred ------------CCCCCHHHHHHHHHHHhC-CCcEEEEEeCCCC
Q 043249 241 ------------WQGKSFEERASDITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 241 ------------~~~~~~~~l~~~l~~~l~-~kr~LlVLDDvw~ 271 (287)
....+..++...+.+.+. .+.-++|+|.+-.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 96 IGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp TCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred cccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 012345566666666654 2344799998865
No 346
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.72 E-value=0.019 Score=44.37 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4556899999999999999988764
No 347
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.71 E-value=0.019 Score=45.07 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999877654
No 348
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.70 E-value=0.078 Score=55.49 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=58.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l~~~l 253 (287)
.-+++-|+|.+|+||||||..+.... . ..=..++|++....++... ++.++...... ...+.+++...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~-~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-H--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 45799999999999999999987765 2 1224688888888776642 55565432111 233556666666
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
...++ .+.-+||+|-+-.
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 65543 4566999999865
No 349
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.69 E-value=0.019 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.69 E-value=0.02 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 351
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.68 E-value=0.021 Score=44.84 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+...|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5667899999999999999998754
No 352
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.67 E-value=0.31 Score=44.69 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=54.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHh-CCCC-----------------
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRI-GFST----------------- 238 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~-~~~~----------------- 238 (287)
.-.++.|.|.+|+||||||..+.... - ..+=..++|++... +..++...++... +...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a-~~~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~ 316 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-G-TAMGKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFD 316 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-T-TTSCCCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-H-HhcCCcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHHH
Confidence 45788999999999999999987765 2 11123566766544 4666666554432 1110
Q ss_pred ---------------CCCCCCCHHHHHHHHHHHhC-CCcEEEEEeCCCC
Q 043249 239 ---------------DSWQGKSFEERASDITNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 239 ---------------~~~~~~~~~~l~~~l~~~l~-~kr~LlVLDDvw~ 271 (287)
......+.+++...+++..+ .+-=+||+|-+-.
T Consensus 317 ~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~ 365 (503)
T 1q57_A 317 QWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 365 (503)
T ss_dssp HHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence 00112456677766666543 3455889998754
No 353
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.66 E-value=0.021 Score=44.30 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
+..-|.|+|.+|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 556788999999999999998864
No 354
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.66 E-value=0.02 Score=43.67 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 355
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.63 E-value=0.015 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 4578999999999999999999764
No 356
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.63 E-value=0.02 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998754
No 357
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.63 E-value=0.021 Score=44.02 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...-|.|+|.+|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999987653
No 358
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.63 E-value=0.16 Score=46.29 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=57.3
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccccCCCC-EEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLL-KQVNNKFCSEEHDFD-VVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEER 249 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~v~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~l 249 (287)
+-.-++|+|..|+|||+|| ..+.+.. +-+ .++++-+++... ..++.+++...-.... ....+......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 3456789999999999995 5776643 345 457888888654 3456666655322110 00112222111
Q ss_pred ------HHHHHHHhC--CCcEEEEEeCCCCcccccccc
Q 043249 250 ------ASDITNTLK--HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 250 ------~~~l~~~l~--~kr~LlVLDDvw~~~~~~~~i 279 (287)
.-.+.++++ ++..||++||+..-...+..+
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REi 273 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYREL 273 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHH
Confidence 123445554 799999999996523344444
No 359
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.62 E-value=0.017 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEccCCCcHHHHHHHHHHH
Q 043249 181 IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~ 201 (287)
|+|+|..|+|||||.+.++..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 499999999999999998753
No 360
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.61 E-value=0.073 Score=43.13 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
...|.+-|..|+||||+++.+.... . ...+..+.+..-.......+.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL-E-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH-H-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999877 4 234533333332222223445555554
No 361
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.60 E-value=0.044 Score=45.92 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=27.7
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.++++.+...+.....|.++|.+|+|||||...+.+..
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444443345678899999999999999998653
No 362
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.60 E-value=0.013 Score=46.79 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
....|+|+|..|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998754
No 363
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.59 E-value=0.023 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+++|+|..|+|||||++.+....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45799999999999999999987643
No 364
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.59 E-value=0.025 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=20.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+.--|.|+|.+|+|||||...+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4456789999999999999888764
No 365
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.57 E-value=0.021 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...|.++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 366
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.56 E-value=0.022 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998865
No 367
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.56 E-value=0.022 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456789999999999999888764
No 368
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.56 E-value=0.02 Score=46.20 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..+|.|.|+.|+||||+++.+....
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999987643
No 369
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.56 E-value=0.024 Score=44.36 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
....|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457889999999999999998775
No 370
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.55 E-value=0.021 Score=49.97 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+-.+++|+|..|+|||||.+.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55799999999999999999999875
No 371
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.55 E-value=0.022 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998653
No 372
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.53 E-value=0.036 Score=51.09 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 158 VGQESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.+.+..+.+.+..-...++..+|.+.|+.|+||||+|+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 444445555555442223356789999999999999999999987
No 373
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.53 E-value=0.085 Score=42.73 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEE
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVV 212 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~ 212 (287)
....|.|-|..|+||||+++.+.... . ...+.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~v~ 38 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL-R-ERGIEVQ 38 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH-H-TTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCCcc
Confidence 34688999999999999999998876 3 2345553
No 374
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.50 E-value=0.021 Score=44.50 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999987653
No 375
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.50 E-value=0.057 Score=49.05 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 160 QESILDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 160 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....+..+...+..+ . +.+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~--~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEK--K-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSS--S-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--C-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344455555555544 2 388999999999999999998876
No 376
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.49 E-value=0.023 Score=44.69 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..--|.|+|..|+|||||...+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34567899999999999999987743
No 377
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.48 E-value=0.02 Score=44.11 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999998654
No 378
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.47 E-value=0.034 Score=47.66 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=25.3
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++++.+.+. -.+++++|..|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 444555443 3588999999999999999998 43
No 379
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.46 E-value=0.019 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 380
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.45 E-value=0.014 Score=51.27 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999999753
No 381
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.45 E-value=0.022 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|.|-||+||||+|..+....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHH
Confidence 688899999999999999987765
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.45 E-value=0.024 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 383
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.45 E-value=0.025 Score=44.48 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..--|.|+|.+|+|||||...+.+..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34567899999999999999988754
No 384
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.43 E-value=0.017 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVN 199 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~ 199 (287)
...-|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999984
No 385
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.43 E-value=0.025 Score=50.30 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.-.+++|+|+.|+|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 567999999999999999999975
No 386
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.41 E-value=0.022 Score=43.81 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
--|.|+|..|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 387
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.40 E-value=0.025 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 388
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.40 E-value=0.025 Score=43.90 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
--|.++|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988754
No 389
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.39 E-value=0.14 Score=40.90 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=44.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDS---WQGKSFEERASDITNTL 257 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~---~~~~~~~~l~~~l~~~l 257 (287)
|.|=|.-|+||||.++.+.+.. +.. ... +++..-.......+..+.++..-...... .-..+-.+....+...|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L-~~~-g~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL-EKR-GKK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-HHT-TCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHC-CCc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777999999999999999887 322 233 33333332223334444444332110000 00001122334566666
Q ss_pred CCCcEEEEEeCCCC
Q 043249 258 KHKKFVLLSDDIWE 271 (287)
Q Consensus 258 ~~kr~LlVLDDvw~ 271 (287)
...+ .+|.|--..
T Consensus 80 ~~g~-~Vi~DRy~~ 92 (197)
T 3hjn_A 80 SEGY-AVLLDRYTD 92 (197)
T ss_dssp TTTC-EEEEESCHH
T ss_pred HCCC-eEEecccch
Confidence 6554 567776543
No 390
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.39 E-value=0.025 Score=43.86 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC
Confidence 34567899999999999999987643
No 391
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.38 E-value=0.02 Score=45.50 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
..-|.++|.+|+|||||...+.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999864
No 392
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.38 E-value=0.025 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..-|.|+|.+|+|||||...+.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998765
No 393
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.37 E-value=0.021 Score=45.22 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.++|.+|+|||||.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4456789999999999999987664
No 394
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.37 E-value=0.025 Score=43.80 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998854
No 395
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.36 E-value=0.025 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
.--|.|+|.+|+|||||...+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998864
No 396
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.025 Score=44.62 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998765
No 397
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.35 E-value=0.043 Score=49.57 Aligned_cols=93 Identities=10% Similarity=0.185 Sum_probs=54.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHhcccc--------CCCC-EEEEEEecCCCC-HHHHHHHHHHHhCCC-----CCCCC
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKFCSEE--------HDFD-VVIWSVVSREPN-LMQIQEDIGKRIGFS-----TDSWQ 242 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~~~v~--------~~F~-~~~wv~vs~~~~-~~~i~~~i~~~~~~~-----~~~~~ 242 (287)
-.-++|+|..|+|||||+..+.+.. ... ++=+ .++++-+.+... ..++.+++...-... ....+
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 3456899999999999999998875 321 1222 677788887644 345555544321000 00111
Q ss_pred CCCHHHH-----HHHHHHHhC---CCcEEEEEeCCCC
Q 043249 243 GKSFEER-----ASDITNTLK---HKKFVLLSDDIWE 271 (287)
Q Consensus 243 ~~~~~~l-----~~~l~~~l~---~kr~LlVLDDvw~ 271 (287)
....... .-.+.++++ ++..||++||+..
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1122111 223566654 6899999999965
No 398
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.34 E-value=0.023 Score=45.00 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|.+|+|||||...+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999998764
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.33 E-value=0.026 Score=44.83 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...-|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45667899999999999999988753
No 400
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.33 E-value=0.035 Score=42.37 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999764
No 401
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.32 E-value=0.019 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 402
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.32 E-value=0.026 Score=44.81 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 44568999999999999999987653
No 403
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.32 E-value=0.019 Score=50.55 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|.|||||++.+..-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999998754
No 404
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.31 E-value=0.027 Score=43.51 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.++|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3467899999999999999987654
No 405
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.31 E-value=0.058 Score=44.07 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=34.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGK 232 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~ 232 (287)
....|.|.|..|+||||+++.+.+.. .....+++.....-.......+.+++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l-~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL-SEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 56789999999999999999998876 32123444331222222223344555554
No 406
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.31 E-value=0.031 Score=52.05 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...++.|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998875
No 407
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.30 E-value=0.08 Score=48.41 Aligned_cols=90 Identities=10% Similarity=0.207 Sum_probs=51.2
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccccCCCC-EEEEEEecCCCC-HHHHHHHHHHHhCC---------CCCCCCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLL-KQVNNKFCSEEHDFD-VVIWSVVSREPN-LMQIQEDIGKRIGF---------STDSWQGK 244 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~v~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~~~~---------~~~~~~~~ 244 (287)
+-.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+++... ..++.+++...-.. .+.+....
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3456689999999999995 5776643 244 467888888654 33455554432110 00000000
Q ss_pred CH-HHHHHHHHHHh--CCCcEEEEEeCCCC
Q 043249 245 SF-EERASDITNTL--KHKKFVLLSDDIWE 271 (287)
Q Consensus 245 ~~-~~l~~~l~~~l--~~kr~LlVLDDvw~ 271 (287)
-. ....-.+.+++ +++..||++||+..
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 00 11122233433 48999999999865
No 408
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.28 E-value=0.082 Score=49.05 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=57.6
Q ss_pred HHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHH----HhCCCC---
Q 043249 167 VWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGK----RIGFST--- 238 (287)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~----~~~~~~--- 238 (287)
+++.|..=. +-.-++|+|..|+|||+|+..+.+.. +-+.++++-+.+..+ ..++++++-+ ..+...
T Consensus 222 vID~l~Pig-rGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~r 295 (600)
T 3vr4_A 222 VIDTFFPVT-KGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMER 295 (600)
T ss_dssp HHHHHSCCB-TTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGG
T ss_pred hhhccCCcc-CCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccc
Confidence 445554322 45678999999999999999997754 346788888887633 3344444321 011000
Q ss_pred ----CCCCCCCHHHH------HHHHHHHhC--CCcEEEEEeCCCC
Q 043249 239 ----DSWQGKSFEER------ASDITNTLK--HKKFVLLSDDIWE 271 (287)
Q Consensus 239 ----~~~~~~~~~~l------~~~l~~~l~--~kr~LlVLDDvw~ 271 (287)
....+...... .-.+.++++ ++..||++|++..
T Consensus 296 tvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 340 (600)
T 3vr4_A 296 TVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSR 340 (600)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 00112222211 122445553 7899999999863
No 409
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.28 E-value=0.029 Score=46.10 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...-++|.|++|+||||+|+.+....
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998765
No 410
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.027 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987653
No 411
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.26 E-value=0.027 Score=45.13 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999999875
No 412
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.26 E-value=0.025 Score=48.39 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999865
No 413
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.25 E-value=0.027 Score=44.22 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|..|+|||||...+.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999875
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.023 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+.+-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4578999999999999999998764
No 415
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.24 E-value=0.15 Score=46.63 Aligned_cols=91 Identities=11% Similarity=0.142 Sum_probs=52.9
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccccCCCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHHH-
Q 043249 177 NNGIIGLYGMGGIGKTTLL-KQVNNKFCSEEHDFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEER- 249 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~l- 249 (287)
+-.-++|+|..|+|||+|+ ..+.|.. .+--.++++-+++..+ ..++.+++.+.-.... ....+......
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 3456789999999999996 5666632 2222467888988754 4456666544311110 00111222111
Q ss_pred -----HHHHHHHh--CCCcEEEEEeCCCC
Q 043249 250 -----ASDITNTL--KHKKFVLLSDDIWE 271 (287)
Q Consensus 250 -----~~~l~~~l--~~kr~LlVLDDvw~ 271 (287)
.-.+.+++ +++..||++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 12234444 48999999999965
No 416
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.23 E-value=0.044 Score=46.91 Aligned_cols=33 Identities=24% Similarity=0.557 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
++++...+. -.+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 444544442 358899999999999999999764
No 417
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.028 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988764
No 418
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.028 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456789999999999999998764
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.18 E-value=0.029 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467899999999999999998643
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.17 E-value=0.032 Score=49.71 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+|.|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 588999999999999999998765
No 421
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.17 E-value=0.029 Score=44.12 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..--|.|+|.+|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34567899999999999999988753
No 422
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.16 E-value=0.029 Score=43.98 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..--|.|+|..|+|||||...+.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999998754
No 423
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.15 E-value=0.16 Score=46.41 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=56.8
Q ss_pred CceEEEEEccCCCcHHHHH-HHHHHHhccccCCCC-EEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLL-KQVNNKFCSEEHDFD-VVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEER 249 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa-~~v~~~~~~v~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~l 249 (287)
+-.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+++... +.++.+++...-.... ....+......
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 4456789999999999995 5676643 345 467888888654 3455666654211100 00112221111
Q ss_pred ------HHHHHHHhC--CCcEEEEEeCCCCcccccccc
Q 043249 250 ------ASDITNTLK--HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 250 ------~~~l~~~l~--~kr~LlVLDDvw~~~~~~~~i 279 (287)
.-.+.++++ ++..||++||+..-...+..+
T Consensus 249 ~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REi 286 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQL 286 (515)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHH
Confidence 123445554 799999999996523344444
No 424
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.14 E-value=0.029 Score=44.87 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
....|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456789999999999999998764
No 425
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.13 E-value=0.18 Score=46.09 Aligned_cols=111 Identities=9% Similarity=0.152 Sum_probs=61.1
Q ss_pred HHHHHhccCCCceEEEEEccCCCcHHHH-HHHHHHHhccc----cCCCC-EEEEEEecCCCC-HHHHHHHHHHHhCCCC-
Q 043249 167 VWRCITEQKKNNGIIGLYGMGGIGKTTL-LKQVNNKFCSE----EHDFD-VVIWSVVSREPN-LMQIQEDIGKRIGFST- 238 (287)
Q Consensus 167 l~~~L~~~~~~~~vi~I~G~gGvGKTtL-a~~v~~~~~~v----~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~~~~~~- 238 (287)
.++.|..=. +-.-++|+|..|+|||+| +..+.+.. .. .++-+ .++++-+++... ..++.+++...-....
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 344444321 345678999999999999 45676654 21 12344 577888888654 4455666654211100
Q ss_pred ---CCCCCCCHHHH------HHHHHHHhC--CCcEEEEEeCCCCcccccccc
Q 043249 239 ---DSWQGKSFEER------ASDITNTLK--HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 239 ---~~~~~~~~~~l------~~~l~~~l~--~kr~LlVLDDvw~~~~~~~~i 279 (287)
....+...... .-.+.++++ ++..||++||+..-...+..+
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REi 281 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQM 281 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHH
Confidence 00111221111 123445554 799999999996522344444
No 426
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.10 E-value=0.031 Score=43.90 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 427
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.09 E-value=0.017 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|.|..|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999987654
No 428
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.08 E-value=0.027 Score=44.59 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987643
No 429
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.07 E-value=0.032 Score=43.71 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999987653
No 430
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.05 E-value=0.033 Score=46.77 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999987653
No 431
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.03 E-value=0.032 Score=44.16 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|.+|+|||||...+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567889999999999999998754
No 432
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.03 E-value=0.033 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.123 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|..|+|||||...+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4456889999999999999998764
No 433
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.01 E-value=0.039 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=19.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.++.|+|..|+||||++..+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999985554443
No 434
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.01 E-value=0.02 Score=55.91 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHHhcc-----------CCCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 155 RTIVGQESILDQVWRCITEQ-----------KKNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|.+..++.+.+.+... -.....+.++|++|+||||||+.+.+..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 45688888888887766421 0234567899999999999999999876
No 435
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.033 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
--|.|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999997653
No 436
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.98 E-value=0.041 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.++|++|.||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997654
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.96 E-value=0.028 Score=44.49 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=20.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999988754
No 438
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.95 E-value=0.029 Score=46.02 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...-|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998754
No 439
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.94 E-value=0.021 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-.+++|+|..|.|||||++.+..-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997754
No 440
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.94 E-value=0.034 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987643
No 441
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.93 E-value=0.073 Score=48.06 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHHhccC---------CCceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 158 VGQESILDQVWRCITEQK---------KNNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 158 vGr~~~~~~l~~~L~~~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.|.++-++.+.+.+...+ ....-++|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 577777888877775321 234578999999999999999997753
No 442
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.92 E-value=0.028 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998654
No 443
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.035 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998764
No 444
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.89 E-value=0.034 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-..++|+|..|+|||||++.+.+-.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 56789999999999999999998865
No 445
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.87 E-value=0.025 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.0
Q ss_pred CceE--EEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGI--IGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~v--i~I~G~gGvGKTtLa~~v~~~ 201 (287)
...+ ++|+|..|+|||||.+.+...
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3356 999999999999999999763
No 446
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.85 E-value=0.1 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+..+|.|-|+.|+||||+++.+....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999998765
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.83 E-value=0.033 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
+.--|.|+|.+|+|||||...+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445689999999999999999854
No 448
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.038 Score=43.42 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999865
No 449
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.79 E-value=0.031 Score=43.51 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+.--|.|+|..|+|||||...+.+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999764
No 450
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.78 E-value=0.031 Score=44.97 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999998753
No 451
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.76 E-value=0.039 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
-.|.+.|.||+||||+|-.+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 346788999999999988887765
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.76 E-value=0.036 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|+|..|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 588999999999999999998654
No 453
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.74 E-value=0.039 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 4456889999999999999998764
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.74 E-value=0.039 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..-|.|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3467899999999999999987643
No 455
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.74 E-value=0.039 Score=43.95 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|.+|+|||||...+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 456
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.74 E-value=0.035 Score=43.22 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998754
No 457
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.73 E-value=0.047 Score=44.31 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
....|.|+|.+|+|||||...+.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55678999999999999999987653
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.72 E-value=0.035 Score=51.58 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|+|||||++.+..-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 459
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.72 E-value=0.041 Score=43.24 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...-|.|+|..|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5677899999999999999998654
No 460
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.70 E-value=0.042 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.+++|+|..|+|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 899999999999999999998654
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.038 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
...-|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999998863
No 462
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.69 E-value=0.04 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 463
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.65 E-value=0.041 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998765
No 464
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.63 E-value=0.048 Score=49.71 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998765
No 465
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.61 E-value=0.022 Score=44.19 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=10.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999987654
No 466
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.60 E-value=0.062 Score=43.12 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|+|+||.|+||+|.|..+-+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999986643
No 467
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.60 E-value=0.038 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5689999999999999999998765
No 468
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.59 E-value=0.038 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|..|+|||||...+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998654
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.57 E-value=0.039 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999763
No 470
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=93.56 E-value=0.079 Score=48.93 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=32.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCC
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREP 221 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~ 221 (287)
+-.-++|+|..|+|||+|+..+.+.. +-+.++++-+++..
T Consensus 220 rGqr~~Ifg~~g~GKT~l~~~ia~~~-----~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 220 MGGTAAIPGPFGSGKSVTQQSLAKWS-----NADVVVYVGSGERG 259 (578)
T ss_dssp TTCEEEECCCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECH
T ss_pred CCCEEeeeCCCCccHHHHHHHHHhcc-----CCCEEEEEEecccH
Confidence 45678999999999999999997754 34678888888763
No 471
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.53 E-value=0.058 Score=48.94 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=59.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccC--CCCEEEEEEecCCCC-HHHHHHHHHHHhCCCC----CCCCCCCHHH-
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEH--DFDVVIWSVVSREPN-LMQIQEDIGKRIGFST----DSWQGKSFEE- 248 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~--~F~~~~wv~vs~~~~-~~~i~~~i~~~~~~~~----~~~~~~~~~~- 248 (287)
+-.-++|+|..|+|||+|+..+.+.. .... .=+.++++-+.+... ..++.+++...-.... ....+.....
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 34556789999999999999998876 3211 114677888887654 4456666655311100 0001222211
Q ss_pred -----HHHHHHHHhC---CCcEEEEEeCCCCcccccccc
Q 043249 249 -----RASDITNTLK---HKKFVLLSDDIWESEIDLTKL 279 (287)
Q Consensus 249 -----l~~~l~~~l~---~kr~LlVLDDvw~~~~~~~~i 279 (287)
..-.+.++++ ++..||++||+..-...+..+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEi 268 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQM 268 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHH
Confidence 1223555554 699999999986523344444
No 472
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.51 E-value=0.039 Score=43.83 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=19.9
Q ss_pred eEEEEE-ccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLY-GMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~-G~gGvGKTtLa~~v~~~~ 202 (287)
++|+|+ +-||+||||+|..+....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL 26 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH
Confidence 578888 669999999999886654
No 473
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.046 Score=50.79 Aligned_cols=25 Identities=48% Similarity=0.826 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5579999999999999999998763
No 474
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.034 Score=51.64 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-.+++|+|..|+|||||++.+..-.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998743
No 475
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.46 E-value=0.05 Score=44.51 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=22.0
Q ss_pred CceEEEEEcc-CCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGM-GGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~-gGvGKTtLa~~v~~~~ 202 (287)
..++|+|+|. ||+||||+|..+....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~l 29 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFAL 29 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHH
Confidence 5678999954 9999999999988766
No 476
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.44 E-value=0.061 Score=40.87 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
..+..|+|..|.||||+..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999864
No 477
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.37 E-value=0.069 Score=41.64 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNN 200 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~ 200 (287)
+.--|.|+|.+|+|||||...+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456689999999999999999854
No 478
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.36 E-value=0.045 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 043249 180 IIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 180 vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4679999999999999987653
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.32 E-value=0.045 Score=51.63 Aligned_cols=93 Identities=24% Similarity=0.306 Sum_probs=52.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCC--CC-EEEEEEecCCC------CHHHH--------------HHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHD--FD-VVIWSVVSREP------NLMQI--------------QEDIGKR 233 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~--F~-~~~wv~vs~~~------~~~~i--------------~~~i~~~ 233 (287)
.-.+++|+|..|+|||||++.+..-..-.... +. .+.++ .|+. ++... ..++++.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v--~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK--PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEE--ecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 34689999999999999999998753111111 22 23333 3321 22222 2334555
Q ss_pred hCCCC---CCCCCCCHHHHH-HHHHHHhCCCcEEEEEeCCCC
Q 043249 234 IGFST---DSWQGKSFEERA-SDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 234 ~~~~~---~~~~~~~~~~l~-~~l~~~l~~kr~LlVLDDvw~ 271 (287)
++... ......+-.+.+ -.|...|..+.=+|+||+-.+
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 55431 112233433332 346677777888899998766
No 480
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.32 E-value=0.045 Score=45.63 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.3
Q ss_pred CceEEEEE-ccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLY-GMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~-G~gGvGKTtLa~~v~~~~ 202 (287)
..++|+|+ |-||+||||+|..+....
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLL 52 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHH
Confidence 67899997 569999999999998776
No 481
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.31 E-value=0.037 Score=43.36 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+.--|.|+|..|+|||||...+.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999987653
No 482
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.31 E-value=0.049 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHHH
Q 043249 176 KNNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 176 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.....|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35678999999999999999999764
No 483
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.29 E-value=0.035 Score=49.90 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 043249 181 IGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 181 i~I~G~gGvGKTtLa~~v~~~~ 202 (287)
|+|+|..|+|||||.+.+....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4999999999999999997643
No 484
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.26 E-value=0.042 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 485
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.25 E-value=0.045 Score=43.88 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
.-+.|.|.|..|+||||||..+....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34678899999999999999987643
No 486
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.23 E-value=0.22 Score=52.16 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=59.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHhccccCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDFDVVIWSVVSREPNLMQIQEDIGKRIGFSTDSW---QGKSFEERASDI 253 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~l~~~l 253 (287)
.-++|-|+|+.|+||||||-++.... +..=..++|+...+.+++.- +++++...+.+ ...+-++-...+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 55899999999999999999998754 33445788999888877765 77777643221 112223333445
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 043249 254 TNTLK-HKKFVLLSDDIWE 271 (287)
Q Consensus 254 ~~~l~-~kr~LlVLDDvw~ 271 (287)
...++ +.-=+||+|-|-.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 55555 5667899998843
No 487
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.21 E-value=0.057 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998754
No 488
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.16 E-value=0.052 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 5578999999999999999998653
No 489
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.049 Score=51.35 Aligned_cols=91 Identities=24% Similarity=0.189 Sum_probs=50.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHhccccCC-C-C-EEEEEEecCC--------------------CCHHHHHHHHHHHhC
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKFCSEEHD-F-D-VVIWSVVSRE--------------------PNLMQIQEDIGKRIG 235 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~-F-~-~~~wv~vs~~--------------------~~~~~i~~~i~~~~~ 235 (287)
.+++|+|..|+|||||++.+..-..-.... . . ...++ .+. +.......++++.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~--~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK--PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEE--CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEe--cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 579999999999999999998743111111 0 0 11222 111 111223344555555
Q ss_pred CCC---CCCCCCCHHHHH-HHHHHHhCCCcEEEEEeCCCC
Q 043249 236 FST---DSWQGKSFEERA-SDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 236 ~~~---~~~~~~~~~~l~-~~l~~~l~~kr~LlVLDDvw~ 271 (287)
... ......+-.+.+ -.|.+.|..+.=+|+||+-.+
T Consensus 457 l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 421 112334443333 346777888888888998765
No 490
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.15 E-value=0.054 Score=46.38 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+...|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999998865
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.051 Score=51.21 Aligned_cols=25 Identities=44% Similarity=0.719 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|+|||||.+.+..-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4579999999999999999998753
No 492
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.07 E-value=0.05 Score=47.92 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
..++|+|+|.+|+|||||.+.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 56779999999999999999987643
No 493
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.06 E-value=0.053 Score=45.23 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHHH
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998765
No 494
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.04 E-value=0.056 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHH
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.-.+++|+|..|.|||||++.+..-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999998753
No 495
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.04 E-value=0.11 Score=41.66 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHHHh
Q 043249 179 GIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 179 ~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
+-|+|=|.-|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 457888999999999999999987
No 496
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.03 E-value=0.06 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999999764
No 497
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.02 E-value=0.11 Score=48.37 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.+.|+.|+||||+|+.+....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 498
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.02 E-value=0.22 Score=40.54 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=51.8
Q ss_pred HHHHHHHHhccCCCceEEEEEccCCCcHHHHHHHHHHHhccccCCC-CEEEEEEecCCCCHHHHHHHHHHHhCCCCCC--
Q 043249 164 LDQVWRCITEQKKNNGIIGLYGMGGIGKTTLLKQVNNKFCSEEHDF-DVVIWSVVSREPNLMQIQEDIGKRIGFSTDS-- 240 (287)
Q Consensus 164 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~~~~~i~~~i~~~~~~~~~~-- 240 (287)
.++++..+..+ ..+.|+|..|+||||+.....-+.......+ .+.+.+..........+.+.+...++.....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~ 141 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSC 141 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSE
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceE
Confidence 34444455444 5789999999999987665533220222222 2333333332222334444444433321000
Q ss_pred ----------------CCCCCHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 043249 241 ----------------WQGKSFEERASDITNTLKHKKFVLLSDDIWE 271 (287)
Q Consensus 241 ----------------~~~~~~~~l~~~l~~~l~~kr~LlVLDDvw~ 271 (287)
.--.+...+...+...+.+=+ +||+|++..
T Consensus 142 g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 142 GYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp EEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred EEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 001244555566655444444 689999976
No 499
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.01 E-value=0.059 Score=43.53 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHHH
Q 043249 178 NGIIGLYGMGGIGKTTLLKQVNNK 201 (287)
Q Consensus 178 ~~vi~I~G~gGvGKTtLa~~v~~~ 201 (287)
.--|.|+|.+|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 500
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.98 E-value=0.073 Score=49.80 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHHHh
Q 043249 177 NNGIIGLYGMGGIGKTTLLKQVNNKF 202 (287)
Q Consensus 177 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 202 (287)
...+|.|.|+.|+||||+|+.+....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
Done!