Query 043250
Match_columns 507
No_of_seqs 424 out of 2848
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-88 6.4E-93 762.8 51.3 503 1-507 12-529 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 9E-41 1.9E-45 359.6 26.0 300 177-482 161-498 (889)
3 PLN03194 putative disease resi 100.0 7.9E-40 1.7E-44 280.7 14.2 150 1-165 26-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 3.5E-38 7.5E-43 306.5 13.3 262 179-444 1-283 (287)
5 smart00255 TIR Toll - interleu 99.8 2.9E-20 6.2E-25 160.3 11.7 134 1-137 1-138 (140)
6 PF01582 TIR: TIR domain; Int 99.8 1.5E-21 3.3E-26 167.9 2.8 129 4-134 1-140 (141)
7 PRK04841 transcriptional regul 99.7 2.8E-16 6.1E-21 176.8 27.0 291 169-483 9-336 (903)
8 PF13676 TIR_2: TIR domain; PD 99.7 4.3E-17 9.3E-22 132.1 3.0 87 4-96 1-87 (102)
9 COG3899 Predicted ATPase [Gene 99.6 1.4E-14 3.1E-19 157.8 16.5 319 175-505 1-404 (849)
10 COG2909 MalT ATP-dependent tra 99.6 1.8E-13 3.9E-18 141.8 20.6 293 169-485 14-344 (894)
11 PRK00411 cdc6 cell division co 99.5 2.2E-12 4.8E-17 131.1 24.2 278 171-459 27-357 (394)
12 TIGR00635 ruvB Holliday juncti 99.5 1.2E-12 2.7E-17 128.1 16.5 257 174-465 4-294 (305)
13 PRK00080 ruvB Holliday junctio 99.4 3E-12 6.5E-17 126.3 17.0 262 170-464 21-314 (328)
14 TIGR02928 orc1/cdc6 family rep 99.4 8.1E-11 1.7E-15 118.4 26.8 279 171-460 12-350 (365)
15 PF01637 Arch_ATPase: Archaeal 99.4 7.2E-13 1.6E-17 124.4 10.6 192 176-372 1-234 (234)
16 PF05729 NACHT: NACHT domain 99.3 7.2E-11 1.6E-15 104.5 12.7 142 198-341 1-163 (166)
17 TIGR03015 pepcterm_ATPase puta 99.2 8.6E-10 1.9E-14 106.0 19.6 174 197-376 43-242 (269)
18 COG3903 Predicted ATPase [Gene 99.2 1.2E-11 2.6E-16 119.3 5.8 282 196-482 13-317 (414)
19 COG2256 MGS1 ATPase related to 99.2 7.4E-10 1.6E-14 106.3 14.4 150 194-366 45-206 (436)
20 PRK06893 DNA replication initi 99.1 3.3E-09 7E-14 99.0 16.6 155 196-376 38-207 (229)
21 PRK07003 DNA polymerase III su 99.0 4.7E-08 1E-12 102.5 21.2 179 170-372 12-221 (830)
22 PRK13342 recombination factor 99.0 1.1E-07 2.4E-12 96.8 22.9 180 171-375 9-199 (413)
23 TIGR03420 DnaA_homol_Hda DnaA 99.0 4E-08 8.6E-13 91.8 18.0 175 174-376 15-205 (226)
24 PLN03025 replication factor C 98.9 5.9E-08 1.3E-12 95.4 18.9 187 167-369 6-197 (319)
25 PRK04195 replication factor C 98.9 4.7E-08 1E-12 101.5 18.8 191 165-376 5-206 (482)
26 PRK12402 replication factor C 98.9 6E-08 1.3E-12 96.5 18.0 198 169-372 10-226 (337)
27 PRK00440 rfc replication facto 98.9 7.9E-08 1.7E-12 94.8 18.7 188 167-370 10-201 (319)
28 PTZ00112 origin recognition co 98.9 7.8E-08 1.7E-12 101.5 19.1 275 171-460 752-1086(1164)
29 PF05496 RuvB_N: Holliday junc 98.9 2.4E-08 5.1E-13 89.9 13.0 180 171-377 21-226 (233)
30 PRK07471 DNA polymerase III su 98.9 5.1E-07 1.1E-11 89.6 22.9 197 169-373 14-239 (365)
31 PRK14963 DNA polymerase III su 98.9 2.2E-07 4.8E-12 96.0 21.0 188 171-369 11-214 (504)
32 COG1474 CDC6 Cdc6-related prot 98.9 1.2E-06 2.5E-11 86.9 25.2 277 170-460 13-334 (366)
33 PRK14961 DNA polymerase III su 98.9 1.9E-07 4.2E-12 93.3 19.7 175 171-369 13-217 (363)
34 PRK14960 DNA polymerase III su 98.9 2.9E-07 6.2E-12 95.7 20.9 176 170-369 11-216 (702)
35 PRK12323 DNA polymerase III su 98.9 3.1E-07 6.7E-12 95.3 20.9 191 171-370 13-223 (700)
36 PRK14949 DNA polymerase III su 98.8 1.3E-07 2.7E-12 101.3 18.2 185 171-370 13-218 (944)
37 PRK08903 DnaA regulatory inact 98.8 6E-08 1.3E-12 90.6 13.3 175 171-376 15-203 (227)
38 KOG2028 ATPase related to the 98.8 3.9E-08 8.5E-13 93.0 11.8 172 174-366 138-330 (554)
39 PTZ00202 tuzin; Provisional 98.8 7.7E-07 1.7E-11 87.5 21.1 176 155-341 237-434 (550)
40 PRK08727 hypothetical protein; 98.8 1.7E-07 3.7E-12 87.6 16.1 169 173-369 18-201 (233)
41 PRK14962 DNA polymerase III su 98.8 5.8E-07 1.2E-11 92.2 19.9 187 170-375 10-222 (472)
42 PRK05642 DNA replication initi 98.8 3E-07 6.4E-12 86.0 16.2 154 197-376 45-212 (234)
43 PRK08084 DNA replication initi 98.8 3.1E-07 6.8E-12 86.0 16.0 174 174-375 22-212 (235)
44 PRK05564 DNA polymerase III su 98.8 6.8E-07 1.5E-11 87.7 18.8 178 174-372 4-190 (313)
45 PRK14964 DNA polymerase III su 98.7 1.1E-06 2.4E-11 89.7 20.7 181 170-369 9-214 (491)
46 PF14516 AAA_35: AAA-like doma 98.7 7.9E-06 1.7E-10 80.5 26.2 199 170-378 7-245 (331)
47 PF13173 AAA_14: AAA domain 98.7 9.8E-08 2.1E-12 80.4 10.7 120 197-333 2-127 (128)
48 PF00308 Bac_DnaA: Bacterial d 98.7 3.3E-07 7.2E-12 84.6 15.2 183 176-375 11-211 (219)
49 TIGR02397 dnaX_nterm DNA polym 98.7 1.6E-06 3.4E-11 86.9 21.1 184 171-373 11-219 (355)
50 PRK08691 DNA polymerase III su 98.7 8.5E-07 1.8E-11 93.1 19.3 194 170-372 12-220 (709)
51 PRK09087 hypothetical protein; 98.7 5.6E-07 1.2E-11 83.5 16.3 143 197-376 44-199 (226)
52 PRK06645 DNA polymerase III su 98.7 1.5E-06 3.3E-11 89.4 20.9 189 170-369 17-226 (507)
53 TIGR01242 26Sp45 26S proteasom 98.7 1.3E-07 2.7E-12 94.9 12.4 174 172-366 120-328 (364)
54 PRK14956 DNA polymerase III su 98.7 3.1E-06 6.8E-11 85.6 21.9 188 170-368 14-218 (484)
55 PRK13341 recombination factor 98.7 2E-06 4.3E-11 92.4 21.6 174 171-370 25-215 (725)
56 PRK14958 DNA polymerase III su 98.7 1.7E-06 3.7E-11 89.7 20.4 182 170-370 12-218 (509)
57 PRK07940 DNA polymerase III su 98.7 1.1E-06 2.4E-11 87.9 18.2 172 174-372 5-213 (394)
58 TIGR00678 holB DNA polymerase 98.7 1.4E-06 3.1E-11 78.7 17.4 159 185-367 3-186 (188)
59 PRK07994 DNA polymerase III su 98.7 7.2E-07 1.6E-11 93.9 17.3 187 171-369 13-217 (647)
60 PRK09112 DNA polymerase III su 98.7 2E-06 4.3E-11 85.0 19.1 192 170-373 19-241 (351)
61 PRK14951 DNA polymerase III su 98.7 2.9E-06 6.3E-11 89.2 21.3 190 171-371 13-224 (618)
62 PRK14957 DNA polymerase III su 98.7 1.5E-06 3.3E-11 90.1 19.0 183 171-372 13-221 (546)
63 PRK14087 dnaA chromosomal repl 98.7 7.3E-07 1.6E-11 91.2 16.5 167 197-376 141-323 (450)
64 cd00009 AAA The AAA+ (ATPases 98.7 3.2E-07 7E-12 78.9 11.8 123 177-312 1-131 (151)
65 KOG3678 SARM protein (with ste 98.6 1.6E-07 3.5E-12 91.1 10.1 89 2-96 613-710 (832)
66 PRK05896 DNA polymerase III su 98.6 4.1E-06 8.9E-11 87.1 21.1 193 169-373 11-222 (605)
67 PRK14955 DNA polymerase III su 98.6 1.7E-06 3.8E-11 87.5 17.9 196 170-371 12-227 (397)
68 PRK07764 DNA polymerase III su 98.6 3.6E-06 7.9E-11 91.6 21.0 191 171-369 12-218 (824)
69 PRK09111 DNA polymerase III su 98.6 6.1E-06 1.3E-10 86.9 21.3 193 170-372 20-233 (598)
70 PRK14970 DNA polymerase III su 98.6 4.3E-06 9.4E-11 84.0 19.2 181 171-369 14-206 (367)
71 PRK14952 DNA polymerase III su 98.6 1.4E-05 2.9E-10 83.9 22.7 190 170-367 9-214 (584)
72 PRK03992 proteasome-activating 98.6 1.1E-06 2.4E-11 88.6 14.0 173 172-365 129-336 (389)
73 PRK14959 DNA polymerase III su 98.6 8.3E-06 1.8E-10 85.3 20.7 182 171-376 13-225 (624)
74 PRK14954 DNA polymerase III su 98.6 7.2E-06 1.6E-10 86.6 20.5 192 170-367 12-223 (620)
75 PHA02544 44 clamp loader, smal 98.5 8.9E-07 1.9E-11 87.2 12.9 158 162-339 9-171 (316)
76 PRK14969 DNA polymerase III su 98.5 2.3E-06 5E-11 89.3 16.4 173 171-367 13-215 (527)
77 PRK14953 DNA polymerase III su 98.5 2.9E-05 6.3E-10 80.1 24.0 193 171-373 13-221 (486)
78 PF13401 AAA_22: AAA domain; P 98.5 7.8E-07 1.7E-11 75.2 10.6 108 197-310 4-125 (131)
79 PRK14950 DNA polymerase III su 98.5 1E-05 2.3E-10 85.8 21.3 193 171-374 13-223 (585)
80 TIGR00362 DnaA chromosomal rep 98.5 3.8E-06 8.3E-11 85.5 17.4 182 176-374 113-312 (405)
81 PRK08451 DNA polymerase III su 98.5 2.3E-05 5E-10 81.0 22.8 185 170-372 10-218 (535)
82 PRK00149 dnaA chromosomal repl 98.5 3.6E-06 7.8E-11 86.8 17.2 181 176-373 125-323 (450)
83 PRK14088 dnaA chromosomal repl 98.5 4.8E-06 1E-10 85.2 17.8 163 197-375 130-308 (440)
84 TIGR02639 ClpA ATP-dependent C 98.5 2.1E-06 4.5E-11 93.7 16.0 193 153-364 164-383 (731)
85 COG2255 RuvB Holliday junction 98.5 7.6E-06 1.6E-10 75.6 16.9 259 171-465 23-316 (332)
86 PRK06620 hypothetical protein; 98.5 2.4E-06 5.2E-11 78.6 13.3 137 198-373 45-190 (214)
87 TIGR03345 VI_ClpV1 type VI sec 98.5 3.5E-06 7.5E-11 92.8 16.5 194 153-366 169-390 (852)
88 PRK06647 DNA polymerase III su 98.5 2E-05 4.4E-10 82.6 20.9 190 171-371 13-219 (563)
89 KOG0989 Replication factor C, 98.5 1.5E-05 3.3E-10 74.4 17.5 182 167-365 29-223 (346)
90 PRK12422 chromosomal replicati 98.4 1.7E-05 3.8E-10 80.9 19.3 175 175-366 113-307 (445)
91 CHL00095 clpC Clp protease ATP 98.4 3.9E-06 8.5E-11 92.7 15.1 175 174-364 179-379 (821)
92 PRK07133 DNA polymerase III su 98.4 8.3E-06 1.8E-10 86.6 16.6 190 170-371 14-219 (725)
93 TIGR02881 spore_V_K stage V sp 98.4 4.1E-06 8.9E-11 79.9 12.7 131 196-341 41-191 (261)
94 PRK14971 DNA polymerase III su 98.4 7.8E-05 1.7E-09 79.2 23.4 174 171-369 14-219 (614)
95 PRK06305 DNA polymerase III su 98.4 2.3E-05 5.1E-10 80.3 18.8 192 171-371 14-222 (451)
96 PRK14086 dnaA chromosomal repl 98.4 1.6E-05 3.4E-10 82.9 17.5 160 198-374 315-490 (617)
97 PRK05563 DNA polymerase III su 98.4 5E-05 1.1E-09 80.0 21.5 187 170-369 12-217 (559)
98 PRK14948 DNA polymerase III su 98.4 8.4E-05 1.8E-09 79.0 23.1 192 171-373 13-223 (620)
99 PF08937 DUF1863: MTH538 TIR-l 98.4 5.8E-07 1.2E-11 75.8 5.5 88 2-94 1-106 (130)
100 PF13191 AAA_16: AAA ATPase do 98.3 8.6E-07 1.9E-11 79.8 5.9 50 175-224 1-51 (185)
101 PRK05707 DNA polymerase III su 98.3 5E-05 1.1E-09 74.4 18.4 153 196-372 21-203 (328)
102 PRK07399 DNA polymerase III su 98.3 5.7E-05 1.2E-09 73.6 18.7 189 174-373 4-222 (314)
103 KOG2227 Pre-initiation complex 98.3 2E-05 4.4E-10 77.6 15.0 194 172-370 148-366 (529)
104 PRK14965 DNA polymerase III su 98.3 6.2E-05 1.3E-09 79.7 19.7 193 171-372 13-221 (576)
105 TIGR03346 chaperone_ClpB ATP-d 98.3 1.9E-05 4.2E-10 87.5 16.3 153 173-340 172-348 (852)
106 PRK10865 protein disaggregatio 98.3 2.2E-05 4.8E-10 86.8 16.3 170 153-341 160-354 (857)
107 TIGR03689 pup_AAA proteasome A 98.3 9.3E-06 2E-10 83.4 12.3 155 174-341 182-378 (512)
108 PTZ00454 26S protease regulato 98.2 2.4E-05 5.1E-10 78.7 14.7 174 172-366 143-351 (398)
109 TIGR02903 spore_lon_C ATP-depe 98.2 2.8E-05 6.1E-10 82.8 15.8 49 171-221 151-199 (615)
110 PRK11034 clpA ATP-dependent Cl 98.2 2.7E-05 5.9E-10 84.2 15.8 153 174-341 186-362 (758)
111 KOG0991 Replication factor C, 98.2 7.5E-06 1.6E-10 73.2 9.4 65 164-230 17-82 (333)
112 COG0593 DnaA ATPase involved i 98.2 6.3E-05 1.4E-09 74.6 15.9 155 196-366 112-280 (408)
113 PRK08116 hypothetical protein; 98.2 1.5E-05 3.3E-10 75.9 11.1 102 198-311 115-221 (268)
114 TIGR02880 cbbX_cfxQ probable R 98.2 4.5E-05 9.7E-10 73.5 14.5 128 199-341 60-208 (284)
115 CHL00195 ycf46 Ycf46; Provisio 98.2 0.00015 3.3E-09 74.6 18.7 174 174-366 228-429 (489)
116 COG3267 ExeA Type II secretory 98.1 0.00035 7.6E-09 64.0 18.2 195 175-375 29-248 (269)
117 PTZ00361 26 proteosome regulat 98.1 1.9E-05 4.2E-10 79.9 11.2 172 174-366 183-389 (438)
118 PF05673 DUF815: Protein of un 98.1 2.3E-05 5.1E-10 71.8 10.4 57 169-225 22-80 (249)
119 PRK08769 DNA polymerase III su 98.1 0.00028 6E-09 68.7 18.3 94 272-373 112-209 (319)
120 PF00004 AAA: ATPase family as 98.1 4.7E-05 1E-09 64.2 11.4 23 200-222 1-23 (132)
121 CHL00176 ftsH cell division pr 98.1 7.1E-05 1.5E-09 79.6 15.0 178 174-372 183-395 (638)
122 COG1222 RPT1 ATP-dependent 26S 98.1 6.7E-05 1.4E-09 71.7 13.1 171 175-366 152-357 (406)
123 PRK08181 transposase; Validate 98.1 1.7E-05 3.6E-10 75.3 9.2 99 198-311 107-209 (269)
124 PRK07952 DNA replication prote 98.0 6.9E-05 1.5E-09 70.0 12.6 74 197-283 99-172 (244)
125 TIGR01241 FtsH_fam ATP-depende 98.0 7.9E-05 1.7E-09 77.9 13.9 198 173-391 54-295 (495)
126 PF10443 RNA12: RNA12 protein; 98.0 0.0013 2.8E-08 65.2 21.0 189 179-378 1-284 (431)
127 PRK07993 DNA polymerase III su 98.0 0.00035 7.7E-09 68.7 16.6 160 183-368 11-200 (334)
128 PRK12377 putative replication 98.0 4.2E-05 9.2E-10 71.6 9.7 72 197-282 101-172 (248)
129 PF05621 TniB: Bacterial TniB 98.0 0.00045 9.8E-09 65.5 16.1 195 174-372 34-261 (302)
130 COG1373 Predicted ATPase (AAA+ 97.9 0.0002 4.4E-09 72.3 14.6 163 181-372 24-192 (398)
131 CHL00181 cbbX CbbX; Provisiona 97.9 0.00039 8.4E-09 67.0 15.7 130 198-342 60-210 (287)
132 TIGR00602 rad24 checkpoint pro 97.9 6.3E-05 1.4E-09 79.4 11.0 57 166-222 76-135 (637)
133 PRK08058 DNA polymerase III su 97.9 0.00045 9.7E-09 68.1 16.3 145 175-340 6-181 (329)
134 PRK06871 DNA polymerase III su 97.9 0.00069 1.5E-08 66.0 17.2 173 184-368 12-199 (325)
135 PRK09376 rho transcription ter 97.9 2.9E-05 6.2E-10 76.3 7.4 96 186-284 159-267 (416)
136 KOG2543 Origin recognition com 97.9 0.00025 5.5E-09 68.4 13.4 158 173-340 5-192 (438)
137 PF08357 SEFIR: SEFIR domain; 97.9 1.5E-05 3.2E-10 69.2 4.7 64 3-66 2-70 (150)
138 cd01128 rho_factor Transcripti 97.9 4.1E-05 9E-10 71.8 7.8 88 196-285 15-115 (249)
139 PF01695 IstB_IS21: IstB-like 97.9 2E-05 4.4E-10 70.2 5.4 72 197-283 47-118 (178)
140 PRK09183 transposase/IS protei 97.9 3.3E-05 7.2E-10 73.2 7.2 99 198-311 103-206 (259)
141 PRK06090 DNA polymerase III su 97.9 0.0012 2.6E-08 64.2 17.7 160 184-372 13-201 (319)
142 COG2812 DnaX DNA polymerase II 97.8 0.00047 1E-08 70.6 15.4 189 171-366 13-214 (515)
143 PRK06526 transposase; Provisio 97.8 3.1E-05 6.7E-10 73.0 6.2 99 197-311 98-201 (254)
144 PRK06921 hypothetical protein; 97.8 5.3E-05 1.2E-09 72.1 7.3 36 197-232 117-153 (266)
145 TIGR01243 CDC48 AAA family ATP 97.8 0.00033 7.2E-09 76.8 14.4 172 174-366 453-657 (733)
146 smart00382 AAA ATPases associa 97.8 4.9E-05 1.1E-09 64.5 6.3 34 198-231 3-36 (148)
147 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00031 6.8E-09 71.5 12.5 171 174-365 190-395 (802)
148 PRK10536 hypothetical protein; 97.8 0.00014 3.1E-09 67.5 9.4 132 173-311 54-213 (262)
149 TIGR02640 gas_vesic_GvpN gas v 97.8 0.00052 1.1E-08 65.4 13.4 24 198-221 22-45 (262)
150 PLN00020 ribulose bisphosphate 97.8 0.0013 2.9E-08 64.0 15.9 151 195-367 146-333 (413)
151 TIGR02639 ClpA ATP-dependent C 97.7 0.0017 3.6E-08 71.2 18.7 115 173-295 453-577 (731)
152 TIGR01243 CDC48 AAA family ATP 97.7 0.0004 8.7E-09 76.2 13.9 171 174-366 178-381 (733)
153 TIGR00767 rho transcription te 97.7 0.00012 2.5E-09 72.4 8.4 88 196-285 167-267 (415)
154 KOG0744 AAA+-type ATPase [Post 97.7 0.00011 2.3E-09 69.2 7.6 36 197-232 177-216 (423)
155 PRK08939 primosomal protein Dn 97.7 0.00026 5.6E-09 68.7 10.6 100 197-311 156-261 (306)
156 PRK04132 replication factor C 97.7 0.0018 3.9E-08 70.6 17.9 156 202-372 569-731 (846)
157 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0019 4.2E-08 71.9 18.4 130 173-310 564-717 (852)
158 COG0470 HolB ATPase involved i 97.7 0.0012 2.7E-08 65.0 15.1 149 175-335 2-175 (325)
159 KOG0741 AAA+-type ATPase [Post 97.7 0.00095 2.1E-08 67.0 13.6 129 195-340 536-685 (744)
160 KOG1514 Origin recognition com 97.6 0.0015 3.2E-08 67.9 15.0 201 172-375 394-624 (767)
161 COG0542 clpA ATP-binding subun 97.6 0.00047 1E-08 73.6 11.7 151 174-339 170-344 (786)
162 KOG0735 AAA+-type ATPase [Post 97.6 0.00099 2.1E-08 69.2 13.4 161 197-372 431-616 (952)
163 COG1223 Predicted ATPase (AAA+ 97.6 0.00045 9.7E-09 63.2 9.8 171 174-365 121-318 (368)
164 PRK10865 protein disaggregatio 97.6 0.00068 1.5E-08 75.2 13.4 114 173-295 567-694 (857)
165 COG1484 DnaC DNA replication p 97.6 0.00035 7.7E-09 65.9 9.7 73 196-283 104-177 (254)
166 PRK06964 DNA polymerase III su 97.6 0.0091 2E-07 58.7 19.7 90 273-372 132-225 (342)
167 PF13177 DNA_pol3_delta2: DNA 97.6 0.0016 3.4E-08 57.2 13.0 138 178-329 1-162 (162)
168 PRK06835 DNA replication prote 97.6 0.00041 8.8E-09 67.9 10.1 101 198-311 184-289 (329)
169 PRK13531 regulatory ATPase Rav 97.6 0.0007 1.5E-08 68.7 11.6 46 174-223 20-65 (498)
170 KOG0731 AAA+-type ATPase conta 97.6 0.0014 2.9E-08 69.7 14.1 178 172-369 309-521 (774)
171 PRK11331 5-methylcytosine-spec 97.6 0.00017 3.6E-09 72.5 7.0 55 174-232 175-231 (459)
172 KOG0730 AAA+-type ATPase [Post 97.6 0.00067 1.5E-08 69.9 11.3 151 195-366 466-637 (693)
173 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0014 3E-08 67.0 13.2 128 197-342 545-693 (802)
174 cd01131 PilT Pilus retraction 97.5 0.0003 6.5E-09 64.0 8.0 108 198-313 2-111 (198)
175 PF02562 PhoH: PhoH-like prote 97.5 0.001 2.2E-08 60.1 11.0 126 179-311 5-156 (205)
176 KOG1970 Checkpoint RAD17-RFC c 97.5 0.0021 4.5E-08 65.0 13.8 42 180-221 88-134 (634)
177 COG2607 Predicted ATPase (AAA+ 97.5 0.0011 2.3E-08 60.1 10.5 58 170-227 56-115 (287)
178 TIGR01817 nifA Nif-specific re 97.4 0.0042 9.1E-08 65.8 15.9 51 171-221 193-243 (534)
179 PRK11608 pspF phage shock prot 97.4 0.0062 1.3E-07 60.0 16.0 47 174-220 6-52 (326)
180 PRK08699 DNA polymerase III su 97.4 0.0037 8E-08 61.3 14.3 86 273-368 113-202 (325)
181 TIGR02974 phageshock_pspF psp 97.4 0.004 8.7E-08 61.3 14.3 45 176-220 1-45 (329)
182 PF03215 Rad17: Rad17 cell cyc 97.4 0.0016 3.5E-08 67.6 12.0 61 169-231 14-77 (519)
183 cd01120 RecA-like_NTPases RecA 97.4 0.0011 2.4E-08 57.9 9.5 33 200-232 2-34 (165)
184 TIGR00763 lon ATP-dependent pr 97.4 0.001 2.3E-08 73.3 11.2 52 174-225 320-375 (775)
185 CHL00095 clpC Clp protease ATP 97.4 0.00097 2.1E-08 74.0 10.9 116 173-296 508-636 (821)
186 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00045 9.7E-09 76.4 7.9 51 173-223 565-622 (852)
187 PRK10787 DNA-binding ATP-depen 97.4 0.0031 6.8E-08 69.1 14.3 159 174-341 322-506 (784)
188 PRK05022 anaerobic nitric oxid 97.4 0.0083 1.8E-07 63.0 17.0 51 172-222 185-235 (509)
189 COG0466 Lon ATP-dependent Lon 97.4 0.00094 2E-08 69.6 9.6 159 174-341 323-508 (782)
190 TIGR02902 spore_lonB ATP-depen 97.3 0.0022 4.9E-08 67.3 12.5 47 172-220 63-109 (531)
191 PF14532 Sigma54_activ_2: Sigm 97.3 0.00028 6.1E-09 60.2 4.8 45 177-221 1-45 (138)
192 PRK04296 thymidine kinase; Pro 97.3 0.00028 6.1E-09 63.7 5.0 106 198-311 3-116 (190)
193 COG0542 clpA ATP-binding subun 97.3 0.0017 3.6E-08 69.5 11.4 115 173-296 490-618 (786)
194 COG1066 Sms Predicted ATP-depe 97.3 0.0014 3E-08 64.2 9.7 93 182-282 78-177 (456)
195 KOG2228 Origin recognition com 97.3 0.0032 7E-08 59.9 11.8 169 172-341 22-219 (408)
196 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00029 6.3E-09 68.9 4.5 50 174-223 51-104 (361)
197 PRK15429 formate hydrogenlyase 97.3 0.013 2.7E-07 64.1 17.7 48 174-221 376-423 (686)
198 PF13207 AAA_17: AAA domain; P 97.2 0.00022 4.8E-09 59.2 3.1 23 199-221 1-23 (121)
199 PRK09361 radB DNA repair and r 97.2 0.00093 2E-08 62.2 7.5 48 185-232 11-58 (225)
200 TIGR02237 recomb_radB DNA repa 97.2 0.0016 3.5E-08 59.8 8.9 44 189-232 4-47 (209)
201 cd01121 Sms Sms (bacterial rad 97.2 0.0018 3.9E-08 64.6 9.7 93 183-282 68-167 (372)
202 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0026 5.7E-08 55.0 9.4 113 198-312 3-139 (159)
203 KOG2004 Mitochondrial ATP-depe 97.2 0.0019 4.1E-08 67.3 9.8 156 174-341 411-596 (906)
204 KOG0734 AAA+-type ATPase conta 97.2 0.0036 7.7E-08 63.1 11.3 150 174-341 304-484 (752)
205 PRK12608 transcription termina 97.2 0.0021 4.5E-08 63.3 9.3 98 184-284 121-231 (380)
206 TIGR01650 PD_CobS cobaltochela 97.2 0.0069 1.5E-07 58.7 12.8 48 174-225 45-92 (327)
207 PRK05800 cobU adenosylcobinami 97.2 0.0084 1.8E-07 52.9 12.3 76 199-282 3-85 (170)
208 COG1618 Predicted nucleotide k 97.2 0.00042 9E-09 58.9 3.7 31 198-228 6-37 (179)
209 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0016 3.5E-08 61.5 8.0 88 196-285 68-175 (274)
210 PRK10733 hflB ATP-dependent me 97.1 0.0061 1.3E-07 65.7 13.5 146 198-364 186-355 (644)
211 cd01394 radB RadB. The archaea 97.1 0.002 4.4E-08 59.6 8.7 49 184-232 6-54 (218)
212 cd00544 CobU Adenosylcobinamid 97.1 0.015 3.4E-07 51.1 13.7 75 200-282 2-82 (169)
213 PRK06696 uridine kinase; Valid 97.1 0.00071 1.5E-08 62.8 5.5 46 179-224 3-49 (223)
214 PRK11034 clpA ATP-dependent Cl 97.1 0.0018 4E-08 70.3 9.3 49 174-222 458-513 (758)
215 PRK07667 uridine kinase; Provi 97.1 0.001 2.2E-08 60.3 6.2 42 183-224 3-44 (193)
216 cd01393 recA_like RecA is a b 97.1 0.0031 6.7E-08 58.7 9.6 48 185-232 7-60 (226)
217 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0051 1.1E-07 57.7 11.0 49 184-232 8-56 (237)
218 PHA00729 NTP-binding motif con 97.1 0.0021 4.6E-08 58.8 8.0 27 196-222 16-42 (226)
219 KOG0739 AAA+-type ATPase [Post 97.1 0.01 2.3E-07 55.5 12.4 172 174-366 133-335 (439)
220 PRK06067 flagellar accessory p 97.1 0.0029 6.3E-08 59.3 9.0 49 184-232 12-60 (234)
221 PF04665 Pox_A32: Poxvirus A32 97.1 0.0013 2.8E-08 60.9 6.3 34 199-232 15-48 (241)
222 PRK08118 topology modulation p 97.0 0.00048 1E-08 60.7 3.4 32 199-230 3-37 (167)
223 KOG0727 26S proteasome regulat 97.0 0.0057 1.2E-07 55.8 9.9 51 175-225 156-217 (408)
224 TIGR01420 pilT_fam pilus retra 97.0 0.0012 2.6E-08 65.5 6.3 108 197-312 122-231 (343)
225 COG0464 SpoVK ATPases of the A 97.0 0.0064 1.4E-07 63.8 11.9 150 196-364 275-445 (494)
226 TIGR02012 tigrfam_recA protein 97.0 0.0042 9.1E-08 60.3 9.6 49 184-232 41-90 (321)
227 PF01583 APS_kinase: Adenylyls 97.0 0.001 2.2E-08 57.4 4.6 36 197-232 2-37 (156)
228 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0041 8.9E-08 58.3 9.3 48 185-232 7-60 (235)
229 PRK04328 hypothetical protein; 97.0 0.0068 1.5E-07 57.3 10.5 48 185-232 11-58 (249)
230 PRK11889 flhF flagellar biosyn 96.9 0.011 2.3E-07 58.6 11.8 36 196-231 240-275 (436)
231 PRK06762 hypothetical protein; 96.9 0.0025 5.4E-08 56.1 7.0 25 197-221 2-26 (166)
232 PF00448 SRP54: SRP54-type pro 96.9 0.0034 7.4E-08 56.8 7.9 35 197-231 1-35 (196)
233 PTZ00494 tuzin-like protein; P 96.9 0.11 2.4E-06 51.9 18.6 176 155-341 346-544 (664)
234 PRK09354 recA recombinase A; P 96.9 0.0044 9.5E-08 60.7 9.1 49 184-232 46-95 (349)
235 COG4088 Predicted nucleotide k 96.9 0.0024 5.1E-08 56.6 6.4 28 198-225 2-29 (261)
236 PRK11823 DNA repair protein Ra 96.9 0.0048 1E-07 63.4 9.8 94 183-283 66-166 (446)
237 TIGR00416 sms DNA repair prote 96.9 0.0045 9.8E-08 63.6 9.6 94 182-282 79-179 (454)
238 PF13604 AAA_30: AAA domain; P 96.9 0.0034 7.4E-08 56.9 7.8 113 183-311 7-131 (196)
239 PRK07132 DNA polymerase III su 96.9 0.18 3.9E-06 48.8 19.9 166 184-372 6-185 (299)
240 PRK00771 signal recognition pa 96.9 0.025 5.4E-07 57.6 14.4 29 196-224 94-122 (437)
241 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0032 6.8E-08 60.0 7.5 101 182-294 68-170 (264)
242 KOG0728 26S proteasome regulat 96.8 0.026 5.6E-07 51.6 12.5 145 179-341 152-331 (404)
243 KOG1969 DNA replication checkp 96.8 0.0021 4.5E-08 67.1 6.1 73 195-284 324-398 (877)
244 KOG0735 AAA+-type ATPase [Post 96.8 0.021 4.6E-07 59.7 13.2 151 197-368 701-872 (952)
245 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.01 2.2E-07 50.9 9.5 105 196-316 25-132 (144)
246 KOG0736 Peroxisome assembly fa 96.8 0.021 4.5E-07 60.3 13.0 91 176-284 674-775 (953)
247 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.0079 1.7E-07 69.7 10.7 27 195-221 1628-1654(2281)
248 PF03308 ArgK: ArgK protein; 96.8 0.0036 7.8E-08 58.0 6.6 43 182-224 14-56 (266)
249 PF10236 DAP3: Mitochondrial r 96.7 0.04 8.7E-07 53.7 14.2 48 322-369 258-306 (309)
250 PF13238 AAA_18: AAA domain; P 96.7 0.001 2.3E-08 55.6 2.8 22 200-221 1-22 (129)
251 PRK05541 adenylylsulfate kinas 96.7 0.0018 3.8E-08 57.8 4.4 37 196-232 6-42 (176)
252 PRK14974 cell division protein 96.7 0.011 2.3E-07 58.1 10.1 29 196-224 139-167 (336)
253 PF13671 AAA_33: AAA domain; P 96.7 0.0075 1.6E-07 51.5 8.0 24 199-222 1-24 (143)
254 PRK15455 PrkA family serine pr 96.7 0.0017 3.8E-08 66.9 4.4 50 174-223 76-129 (644)
255 COG0465 HflB ATP-dependent Zn 96.7 0.022 4.7E-07 59.6 12.4 175 172-367 148-356 (596)
256 KOG0729 26S proteasome regulat 96.7 0.01 2.2E-07 54.7 8.8 90 176-283 179-280 (435)
257 cd03214 ABC_Iron-Siderophores_ 96.7 0.0073 1.6E-07 54.0 7.8 117 196-315 24-162 (180)
258 PRK11388 DNA-binding transcrip 96.7 0.056 1.2E-06 58.6 16.1 49 173-221 324-372 (638)
259 cd01858 NGP_1 NGP-1. Autoanti 96.7 0.012 2.5E-07 51.4 8.9 23 197-219 102-124 (157)
260 PRK10820 DNA-binding transcrip 96.6 0.059 1.3E-06 56.7 15.6 50 171-220 201-250 (520)
261 KOG0743 AAA+-type ATPase [Post 96.6 0.036 7.8E-07 55.2 12.7 150 197-376 235-413 (457)
262 cd00983 recA RecA is a bacter 96.6 0.0079 1.7E-07 58.5 8.1 49 184-232 41-90 (325)
263 PRK14722 flhF flagellar biosyn 96.6 0.027 5.7E-07 56.0 11.9 83 196-282 136-224 (374)
264 cd03228 ABCC_MRP_Like The MRP 96.6 0.011 2.5E-07 52.3 8.6 121 196-325 27-167 (171)
265 PF00485 PRK: Phosphoribulokin 96.6 0.0017 3.6E-08 58.9 3.3 26 199-224 1-26 (194)
266 COG4133 CcmA ABC-type transpor 96.6 0.012 2.6E-07 51.6 8.2 28 197-224 28-55 (209)
267 PF07726 AAA_3: ATPase family 96.6 0.0017 3.7E-08 53.4 2.8 28 200-227 2-29 (131)
268 cd02027 APSK Adenosine 5'-phos 96.6 0.013 2.9E-07 50.5 8.6 24 199-222 1-24 (149)
269 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0058 1.3E-07 57.8 6.8 26 199-224 1-26 (249)
270 COG3854 SpoIIIAA ncharacterize 96.5 0.013 2.8E-07 53.0 8.3 107 200-311 140-253 (308)
271 KOG2035 Replication factor C, 96.5 0.062 1.3E-06 50.1 12.8 208 174-392 13-259 (351)
272 PRK07261 topology modulation p 96.5 0.0017 3.7E-08 57.5 2.8 23 199-221 2-24 (171)
273 PRK12724 flagellar biosynthesi 96.5 0.024 5.1E-07 56.9 11.0 25 197-221 223-247 (432)
274 PF00910 RNA_helicase: RNA hel 96.5 0.0013 2.9E-08 53.2 1.9 25 200-224 1-25 (107)
275 cd02019 NK Nucleoside/nucleoti 96.5 0.002 4.3E-08 47.5 2.6 23 199-221 1-23 (69)
276 KOG0652 26S proteasome regulat 96.5 0.11 2.3E-06 48.0 13.9 48 175-222 172-230 (424)
277 PF08433 KTI12: Chromatin asso 96.5 0.0067 1.5E-07 57.7 6.7 35 198-232 2-36 (270)
278 COG1703 ArgK Putative periplas 96.5 0.0048 1E-07 58.0 5.4 43 184-226 38-80 (323)
279 cd03222 ABC_RNaseL_inhibitor T 96.5 0.019 4E-07 51.1 9.0 114 197-326 25-146 (177)
280 PTZ00301 uridine kinase; Provi 96.5 0.0024 5.1E-08 58.4 3.3 28 197-224 3-30 (210)
281 cd03223 ABCD_peroxisomal_ALDP 96.4 0.03 6.5E-07 49.3 10.2 123 196-325 26-160 (166)
282 PRK08233 hypothetical protein; 96.4 0.0024 5.3E-08 57.1 3.3 26 197-222 3-28 (182)
283 cd03247 ABCC_cytochrome_bd The 96.4 0.029 6.2E-07 50.0 10.2 124 196-325 27-169 (178)
284 TIGR00708 cobA cob(I)alamin ad 96.4 0.016 3.6E-07 50.8 8.2 111 198-312 6-141 (173)
285 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.013 2.7E-07 58.3 8.4 102 196-311 61-167 (362)
286 COG4608 AppF ABC-type oligopep 96.4 0.0095 2.1E-07 55.6 6.9 119 196-317 38-176 (268)
287 TIGR00064 ftsY signal recognit 96.4 0.0072 1.6E-07 57.7 6.3 37 195-231 70-106 (272)
288 KOG0651 26S proteasome regulat 96.4 0.012 2.7E-07 55.4 7.5 30 196-225 165-194 (388)
289 PF07728 AAA_5: AAA domain (dy 96.4 0.0031 6.8E-08 53.7 3.4 22 200-221 2-23 (139)
290 PF10137 TIR-like: Predicted n 96.4 0.009 2E-07 49.4 5.9 59 3-64 1-60 (125)
291 cd03238 ABC_UvrA The excision 96.4 0.017 3.6E-07 51.3 8.1 23 196-218 20-42 (176)
292 COG5635 Predicted NTPase (NACH 96.4 0.05 1.1E-06 60.6 13.6 193 198-392 223-448 (824)
293 COG0529 CysC Adenylylsulfate k 96.4 0.0049 1.1E-07 53.3 4.4 36 196-231 22-57 (197)
294 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0057 1.2E-07 58.1 5.4 38 195-232 34-71 (259)
295 KOG3928 Mitochondrial ribosome 96.3 0.089 1.9E-06 51.8 13.4 58 319-376 402-460 (461)
296 PRK05480 uridine/cytidine kina 96.3 0.0033 7.2E-08 57.7 3.6 27 195-221 4-30 (209)
297 PRK10923 glnG nitrogen regulat 96.3 0.087 1.9E-06 54.9 14.6 48 174-221 138-185 (469)
298 PRK09270 nucleoside triphospha 96.3 0.0049 1.1E-07 57.5 4.8 31 194-224 30-60 (229)
299 cd03216 ABC_Carb_Monos_I This 96.3 0.015 3.2E-07 51.1 7.6 116 196-315 25-146 (163)
300 PRK12723 flagellar biosynthesi 96.3 0.011 2.4E-07 59.2 7.4 27 196-222 173-199 (388)
301 PRK00131 aroK shikimate kinase 96.3 0.0033 7.1E-08 55.8 3.3 25 197-221 4-28 (175)
302 COG2884 FtsE Predicted ATPase 96.3 0.038 8.2E-07 48.6 9.6 50 266-317 148-203 (223)
303 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0085 1.8E-07 59.5 6.5 94 197-294 134-233 (358)
304 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0051 1.1E-07 51.5 4.1 40 182-221 7-46 (133)
305 cd03246 ABCC_Protease_Secretio 96.3 0.018 3.8E-07 51.2 7.9 122 196-325 27-168 (173)
306 PRK04040 adenylate kinase; Pro 96.3 0.004 8.7E-08 56.0 3.7 25 198-222 3-27 (188)
307 PRK03839 putative kinase; Prov 96.3 0.0033 7.1E-08 56.3 3.1 24 199-222 2-25 (180)
308 PRK15115 response regulator Gl 96.3 0.16 3.6E-06 52.4 16.1 48 174-221 134-181 (444)
309 COG0488 Uup ATPase components 96.2 0.2 4.3E-06 52.4 16.3 59 266-327 450-511 (530)
310 TIGR02858 spore_III_AA stage I 96.2 0.019 4.1E-07 54.6 8.2 111 196-313 110-231 (270)
311 PF00437 T2SE: Type II/IV secr 96.2 0.0023 5.1E-08 61.3 2.0 126 175-311 105-232 (270)
312 PRK05703 flhF flagellar biosyn 96.2 0.031 6.7E-07 57.0 9.9 26 197-222 221-246 (424)
313 PF06068 TIP49: TIP49 C-termin 96.2 0.0077 1.7E-07 58.7 5.2 57 172-228 22-81 (398)
314 PRK07276 DNA polymerase III su 96.2 0.5 1.1E-05 45.4 17.5 67 272-339 103-173 (290)
315 KOG1051 Chaperone HSP104 and r 96.2 0.05 1.1E-06 59.4 11.8 99 174-284 562-671 (898)
316 cd00227 CPT Chloramphenicol (C 96.2 0.0045 9.7E-08 55.1 3.4 25 198-222 3-27 (175)
317 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.044 9.6E-07 51.6 10.3 25 197-221 25-49 (246)
318 PRK05917 DNA polymerase III su 96.1 0.18 3.9E-06 48.3 14.3 126 184-328 7-154 (290)
319 cd01130 VirB11-like_ATPase Typ 96.1 0.0045 9.8E-08 55.7 3.4 87 197-291 25-118 (186)
320 COG0467 RAD55 RecA-superfamily 96.1 0.0085 1.8E-07 57.1 5.4 44 189-232 15-58 (260)
321 TIGR00235 udk uridine kinase. 96.1 0.005 1.1E-07 56.5 3.6 28 195-222 4-31 (207)
322 COG1224 TIP49 DNA helicase TIP 96.1 0.0095 2.1E-07 57.3 5.5 54 171-224 36-92 (450)
323 COG0572 Udk Uridine kinase [Nu 96.1 0.0063 1.4E-07 55.1 4.1 30 195-224 6-35 (218)
324 PRK00625 shikimate kinase; Pro 96.1 0.0042 9.2E-08 55.0 3.0 24 199-222 2-25 (173)
325 PRK00889 adenylylsulfate kinas 96.1 0.0075 1.6E-07 53.7 4.6 27 197-223 4-30 (175)
326 PRK06547 hypothetical protein; 96.1 0.0051 1.1E-07 54.4 3.5 27 195-221 13-39 (172)
327 PRK13539 cytochrome c biogenes 96.1 0.029 6.3E-07 51.4 8.7 25 196-220 27-51 (207)
328 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.024 5.3E-07 52.1 8.0 23 197-219 29-51 (213)
329 PF13245 AAA_19: Part of AAA d 96.1 0.011 2.5E-07 44.3 4.8 24 197-220 10-33 (76)
330 cd03229 ABC_Class3 This class 96.1 0.025 5.5E-07 50.4 7.8 26 196-221 25-50 (178)
331 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0048 1E-07 55.5 3.2 25 197-221 3-27 (188)
332 cd01122 GP4d_helicase GP4d_hel 96.1 0.049 1.1E-06 52.2 10.3 37 196-232 29-66 (271)
333 cd03230 ABC_DR_subfamily_A Thi 96.1 0.031 6.7E-07 49.6 8.3 26 196-221 25-50 (173)
334 PF00158 Sigma54_activat: Sigm 96.0 0.0068 1.5E-07 53.4 3.8 45 176-220 1-45 (168)
335 TIGR03499 FlhF flagellar biosy 96.0 0.0074 1.6E-07 58.1 4.4 29 196-224 193-221 (282)
336 TIGR02525 plasmid_TraJ plasmid 96.0 0.014 2.9E-07 58.2 6.3 106 198-309 150-258 (372)
337 PRK12726 flagellar biosynthesi 96.0 0.044 9.6E-07 54.2 9.6 37 196-232 205-241 (407)
338 COG1102 Cmk Cytidylate kinase 96.0 0.0052 1.1E-07 52.3 2.8 24 199-222 2-25 (179)
339 COG1875 NYN ribonuclease and A 96.0 0.12 2.6E-06 50.1 12.3 41 176-218 226-266 (436)
340 COG2274 SunT ABC-type bacterio 96.0 0.018 3.8E-07 62.3 7.5 25 196-220 498-522 (709)
341 cd01125 repA Hexameric Replica 96.0 0.064 1.4E-06 50.3 10.6 23 199-221 3-25 (239)
342 cd02028 UMPK_like Uridine mono 96.0 0.0072 1.6E-07 53.9 3.9 25 199-223 1-25 (179)
343 TIGR02788 VirB11 P-type DNA tr 96.0 0.0085 1.8E-07 58.5 4.7 108 196-311 143-253 (308)
344 cd03115 SRP The signal recogni 96.0 0.02 4.4E-07 50.7 6.8 26 199-224 2-27 (173)
345 PRK05986 cob(I)alamin adenolsy 96.0 0.022 4.8E-07 50.7 6.8 114 197-311 22-158 (191)
346 cd03263 ABC_subfamily_A The AB 96.0 0.061 1.3E-06 49.7 10.2 25 196-220 27-51 (220)
347 PF03266 NTPase_1: NTPase; In 96.0 0.0077 1.7E-07 53.0 3.9 24 200-223 2-25 (168)
348 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.0046 1E-07 55.4 2.5 23 199-221 1-23 (183)
349 COG0003 ArsA Predicted ATPase 95.9 0.012 2.5E-07 57.3 5.2 49 197-249 2-50 (322)
350 PRK03846 adenylylsulfate kinas 95.9 0.011 2.3E-07 53.8 4.8 37 195-231 22-58 (198)
351 TIGR02238 recomb_DMC1 meiotic 95.9 0.04 8.6E-07 53.8 9.0 49 184-232 83-137 (313)
352 PRK13947 shikimate kinase; Pro 95.9 0.0058 1.3E-07 54.1 3.0 25 199-223 3-27 (171)
353 PF13086 AAA_11: AAA domain; P 95.9 0.011 2.3E-07 55.0 4.9 36 182-221 6-41 (236)
354 TIGR02533 type_II_gspE general 95.9 0.014 3.1E-07 60.4 6.2 121 177-310 224-345 (486)
355 PHA02244 ATPase-like protein 95.9 0.018 3.9E-07 56.6 6.4 47 172-222 94-144 (383)
356 TIGR00390 hslU ATP-dependent p 95.9 0.02 4.3E-07 57.3 6.8 51 174-224 12-74 (441)
357 COG0468 RecA RecA/RadA recombi 95.9 0.028 6.2E-07 53.4 7.6 50 186-235 49-98 (279)
358 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.015 3.3E-07 54.2 5.8 49 184-232 7-55 (229)
359 cd01124 KaiC KaiC is a circadi 95.9 0.0082 1.8E-07 53.9 3.8 33 200-232 2-34 (187)
360 TIGR01277 thiQ thiamine ABC tr 95.9 0.071 1.5E-06 49.0 10.1 26 196-221 23-48 (213)
361 TIGR03575 selen_PSTK_euk L-ser 95.9 0.081 1.8E-06 51.9 10.8 23 200-222 2-24 (340)
362 TIGR02782 TrbB_P P-type conjug 95.9 0.006 1.3E-07 59.1 3.0 86 198-291 133-222 (299)
363 PF08423 Rad51: Rad51; InterP 95.9 0.045 9.8E-07 51.8 8.9 49 184-232 25-79 (256)
364 PRK13765 ATP-dependent proteas 95.8 0.012 2.5E-07 62.8 5.3 60 170-233 27-87 (637)
365 PRK05973 replicative DNA helic 95.8 0.014 3E-07 54.3 5.1 37 196-232 63-99 (237)
366 PF02374 ArsA_ATPase: Anion-tr 95.8 0.01 2.3E-07 57.6 4.5 35 198-232 2-36 (305)
367 cd03232 ABC_PDR_domain2 The pl 95.8 0.057 1.2E-06 48.8 9.0 25 196-220 32-56 (192)
368 PRK05439 pantothenate kinase; 95.8 0.01 2.2E-07 57.4 4.3 30 194-223 83-112 (311)
369 TIGR00455 apsK adenylylsulfate 95.8 0.043 9.3E-07 49.2 8.2 28 196-223 17-44 (184)
370 cd03259 ABC_Carb_Solutes_like 95.8 0.059 1.3E-06 49.5 9.3 25 196-220 25-49 (213)
371 TIGR01069 mutS2 MutS2 family p 95.8 0.032 7E-07 61.2 8.6 24 197-220 322-345 (771)
372 cd02021 GntK Gluconate kinase 95.8 0.006 1.3E-07 52.7 2.4 23 199-221 1-23 (150)
373 PF07724 AAA_2: AAA domain (Cd 95.8 0.011 2.5E-07 52.2 4.2 42 197-239 3-45 (171)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 95.8 0.068 1.5E-06 45.6 8.9 51 46-98 3-53 (141)
375 PRK11248 tauB taurine transpor 95.8 0.071 1.5E-06 50.6 9.9 26 196-221 26-51 (255)
376 TIGR03600 phage_DnaB phage rep 95.8 0.19 4E-06 51.6 13.7 72 176-254 174-246 (421)
377 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.02 4.4E-07 49.8 5.7 123 197-325 25-153 (157)
378 cd02024 NRK1 Nicotinamide ribo 95.8 0.0062 1.4E-07 54.5 2.5 23 199-221 1-23 (187)
379 PRK09435 membrane ATPase/prote 95.8 0.019 4.1E-07 56.2 6.0 41 184-224 43-83 (332)
380 PF00625 Guanylate_kin: Guanyl 95.8 0.012 2.6E-07 52.8 4.3 36 197-232 2-37 (183)
381 TIGR02915 PEP_resp_reg putativ 95.8 0.23 4.9E-06 51.4 14.4 47 174-220 139-185 (445)
382 PRK06217 hypothetical protein; 95.7 0.0071 1.5E-07 54.2 2.8 23 199-221 3-25 (183)
383 COG1936 Predicted nucleotide k 95.7 0.0071 1.5E-07 52.3 2.6 20 199-218 2-21 (180)
384 PLN03187 meiotic recombination 95.7 0.058 1.3E-06 53.1 9.3 49 184-232 113-167 (344)
385 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.024 5.3E-07 55.1 6.5 52 173-224 60-115 (358)
386 PRK15453 phosphoribulokinase; 95.7 0.014 3.1E-07 55.1 4.7 29 195-223 3-31 (290)
387 PRK10436 hypothetical protein; 95.7 0.026 5.7E-07 57.9 7.0 108 177-294 200-308 (462)
388 PRK10875 recD exonuclease V su 95.7 0.057 1.2E-06 57.5 9.7 26 197-222 167-192 (615)
389 cd02020 CMPK Cytidine monophos 95.7 0.0076 1.7E-07 51.7 2.7 23 199-221 1-23 (147)
390 PRK08506 replicative DNA helic 95.7 0.09 2E-06 54.5 11.0 72 176-254 172-243 (472)
391 TIGR02324 CP_lyasePhnL phospho 95.7 0.093 2E-06 48.6 10.2 26 196-221 33-58 (224)
392 cd00071 GMPK Guanosine monopho 95.7 0.0075 1.6E-07 51.2 2.5 25 200-224 2-26 (137)
393 PRK13543 cytochrome c biogenes 95.7 0.11 2.4E-06 47.8 10.6 25 196-220 36-60 (214)
394 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.045 9.6E-07 51.1 7.7 50 266-317 150-205 (254)
395 PRK12339 2-phosphoglycerate ki 95.7 0.0097 2.1E-07 53.9 3.3 25 197-221 3-27 (197)
396 PHA02774 E1; Provisional 95.7 0.037 8.1E-07 57.4 7.8 40 182-222 420-459 (613)
397 PF03205 MobB: Molybdopterin g 95.7 0.015 3.2E-07 49.6 4.2 35 198-232 1-36 (140)
398 COG0714 MoxR-like ATPases [Gen 95.6 0.015 3.4E-07 57.4 5.1 49 174-226 24-72 (329)
399 TIGR02322 phosphon_PhnN phosph 95.6 0.0089 1.9E-07 53.3 3.0 25 198-222 2-26 (179)
400 PTZ00035 Rad51 protein; Provis 95.6 0.093 2E-06 51.8 10.4 39 183-221 104-142 (337)
401 cd03215 ABC_Carb_Monos_II This 95.6 0.078 1.7E-06 47.4 9.2 26 196-221 25-50 (182)
402 COG2805 PilT Tfp pilus assembl 95.6 0.051 1.1E-06 51.3 8.0 95 196-294 124-219 (353)
403 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.053 1.1E-06 49.3 8.1 25 196-220 25-49 (200)
404 KOG0730 AAA+-type ATPase [Post 95.6 0.076 1.7E-06 55.3 9.9 172 175-366 185-386 (693)
405 cd03264 ABC_drug_resistance_li 95.6 0.06 1.3E-06 49.4 8.5 22 199-220 27-48 (211)
406 cd02023 UMPK Uridine monophosp 95.6 0.0075 1.6E-07 54.8 2.4 23 199-221 1-23 (198)
407 PRK05201 hslU ATP-dependent pr 95.6 0.015 3.2E-07 58.2 4.5 51 174-224 15-77 (443)
408 cd02025 PanK Pantothenate kina 95.6 0.0076 1.7E-07 55.7 2.5 24 199-222 1-24 (220)
409 PF06745 KaiC: KaiC; InterPro 95.6 0.013 2.8E-07 54.5 4.0 47 186-232 8-55 (226)
410 cd03213 ABCG_EPDR ABCG transpo 95.6 0.096 2.1E-06 47.4 9.5 26 196-221 34-59 (194)
411 TIGR03522 GldA_ABC_ATP gliding 95.5 0.1 2.2E-06 50.8 10.3 25 196-220 27-51 (301)
412 cd00464 SK Shikimate kinase (S 95.5 0.01 2.2E-07 51.3 3.0 22 200-221 2-23 (154)
413 TIGR02768 TraA_Ti Ti-type conj 95.5 0.073 1.6E-06 58.4 10.1 99 198-309 369-475 (744)
414 cd03233 ABC_PDR_domain1 The pl 95.5 0.11 2.4E-06 47.3 9.8 27 196-222 32-58 (202)
415 PRK14738 gmk guanylate kinase; 95.5 0.012 2.6E-07 53.9 3.4 28 193-220 9-36 (206)
416 cd03287 ABC_MSH3_euk MutS3 hom 95.5 0.011 2.3E-07 54.7 3.1 24 196-219 30-53 (222)
417 PRK10751 molybdopterin-guanine 95.5 0.023 5.1E-07 50.0 5.1 29 196-224 5-33 (173)
418 PRK13949 shikimate kinase; Pro 95.5 0.011 2.4E-07 52.1 3.1 24 199-222 3-26 (169)
419 PRK13948 shikimate kinase; Pro 95.5 0.012 2.7E-07 52.4 3.4 27 196-222 9-35 (182)
420 TIGR01447 recD exodeoxyribonuc 95.5 0.067 1.4E-06 56.8 9.4 26 197-222 160-185 (586)
421 COG0378 HypB Ni2+-binding GTPa 95.5 0.017 3.7E-07 51.0 4.1 37 197-233 13-49 (202)
422 COG2804 PulE Type II secretory 95.5 0.046 9.9E-07 55.5 7.7 101 184-294 248-348 (500)
423 PRK10867 signal recognition pa 95.5 0.056 1.2E-06 54.9 8.4 29 196-224 99-127 (433)
424 PRK14529 adenylate kinase; Pro 95.5 0.052 1.1E-06 50.0 7.4 92 200-293 3-97 (223)
425 TIGR01818 ntrC nitrogen regula 95.5 0.26 5.6E-06 51.2 13.7 48 174-221 134-181 (463)
426 COG3640 CooC CO dehydrogenase 95.5 0.019 4.1E-07 52.2 4.4 36 199-234 2-37 (255)
427 PRK05537 bifunctional sulfate 95.5 0.018 3.9E-07 60.9 5.0 50 174-223 369-418 (568)
428 PRK04301 radA DNA repair and r 95.4 0.043 9.2E-07 53.9 7.3 49 184-232 89-143 (317)
429 PRK10463 hydrogenase nickel in 95.4 0.024 5.3E-07 54.0 5.3 36 195-230 102-137 (290)
430 PRK09544 znuC high-affinity zi 95.4 0.096 2.1E-06 49.6 9.4 26 196-221 29-54 (251)
431 TIGR01313 therm_gnt_kin carboh 95.4 0.009 1.9E-07 52.4 2.3 22 200-221 1-22 (163)
432 TIGR02655 circ_KaiC circadian 95.4 0.024 5.1E-07 59.1 5.7 52 181-232 247-298 (484)
433 PRK09280 F0F1 ATP synthase sub 95.4 0.052 1.1E-06 55.3 7.9 87 196-284 143-249 (463)
434 COG1428 Deoxynucleoside kinase 95.4 0.012 2.6E-07 52.7 2.9 26 197-222 4-29 (216)
435 KOG3347 Predicted nucleotide k 95.4 0.012 2.6E-07 49.4 2.7 23 198-220 8-30 (176)
436 cd00984 DnaB_C DnaB helicase C 95.4 0.11 2.4E-06 48.8 9.7 38 195-232 11-49 (242)
437 cd03300 ABC_PotA_N PotA is an 95.4 0.11 2.3E-06 48.6 9.5 26 196-221 25-50 (232)
438 PRK13946 shikimate kinase; Pro 95.4 0.013 2.8E-07 52.6 3.2 25 197-221 10-34 (184)
439 TIGR00764 lon_rel lon-related 95.4 0.026 5.7E-07 60.2 6.0 56 173-232 17-73 (608)
440 cd03298 ABC_ThiQ_thiamine_tran 95.4 0.1 2.2E-06 47.8 9.3 25 196-220 23-47 (211)
441 TIGR03740 galliderm_ABC gallid 95.4 0.087 1.9E-06 48.8 8.8 25 196-220 25-49 (223)
442 TIGR00750 lao LAO/AO transport 95.4 0.03 6.5E-07 54.5 5.9 39 186-224 23-61 (300)
443 PRK14530 adenylate kinase; Pro 95.4 0.012 2.6E-07 54.3 3.0 23 199-221 5-27 (215)
444 COG1419 FlhF Flagellar GTP-bin 95.4 0.16 3.5E-06 50.4 10.8 26 197-222 203-228 (407)
445 PRK13764 ATPase; Provisional 95.4 0.042 9.2E-07 58.0 7.2 84 198-291 258-342 (602)
446 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.028 6E-07 52.2 5.4 48 185-232 4-51 (224)
447 PRK08533 flagellar accessory p 95.3 0.016 3.4E-07 54.0 3.7 38 195-232 22-59 (230)
448 PF06309 Torsin: Torsin; Inte 95.3 0.07 1.5E-06 43.9 6.9 47 175-221 26-77 (127)
449 PLN03186 DNA repair protein RA 95.3 0.12 2.5E-06 51.1 9.8 50 183-232 109-164 (342)
450 PRK13900 type IV secretion sys 95.3 0.016 3.5E-07 56.9 3.9 94 197-295 160-256 (332)
451 COG0563 Adk Adenylate kinase a 95.3 0.013 2.7E-07 52.2 2.8 23 199-221 2-24 (178)
452 PRK12727 flagellar biosynthesi 95.3 0.017 3.6E-07 59.5 4.0 29 196-224 349-377 (559)
453 PRK14737 gmk guanylate kinase; 95.3 0.015 3.3E-07 52.2 3.3 26 196-221 3-28 (186)
454 TIGR00959 ffh signal recogniti 95.3 0.064 1.4E-06 54.5 8.2 27 196-222 98-124 (428)
455 KOG0740 AAA+-type ATPase [Post 95.3 0.31 6.8E-06 48.9 12.7 28 196-223 185-212 (428)
456 PRK14527 adenylate kinase; Pro 95.3 0.015 3.3E-07 52.5 3.3 26 196-221 5-30 (191)
457 PRK14723 flhF flagellar biosyn 95.3 0.26 5.6E-06 53.5 12.9 25 197-221 185-209 (767)
458 COG0194 Gmk Guanylate kinase [ 95.3 0.02 4.2E-07 50.3 3.7 25 197-221 4-28 (191)
459 PRK13975 thymidylate kinase; P 95.3 0.016 3.4E-07 52.6 3.3 26 198-223 3-28 (196)
460 PRK12597 F0F1 ATP synthase sub 95.3 0.06 1.3E-06 55.0 7.7 85 196-283 142-247 (461)
461 TIGR02236 recomb_radA DNA repa 95.2 0.059 1.3E-06 52.8 7.6 49 184-232 82-136 (310)
462 COG2019 AdkA Archaeal adenylat 95.2 0.018 4E-07 49.4 3.4 25 197-221 4-28 (189)
463 TIGR02868 CydC thiol reductant 95.2 0.085 1.8E-06 55.9 9.3 25 196-220 360-384 (529)
464 COG2401 ABC-type ATPase fused 95.2 0.061 1.3E-06 53.0 7.3 57 266-322 518-579 (593)
465 PLN02200 adenylate kinase fami 95.2 0.016 3.5E-07 54.0 3.4 26 196-221 42-67 (234)
466 TIGR03411 urea_trans_UrtD urea 95.2 0.23 4.9E-06 46.7 11.3 25 196-220 27-51 (242)
467 smart00534 MUTSac ATPase domai 95.2 0.036 7.8E-07 49.8 5.5 21 199-219 1-21 (185)
468 PRK05342 clpX ATP-dependent pr 95.2 0.02 4.4E-07 57.9 4.3 27 197-223 108-134 (412)
469 TIGR01039 atpD ATP synthase, F 95.2 0.073 1.6E-06 54.1 8.1 87 196-284 142-248 (461)
470 TIGR03263 guanyl_kin guanylate 95.2 0.013 2.9E-07 52.2 2.7 24 198-221 2-25 (180)
471 PRK00409 recombination and DNA 95.2 0.072 1.6E-06 58.7 8.8 24 196-219 326-349 (782)
472 cd03243 ABC_MutS_homologs The 95.2 0.15 3.2E-06 46.5 9.6 22 198-219 30-51 (202)
473 PRK10416 signal recognition pa 95.2 0.031 6.7E-07 54.7 5.3 29 196-224 113-141 (318)
474 COG0488 Uup ATPase components 95.2 0.099 2.1E-06 54.7 9.2 50 266-317 164-216 (530)
475 PRK00300 gmk guanylate kinase; 95.2 0.016 3.5E-07 52.9 3.2 26 196-221 4-29 (205)
476 PF13521 AAA_28: AAA domain; P 95.2 0.015 3.3E-07 51.0 2.8 21 200-220 2-22 (163)
477 TIGR00041 DTMP_kinase thymidyl 95.1 0.044 9.6E-07 49.5 6.0 26 198-223 4-29 (195)
478 cd01672 TMPK Thymidine monopho 95.1 0.041 8.9E-07 49.8 5.7 26 199-224 2-27 (200)
479 KOG1942 DNA helicase, TBP-inte 95.1 0.05 1.1E-06 51.0 6.1 57 171-227 35-94 (456)
480 PLN02796 D-glycerate 3-kinase 95.1 0.081 1.7E-06 51.7 7.9 28 196-223 99-126 (347)
481 PRK14493 putative bifunctional 95.1 0.025 5.4E-07 54.0 4.3 34 198-232 2-35 (274)
482 KOG0736 Peroxisome assembly fa 95.1 0.34 7.5E-06 51.6 12.8 49 176-224 403-458 (953)
483 PRK06761 hypothetical protein; 95.1 0.024 5.2E-07 54.1 4.2 27 198-224 4-30 (282)
484 TIGR00073 hypB hydrogenase acc 95.1 0.026 5.6E-07 51.7 4.3 30 194-223 19-48 (207)
485 PRK09519 recA DNA recombinatio 95.1 0.077 1.7E-06 57.6 8.4 50 183-232 45-95 (790)
486 PRK11361 acetoacetate metaboli 95.1 0.58 1.2E-05 48.6 14.9 47 174-220 143-189 (457)
487 PRK12289 GTPase RsgA; Reviewed 95.1 0.13 2.8E-06 51.0 9.4 32 183-219 163-194 (352)
488 PRK12678 transcription termina 95.1 0.057 1.2E-06 55.9 7.0 97 186-285 406-515 (672)
489 KOG0927 Predicted transporter 95.1 0.08 1.7E-06 53.9 7.9 25 196-220 100-124 (614)
490 PRK04182 cytidylate kinase; Pr 95.1 0.018 4E-07 51.2 3.2 23 199-221 2-24 (180)
491 PRK14721 flhF flagellar biosyn 95.1 0.12 2.6E-06 52.3 9.1 26 196-221 190-215 (420)
492 TIGR02538 type_IV_pilB type IV 95.0 0.045 9.7E-07 58.1 6.4 113 183-311 305-420 (564)
493 TIGR00176 mobB molybdopterin-g 95.0 0.025 5.4E-07 49.1 3.8 26 199-224 1-26 (155)
494 PRK14531 adenylate kinase; Pro 95.0 0.019 4.1E-07 51.5 3.1 23 199-221 4-26 (183)
495 PRK05057 aroK shikimate kinase 95.0 0.02 4.3E-07 50.7 3.2 24 198-221 5-28 (172)
496 PF03193 DUF258: Protein of un 95.0 0.032 6.9E-07 48.4 4.3 35 181-220 24-58 (161)
497 PRK14532 adenylate kinase; Pro 95.0 0.017 3.7E-07 52.0 2.8 22 200-221 3-24 (188)
498 PRK13768 GTPase; Provisional 95.0 0.03 6.5E-07 53.0 4.5 33 198-230 3-35 (253)
499 TIGR02173 cyt_kin_arch cytidyl 95.0 0.019 4.1E-07 50.6 3.0 23 199-221 2-24 (171)
500 PF03796 DnaB_C: DnaB-like hel 95.0 0.11 2.3E-06 49.5 8.3 65 184-255 7-72 (259)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-88 Score=762.84 Aligned_cols=503 Identities=39% Similarity=0.639 Sum_probs=456.2
Q ss_pred CccEEEcCccccccCchHHHHHHHHhhCCCceEeeCCCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDDQLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKIL 80 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 80 (507)
+|||||||+|+|+|++|++||+++|.++||.+|+|+++++|+.|.+++.+||++|+++|||||++|++|+||++||++|+
T Consensus 12 ~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~ 91 (1153)
T PLN03210 12 VYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIV 91 (1153)
T ss_pred CCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEeEEEEecCcccccccCCCchhhHHHHHHhcch-hhHHHHHHHHHHhhccCCCCccccchhhHHHHHHHH
Q 043250 81 ECKHNYGQIVIPVFYHVDPSHVRSQSQDSSFGKYFSELEKCYP-ENMQRWKNALTEAANLSGFDSHVIRSESKLIEEIAN 159 (507)
Q Consensus 81 ~~~~~~~~~v~pv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~ 159 (507)
+|+++.++.|+||||+|+|++||+|+ |.|+++|.+++++.. +.+++|++||++++++.|+++.....|+++|++|++
T Consensus 92 ~~~~~~~~~v~pvfy~v~p~~v~~~~--g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~ 169 (1153)
T PLN03210 92 RCKEELGQLVIPVFYGLDPSHVRKQT--GDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIAN 169 (1153)
T ss_pred HhhhhcCceEEEEEecccHHHHhhcc--chHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999 999999999988754 449999999999999999999776669999999999
Q ss_pred hhhhcccccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEec--hhh
Q 043250 160 DVLKRLDSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNV--REA 237 (507)
Q Consensus 160 ~~~~~l~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~ 237 (507)
++.+++...++...+.+|||+.++++|..+|..+.+++++|+|+||||+||||||+.+|+++..+|+..+|+... ...
T Consensus 170 ~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 170 DVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred HHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 999999988888889999999999999999987777899999999999999999999999999999999888532 110
Q ss_pred h---c------cCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEE
Q 043250 238 E---E------TGGIKDLQKKLLSELLNDGN--RRNIESQLNRLARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVII 306 (507)
Q Consensus 238 ~---~------~~~~~~l~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~ili 306 (507)
. . ......+..+++..+..... ......+++.+.++|+||||||||+..+++.+.....++++|++|||
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEE
Confidence 0 0 01123445556665544433 33456688999999999999999999999999887778889999999
Q ss_pred EeCchhhHhhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHHHHH
Q 043250 307 TTRDKQVLKTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGRSKEEWES 386 (507)
Q Consensus 307 TtR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~ 386 (507)
|||+..++..++...+|+++.|+.++|++||+++||+...++....+++.+|+++|+|+||||+++|++|++++..+|+.
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~ 409 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMD 409 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 99999998877778899999999999999999999988777777889999999999999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHhHhcCCh-hHHHHHhhccccCCCCCHHHHHHHHHHcCCCchhhHHHHhhCCceeeCCCCeE
Q 043250 387 AMRKLEVIPHEEIQGVLKISYDSLDD-SQKNVFLDIACLLEGTHRDYVISCLDACGFEPKIELSVLECKSLINLDAFDQI 465 (507)
Q Consensus 387 ~l~~l~~~~~~~v~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~ 465 (507)
.+.+++..++..+..+|+.||+.|++ .+|.+|+++|||+.+.+.+.+..++..++..+..+++.|+++|||+.. .+++
T Consensus 410 ~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~ 488 (1153)
T PLN03210 410 MLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIV 488 (1153)
T ss_pred HHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeE
Confidence 99999988888999999999999986 589999999999999999999998888888888899999999999987 6789
Q ss_pred EecHHHHHHHHHHHhhcCCCCCCCcccccCchhHHHHhhcCC
Q 043250 466 RMHDLLRDMGREIVRNESIDYPGKRSRLWHHNDIYEVLKKNT 507 (507)
Q Consensus 466 ~mH~lvr~~a~~~~~~~~~~~~~~r~rl~~~~d~~~~l~~~~ 507 (507)
.||+|+|++|++++++++ .+|++|+|+|+++||.++|.+++
T Consensus 489 ~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~ 529 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNT 529 (1153)
T ss_pred EhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCc
Confidence 999999999999999997 78999999999999999998764
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-41 Score=359.58 Aligned_cols=300 Identities=28% Similarity=0.395 Sum_probs=259.8
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh---hcccccceEEEEechhhhccCCHHHHHHHHHHH
Q 043250 177 VGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK---ISRHFEGSYFALNVREAEETGGIKDLQKKLLSE 253 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 253 (507)
||.+.-++++.+.|...+. .+++|+||||+||||||++++++ +..+|+..+|+. ++..+....++.+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999975433 89999999999999999999984 568899999999 67788999999999998
Q ss_pred HhcCCC---CCC----HHHHHHHHcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhHhh-cCCceeEec
Q 043250 254 LLNDGN---RRN----IESQLNRLARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVLKT-CWASQIYQM 325 (507)
Q Consensus 254 ~~~~~~---~~~----~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~-~~~~~~~~l 325 (507)
++.... ... ...+.+.|.++|+||||||||+..+|+.+...++....||+|++|||+..++.. ++....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 876444 111 122788899999999999999999999999988877789999999999999988 777889999
Q ss_pred CCCChHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCC-CHHHHHHHHHHHhCC-------CC
Q 043250 326 KELVYADAHKLFCQCAFGGD-HPDASHTELTDRAIKYAQGVPLALKVLGCHLCGR-SKEEWESAMRKLEVI-------PH 396 (507)
Q Consensus 326 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-~~~~~~~~l~~l~~~-------~~ 396 (507)
+.|+.+|||.||++.++... ...+..++++++++++|+|+|||++++|+.++.+ +..+|+.+...+... ..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999997663 2334478999999999999999999999999884 667999999987654 13
Q ss_pred chHHHHHHHhHhcCChhHHHHHhhccccCCC--CCHHHHHHHHHHcCCC------------chhhHHHHhhCCceeeCCC
Q 043250 397 EEIQGVLKISYDSLDDSQKNVFLDIACLLEG--THRDYVISCLDACGFE------------PKIELSVLECKSLINLDAF 462 (507)
Q Consensus 397 ~~v~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~------------~~~~l~~L~~~sLi~~~~~ 462 (507)
+.+..++..||+.|+++.|.||++||.||.+ ++.+.+..+|.++|+. ....+.+|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 5688999999999998899999999999998 5889999999999954 2346999999999986532
Q ss_pred ----CeEEecHHHHHHHHHHHhhc
Q 043250 463 ----DQIRMHDLLRDMGREIVRNE 482 (507)
Q Consensus 463 ----~~~~mH~lvr~~a~~~~~~~ 482 (507)
..+.|||++|++|..++.+.
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccc
Confidence 56999999999999999943
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=7.9e-40 Score=280.68 Aligned_cols=150 Identities=30% Similarity=0.528 Sum_probs=135.4
Q ss_pred CccEEEcCccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHH
Q 043250 1 MYDVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKI 79 (507)
Q Consensus 1 ~~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 79 (507)
+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|+||||+|++|+||++||.+|
T Consensus 26 ~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I 105 (187)
T PLN03194 26 PCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALI 105 (187)
T ss_pred CCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHH
Confidence 599999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEeEEEEecCcccccccCCCchhhHHHHHHhcchhhHHHHHHHHHHhhccCCCCcccc-chhhHHHHHHH
Q 043250 80 LECKHNYGQIVIPVFYHVDPSHVRSQSQDSSFGKYFSELEKCYPENMQRWKNALTEAANLSGFDSHVI-RSESKLIEEIA 158 (507)
Q Consensus 80 ~~~~~~~~~~v~pv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~-~~e~~~i~~i~ 158 (507)
+++. ..|+||||+|+|++||+|.. |.+ ..+.+++|++||++++++.|+++... ..|+++|++|+
T Consensus 106 ~e~~----~~ViPIFY~VdPsdVr~q~~-~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv 170 (187)
T PLN03194 106 MESK----KRVIPIFCDVKPSQLRVVDN-GTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMAS 170 (187)
T ss_pred HHcC----CEEEEEEecCCHHHhhcccc-CCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHH
Confidence 9864 47999999999999999841 431 23559999999999999999877532 23999999999
Q ss_pred Hhhhhcc
Q 043250 159 NDVLKRL 165 (507)
Q Consensus 159 ~~~~~~l 165 (507)
+.+.+.+
T Consensus 171 ~~v~k~l 177 (187)
T PLN03194 171 DAVIKNL 177 (187)
T ss_pred HHHHHHH
Confidence 9998765
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.5e-38 Score=306.53 Aligned_cols=262 Identities=29% Similarity=0.454 Sum_probs=204.5
Q ss_pred ccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh--hcccccceEEEEechhhhccCCHHHHHHHHHHHHhc
Q 043250 179 VECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK--ISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLN 256 (507)
Q Consensus 179 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 256 (507)
|+.++++|.+.|....++.++|+|+|+||+||||||.+++++ +..+|+.++|+. .+.......++..++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 788999999999875678999999999999999999999997 889999889987 33344558888888888876
Q ss_pred CCC----CCCH----HHHHHHHcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhcCC-ceeEecCC
Q 043250 257 DGN----RRNI----ESQLNRLARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVLKTCWA-SQIYQMKE 327 (507)
Q Consensus 257 ~~~----~~~~----~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~-~~~~~l~~ 327 (507)
... .... +.+.+.|.++++||||||||+...++.+...++....+++||||||+..+...... ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 632 2222 33788899999999999999999998887776666779999999999988765543 67899999
Q ss_pred CChHHHHHHHHHhhcCCC-CCCCChHHHHHHHHHHhCCChHHHHHHHhhhCC-CCHHHHHHHHHHHhCCC------CchH
Q 043250 328 LVYADAHKLFCQCAFGGD-HPDASHTELTDRAIKYAQGVPLALKVLGCHLCG-RSKEEWESAMRKLEVIP------HEEI 399 (507)
Q Consensus 328 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~-~~~~~~~~~l~~l~~~~------~~~v 399 (507)
|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++++. .+..+|...++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999986544 233445678999999999999999999999944 25678888888765432 4679
Q ss_pred HHHHHHhHhcCChhHHHHHhhccccCCC--CCHHHHHHHHHHcCCCc
Q 043250 400 QGVLKISYDSLDDSQKNVFLDIACLLEG--THRDYVISCLDACGFEP 444 (507)
Q Consensus 400 ~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~~ 444 (507)
..++..||+.|+++.|.||.+||+||.+ ++.+.+..+|..+|+..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 9999999999999999999999999987 56999999998877643
No 5
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.83 E-value=2.9e-20 Score=160.27 Aligned_cols=134 Identities=41% Similarity=0.646 Sum_probs=112.1
Q ss_pred CccEEEcCcc-ccccCchHHHHHHHHhhCCCceEeeCCCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHH
Q 043250 1 MYDVFLSFRG-EDTRDNFTSILHYVLSLKSIKTFIDDQLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKI 79 (507)
Q Consensus 1 ~~dvFis~~~-~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~ 79 (507)
.|||||||++ ++....|+.+|...|...|+.+|.|+....|..+ .+|.++|++|+++|+|+||+|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 4555789999999999999999999844333333 4999999999999999999999999999999999
Q ss_pred HHHHHh-CCCeEEeEEEEecCcccccccCCCchhhHHHHHHhcchhhH--HHHHHHHHHhh
Q 043250 80 LECKHN-YGQIVIPVFYHVDPSHVRSQSQDSSFGKYFSELEKCYPENM--QRWKNALTEAA 137 (507)
Q Consensus 80 ~~~~~~-~~~~v~pv~~~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~--~~w~~al~~~~ 137 (507)
..+... ....||||+++..|+.+..+. +.+...+..+.....+.. ..|+.++..+.
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~--~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQP--GKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcc--cHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 988754 667999999999888888888 889988888745555554 58988877654
No 6
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=1.5e-21 Score=167.90 Aligned_cols=129 Identities=36% Similarity=0.574 Sum_probs=110.5
Q ss_pred EEEcCccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHHH
Q 043250 4 VFLSFRGEDTRDNFTSILHYVLSLK--SIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKIL 80 (507)
Q Consensus 4 vFis~~~~d~~~~~~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 80 (507)
|||||++.|.+..|+.+|...|++. |+++|+++ |+.+|..+.++|.++|++|+++|+|+|++|++|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444556999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhCC--CeEEeEEEEecCcccc-cccCCCchhhHHHHHHhcchh-----hHHHHHHHHH
Q 043250 81 ECKHNYG--QIVIPVFYHVDPSHVR-SQSQDSSFGKYFSELEKCYPE-----NMQRWKNALT 134 (507)
Q Consensus 81 ~~~~~~~--~~v~pv~~~v~ps~vr-~~~~~~~~~~~~~~~~~~~~~-----~~~~w~~al~ 134 (507)
++....+ ..|+|+||.+.+++++ .+. +.+...|........+ ....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQS--LRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHH--HHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhh--HHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9987655 7899999999999999 688 8888888776555432 2788888764
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.75 E-value=2.8e-16 Score=176.78 Aligned_cols=291 Identities=15% Similarity=0.157 Sum_probs=188.7
Q ss_pred ccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
||..+..++-|..-++.|.+ ....+++.|+|++|.||||++.++.+.. +.+.|+. +.. ...+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~--~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE--SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc--ccCCHHHHHH
Confidence 55667788999876666653 2357899999999999999999988643 3578885 321 1233344444
Q ss_pred HHHHHHhcCCC--------------CCCHH----HHHHHHc--CCcEEEEEcCCCCH---H---HHHHHHcccCCCCCCc
Q 043250 249 KLLSELLNDGN--------------RRNIE----SQLNRLA--RKKVLIVFDDVSHR---R---QIESLIGCLDELASGS 302 (507)
Q Consensus 249 ~l~~~~~~~~~--------------~~~~~----~l~~~l~--~~~~LlVlDdv~~~---~---~~~~l~~~l~~~~~~~ 302 (507)
.++..+..... ..... .+...+. +.+++|||||+... . .+..++.. ..++.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCe
Confidence 44444421100 01222 1333333 57999999999542 1 23333333 34667
Q ss_pred EEEEEeCchhhHh--hc-CCceeEecC----CCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 303 RVIITTRDKQVLK--TC-WASQIYQMK----ELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 303 ~iliTtR~~~~~~--~~-~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
++|||||...-.. .+ ......++. +|+.+|+.+||..... . ....+.+..|.+.|+|+|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~--~---~~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS--S---PIEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC--C---CCCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 8889999853221 11 122345556 9999999999976541 1 123566889999999999999999887
Q ss_pred hCCCCHHHHHHHHHHHhCCCCchHHHHHHH-hHhcCChhHHHHHhhccccCCCCCHHHHHHHHHHcCCCchhhHHHHhhC
Q 043250 376 LCGRSKEEWESAMRKLEVIPHEEIQGVLKI-SYDSLDDSQKNVFLDIACLLEGTHRDYVISCLDACGFEPKIELSVLECK 454 (507)
Q Consensus 376 l~~~~~~~~~~~l~~l~~~~~~~v~~~l~~-s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~ 454 (507)
+..... ........+...+...+...+.. .++.||++.++++..+|+++ .++.+.+..+.+. ......+..|.+.
T Consensus 229 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~ 304 (903)
T PRK04841 229 ARQNNS-SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQ 304 (903)
T ss_pred HhhCCC-chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHC
Confidence 754321 01111222222223456665544 48999999999999999986 7887777766642 2456789999999
Q ss_pred Cceee--CC-CCeEEecHHHHHHHHHHHhhcC
Q 043250 455 SLINL--DA-FDQIRMHDLLRDMGREIVRNES 483 (507)
Q Consensus 455 sLi~~--~~-~~~~~mH~lvr~~a~~~~~~~~ 483 (507)
+|+.. ++ ..+|++|++++++.++.+..+.
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 99653 22 2479999999999999886553
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.65 E-value=4.3e-17 Score=132.08 Aligned_cols=87 Identities=32% Similarity=0.531 Sum_probs=75.4
Q ss_pred EEEcCccccccCchHHHHHHHHhhCCCceEeeCCCCCCCcccHHHHHHhhhcceEEEEecCCCcCchhhHHHHHHHHHHH
Q 043250 4 VFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDDQLIRGENISHSLLDTIEASSISIIIFSQRYASSRWCLDELLKILECK 83 (507)
Q Consensus 4 vFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~ 83 (507)
|||||+++| ..|+.+|...|++.|+++|+|.++.+|+.+.+.|.++|++|+.+|+++||+|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 6799999999999999999999889999999999999999999999999999999999999988732
Q ss_pred HhCCCeEEeEEEE
Q 043250 84 HNYGQIVIPVFYH 96 (507)
Q Consensus 84 ~~~~~~v~pv~~~ 96 (507)
.+..|+||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 45579999844
No 9
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.60 E-value=1.4e-14 Score=157.78 Aligned_cols=319 Identities=15% Similarity=0.186 Sum_probs=194.2
Q ss_pred ccccccchHHHHHHhhhcC-CCCceEEEEeccccchhhHHHHHHHhhhcccc---cceEEEEechhhhccCCHHHHHHHH
Q 043250 175 GLVGVECPIEEIESLLCIG-SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---EGSYFALNVREAEETGGIKDLQKKL 250 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~l~~~l 250 (507)
.++||+.+++.|...+... .+...++.|.|.+|||||+|+.++...+.+.+ -...|-. .....+...+.+.++.+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQ-FERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhccc-ccCCCchHHHHHHHHHH
Confidence 3799999999999988763 44577999999999999999999999765541 1111110 11111222223333333
Q ss_pred HHHHhcCCC---------------------CC-------------------CH--HH---------HHHHH-cCCcEEEE
Q 043250 251 LSELLNDGN---------------------RR-------------------NI--ES---------QLNRL-ARKKVLIV 278 (507)
Q Consensus 251 ~~~~~~~~~---------------------~~-------------------~~--~~---------l~~~l-~~~~~LlV 278 (507)
..++....+ .+ .. +. +.... +.+|.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 333211100 00 00 00 11222 34699999
Q ss_pred EcCC-CCHHH----HHHHHcccCC-CCCCcEE--EEEeCch--hhHhhcCCceeEecCCCChHHHHHHHHHhhcCCCCCC
Q 043250 279 FDDV-SHRRQ----IESLIGCLDE-LASGSRV--IITTRDK--QVLKTCWASQIYQMKELVYADAHKLFCQCAFGGDHPD 348 (507)
Q Consensus 279 lDdv-~~~~~----~~~l~~~l~~-~~~~~~i--liTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 348 (507)
+||+ |-+.. ++.++....- ......+ +.|.+.. .+.........+.|.||+..+...++....... .
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~---~ 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT---K 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---c
Confidence 9999 54333 3333333210 0001122 2233322 112222244789999999999999998776321 2
Q ss_pred CChHHHHHHHHHHhCCChHHHHHHHhhhCCC-------CHHHHHHHHHHHhCCC-CchHHHHHHHhHhcCChhHHHHHhh
Q 043250 349 ASHTELTDRAIKYAQGVPLALKVLGCHLCGR-------SKEEWESAMRKLEVIP-HEEIQGVLKISYDSLDDSQKNVFLD 420 (507)
Q Consensus 349 ~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-------~~~~~~~~l~~l~~~~-~~~v~~~l~~s~~~L~~~~~~~l~~ 420 (507)
....+....|++++.|+|+++..+-..+... +...|......+.... .+.+...+...++.||...|+++..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2335678999999999999999999998653 3344555544443322 2335567889999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHcCCCchhhHHHHhhCCceeeCC--------CC---eEEecHHHHHHHHHHHhhcCCCCCCC
Q 043250 421 IACLLEGTHRDYVISCLDACGFEPKIELSVLECKSLINLDA--------FD---QIRMHDLLRDMGREIVRNESIDYPGK 489 (507)
Q Consensus 421 la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~---~~~mH~lvr~~a~~~~~~~~~~~~~~ 489 (507)
.||++..|+.+.|..++..........+-.....++|...+ .. +-+.|+++|+.+...+.+..
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~~------ 390 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPESQ------ 390 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchhh------
Confidence 99999999999999988754433333344444444444321 11 22779999999887766542
Q ss_pred cccccCchhHHHHhhc
Q 043250 490 RSRLWHHNDIYEVLKK 505 (507)
Q Consensus 490 r~rl~~~~d~~~~l~~ 505 (507)
|...|..|...|..
T Consensus 391 --rq~~H~~i~~lL~~ 404 (849)
T COG3899 391 --RQYLHLRIGQLLEQ 404 (849)
T ss_pred --HHHHHHHHHHHHHH
Confidence 34456666555544
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.57 E-value=1.8e-13 Score=141.84 Aligned_cols=293 Identities=15% Similarity=0.155 Sum_probs=192.9
Q ss_pred ccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
+|..+.+.|-|..-++.|.+ ..+.|.+.|+.|+|.|||||+.+++.. ...-..+.|+..-.+ ..+...+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlslde~---dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSLDES---DNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeecCCc---cCCHHHHHH
Confidence 34456778888766665554 346899999999999999999999983 444567888873222 345556666
Q ss_pred HHHHHHhcCCC--------------CCCHHHH----HHHHc--CCcEEEEEcCCCC------HHHHHHHHcccCCCCCCc
Q 043250 249 KLLSELLNDGN--------------RRNIESQ----LNRLA--RKKVLIVFDDVSH------RRQIESLIGCLDELASGS 302 (507)
Q Consensus 249 ~l~~~~~~~~~--------------~~~~~~l----~~~l~--~~~~LlVlDdv~~------~~~~~~l~~~l~~~~~~~ 302 (507)
.++..+....+ ...+..+ ...+. .+++++||||..- ...++.++... .++.
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCe
Confidence 66655542211 1122222 33232 3689999999932 23355555543 4788
Q ss_pred EEEEEeCchhhHhhcC---CceeEecC----CCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 303 RVIITTRDKQVLKTCW---ASQIYQMK----ELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 303 ~iliTtR~~~~~~~~~---~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
.+++|||+..-+.... ....++++ .|+.+|+.++|.... + .+.....++.+.+.++|.+-|+.+++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~--~---l~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG--S---LPLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC--C---CCCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 8999999874432211 12233443 589999999997765 1 2233556889999999999999999988
Q ss_pred hCCC-CHHHHHHHHHHHhCCCCchHH-HHHHHhHhcCChhHHHHHhhccccCCCCCHHHHHHHHHHcCCCchhhHHHHhh
Q 043250 376 LCGR-SKEEWESAMRKLEVIPHEEIQ-GVLKISYDSLDDSQKNVFLDIACLLEGTHRDYVISCLDACGFEPKIELSVLEC 453 (507)
Q Consensus 376 l~~~-~~~~~~~~l~~l~~~~~~~v~-~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~ 453 (507)
+++. +.+. ....+... ..-+. -+.+.-++.||++.|.+++.+|++.. ++-+....+.+.. .....+++|.+
T Consensus 237 ~~~~~~~~q---~~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQ---SLRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELER 309 (894)
T ss_pred ccCCCcHHH---Hhhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHh
Confidence 8743 3222 11112111 11222 24556789999999999999999843 5555555555332 34456999999
Q ss_pred CCceee---CCCCeEEecHHHHHHHHHHHhhcCCC
Q 043250 454 KSLINL---DAFDQIRMHDLLRDMGREIVRNESID 485 (507)
Q Consensus 454 ~sLi~~---~~~~~~~mH~lvr~~a~~~~~~~~~~ 485 (507)
++|.-. ++.++|+.|.++.+|.+.....+.+.
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~ 344 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAA 344 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhccccCC
Confidence 998662 34678999999999999988886543
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.53 E-value=2.2e-12 Score=131.09 Aligned_cols=278 Identities=17% Similarity=0.140 Sum_probs=167.6
Q ss_pred ccCCccccccchHHHHHHhhhcC--CCCceEEEEeccccchhhHHHHHHHhhhccccc--ceEEEEechhhhccCCHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIG--SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l 246 (507)
..|+.|+||+.|+++|...+... ....+.+.|+|++|+|||++++.+++.+..... ..+++. .....+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHH
Confidence 46788999999999999998542 234456889999999999999999998765432 233333 2223455677
Q ss_pred HHHHHHHHhcCCC---CCCHH----HHHHHHc--CCcEEEEEcCCCCHH------HHHHHHcccCCCC-CCcEEEEEeCc
Q 043250 247 QKKLLSELLNDGN---RRNIE----SQLNRLA--RKKVLIVFDDVSHRR------QIESLIGCLDELA-SGSRVIITTRD 310 (507)
Q Consensus 247 ~~~l~~~~~~~~~---~~~~~----~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~~~-~~~~iliTtR~ 310 (507)
+..++..+..... ....+ .+.+.+. +++++||||+++... .+..+........ ....+|.++.+
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 7777777754211 11222 2444443 456899999997643 3444443322211 12335666655
Q ss_pred hhhHhhc-------CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHh----CCChHHHHHHHhhh---
Q 043250 311 KQVLKTC-------WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYA----QGVPLALKVLGCHL--- 376 (507)
Q Consensus 311 ~~~~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~~~~l--- 376 (507)
....... .....+.+++++.++..+++..++-....+.....+.++.+++.+ |..+.++..+-...
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4332211 123467999999999999998876322111122344555555555 44667776664322
Q ss_pred --CC---CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccC----CCCCHHHHHHH----HHHcCCC
Q 043250 377 --CG---RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLL----EGTHRDYVISC----LDACGFE 443 (507)
Q Consensus 377 --~~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~~----~~~~~~~ 443 (507)
.+ -+.+....+.... -...+...+..||..+|.+|..++... ..++...+... ....+..
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 2445555555544 123455678999999999998877553 23455444432 2222322
Q ss_pred ------chhhHHHHhhCCceee
Q 043250 444 ------PKIELSVLECKSLINL 459 (507)
Q Consensus 444 ------~~~~l~~L~~~sLi~~ 459 (507)
....++.|...|||..
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEE
Confidence 2346899999999985
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.47 E-value=1.2e-12 Score=128.09 Aligned_cols=257 Identities=16% Similarity=0.118 Sum_probs=153.6
Q ss_pred CccccccchHHHHHHhhhcC---CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIG---SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 250 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 250 (507)
..|+|++..+++|..++... ....+.+.|+|++|+|||+||+.+++.+...+. ....... .....+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~---~~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL---EKPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh---cCchhHH-HH
Confidence 46999999999999888631 233556889999999999999999998754321 1111000 1111111 11
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccC-------------------CCCCCcEEEEEeC
Q 043250 251 LSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLD-------------------ELASGSRVIITTR 309 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~-------------------~~~~~~~iliTtR 309 (507)
+..+ +...+|++|+++.. ...+.+...+. ...+.+-|..||+
T Consensus 76 l~~~-----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 76 LTNL-----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHhc-----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 1111 22346666666422 11112211110 0123444556666
Q ss_pred chhhHhhc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHHHHHH
Q 043250 310 DKQVLKTC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGRSKEEWESA 387 (507)
Q Consensus 310 ~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~ 387 (507)
...+.... .....+.+++++.++..+++...+... ......+.+..|++.|+|.|..+..++..+. ...
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~--~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a 209 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL--NVEIEPEAALEIARRSRGTPRIANRLLRRVR-------DFA 209 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHH
Confidence 54332221 123567999999999999998877432 2234467789999999999977665555331 000
Q ss_pred HHHHhCC-CC-c---hHHHHHHHhHhcCChhHHHHHh-hccccCC-CCCHHHHHHHHHHcCCCchhhHH-HHhhCCceee
Q 043250 388 MRKLEVI-PH-E---EIQGVLKISYDSLDDSQKNVFL-DIACLLE-GTHRDYVISCLDACGFEPKIELS-VLECKSLINL 459 (507)
Q Consensus 388 l~~l~~~-~~-~---~v~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~ 459 (507)
. ..... .. + .....+...+..|++.++..|. .++.+.. +++.+.+...++.+.......++ .|++++||..
T Consensus 210 ~-~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 210 Q-VRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred H-HcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCccc
Confidence 0 00000 01 1 1111244557788888888887 4455544 37888888888887777777788 6999999987
Q ss_pred CCCCeE
Q 043250 460 DAFDQI 465 (507)
Q Consensus 460 ~~~~~~ 465 (507)
.+.|++
T Consensus 289 ~~~g~~ 294 (305)
T TIGR00635 289 TPRGRI 294 (305)
T ss_pred CCchhh
Confidence 666654
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.44 E-value=3e-12 Score=126.34 Aligned_cols=262 Identities=15% Similarity=0.104 Sum_probs=157.9
Q ss_pred cccCCccccccchHHHHHHhhhc---CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCI---GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 246 (507)
|.....|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. +.. .... ... ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~---~~~-~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL---EKP-GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc---cCh-HH
Confidence 34557899999999999888763 2334567899999999999999999998754321 111 1101 011 11
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH--HHHHHHcccC-------------------CCCCCcEEE
Q 043250 247 QKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR--QIESLIGCLD-------------------ELASGSRVI 305 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~-------------------~~~~~~~il 305 (507)
+..++. .+ +...+|+||+++... ..+.+...+. ...+.+-|.
T Consensus 93 l~~~l~----------------~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 93 LAAILT----------------NL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred HHHHHH----------------hc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 111111 11 234577777775321 1111111100 001234455
Q ss_pred EEeCchhhHhhc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHH
Q 043250 306 ITTRDKQVLKTC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGRSKEE 383 (507)
Q Consensus 306 iTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~ 383 (507)
.|++...+.... .....+++++++.++..+++...+... ......+.+..|++.|+|.|-.+..+...+. .
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~ 228 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL--GVEIDEEGALEIARRSRGTPRIANRLLRRVR-----D 228 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----H
Confidence 566654332221 123568999999999999999877432 2334567899999999999976666655431 1
Q ss_pred HHHHHHHHhCCCCc---hHHHHHHHhHhcCChhHHHHHh-hccccCC-CCCHHHHHHHHHHcCCCchhhHH-HHhhCCce
Q 043250 384 WESAMRKLEVIPHE---EIQGVLKISYDSLDDSQKNVFL-DIACLLE-GTHRDYVISCLDACGFEPKIELS-VLECKSLI 457 (507)
Q Consensus 384 ~~~~l~~l~~~~~~---~v~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi 457 (507)
|.... .-...... .....+...+..|++..+..|. .+..|.. ++..+.+...+..+.......++ .|++.+||
T Consensus 229 ~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 229 FAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCc
Confidence 11100 00000011 1223344556788888888886 5556654 47889999998877777777888 99999999
Q ss_pred eeCCCCe
Q 043250 458 NLDAFDQ 464 (507)
Q Consensus 458 ~~~~~~~ 464 (507)
+....|+
T Consensus 308 ~~~~~gr 314 (328)
T PRK00080 308 QRTPRGR 314 (328)
T ss_pred ccCCchH
Confidence 8665554
No 14
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=8.1e-11 Score=118.40 Aligned_cols=279 Identities=17% Similarity=0.136 Sum_probs=159.9
Q ss_pred ccCCccccccchHHHHHHhhhc--CCCCceEEEEeccccchhhHHHHHHHhhhccccc------ceEEEEechhhhccCC
Q 043250 171 SENKGLVGVECPIEEIESLLCI--GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE------GSYFALNVREAEETGG 242 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 242 (507)
..|+.++||+.|+++|...|.. .......+.|+|++|+|||++++.+++.+..... ..+|+. ......
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCC
Confidence 4567899999999999999874 2234567899999999999999999987643322 233443 222344
Q ss_pred HHHHHHHHHHHHhc---CCC--CCC----HHHHHHHHc--CCcEEEEEcCCCCHH-----HHHHHHccc--CCC-CCCcE
Q 043250 243 IKDLQKKLLSELLN---DGN--RRN----IESQLNRLA--RKKVLIVFDDVSHRR-----QIESLIGCL--DEL-ASGSR 303 (507)
Q Consensus 243 ~~~l~~~l~~~~~~---~~~--~~~----~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~l--~~~-~~~~~ 303 (507)
...++..++..+.. ..+ ... ...+.+.+. +++++||||+++... .+..+.... ... +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 56677777777632 111 111 233444443 567899999997651 133333221 111 12334
Q ss_pred EEEEeCchhhHhhcC-------CceeEecCCCChHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHHhCCChHHH-HHH
Q 043250 304 VIITTRDKQVLKTCW-------ASQIYQMKELVYADAHKLFCQCAF---GGDHPDASHTELTDRAIKYAQGVPLAL-KVL 372 (507)
Q Consensus 304 iliTtR~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~---~~~~~~~~~~~~~~~i~~~~~G~PLal-~~~ 372 (507)
+|+++........+. ....+.+++++.++..+++..++- ......+...+.+..++..+.|.|..+ ..+
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455554443221111 124688999999999999988763 111122222234455666777888443 332
Q ss_pred Hhhh-----CC---CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccC----CCCCHHHHHHHH---
Q 043250 373 GCHL-----CG---RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLL----EGTHRDYVISCL--- 437 (507)
Q Consensus 373 ~~~l-----~~---~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~~~--- 437 (507)
-... .+ -+.+....+...+. ......++..||..++.++..++... ..+....+....
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 2111 11 23444444444331 23445678899999988887766432 124444443321
Q ss_pred -HHcCC------CchhhHHHHhhCCceeeC
Q 043250 438 -DACGF------EPKIELSVLECKSLINLD 460 (507)
Q Consensus 438 -~~~~~------~~~~~l~~L~~~sLi~~~ 460 (507)
...+. .....++.|...|||+..
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11121 123468999999999964
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.42 E-value=7.2e-13 Score=124.39 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=102.4
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHH------HHH
Q 043250 176 LVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL------QKK 249 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 249 (507)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.........+|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999743 35679999999999999999999987543334444432221111 011111 111
Q ss_pred ----HHHHHhcCC-----------CCCCHHHHHHHHcC--CcEEEEEcCCCCHH-----------HHHHHHcccCCCCCC
Q 043250 250 ----LLSELLNDG-----------NRRNIESQLNRLAR--KKVLIVFDDVSHRR-----------QIESLIGCLDELASG 301 (507)
Q Consensus 250 ----l~~~~~~~~-----------~~~~~~~l~~~l~~--~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~~ 301 (507)
+...+.... ....+..+.+.+.. ++++||+||+.... .+..++..... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 111111100 02233445555543 45999999995433 12333333222 233
Q ss_pred cEEEEEeCchhhHhh--------cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 302 SRVIITTRDKQVLKT--------CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 302 ~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
..+++++........ .+....+.|++|+.+++.+++....-.. ...+...+..++++..+||+|..|..+
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 445555554444332 2233459999999999999998865322 111235677899999999999998753
No 16
>PF05729 NACHT: NACHT domain
Probab=99.26 E-value=7.2e-11 Score=104.47 Aligned_cols=142 Identities=20% Similarity=0.305 Sum_probs=85.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccccc-----ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHH-HHH-HH
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFE-----GSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIES-QLN-RL 270 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-l~~-~l 270 (507)
|++.|+|.+|+||||++..++..+..... ..+++...+..........+...+....... ...... +.. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES--IAPIEELLQELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc--hhhhHHHHHHHHH
Confidence 57899999999999999999987654431 2333333443333222223333333332211 111111 222 23
Q ss_pred cCCcEEEEEcCCCCHHH---------HHHHHccc-CC-CCCCcEEEEEeCchhh---HhhcCCceeEecCCCChHHHHHH
Q 043250 271 ARKKVLIVFDDVSHRRQ---------IESLIGCL-DE-LASGSRVIITTRDKQV---LKTCWASQIYQMKELVYADAHKL 336 (507)
Q Consensus 271 ~~~~~LlVlDdv~~~~~---------~~~l~~~l-~~-~~~~~~iliTtR~~~~---~~~~~~~~~~~l~~L~~~ea~~L 336 (507)
..+++++|||++++... +..++..+ .. ..++++++||+|.... .........+++.+|+.++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56899999999964322 22222222 21 2578999999998765 22333446799999999999999
Q ss_pred HHHhh
Q 043250 337 FCQCA 341 (507)
Q Consensus 337 ~~~~~ 341 (507)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 97764
No 17
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=8.6e-10 Score=105.98 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=106.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC----HHHHHHH---
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRN----IESQLNR--- 269 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~l~~~--- 269 (507)
...+.|+|++|+|||||++.+++.+...-...+++. ....+..+++..+...++....... ...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999987653211122222 1123455666677666544322111 1122222
Q ss_pred --HcCCcEEEEEcCCCCH--HHHHHHHc---ccCCCCCCcEEEEEeCchhhHhhc----------CCceeEecCCCChHH
Q 043250 270 --LARKKVLIVFDDVSHR--RQIESLIG---CLDELASGSRVIITTRDKQVLKTC----------WASQIYQMKELVYAD 332 (507)
Q Consensus 270 --l~~~~~LlVlDdv~~~--~~~~~l~~---~l~~~~~~~~iliTtR~~~~~~~~----------~~~~~~~l~~L~~~e 332 (507)
..+++.++|+||++.. ..++.+.. ..........|++|.... ..... .....+++++|+.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2568899999999753 33444322 111112233456665433 11111 123467899999999
Q ss_pred HHHHHHHhhcCCC--CCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 333 AHKLFCQCAFGGD--HPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 333 a~~L~~~~~~~~~--~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
..+++........ ....-..+..+.|++.++|+|..|+.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987653221 1223456889999999999999999998876
No 18
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.22 E-value=1.2e-11 Score=119.34 Aligned_cols=282 Identities=16% Similarity=0.211 Sum_probs=191.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
..+.+.++|.|||||||++.++.+ +...|...+++.+...++....+...+...+... .......+..+......++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~-~~~g~~~~~~~~~~~~~rr~ 90 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLH-VQPGDSAVDTLVRRIGDRRA 90 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccc-cccchHHHHHHHHHHhhhhH
Confidence 467899999999999999999999 8888999999887777655443333332211111 11113355568888899999
Q ss_pred EEEEcCCCCHH-HHHHHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEecCCCChH-HHHHHHHHhhcCCC---CCCCC
Q 043250 276 LIVFDDVSHRR-QIESLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQMKELVYA-DAHKLFCQCAFGGD---HPDAS 350 (507)
Q Consensus 276 LlVlDdv~~~~-~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~---~~~~~ 350 (507)
++|+||..... +...+...+....+...++.|+|..... .....+.+++|+.. ++.++|...+.... .....
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 99999997653 3333444444445666789999976432 25567788888876 78888877653211 12233
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHHHHHHHHH----HhCC------CCchHHHHHHHhHhcCChhHHHHHhh
Q 043250 351 HTELTDRAIKYAQGVPLALKVLGCHLCGRSKEEWESAMRK----LEVI------PHEEIQGVLKISYDSLDDSQKNVFLD 420 (507)
Q Consensus 351 ~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~l~~----l~~~------~~~~v~~~l~~s~~~L~~~~~~~l~~ 420 (507)
.......|+++.+|.|++|..+++..+...+.+....+.. +... ........+..||.-|+..++-.|..
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~r 247 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGR 247 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcc
Confidence 4566889999999999999999999988766554444432 2222 12345678899999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHc-----CCCchhhHHHHhhCCceeeCC---CCeEEecHHHHHHHHHHHhhc
Q 043250 421 IACLLEGTHRDYVISCLDAC-----GFEPKIELSVLECKSLINLDA---FDQIRMHDLLRDMGREIVRNE 482 (507)
Q Consensus 421 la~f~~~~~~~~l~~~~~~~-----~~~~~~~l~~L~~~sLi~~~~---~~~~~mH~lvr~~a~~~~~~~ 482 (507)
++.|...|..+.....-... .+.....+..|+++|++.... .-.|+.-+-++.|+.+.+.+.
T Consensus 248 La~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 248 LAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998877332222111 122334577888999987432 234666666677666666554
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.15 E-value=7.4e-10 Score=106.34 Aligned_cols=150 Identities=22% Similarity=0.390 Sum_probs=96.8
Q ss_pred CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCC
Q 043250 194 SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARK 273 (507)
Q Consensus 194 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~ 273 (507)
++....+.+||+||+||||||+.++......|...--+ ..++.++..-+-.. -.....++
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~e~a------------~~~~~~gr 104 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREIIEEA------------RKNRLLGR 104 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHHHHH------------HHHHhcCC
Confidence 45567788999999999999999999766554322111 23333333222111 12234578
Q ss_pred cEEEEEcCC--CCHHHHHHHHcccCCCCCCcEEEE--EeCchhh---HhhcCCceeEecCCCChHHHHHHHHHhhcCCC-
Q 043250 274 KVLIVFDDV--SHRRQIESLIGCLDELASGSRVII--TTRDKQV---LKTCWASQIYQMKELVYADAHKLFCQCAFGGD- 345 (507)
Q Consensus 274 ~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~ili--TtR~~~~---~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~- 345 (507)
+.+|++|.| .+..+-+.|++.+. .|.-|+| ||-++.. ........++++++|+.++..+++.+......
T Consensus 105 ~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~r 181 (436)
T COG2256 105 RTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEER 181 (436)
T ss_pred ceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhc
Confidence 999999999 46667777877653 5665555 6666633 11223568899999999999999988332211
Q ss_pred ----CCCCChHHHHHHHHHHhCCCh
Q 043250 346 ----HPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 346 ----~~~~~~~~~~~~i~~~~~G~P 366 (507)
......++....+++.++|=-
T Consensus 182 gl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 182 GLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred CCCcccccCCHHHHHHHHHhcCchH
Confidence 111234567788888888854
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=99.11 E-value=3.3e-09 Score=98.96 Aligned_cols=155 Identities=16% Similarity=0.173 Sum_probs=96.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
..+.+.|+|++|+|||+|+..+++.+..+...+.|+.. ... ...... +.+.+. +.-
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~~---~~~~~~----------------~~~~~~-~~d 93 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SKS---QYFSPA----------------VLENLE-QQD 93 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HHh---hhhhHH----------------HHhhcc-cCC
Confidence 34678999999999999999999987666566666651 110 000011 111222 234
Q ss_pred EEEEcCCCCH---HHHH-HHHcccCCC-CCCcEEE-EEeCc---------hhhHhhcCCceeEecCCCChHHHHHHHHHh
Q 043250 276 LIVFDDVSHR---RQIE-SLIGCLDEL-ASGSRVI-ITTRD---------KQVLKTCWASQIYQMKELVYADAHKLFCQC 340 (507)
Q Consensus 276 LlVlDdv~~~---~~~~-~l~~~l~~~-~~~~~il-iTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 340 (507)
+|+|||++.. ..++ .+...+... ..+..+| +|+.. +.+...+.....+++++++.++.++++.+.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 8999999753 2222 232222211 2355554 45543 233444445568899999999999999988
Q ss_pred hcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 341 AFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
+.... -....+....|++.+.|..-.+..+-..|
T Consensus 174 a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 174 AYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 85433 23446788899999988777666555443
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=4.7e-08 Score=102.52 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=113.8
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc---------------------ccce
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGS 228 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~ 228 (507)
|...+.+||.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 334468999999999999998743 235567899999999999999999865321 1111
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCCH--HHHHHHHcccCCCCCC
Q 043250 229 YFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSHR--RQIESLIGCLDELASG 301 (507)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 301 (507)
+.+. .....++ +.+..+.+.. .++.-++|||+++.. ..+..|+..+......
T Consensus 91 iEID----Aas~rgV-----------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMD----AASNRGV-----------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEec----ccccccH-----------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 1111 0000111 1111122221 235568999999754 4467777766554567
Q ss_pred cEEEEEeCchhhHh-h-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh-HHHHHH
Q 043250 302 SRVIITTRDKQVLK-T-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP-LALKVL 372 (507)
Q Consensus 302 ~~iliTtR~~~~~~-~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 372 (507)
.++|+||.+..-.. . ...+..+.+.+++.++..+.+........ .....+.+..|++.++|.. -+|.++
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78887777654321 1 23467899999999999999987663222 2344677889999998865 455543
No 22
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.98 E-value=1.1e-07 Score=96.80 Aligned_cols=180 Identities=21% Similarity=0.295 Sum_probs=109.0
Q ss_pred ccCCccccccchHHH---HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 171 SENKGLVGVECPIEE---IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 171 ~~~~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
...+.++|++..+.. |..++.. +....+.|+|++|+||||||+.+++.....|. .+.. . ..+...+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a---~--~~~~~~i- 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA---V--TSGVKDL- 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec---c--cccHHHH-
Confidence 344678999888766 7777753 34557889999999999999999987654332 1110 0 1111111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEE--EeCchhh--H-hhcCCc
Q 043250 248 KKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVII--TTRDKQV--L-KTCWAS 320 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~ili--TtR~~~~--~-~~~~~~ 320 (507)
..++.... .....+++.+|+||+++.. .+.+.++..+. .+..++| ||.+... . ......
T Consensus 78 r~ii~~~~-----------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 78 REVIEEAR-----------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HHHHHHHH-----------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccc
Confidence 11211110 0112457889999999743 45556665544 2444444 3444321 1 112234
Q ss_pred eeEecCCCChHHHHHHHHHhhcCCCCC-CCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 321 QIYQMKELVYADAHKLFCQCAFGGDHP-DASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 321 ~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
..+.+.+++.++..+++.......... .....+....+++.++|.|..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 789999999999999998765321111 1344677889999999999776555443
No 23
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.97 E-value=4e-08 Score=91.78 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=105.4
Q ss_pred Ccccc--ccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHH
Q 043250 174 KGLVG--VECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 174 ~~~vG--R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
+.|++ ....++.+.+++. ....+.+.|+|++|+|||+||+.++++........+++. +...... ...
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~~~-- 83 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------DPE-- 83 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------HHH--
Confidence 45553 3446677777754 234567999999999999999999987654444445554 2221110 011
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH---H-HHHHHcccCC-CCCCcEEEEEeCchhh---------Hhhc
Q 043250 252 SELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR---Q-IESLIGCLDE-LASGSRVIITTRDKQV---------LKTC 317 (507)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~ 317 (507)
+...+.+. -+|||||++... . .+.+...+.. ...+..+|+||+.... ...+
T Consensus 84 --------------~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 11122222 389999996432 1 2333322211 1233478888875421 1122
Q ss_pred CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 318 WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
.....+++.+++.++...++...+.... .....+..+.|++.+.|+|..+..+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2245789999999999999877552221 23446778889999999998887776543
No 24
>PLN03025 replication factor C subunit; Provisional
Probab=98.95 E-value=5.9e-08 Score=95.40 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=109.5
Q ss_pred ccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHH
Q 043250 167 STFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 167 ~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
...|..-..++|.+..++.|..++.. +..+.+.++|++|+||||+|..+++.+.. .|...+.-.+. +...+..
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~~~- 79 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRGID- 79 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cccccHH-
Confidence 34455557789999989989888763 33445789999999999999999997633 33322221111 1111221
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCch-hhHhhc-CCce
Q 043250 246 LQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDK-QVLKTC-WASQ 321 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~-~~~~ 321 (507)
..+............ ...++.-++|||+++.. ..-..+...+......+++++++... .+.+.. ....
T Consensus 80 ~vr~~i~~~~~~~~~--------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 80 VVRNKIKMFAQKKVT--------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHHHHHHhcccc--------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 122222111110000 00234669999999643 33344444443334566777666433 222211 2346
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 322 IYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 322 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
.+++.+++.++....+...+-... .....+....|++.++|..-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~eg--i~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEK--VPYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 789999999999999887763322 2233567889999999876443
No 25
>PRK04195 replication factor C large subunit; Provisional
Probab=98.94 E-value=4.7e-08 Score=101.50 Aligned_cols=191 Identities=16% Similarity=0.175 Sum_probs=115.5
Q ss_pred ccccccccCCccccccchHHHHHHhhhcC--CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCC
Q 043250 165 LDSTFQSENKGLVGVECPIEEIESLLCIG--SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGG 242 (507)
Q Consensus 165 l~~~~~~~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (507)
.....|.....++|.+..++.|.+|+..- ....+.+.|+|++|+||||+|..+++.+. ++ +...+. +....
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielna---sd~r~ 77 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNA---SDQRT 77 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcc---ccccc
Confidence 34444555678999999999999998642 12267899999999999999999999863 22 111111 11111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH------HHHHHHHcccCCCCCCcEEEEEeCchhh-H-
Q 043250 243 IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR------RQIESLIGCLDELASGSRVIITTRDKQV-L- 314 (507)
Q Consensus 243 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~~~~~~~~iliTtR~~~~-~- 314 (507)
......+........ .....++-+||||+++.. ..+..+...+. ..+..||+|+.+..- .
T Consensus 78 -~~~i~~~i~~~~~~~---------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 78 -ADVIERVAGEAATSG---------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred -HHHHHHHHHHhhccC---------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 122222222221110 011136789999999653 22455554443 234456666644321 1
Q ss_pred -hhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 315 -KTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 315 -~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
..-.....+++.+++..+....+...+..... ....+....|++.++|..-.+......+
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi--~i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGI--ECDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11124567899999999999988876633222 2346788999999999776554433333
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.92 E-value=6e-08 Score=96.46 Aligned_cols=198 Identities=15% Similarity=0.088 Sum_probs=111.0
Q ss_pred ccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc-cc-eEEEEechhhhccCCHHHH
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-EG-SYFALNVREAEETGGIKDL 246 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l 246 (507)
.|...+.++|++..++.|.+++.. +..+.+.++|++|+|||++|+.+++.+.... .. .+++. ....... ....+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~ 85 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYL 85 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhh
Confidence 344456789999999999998863 3344688999999999999999998765332 22 22222 2111000 00000
Q ss_pred HH--HHHHHHhcC--CC---CCCHHHHHHHH------cCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 247 QK--KLLSELLND--GN---RRNIESQLNRL------ARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 247 ~~--~l~~~~~~~--~~---~~~~~~l~~~l------~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
.. .+....... .. .+.++.+.+.. ...+-+||+||++.. .....+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00 000000000 00 11111111111 133458999999643 23334444333334556787777543
Q ss_pred h-hHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 312 Q-VLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 312 ~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
. +.... .....+++.+++.++...++...+.... .....+.+..+++.++|.+-.+...
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~--~~~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG--VDYDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22222 2346789999999999999988663222 1244678889999999987665443
No 27
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.92 E-value=7.9e-08 Score=94.80 Aligned_cols=188 Identities=14% Similarity=0.114 Sum_probs=110.0
Q ss_pred ccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHH
Q 043250 167 STFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 167 ~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 246 (507)
...|..-..++|++..++.+..++..+ ..+.+.|+|++|+|||++|+.+++.+........++. +. .+...... .
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~ 84 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-V 84 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-H
Confidence 334444467899999999999998642 3345799999999999999999987643221111221 10 01111111 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCchh-hHhh-cCCcee
Q 043250 247 QKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDKQ-VLKT-CWASQI 322 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~ 322 (507)
....+..+....+ .....+-++++|+++.. +....+...+....+.+.+|+++.... +... ......
T Consensus 85 ~~~~i~~~~~~~~---------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 85 IRNKIKEFARTAP---------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHHHHHHhcCC---------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1111111111000 00124568999998643 334445544444445567777664331 2111 113456
Q ss_pred EecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHH
Q 043250 323 YQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALK 370 (507)
Q Consensus 323 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 370 (507)
+++.+++.++...++...+.... .....+.+..+++.++|.+.-+.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~--~~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEG--IEITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 89999999999999887763322 22346778899999999886643
No 28
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.91 E-value=7.8e-08 Score=101.50 Aligned_cols=275 Identities=15% Similarity=0.107 Sum_probs=146.9
Q ss_pred ccCCccccccchHHHHHHhhhc---CCCCceEEEEeccccchhhHHHHHHHhhhccc-----cc--ceEEEEechhhhcc
Q 043250 171 SENKGLVGVECPIEEIESLLCI---GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-----FE--GSYFALNVREAEET 240 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~~~ 240 (507)
..|+.+.||+.|+++|...|.. +++...++.|+|++|+|||++++.+.+++... .+ ..+++. + ...
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-C---m~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-G---MNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-C---Ccc
Confidence 5678999999999999998865 23334567899999999999999999876432 12 133443 2 122
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC------HHHHHHHHc---CCcEEEEEcCCCCHH-----HHHHHHcccCCCCCCcEEEE
Q 043250 241 GGIKDLQKKLLSELLNDGNRRN------IESQLNRLA---RKKVLIVFDDVSHRR-----QIESLIGCLDELASGSRVII 306 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~------~~~l~~~l~---~~~~LlVlDdv~~~~-----~~~~l~~~l~~~~~~~~ili 306 (507)
.....++..+..++....+... ++.+...+. ....+||||+++... .+-.|..... ..+++|++
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 3455566666666643333211 122333331 234699999996432 1222222211 23455433
Q ss_pred --EeCchhh----HhhcC---CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHH----HhCCChHHHHHHH
Q 043250 307 --TTRDKQV----LKTCW---ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIK----YAQGVPLALKVLG 373 (507)
Q Consensus 307 --TtR~~~~----~~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~----~~~G~PLal~~~~ 373 (507)
+|.+... .+.+. ....+...|++.++..+++..++-... .....+....+++ ..|..=.||.++-
T Consensus 906 IGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~--gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK--EIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 3332111 11111 123467899999999999998874321 1122333333333 3344455555554
Q ss_pred hhhCC-----CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccCC-----CCCHHHHHH----HHHH
Q 043250 374 CHLCG-----RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLLE-----GTHRDYVIS----CLDA 439 (507)
Q Consensus 374 ~~l~~-----~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~~-----~~~~~~l~~----~~~~ 439 (507)
.++.. -..+....+...+. ...+......||..+|.+|..+..... .++...+.. +...
T Consensus 984 rAgEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~ 1056 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVET 1056 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHh
Confidence 44321 12223333332221 222445567899998888775544322 244333322 2221
Q ss_pred ----cCCC-----chhhHHHHhhCCceeeC
Q 043250 440 ----CGFE-----PKIELSVLECKSLINLD 460 (507)
Q Consensus 440 ----~~~~-----~~~~l~~L~~~sLi~~~ 460 (507)
-|.+ ....+.+|...|+|...
T Consensus 1057 ~Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1057 SGKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 1122 23357888999988865
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.91 E-value=2.4e-08 Score=89.92 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=102.2
Q ss_pred ccCCccccccchHHHHHHhhhc---CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCI---GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
..-++|||.+.-++.+.-++.. .......+.+||+||+||||||.-+++++...|. +.. .... ....++.
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i---~k~~dl~ 93 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAI---EKAGDLA 93 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC-----SCHHHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhh---hhHHHHH
Confidence 3457899999999887766543 2345678999999999999999999998876653 222 1001 1111221
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHcccCCC--------CCC-----------cEEEE
Q 043250 248 KKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVS--HRRQIESLIGCLDEL--------ASG-----------SRVII 306 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~--------~~~-----------~~ili 306 (507)
. + ...+ +++.+|++|++. +..+-+.|++....+ +++ +-|=.
T Consensus 94 ~-i----------------l~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 94 A-I----------------LTNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp H-H----------------HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred H-H----------------HHhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 1 1 1112 245688899995 344444455443211 111 22345
Q ss_pred EeCchhhHhhcC--CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhC
Q 043250 307 TTRDKQVLKTCW--ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLC 377 (507)
Q Consensus 307 TtR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~ 377 (507)
|||...+...+. ..-..+++..+.+|-.+.+.+.+.. ..-+...+.+.+|++++.|-|--..-+-..++
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 788765544332 2334689999999999999877632 22345578899999999999976655555443
No 30
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=5.1e-07 Score=89.60 Aligned_cols=197 Identities=13% Similarity=0.096 Sum_probs=113.1
Q ss_pred ccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc-ccc-cceEEEEechhhhccCCHHHH
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS-RHF-EGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f-~~~~~~~~~~~~~~~~~~~~l 246 (507)
.|.....++|.+...+.|.+.+..+ .-...+.++|+.|+||+++|..+++.+- +.. .............. .+....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChH
Confidence 3445578999999999999988743 2345688999999999999999998652 111 10000000000000 000001
Q ss_pred HHHHHHHHhc----------CC-----CCCCHHH---HHHHH-----cCCcEEEEEcCCC--CHHHHHHHHcccCCCCCC
Q 043250 247 QKKLLSELLN----------DG-----NRRNIES---QLNRL-----ARKKVLIVFDDVS--HRRQIESLIGCLDELASG 301 (507)
Q Consensus 247 ~~~l~~~~~~----------~~-----~~~~~~~---l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~ 301 (507)
.+.+...... +. ..-.+++ +.+.+ .+++.++|+|+++ +......|+..+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111100000 00 0012333 33333 2466799999995 445566676666544456
Q ss_pred cEEEEEeCchh-hHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 302 SRVIITTRDKQ-VLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 302 ~~iliTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
+.+|++|.+.. +.+. ......+.+.+++.++..+++..... . ...+....++..++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~--~----~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP--D----LPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc--c----CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 66777776653 3322 23467899999999999999977641 1 112223678999999998655543
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=2.2e-07 Score=96.00 Aligned_cols=188 Identities=14% Similarity=0.108 Sum_probs=112.5
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc--cccceEEEEechhhhc---cCCHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFALNVREAEE---TGGIKD 245 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~---~~~~~~ 245 (507)
..-+.++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...++.+....... ..++.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~- 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL- 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE-
Confidence 344678999999999998887432 3456799999999999999999987632 1222333221100000 00000
Q ss_pred HHHHHHHHHhcC--CCCCCHHHHHHHH-----cCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCc-hhhHh
Q 043250 246 LQKKLLSELLND--GNRRNIESQLNRL-----ARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRD-KQVLK 315 (507)
Q Consensus 246 l~~~l~~~~~~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~ 315 (507)
.+... ...+.+.++.+.+ .+++-++|||+++.. ..+..++..+......+.+|++|.. ..+..
T Consensus 89 -------el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 89 -------EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred -------EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 00000 0011122222222 245668999999643 4567777666544455555555543 33322
Q ss_pred hc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 316 TC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 316 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
.. .....+++.+++.++..+++...+-... .....+.+..|++.++|.+--+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg--i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEG--REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 3457899999999999999988763322 2234677899999999998655
No 32
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-06 Score=86.91 Aligned_cols=277 Identities=17% Similarity=0.146 Sum_probs=162.3
Q ss_pred cccCCccccccchHHHHHHhhhc--CCCCceEEEEeccccchhhHHHHHHHhhhcccccc--eEEEEechhhhccCCHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCI--GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFALNVREAEETGGIKD 245 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~ 245 (507)
...|+.+.+|+.+++++...|.+ ..+.+.-+.|+|.+|+|||+.++.+++++...... .+++. +.......+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHH
Confidence 34566799999999999998875 22233448999999999999999999988665433 45555 334567788
Q ss_pred HHHHHHHHHhcCCC-C----CCHHHHHHHHc--CCcEEEEEcCCCCHH-----HHHHHHcccCCCCCCcEE--EEEeCch
Q 043250 246 LQKKLLSELLNDGN-R----RNIESQLNRLA--RKKVLIVFDDVSHRR-----QIESLIGCLDELASGSRV--IITTRDK 311 (507)
Q Consensus 246 l~~~l~~~~~~~~~-~----~~~~~l~~~l~--~~~~LlVlDdv~~~~-----~~~~l~~~l~~~~~~~~i--liTtR~~ 311 (507)
++..++..+...+. . +..+.+.+.+. ++.+++|||+++... .+-.|....... .++| |..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 88888887753332 1 12223445543 478999999996432 233333332222 3443 3333333
Q ss_pred hhH--------hhcCCceeEecCCCChHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHHhCC-ChHHHHHHHhhh--C
Q 043250 312 QVL--------KTCWASQIYQMKELVYADAHKLFCQCAF---GGDHPDASHTELTDRAIKYAQG-VPLALKVLGCHL--C 377 (507)
Q Consensus 312 ~~~--------~~~~~~~~~~l~~L~~~ea~~L~~~~~~---~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~~l--~ 377 (507)
... ..++ ...+..+|-+.+|-.+.+..++- ......+..-+++..++...+| -=.||..+-... .
T Consensus 167 ~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 167 KFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 221 1222 23378999999999999988763 3333344444445555555554 334444432222 1
Q ss_pred C------CCHHHHHHHHHHHhCCCCchHHHHHHHhHhcCChhHHHHHhhccccCCCCCHHHHHHHHH----HcCC---Cc
Q 043250 378 G------RSKEEWESAMRKLEVIPHEEIQGVLKISYDSLDDSQKNVFLDIACLLEGTHRDYVISCLD----ACGF---EP 444 (507)
Q Consensus 378 ~------~~~~~~~~~l~~l~~~~~~~v~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~----~~~~---~~ 444 (507)
. .+.+.-..+.... -...+...+..||.+++..+..++....++....+-.... ..+. ..
T Consensus 246 e~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1 0111111111111 1233455688999999888887776645555555544332 2333 23
Q ss_pred hhhHHHHhhCCceeeC
Q 043250 445 KIELSVLECKSLINLD 460 (507)
Q Consensus 445 ~~~l~~L~~~sLi~~~ 460 (507)
...+..|...|++...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 3468889999998853
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.9e-07 Score=93.28 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=110.5
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc---------------------cceE
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSY 229 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~ 229 (507)
..-+.++|.+..++.+.+.+..+ .-...+.++|++|+||||+|+.+++.+.... ....
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 34467899999999999988643 2345678999999999999999998753211 0111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCCHH--HHHHHHcccCCCCCCc
Q 043250 230 FALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSHRR--QIESLIGCLDELASGS 302 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~ 302 (507)
.+. ......+ +.+..+.+.+ .+++-++|+|+++... ..+.++..+....+..
T Consensus 92 ~~~----~~~~~~v-----------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 92 EID----AASRTKV-----------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred Eec----ccccCCH-----------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 110 0000011 1112222222 2345699999997543 4566776665545566
Q ss_pred EEEEEeCch-hhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 303 RVIITTRDK-QVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 303 ~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
++|++|.+. .+... ......+++.+++.++..+.+...+-... .....+.+..|++.++|.|..+
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 677766544 33222 22457899999999999998887653222 2234567888999999988643
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=2.9e-07 Score=95.70 Aligned_cols=176 Identities=18% Similarity=0.133 Sum_probs=112.2
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc---------------------cce
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGS 228 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~ 228 (507)
|..-..++|.+...+.|.+++..+ .-...+.++|++|+||||+|+.+++.+-... ...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 334468999999999999999743 2356789999999999999999998653211 111
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-----HcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCC
Q 043250 229 YFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNR-----LARKKVLIVFDDVSHR--RQIESLIGCLDELASG 301 (507)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 301 (507)
+.+. ......+. .+..+... ..++.-++|||+++.. .....++..+.....+
T Consensus 90 iEID----AAs~~~Vd-----------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEID----AASRTKVE-----------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEec----ccccCCHH-----------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111 00001111 11112111 1346679999999643 4566676666544556
Q ss_pred cEEEEEeCchhhH--hhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 302 SRVIITTRDKQVL--KTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 302 ~~iliTtR~~~~~--~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
.++|++|.+..-. ........+++.+++.++..+.+...+-... .....+.+..|++.++|.+..+
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 6777777654322 1123567899999999999999887663222 2344677888999999987444
No 35
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=3.1e-07 Score=95.26 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=111.2
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc---ce-----EE-EEechhhhccC
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE---GS-----YF-ALNVREAEETG 241 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~-----~~-~~~~~~~~~~~ 241 (507)
...+.+||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+...-. .. |- ...+..+....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 34468999999999999998743 23456789999999999999999986532100 00 00 00000000000
Q ss_pred CHHHHHHHHHHHHhcC--CCCCCHHHHHHH-----HcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeC-ch
Q 043250 242 GIKDLQKKLLSELLND--GNRRNIESQLNR-----LARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTR-DK 311 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~--~~~~~~~~l~~~-----l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR-~~ 311 (507)
..+++ .+... ...+.+.++.+. ..++.-++|||+++. ....+.|+..+..-...+.+|++|. ..
T Consensus 92 -hpDvi-----EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 92 -FVDYI-----EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred -CCcce-----EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 00000 00000 001112222222 134567999999964 4567778777765455666555554 44
Q ss_pred hhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHH
Q 043250 312 QVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALK 370 (507)
Q Consensus 312 ~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 370 (507)
.+.... ..+..+.+..++.++..+.+...+.... .....+.+..|++.++|.|.-..
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 443222 2457899999999999998877653221 22335667889999999986443
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.3e-07 Score=101.26 Aligned_cols=185 Identities=16% Similarity=0.135 Sum_probs=113.3
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccc--eEEEEec-hh----------
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEG--SYFALNV-RE---------- 236 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~~~~~~-~~---------- 236 (507)
.....+||-+..++.|.+++..+ .-...+.++|++|+||||+|+.+++.+... ... .|..+.. ..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 34468999999999999988643 224556899999999999999999876432 100 0100000 00
Q ss_pred ---hhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 237 ---AEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 237 ---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
......+.. .+.+...+. ..-..++.-++|||+++ +......|+..+.......++|++|.+.
T Consensus 92 EidAas~~kVDd-IReLie~v~-----------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNVQ-----------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred EeccccccCHHH-HHHHHHHHH-----------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 000011111 111111110 01123567799999995 4456777777766545566666655443
Q ss_pred -hhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHH
Q 043250 312 -QVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALK 370 (507)
Q Consensus 312 -~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 370 (507)
.+... ...+..+++.+|+.++..+.+...+-.. ......+.+..|++.++|.|--+.
T Consensus 160 ~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 160 QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 33322 2346789999999999999998765321 123446778899999999886443
No 37
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.82 E-value=6e-08 Score=90.62 Aligned_cols=175 Identities=17% Similarity=0.154 Sum_probs=100.8
Q ss_pred ccCCccc-cccchH-HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH
Q 043250 171 SENKGLV-GVECPI-EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 171 ~~~~~~v-GR~~el-~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
...++|+ |...+. ..+.++.. .....+.+.|+|++|+|||+||..+++.....-....++.. .... .
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~~~---------~ 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-ASPL---------L 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HHhH---------H
Confidence 3345555 554444 34444443 22345678999999999999999999876443334444441 1110 0
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCC-CCCc-EEEEEeCchhhHh--------h
Q 043250 249 KLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDEL-ASGS-RVIITTRDKQVLK--------T 316 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~-~~~~-~iliTtR~~~~~~--------~ 316 (507)
.+ .. ....-+||+||++.. .....+...+... ..+. .+|+|++...... .
T Consensus 84 ~~-----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 84 AF-----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred HH-----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 00 01 123347889999533 2223333322211 2333 3666666432111 2
Q ss_pred cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 317 CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 317 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
+.....+++++++.++-..++....-.. .....++..+.+++.+.|++..+..+...+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~--~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAER--GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2224678999999988777776644221 123446788899999999999888777654
No 38
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.82 E-value=3.9e-08 Score=92.99 Aligned_cols=172 Identities=17% Similarity=0.323 Sum_probs=104.4
Q ss_pred CccccccchHHH---HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHH
Q 043250 174 KGLVGVECPIEE---IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 250 (507)
Q Consensus 174 ~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 250 (507)
+.+||.+..+.+ |.+++. .+..+.+.+||++|+||||||+.++..-+.+ ...|+..........++.+++++-
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEeccccchHHHHHHHHHH
Confidence 456666555433 333332 4567788999999999999999999865443 244554222222223333333322
Q ss_pred HHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCC--CCHHHHHHHHcccCCCCCCcEEEE--EeCchhh---HhhcCCceeE
Q 043250 251 LSELLNDGNRRNIESQLNRLARKKVLIVFDDV--SHRRQIESLIGCLDELASGSRVII--TTRDKQV---LKTCWASQIY 323 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv--~~~~~~~~l~~~l~~~~~~~~ili--TtR~~~~---~~~~~~~~~~ 323 (507)
-. ...+.++|.+|++|.+ .+..|-+.|++.. ..|.-++| ||.++.. ......+.++
T Consensus 214 q~--------------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 214 QN--------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVF 276 (554)
T ss_pred HH--------------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhcccee
Confidence 11 1345778999999999 4555556666654 35665555 6776643 2223457889
Q ss_pred ecCCCChHHHHHHHHHhhc--C-CC---CCCC-----ChHHHHHHHHHHhCCCh
Q 043250 324 QMKELVYADAHKLFCQCAF--G-GD---HPDA-----SHTELTDRAIKYAQGVP 366 (507)
Q Consensus 324 ~l~~L~~~ea~~L~~~~~~--~-~~---~~~~-----~~~~~~~~i~~~~~G~P 366 (507)
.|++|+.++...++.+..- + .. .+-+ ....+.+-++..|+|-.
T Consensus 277 vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 277 VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9999999999998877321 1 11 1111 23456677777788754
No 39
>PTZ00202 tuzin; Provisional
Probab=98.82 E-value=7.7e-07 Score=87.53 Aligned_cols=176 Identities=13% Similarity=0.097 Sum_probs=106.2
Q ss_pred HHHHHhhhhcccc------cccccCCccccccchHHHHHHhhhcCC-CCceEEEEeccccchhhHHHHHHHhhhcccccc
Q 043250 155 EEIANDVLKRLDS------TFQSENKGLVGVECPIEEIESLLCIGS-EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG 227 (507)
Q Consensus 155 ~~i~~~~~~~l~~------~~~~~~~~~vGR~~el~~l~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 227 (507)
...++.+.+..++ ..|..+..|+||+.++.+|...|...+ +..+++.|+|++|+|||||++.+..... .
T Consensus 237 ~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~ 312 (550)
T PTZ00202 237 KVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M 312 (550)
T ss_pred HHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c
Confidence 3344555544444 346678899999999999999997533 3456999999999999999999997653 2
Q ss_pred eEEEEechhhhccCCHHHHHHHHHHHHhcCCCCC---CHHHHHHHH-----c-CCcEEEEEc--CCCCHHH-HHHHHccc
Q 043250 228 SYFALNVREAEETGGIKDLQKKLLSELLNDGNRR---NIESQLNRL-----A-RKKVLIVFD--DVSHRRQ-IESLIGCL 295 (507)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~l~~~l-----~-~~~~LlVlD--dv~~~~~-~~~l~~~l 295 (507)
..++.+.. +..+++..++..++.+.... .++.+.+.+ . +++.+||+- +-.+..- ..+.. .+
T Consensus 313 ~qL~vNpr------g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~l 385 (550)
T PTZ00202 313 PAVFVDVR------GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-AL 385 (550)
T ss_pred eEEEECCC------CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HH
Confidence 24544332 56889999999988643311 222222222 2 566666653 2222211 11111 11
Q ss_pred CCCCCCcEEEEEeCchhhHhh---cCCceeEecCCCChHHHHHHHHHhh
Q 043250 296 DELASGSRVIITTRDKQVLKT---CWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 296 ~~~~~~~~iliTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
..-..-|+|++----+.+-.. +..-..|-+++++.++|.++.....
T Consensus 386 a~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 386 ACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111345667665443322111 1123568899999999998775543
No 40
>PRK08727 hypothetical protein; Validated
Probab=98.81 E-value=1.7e-07 Score=87.60 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=98.9
Q ss_pred CCccccccc-hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHH
Q 043250 173 NKGLVGVEC-PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 173 ~~~~vGR~~-el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
-++|++... .+..+..... ......+.|+|++|+|||+|+..+++........+.|+. ... ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~---------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA---------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH---------hhhhHH
Confidence 345665544 3333333332 122356999999999999999999998766555556664 111 111111
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----HHHHHHHcccCC-CCCCcEEEEEeCchhh---------Hhhc
Q 043250 252 SELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----RQIESLIGCLDE-LASGSRVIITTRDKQV---------LKTC 317 (507)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~ 317 (507)
...+.+. +.-+|||||+... ..-..+...+.. ...+..||+|++...- ...+
T Consensus 86 -------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 86 -------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred -------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 1111222 2348999999532 222223322221 1346679999985422 1222
Q ss_pred CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 318 WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
.....+++++++.++-.+++.+++.... -....+....|++.++|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 2356889999999999999998764322 2344677888888887665544
No 41
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=5.8e-07 Score=92.16 Aligned_cols=187 Identities=19% Similarity=0.131 Sum_probs=109.6
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc----c-----------------cce
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH----F-----------------EGS 228 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f-----------------~~~ 228 (507)
|..-+.++|.+...+.|...+..+ .-...+.++|++|+||||+|+.+++.+... + ...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 334467999998888888877632 224568899999999999999999865321 0 011
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEE
Q 043250 229 YFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVII 306 (507)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~ili 306 (507)
..+. .....++..+ +.+...... .-..+++-++|+|+++.. ...+.++..+........+|+
T Consensus 89 ~el~----aa~~~gid~i-R~i~~~~~~-----------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 89 IELD----AASNRGIDEI-RKIRDAVGY-----------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEEe----CcccCCHHHH-HHHHHHHhh-----------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1111 0001112111 111111100 012345679999999644 345666666554334444444
Q ss_pred EeCc-hhhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC-hHHHHHHHhh
Q 043250 307 TTRD-KQVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV-PLALKVLGCH 375 (507)
Q Consensus 307 TtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~~ 375 (507)
+|.+ ..+.+.. .....+++.+++.++....+...+.... .....+.+..|++.++|- +.++..+-..
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4443 3332222 2457899999999999998887763222 233467788899888654 6666666543
No 42
>PRK05642 DNA replication initiation factor; Validated
Probab=98.77 E-value=3e-07 Score=86.00 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=93.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
...+.|+|.+|+|||+|++.+++.+...-..++|+. ... +... ...+.+.+.+-. +
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~---------~~~~-------------~~~~~~~~~~~d-~ 100 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAE---------LLDR-------------GPELLDNLEQYE-L 100 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHH---------HHhh-------------hHHHHHhhhhCC-E
Confidence 356899999999999999999987765444566665 111 1110 012333333333 6
Q ss_pred EEEcCCCCH---HHH-HHHHcccCC-CCCCcEEEEEeCchhh---------HhhcCCceeEecCCCChHHHHHHHHHhhc
Q 043250 277 IVFDDVSHR---RQI-ESLIGCLDE-LASGSRVIITTRDKQV---------LKTCWASQIYQMKELVYADAHKLFCQCAF 342 (507)
Q Consensus 277 lVlDdv~~~---~~~-~~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 342 (507)
||+||+... ..+ +.+...+.. ...|..+|+|++.... ...+....++++++++.++-.+.+..++.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 789999522 222 223333321 1346678888875422 11122346789999999999999986663
Q ss_pred CCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 343 GGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 343 ~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
... -...++..+.|++.+.|-.-.+..+...|
T Consensus 181 ~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 181 RRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 322 22336778888888888766665554443
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.76 E-value=3.1e-07 Score=85.97 Aligned_cols=174 Identities=14% Similarity=0.130 Sum_probs=100.2
Q ss_pred Cccc-cccc-hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHH
Q 043250 174 KGLV-GVEC-PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 174 ~~~v-GR~~-el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
++|+ |-.. .+..+.++.. ....+.+.|+|++|+|||+|+..+++........+.|+. +.... ...
T Consensus 22 d~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~------~~~---- 88 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA------WFV---- 88 (235)
T ss_pred cccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh------hhh----
Confidence 3444 6332 2334444433 223457899999999999999999987665444455554 21100 000
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH---HHHH-HHHcccCCC-CCC-cEEEEEeCchhh---------Hhh
Q 043250 252 SELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR---RQIE-SLIGCLDEL-ASG-SRVIITTRDKQV---------LKT 316 (507)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~-~l~~~l~~~-~~~-~~iliTtR~~~~---------~~~ 316 (507)
..+.+.+.+ --+|+|||+... ..++ .+...+... ..| .++|+||+.+.. ...
T Consensus 89 ------------~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 89 ------------PEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASR 155 (235)
T ss_pred ------------HHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHH
Confidence 011112211 137899999542 2222 122222110 123 478999986522 222
Q ss_pred cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 317 CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 317 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
+....++++++++.++-.+.+.+++.... -...++....|++.+.|..-.+..+...
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 33457899999999999999987663322 2344678888999988877666555443
No 44
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=6.8e-07 Score=87.68 Aligned_cols=178 Identities=17% Similarity=0.245 Sum_probs=111.0
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-----cccceEEEEechhhhccCCHHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-----HFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
..++|-+...+.+..++..+ .-.....++|+.|+|||++|..+++.+.. .++....+... ......+.+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHH-HH
Confidence 45789888888899988633 23567789999999999999999986522 22222222211 001111222 11
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCchhhH-hh-cCCceeEe
Q 043250 249 KLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDKQVL-KT-CWASQIYQ 324 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~-~~-~~~~~~~~ 324 (507)
.+...+... -..+++-++|+|+++ +......++..+....+++.+|++|.+.... +. ...+..++
T Consensus 80 ~~~~~~~~~-----------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~ 148 (313)
T PRK05564 80 NIIEEVNKK-----------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYK 148 (313)
T ss_pred HHHHHHhcC-----------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeee
Confidence 222211110 012345567777764 5566788888887666788888888665432 21 12467899
Q ss_pred cCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 325 MKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 325 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
+.+++.++...++..... ....+.+..++..++|.|.-+...
T Consensus 149 ~~~~~~~~~~~~l~~~~~------~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 149 LNRLSKEEIEKFISYKYN------DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988866541 122455778899999988655433
No 45
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=1.1e-06 Score=89.71 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=111.3
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc---------------------cccce
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR---------------------HFEGS 228 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~ 228 (507)
|.....+||-+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+-- .+...
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 344578899999999998888633 22457899999999999999999875411 11122
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEE
Q 043250 229 YFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVII 306 (507)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~ili 306 (507)
+.+. .+...++.++. .+....... -..++.-++|+|+++. ....+.|+..+....+.+.+|+
T Consensus 88 ~eid----aas~~~vddIR-~Iie~~~~~-----------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 88 IEID----AASNTSVDDIK-VILENSCYL-----------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEEe----cccCCCHHHHH-HHHHHHHhc-----------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 2222 11111222211 111111000 0124566899999954 3456677766665456666666
Q ss_pred EeCc-hhhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 307 TTRD-KQVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 307 TtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
+|.+ ..+... ......+++.+++.++..+.+...+.... .....+.+..|++.++|.+..+
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 5543 333322 23467899999999999999988763322 2344677889999999988533
No 46
>PF14516 AAA_35: AAA-like domain
Probab=98.75 E-value=7.9e-06 Score=80.53 Aligned_cols=199 Identities=10% Similarity=0.112 Sum_probs=116.6
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc--cCCHHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE--TGGIKDLQ 247 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~ 247 (507)
+......|+|...-+++.+.+.. ....+.|.|+..+|||+|...+.+.....--.++++. +..... .......+
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHH
Confidence 34556678999666666666642 2457999999999999999999987765433344443 333222 23455555
Q ss_pred HHHHHHHhcCCC---------------CCCHHH-HHHH-H--cCCcEEEEEcCCCCHH----HHHHHHcccC-------C
Q 043250 248 KKLLSELLNDGN---------------RRNIES-QLNR-L--ARKKVLIVFDDVSHRR----QIESLIGCLD-------E 297 (507)
Q Consensus 248 ~~l~~~~~~~~~---------------~~~~~~-l~~~-l--~~~~~LlVlDdv~~~~----~~~~l~~~l~-------~ 297 (507)
..+...+...-. ...... +.+. + ..++++|+||+++..- ....++..+. .
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 555444432211 011111 2222 2 2589999999996432 1123332221 0
Q ss_pred CCC--CcEEEEEeCch-hhHh-----hcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 298 LAS--GSRVIITTRDK-QVLK-----TCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 298 ~~~--~~~iliTtR~~-~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
... .-++++....+ .... ..+....++|++++.+|+..|+..+... ......++|...+||+|..+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHH
Confidence 011 11222222111 1111 1123457899999999999999876521 22334899999999999999
Q ss_pred HHHHhhhCC
Q 043250 370 KVLGCHLCG 378 (507)
Q Consensus 370 ~~~~~~l~~ 378 (507)
..++..+..
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999999965
No 47
>PF13173 AAA_14: AAA domain
Probab=98.74 E-value=9.8e-08 Score=80.45 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=76.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
.+++.|.|+.|+|||||+.++++... .....+++. ...... ..... .+..+.+.+....++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~ 64 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD------RRLAD---------PDLLEYFLELIKPGKKY 64 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH------HHHhh---------hhhHHHHHHhhccCCcE
Confidence 36799999999999999999998765 223344443 211111 00000 00112233333347889
Q ss_pred EEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhc------CCceeEecCCCChHHH
Q 043250 277 IVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVLKTC------WASQIYQMKELVYADA 333 (507)
Q Consensus 277 lVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~------~~~~~~~l~~L~~~ea 333 (507)
++||++.....|...+..+....+..+|++|+........- +....+++.||+..|-
T Consensus 65 i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 65 IFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999988777777766665545678999999887665321 2334689999998773
No 48
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.74 E-value=3.3e-07 Score=84.65 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=101.6
Q ss_pred cccccchHH--HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc--ceEEEEechhhhccCCHHHHHHHHH
Q 043250 176 LVGVECPIE--EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 176 ~vGR~~el~--~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
++|-..+.. .+.............+.|+|+.|+|||.|.+++++.+....+ .++++. ..+....+.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~ 80 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFA 80 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHH
Confidence 357544432 233333322223456889999999999999999998765433 244443 223333333
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH---HHH-HHHHcccCC-CCCCcEEEEEeCchhh---------Hhhc
Q 043250 252 SELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR---RQI-ESLIGCLDE-LASGSRVIITTRDKQV---------LKTC 317 (507)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~~~~iliTtR~~~~---------~~~~ 317 (507)
..+.. .....+++.+++-. +|+|||++.. ..+ +.+...+.. ...|.+||+|++.... ...+
T Consensus 81 ~~~~~----~~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl 155 (219)
T PF00308_consen 81 DALRD----GEIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL 155 (219)
T ss_dssp HHHHT----TSHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH
T ss_pred HHHHc----ccchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH
Confidence 33322 34455666666444 7788999532 222 222222211 1356689999965421 2222
Q ss_pred CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 318 WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
...-.+++++++.++-.+++.+.+..... ...++.++.|++.+.+..-.|..+-..
T Consensus 156 ~~Gl~~~l~~pd~~~r~~il~~~a~~~~~--~l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 156 SWGLVVELQPPDDEDRRRILQKKAKERGI--ELPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred hhcchhhcCCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 34567999999999999999988743222 244677888888887766666555433
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.73 E-value=1.6e-06 Score=86.91 Aligned_cols=184 Identities=15% Similarity=0.119 Sum_probs=112.2
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc----c-----------------cceE
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH----F-----------------EGSY 229 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f-----------------~~~~ 229 (507)
..-..++|.+..++.|..++..+ .-...+.++|++|+|||++|..+++.+... + ...+
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 34467899999999999988643 234578899999999999999999865321 1 0111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEE
Q 043250 230 FALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIIT 307 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliT 307 (507)
++... ...... ..+++...+... -..+++-++|+|+++.. .....++..+....+.+.+|++
T Consensus 90 ~~~~~----~~~~~~-~~~~l~~~~~~~-----------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 90 EIDAA----SNNGVD-DIREILDNVKYA-----------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred Eeecc----ccCCHH-HHHHHHHHHhcC-----------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 11100 000111 111121111100 01234558999998644 4566666666544456666666
Q ss_pred eCchh-hHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 308 TRDKQ-VLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 308 tR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
|.+.. +.... .....+++.+++.++..+++...+-... .....+.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g--~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG--IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 65543 22221 2346789999999999999987663222 12335778899999999997665544
No 50
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=8.5e-07 Score=93.06 Aligned_cols=194 Identities=18% Similarity=0.149 Sum_probs=110.3
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccc---eEEEE-echhhhccCCHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG---SYFAL-NVREAEETGGIKD 245 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~~~~~~~~~ 245 (507)
|...+.++|.+..++.|..++..+ .-...+.++|++|+||||+|+.+++.+-..-.. .|-.+ .+...... ...+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g-~~~D 89 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG-RYVD 89 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhcc-Cccc
Confidence 334468999999999999998743 235578999999999999999999864221000 00000 00000000 0000
Q ss_pred HHHHHHHHHhcC--CCCCCHHHHHHH-----HcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCchh-hHh
Q 043250 246 LQKKLLSELLND--GNRRNIESQLNR-----LARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDKQ-VLK 315 (507)
Q Consensus 246 l~~~l~~~~~~~--~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~ 315 (507)
++ .+... ...+.+..+... ..+++-++|||+++.. .....|+..+......+++|++|.+.. +..
T Consensus 90 vl-----EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 90 LL-----EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred eE-----EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 00 00000 001112222221 1245679999999654 335556665544345666776665442 221
Q ss_pred h-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 316 T-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 316 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
. .+....+.+.+++.++..+.+...+-... .....+.+..|++.++|.+.-+..+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 1 12345688999999999999987663222 2334677889999999998544433
No 51
>PRK09087 hypothetical protein; Validated
Probab=98.72 E-value=5.6e-07 Score=83.45 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=90.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
.+.+.|+|++|+|||+|++.++.... ..++.. ..+...+...+ .+ -+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~----------------~~--~~ 90 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA----------------AE--GP 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh----------------hc--Ce
Confidence 46689999999999999999887532 224431 01111111111 11 27
Q ss_pred EEEcCCCC----HHHHHHHHcccCCCCCCcEEEEEeCch---------hhHhhcCCceeEecCCCChHHHHHHHHHhhcC
Q 043250 277 IVFDDVSH----RRQIESLIGCLDELASGSRVIITTRDK---------QVLKTCWASQIYQMKELVYADAHKLFCQCAFG 343 (507)
Q Consensus 277 lVlDdv~~----~~~~~~l~~~l~~~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 343 (507)
|++||+.. .+.+-.+...+. ..|..+|+|++.. .....+.....+++++++.++-.+++.+.+-.
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 88899943 233333333322 3467789988743 22333345578999999999999999888733
Q ss_pred CCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 344 GDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 344 ~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
. .-...++....|++.+.|..-.+..+...|
T Consensus 169 ~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 169 R--QLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred c--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 223447888899999888877776554433
No 52
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=1.5e-06 Score=89.44 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=111.0
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc-------ceEEEEe-chhhhc--
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE-------GSYFALN-VREAEE-- 239 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~-~~~~~~-- 239 (507)
|..-..++|-+.-++.|...+..+ .-...+.++|++|+||||+|+.+++.+-.... ..|..+. +.....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 444567899999999998877633 23467899999999999999999986532110 0000000 000000
Q ss_pred cCCHHHHHHHHHHHHhcCC--CCCCHHHHHHH-----HcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEE-EeC
Q 043250 240 TGGIKDLQKKLLSELLNDG--NRRNIESQLNR-----LARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVII-TTR 309 (507)
Q Consensus 240 ~~~~~~l~~~l~~~~~~~~--~~~~~~~l~~~-----l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~ili-TtR 309 (507)
..++. .+.... ..+.+..+.+. +.+++-++|+|+++. ...+..|+..+....+.+.+|+ ||+
T Consensus 96 h~Dv~--------eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 96 HPDII--------EIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred CCcEE--------EeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 00000 000000 01112222222 234667899999975 3456777766654445555554 555
Q ss_pred chhhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 310 DKQVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 310 ~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
...+.... .....+++.+++.++..+.+...+-... .....+.+..|++.++|.+.-+
T Consensus 168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 44443322 2456799999999999999988773322 2234567888999999987443
No 53
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.71 E-value=1.3e-07 Score=94.86 Aligned_cols=174 Identities=18% Similarity=0.235 Sum_probs=101.3
Q ss_pred cCCccccccchHHHHHHhhhcC-----------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 172 ENKGLVGVECPIEEIESLLCIG-----------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
....+.|++.++++|.+.+... -..++.+.|+|++|+|||+||+.+++.....|-.. . .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-~------ 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-G------ 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c-h------
Confidence 3457899999999998876421 12355699999999999999999999875543211 0 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH----------------HHHHHHHcccCCC--CCC
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR----------------RQIESLIGCLDEL--ASG 301 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~ 301 (507)
..+....... ....+..+.+.. ...+.+|+||+++.. ..+..++..+... ..+
T Consensus 190 ---~~l~~~~~g~-----~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 ---SELVRKYIGE-----GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred ---HHHHHHhhhH-----HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 0111111000 000111222222 346789999998643 1133333333211 246
Q ss_pred cEEEEEeCchhhHh-h----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 302 SRVIITTRDKQVLK-T----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 302 ~~iliTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
..||.||....... . ......+.++..+.++..++|..+......... .....+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 67888887543221 1 123567899999999999999887744332221 12466777777653
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=3.1e-06 Score=85.59 Aligned_cols=188 Identities=16% Similarity=0.147 Sum_probs=111.0
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc-c--eEEEEechhhhccCCHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE-G--SYFALNVREAEETGGIKDL 246 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~--~~~~~~~~~~~~~~~~~~l 246 (507)
|.....++|-+..+..|..++..+. -...+.++|++|+||||+|+.+++.+..... . .|..+ .....+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHH
Confidence 3444678999999999999887432 2346899999999999999999986533211 0 01000 000000
Q ss_pred HHHHHHH---Hhc--CCCCCCHHHHHHH-----HcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCc-hhh
Q 043250 247 QKKLLSE---LLN--DGNRRNIESQLNR-----LARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRD-KQV 313 (507)
Q Consensus 247 ~~~l~~~---~~~--~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~-~~~ 313 (507)
....... +.. ....+.+.++.+. ..++.-++|||+++. .+....|+..+........+|++|.+ ..+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0000000 000 0001112222222 234667999999964 45677777766543445555544443 333
Q ss_pred Hhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHH
Q 043250 314 LKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLA 368 (507)
Q Consensus 314 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 368 (507)
... ......+.+.+++.++..+.+...+-... .....+.+..|++.++|.+.-
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 222 23457799999999999998887663222 234467789999999999843
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.70 E-value=2e-06 Score=92.44 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=103.5
Q ss_pred ccCCccccccchHH---HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 171 SENKGLVGVECPIE---EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 171 ~~~~~~vGR~~el~---~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
..-+.|+|.+..+. .|.+.+.. +....+.|+|++|+||||||+.+++.....|. .+.. . ..++.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhhhHHH-
Confidence 33467899998874 46666653 34556889999999999999999987654441 1110 0 0111111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHH--cCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEE--eCchh--hHhh-cC
Q 043250 248 KKLLSELLNDGNRRNIESQLNRL--ARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIIT--TRDKQ--VLKT-CW 318 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliT--tR~~~--~~~~-~~ 318 (507)
...+. ...+.+ .+++.+|||||++ +..+.+.+++.+. .+..++|+ |.++. +... ..
T Consensus 94 r~~i~------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 94 RAEVD------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred HHHHH------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhc
Confidence 11111 111111 2467799999995 4455566665443 34444543 34431 1111 12
Q ss_pred CceeEecCCCChHHHHHHHHHhhcC-----CCCCCCChHHHHHHHHHHhCCChHHHH
Q 043250 319 ASQIYQMKELVYADAHKLFCQCAFG-----GDHPDASHTELTDRAIKYAQGVPLALK 370 (507)
Q Consensus 319 ~~~~~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~PLal~ 370 (507)
....+.+++|+.++...++....-. +........+....|++.+.|..--+.
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 3567999999999999999876531 012223456778899999999765443
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.7e-06 Score=89.66 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=109.6
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc---------------------ccce
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGS 228 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~ 228 (507)
|...+.+||-+.-++.|.+++..+ .-...+.++|++|+||||+|+.+++.+-.. +...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 334467999999999999999743 234567899999999999999999865211 1111
Q ss_pred EEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEE
Q 043250 229 YFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVII 306 (507)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~ili 306 (507)
+.+. ......+.++ +.+...+.- .-..++.-++|||+++. ......++..+....+.+++|+
T Consensus 91 ~eid----aas~~~v~~i-R~l~~~~~~-----------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 91 FEVD----AASRTKVEDT-RELLDNIPY-----------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEEc----ccccCCHHHH-HHHHHHHhh-----------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 1111 0011112111 111111100 00124556899999964 4556667666655455666666
Q ss_pred EeCch-hhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHH
Q 043250 307 TTRDK-QVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALK 370 (507)
Q Consensus 307 TtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 370 (507)
+|.+. .+... ......+++.+++.++....+...+-... .....+.+..|++.++|.+.-+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN--VEFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHH
Confidence 55443 33222 12356789999999998887766653222 22345667889999999885443
No 57
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.1e-06 Score=87.95 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=106.3
Q ss_pred CccccccchHHHHHHhhhcCCC--------CceEEEEeccccchhhHHHHHHHhhhccc--------------------c
Q 043250 174 KGLVGVECPIEEIESLLCIGSE--------GVCKLGIWGIGGIGKTTIAGAVFNKISRH--------------------F 225 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f 225 (507)
+.++|-+..++.|.+++..+.+ -...+.++|++|+|||++|..+++.+-.. +
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4678988888889988875321 35678899999999999999998854221 1
Q ss_pred cceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCCH--HHHHHHHcccCCC
Q 043250 226 EGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSHR--RQIESLIGCLDEL 298 (507)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~ 298 (507)
+...++..- .....+ +.+..+.+.+ .+++-++|+|+++.. .....++..+...
T Consensus 85 pD~~~i~~~---~~~i~i-----------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPE---GLSIGV-----------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEeccc---cccCCH-----------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 112222100 000111 1122222222 234558888999643 4445566665544
Q ss_pred CCCcEEEEEeCch-hhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 299 ASGSRVIITTRDK-QVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 299 ~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
.++..+|++|.+. .+.+.. .....+.+.+++.++..+.+.... ....+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-------~~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-------GVDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5566666666554 333332 346789999999999999886432 112456788999999999644333
No 58
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.68 E-value=1.4e-06 Score=78.68 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=94.4
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc---------------------ccceEEEEechhhhccCCH
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSYFALNVREAEETGGI 243 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 243 (507)
.|.+.+..+ .-...+.++|++|+|||++|..+++.+... ++...++.... .....
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~~~ 78 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSIKV 78 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcCCH
Confidence 344555422 234678999999999999999999876431 11222221000 00111
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCch-hhHhhc-CC
Q 043250 244 KDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDK-QVLKTC-WA 319 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~-~~ 319 (507)
+..+++...+... -..+.+-++|+||++.. +..+.++..+....+.+.+|++|++. .+.+.. ..
T Consensus 79 -~~i~~i~~~~~~~-----------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 79 -DQVRELVEFLSRT-----------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred -HHHHHHHHHHccC-----------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 1111111111100 01245668999999643 44666766665545566777777654 222221 24
Q ss_pred ceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH
Q 043250 320 SQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL 367 (507)
Q Consensus 320 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 367 (507)
...+++.+++.++..+.+.... ...+.+..+++.++|.|.
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~g--------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 147 CQVLPFPPLSEEALLQWLIRQG--------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred cEEeeCCCCCHHHHHHHHHHcC--------CCHHHHHHHHHHcCCCcc
Confidence 5689999999999999997761 225678999999999885
No 59
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=7.2e-07 Score=93.89 Aligned_cols=187 Identities=16% Similarity=0.145 Sum_probs=110.3
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 250 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 250 (507)
.....+||-+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+-...... .. ..+.-.....+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~--~~-------pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT--AT-------PCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC--CC-------CCCCCHHHHHH
Confidence 444789999999999999887432 245578999999999999999998653211000 00 00000000001
Q ss_pred HHH-------HhcC--CCCCCHHHHHHH-----HcCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCch-hh
Q 043250 251 LSE-------LLND--GNRRNIESQLNR-----LARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDK-QV 313 (507)
Q Consensus 251 ~~~-------~~~~--~~~~~~~~l~~~-----l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~-~~ 313 (507)
... +... ...+.+..+.+. ..++.-++|||+++ +......|+..+.......++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 000 0000 001112222222 24566799999996 4456677777665544556665555444 33
Q ss_pred Hhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 314 LKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 314 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
... ...+..+.+.+|+.++..+.+....-... .....+....|++.++|.+--.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 322 23467899999999999999877652221 2234566788999999988643
No 60
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=2e-06 Score=84.95 Aligned_cols=192 Identities=19% Similarity=0.175 Sum_probs=114.0
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc----ccceEEEEechhhhccCCHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH----FEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 245 (507)
|.....++|-+...+.|...+..+ .....+.|+|+.|+||||+|..+++.+... +....... ..+...
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCCCCH
Confidence 455678999999999999998743 235578899999999999999999876432 11110000 000001
Q ss_pred HHHHHHHH-------Hhc---CC-----C---CCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCC
Q 043250 246 LQKKLLSE-------LLN---DG-----N---RRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELAS 300 (507)
Q Consensus 246 l~~~l~~~-------~~~---~~-----~---~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~ 300 (507)
....+... +.. .. . .+.+..+.+.+ .++.-++|+|+++. ....+.++..+.....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 11111111 000 00 0 11222233333 24567999999964 4455666666554344
Q ss_pred CcEEEEEe-CchhhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 301 GSRVIITT-RDKQVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 301 ~~~iliTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
...+|++| +...+.+.. .....+++.+++.++..+++...... .. ...+.+..+++.++|.|.....+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc---cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544444 443333222 24578999999999999999874321 11 335567889999999998655443
No 61
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=2.9e-06 Score=89.20 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=110.0
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc-c--ceEEEEechhhhccCCHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-E--GSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~--~~~~~~~~~~~~~~~~~~~l~ 247 (507)
...+.+||-+.-++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-..- + .+.-.. ..+.-...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~-------pCg~C~~C 84 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT-------PCGVCQAC 84 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC-------CCCccHHH
Confidence 34467899888888999988743 2356778999999999999999988652110 0 000000 00000000
Q ss_pred HHHHH-------HHhcCCCCCCHHH---HHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCc
Q 043250 248 KKLLS-------ELLNDGNRRNIES---QLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRD 310 (507)
Q Consensus 248 ~~l~~-------~~~~~~~~~~~~~---l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~ 310 (507)
..+.. .+.. .....++. +.+.. .++.-++|||+++. ......++..+......+.+|++|.+
T Consensus 85 ~~i~~g~h~D~~elda-as~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 85 RDIDSGRFVDYTELDA-ASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHcCCCCceeecCc-ccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 00000 0000 00112222 22222 23455899999964 45566777766554455566655543
Q ss_pred -hhhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHH
Q 043250 311 -KQVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKV 371 (507)
Q Consensus 311 -~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 371 (507)
..+... ......+++++++.++..+.+...+.... .....+.+..|++.++|.+.-+..
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg--i~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN--VPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 333322 23467899999999999999987663222 223456788899999998754433
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.5e-06 Score=90.06 Aligned_cols=183 Identities=17% Similarity=0.162 Sum_probs=110.7
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc---------------------ccceE
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSY 229 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~ 229 (507)
..-..++|-+..++.|...+..+ .....+.++|++|+||||+|+.+++.+... |...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34467899999999999988643 234567899999999999999999865321 11111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEE-
Q 043250 230 FALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVII- 306 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~ili- 306 (507)
.+. .....++.++ +.+...+. ..-..+++-++|+|+++. ....+.|+..+......+.+|+
T Consensus 92 eid----aas~~gvd~i-r~ii~~~~-----------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 92 EID----AASRTGVEET-KEILDNIQ-----------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred Eee----cccccCHHHH-HHHHHHHH-----------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111 0001111111 11111110 001234667999999963 4556677776665445565654
Q ss_pred EeCchhhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH-HHHHH
Q 043250 307 TTRDKQVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL-ALKVL 372 (507)
Q Consensus 307 TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 372 (507)
||....+... ......+++.+++.++..+.+...+-... .....+.+..|++.++|.+. ++..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4443333322 23467899999999999988877552211 23446677889999999764 44444
No 63
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.66 E-value=7.3e-07 Score=91.21 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=101.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccc--cceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKK 274 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 274 (507)
...+.|+|.+|+|||+|++.+++.+.... ..++++. ..++...+...+... ...++.+.+.++. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~--~~~~~~~~~~~~~-~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKT--HKEIEQFKNEICQ-N 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHh--hhHHHHHHHHhcc-C
Confidence 34688999999999999999999765432 2233333 223333443333221 1223344444443 4
Q ss_pred EEEEEcCCCCH----HHHHHHHcccCC-CCCCcEEEEEeCchh-hH--------hhcCCceeEecCCCChHHHHHHHHHh
Q 043250 275 VLIVFDDVSHR----RQIESLIGCLDE-LASGSRVIITTRDKQ-VL--------KTCWASQIYQMKELVYADAHKLFCQC 340 (507)
Q Consensus 275 ~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iliTtR~~~-~~--------~~~~~~~~~~l~~L~~~ea~~L~~~~ 340 (507)
-+|||||+... ...+.+...+.. ...+..||+|+.... .. ..+...-.+.+++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 47889999432 222333332221 134456888875432 22 22234557889999999999999888
Q ss_pred hcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 341 AFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
+-.........++.+..|++.++|.|-.+.-+...+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 743221123557889999999999998887776444
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.65 E-value=3.2e-07 Score=78.87 Aligned_cols=123 Identities=21% Similarity=0.150 Sum_probs=69.8
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhc
Q 043250 177 VGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLN 256 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 256 (507)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.+.......+++. ....... ..........
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~---~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG---LVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh---hHHHHHhhhh---
Confidence 47888899998888632 3467899999999999999999998754333344443 2221111 0000000000
Q ss_pred CCCCCCHHHHHHHHcCCcEEEEEcCCCCH--H---HHHHHHcccCCC---CCCcEEEEEeCchh
Q 043250 257 DGNRRNIESQLNRLARKKVLIVFDDVSHR--R---QIESLIGCLDEL---ASGSRVIITTRDKQ 312 (507)
Q Consensus 257 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~---~~~~l~~~l~~~---~~~~~iliTtR~~~ 312 (507)
............++.++|+||++.. . .+..++...... ..+..+|+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000011223456789999999853 2 233333332221 35778888887653
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.64 E-value=1.6e-07 Score=91.14 Aligned_cols=89 Identities=30% Similarity=0.565 Sum_probs=71.9
Q ss_pred ccEEEcCccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecCCCcCc--------hhh
Q 043250 2 YDVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQRYASS--------RWC 72 (507)
Q Consensus 2 ~dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s--------~~c 72 (507)
.||||||+.. +....++.+.-.|.-+|++||+|- .+..|+ +.+.+.+.|..++.+|.|+||+.... .|.
T Consensus 613 ~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWV 690 (832)
T KOG3678|consen 613 IDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWV 690 (832)
T ss_pred cceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHH
Confidence 6999999765 345688888888899999999998 777776 66889999999999999999987542 466
Q ss_pred HHHHHHHHHHHHhCCCeEEeEEEE
Q 043250 73 LDELLKILECKHNYGQIVIPVFYH 96 (507)
Q Consensus 73 ~~El~~~~~~~~~~~~~v~pv~~~ 96 (507)
..|+..++++. ..|+|||-.
T Consensus 691 HKEl~~Afe~~----KNIiPI~D~ 710 (832)
T KOG3678|consen 691 HKELKCAFEHQ----KNIIPIFDT 710 (832)
T ss_pred HHHHHHHHHhc----CCeeeeecc
Confidence 67777777655 459999843
No 66
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=4.1e-06 Score=87.08 Aligned_cols=193 Identities=17% Similarity=0.124 Sum_probs=109.3
Q ss_pred ccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH
Q 043250 169 FQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
.|..-..++|++..++.|.+++..+ ...+.+.++|++|+||||+|+.+++.+...- |.. .... +-.....
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~~C----g~C~sCr 80 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GDCC----NSCSVCE 80 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CCCC----cccHHHH
Confidence 3445578999999999999988643 2346788999999999999999998753210 000 0000 0000000
Q ss_pred HHHHH-------HhcCC--CCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEe-Cch
Q 043250 249 KLLSE-------LLNDG--NRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITT-RDK 311 (507)
Q Consensus 249 ~l~~~-------~~~~~--~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTt-R~~ 311 (507)
.+... +.... ..+.++.+.+.. .+++-++|+|+++. ......|+..+......+.+|++| ...
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 00000 00000 011112222211 12344799999964 345566666554434455555544 433
Q ss_pred hhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH-HHHHHH
Q 043250 312 QVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL-ALKVLG 373 (507)
Q Consensus 312 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~ 373 (507)
.+... ......+++.+++.++....+...+-... .....+.+..+++.++|.+. |+..+-
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--IKIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33322 23457899999999999998887653221 12335668899999999765 444443
No 67
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.7e-06 Score=87.50 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=111.0
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc--ccceEEEEechhhhccCCHHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
|.....++|.+.-.+.|.+++..+ .-...+.++|++|+||||+|..+++.+... +...-|...... + -+.-...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~--~-c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE--P-CGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC--C-CCCCHHH
Confidence 334468899999899999888633 224458899999999999999999866321 100000000000 0 0000000
Q ss_pred HHHHHH-------HhcCC--CCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEe-Cc
Q 043250 248 KKLLSE-------LLNDG--NRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITT-RD 310 (507)
Q Consensus 248 ~~l~~~-------~~~~~--~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTt-R~ 310 (507)
..+... +.+.. ..+.+.++.+.+ .+.+-++|+|+++. ...++.++..+....+.+.+|++| +.
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 000000 00000 011222233333 23556889999964 345666776665544566665555 43
Q ss_pred hhhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHH
Q 043250 311 KQVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKV 371 (507)
Q Consensus 311 ~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 371 (507)
..+.... .....+++.+++.++..+.+...+-.. ......+.+..+++.++|.+--+..
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3333221 134578999999999998887765221 2234467889999999998854433
No 68
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=3.6e-06 Score=91.58 Aligned_cols=191 Identities=14% Similarity=0.104 Sum_probs=109.5
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc--c-eEEEE-echhhhcc-CCHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE--G-SYFAL-NVREAEET-GGIKD 245 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~-~~~~~~~~-~~~~~ 245 (507)
.....+||.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+..... . .|=.+ .+..+... ....+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 34467899999999999998743 23456789999999999999999986531100 0 00000 00000000 00000
Q ss_pred HHHHHHHHHhcC--CCCCCHHHHHHH-----HcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeC-chhhHh
Q 043250 246 LQKKLLSELLND--GNRRNIESQLNR-----LARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTR-DKQVLK 315 (507)
Q Consensus 246 l~~~l~~~~~~~--~~~~~~~~l~~~-----l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR-~~~~~~ 315 (507)
+. .+... ...+.+..+.+. ..++.-++|||+++. ....+.|+..+......+.+|++|. ...+..
T Consensus 91 v~-----eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 91 VT-----EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred EE-----EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00 00000 001112222221 234566889999964 4556667776665455666665554 334443
Q ss_pred hc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 316 TC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 316 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
.. .....|++.+++.++..+++....-... .....+.+..|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 3467899999999999988877652222 2234566788999999988433
No 69
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=6.1e-06 Score=86.92 Aligned_cols=193 Identities=14% Similarity=0.129 Sum_probs=113.3
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccc---eEEEEechhhhccCCHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG---SYFALNVREAEETGGIKDL 246 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~l 246 (507)
|.....++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+...... ..-+.... .-.-
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg-------~c~~ 91 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG-------VGEH 91 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc-------ccHH
Confidence 344568999999999999998743 234578899999999999999999865322110 00000000 0000
Q ss_pred HHHHHHHHh-------cC--CCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEe-C
Q 043250 247 QKKLLSELL-------ND--GNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITT-R 309 (507)
Q Consensus 247 ~~~l~~~~~-------~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTt-R 309 (507)
...+..... .. ...+.+.++.+.+ .+++-++|+|+++. ....+.|+..+....+.+.+|++| .
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 011110000 00 0011222232222 23456899999954 345666766665445566665544 4
Q ss_pred chhhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 310 DKQVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 310 ~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
...+.... .....+++.+++.++....+...+-.. ......+.+..|++.++|.+.-+...
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke--gi~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE--GVEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44433322 245789999999999999998876322 22234577889999999998655443
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.3e-06 Score=84.05 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=107.6
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc--------ccceEEEEechhhhccCC
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH--------FEGSYFALNVREAEETGG 242 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 242 (507)
..-+.++|.+..++.+.+.+..+ .-.+.+.++|++|+|||++|..+++.+... |...++-. .. .....
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccCCC
Confidence 34467899999999999998642 235678899999999999999998875431 22112111 00 00111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEe-CchhhHhh-cC
Q 043250 243 IKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITT-RDKQVLKT-CW 318 (507)
Q Consensus 243 ~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTt-R~~~~~~~-~~ 318 (507)
+.. ...+...+... -..+++-++++|+++.. ..+..++..+......+.+|+++ ....+.+. ..
T Consensus 90 ~~~-i~~l~~~~~~~-----------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 90 VDD-IRNLIDQVRIP-----------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHH-HHHHHHHHhhc-----------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 111 11222111000 01234568999999643 34666655554333445555555 33333222 22
Q ss_pred CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 319 ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 319 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
....+++.+++.++....+...+..... ....+.+..+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 4567899999999999888876633221 234577889999999977644
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.4e-05 Score=83.88 Aligned_cols=190 Identities=17% Similarity=0.145 Sum_probs=109.0
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc-cc--eEEEE-echhhhcc-CCHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-EG--SYFAL-NVREAEET-GGIK 244 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~--~~~~~-~~~~~~~~-~~~~ 244 (507)
|..-+.++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+.... .. .|=.+ .+...... ....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 334468899999999999998743 2345678999999999999999998653211 00 00000 00000000 0000
Q ss_pred HHHHHHHHHHhcC--CCCCCHHHHHHHH-----cCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEe-CchhhH
Q 043250 245 DLQKKLLSELLND--GNRRNIESQLNRL-----ARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITT-RDKQVL 314 (507)
Q Consensus 245 ~l~~~l~~~~~~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTt-R~~~~~ 314 (507)
++. .+... ...+.+.++.+.+ .+++-++|+|+++ +....+.|+..+......+.+|++| ....+.
T Consensus 88 dvi-----eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 88 DVV-----ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred eEE-----EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 000 00000 0011122222221 3456689999995 4455667777666545566655544 444443
Q ss_pred hh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH
Q 043250 315 KT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL 367 (507)
Q Consensus 315 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 367 (507)
.. ......+++.+++.++..+++...+.... .....+.+..|++.++|.+-
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEG--VVVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 32 23467899999999999988877663222 22335677888999999874
No 72
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.56 E-value=1.1e-06 Score=88.57 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=98.4
Q ss_pred cCCccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 172 ENKGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
..+.+.|++.++++|.+.+.. +-..++.|.|+|++|+|||++|+.++++....| .......
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~----i~v~~~~---- 200 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF----IRVVGSE---- 200 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE----EEeehHH----
Confidence 345788999999999886632 113356789999999999999999999765332 1111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH-------------HH---HHHHHcccCCC--CCC
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR-------------RQ---IESLIGCLDEL--ASG 301 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~---~~~l~~~l~~~--~~~ 301 (507)
+.... .+. ....+..+.+.. ...+.+|+||+++.. .. +..++..+... ..+
T Consensus 201 -----l~~~~----~g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 201 -----LVQKF----IGE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred -----HhHhh----ccc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 11100 000 001111122222 346789999999653 11 22333222211 235
Q ss_pred cEEEEEeCchhhHhh-c----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 302 SRVIITTRDKQVLKT-C----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 302 ~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
..||.||........ + .....+++++.+.++-.++|..+..+...... .....+++.+.|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 567777765433221 1 23467999999999999999887643322211 1145566666664
No 73
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=8.3e-06 Score=85.29 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=112.2
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc---------------------cceE
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSY 229 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~ 229 (507)
...+.++|-+..++.|.+.+..+ .-...+.++|++|+||||+|+.+++.+.... ...+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34467899888888888888632 2256788999999999999999998653210 0111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-----HcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCc
Q 043250 230 FALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNR-----LARKKVLIVFDDVSH--RRQIESLIGCLDELASGS 302 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~ 302 (507)
++.. .....+. .++.+.+. ..+++-++|||+++. ......|+..+.......
T Consensus 92 eId~----a~~~~Id-----------------~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 92 EIDG----ASNRGID-----------------DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARV 150 (624)
T ss_pred EEec----ccccCHH-----------------HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCE
Confidence 1110 0001111 11112111 234667999999964 355666766665433455
Q ss_pred EEEEEeCc-hhhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh-HHHHHHHhhh
Q 043250 303 RVIITTRD-KQVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP-LALKVLGCHL 376 (507)
Q Consensus 303 ~iliTtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~l 376 (507)
.+|++|.+ ..+... ......+++.+++.++....+...+.... .....+.+..|++.++|.+ .++..+...+
T Consensus 151 ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 151 TFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56665544 333322 22356789999999999998877653222 2234677889999999965 5777665443
No 74
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=7.2e-06 Score=86.56 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=108.7
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc--ccceEEEEechhhhccCCHHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
|.....++|-+..++.|.+.+..+ .-...+.++|++|+||||+|..+++.+-.. .....|...... .-+.-...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence 334478999999999999988632 234568899999999999999999865321 110111110000 00000000
Q ss_pred HHHHHH-------HhcCC--CCCCHHHHHHHH-----cCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEe-Cc
Q 043250 248 KKLLSE-------LLNDG--NRRNIESQLNRL-----ARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITT-RD 310 (507)
Q Consensus 248 ~~l~~~-------~~~~~--~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTt-R~ 310 (507)
..+... +.+.. ..+.+..+.+.+ .+.+-++|+|+++.. ...+.|+..+....+.+.+|++| +.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 000000 00000 011222222222 234558899999643 44666776665444455555444 43
Q ss_pred hhhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH
Q 043250 311 KQVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL 367 (507)
Q Consensus 311 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 367 (507)
..+... ......+++.+++.++....+...+-... .....+.+..+++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHH
Confidence 444332 23567899999999999988877553211 22346778899999999665
No 75
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.55 E-value=8.9e-07 Score=87.17 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=91.8
Q ss_pred hhcccccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC
Q 043250 162 LKRLDSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG 241 (507)
Q Consensus 162 ~~~l~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (507)
..+.....|...+.++|.+...+.+..++..+ .-...+.++|++|+|||++|..+++..... ...+. ... .
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~-~~~----~ 79 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN-GSD----C 79 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec-cCc----c
Confidence 34445555666688999999999999998742 235677789999999999999999876322 12222 111 1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH---HHHHHHHcccCCCCCCcEEEEEeCchhhH-hhc
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR---RQIESLIGCLDELASGSRVIITTRDKQVL-KTC 317 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~iliTtR~~~~~-~~~ 317 (507)
.... ....+...... ..+...+-++|+|+++.. +....+...+.....++++|+||...... +..
T Consensus 80 ~~~~-i~~~l~~~~~~----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 80 RIDF-VRNRLTRFAST----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred cHHH-HHHHHHHHHHh----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 1111 11111111000 001234568999999644 22233333333335677888888654321 111
Q ss_pred -CCceeEecCCCChHHHHHHHHH
Q 043250 318 -WASQIYQMKELVYADAHKLFCQ 339 (507)
Q Consensus 318 -~~~~~~~l~~L~~~ea~~L~~~ 339 (507)
.....+.++..+.++..+++..
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHHH
Confidence 2345678888888887766543
No 76
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.3e-06 Score=89.30 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=106.9
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc---------------------cceE
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSY 229 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~ 229 (507)
.....++|-+.-++.|..++..+ .-...+.++|++|+||||+|+.+++.+.... ...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 34467899999999999988742 2245678999999999999999998653211 1111
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCc
Q 043250 230 FALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSHR--RQIESLIGCLDELASGS 302 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~ 302 (507)
.+. ......+ +.+..+.+.. .+++-++|+|+++.. .....++..+......+
T Consensus 92 ei~----~~~~~~v-----------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 92 EVD----AASNTQV-----------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred Eee----ccccCCH-----------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 111 0000111 1111222221 345679999999744 44666776666544556
Q ss_pred EEEEEeCch-hhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH
Q 043250 303 RVIITTRDK-QVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL 367 (507)
Q Consensus 303 ~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 367 (507)
.+|++|.++ .+... ......+++.+++.++..+.+...+-... .....+.+..|++.++|.+.
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 666555443 33221 12356789999999999988877553222 22345667889999999875
No 77
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2.9e-05 Score=80.13 Aligned_cols=193 Identities=15% Similarity=0.097 Sum_probs=109.5
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-----ccceEEEEechhhhccCCHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-----FEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 245 (507)
..-..++|-+.-++.|.+++..+ .-...+.++|++|+||||+|+.++..+... .++.. ..++...... ...+
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g-~~~d 89 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKG-SFPD 89 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcC-CCCc
Confidence 34467899999999999999743 234567899999999999999999865311 01100 0000000000 0000
Q ss_pred HHHHHHHHHhcC--CCCCCHHHHHHHH-----cCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEe-CchhhHh
Q 043250 246 LQKKLLSELLND--GNRRNIESQLNRL-----ARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITT-RDKQVLK 315 (507)
Q Consensus 246 l~~~l~~~~~~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTt-R~~~~~~ 315 (507)
+. .+... ...+.++.+.+.. .+++-++|+|+++.. ...+.++..+....+...+|++| +...+..
T Consensus 90 ~~-----eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~ 164 (486)
T PRK14953 90 LI-----EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPP 164 (486)
T ss_pred EE-----EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHH
Confidence 00 00000 0011122222222 345669999999643 44566666655434455555544 4333332
Q ss_pred h-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 316 T-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 316 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
. ......+++.+++.++....+...+-... .....+.+..+++.++|.+..+....
T Consensus 165 tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 165 TILSRCQRFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 22456799999999999998887663222 23345778889999999876554443
No 78
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=7.8e-07 Score=75.22 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=69.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc-----ccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC-CCHHH----H
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH-----FEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNR-RNIES----Q 266 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~----l 266 (507)
.+.+.|+|++|+|||+++..+++.+... -...+|+. .........+...++..+...... ..... +
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4678999999999999999999876542 23445554 333447888888888888766553 33333 4
Q ss_pred HHHHcCC-cEEEEEcCCCCH---HHHHHHHcccCCCCCCcEEEEEeCc
Q 043250 267 LNRLARK-KVLIVFDDVSHR---RQIESLIGCLDELASGSRVIITTRD 310 (507)
Q Consensus 267 ~~~l~~~-~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~iliTtR~ 310 (507)
.+.+.+. ..+||+|+++.. ..++.+..... ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5555544 459999999654 33444433333 667778877765
No 79
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1e-05 Score=85.85 Aligned_cols=193 Identities=15% Similarity=0.138 Sum_probs=112.2
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 250 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 250 (507)
...+.++|-+..++.|..++..+ .-...+.++|++|+||||+|+.+++.+.......-.- ..+.......+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~--------~c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR--------PCGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCccCHHHHHH
Confidence 34468999999999999888643 2345678999999999999999998653211000000 00000111111
Q ss_pred HHHHhc------CCC---CCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCc-hhh
Q 043250 251 LSELLN------DGN---RRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRD-KQV 313 (507)
Q Consensus 251 ~~~~~~------~~~---~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~-~~~ 313 (507)
...... ... .+.+.++.+.+ .+++-++|||+++. .+..+.|+..+......+.+|+++.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 111000 000 11122222222 23566899999963 35566777666544455666665543 333
Q ss_pred Hhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHh
Q 043250 314 LKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGC 374 (507)
Q Consensus 314 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 374 (507)
... ......+++.+++..+....+...+.... .....+.+..|++.++|.+..+.....
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~eg--l~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEG--INLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 322 12356789999999999988877663322 223457788999999999975554433
No 80
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.53 E-value=3.8e-06 Score=85.51 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=104.2
Q ss_pred cccccchHH--HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc--ceEEEEechhhhccCCHHHHHHHHH
Q 043250 176 LVGVECPIE--EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 176 ~vGR~~el~--~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
++|....+. .+.++..........+.|+|++|+|||+|++.+++.+....+ .++++. . .++...+.
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~ 182 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFV 182 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHH
Confidence 457655432 223333221222356889999999999999999998766542 233443 1 12222333
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH----HHHHHHcccCC-CCCCcEEEEEeCch-hhH--------hhc
Q 043250 252 SELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR----QIESLIGCLDE-LASGSRVIITTRDK-QVL--------KTC 317 (507)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iliTtR~~-~~~--------~~~ 317 (507)
..+.. .....+.+.+.+ .-+|+|||++... ..+.++..+.. ...+..+|+|+... ... ..+
T Consensus 183 ~~~~~----~~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl 257 (405)
T TIGR00362 183 NALRN----NKMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRF 257 (405)
T ss_pred HHHHc----CCHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhc
Confidence 33321 123444455543 3488899995321 11223322211 12345678877643 211 122
Q ss_pred CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHh
Q 043250 318 WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGC 374 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 374 (507)
.....+.+++.+.++-.+++...+... .....++.+..|++.+.|.+-.|.-+..
T Consensus 258 ~~g~~v~i~~pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~r~l~~~l~ 312 (405)
T TIGR00362 258 EWGLVVDIEPPDLETRLAILQKKAEEE--GLELPDEVLEFIAKNIRSNVRELEGALN 312 (405)
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 234578999999999999998887432 2334468888999999988776555443
No 81
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=2.3e-05 Score=81.02 Aligned_cols=185 Identities=16% Similarity=0.152 Sum_probs=111.5
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-ccc-------------------ceE
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFE-------------------GSY 229 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~-------------------~~~ 229 (507)
|..-+.++|-+.-.+.|...+..+ .-...+.++|++|+||||+|+.+++.+.. ... ..+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 344467999998899999988643 23556789999999999999999986521 111 001
Q ss_pred EEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEE
Q 043250 230 FALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIIT 307 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliT 307 (507)
+..+ .....++..+.. +...... .-..+++-++|+|+++. .+....|+..+....+.+++|++
T Consensus 89 ~eld---aas~~gId~IRe-lie~~~~-----------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 89 IEMD---AASNRGIDDIRE-LIEQTKY-----------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred EEec---cccccCHHHHHH-HHHHHhh-----------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 1100 000011111111 1111000 00113456889999964 44566676666554566777776
Q ss_pred eCchh-hHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 308 TRDKQ-VLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 308 tR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
|.+.. +.+. ......+++.+++.++..+.+...+-... .....+.+..|++.++|.+.-+..+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 66542 2211 12457899999999999999877663222 2234677889999999998554444
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.52 E-value=3.6e-06 Score=86.82 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=105.6
Q ss_pred cccccchH--HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccc--eEEEEechhhhccCCHHHHHHHHH
Q 043250 176 LVGVECPI--EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 176 ~vGR~~el--~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
++|..... ..+.++..........+.|+|++|+|||+|++.+++.+...++. ++++. . .++...+.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHH
Confidence 45655542 23333333222234568999999999999999999988766432 33433 1 12222232
Q ss_pred HHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----HHHHHHHcccCC-CCCCcEEEEEeCchh-h--------Hhhc
Q 043250 252 SELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----RQIESLIGCLDE-LASGSRVIITTRDKQ-V--------LKTC 317 (507)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iliTtR~~~-~--------~~~~ 317 (507)
..+.. .....+.+.+++ .-+|+|||+... ...+.++..+.. ...+..|++||.... . ...+
T Consensus 195 ~~~~~----~~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl 269 (450)
T PRK00149 195 NALRN----NTMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF 269 (450)
T ss_pred HHHHc----CcHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh
Confidence 22211 123445555553 448899999532 112233322211 123445788776542 1 2222
Q ss_pred CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 318 WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
.....+++++++.++-.+++...+-.. .....++.++.|++.+.|..-.|.-+-
T Consensus 270 ~~gl~v~i~~pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l 323 (450)
T PRK00149 270 EWGLTVDIEPPDLETRIAILKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGAL 323 (450)
T ss_pred cCCeeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHH
Confidence 344679999999999999999887432 233456889999999999877655443
No 83
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.52 E-value=4.8e-06 Score=85.19 Aligned_cols=163 Identities=14% Similarity=0.134 Sum_probs=98.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccccc--ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKK 274 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 274 (507)
...+.|+|++|+|||+|+..+++.+...++ .++|+. . .++...+...+.. .......+....+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~----~~~~~f~~~~~~~~ 195 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKE----GKLNEFREKYRKKV 195 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhc----ccHHHHHHHHHhcC
Confidence 345899999999999999999998766543 234443 1 2233333333321 23344555555556
Q ss_pred EEEEEcCCCCH---H-HHHHHHcccCC-CCCCcEEEEEeC-chhhHh--------hcCCceeEecCCCChHHHHHHHHHh
Q 043250 275 VLIVFDDVSHR---R-QIESLIGCLDE-LASGSRVIITTR-DKQVLK--------TCWASQIYQMKELVYADAHKLFCQC 340 (507)
Q Consensus 275 ~LlVlDdv~~~---~-~~~~l~~~l~~-~~~~~~iliTtR-~~~~~~--------~~~~~~~~~l~~L~~~ea~~L~~~~ 340 (507)
-+|+|||+... . .-+.+...+.. ...+..||+||. .+.-+. .+.....+++++.+.+.-.+++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 68999999632 1 11223222211 123456888874 332221 1223457899999999999999887
Q ss_pred hcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 341 AFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
+... ......+.+..|++.+.|..-.|.-+-..
T Consensus 276 ~~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~ 308 (440)
T PRK14088 276 LEIE--HGELPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_pred HHhc--CCCCCHHHHHHHHhccccCHHHHHHHHHH
Confidence 7322 22334678999999998876665554433
No 84
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.52 E-value=2.1e-06 Score=93.75 Aligned_cols=193 Identities=15% Similarity=0.169 Sum_probs=104.7
Q ss_pred HHHHHHHhhhhcccccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-----c-c
Q 043250 153 LIEEIANDVLKRLDSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-----F-E 226 (507)
Q Consensus 153 ~i~~i~~~~~~~l~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f-~ 226 (507)
.+++...++.....+ ..-+.++||+.+++.+...|... ...-+.++|++|+|||++|..+++++... + .
T Consensus 164 ~l~~~~~~l~~~~r~---~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN---GKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHhc---CCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 344444444433332 23357999999999999988643 23346799999999999999999986432 1 2
Q ss_pred ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH-----------HHHHHHHcc
Q 043250 227 GSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR-----------RQIESLIGC 294 (507)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-----------~~~~~l~~~ 294 (507)
..+|..+............-. ...+..+.+.+ ..++++|++|++... +..+-+.+.
T Consensus 239 ~~~~~~~~~~l~a~~~~~g~~------------e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~ 306 (731)
T TIGR02639 239 AKIYSLDMGSLLAGTKYRGDF------------EERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA 306 (731)
T ss_pred CeEEEecHHHHhhhccccchH------------HHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH
Confidence 344544322211100000000 11222233333 246899999999532 112233333
Q ss_pred cCCCCCCcEEEEEeCchhhHh-------hcCCceeEecCCCChHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHhCC
Q 043250 295 LDELASGSRVIITTRDKQVLK-------TCWASQIYQMKELVYADAHKLFCQCAFG--GDHPDASHTELTDRAIKYAQG 364 (507)
Q Consensus 295 l~~~~~~~~iliTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~i~~~~~G 364 (507)
+. ....++|-+|..+..-+ .....+.+++++++.++..+++....-. .........+....+++.++.
T Consensus 307 l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 307 LS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred Hh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 32 22334555544322111 1113457899999999999999864421 111222334555666666543
No 85
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.52 E-value=7.6e-06 Score=75.58 Aligned_cols=259 Identities=15% Similarity=0.158 Sum_probs=146.4
Q ss_pred ccCCccccccchHHHHHHhhhcC---CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIG---SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
..-..|+|.++-.+.|.=.+... ....-.+.++|+||.||||||.-+++++..++. +......... .++.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~---gDla 95 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKP---GDLA 95 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccCh---hhHH
Confidence 34468999998888887666542 234667999999999999999999998765432 1100000011 1111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH-HHHH-HHcccCC--------CCCCcE-----------EEE
Q 043250 248 KKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR-QIES-LIGCLDE--------LASGSR-----------VII 306 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~-l~~~l~~--------~~~~~~-----------ili 306 (507)
. +...|. ..=+|++|.+.-.. ..++ +.+.... .+++++ |=.
T Consensus 96 -a----------------iLt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 96 -A----------------ILTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred -H----------------HHhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 1 111122 33366778774321 1222 2222111 123332 335
Q ss_pred EeCchhhHhhc--CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhCCCCHHHH
Q 043250 307 TTRDKQVLKTC--WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLCGRSKEEW 384 (507)
Q Consensus 307 TtR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~ 384 (507)
|||.-.+...+ ...-+.+++-.+.+|-.+.+.+.+. -...+...+.+.+|+++..|-|--..-+.+.++. +
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~--~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----f 230 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK--ILGIEIDEEAALEIARRSRGTPRIANRLLRRVRD-----F 230 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHH--HhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHH-----H
Confidence 88866443322 1334678888999999999988772 2223344677899999999999655444443321 1
Q ss_pred HHHHHHHhCCC--Cc----hHHHHHHHhHhcCChhHHHHHhhccccC--CCCCHHHHHHHHHHcCCCchhhHH-HHhhCC
Q 043250 385 ESAMRKLEVIP--HE----EIQGVLKISYDSLDDSQKNVFLDIACLL--EGTHRDYVISCLDACGFEPKIELS-VLECKS 455 (507)
Q Consensus 385 ~~~l~~l~~~~--~~----~v~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~s 455 (507)
. ...... +. .....|..-=..|+...++.|..+.-.. ++...+.+...+..+....++.++ -|++.|
T Consensus 231 a----~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~g 306 (332)
T COG2255 231 A----QVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQG 306 (332)
T ss_pred H----HHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhc
Confidence 1 111100 11 1112222223456666777776665444 446778887777655444444444 488999
Q ss_pred ceeeCCCCeE
Q 043250 456 LINLDAFDQI 465 (507)
Q Consensus 456 Li~~~~~~~~ 465 (507)
+++.+..|+.
T Consensus 307 fi~RTpRGR~ 316 (332)
T COG2255 307 FIQRTPRGRI 316 (332)
T ss_pred hhhhCCCcce
Confidence 9998877775
No 86
>PRK06620 hypothetical protein; Validated
Probab=98.49 E-value=2.4e-06 Score=78.58 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=83.2
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLI 277 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 277 (507)
+.+.|+|++|+|||+|++.+++.... .++.... .. . +..+ ..-+|
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~------~~----~-------------------~~~~-~~d~l 89 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF------FN----E-------------------EILE-KYNAF 89 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh------hc----h-------------------hHHh-cCCEE
Confidence 67899999999999999998775421 2221000 00 0 0111 23478
Q ss_pred EEcCCCCHHH--HHHHHcccCCCCCCcEEEEEeCchhh-------HhhcCCceeEecCCCChHHHHHHHHHhhcCCCCCC
Q 043250 278 VFDDVSHRRQ--IESLIGCLDELASGSRVIITTRDKQV-------LKTCWASQIYQMKELVYADAHKLFCQCAFGGDHPD 348 (507)
Q Consensus 278 VlDdv~~~~~--~~~l~~~l~~~~~~~~iliTtR~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 348 (507)
++||+...++ +-.+...+. ..|..+|+|++.+.. ...+....++++++++.++-.+++.+.+... .-
T Consensus 90 liDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l 165 (214)
T PRK06620 90 IIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV 165 (214)
T ss_pred EEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence 8999964332 323333222 346688998875422 2222344579999999999888887776322 12
Q ss_pred CChHHHHHHHHHHhCCChHHHHHHH
Q 043250 349 ASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 349 ~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
...++..+.|++.+.|.--.+.-+-
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 2446778888888877665554443
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.48 E-value=3.5e-06 Score=92.80 Aligned_cols=194 Identities=14% Similarity=0.164 Sum_probs=107.5
Q ss_pred HHHHHHHhhhhcccccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc------c
Q 043250 153 LIEEIANDVLKRLDSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF------E 226 (507)
Q Consensus 153 ~i~~i~~~~~~~l~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~ 226 (507)
.+++...++.....+ ..-+.++||+.++.++...|.... ...+.++|++|+||||+|..+++++.... .
T Consensus 169 ~l~~~~~~L~~~~r~---~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQARE---GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhcC---CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 444444444433332 334689999999999999886432 33467999999999999999999874331 1
Q ss_pred ceEEEEechhhhccCCHH-HHHHHHHHHHhcCCCCCCHHHHHHHH--cCCcEEEEEcCCCCH---------HHHHH-HHc
Q 043250 227 GSYFALNVREAEETGGIK-DLQKKLLSELLNDGNRRNIESQLNRL--ARKKVLIVFDDVSHR---------RQIES-LIG 293 (507)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~---------~~~~~-l~~ 293 (507)
..+|..++.......... +.. ..+..+.+.+ .+.+++|++|++... .+... |.+
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e-------------~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp 310 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFE-------------NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP 310 (852)
T ss_pred CeEEEeehhhhhcccccchHHH-------------HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH
Confidence 234433332221110111 110 1112222222 246899999999432 11222 333
Q ss_pred ccCCCCCCcEEEEEeCchhhHh-------hcCCceeEecCCCChHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHhCC
Q 043250 294 CLDELASGSRVIITTRDKQVLK-------TCWASQIYQMKELVYADAHKLFCQCAF--GGDHPDASHTELTDRAIKYAQG 364 (507)
Q Consensus 294 ~l~~~~~~~~iliTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~--~~~~~~~~~~~~~~~i~~~~~G 364 (507)
.+. ....++|-||..+..-+ .....+.+.+++++.+++.+++....- ..........+....+++.+.+
T Consensus 311 ~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 311 ALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred Hhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 332 23355666665432211 112346899999999999999754331 1111222345666677777765
Q ss_pred Ch
Q 043250 365 VP 366 (507)
Q Consensus 365 ~P 366 (507)
+.
T Consensus 389 yi 390 (852)
T TIGR03345 389 YI 390 (852)
T ss_pred cc
Confidence 43
No 88
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=2e-05 Score=82.60 Aligned_cols=190 Identities=12% Similarity=0.128 Sum_probs=111.6
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-----ccceEEEEechhhhccCCHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-----FEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 245 (507)
..-..++|-+..++.|..++..+ .-...+.++|++|+||||+|+.+++.+-.. .++.. ............+ +
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~-d 89 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSL-D 89 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCC-C
Confidence 34468899999999999999743 235678899999999999999999865321 11100 0000000000000 0
Q ss_pred HHHHHHHHHhcCCCCCCHHH---HHHH-----HcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch-hhH
Q 043250 246 LQKKLLSELLNDGNRRNIES---QLNR-----LARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK-QVL 314 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~---l~~~-----l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~-~~~ 314 (507)
+. .+.+. ....++. +.+. ..+++-++|+|+++. ....+.|+..+....+.+.+|++|.+. .+.
T Consensus 90 v~-----~idga-s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 90 VI-----EIDGA-SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred eE-----EecCc-ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 00000 0011222 2211 134566899999954 445677777766544566666655443 332
Q ss_pred hh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHH
Q 043250 315 KT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKV 371 (507)
Q Consensus 315 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 371 (507)
.. ......+++.+++.++..+.+...+.... .....+.+..|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg--i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ--IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22 22456789999999999998887663322 233467788899999998854433
No 89
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.46 E-value=1.5e-05 Score=74.38 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=113.4
Q ss_pred ccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc--cccceEEEEechhhhccCCHH
Q 043250 167 STFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFALNVREAEETGGIK 244 (507)
Q Consensus 167 ~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~ 244 (507)
...|...+.++|-+..++.|.+.+.. ...+....+|++|.|||+-|..+++.+-. -|++++--.+.... .+..
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde---rGis 103 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE---RGIS 103 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc---cccc
Confidence 34455567899999999999998864 56778999999999999999999987532 35555443222211 1111
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHH---c---CCc-EEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCch-hhH
Q 043250 245 DLQKKLLSELLNDGNRRNIESQLNRL---A---RKK-VLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDK-QVL 314 (507)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~l~~~l---~---~~~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~ 314 (507)
-.-. ...+...+.-.. . .++ -++|||+++.. +.|..+...+......++.|+.+..- .+.
T Consensus 104 vvr~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii 173 (346)
T KOG0989|consen 104 VVRE----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRII 173 (346)
T ss_pred chhh----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCC
Confidence 0000 011111111111 1 123 48899999754 56777877776656666665444332 221
Q ss_pred -hhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 315 -KTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 315 -~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
+......-+..++|..++...-+...+-... .....+..+.|++.++|-
T Consensus 174 ~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 174 RPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGD 223 (346)
T ss_pred hHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCc
Confidence 1112445688999999999988888773322 334467788899999884
No 90
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=1.7e-05 Score=80.93 Aligned_cols=175 Identities=11% Similarity=0.067 Sum_probs=98.3
Q ss_pred ccccccchHH--HHHHhhhcC--C--CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH
Q 043250 175 GLVGVECPIE--EIESLLCIG--S--EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 175 ~~vGR~~el~--~l~~~L~~~--~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
.++|-...+. .+.++.... . .....+.|+|++|+|||+|++.+++.+......++++. ...+..
T Consensus 113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~ 182 (445)
T PRK12422 113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTE 182 (445)
T ss_pred eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHH
Confidence 3447666643 334333211 1 12356889999999999999999998765444445554 112222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH----HHHHHHHcccCC-CCCCcEEEEEeCch-hh--------H
Q 043250 249 KLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR----RQIESLIGCLDE-LASGSRVIITTRDK-QV--------L 314 (507)
Q Consensus 249 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iliTtR~~-~~--------~ 314 (507)
.+...+.. ...+.++..++ ..-+|++||+... ...+.+...+.. ...|..||+||... .. .
T Consensus 183 ~~~~~l~~----~~~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~ 257 (445)
T PRK12422 183 HLVSAIRS----GEMQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLI 257 (445)
T ss_pred HHHHHHhc----chHHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHH
Confidence 33322221 12233444443 3458888998432 112223222211 12355688888542 21 2
Q ss_pred hhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 315 KTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 315 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
..+.....+.+.+++.++-.+++.+.+-... .....+.+..|++.+.+.-
T Consensus 258 SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 258 SRFEWGIAIPLHPLTKEGLRSFLERKAEALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCH
Confidence 2222346789999999999999988773322 2344677777887777654
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.42 E-value=3.9e-06 Score=92.72 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=95.7
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-----c-cceEEEEechhhhccCCHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-----F-EGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
+.++||+.+++.+.+.|.... ..-+.++|++|+|||++|..++.++... . ...+|..+............-.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~ 256 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF 256 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence 468999999999999997432 3346799999999999999999976431 1 2345544332211100000000
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCHH---------HHHHHH-cccCCCCCCcEEEEEeCchhhHh-
Q 043250 248 KKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHRR---------QIESLI-GCLDELASGSRVIITTRDKQVLK- 315 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~l~-~~l~~~~~~~~iliTtR~~~~~~- 315 (507)
...+..+.+.+ ..++++|++|++...- ....++ +.+. ....++|.+|..+....
T Consensus 257 ------------e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 257 ------------EERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKH 322 (821)
T ss_pred ------------HHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHH
Confidence 11122222222 3468999999994221 122333 2222 23345565555443211
Q ss_pred ------hcCCceeEecCCCChHHHHHHHHHhh--cCCCCCCCChHHHHHHHHHHhCC
Q 043250 316 ------TCWASQIYQMKELVYADAHKLFCQCA--FGGDHPDASHTELTDRAIKYAQG 364 (507)
Q Consensus 316 ------~~~~~~~~~l~~L~~~ea~~L~~~~~--~~~~~~~~~~~~~~~~i~~~~~G 364 (507)
.......+.+...+.++...++.... +..........+....+++.+++
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 11234568899999999888876432 11111111234555666666553
No 92
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=8.3e-06 Score=86.60 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=109.3
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc----cCCHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE----TGGIKD 245 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~----~~~~~~ 245 (507)
|..-..++|.+..++.|..++..+ .-...+.++|++|+|||++|+.+++.+-..-....+-. +..+.. ..++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~Dvi- 90 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLDII- 90 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCcEE-
Confidence 344467899999999999998743 23566789999999999999999986522111000000 000000 00000
Q ss_pred HHHHHHHHHhcC--CCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEE-EEeCchhhHh
Q 043250 246 LQKKLLSELLND--GNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVI-ITTRDKQVLK 315 (507)
Q Consensus 246 l~~~l~~~~~~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~il-iTtR~~~~~~ 315 (507)
.+... ...+.++.+.+.+ .+++-++|+|+++. ......|+..+......+.+| +|+....+.+
T Consensus 91 -------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 91 -------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred -------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 00000 0011122232222 24566999999963 345666776655434455544 4544444433
Q ss_pred h-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH-HHHH
Q 043250 316 T-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL-ALKV 371 (507)
Q Consensus 316 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 371 (507)
. ...+..+++.+++.++..+.+...+-... .....+.+..+++.++|.+. |+..
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 23457899999999999988877552221 22335668889999999764 4443
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.39 E-value=4.1e-06 Score=79.89 Aligned_cols=131 Identities=12% Similarity=0.130 Sum_probs=70.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccc--cceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCC
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARK 273 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~ 273 (507)
....+.++|++|+||||+|+.+++.+.... ....++. +.. .++.. ...+.. ......+.+.. .
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-------~~l~~----~~~g~~-~~~~~~~~~~a--~ 105 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-------ADLVG----EYIGHT-AQKTREVIKKA--L 105 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH-------HHhhh----hhccch-HHHHHHHHHhc--c
Confidence 356688999999999999999998653211 1112221 100 11111 110000 01111122221 2
Q ss_pred cEEEEEcCCCC----------HHHHHHHHcccCCCCCCcEEEEEeCchhhHh------hc--CCceeEecCCCChHHHHH
Q 043250 274 KVLIVFDDVSH----------RRQIESLIGCLDELASGSRVIITTRDKQVLK------TC--WASQIYQMKELVYADAHK 335 (507)
Q Consensus 274 ~~LlVlDdv~~----------~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~~--~~~~~~~l~~L~~~ea~~ 335 (507)
..+|+||+++. .+.++.++..+........+++++.....-. .. .....+.+++++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 34889999964 2345666665544334445555554322200 11 123568899999999999
Q ss_pred HHHHhh
Q 043250 336 LFCQCA 341 (507)
Q Consensus 336 L~~~~~ 341 (507)
++...+
T Consensus 186 Il~~~~ 191 (261)
T TIGR02881 186 IAERMV 191 (261)
T ss_pred HHHHHH
Confidence 998776
No 94
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.8e-05 Score=79.21 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=108.1
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-----------------------ccc
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-----------------------FEG 227 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----------------------f~~ 227 (507)
..-+.++|.+...+.|..++..+ .-...+.++|+.|+||||+|..++..+... |+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n- 91 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN- 91 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-
Confidence 34468899999999999998642 235568899999999999999999865311 11
Q ss_pred eEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCC
Q 043250 228 SYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELAS 300 (507)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~ 300 (507)
...+. ......+. .+..+.+.+ .+++-++|+|+++. ....+.|+..+.....
T Consensus 92 ~~~ld----~~~~~~vd-----------------~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 92 IHELD----AASNNSVD-----------------DIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred eEEec----ccccCCHH-----------------HHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 00010 00001111 111122111 23455889999964 3456667766654445
Q ss_pred CcEEEE-EeCchhhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 301 GSRVII-TTRDKQVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 301 ~~~ili-TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
.+.+|+ |+....+.+. ......+++.+++.++....+...+-... .....+.+..|++.++|..--+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 566555 4444444433 23467899999999999998887653222 2234567889999999977543
No 95
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=2.3e-05 Score=80.27 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=108.3
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc---c-ceEEE-EechhhhccCCHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---E-GSYFA-LNVREAEETGGIKD 245 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~-~~~~~-~~~~~~~~~~~~~~ 245 (507)
..-+.++|.+..++.|.+++..+ .-...+.++|++|+||||+|..+++.+...- . ..+-. .++..........
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 34468899999999999988632 2246688999999999999999998653210 0 00000 0000000000000
Q ss_pred HHHHHHHHHhcCCC--CCCHHHHHHHH-----cCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCc-hhhHh
Q 043250 246 LQKKLLSELLNDGN--RRNIESQLNRL-----ARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRD-KQVLK 315 (507)
Q Consensus 246 l~~~l~~~~~~~~~--~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~ 315 (507)
+ ..+.+... .+.+..+.+.+ .+.+-++|+|+++.. +..+.|+..+......+.+|++|.+ ..+..
T Consensus 92 ----~-~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 92 ----V-LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred ----e-EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 0 00000000 01111111111 256678999999643 4455666665544455666666533 33322
Q ss_pred h-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH-HHHH
Q 043250 316 T-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL-ALKV 371 (507)
Q Consensus 316 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 371 (507)
. ......+++.+++.++..+.+...+-.. ......+.+..|++.++|.+. ++..
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~e--g~~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQE--GIETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 1245689999999999998887765221 122346778899999999774 4333
No 96
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=1.6e-05 Score=82.90 Aligned_cols=160 Identities=11% Similarity=0.126 Sum_probs=96.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccc--cceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
..+.|+|..|+|||.|+..+++.+...+ ..++|+. ..++...+...+.. ...+.+.+.+.+ .=
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~----~~~~~f~~~y~~-~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD----GKGDSFRRRYRE-MD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh----ccHHHHHHHhhc-CC
Confidence 4589999999999999999999876533 2234443 22233333332211 123334444443 34
Q ss_pred EEEEcCCCCH---HH-HHHHHcccCC-CCCCcEEEEEeCch---------hhHhhcCCceeEecCCCChHHHHHHHHHhh
Q 043250 276 LIVFDDVSHR---RQ-IESLIGCLDE-LASGSRVIITTRDK---------QVLKTCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 276 LlVlDdv~~~---~~-~~~l~~~l~~-~~~~~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+|||||+... +. -+.|+..+.. ...+..|||||... .+...+....+++|.+.+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999532 11 1223322221 13355688888753 122233445678999999999999999887
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCChHHHHHHHh
Q 043250 342 FGGDHPDASHTELTDRAIKYAQGVPLALKVLGC 374 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 374 (507)
.... .....++++.|++.+.+..-.|.-+..
T Consensus 460 ~~r~--l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 460 VQEQ--LNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HhcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 4332 334478888888888877655554443
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=5e-05 Score=79.97 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=108.3
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHHHHH
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQK 248 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~ 248 (507)
|...+.++|.+...+.|.+++..+. -...+.++|+.|+|||++|+.+++.+-. +-...- .++ .. ....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~---~C----~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCN---EC----EICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCC---cc----HHHH
Confidence 3344789999999999999987432 3566788999999999999999986521 100000 000 00 0000
Q ss_pred HHHHHHh-------cC--CCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEe-Cch
Q 043250 249 KLLSELL-------ND--GNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITT-RDK 311 (507)
Q Consensus 249 ~l~~~~~-------~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTt-R~~ 311 (507)
.+..... .. ...+.+..+.+.. .++.-++|+|+++. ......|+..+........+|++| ...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 0100000 00 0011122233322 34566889999964 355667776655433444455444 433
Q ss_pred hhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 312 QVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 312 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
.+... ......+++.+++.++..+.+...+-... .....+.+..|++.++|.+.-+
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg--i~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEG--IEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 33322 22456789999999999998877663222 1233567888899999887543
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.4e-05 Score=78.99 Aligned_cols=192 Identities=17% Similarity=0.133 Sum_probs=110.1
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc-cceEEEEechhhhccCCHHHHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
..-..++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.+.... .....- ..+.......
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~--------~Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE--------PCGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC--------CCcccHHHHH
Confidence 344678999999999999887432 245688999999999999999998753211 000000 0000011111
Q ss_pred HHHHHh------cCCC---CCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch-h
Q 043250 250 LLSELL------NDGN---RRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK-Q 312 (507)
Q Consensus 250 l~~~~~------~~~~---~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~-~ 312 (507)
+..... .... .+.++++.+.+ .+++-++|||+++. .+....|+..+......+.+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 111000 0000 11222222222 23456899999974 345667776665434455555544433 3
Q ss_pred hHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 313 VLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 313 ~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
+.... .....+++.+++.++....+...+.... .....+.+..|++.++|.+..+..+.
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg--i~is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES--IEIEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 2457788999999998888876653211 12335668899999999886554443
No 99
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.37 E-value=5.8e-07 Score=75.83 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=46.2
Q ss_pred ccEEEcCccccccCchHHHHHHHHhhC-------CCce-E---------eeC-CCCCCCcccHHHHHHhhhcceEEEEec
Q 043250 2 YDVFLSFRGEDTRDNFTSILHYVLSLK-------SIKT-F---------IDD-QLIRGENISHSLLDTIEASSISIIIFS 63 (507)
Q Consensus 2 ~dvFis~~~~d~~~~~~~~l~~~l~~~-------g~~~-~---------~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s 63 (507)
|.|||||++.|.. ..+..|.+.+... .+.. | .+. +....+.|...|.+.|..|+++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899999999933 2677777777663 2221 1 111 222345789999999999999999999
Q ss_pred CCCcCchhhHHHHHHHHHHHHhCCCeEEeEE
Q 043250 64 QRYASSRWCLDELLKILECKHNYGQIVIPVF 94 (507)
Q Consensus 64 ~~y~~s~~c~~El~~~~~~~~~~~~~v~pv~ 94 (507)
++-..|.|+..|+..+++ .+..|+.|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998776 334455553
No 100
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.32 E-value=8.6e-07 Score=79.82 Aligned_cols=50 Identities=30% Similarity=0.407 Sum_probs=35.5
Q ss_pred ccccccchHHHHHHhhhc-CCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 175 GLVGVECPIEEIESLLCI-GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
.|+||+.++++|...|.. .....+.+.|+|++|+|||+|..+++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952 33457899999999999999999999987766
No 101
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=5e-05 Score=74.43 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=92.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc---------------------ccceEEEEechhhhccCCHHHHHHHHHHHH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSYFALNVREAEETGGIKDLQKKLLSEL 254 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (507)
-...+.++|+.|+|||++|..+++.+--. ++...++.... ....-.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~i~------------ 87 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKTIK------------ 87 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCCCC------------
Confidence 35678899999999999999999864221 11222221100 000001
Q ss_pred hcCCCCCCHHHHHHHH-----cCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCchh-hHhh-cCCceeEec
Q 043250 255 LNDGNRRNIESQLNRL-----ARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDKQ-VLKT-CWASQIYQM 325 (507)
Q Consensus 255 ~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~-~~~~~~~~l 325 (507)
.+.+.++.+.+ .+++-++|||+++ +.+....++..+..-.+++.+|+||.+.. +.+. ......+.+
T Consensus 88 -----id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 88 -----VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred -----HHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 11222222222 2334455789996 45566777776665456677777776653 3332 234678999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 326 KELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 326 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
.+++.+++.+.+.... . ....+.+..++..++|.|+....+
T Consensus 163 ~~~~~~~~~~~L~~~~-~-----~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQAL-P-----ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhc-c-----cCChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999997653 1 112344667789999999754444
No 102
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=5.7e-05 Score=73.62 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=111.2
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc---------------cccceEEEEechhhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR---------------HFEGSYFALNVREAE 238 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------~f~~~~~~~~~~~~~ 238 (507)
..++|.+...+.+.+.+..+ .-.....++|+.|+||+++|..+++.+-. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 46899999999999988643 22578999999999999999999886421 23444554321000
Q ss_pred ccCCHHHHHHHHHHHHh---cCCC---CCCHHHHHHHHc-----CCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEE
Q 043250 239 ETGGIKDLQKKLLSELL---NDGN---RRNIESQLNRLA-----RKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVI 305 (507)
Q Consensus 239 ~~~~~~~l~~~l~~~~~---~~~~---~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~il 305 (507)
...... .......+ .... .+.++.+.+.+. +.+-++|+|+++. ......|+..+...+ .+.+|
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 000000 00001111 0001 123334444443 3566899999964 345566666665434 44555
Q ss_pred EEe-CchhhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 306 ITT-RDKQVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 306 iTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
++| ....+.+.. .....+++.+++.++..+.+...... . ........++..++|.|.....+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~---~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--E---ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--c---cchhHHHHHHHHcCCCHHHHHHHH
Confidence 544 444444332 35688999999999999999876521 1 111124678899999997655443
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=2e-05 Score=77.64 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=111.0
Q ss_pred cCCccccccchHHHHHHhhhc--CCCCceEEEEeccccchhhHHHHHHHhhhcccccc--eEEEEechhhhccCCHHHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCI--GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 247 (507)
.+..++||+.|+..+..++.. ..+..+.+-|.|-+|.|||.+...++.+....... .+++.+. .-.....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~----sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT----SLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec----cccchHHHH
Confidence 457899999999999999875 33456778899999999999999999876554443 3555422 123344555
Q ss_pred HHHHHHH----hcCCCC-CCHHHHHHHHcC--CcEEEEEcCCCCHHH--HHHHHcccCC-CCCCcEEEEEeCch------
Q 043250 248 KKLLSEL----LNDGNR-RNIESQLNRLAR--KKVLIVFDDVSHRRQ--IESLIGCLDE-LASGSRVIITTRDK------ 311 (507)
Q Consensus 248 ~~l~~~~----~~~~~~-~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~l~~~l~~-~~~~~~iliTtR~~------ 311 (507)
..+...+ ...... +....+.....+ ..+|+|+|..+.... -..+...+.| --+++++|+.---.
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 5555555 222211 122334444433 368999999865432 1112222222 13555554432111
Q ss_pred hhHhhcC-----CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHH
Q 043250 312 QVLKTCW-----ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALK 370 (507)
Q Consensus 312 ~~~~~~~-----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 370 (507)
..++.+. ....+..+|.+.++..+.|..+.-.... .......++.+++++.|.-=-++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t-~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST-SIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc-cccchHHHHHHHHHhccCchhHH
Confidence 1112111 3456889999999999999988733221 11222344445555554443333
No 104
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=6.2e-05 Score=79.66 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=108.4
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-ccc-c-eEEEE-echhhhccCCHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFE-G-SYFAL-NVREAEETGGIKDL 246 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~-~-~~~~~-~~~~~~~~~~~~~l 246 (507)
..-+.++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+.. +.. . .|-.+ .+..+...... ++
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~-d~ 90 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV-DV 90 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC-Ce
Confidence 34468999999999999988643 23456789999999999999999986532 110 0 00000 00000000000 00
Q ss_pred HHHHHHHHhcC--CCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEe-CchhhHhh
Q 043250 247 QKKLLSELLND--GNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITT-RDKQVLKT 316 (507)
Q Consensus 247 ~~~l~~~~~~~--~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTt-R~~~~~~~ 316 (507)
. .+.+. ...+.+.++.+.+ .++.-++|+|+++. ......|+..+....+.+.+|++| ....+...
T Consensus 91 ~-----eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 91 F-----EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred e-----eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0 00000 0011222233222 23455889999964 344666666665444555665544 44444332
Q ss_pred -cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh-HHHHHH
Q 043250 317 -CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP-LALKVL 372 (507)
Q Consensus 317 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~ 372 (507)
......+++.+++.++....+...+-... .....+.+..|++.++|.. .++..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22456789999999999888876552221 2234567888999999976 444444
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.27 E-value=1.9e-05 Score=87.53 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=86.7
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc------cceEEEEechhhhccCCHHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l 246 (507)
-+.++||+.++.++...|.... ...+.++|++|+|||++|..+++++...+ ...+|..++...........
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g- 248 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG- 248 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh-
Confidence 3569999999999999987433 33456899999999999999999875431 23344432221100000000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHc--CCcEEEEEcCCCCHH---------HHHHHHcccCCCCCCcEEEEEeCchhhHh
Q 043250 247 QKKLLSELLNDGNRRNIESQLNRLA--RKKVLIVFDDVSHRR---------QIESLIGCLDELASGSRVIITTRDKQVLK 315 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~~~iliTtR~~~~~~ 315 (507)
++ ...+..+.+.+. +++.+|++|++.... +..+++..... ....++|.+|..+..-.
T Consensus 249 --~~---------e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 249 --EF---------EERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRK 316 (852)
T ss_pred --hH---------HHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHH
Confidence 00 111222333332 468999999996332 12233322221 22344555554443211
Q ss_pred -------hcCCceeEecCCCChHHHHHHHHHh
Q 043250 316 -------TCWASQIYQMKELVYADAHKLFCQC 340 (507)
Q Consensus 316 -------~~~~~~~~~l~~L~~~ea~~L~~~~ 340 (507)
.....+.+.++..+.++..+++...
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 1123356889999999999988764
No 106
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.26 E-value=2.2e-05 Score=86.76 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=92.3
Q ss_pred HHHHHHHhhhhcccccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc------c
Q 043250 153 LIEEIANDVLKRLDSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF------E 226 (507)
Q Consensus 153 ~i~~i~~~~~~~l~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~ 226 (507)
.+++...++.....+ ..-+.++||+.++..+...|.... ...+.++|++|+|||+||..++.++.... .
T Consensus 160 ~l~~~~~~l~~~~r~---~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERAEQ---GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHHhc---CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 344444444433322 233569999999999999987432 33467999999999999999999874421 2
Q ss_pred ceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--cCCcEEEEEcCCCCHH---------HHHHH-Hcc
Q 043250 227 GSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL--ARKKVLIVFDDVSHRR---------QIESL-IGC 294 (507)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~~l-~~~ 294 (507)
..+|..++...........-+ ...+..+.+.+ .+.+++|++|++.... +...+ .+.
T Consensus 235 ~~~~~l~l~~l~ag~~~~g~~------------e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~ 302 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEF------------EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA 302 (857)
T ss_pred CEEEEEehhhhhhccchhhhh------------HHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch
Confidence 334433232211100000000 01122222222 2478999999995432 12333 333
Q ss_pred cCCCCCCcEEEEEeCchhhHh-------hcCCceeEecCCCChHHHHHHHHHhh
Q 043250 295 LDELASGSRVIITTRDKQVLK-------TCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 295 l~~~~~~~~iliTtR~~~~~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+. ....++|-+|..++... .....+.+.+...+.++...++....
T Consensus 303 l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 303 LA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 32 23345565554443211 11123356677778888888886543
No 107
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.25 E-value=9.3e-06 Score=83.42 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=88.9
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccc-----cceEEEEechhh
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-----EGSYFALNVREA 237 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~ 237 (507)
..+.|.+.+++++.+.+.. +-...+-+.|+|++|+|||++|+.+++.+...+ ....|+. +...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccch
Confidence 5677899999988876531 112356689999999999999999999875542 2233432 1110
Q ss_pred h---cc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCcEEEEEcCCCCHH--------------HHHHHHcccCCC
Q 043250 238 E---ET-GGIKDLQKKLLSELLNDGNRRNIESQLNR-LARKKVLIVFDDVSHRR--------------QIESLIGCLDEL 298 (507)
Q Consensus 238 ~---~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~ 298 (507)
. .. ......++.++. ..+.. ..+++++|+||+++... .+..++..+...
T Consensus 261 eLl~kyvGete~~ir~iF~------------~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 ELLNKYVGETERQIRLIFQ------------RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred hhcccccchHHHHHHHHHH------------HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 0 00 000011111111 11111 23478999999996421 123444443322
Q ss_pred C--CCcEEEEEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhh
Q 043250 299 A--SGSRVIITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 299 ~--~~~~iliTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
. .+..||.||.....+. .+ .....++++..+.++..++|..+.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 1 3444566665443321 11 235568999999999999998876
No 108
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.24 E-value=2.4e-05 Score=78.70 Aligned_cols=174 Identities=15% Similarity=0.210 Sum_probs=97.5
Q ss_pred cCCccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhcc
Q 043250 172 ENKGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEET 240 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (507)
.-..+.|.+...++|.+.+.. +-..++.+.|+|++|+|||+||+.+++.....| +.+. ..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~s----- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-GS----- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH-----
Confidence 335688999998888876531 112467799999999999999999998764432 1111 00
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCcEEEEEcCCCCH-------------H---HHHHHHcccCCC--CCC
Q 043250 241 GGIKDLQKKLLSELLNDGNRRNIESQLN-RLARKKVLIVFDDVSHR-------------R---QIESLIGCLDEL--ASG 301 (507)
Q Consensus 241 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-------------~---~~~~l~~~l~~~--~~~ 301 (507)
.+.... .+. ....+..+.. .....+.+|+||+++.. . .+..++..+... ..+
T Consensus 214 ----~l~~k~----~ge-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 ----EFVQKY----LGE-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred ----HHHHHh----cch-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111110 000 0111222222 23457899999998532 0 123333333221 235
Q ss_pred cEEEEEeCchhhHhh-c----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 302 SRVIITTRDKQVLKT-C----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 302 ~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
..||+||........ + .....++++..+.++-.++|..+........ .-....+++.+.|+.
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCC
Confidence 667888775543321 1 2356789999999888888876653222111 112455666666653
No 109
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.23 E-value=2.8e-05 Score=82.80 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=39.3
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3446789999999988877642 334579999999999999999998754
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.23 E-value=2.7e-05 Score=84.23 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=85.9
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc------ccceEEEEechhhhccCCHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
+.++||+.++.++.+.|.... ..-+.|+|++|+|||++|+.+++++... ....+|..+. ..++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~~ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------GSLL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------HHHh
Confidence 468999999999999887532 2345789999999999999999865332 1223332211 1111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH----------HHHHHHHcccCCCCCCcEEEEEeCchhhHh-
Q 043250 248 KKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR----------RQIESLIGCLDELASGSRVIITTRDKQVLK- 315 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~- 315 (507)
. ...........+..+...+ ...+.+|+||++... .+...++..+.. ....++|-+|..+....
T Consensus 255 a---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 255 A---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred c---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHH
Confidence 0 0000000011222233333 346789999999532 222223322221 23345555554433211
Q ss_pred ------hcCCceeEecCCCChHHHHHHHHHhh
Q 043250 316 ------TCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 316 ------~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
.....+.+.+++++.+++.+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11233579999999999999998643
No 111
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.22 E-value=7.5e-06 Score=73.22 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=48.2
Q ss_pred cccccccccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-cccceEE
Q 043250 164 RLDSTFQSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYF 230 (507)
Q Consensus 164 ~l~~~~~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~ 230 (507)
++....|..-..+||-++.++.+.-... .++.+-+.|.||||+||||-+..+++++-+ .|...+.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 3344455566789999999998887664 446677899999999999999999987643 3444333
No 112
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.18 E-value=6.3e-05 Score=74.64 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=92.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
....+.|||..|.|||.|++++++......+....+. . ........+...+.. ...+..++.. .-=
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~----~~~~~Fk~~y--~~d 177 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRD----NEMEKFKEKY--SLD 177 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHh----hhHHHHHHhh--ccC
Confidence 3667999999999999999999998877766433332 1 122222222222221 2344455555 344
Q ss_pred EEEEcCCCCH----HHHHHHHcccCC-CCCCcEEEEEeCchh---------hHhhcCCceeEecCCCChHHHHHHHHHhh
Q 043250 276 LIVFDDVSHR----RQIESLIGCLDE-LASGSRVIITTRDKQ---------VLKTCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 276 LlVlDdv~~~----~~~~~l~~~l~~-~~~~~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
++++||++-. ..-+.+...++. ...|..||+|++... +...+....++++.+++.+.....+.+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 8899999431 112333333321 133448999986542 22333455789999999999999998876
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 342 FGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.... .....+....+++....+=
T Consensus 258 ~~~~--~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 258 EDRG--IEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred HhcC--CCCCHHHHHHHHHHhhccH
Confidence 3222 2233556666666655443
No 113
>PRK08116 hypothetical protein; Validated
Probab=98.17 E-value=1.5e-05 Score=75.92 Aligned_cols=102 Identities=22% Similarity=0.337 Sum_probs=59.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLI 277 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 277 (507)
..+.|+|.+|+|||.||..+++.+..+...++++. ..+++..+...... ........+.+.+.+-. ||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~-~~~~~~~~~~~~l~~~d-lL 182 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKS-SGKEDENEIIRSLVNAD-LL 182 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhc-cccccHHHHHHHhcCCC-EE
Confidence 45889999999999999999998866544445543 23333333333221 11223444566666555 89
Q ss_pred EEcCCC----CHHHHHHHHcccCC-CCCCcEEEEEeCch
Q 043250 278 VFDDVS----HRRQIESLIGCLDE-LASGSRVIITTRDK 311 (507)
Q Consensus 278 VlDdv~----~~~~~~~l~~~l~~-~~~~~~iliTtR~~ 311 (507)
||||+. +......+...+.. ...+..+|+||...
T Consensus 183 viDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 183 ILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999993 12222233332221 13456688888754
No 114
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.17 E-value=4.5e-05 Score=73.46 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=71.2
Q ss_pred EEEEeccccchhhHHHHHHHhhhccc--ccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
.+.++|++|+|||++|+.+++.+... .....|+. .+ ..++.. .+.+.. ......+.+.. .+-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~----~~~l~~----~~~g~~-~~~~~~~~~~a--~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VT----RDDLVG----QYIGHT-APKTKEILKRA--MGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ec----HHHHhH----hhcccc-hHHHHHHHHHc--cCcE
Confidence 58899999999999999888765432 11122332 11 111111 111111 11112222222 3468
Q ss_pred EEEcCCCCH-----------HHHHHHHcccCCCCCCcEEEEEeCchhhHhhc--------CCceeEecCCCChHHHHHHH
Q 043250 277 IVFDDVSHR-----------RQIESLIGCLDELASGSRVIITTRDKQVLKTC--------WASQIYQMKELVYADAHKLF 337 (507)
Q Consensus 277 lVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~--------~~~~~~~l~~L~~~ea~~L~ 337 (507)
|+||++... +....++..+.....+.+||+++..+...... .....+++++++.+|..+++
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 999999632 23455555555444566677776543221111 12456899999999999998
Q ss_pred HHhh
Q 043250 338 CQCA 341 (507)
Q Consensus 338 ~~~~ 341 (507)
....
T Consensus 205 ~~~l 208 (284)
T TIGR02880 205 GLML 208 (284)
T ss_pred HHHH
Confidence 7766
No 115
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.15 E-value=0.00015 Score=74.59 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=92.0
Q ss_pred CccccccchHHHHHHhh---hc-----CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 174 KGLVGVECPIEEIESLL---CI-----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L---~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
+++-|.+...+.+.... .. +-...+-|.++|++|+|||.+|+.+++..... ++..+.....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~l~------- 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGKLF------- 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHHhc-------
Confidence 45677766555554321 11 11345679999999999999999999875432 2222111110
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHH-HHcCCcEEEEEcCCCCHH--------------HHHHHHcccCCCCCCcEEEEEeCc
Q 043250 246 LQKKLLSELLNDGNRRNIESQLN-RLARKKVLIVFDDVSHRR--------------QIESLIGCLDELASGSRVIITTRD 310 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~~~~~~iliTtR~ 310 (507)
....+. ....+..+.+ .-...+++|+||+++..- .+..++..+.....+.-||.||..
T Consensus 297 ------~~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~ 369 (489)
T CHL00195 297 ------GGIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANN 369 (489)
T ss_pred ------ccccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 000000 0011111211 123578999999996321 122233333322344456667765
Q ss_pred hhhHh-h----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 311 KQVLK-T----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 311 ~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
...+. . ......+.++..+.++-.++|..+..... +..........+++.+.|+-
T Consensus 370 ~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 370 IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCC
Confidence 53322 1 13456788999999999999987763322 11111122456666666643
No 116
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00035 Score=63.99 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=107.1
Q ss_pred ccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHH
Q 043250 175 GLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL 254 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (507)
.+++-...-+.+...-..-..+.+++.|+|.-|+|||.+.+.+...+.+.=...+.+ ..+..+...+...+...+
T Consensus 29 ~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i-----~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 29 LDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVI-----DKPTLSDATLLEAIVADL 103 (269)
T ss_pred hhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEe-----cCcchhHHHHHHHHHHHh
Confidence 344444443333332222234566899999999999999996555443321222222 222345556666666666
Q ss_pred hcCCCCCCHH----H----HHHH-HcCCc-EEEEEcCCCC--HHHHHHHH---cccCCCCCCcEEEEEeCch----h---
Q 043250 255 LNDGNRRNIE----S----QLNR-LARKK-VLIVFDDVSH--RRQIESLI---GCLDELASGSRVIITTRDK----Q--- 312 (507)
Q Consensus 255 ~~~~~~~~~~----~----l~~~-l~~~~-~LlVlDdv~~--~~~~~~l~---~~l~~~~~~~~iliTtR~~----~--- 312 (507)
... +...+. + +.+. -++++ +.+++|+..+ .+.++.+. ..-......-+|+..-..+ .
T Consensus 104 ~~~-p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~ 182 (269)
T COG3267 104 ESQ-PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLP 182 (269)
T ss_pred ccC-ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchH
Confidence 552 222222 2 2222 24455 9999999953 33343332 2111111112343333211 0
Q ss_pred hHhhc-CCcee-EecCCCChHHHHHHHHHhhcCCCCCCC-ChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 313 VLKTC-WASQI-YQMKELVYADAHKLFCQCAFGGDHPDA-SHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 313 ~~~~~-~~~~~-~~l~~L~~~ea~~L~~~~~~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
..... ....+ |++.|++.++...++..+.-+...+.+ ...+....|.....|.|.++..++..
T Consensus 183 ~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 183 VLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 11111 12233 899999999999999887744333322 33567788999999999999988743
No 117
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.12 E-value=1.9e-05 Score=79.91 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=96.7
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGG 242 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (507)
..+.|.+.++++|.+.+.. +-...+.+.|+|++|+|||+||+.++++....|- .+. ...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GSE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cch------
Confidence 5678999999998887642 1123567889999999999999999998755431 111 000
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHH-HHHcCCcEEEEEcCCCCHH----------------HHHHHHcccCCC--CCCcE
Q 043250 243 IKDLQKKLLSELLNDGNRRNIESQL-NRLARKKVLIVFDDVSHRR----------------QIESLIGCLDEL--ASGSR 303 (507)
Q Consensus 243 ~~~l~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~~~~ 303 (507)
+.... .+.. ...+..+. ....+.+.+|+||+++... .+..++..+..+ ..+..
T Consensus 253 ---L~~k~----~Ge~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 253 ---LIQKY----LGDG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred ---hhhhh----cchH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 00000 0000 00111111 1224578899999974221 122233322211 23567
Q ss_pred EEEEeCchhhHhhc-----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 304 VIITTRDKQVLKTC-----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 304 iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
||+||.....+... .....++++..+.++..++|..+...-..... -....++..+.|+-
T Consensus 325 VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~s 389 (438)
T PTZ00361 325 VIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELS 389 (438)
T ss_pred EEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCC
Confidence 78887755443321 23567899999999999999877633221111 12345566665543
No 118
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.11 E-value=2.3e-05 Score=71.80 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=42.7
Q ss_pred ccccCCccccccchHHHHHHhhhc--CCCCceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 169 FQSENKGLVGVECPIEEIESLLCI--GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
.+...+.++|.+.+.+.|.+-... ......-+.+||..|+|||+|++++.+.+...-
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 344557899999999988764332 222345678999999999999999999876543
No 119
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00028 Score=68.65 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCch-hhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCC
Q 043250 272 RKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDK-QVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHP 347 (507)
Q Consensus 272 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 347 (507)
++.-++|||+++.. .....|+..+..-.+++.+|++|.+. .+++.. .....+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 35568999999744 45666776665545677776666654 444332 346789999999999999886532
Q ss_pred CCChHHHHHHHHHHhCCChHHHHHHH
Q 043250 348 DASHTELTDRAIKYAQGVPLALKVLG 373 (507)
Q Consensus 348 ~~~~~~~~~~i~~~~~G~PLal~~~~ 373 (507)
.....+..++..++|.|+....+.
T Consensus 186 --~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 --VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHHh
Confidence 112336678999999998655443
No 120
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.09 E-value=4.7e-05 Score=64.16 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEeccccchhhHHHHHHHhhhc
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=98.08 E-value=7.1e-05 Score=79.63 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=99.6
Q ss_pred CccccccchHHHHHHhh---hcC-------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCH
Q 043250 174 KGLVGVECPIEEIESLL---CIG-------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGI 243 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L---~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (507)
+.+.|.+...+++.+.+ ... ....+-+.++|++|+|||+||+.++......| +......
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s~------- 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGSE------- 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHHH-------
Confidence 56788877776666544 211 12245699999999999999999998653221 1111111
Q ss_pred HHHHHHHHHHHhcCCCCCCHHH-HHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCCC--CCCcEE
Q 043250 244 KDLQKKLLSELLNDGNRRNIES-QLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDEL--ASGSRV 304 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~~~~i 304 (507)
+..... + .....+.. +.......+++|+||+++.. ..+..++..+... ..+..|
T Consensus 252 --f~~~~~----g-~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 252 --FVEMFV----G-VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred --HHHHhh----h-hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 110000 0 00111222 23334567899999999643 1234444333221 345566
Q ss_pred EEEeCchhhHhh-c----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCC-ChHHHHHH
Q 043250 305 IITTRDKQVLKT-C----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQG-VPLALKVL 372 (507)
Q Consensus 305 liTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~ 372 (507)
|.||........ + .....+.++..+.++-.+++..++-... .........+++.+.| .+--|+.+
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCCCHHHHHHH
Confidence 667765433221 1 2346788999999999999988773311 1223446678888877 34334333
No 122
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.7e-05 Score=71.71 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=96.8
Q ss_pred ccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCH
Q 043250 175 GLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGI 243 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (507)
.+=|-+.++++|.+...- +-..++-|.+||+||.|||-||++++++.... |+..++.
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS------- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS------- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH-------
Confidence 344677777777765532 22456779999999999999999999975443 3432211
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCHH----------------HHHHHHcccCCCC--CCcEE
Q 043250 244 KDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHRR----------------QIESLIGCLDELA--SGSRV 304 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~--~~~~i 304 (507)
++.+. ..++. ...+.++.+.. .+.+++|++|.++... .+-+|+..+..+. ...+|
T Consensus 220 -ElVqK----YiGEG-aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 220 -ELVQK----YIGEG-ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred -HHHHH----Hhccc-hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 11111 11111 12233344433 3579999999995321 1334444544333 45688
Q ss_pred EEEeCchhhHhh-----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 305 IITTRDKQVLKT-----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 305 liTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
|..|-..+++.. -..+..++++.-+.+.-.+.|.-++-.-...... -.+.+++.|.|.-
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv---d~e~la~~~~g~s 357 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV---DLELLARLTEGFS 357 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc---CHHHHHHhcCCCc
Confidence 877755444221 1245678888666666677777666322211111 1456667777654
No 123
>PRK08181 transposase; Validated
Probab=98.08 E-value=1.7e-05 Score=75.28 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=56.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLI 277 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 277 (507)
.-+.|+|++|+|||.||..+++........+.|+. ..+++..+.... .........+.+. +.-||
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~----~~~~~~~~l~~l~-~~dLL 171 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVAR----RELQLESAIAKLD-KFDLL 171 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHH----hCCcHHHHHHHHh-cCCEE
Confidence 45899999999999999999997766544555554 233444443221 1123333444443 34499
Q ss_pred EEcCCCC----HHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 278 VFDDVSH----RRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 278 VlDdv~~----~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
||||+.. ......+...+...-.+..+||||..+
T Consensus 172 IIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 172 ILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999932 222223333332111123588888765
No 124
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.05 E-value=6.9e-05 Score=70.02 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=46.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
...+.++|.+|+|||+||..+++.+......++++. ..++...+-.... ......+.+.+.+.+ .=|
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~--~~~~~~~~~l~~l~~-~dl 165 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFS--NSETSEEQLLNDLSN-VDL 165 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHh--hccccHHHHHHHhcc-CCE
Confidence 457899999999999999999998766544555553 2333333333221 111233345555653 448
Q ss_pred EEEcCCC
Q 043250 277 IVFDDVS 283 (507)
Q Consensus 277 lVlDdv~ 283 (507)
|||||+.
T Consensus 166 LvIDDig 172 (244)
T PRK07952 166 LVIDEIG 172 (244)
T ss_pred EEEeCCC
Confidence 8889993
No 125
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.02 E-value=7.9e-05 Score=77.90 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=105.7
Q ss_pred CCccccccchHHHHHHhhh---c-------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCC
Q 043250 173 NKGLVGVECPIEEIESLLC---I-------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGG 242 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (507)
-+.++|.+...+++.+++. . +....+-+.++|++|+|||+||+.++......| +..+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~-------- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISG-------- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccH--------
Confidence 3567888777666655443 1 122345689999999999999999998653322 11111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHH-HHHcCCcEEEEEcCCCCHH----------------HHHHHHcccCCC--CCCcE
Q 043250 243 IKDLQKKLLSELLNDGNRRNIESQL-NRLARKKVLIVFDDVSHRR----------------QIESLIGCLDEL--ASGSR 303 (507)
Q Consensus 243 ~~~l~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~~~~ 303 (507)
.++.... .+ .....+..+. ......+.+|+||+++... .+..++..+... ..+..
T Consensus 122 -~~~~~~~----~g-~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 122 -SDFVEMF----VG-VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred -HHHHHHH----hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 1111100 00 0011122222 2234578899999995421 123343333221 23445
Q ss_pred EEEEeCchhhHh-h----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC-hHHHHHHHhhh-
Q 043250 304 VIITTRDKQVLK-T----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV-PLALKVLGCHL- 376 (507)
Q Consensus 304 iliTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~~l- 376 (507)
||.||..+.... . ......+.++..+.++-.+++..+........ ......+++.+.|. +--|..+....
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 666665543211 1 12456789999999888998887763322111 22355788888874 44444443211
Q ss_pred ----C-C---CCHHHHHHHHHHH
Q 043250 377 ----C-G---RSKEEWESAMRKL 391 (507)
Q Consensus 377 ----~-~---~~~~~~~~~l~~l 391 (507)
+ + -+...+..++...
T Consensus 273 ~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 273 LLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH
Confidence 1 1 2456666666554
No 126
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.00 E-value=0.0013 Score=65.24 Aligned_cols=189 Identities=16% Similarity=0.133 Sum_probs=110.2
Q ss_pred ccchHHHHHHhhhcCCCCceEEEEeccccchhhHHH-HHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHH---
Q 043250 179 VECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIA-GAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL--- 254 (507)
Q Consensus 179 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--- 254 (507)
|.+.+++|..||... ....|.|+||.|+||+.|+ .++.+.- ..+..+. +.......+-..+...+..++
T Consensus 1 R~e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~r----~~vL~ID-C~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKDR----KNVLVID-CDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhCC----CCEEEEE-ChHhhhccChHHHHHHHHHhcCCC
Confidence 566789999999743 3458999999999999999 5665431 2233332 332222222222222222221
Q ss_pred --------------------hcCCC--CCCHHH------------HHH-------------------HH---cCCcEEEE
Q 043250 255 --------------------LNDGN--RRNIES------------QLN-------------------RL---ARKKVLIV 278 (507)
Q Consensus 255 --------------------~~~~~--~~~~~~------------l~~-------------------~l---~~~~~LlV 278 (507)
.+... .+..+. |++ +| ...+-++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 11111 122221 111 01 11356899
Q ss_pred EcCCCC-----------HHHHHHHHcccCCCCCCcEEEEEeCchhhHhhc------CCceeEecCCCChHHHHHHHHHhh
Q 043250 279 FDDVSH-----------RRQIESLIGCLDELASGSRVIITTRDKQVLKTC------WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 279 lDdv~~-----------~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~------~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
|||+.. ..+|...+.. ++=.+||++|-+......+ .....+.|.-.+.+.|.++...+.
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 999932 1223333322 3445788888776443322 234678999999999999998887
Q ss_pred cCCCCC-------------C-----CChHHHHHHHHHHhCCChHHHHHHHhhhCC
Q 043250 342 FGGDHP-------------D-----ASHTELTDRAIKYAQGVPLALKVLGCHLCG 378 (507)
Q Consensus 342 ~~~~~~-------------~-----~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 378 (507)
-..... . ..........++.+||--.-|+.+++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 432100 0 124456677889999999999999988854
No 127
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00035 Score=68.67 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=96.3
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc---------------------cccceEEEEechhhhccC
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR---------------------HFEGSYFALNVREAEETG 241 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------------~f~~~~~~~~~~~~~~~~ 241 (507)
-+++.+.+.. +.-...+.++|+.|+||+++|..++..+-- ..+...++..... .
T Consensus 11 ~~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~-- 85 (334)
T PRK07993 11 YEQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--K-- 85 (334)
T ss_pred HHHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--c--
Confidence 3445555542 223567889999999999999999985421 1122222210000 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch-hh
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK-QV 313 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~-~~ 313 (507)
..-..+.+.++.+.+ .+++-++|+|+++. ......|+..+..-.+++.+|++|.+. .+
T Consensus 86 --------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 86 --------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARL 151 (334)
T ss_pred --------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 000012222333333 24566899999964 455677777776555667666666654 44
Q ss_pred Hhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHH
Q 043250 314 LKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLA 368 (507)
Q Consensus 314 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 368 (507)
++. ....+.+.+.+++.+++.+.+.... ....+.+..++..++|.|..
T Consensus 152 LpTIrSRCq~~~~~~~~~~~~~~~L~~~~-------~~~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 152 LATLRSRCRLHYLAPPPEQYALTWLSREV-------TMSQDALLAALRLSAGAPGA 200 (334)
T ss_pred hHHHHhccccccCCCCCHHHHHHHHHHcc-------CCCHHHHHHHHHHcCCCHHH
Confidence 443 2346678999999999999886542 11234477889999999963
No 128
>PRK12377 putative replication protein; Provisional
Probab=97.97 E-value=4.2e-05 Score=71.60 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=45.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
...+.|+|++|+|||+||.++++.+......+.++. ..+++..+...... ......+.+.+ .+.-|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~----------~~~l~~~l~~~~~~---~~~~~~~l~~l-~~~dL 166 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT----------VPDVMSRLHESYDN---GQSGEKFLQEL-CKVDL 166 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE----------HHHHHHHHHHHHhc---cchHHHHHHHh-cCCCE
Confidence 457899999999999999999998876655556654 22333333332211 11222344444 34558
Q ss_pred EEEcCC
Q 043250 277 IVFDDV 282 (507)
Q Consensus 277 lVlDdv 282 (507)
|||||+
T Consensus 167 LiIDDl 172 (248)
T PRK12377 167 LVLDEI 172 (248)
T ss_pred EEEcCC
Confidence 999999
No 129
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.95 E-value=0.00045 Score=65.53 Aligned_cols=195 Identities=16% Similarity=0.158 Sum_probs=111.1
Q ss_pred Ccccccc---chHHHHHHhhhcC-CCCceEEEEeccccchhhHHHHHHHhhhccccc------ceEEEEechhhhccCCH
Q 043250 174 KGLVGVE---CPIEEIESLLCIG-SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE------GSYFALNVREAEETGGI 243 (507)
Q Consensus 174 ~~~vGR~---~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 243 (507)
+.+||-. ..++.|.++|... ....+.+.|+|.+|+|||++++++.+.....++ .++.+. ..+..+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 3456643 3355666666643 345678999999999999999999986533332 123333 5567888
Q ss_pred HHHHHHHHHHHhcCCC-CCCHHH----HHHHHcC-CcEEEEEcCCCCH-----HHHHHHHcccCCCCC---CcEEEEEeC
Q 043250 244 KDLQKKLLSELLNDGN-RRNIES----QLNRLAR-KKVLIVFDDVSHR-----RQIESLIGCLDELAS---GSRVIITTR 309 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~-~~~~~~----l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~---~~~iliTtR 309 (507)
..+...++..++.... ...... ....++. +.-+||+|++.+. ..-+.++..+...++ =+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 8999999999887654 233322 3445544 4559999999542 222222222222222 233455554
Q ss_pred chhhHhhc-----CCceeEecCCCChHH-HHHHHHHhh--cCC-CCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 310 DKQVLKTC-----WASQIYQMKELVYAD-AHKLFCQCA--FGG-DHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 310 ~~~~~~~~-----~~~~~~~l~~L~~~e-a~~L~~~~~--~~~-~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
+-..+-.. +...++.++....++ ...|+.... +.- ....-...+++..|...++|+.--+..+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 33211110 123456777766554 444543322 111 1122345788999999999987554443
No 130
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.94 E-value=0.0002 Score=72.29 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=95.3
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCC
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNR 260 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 260 (507)
.-+.++.+.+.. ...++.|.|+-++|||||++.+.....+. .+++...........+.+....
T Consensus 24 ~~~~~l~~~~~~---~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~----------- 86 (398)
T COG1373 24 KLLPRLIKKLDL---RPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRA----------- 86 (398)
T ss_pred hhhHHHHhhccc---CCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHH-----------
Confidence 334445554432 22289999999999999997777665544 4554422111111111111111
Q ss_pred CCHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhhHhh------cCCceeEecCCCChHHHH
Q 043250 261 RNIESQLNRLARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQVLKT------CWASQIYQMKELVYADAH 334 (507)
Q Consensus 261 ~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~------~~~~~~~~l~~L~~~ea~ 334 (507)
+...-..++.+++||.|.....|...+..+...++. +|++|+.+...... .+....+++-||+..|-.
T Consensus 87 -----~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl 160 (398)
T COG1373 87 -----YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFL 160 (398)
T ss_pred -----HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHH
Confidence 111111277899999999999988888777665555 88888877654322 134567899999999987
Q ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 335 KLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 335 ~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
.+-.... ... .....-.-.-.+||.|.++..-
T Consensus 161 ~~~~~~~----~~~--~~~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 161 KLKGEEI----EPS--KLELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred hhccccc----chh--HHHHHHHHHHHhCCCcHHHhCc
Confidence 7543000 000 1111222334578888877543
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=97.93 E-value=0.00039 Score=67.01 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=72.2
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccc-c-cceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRH-F-EGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
..+.++|++|+|||++|+.+++.+... + ...-|+. .+ ..++.. ...+.. ......+.+.. ..-
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~l~~----~~~g~~-~~~~~~~l~~a--~gg 124 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDDLVG----QYIGHT-APKTKEVLKKA--MGG 124 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHHHHH----HHhccc-hHHHHHHHHHc--cCC
Confidence 458899999999999999998865321 1 1111322 11 111211 111111 01111222222 234
Q ss_pred EEEEcCCCCH-----------HHHHHHHcccCCCCCCcEEEEEeCchhhHh------h--cCCceeEecCCCChHHHHHH
Q 043250 276 LIVFDDVSHR-----------RQIESLIGCLDELASGSRVIITTRDKQVLK------T--CWASQIYQMKELVYADAHKL 336 (507)
Q Consensus 276 LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iliTtR~~~~~~------~--~~~~~~~~l~~L~~~ea~~L 336 (507)
+|+||++... +....++..+.....+..||+++....... . ......+.+++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 9999999642 334555555544445566777765433211 0 12345789999999999999
Q ss_pred HHHhhc
Q 043250 337 FCQCAF 342 (507)
Q Consensus 337 ~~~~~~ 342 (507)
+...+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 887763
No 132
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=6.3e-05 Score=79.44 Aligned_cols=57 Identities=23% Similarity=0.171 Sum_probs=45.5
Q ss_pred cccccccCCccccccchHHHHHHhhhcCC---CCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 166 DSTFQSENKGLVGVECPIEEIESLLCIGS---EGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 166 ~~~~~~~~~~~vGR~~el~~l~~~L~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....|...+.++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34445566789999999999999987532 3356799999999999999999998653
No 133
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00045 Score=68.10 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=87.1
Q ss_pred cccc-ccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc-cc--------------------ccceEEEE
Q 043250 175 GLVG-VECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS-RH--------------------FEGSYFAL 232 (507)
Q Consensus 175 ~~vG-R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~--------------------f~~~~~~~ 232 (507)
.++| -+.-++.|...+..+ .-.....++|+.|+|||++|..+++.+- .. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 555667777777532 2356779999999999999999988642 11 11222221
Q ss_pred echhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEE
Q 043250 233 NVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVI 305 (507)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~il 305 (507)
.. ..... .+.+..+.+.+ .+.+-++|+|+++. .+....|+..+.....++.+|
T Consensus 85 ~~---~~~i~-----------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PD---GQSIK-----------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cc---cccCC-----------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 00 00000 11222222222 23456899999964 345666777766555677777
Q ss_pred EEeCchh-hHhhc-CCceeEecCCCChHHHHHHHHHh
Q 043250 306 ITTRDKQ-VLKTC-WASQIYQMKELVYADAHKLFCQC 340 (507)
Q Consensus 306 iTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 340 (507)
++|.+.. +.+.. .....+++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7776543 33322 35678999999999998888653
No 134
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00069 Score=66.02 Aligned_cols=173 Identities=12% Similarity=0.082 Sum_probs=95.2
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-c-cc-ceEEEE-echh--hhccCCHHHHHHHHHHHHhcC
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-H-FE-GSYFAL-NVRE--AEETGGIKDLQKKLLSELLND 257 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~-f~-~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~~~ 257 (507)
+.|.+.+..+ .-...+.++|+.|+||+++|..++..+-- . .. ..|=.+ ..+. ...++++..+.- .-+..
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p----~~~~~ 86 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP----IDNKD 86 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc----ccCCC
Confidence 3455555422 23457889999999999999999985421 1 00 000000 0000 000001000000 00000
Q ss_pred CCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch-hhHhh-cCCceeEecCCC
Q 043250 258 GNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK-QVLKT-CWASQIYQMKEL 328 (507)
Q Consensus 258 ~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L 328 (507)
-..+.+.++.+.+ .++.-++|+|+++. ......|+..+..-.+++.+|++|.+. .+++. ......+.+.++
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~ 166 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPP 166 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCC
Confidence 0122222233333 24556888999964 445677777776556677777776655 44433 234678999999
Q ss_pred ChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHH
Q 043250 329 VYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLA 368 (507)
Q Consensus 329 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 368 (507)
+.+++.+.+.... . .....+..++..++|.|+.
T Consensus 167 ~~~~~~~~L~~~~--~-----~~~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 167 EEQQALDWLQAQS--S-----AEISEILTALRINYGRPLL 199 (325)
T ss_pred CHHHHHHHHHHHh--c-----cChHHHHHHHHHcCCCHHH
Confidence 9999999987654 1 1122366778899999963
No 135
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.90 E-value=2.9e-05 Score=76.25 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=61.1
Q ss_pred HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHH
Q 043250 186 IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIE 264 (507)
Q Consensus 186 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 264 (507)
+.+++.+ -+..+..+|.|++|+|||||++.+++.+.. +|+..+|+..+++. ...+.++++.+...+..........
T Consensus 159 vID~l~P-IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 159 IIDLIAP-IGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeecc-cccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHH
Confidence 3444442 233456789999999999999999997654 68888999866552 2356777777753322211111111
Q ss_pred H----------HHHH--HcCCcEEEEEcCCCC
Q 043250 265 S----------QLNR--LARKKVLIVFDDVSH 284 (507)
Q Consensus 265 ~----------l~~~--l~~~~~LlVlDdv~~ 284 (507)
. ..++ ..++++||++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1 1112 367999999999953
No 136
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=0.00025 Score=68.36 Aligned_cols=158 Identities=18% Similarity=0.236 Sum_probs=99.4
Q ss_pred CCccccccchHHHHHHhhhcCCCC-ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIGSEG-VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 251 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 251 (507)
.+.+.+|+.++..+..++...+.. +..|.|+|.+|.|||.+.+++.+... -..+|+. .-+......++.+++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHHH
Confidence 357899999999999999765543 44568999999999999999998762 2457887 444577888888888
Q ss_pred HHHh-cCCCCC-------CHHH----HHH--HHc--CCcEEEEEcCCCCHHHHH-----HHH---cccCCCCCCcEEEEE
Q 043250 252 SELL-NDGNRR-------NIES----QLN--RLA--RKKVLIVFDDVSHRRQIE-----SLI---GCLDELASGSRVIIT 307 (507)
Q Consensus 252 ~~~~-~~~~~~-------~~~~----l~~--~l~--~~~~LlVlDdv~~~~~~~-----~l~---~~l~~~~~~~~iliT 307 (507)
.... ...+.. ++.. +.+ ... ++.++|||||++...+.+ .++ ..++ .+. .+|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~-i~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPT-IVIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCc-eEEEE
Confidence 8874 222211 1111 222 122 358999999997654422 221 1111 233 34444
Q ss_pred eCchh---hHhhcCC--ceeEecCCCChHHHHHHHHHh
Q 043250 308 TRDKQ---VLKTCWA--SQIYQMKELVYADAHKLFCQC 340 (507)
Q Consensus 308 tR~~~---~~~~~~~--~~~~~l~~L~~~ea~~L~~~~ 340 (507)
+-... ....++. .-++..+..+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43221 1211222 235678888999999888543
No 137
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.89 E-value=1.5e-05 Score=69.23 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=55.2
Q ss_pred cEEEcCccccc-cCchHHHHHHHHhhC-CCceEeeC-CCCC--CCcccHHHHHHhhhcceEEEEecCCC
Q 043250 3 DVFLSFRGEDT-RDNFTSILHYVLSLK-SIKTFIDD-QLIR--GENISHSLLDTIEASSISIIIFSQRY 66 (507)
Q Consensus 3 dvFis~~~~d~-~~~~~~~l~~~l~~~-g~~~~~d~-~~~~--g~~~~~~i~~~i~~s~~~i~v~s~~y 66 (507)
-|||||++... ...+|..|++.|+.. |+.|.+|. +... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 38999998653 446799999999999 99999998 7643 77899999999999999999999655
No 138
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.88 E-value=4.1e-05 Score=71.79 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=56.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC-CCCHH------H--
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN-RRNIE------S-- 265 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~------~-- 265 (507)
....++|.|++|+|||||++.+++.+.. +|+..+|+..+.+ ...++.++++.+...+..... ..... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999997654 5888888874433 135677777777332221111 11111 1
Q ss_pred --HHH-HHcCCcEEEEEcCCCCH
Q 043250 266 --QLN-RLARKKVLIVFDDVSHR 285 (507)
Q Consensus 266 --l~~-~l~~~~~LlVlDdv~~~ 285 (507)
... .-.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 111 13478999999999543
No 139
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.87 E-value=2e-05 Score=70.20 Aligned_cols=72 Identities=31% Similarity=0.367 Sum_probs=44.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
..-+.|+|++|+|||.||..+++.+..+-..+.|+. ..+++..+-. .........+.+.+.+- =|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~----------~~~L~~~l~~----~~~~~~~~~~~~~l~~~-dl 111 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT----------ASDLLDELKQ----SRSDGSYEELLKRLKRV-DL 111 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----------HHHHHHHHHC----CHCCTTHCHHHHHHHTS-SC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee----------cCceeccccc----cccccchhhhcCccccc-cE
Confidence 346899999999999999999997766545566664 3334444322 22223344455556544 47
Q ss_pred EEEcCCC
Q 043250 277 IVFDDVS 283 (507)
Q Consensus 277 lVlDdv~ 283 (507)
|||||+-
T Consensus 112 LilDDlG 118 (178)
T PF01695_consen 112 LILDDLG 118 (178)
T ss_dssp EEEETCT
T ss_pred ecccccc
Confidence 7799993
No 140
>PRK09183 transposase/IS protein; Provisional
Probab=97.87 E-value=3.3e-05 Score=73.24 Aligned_cols=99 Identities=20% Similarity=0.250 Sum_probs=52.9
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLI 277 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 277 (507)
..+.|+|++|+|||+||..++.........+.|+. ..++...+..... ...+...........-++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~----------~~~l~~~l~~a~~----~~~~~~~~~~~~~~~dlL 168 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT----------AADLLLQLSTAQR----QGRYKTTLQRGVMAPRLL 168 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe----------HHHHHHHHHHHHH----CCcHHHHHHHHhcCCCEE
Confidence 45889999999999999999886544333344443 1222222221111 112222222223455699
Q ss_pred EEcCCCC----HHHHHHHHcccCC-CCCCcEEEEEeCch
Q 043250 278 VFDDVSH----RRQIESLIGCLDE-LASGSRVIITTRDK 311 (507)
Q Consensus 278 VlDdv~~----~~~~~~l~~~l~~-~~~~~~iliTtR~~ 311 (507)
||||+.. ......+...+.. ...++ +|+||...
T Consensus 169 iiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 169 IIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred EEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 9999942 2332233333321 12344 78888754
No 141
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.0012 Score=64.22 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=95.5
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc-cc-------------------ccceEEEEechhhhccCCH
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS-RH-------------------FEGSYFALNVREAEETGGI 243 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~-------------------f~~~~~~~~~~~~~~~~~~ 243 (507)
+.+.+.+.. ..-...+.++|+.|+||+++|..+++.+- .+ ++...++.... ....-.
T Consensus 13 ~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I~- 89 (319)
T PRK06090 13 QNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSIT- 89 (319)
T ss_pred HHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcCC-
Confidence 345555532 22356789999999999999999988531 11 12222221100 000000
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch-hhHh
Q 043250 244 KDLQKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK-QVLK 315 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~ 315 (507)
.+.+.++.+.+ .++.-++|+|+++. ......++..+..-.+++.+|++|.+. .+++
T Consensus 90 ----------------vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (319)
T PRK06090 90 ----------------VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLP 153 (319)
T ss_pred ----------------HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 11222222232 23455889999964 455667777766555667666666554 4444
Q ss_pred hc-CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 316 TC-WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 316 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
.. .....+.+.+++.+++.+.+..... . ....++..++|.|+....+
T Consensus 154 TI~SRCq~~~~~~~~~~~~~~~L~~~~~-----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 154 TIVSRCQQWVVTPPSTAQAMQWLKGQGI-----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHhcceeEeCCCCCHHHHHHHHHHcCC-----c-----hHHHHHHHcCCCHHHHHHH
Confidence 33 3567899999999999999865421 1 1356789999999866554
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00047 Score=70.63 Aligned_cols=189 Identities=17% Similarity=0.213 Sum_probs=112.0
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh-ccc---ccceEEEEechhhhccCCHHHH
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI-SRH---FEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~---f~~~~~~~~~~~~~~~~~~~~l 246 (507)
..-++++|-+.-...|...+..+. -......+|+-|+||||+|+-++.-+ +.+ ...+.=...+..+... ...++
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g-~~~Dv 90 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEG-SLIDV 90 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcC-Ccccc
Confidence 344678999999999999987432 24557899999999999999999843 111 1100000000111111 11111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCchh-hH-hhc
Q 043250 247 QKKLLSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDKQ-VL-KTC 317 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~~-~~-~~~ 317 (507)
.+ -........++++++.+.. .++.=+.|+|+|. +...+..|+..+..-.+....|+.|.+.. +. ...
T Consensus 91 iE---iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 91 IE---IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred hh---hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 10 0000011133444454444 3355589999995 45668888888775555666666665553 32 223
Q ss_pred CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 318 WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 318 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
..++.|.++.++.++....+...+-.. .-..+.+....|++..+|-.
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E--~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKE--GINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHcCCCh
Confidence 456789999999999999887776322 22344566777777777744
No 143
>PRK06526 transposase; Provisional
Probab=97.83 E-value=3.1e-05 Score=73.04 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=53.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
...+.|+|++|+|||+||..++.........+.|.. ..++...+.... ...........+. +.-|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t----------~~~l~~~l~~~~----~~~~~~~~l~~l~-~~dl 162 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT----------AAQWVARLAAAH----HAGRLQAELVKLG-RYPL 162 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh----------HHHHHHHHHHHH----hcCcHHHHHHHhc-cCCE
Confidence 346899999999999999999987654433333432 233333333221 1112222223332 3458
Q ss_pred EEEcCCCC----HHHHHHHHcccCC-CCCCcEEEEEeCch
Q 043250 277 IVFDDVSH----RRQIESLIGCLDE-LASGSRVIITTRDK 311 (507)
Q Consensus 277 lVlDdv~~----~~~~~~l~~~l~~-~~~~~~iliTtR~~ 311 (507)
|||||+.. ....+.+...+.. ...++ +|+||..+
T Consensus 163 LIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 163 LIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 99999952 2222223222211 12344 88888765
No 144
>PRK06921 hypothetical protein; Provisional
Probab=97.80 E-value=5.3e-05 Score=72.06 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=29.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAL 232 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 232 (507)
...+.++|.+|+|||+||..+++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999987665 44556665
No 145
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.79 E-value=0.00033 Score=76.85 Aligned_cols=172 Identities=18% Similarity=0.237 Sum_probs=95.3
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGG 242 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (507)
..+.|.+...+.|.+.+.- +-...+-+.++|++|+|||+||+.+++.....| +.....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~------ 522 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE------ 522 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH------
Confidence 4567877777777665531 112345689999999999999999999765433 1111111
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCCcEEEEEcCCCCH--------------HHHHHHHcccCCC--CCCcEEE
Q 043250 243 IKDLQKKLLSELLNDGNRRNIESQLNR-LARKKVLIVFDDVSHR--------------RQIESLIGCLDEL--ASGSRVI 305 (507)
Q Consensus 243 ~~~l~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--------------~~~~~l~~~l~~~--~~~~~il 305 (507)
++....++. ...+..+... -...+.+|+||+++.. ..+..++..+... ..+..||
T Consensus 523 -------l~~~~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 523 -------ILSKWVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred -------HhhcccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 111100000 1112222222 2456899999998532 1233444444321 2344566
Q ss_pred EEeCchhhHh-hc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 306 ITTRDKQVLK-TC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 306 iTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.||..+.... .. .....+.++..+.++-.++|..+..+..... ......+++.+.|.-
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~s 657 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYT 657 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCC
Confidence 6775554322 11 2456788999999998998876653222111 112566777777654
No 146
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.78 E-value=4.9e-05 Score=64.51 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=26.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
..+.|+|++|+||||+++.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5689999999999999999999876654234444
No 147
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00031 Score=71.50 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=93.1
Q ss_pred CccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCH
Q 043250 174 KGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGI 243 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (507)
..+=|.+..+.+|.+++.. +-..++-|.+||+||+|||.||++++.++.-.| +. ++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp--- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP--- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch---
Confidence 5677899999998887643 113467899999999999999999998764432 22 1100
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHH-HHHcCCcEEEEEcCCCCHH-------------HHHHHHcccCCC------CCCcE
Q 043250 244 KDLQKKLLSELLNDGNRRNIESQL-NRLARKKVLIVFDDVSHRR-------------QIESLIGCLDEL------ASGSR 303 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~------~~~~~ 303 (507)
.+...+.++. ...+.++. +....-+++++||+++... .+.+|+..+... +.+.-
T Consensus 258 -----eivSGvSGES-EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 258 -----EIVSGVSGES-EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred -----hhhcccCccc-HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 1111111111 11222222 2335689999999996321 134444443321 22333
Q ss_pred EEE-EeCchhhHhhcC----CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 304 VII-TTRDKQVLKTCW----ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 304 ili-TtR~~~~~~~~~----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
||- |+|...+-+.+. ..+.+.+.--+...-.+.|...+-+-...... ...+|++.+-|+
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~---d~~qlA~lTPGf 395 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF---DFKQLAKLTPGF 395 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc---CHHHHHhcCCCc
Confidence 333 455554433332 34567777767666666665554222211111 145566666554
No 148
>PRK10536 hypothetical protein; Provisional
Probab=97.77 E-value=0.00014 Score=67.50 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=75.4
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh-h-cccccceEEEEechhhhc-----cCCHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK-I-SRHFEGSYFALNVREAEE-----TGGIKD 245 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~~~~ 245 (507)
...+.+|......+..++.. ...+.+.|++|+|||+||.+++.+ + ...|...+.....-.... +.+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 35677888888888888853 248999999999999999998874 3 344544443321111110 111212
Q ss_pred HHHHHHH----HHhcCCCCCCHHH------------HHHHHcCCcE---EEEEcCCCC--HHHHHHHHcccCCCCCCcEE
Q 043250 246 LQKKLLS----ELLNDGNRRNIES------------QLNRLARKKV---LIVFDDVSH--RRQIESLIGCLDELASGSRV 304 (507)
Q Consensus 246 l~~~l~~----~~~~~~~~~~~~~------------l~~~l~~~~~---LlVlDdv~~--~~~~~~l~~~l~~~~~~~~i 304 (507)
-....+. .+..--....++. -..+++++.+ ++|+|++.+ ..+...++.. .+.+|++
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 1111111 1111000011111 2345666554 999999954 4556666544 3689999
Q ss_pred EEEeCch
Q 043250 305 IITTRDK 311 (507)
Q Consensus 305 liTtR~~ 311 (507)
|+|--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9987654
No 149
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.76 E-value=0.00052 Score=65.40 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.+.|.|++|+|||+||+.+++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999865
No 150
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.75 E-value=0.0013 Score=64.04 Aligned_cols=151 Identities=22% Similarity=0.244 Sum_probs=82.4
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc--cCCHHHHHHHHHHHHhcCCCCCCHHHHHHH--H
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE--TGGIKDLQKKLLSELLNDGNRRNIESQLNR--L 270 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~--l 270 (507)
..++.++|||++|+|||.+|+.++.++...| ...+..+... .......+++++... .+. -
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A------------~~~a~~ 209 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREA------------ADIIKK 209 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHH------------HHHhhc
Confidence 4578899999999999999999999875442 2222222211 122333333333321 111 2
Q ss_pred cCCcEEEEEcCCCCH------------HHH--HHHHcccC--------------CCCCCcEEEEEeCchhhHhh-c-C--
Q 043250 271 ARKKVLIVFDDVSHR------------RQI--ESLIGCLD--------------ELASGSRVIITTRDKQVLKT-C-W-- 318 (507)
Q Consensus 271 ~~~~~LlVlDdv~~~------------~~~--~~l~~~l~--------------~~~~~~~iliTtR~~~~~~~-~-~-- 318 (507)
++++++|+||+++.. .++ ..|+..+. ...++..||+||.++..+.. + .
T Consensus 210 ~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpG 289 (413)
T PLN00020 210 KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDG 289 (413)
T ss_pred cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCC
Confidence 468999999999521 111 23332211 12345667888866654221 1 1
Q ss_pred -CceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH
Q 043250 319 -ASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL 367 (507)
Q Consensus 319 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 367 (507)
....+ ..-+.++-.+++..+. .....+ .....+|++...|-|+
T Consensus 290 RfDk~i--~lPd~e~R~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 290 RMEKFY--WAPTREDRIGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCcee--CCCCHHHHHHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence 12223 3345555566665544 222222 3556677777777765
No 151
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.0017 Score=71.24 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=64.8
Q ss_pred CCccccccchHHHHHHhhhcC------C-CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIG------S-EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
...++|.+..++.+...+... . .....+.++|++|+|||.||+.+++.+... .+.+. ..+......+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~d-~se~~~~~~~~~ 528 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERFD-MSEYMEKHTVSR 528 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEEe-CchhhhcccHHH
Confidence 457899999999888877531 1 123468899999999999999999876322 22222 222222222222
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHcCC-cEEEEEcCCCC--HHHHHHHHccc
Q 043250 246 LQKKLLSELLNDGNRRNIESQLNRLARK-KVLIVFDDVSH--RRQIESLIGCL 295 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~--~~~~~~l~~~l 295 (507)
+. ....+....+.-..+.+.++.+ ..+++||+++. .+....|+..+
T Consensus 529 li----g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 529 LI----GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred Hh----cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 21 1100000112222345555444 45999999963 44455555544
No 152
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.73 E-value=0.0004 Score=76.21 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=92.8
Q ss_pred CccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhh-ccC
Q 043250 174 KGLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAE-ETG 241 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~ 241 (507)
+.+.|.+..+++|.+++.. +-...+.+.|+|++|+|||+||+.+++.....| +.+. ..... ...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~~ 253 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKYY 253 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcccc
Confidence 4578999999988877632 112346789999999999999999998764332 2221 11110 000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHH-HHHHcCCcEEEEEcCCCCH-------------HHHHHHHcccCCC-CCCcEEEE
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQ-LNRLARKKVLIVFDDVSHR-------------RQIESLIGCLDEL-ASGSRVII 306 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~-~~~~~ili 306 (507)
+.. ...+..+ .....+.+.+|+||+++.. .....++..+... ..+..++|
T Consensus 254 g~~---------------~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 254 GES---------------EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred cHH---------------HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 000 0011111 1223456789999998532 1123344333222 22333344
Q ss_pred -EeCchh-hHhhc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 307 -TTRDKQ-VLKTC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 307 -TtR~~~-~~~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
||.... +...+ .....+.+...+.++-.+++..+.-..... .......+++.+.|..
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFV 381 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCC
Confidence 444332 21111 124567888888888888887654221111 1123567778887764
No 153
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.72 E-value=0.00012 Score=72.39 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=58.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC----HH---H--
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRN----IE---S-- 265 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~---~-- 265 (507)
....++|+|++|+|||||++.+++.+..+ |+..+|+..+++ ....+.++++.+...+........ .. .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 45678999999999999999999977655 888888875533 235788888887544332211111 11 1
Q ss_pred --HHH-HHcCCcEEEEEcCCCCH
Q 043250 266 --QLN-RLARKKVLIVFDDVSHR 285 (507)
Q Consensus 266 --l~~-~l~~~~~LlVlDdv~~~ 285 (507)
... .-.+++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 111 13578999999999543
No 154
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00011 Score=69.24 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=29.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh----cccccceEEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI----SRHFEGSYFAL 232 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~----~~~f~~~~~~~ 232 (507)
.|+|.++||||.|||+|++++++++ .+.|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 6899999999999999999999954 45566666665
No 155
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.71 E-value=0.00026 Score=68.71 Aligned_cols=100 Identities=14% Similarity=0.293 Sum_probs=58.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
.+-+.|+|.+|+|||.||.++++.+...-..+.|+. ...++..+...... .......+.+. +-=|
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----------~~~l~~~lk~~~~~----~~~~~~l~~l~-~~dl 220 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----------FPEFIRELKNSISD----GSVKEKIDAVK-EAPV 220 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----------HHHHHHHHHHHHhc----CcHHHHHHHhc-CCCE
Confidence 456899999999999999999998876544455554 22344444333321 12334444444 3458
Q ss_pred EEEcCCC--CHHHHH--HHHccc-CC-CCCCcEEEEEeCch
Q 043250 277 IVFDDVS--HRRQIE--SLIGCL-DE-LASGSRVIITTRDK 311 (507)
Q Consensus 277 lVlDdv~--~~~~~~--~l~~~l-~~-~~~~~~iliTtR~~ 311 (507)
|||||+. ....|. .++..+ .. ...+..+|+||--.
T Consensus 221 LiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 221 LMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 9999993 222232 233322 11 12445678888643
No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=97.70 E-value=0.0018 Score=70.61 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=92.3
Q ss_pred Eec--cccchhhHHHHHHHhhhcc-cccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEE
Q 043250 202 IWG--IGGIGKTTIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIV 278 (507)
Q Consensus 202 I~G--~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlV 278 (507)
+.| |.++||||+|..+++++.. .+...+.-.+... ..++..+ +++........+. -..+.-++|
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd---~rgid~I-R~iIk~~a~~~~~---------~~~~~KVvI 635 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD---ERGINVI-REKVKEFARTKPI---------GGASFKIIF 635 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC---cccHHHH-HHHHHHHHhcCCc---------CCCCCEEEE
Confidence 347 7899999999999998633 2333333332222 1233322 2332222111100 012457999
Q ss_pred EcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCch-hhHhh-cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHH
Q 043250 279 FDDVSHR--RQIESLIGCLDELASGSRVIITTRDK-QVLKT-CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTEL 354 (507)
Q Consensus 279 lDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~ 354 (507)
||+++.. ++...|+..+......+++|++|.+. .+.+. ...+..+++.+++.++..+.+...+-... -....+.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i~i~~e~ 713 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LELTEEG 713 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--CCCCHHH
Confidence 9999754 45666666665445566776666554 33322 23568899999999999988876553221 1223567
Q ss_pred HHHHHHHhCCChHHHHHH
Q 043250 355 TDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 355 ~~~i~~~~~G~PLal~~~ 372 (507)
+..|++.++|.+.....+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 889999999988544333
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.69 E-value=0.0019 Score=71.92 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCccccccchHHHHHHhhhcC------C-CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIG------S-EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
...++|.+..++.+...+... . .....+.++|++|+|||++|+.++..+.......+.+. ...........
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~~~~- 641 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKHSVA- 641 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccchHH-
Confidence 356899999999998887641 1 12456889999999999999999987654323333332 22221111111
Q ss_pred HHHHHHHHHhcCCC---CCCHHHHHHHHcCC-cEEEEEcCCCC--HHHHHHHHcccCCC-----------CCCcEEEEEe
Q 043250 246 LQKKLLSELLNDGN---RRNIESQLNRLARK-KVLIVFDDVSH--RRQIESLIGCLDEL-----------ASGSRVIITT 308 (507)
Q Consensus 246 l~~~l~~~~~~~~~---~~~~~~l~~~l~~~-~~LlVlDdv~~--~~~~~~l~~~l~~~-----------~~~~~iliTt 308 (507)
.+ ++.... ...-..+...++.+ ..+|+||+++. .+....|+..+... -..+-||+||
T Consensus 642 ---~l---~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 642 ---RL---IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred ---Hh---cCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 11 111111 11122344444433 45899999963 44555555544321 1234477777
Q ss_pred Cc
Q 043250 309 RD 310 (507)
Q Consensus 309 R~ 310 (507)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 64
No 158
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.67 E-value=0.0012 Score=65.04 Aligned_cols=149 Identities=19% Similarity=0.150 Sum_probs=83.6
Q ss_pred ccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc---------------------cceEEEEe
Q 043250 175 GLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSYFALN 233 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~ 233 (507)
.++|-+.....+..+..........+.++|++|+||||+|..+++.+.... +....+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777777888877764333444699999999999999999999765322 22222220
Q ss_pred chhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 234 VREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
. .........+..+.+........ ..++.-++++|+++.. +....++..+......+.+|++|.+.
T Consensus 82 s-~~~~~~i~~~~vr~~~~~~~~~~-----------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 82 S-DLRKIDIIVEQVRELAEFLSESP-----------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred c-ccCCCcchHHHHHHHHHHhccCC-----------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 0 00000012222222222221110 0346679999999754 34555665555556777887777644
Q ss_pred -hhHhhc-CCceeEecCCCChHHHHH
Q 043250 312 -QVLKTC-WASQIYQMKELVYADAHK 335 (507)
Q Consensus 312 -~~~~~~-~~~~~~~l~~L~~~ea~~ 335 (507)
.+.+.. ..+..+++.+.+..+...
T Consensus 150 ~~il~tI~SRc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 150 SKILPTIRSRCQRIRFKPPSRLEAIA 175 (325)
T ss_pred hhccchhhhcceeeecCCchHHHHHH
Confidence 333322 245677777744444433
No 159
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00095 Score=66.97 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=74.3
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH-HHHHHhcCCCCCCHHHHHHHHcCC
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK-LLSELLNDGNRRNIESQLNRLARK 273 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~l~~~l~~~ 273 (507)
.+...+.++|++|+|||+||..++.. ..|+.+-.++ ...--++.+-.+. ..... ....-+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~~i~k~-----------F~DAYkS~ 598 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCAHIKKI-----------FEDAYKSP 598 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHHHHHHH-----------HHHhhcCc
Confidence 45678899999999999999999864 4576555443 1110111111110 00000 12223445
Q ss_pred cEEEEEcCCCCHHH------------HHHH---HcccCCCCCCcEEEEEeCchhhHhhcC----CceeEecCCCCh-HHH
Q 043250 274 KVLIVFDDVSHRRQ------------IESL---IGCLDELASGSRVIITTRDKQVLKTCW----ASQIYQMKELVY-ADA 333 (507)
Q Consensus 274 ~~LlVlDdv~~~~~------------~~~l---~~~l~~~~~~~~iliTtR~~~~~~~~~----~~~~~~l~~L~~-~ea 333 (507)
--.||+||++..-+ ++.| +...+..++.--|+-||....++..++ ....+.++.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 56899999954322 3333 333332233334556777777877775 345789999987 667
Q ss_pred HHHHHHh
Q 043250 334 HKLFCQC 340 (507)
Q Consensus 334 ~~L~~~~ 340 (507)
.+.++..
T Consensus 679 ~~vl~~~ 685 (744)
T KOG0741|consen 679 LEVLEEL 685 (744)
T ss_pred HHHHHHc
Confidence 7776554
No 160
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.63 E-value=0.0015 Score=67.92 Aligned_cols=201 Identities=13% Similarity=0.141 Sum_probs=117.3
Q ss_pred cCCccccccchHHHHHHhhhc--CC-CCceEEEEeccccchhhHHHHHHHhhhc-----ccccceEEEEechhhhccCCH
Q 043250 172 ENKGLVGVECPIEEIESLLCI--GS-EGVCKLGIWGIGGIGKTTIAGAVFNKIS-----RHFEGSYFALNVREAEETGGI 243 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~--~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~ 243 (507)
.+..+-+|+.|..+|...+.. .. +....+-|+|.||+|||+.+..+.+.+. ..-+.-.|+. + +.-.-...
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-I-Ngm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-I-NGLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-E-cceeecCH
Confidence 567889999999999998864 22 3455889999999999999999998553 1222222222 0 02223557
Q ss_pred HHHHHHHHHHHhcCCC--CCCHHHHHHHHc-----CCcEEEEEcCCCCHHH--HHHHHcccCC-CCCCcEEEEEe-Cchh
Q 043250 244 KDLQKKLLSELLNDGN--RRNIESQLNRLA-----RKKVLIVFDDVSHRRQ--IESLIGCLDE-LASGSRVIITT-RDKQ 312 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~--~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~l~~-~~~~~~iliTt-R~~~ 312 (507)
.++...|...+.+... ...++.+..+.. .+++++++|+++..-. -+-+...+.| ..++++++|.+ -+..
T Consensus 472 ~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 7888888888766544 223344554443 3678999999964321 1222233333 24677765543 2211
Q ss_pred ----------hHhhcCCceeEecCCCChHHHHHHHHHhhcCCCCC-CCChHHHHHHHHHHhCCChHHHHHHHhh
Q 043250 313 ----------VLKTCWASQIYQMKELVYADAHKLFCQCAFGGDHP-DASHTELTDRAIKYAQGVPLALKVLGCH 375 (507)
Q Consensus 313 ----------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~ 375 (507)
+...+ ....+...|.+.++-.+.+..+..+.... ....+-.+++++...|..-.|+...-+.
T Consensus 552 dlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11111 23457788888888888887766333211 1222334455555555555555554433
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00047 Score=73.63 Aligned_cols=151 Identities=15% Similarity=0.158 Sum_probs=85.8
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-cc-----ceEEEEechhhhccCCHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FE-----GSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~l~ 247 (507)
+..+||+.|++++.+.|.....+.+ .++|.||+|||+++.-++.++... -+ ..++-.++...-....+.--+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF 247 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF 247 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence 5689999999999999986444333 368999999999999999876432 11 223332222211110000000
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHc-CCcEEEEEcCCCCH----------HHHHHH-HcccCCCCCCcEEEEEeCchhh--
Q 043250 248 KKLLSELLNDGNRRNIESQLNRLA-RKKVLIVFDDVSHR----------RQIESL-IGCLDELASGSRVIITTRDKQV-- 313 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~----------~~~~~l-~~~l~~~~~~~~iliTtR~~~~-- 313 (507)
.+.+..+.+.+. ..+++|++|.+... .+..++ .+.+.. +.--.|=.||-++.-
T Consensus 248 ------------EeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~ 314 (786)
T COG0542 248 ------------EERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKY 314 (786)
T ss_pred ------------HHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHH
Confidence 112222333333 35899999998421 122333 333331 222234556654422
Q ss_pred ----HhhcCCceeEecCCCChHHHHHHHHH
Q 043250 314 ----LKTCWASQIYQMKELVYADAHKLFCQ 339 (507)
Q Consensus 314 ----~~~~~~~~~~~l~~L~~~ea~~L~~~ 339 (507)
.......+.+.|...+.+++...++.
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 11112456788999999999988865
No 162
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00099 Score=69.15 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=86.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
..-|.|.|+.|+|||+||+++++.+...-.+.+-+..+... ....+..++..+-.- ..+.+...+-+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l-~~~~~e~iQk~l~~v------------fse~~~~~PSi 497 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTL-DGSSLEKIQKFLNNV------------FSEALWYAPSI 497 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhc-cchhHHHHHHHHHHH------------HHHHHhhCCcE
Confidence 45689999999999999999999876443333322222221 112233333222211 34556778999
Q ss_pred EEEcCCCCHH---------------HHHHHH----cccCCCCCCcEEEEEeCchhhHh-----hcCCceeEecCCCChHH
Q 043250 277 IVFDDVSHRR---------------QIESLI----GCLDELASGSRVIITTRDKQVLK-----TCWASQIYQMKELVYAD 332 (507)
Q Consensus 277 lVlDdv~~~~---------------~~~~l~----~~l~~~~~~~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~e 332 (507)
+||||++... .+..++ ......+....+|.|........ .........+.++...+
T Consensus 498 IvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 498 IVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTR 577 (952)
T ss_pred EEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhH
Confidence 9999995311 011111 11111122223455554432211 11234567899998888
Q ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC-hHHHHHH
Q 043250 333 AHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV-PLALKVL 372 (507)
Q Consensus 333 a~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 372 (507)
-.++++...- ... .....+..+-+..+|+|. |.-+.++
T Consensus 578 R~~IL~~~~s-~~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 578 RKEILTTIFS-KNL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHHHHHHHHH-hhh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 8877766542 111 222344455588888775 4444444
No 163
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.61 E-value=0.00045 Score=63.17 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=97.0
Q ss_pred CccccccchHHH---HHHhhhcC----CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHH
Q 043250 174 KGLVGVECPIEE---IESLLCIG----SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 246 (507)
Q Consensus 174 ~~~vGR~~el~~---l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 246 (507)
+..||.+..... |.+.|... .-.++-|..+|++|.|||.+|++++++...-| ..... .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka---------t-- 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA---------T-- 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech---------H--
Confidence 467887765543 45556432 22478899999999999999999998754321 11111 1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHH-HcCCcEEEEEcCCCCH--------------HHHHHHHcccCC--CCCCcEEEEEeC
Q 043250 247 QKKLLSELLNDGNRRNIESQLNR-LARKKVLIVFDDVSHR--------------RQIESLIGCLDE--LASGSRVIITTR 309 (507)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--------------~~~~~l~~~l~~--~~~~~~iliTtR 309 (507)
+++....++. ...+.++-++ -+.-+|+++||.++.. +.+.+|+..+.. .+.|...|..|.
T Consensus 186 --~liGehVGdg-ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 186 --ELIGEHVGDG-ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred --HHHHHHhhhH-HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 1111111110 1112222222 2347999999998532 235666666543 234555566665
Q ss_pred chhhHhhc---CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCC
Q 043250 310 DKQVLKTC---WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGV 365 (507)
Q Consensus 310 ~~~~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 365 (507)
++..+... .....++...-+.+|-..++...+-.-..+.. .-.+.++.+++|.
T Consensus 263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 55443321 23456777888889999999887732222221 1256677777764
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.61 E-value=0.00068 Score=75.21 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCccccccchHHHHHHhhhcC-------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIG-------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
...++|.+..++.+...+... ......+.++|++|+|||+||+.+++.+.......+.+. .........
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~~~--- 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEKHS--- 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhhhh---
Confidence 356899999999988877531 112247889999999999999999986643323333332 222211111
Q ss_pred HHHHHHHHHhcCCC----CCCHHHHHHHHcCC-cEEEEEcCCC--CHHHHHHHHccc
Q 043250 246 LQKKLLSELLNDGN----RRNIESQLNRLARK-KVLIVFDDVS--HRRQIESLIGCL 295 (507)
Q Consensus 246 l~~~l~~~~~~~~~----~~~~~~l~~~l~~~-~~LlVlDdv~--~~~~~~~l~~~l 295 (507)
...+.+..+ .+.-..+.+.++.+ .-+|+||+++ +......++..+
T Consensus 643 -----~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 643 -----VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred -----HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 111111111 11112234444333 3699999996 455555555544
No 165
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00035 Score=65.94 Aligned_cols=73 Identities=29% Similarity=0.327 Sum_probs=45.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHcCCc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIE-SQLNRLARKK 274 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~l~~~l~~~~ 274 (507)
...-+.++|.+|+|||.||.++++++......+.|+. ..+++.++...... ...+ .+.+.+. +-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~----~~~~~~l~~~l~-~~ 168 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDE----GRLEEKLLRELK-KV 168 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhc----CchHHHHHHHhh-cC
Confidence 3456899999999999999999999884434445543 34444444443322 1111 1233232 23
Q ss_pred EEEEEcCCC
Q 043250 275 VLIVFDDVS 283 (507)
Q Consensus 275 ~LlVlDdv~ 283 (507)
=||||||+-
T Consensus 169 dlLIiDDlG 177 (254)
T COG1484 169 DLLIIDDIG 177 (254)
T ss_pred CEEEEeccc
Confidence 389999993
No 166
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0091 Score=58.72 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=59.8
Q ss_pred CcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCc-hhhHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCC
Q 043250 273 KKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRD-KQVLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPD 348 (507)
Q Consensus 273 ~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 348 (507)
+.-++|+|+++ +......|+..+..-.+++.+|++|.+ ..+++.. .....+.+.+++.++..+.+.... . .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 44588899996 445677777777655667766655554 4444432 346789999999999999996642 1 1
Q ss_pred CChHHHHHHHHHHhCCChHHHHHH
Q 043250 349 ASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 349 ~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
+ ...++..++|.|+....+
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999744433
No 167
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.60 E-value=0.0016 Score=57.19 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=73.5
Q ss_pred cccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc--------------------cccceEEEEechhh
Q 043250 178 GVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR--------------------HFEGSYFALNVREA 237 (507)
Q Consensus 178 GR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--------------------~f~~~~~~~~~~~~ 237 (507)
|-+...+.|...+..+ .-...+.++|+.|+||+++|..+++.+-. .++...++.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 3445566677777532 23557899999999999999999985422 1333444431100
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCchhh-H
Q 043250 238 EETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDKQV-L 314 (507)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~~~-~ 314 (507)
...-.+.++. .+...+... -..++.=++|||+++. .+...+|+..+.....++.+|++|.+... .
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~-----------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLS-----------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred cchhhHHHHH-HHHHHHHHH-----------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 0011122111 222221111 0123566899999964 45566777766655678888888877643 3
Q ss_pred hh-cCCceeEecCCCC
Q 043250 315 KT-CWASQIYQMKELV 329 (507)
Q Consensus 315 ~~-~~~~~~~~l~~L~ 329 (507)
+. ......+.+.+|+
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 22 2345677777664
No 168
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.59 E-value=0.00041 Score=67.92 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=55.6
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVLI 277 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~Ll 277 (507)
..+.++|.+|+|||+||..+++.+......++|+. ..+++..+....... ........+.+.+ -=||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t----------~~~l~~~l~~~~~~~--~~~~~~~~~~l~~-~DLL 250 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT----------ADELIEILREIRFNN--DKELEEVYDLLIN-CDLL 250 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE----------HHHHHHHHHHHHhcc--chhHHHHHHHhcc-CCEE
Confidence 56999999999999999999998766555566665 222333332211111 1111112333332 2489
Q ss_pred EEcCCC----CHHHHHHHHcccCC-CCCCcEEEEEeCch
Q 043250 278 VFDDVS----HRRQIESLIGCLDE-LASGSRVIITTRDK 311 (507)
Q Consensus 278 VlDdv~----~~~~~~~l~~~l~~-~~~~~~iliTtR~~ 311 (507)
||||+. +......+...+.. ...+..+||||...
T Consensus 251 IIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 251 IIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999993 22223334333321 12344588888754
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.57 E-value=0.0007 Score=68.72 Aligned_cols=46 Identities=24% Similarity=0.144 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..++||++.++.+...+..+ ..|.|.|++|+|||+||+.++.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 56899999999998877633 24889999999999999999986543
No 170
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0014 Score=69.71 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=104.1
Q ss_pred cCCccccccchHHHHHH---hhhc-------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC
Q 043250 172 ENKGLVGVECPIEEIES---LLCI-------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG 241 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~---~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (507)
.-.++.|-++..++|.+ .|.. +..-++-+.|+|+||+|||-||++++-+- .+-|+.....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGS----- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGS----- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechH-----
Confidence 34567887766555544 5543 22347779999999999999999999763 2333331111
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCC-----------------HHHHHHHHcccCCCCCCcE
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSH-----------------RRQIESLIGCLDELASGSR 303 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~-----------------~~~~~~l~~~l~~~~~~~~ 303 (507)
++.....+.. ...+..+.... .+.++++.+|+++. ...+.+++.....+.....
T Consensus 379 -------EFvE~~~g~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 -------EFVEMFVGVG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred -------HHHHHhcccc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1111111111 22333333332 45789999998853 1236677766665444333
Q ss_pred E--EEEeCchhhHhh-----cCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHH
Q 043250 304 V--IITTRDKQVLKT-----CWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 304 i--liTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 369 (507)
| |-+|...+++.. -..+..+.++.-+...-.+.|..++-..... ....++.. ++..+-|++=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 3 445554444221 1245678888888899999998888443332 23345555 888888887543
No 171
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.56 E-value=0.00017 Score=72.51 Aligned_cols=55 Identities=24% Similarity=0.183 Sum_probs=41.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc--cccceEEEE
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFAL 232 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~ 232 (507)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .+....|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4577888888998888863 345889999999999999999987654 334444444
No 172
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00067 Score=69.93 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=85.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HcCC
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNR-LARK 273 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~-l~~~ 273 (507)
..++-|.++|+||+|||++|+.+++.-.-.|-.+ . . . +++....++. ...+.++.+. -+-.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k--g--------p----EL~sk~vGeS-Er~ir~iF~kAR~~a 527 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K--G--------P----ELFSKYVGES-ERAIREVFRKARQVA 527 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c--C--------H----HHHHHhcCch-HHHHHHHHHHHhhcC
Confidence 4578899999999999999999999765554321 0 0 0 1111111110 1112222222 2346
Q ss_pred cEEEEEcCCCCHH-------------HHHHHHcccCCCCCCcEEEE---EeCchhhHhhc----CCceeEecCCCChHHH
Q 043250 274 KVLIVFDDVSHRR-------------QIESLIGCLDELASGSRVII---TTRDKQVLKTC----WASQIYQMKELVYADA 333 (507)
Q Consensus 274 ~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~~~~ili---TtR~~~~~~~~----~~~~~~~l~~L~~~ea 333 (507)
+++++||.++... .+..++..+........|+| |.|...+-+.+ ..+..+.++.-+.+.-
T Consensus 528 P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 528 PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHH
Confidence 7999999986432 25566666554333334433 44544432222 2456788888888888
Q ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 334 HKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 334 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.++|..++-+-...+. -...+|++.+.|.-
T Consensus 608 ~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 608 LEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 8999888733222221 22566777776654
No 173
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0014 Score=67.00 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=77.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKV 275 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~ 275 (507)
+.-|.+||+||+|||-||++++++-..+| +. +. +. +++....++. ...+.++.++. ..-+|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VK------GP-----ELlNkYVGES-ErAVR~vFqRAR~saPC 606 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VK------GP-----ELLNKYVGES-ERAVRQVFQRARASAPC 606 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ec------CH-----HHHHHHhhhH-HHHHHHHHHHhhcCCCe
Confidence 55689999999999999999999866654 22 11 11 1222222211 11223333333 45799
Q ss_pred EEEEcCCCCH-------------HHHHHHHcccCCC--CCCcEEEEEeCchhh-Hhhc----CCceeEecCCCChHHHHH
Q 043250 276 LIVFDDVSHR-------------RQIESLIGCLDEL--ASGSRVIITTRDKQV-LKTC----WASQIYQMKELVYADAHK 335 (507)
Q Consensus 276 LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~~iliTtR~~~~-~~~~----~~~~~~~l~~L~~~ea~~ 335 (507)
+|+||.++.. ..+..|+..+... ..|..||-.|-.+++ -+.+ .....+-|+.-+.+|-.+
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 9999999532 2256666665532 345566665544433 2222 234567788888899999
Q ss_pred HHHHhhc
Q 043250 336 LFCQCAF 342 (507)
Q Consensus 336 L~~~~~~ 342 (507)
.+....-
T Consensus 687 ILK~~tk 693 (802)
T KOG0733|consen 687 ILKTITK 693 (802)
T ss_pred HHHHHhc
Confidence 9988774
No 174
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.54 E-value=0.0003 Score=64.01 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=61.9
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEE-echhhhccCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHcCCcE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL-NVREAEETGGIKDLQKKLLSELLNDGNRRNIE-SQLNRLARKKV 275 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~l~~~l~~~~~ 275 (507)
.++.|+|++|+||||++..+...+.......++.. +-.+.. .... ..+..+........... .+...++..+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~----~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESK----RSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCc----cceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 46899999999999999998887654444443332 110000 0000 00110000001122233 36677887888
Q ss_pred EEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhh
Q 043250 276 LIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQV 313 (507)
Q Consensus 276 LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~ 313 (507)
++++|++.+.+.+..++... ..|..++.|+-....
T Consensus 77 ~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 77 VILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 99999998887766655442 245567777766544
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.52 E-value=0.001 Score=60.12 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=61.2
Q ss_pred ccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh--cccccceEEEEechhhhc--cCCHHHH-------H
Q 043250 179 VECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI--SRHFEGSYFALNVREAEE--TGGIKDL-------Q 247 (507)
Q Consensus 179 R~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~--~~~~~~l-------~ 247 (507)
+..+-....+.|. ...++.+.|++|.|||.||.+.+-+. ...|+..++....-.... .+-.-++ .
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344444555554 34589999999999999999888643 456777777654432111 1111111 1
Q ss_pred HHHHHHHhcCCCCCCHHHHH----------HHHcC---CcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 248 KKLLSELLNDGNRRNIESQL----------NRLAR---KKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~----------~~l~~---~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
..+...+..--....++.+. .++++ ...++|+|++. +..++..++... +.+|+++++--..
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 11111111111122333322 23444 35799999994 556777776653 6899999987644
No 176
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.51 E-value=0.0021 Score=65.03 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=33.7
Q ss_pred cchHHHHHHhhh-----cCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 180 ECPIEEIESLLC-----IGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 180 ~~el~~l~~~L~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..-+.++..||. ...-+.+++.|+|++|+||||.++.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345677888887 344467899999999999999999998864
No 177
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0011 Score=60.15 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=42.8
Q ss_pred cccCCccccccchHHHHHHhhhc--CCCCceEEEEeccccchhhHHHHHHHhhhcccccc
Q 043250 170 QSENKGLVGVECPIEEIESLLCI--GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG 227 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 227 (507)
+..-..++|-+...+.|.+--.. ..-..--|.+||..|+|||+|++++.+.+...+..
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 34445789999998888763322 22233458899999999999999999988776554
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.42 E-value=0.0042 Score=65.76 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=41.3
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.....++|.+..++++.+.+..-......|.|+|.+|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999988776533344568899999999999999998754
No 179
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.42 E-value=0.0062 Score=59.99 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=38.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
+.++|++..++.+.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998877653334456889999999999999988753
No 180
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0037 Score=61.28 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=50.8
Q ss_pred CcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeCchh-hHhhc-CCceeEecCCCChHHHHHHHHHhhcCCCCCC
Q 043250 273 KKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTRDKQ-VLKTC-WASQIYQMKELVYADAHKLFCQCAFGGDHPD 348 (507)
Q Consensus 273 ~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 348 (507)
++-++|+|+++ +......++..+.....++.+|++|.+.. +.+.. .....+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC
Confidence 34455668885 34444555554443334566777777654 33221 246788999999999998886542 11
Q ss_pred CChHHHHHHHHHHhCCChHH
Q 043250 349 ASHTELTDRAIKYAQGVPLA 368 (507)
Q Consensus 349 ~~~~~~~~~i~~~~~G~PLa 368 (507)
. .. ..+..++|-|+.
T Consensus 188 ~-~~----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 E-PE----ERLAFHSGAPLF 202 (325)
T ss_pred c-HH----HHHHHhCCChhh
Confidence 1 11 123568898964
No 181
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.39 E-value=0.004 Score=61.30 Aligned_cols=45 Identities=22% Similarity=0.137 Sum_probs=35.6
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 176 LVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
++|....++++.+.+..-......|.|+|.+|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888888777653334456899999999999999998864
No 182
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.39 E-value=0.0016 Score=67.63 Aligned_cols=61 Identities=26% Similarity=0.222 Sum_probs=43.9
Q ss_pred ccccCCccccccchHHHHHHhhhc---CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 169 FQSENKGLVGVECPIEEIESLLCI---GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 169 ~~~~~~~~vGR~~el~~l~~~L~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
.|.....+.--.+-++++..||.. +....+++.|+||+|+||||.++.+++++. |...-|.
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 333444555556778888888875 223467999999999999999999998763 3444454
No 183
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.39 E-value=0.0011 Score=57.87 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=26.6
Q ss_pred EEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+.|+|++|+|||+++..++......-..++|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999987765445555654
No 184
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.39 E-value=0.001 Score=73.25 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=39.5
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 174 KGLVGVECPIEEIESLLCI----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
...+|.+.-.+.|.+++.. +....+.+.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578888888888776542 222345799999999999999999999875443
No 185
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.38 E-value=0.00097 Score=74.00 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=67.6
Q ss_pred CCccccccchHHHHHHhhhcC-------CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 173 NKGLVGVECPIEEIESLLCIG-------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
...++|-+..++.+...+... ......+.++|++|+|||+||+.+++.+...-...+-+ +..+......+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHH
Confidence 357899999999998877521 11234678999999999999999998764332222222 2322222222222
Q ss_pred HHHHHHHHHhcCCC---CCCHHHHHHHHcCCc-EEEEEcCCC--CHHHHHHHHcccC
Q 043250 246 LQKKLLSELLNDGN---RRNIESQLNRLARKK-VLIVFDDVS--HRRQIESLIGCLD 296 (507)
Q Consensus 246 l~~~l~~~~~~~~~---~~~~~~l~~~l~~~~-~LlVlDdv~--~~~~~~~l~~~l~ 296 (507)
+. +.+.. .+....+.+.++.++ .+++||+++ +.+....|+..+.
T Consensus 587 l~-------g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 LI-------GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred hc-------CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 11 11111 122234556666655 589999996 3445555555543
No 186
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.36 E-value=0.00045 Score=76.40 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=39.9
Q ss_pred CCccccccchHHHHHHhhhc-------CCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 173 NKGLVGVECPIEEIESLLCI-------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...++|.+..++.+.+.+.. ......++.++|++|+|||.||+.+++.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 35789999999998887743 1123457899999999999999999987644
No 187
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.0031 Score=69.08 Aligned_cols=159 Identities=12% Similarity=0.169 Sum_probs=85.3
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCI----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
...+|.+.-.+.|.++|.. .......++++|++|+||||+++.++..+...|-. +. .... .+...+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~-~~~~---~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA-LGGV---RDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE-cCCC---CCHHHhccc
Confidence 4689999999999887763 12245679999999999999999999876544321 11 1111 111111110
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCHH------HHHHHHcccCCC---------------CCCcEEEEEe
Q 043250 250 LLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHRR------QIESLIGCLDEL---------------ASGSRVIITT 308 (507)
Q Consensus 250 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~---------------~~~~~iliTt 308 (507)
- ....+.. ...+-+........+-+++||.++... ....++..+... -....+|.|+
T Consensus 395 ~-~~~~g~~-~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 395 R-RTYIGSM-PGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred h-hccCCCC-CcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 0 0000000 111111111222234478899995321 134444433210 1333445565
Q ss_pred CchhhHhh-cCCceeEecCCCChHHHHHHHHHhh
Q 043250 309 RDKQVLKT-CWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 309 R~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
....+.+. .....++++.+++.+|-.++...+.
T Consensus 473 N~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 473 NSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44332211 1244678999999999888876665
No 188
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.36 E-value=0.0083 Score=63.00 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=42.1
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+..++|+...++++.+.+..-......|.|+|.+|+|||++|+.+.+.-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 356799999999999988876444456789999999999999999988543
No 189
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00094 Score=69.62 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=88.7
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCI----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
.+-+|.+.-.++|.+.|.- ..-..++++++||||+|||+|++.+++-+...|-.. .++.......+.--.+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~----sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI----SLGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE----ecCccccHHHhcccccc
Confidence 3568999999999888853 223457999999999999999999999776655321 12222111111100011
Q ss_pred HHHHHhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH------HHHHHHHcccCC-CC------------CCcEE-EEEeC
Q 043250 250 LLSELLNDGNRRNIESQLNRLARKKVLIVFDDVSHR------RQIESLIGCLDE-LA------------SGSRV-IITTR 309 (507)
Q Consensus 250 l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~~-~~------------~~~~i-liTtR 309 (507)
....+ +..+-+-....+.++-|++||.++.. +...+++..+.. .+ --|.| .|||-
T Consensus 399 YIGam-----PGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 399 YIGAM-----PGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred ccccC-----ChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 10000 11111112233456778999999632 122333333321 00 11333 34444
Q ss_pred ch-h-h-HhhcCCceeEecCCCChHHHHHHHHHhh
Q 043250 310 DK-Q-V-LKTCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 310 ~~-~-~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+. . + .+.+....++++.+.+.+|-.+.-.++.
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33 2 1 3334456889999999999888877765
No 190
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.34 E-value=0.0022 Score=67.34 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=37.9
Q ss_pred cCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 172 ENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..+.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3357999999999998876532 3346789999999999999999864
No 191
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.34 E-value=0.00028 Score=60.17 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=33.3
Q ss_pred ccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 177 VGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 177 vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
||+...++++.+.+..-......|.|+|.+|+||+++|+.+++.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577888888888776533344568999999999999999888753
No 192
>PRK04296 thymidine kinase; Provisional
Probab=97.33 E-value=0.00028 Score=63.71 Aligned_cols=106 Identities=16% Similarity=0.071 Sum_probs=59.5
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC---CCCHHHHHHHH---c
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN---RRNIESQLNRL---A 271 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~l~~~l---~ 271 (507)
.++.|+|++|.||||++..++.+...+...++++.. .......... +...++.... ......+.+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~~----i~~~lg~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEGK----VVSRIGLSREAIPVSSDTDIFELIEEEG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCCc----EecCCCCcccceEeCChHHHHHHHHhhC
Confidence 468899999999999999999887655444444421 0111111111 1122211000 12233333332 2
Q ss_pred CCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 272 RKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 272 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
++.-+||+|.+.- .+++..+...+. ..|..|++|.++.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 3556899999943 344555554433 4678899999884
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0017 Score=69.50 Aligned_cols=115 Identities=19% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCccccccchHHHHHHhhhc-------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 173 NKGLVGVECPIEEIESLLCI-------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
...++|-+..+..+.+.+.. .+.+..+....||.|+|||-||+.++..+.+.=...+-+ +.++..+.+++
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsV-- 566 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSV-- 566 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHH--
Confidence 35789999999999887754 122356778899999999999999999775432222222 23333222222
Q ss_pred HHHHHHHHHhcCCC----CCCHHHHHHHHcCCcE-EEEEcCCC--CHHHHHHHHcccC
Q 043250 246 LQKKLLSELLNDGN----RRNIESQLNRLARKKV-LIVFDDVS--HRRQIESLIGCLD 296 (507)
Q Consensus 246 l~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~-LlVlDdv~--~~~~~~~l~~~l~ 296 (507)
..+.+.++ -+.=..+-+..+++|+ ++.||+++ +++.++-|+..+.
T Consensus 567 ------SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 567 ------SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ------HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 22223322 2333447788888887 88899995 5666777776654
No 194
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0014 Score=64.16 Aligned_cols=93 Identities=24% Similarity=0.303 Sum_probs=61.0
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhc-CCC-
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLN-DGN- 259 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~- 259 (507)
-+.++.+.|..+--...++.|-|.||||||||..+++.++..+. .+.|+.. ..+..++..+ +..+.. ..+
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~QiklR-A~RL~~~~~~l 149 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIKLR-ADRLGLPTNNL 149 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHHHH-HHHhCCCccce
Confidence 34566666653323467899999999999999999999988776 6666651 2233333222 222221 122
Q ss_pred ----CCCHHHHHHHHc-CCcEEEEEcCC
Q 043250 260 ----RRNIESQLNRLA-RKKVLIVFDDV 282 (507)
Q Consensus 260 ----~~~~~~l~~~l~-~~~~LlVlDdv 282 (507)
..+++.+.+.+. .++-|+|+|.+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 456677766665 47889999988
No 195
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.31 E-value=0.0032 Score=59.94 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=100.6
Q ss_pred cCCccccccchHHHHHHhhhcC--CCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc--cCCHHHHH
Q 043250 172 ENKGLVGVECPIEEIESLLCIG--SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE--TGGIKDLQ 247 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~ 247 (507)
+...++|-.++-..+..++... -++...|.|.|+.|.|||+|......+ .+.+.....++.+.+.-. .-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457899999999999888652 234556889999999999998877766 444555555554433221 12233344
Q ss_pred HHHHHHHhcCCC-----CCCHHHHHHHHcC------CcEEEEEcCCCCHH------HHHHHHcccC-CCCCCcEEEEEeC
Q 043250 248 KKLLSELLNDGN-----RRNIESQLNRLAR------KKVLIVFDDVSHRR------QIESLIGCLD-ELASGSRVIITTR 309 (507)
Q Consensus 248 ~~l~~~~~~~~~-----~~~~~~l~~~l~~------~~~LlVlDdv~~~~------~~~~l~~~l~-~~~~~~~iliTtR 309 (507)
.++..++..... .+++..+...|.. .+++.|+|.++-.. .+-.+..... ...|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444433332211 4556667666644 36889998885321 1222222211 1245566778998
Q ss_pred chhh-------HhhcCCceeEecCCCChHHHHHHHHHhh
Q 043250 310 DKQV-------LKTCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 310 ~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
-... -..+.-..++-++.++.++-.++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6522 1222222356677788888888887765
No 196
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.27 E-value=0.00029 Score=68.85 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=41.8
Q ss_pred CccccccchHHHHHHhhhcC----CCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 174 KGLVGVECPIEEIESLLCIG----SEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..++|.++.++++.+++... ....++++|+|++|+||||||..+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 37999999999999988652 234688999999999999999999986543
No 197
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.26 E-value=0.013 Score=64.10 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++|+...++.+.+.+..-......|.|+|.+|+|||++|+.+.+.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999999877665433334568899999999999999998754
No 198
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.24 E-value=0.00022 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 199
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.24 E-value=0.00093 Score=62.20 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=36.8
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|.++|..+-....++.|+|++|+|||+||.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455555433345679999999999999999999987765556777776
No 200
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.22 E-value=0.0016 Score=59.79 Aligned_cols=44 Identities=27% Similarity=0.208 Sum_probs=34.4
Q ss_pred hhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 189 LLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 189 ~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+|..+-....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333345789999999999999999999987765556778886
No 201
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.22 E-value=0.0018 Score=64.58 Aligned_cols=93 Identities=23% Similarity=0.265 Sum_probs=56.4
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcC-CC--
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLND-GN-- 259 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~-- 259 (507)
+.+|.+.|..+-....++.|.|.+|+|||||+.+++.........++|+..- ....++... ...+... ..
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E------Es~~qi~~R-a~rlg~~~~~l~ 140 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE------ESPEQIKLR-ADRLGISTENLY 140 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC------cCHHHHHHH-HHHcCCCcccEE
Confidence 3455556643333467899999999999999999998776554556666521 122232221 2222211 11
Q ss_pred ---CCCHHHHHHHHc-CCcEEEEEcCC
Q 043250 260 ---RRNIESQLNRLA-RKKVLIVFDDV 282 (507)
Q Consensus 260 ---~~~~~~l~~~l~-~~~~LlVlDdv 282 (507)
...++.+.+.+. .++-++|+|.+
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcch
Confidence 234566666554 36779999998
No 202
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.21 E-value=0.0026 Score=55.02 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=60.9
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHH-----hc------CCCCC-----
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL-----LN------DGNRR----- 261 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~------~~~~~----- 261 (507)
..|-|++..|.||||+|...+-+...+-..+.++.-+... ...+-...+..+- .+ +. .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHH
Confidence 3677888889999999999998776665555554433221 1122233333320 00 00 00000
Q ss_pred --CHHHHHHHHcC-CcEEEEEcCCCCH-----HHHHHHHcccCCCCCCcEEEEEeCchh
Q 043250 262 --NIESQLNRLAR-KKVLIVFDDVSHR-----RQIESLIGCLDELASGSRVIITTRDKQ 312 (507)
Q Consensus 262 --~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iliTtR~~~ 312 (507)
.++..++.+.. .-=|||||++... -..+.+...+.....+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11113344444 4459999999322 123333333333356778999999864
No 203
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0019 Score=67.27 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=85.6
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCI----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
+.-+|+++-.++|.+++.- ++-..++++.+|+||+|||.+|+.++.-+...| |-..++.......+.--.+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF----fRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF----FRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce----EEEeccccccHHhhccccee
Confidence 3568999988999887753 344578999999999999999999999765544 22223332221111111111
Q ss_pred HHHHHhcCCCCCCHHHHHHHH---cCCcEEEEEcCCCCH------HHHHHHHcccCC-C------------CCCcEEEE-
Q 043250 250 LLSELLNDGNRRNIESQLNRL---ARKKVLIVFDDVSHR------RQIESLIGCLDE-L------------ASGSRVII- 306 (507)
Q Consensus 250 l~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~------~~~~~l~~~l~~-~------------~~~~~ili- 306 (507)
.... .-..+.+.| +..+-|+.||.|+.. +...+|+..+.. . ---|+|++
T Consensus 487 YVGA--------MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 487 YVGA--------MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred eecc--------CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 1100 111133333 345568888988532 112222222210 0 11245543
Q ss_pred EeCch-hh--HhhcCCceeEecCCCChHHHHHHHHHhh
Q 043250 307 TTRDK-QV--LKTCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 307 TtR~~-~~--~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
.|-+. .. .+......++++.+...+|-...-.++.
T Consensus 559 cTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 23221 11 1122345789999999999887776665
No 204
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0036 Score=63.09 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=78.6
Q ss_pred Cccccccc---hHHHHHHhhhcCC-------CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCH
Q 043250 174 KGLVGVEC---PIEEIESLLCIGS-------EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGI 243 (507)
Q Consensus 174 ~~~vGR~~---el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (507)
++.-|-|+ |++++.+.|.... .=++-|.++|+||.|||-||++++-+..- -+|...-.+ +
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V----PFF~~sGSE------F 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV----PFFYASGSE------F 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC----CeEeccccc------h
Confidence 34556654 5566666776421 12667999999999999999999875322 223321111 1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHH-HHcCCcEEEEEcCCCCH-------------HHHHHHHcccCCCCC--CcEEEEE
Q 043250 244 KDLQKKLLSELLNDGNRRNIESQLN-RLARKKVLIVFDDVSHR-------------RQIESLIGCLDELAS--GSRVIIT 307 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~--~~~iliT 307 (507)
.++ +... ....+..+.+ .-.+-+|+|++|.++.. +.+.+++..+..+.+ |.-||-.
T Consensus 374 dEm----~VGv----GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 374 DEM----FVGV----GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred hhh----hhcc----cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 111 1110 0112222222 23457999999999532 236666666654443 3333333
Q ss_pred eCchhhH-hhc----CCceeEecCCCChHHHHHHHHHhh
Q 043250 308 TRDKQVL-KTC----WASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 308 tR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
|--++.+ +.+ ..+..+.|+.-+..--.++|..+.
T Consensus 446 TNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 446 TNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred cCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 4333322 222 123455666555555555555544
No 205
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.17 E-value=0.0021 Score=63.27 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=59.7
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccce-EEEEechhhhccCCHHHHHHHHHHHHhcCCC-C-
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGS-YFALNVREAEETGGIKDLQKKLLSELLNDGN-R- 260 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~- 260 (507)
..+.+.+.+- +..+.++|+|.+|+|||||++.+++.+....+.+ +++..+. .....+.++.+.+...+..... .
T Consensus 121 ~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred Hhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3466666532 2334568999999999999999999876654332 3333232 2345677777777665544321 1
Q ss_pred --CCHH------HHHHHH--cCCcEEEEEcCCCC
Q 043250 261 --RNIE------SQLNRL--ARKKVLIVFDDVSH 284 (507)
Q Consensus 261 --~~~~------~l~~~l--~~~~~LlVlDdv~~ 284 (507)
.... ...+++ .+++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111 122222 57899999999953
No 206
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.17 E-value=0.0069 Score=58.67 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=34.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
+.++=.......+...+.. .+.|.|.|++|+|||++|+.++..+...|
T Consensus 45 ~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3444444455666666642 24589999999999999999999875443
No 207
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.15 E-value=0.0084 Score=52.93 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=42.2
Q ss_pred EEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC-------CCCHHHHHHHHc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN-------RRNIESQLNRLA 271 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~l~~~l~ 271 (507)
.+.|.|.+|+|||++|..++.+... ..+++... ...-.++.+++.......+. ..++..+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat~-----~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIATA-----QPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcCC-----CCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 5899999999999999999876422 23343311 12233444555443322222 123333333322
Q ss_pred CCcEEEEEcCC
Q 043250 272 RKKVLIVFDDV 282 (507)
Q Consensus 272 ~~~~LlVlDdv 282 (507)
.+.-++++|.+
T Consensus 75 ~~~~~VlID~L 85 (170)
T PRK05800 75 APGRCVLVDCL 85 (170)
T ss_pred CCCCEEEehhH
Confidence 33447889987
No 208
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00042 Score=58.85 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.0
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccc-ccce
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRH-FEGS 228 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~ 228 (507)
--|+|+|+||+|||||+..+++.++.. |..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 458999999999999999999987665 5543
No 209
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.15 E-value=0.0016 Score=61.49 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=56.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCHHH--
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLND--------GNRRNIES-- 265 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~-- 265 (507)
..+.++|.|.+|+|||+|+..+++....+|...+++..+++- ...+.++.+.+...-... .+......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999999888777777777655432 234555555554321111 11111111
Q ss_pred -------HHHHH--c-CCcEEEEEcCCCCH
Q 043250 266 -------QLNRL--A-RKKVLIVFDDVSHR 285 (507)
Q Consensus 266 -------l~~~l--~-~~~~LlVlDdv~~~ 285 (507)
+.+++ + ++.+|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 34444 3 78999999999543
No 210
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.14 E-value=0.0061 Score=65.65 Aligned_cols=146 Identities=12% Similarity=0.073 Sum_probs=78.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHcCCcEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIES-QLNRLARKKVL 276 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-l~~~l~~~~~L 276 (507)
+-+.|+|++|+|||++|+.++.+....| +.+. .... ... ... .....+.. +.......+++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~~---------~~~----~~g-~~~~~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDF---------VEM----FVG-VGASRVRDMFEQAKKAAPCI 247 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHHh---------HHh----hhc-ccHHHHHHHHHHHHhcCCcE
Confidence 4589999999999999999998764432 1111 1110 000 000 00111111 12223457899
Q ss_pred EEEcCCCCHH----------------HHHHHHcccCCC--CCCcEEEEEeCchhhHhh-c----CCceeEecCCCChHHH
Q 043250 277 IVFDDVSHRR----------------QIESLIGCLDEL--ASGSRVIITTRDKQVLKT-C----WASQIYQMKELVYADA 333 (507)
Q Consensus 277 lVlDdv~~~~----------------~~~~l~~~l~~~--~~~~~iliTtR~~~~~~~-~----~~~~~~~l~~L~~~ea 333 (507)
|+||+++... .+..++..+..+ ..+.-+|.||..+..+.. . .....+.++..+.++-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 9999996431 233444333322 234445557766543221 1 2356788998888888
Q ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHhCC
Q 043250 334 HKLFCQCAFGGDHPDASHTELTDRAIKYAQG 364 (507)
Q Consensus 334 ~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 364 (507)
.+++..+.......... ....+++.+.|
T Consensus 328 ~~Il~~~~~~~~l~~~~---d~~~la~~t~G 355 (644)
T PRK10733 328 EQILKVHMRRVPLAPDI---DAAIIARGTPG 355 (644)
T ss_pred HHHHHHHhhcCCCCCcC---CHHHHHhhCCC
Confidence 88887776332211111 13446666665
No 211
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.14 E-value=0.002 Score=59.59 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=36.7
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..|..+|..+-....++.|+|.+|+|||+|+.+++......-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455666433345788999999999999999999987755555666765
No 212
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.13 E-value=0.015 Score=51.15 Aligned_cols=75 Identities=8% Similarity=0.053 Sum_probs=41.6
Q ss_pred EEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHcC--C
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN----RRNIESQLNRLAR--K 273 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~~~l~~~l~~--~ 273 (507)
+.|.|.+|+|||++|.+++.. .....+++.... ..+ .++.+.+.......+. .+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~----~~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAE----AFD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC----cCC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 679999999999999999875 223556664222 122 2333333332211111 2333335555422 2
Q ss_pred cEEEEEcCC
Q 043250 274 KVLIVFDDV 282 (507)
Q Consensus 274 ~~LlVlDdv 282 (507)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347889987
No 213
>PRK06696 uridine kinase; Validated
Probab=97.12 E-value=0.00071 Score=62.84 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=35.5
Q ss_pred ccchHHHHHHhhhc-CCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 179 VECPIEEIESLLCI-GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 179 R~~el~~l~~~L~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
|.+.+++|.+.+.. ..+...+|+|.|.+|+||||||..++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45566667666643 34567899999999999999999999887543
No 214
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0018 Score=70.33 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=39.2
Q ss_pred CccccccchHHHHHHhhhcC-------CCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 174 KGLVGVECPIEEIESLLCIG-------SEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..++|-+..++.|...+... ......+.++|++|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999988877631 12245789999999999999999998763
No 215
>PRK07667 uridine kinase; Provisional
Probab=97.12 E-value=0.001 Score=60.32 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=32.8
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
++.+.+.+..-.+...+|+|.|.+|+||||+|..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455666665545556899999999999999999999877543
No 216
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.10 E-value=0.0031 Score=58.68 Aligned_cols=48 Identities=19% Similarity=0.061 Sum_probs=34.7
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc------cceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 232 (507)
.|.++|..+-....++.|+|++|+|||+|+.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44555543334567899999999999999999987654444 4567766
No 217
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.10 E-value=0.0051 Score=57.72 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=36.3
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..|.++|..+-....++.|.|++|+|||+||.++.......-..++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4455566544455788999999999999999998876544456677775
No 218
>PHA00729 NTP-binding motif containing protein
Probab=97.09 E-value=0.0021 Score=58.82 Aligned_cols=27 Identities=37% Similarity=0.397 Sum_probs=23.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+...+.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998753
No 219
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.01 Score=55.52 Aligned_cols=172 Identities=19% Similarity=0.232 Sum_probs=91.7
Q ss_pred CccccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCH
Q 043250 174 KGLVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGI 243 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (507)
+..-|-+...+.|.+...- ....-+-|.++|+||.|||-||++++-+.. ..|++ ++ .
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFS----vS----S 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFS----VS----S 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEE----ee----h
Confidence 4567777777777664321 123467899999999999999999997642 23333 11 1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcEEEEEcCCCCH---------HHHHH----HHcccC---CCCCCcEEEE
Q 043250 244 KDLQKKLLSELLNDGNRRNIESQLNRL-ARKKVLIVFDDVSHR---------RQIES----LIGCLD---ELASGSRVII 306 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~---------~~~~~----l~~~l~---~~~~~~~ili 306 (507)
.++....+..- ...+..+.+.. .+++-+|++|.++.. +..+. ++-... ....|.-||-
T Consensus 200 SDLvSKWmGES-----EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 200 SDLVSKWMGES-----EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred HHHHHHHhccH-----HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 12222221110 01112233332 468999999999532 22222 221211 1234555666
Q ss_pred EeCchhhHhhc---CCceeEecCCCChHHHH-HHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 307 TTRDKQVLKTC---WASQIYQMKELVYADAH-KLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 307 TtR~~~~~~~~---~~~~~~~l~~L~~~ea~-~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
.|..+.++... .....+-+ ||++..|. .+|.-+. +..+........+.+.+++.|.-
T Consensus 275 ATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl--G~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL--GDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred cCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc--CCCccccchhhHHHHHhhcCCCC
Confidence 67666554432 11222323 45555554 4555555 44444444566777888888753
No 220
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.06 E-value=0.0029 Score=59.27 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..|...|..+-....++.|+|.+|+|||+|+.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455555444445778999999999999999999876544445666665
No 221
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.0013 Score=60.87 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=29.2
Q ss_pred EEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.++|.|.+|+|||+|+..+...+...|..++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5789999999999999999998888896665554
No 222
>PRK08118 topology modulation protein; Reviewed
Probab=97.05 E-value=0.00048 Score=60.74 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=25.3
Q ss_pred EEEEeccccchhhHHHHHHHhhhcc---cccceEE
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISR---HFEGSYF 230 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~---~f~~~~~ 230 (507)
.|.|+|++|+||||||+.+++.+.- +++..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999987532 3455554
No 223
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0057 Score=55.79 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=37.0
Q ss_pred ccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 175 GLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
.+=|.+-+.+++.+...- +-+.++-|.++|++|.|||.||+++++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 344667666766664421 234678899999999999999999998655443
No 224
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.02 E-value=0.0012 Score=65.47 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=61.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEE-echhhhccCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHcCCc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL-NVREAEETGGIKDLQKKLLSELLNDGNRRNIE-SQLNRLARKK 274 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~l~~~l~~~~ 274 (507)
...+.|+|+.|+||||+...+...+.......++.. +-.+... ... ..+..+........... .+...|+..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~----~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNK----RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCc----cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 357999999999999999999887665444444443 1101000 000 00000000001112333 3677788999
Q ss_pred EEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchh
Q 043250 275 VLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQ 312 (507)
Q Consensus 275 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~ 312 (507)
=+|++|++.+.+.....+... ..|..++.|.-...
T Consensus 197 d~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 197 DVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred CEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 999999999887766544432 34555666655443
No 225
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0064 Score=63.76 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=82.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHH-HHHcCCc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQL-NRLARKK 274 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~-~~l~~~~ 274 (507)
..+.+.++|++|.|||.||++++......|-....- ++....+... ...+..+. ...+..+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~sk~vGes-----ek~ir~~F~~A~~~~p 336 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLSKWVGES-----EKNIRELFEKARKLAP 336 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhccccchH-----HHHHHHHHHHHHcCCC
Confidence 456899999999999999999999654443222111 1111110000 11122222 2235789
Q ss_pred EEEEEcCCCCH-------------HHHHHHHcccCCCC--CCcEEEEEeCchhhHhhc-----CCceeEecCCCChHHHH
Q 043250 275 VLIVFDDVSHR-------------RQIESLIGCLDELA--SGSRVIITTRDKQVLKTC-----WASQIYQMKELVYADAH 334 (507)
Q Consensus 275 ~LlVlDdv~~~-------------~~~~~l~~~l~~~~--~~~~iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~ 334 (507)
++|++|+++.. .....++..+.... .+..||-||-.+...... .....+.+++-+.++..
T Consensus 337 ~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~ 416 (494)
T COG0464 337 SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERL 416 (494)
T ss_pred cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHH
Confidence 99999999532 23444554443222 333445555444332211 23567889999999999
Q ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHhCC
Q 043250 335 KLFCQCAFGGDHPDASHTELTDRAIKYAQG 364 (507)
Q Consensus 335 ~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 364 (507)
+.|..+......+ -...-....+++.+.|
T Consensus 417 ~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 417 EIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 9998888422222 1112334555555555
No 226
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.00 E-value=0.0042 Score=60.31 Aligned_cols=49 Identities=20% Similarity=0.114 Sum_probs=36.3
Q ss_pred HHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 184 EEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..|..+|. .+-+..+++.|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34555554 33345789999999999999999999887665555667775
No 227
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.98 E-value=0.001 Score=57.36 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=29.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..+|.|+|.+|+||||||.++.+++......++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358999999999999999999999887766666664
No 228
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.98 E-value=0.0041 Score=58.25 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc------ccceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 232 (507)
.|..+|..+-....++.|+|++|+|||+|+.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444554333456789999999999999999998643222 25677776
No 229
>PRK04328 hypothetical protein; Provisional
Probab=96.95 E-value=0.0068 Score=57.25 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=35.2
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|.++|..+-....++.|.|.+|+|||+|+.+++......-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455555433345678999999999999999998876544456667765
No 230
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.011 Score=58.61 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=27.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
..++|+|+|++|+||||++..++..+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 357899999999999999999998765443333333
No 231
>PRK06762 hypothetical protein; Provisional
Probab=96.94 E-value=0.0025 Score=56.15 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.+|+|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 232
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.94 E-value=0.0034 Score=56.83 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
++++.++|+.|+||||.+.+++.++..+-..+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 36899999999999999999998776553333343
No 233
>PTZ00494 tuzin-like protein; Provisional
Probab=96.93 E-value=0.11 Score=51.86 Aligned_cols=176 Identities=10% Similarity=0.009 Sum_probs=95.6
Q ss_pred HHHHHhhhhcccccc------cccCCccccccchHHHHHHhhhcC-CCCceEEEEeccccchhhHHHHHHHhhhcccccc
Q 043250 155 EEIANDVLKRLDSTF------QSENKGLVGVECPIEEIESLLCIG-SEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG 227 (507)
Q Consensus 155 ~~i~~~~~~~l~~~~------~~~~~~~vGR~~el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 227 (507)
.-.++.+.+.+++.. +..+..+|.|+.|-..+.+.|... ...++++.++|.-|.|||+|.+....+- --.
T Consensus 346 ~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~p 422 (664)
T PTZ00494 346 RTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVA 422 (664)
T ss_pred HHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCC
Confidence 334455555444332 345678999999998888888763 3468999999999999999999877642 234
Q ss_pred eEEEEechhhhccCCHHHHHHHHHHHHhcCCC---CCCHHH-------HHHHHcCCcEEEEEc--CCCCHHH-HHHHHcc
Q 043250 228 SYFALNVREAEETGGIKDLQKKLLSELLNDGN---RRNIES-------QLNRLARKKVLIVFD--DVSHRRQ-IESLIGC 294 (507)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~-------l~~~l~~~~~LlVlD--dv~~~~~-~~~l~~~ 294 (507)
.+|+. ++ +..+.++.+...++-+.- .+.++- ......++.-+||+- +-.+..- ..+.. .
T Consensus 423 aV~VD-VR------g~EDtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-a 494 (664)
T PTZ00494 423 LVHVD-VG------GTEDTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-S 494 (664)
T ss_pred eEEEE-ec------CCcchHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-H
Confidence 56665 22 223333444444432211 122221 122234444455542 2222221 11111 1
Q ss_pred cCCCCCCcEEEEEeCchhhHh---hcCCceeEecCCCChHHHHHHHHHhh
Q 043250 295 LDELASGSRVIITTRDKQVLK---TCWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 295 l~~~~~~~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
+..-..-|+|++----+.+-. .+..-..|-+++++.++|.++.....
T Consensus 495 LacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 495 LVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HHccchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111134566666443332211 11123568899999999999875544
No 234
>PRK09354 recA recombinase A; Provisional
Probab=96.93 E-value=0.0044 Score=60.74 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=37.3
Q ss_pred HHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 184 EEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..|..+|. .+-+..+++-|+|++|+||||||.+++......-..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555665 33345788999999999999999999887666666777776
No 235
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0024 Score=56.58 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
+.|.++|.||+||||+|+++++.++++-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 5688999999999999999998766543
No 236
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.92 E-value=0.0048 Score=63.36 Aligned_cols=94 Identities=21% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCC----
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDG---- 258 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---- 258 (507)
+..|.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.. .....++... ...+....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~------Ees~~qi~~r-a~rlg~~~~~l~ 138 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG------EESASQIKLR-AERLGLPSDNLY 138 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc------cccHHHHHHH-HHHcCCChhcEE
Confidence 455666665333346789999999999999999999877644445666652 1223333222 22222111
Q ss_pred --CCCCHHHHHHHHcC-CcEEEEEcCCC
Q 043250 259 --NRRNIESQLNRLAR-KKVLIVFDDVS 283 (507)
Q Consensus 259 --~~~~~~~l~~~l~~-~~~LlVlDdv~ 283 (507)
....++.+.+.+.. ++-++|+|.+.
T Consensus 139 ~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 139 LLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 12455666665543 66799999983
No 237
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.92 E-value=0.0045 Score=63.57 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=57.3
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCC---
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDG--- 258 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--- 258 (507)
-+..|.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+..- ....++.... ..+.-..
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E------Es~~qi~~ra-~rlg~~~~~l 151 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE------ESLQQIKMRA-IRLGLPEPNL 151 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc------CCHHHHHHHH-HHcCCChHHe
Confidence 35566666654444567899999999999999999988765544456666521 2223332221 1111110
Q ss_pred ---CCCCHHHHHHHHcC-CcEEEEEcCC
Q 043250 259 ---NRRNIESQLNRLAR-KKVLIVFDDV 282 (507)
Q Consensus 259 ---~~~~~~~l~~~l~~-~~~LlVlDdv 282 (507)
....++.+.+.+.. +.-++|+|.+
T Consensus 152 ~~~~e~~~~~I~~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 152 YVLSETNWEQICANIEEENPQACVIDSI 179 (454)
T ss_pred EEcCCCCHHHHHHHHHhcCCcEEEEecc
Confidence 02345666666544 6678999988
No 238
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.91 E-value=0.0034 Score=56.95 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=58.2
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCC
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRN 262 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 262 (507)
.+.+...+. ++.+++.|.|++|+|||+++..+...+...-..+++.. . .......+...... ....
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-p--------T~~Aa~~L~~~~~~--~a~T 72 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-P--------TNKAAKELREKTGI--EAQT 72 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-S--------SHHHHHHHHHHHTS---EEE
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-C--------cHHHHHHHHHhhCc--chhh
Confidence 444555554 23467889999999999999998876655433333332 1 11122222222211 1111
Q ss_pred HHHHHHHH----------cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 263 IESQLNRL----------ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 263 ~~~l~~~l----------~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
+..+.... ..+.-+||+|++.. ...+..++.... ..++++|+.--..
T Consensus 73 i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 73 IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 11111110 12335999999954 456777766655 3577887766544
No 239
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.18 Score=48.76 Aligned_cols=166 Identities=10% Similarity=0.076 Sum_probs=92.6
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc---------ccc-ceEEEEechhhhccCCHHHHHHHHHHH
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR---------HFE-GSYFALNVREAEETGGIKDLQKKLLSE 253 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------~f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~ 253 (507)
+.+.+.+.. ..-..+..++|..|+||+++|..+++.+-. ..+ ...++. .. .....+.++. ++...
T Consensus 6 ~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~--g~~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF--DKDLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC--CCcCCHHHHH-HHHHH
Confidence 344455542 223567889999999999999999987611 111 122221 00 0111111111 11111
Q ss_pred HhcCCCCCCHHHHHHHHcCCcEEEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEEeCc-hhhHhh-cCCceeEecCCCC
Q 043250 254 LLNDGNRRNIESQLNRLARKKVLIVFDDVSHR--RQIESLIGCLDELASGSRVIITTRD-KQVLKT-CWASQIYQMKELV 329 (507)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~~~~l~~L~ 329 (507)
+.-. ..-.+.+-++|+|+++.. .....++..+...++.+.+|++|.+ ..+.+. ...+..+++.+++
T Consensus 81 ~~~~----------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~ 150 (299)
T PRK07132 81 LYFS----------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150 (299)
T ss_pred hccC----------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence 1100 000246678889988644 3456676666655567766665544 444433 3457889999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHH
Q 043250 330 YADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVL 372 (507)
Q Consensus 330 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 372 (507)
.++..+.+.... ...+.+..++..++|.=-|++.+
T Consensus 151 ~~~l~~~l~~~~--------~~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 151 QQKILAKLLSKN--------KEKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHHHHHHcC--------CChhHHHHHHHHcCCHHHHHHHH
Confidence 999998886531 11244666666777633455553
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.89 E-value=0.025 Score=57.62 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
.+.+|.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999877654
No 241
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.87 E-value=0.0032 Score=59.96 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=58.5
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHh-cCCCC
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELL-NDGNR 260 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ 260 (507)
.++.+..++. ....++.|+|+.|+||||++..+...+...-...+.+.+..+... ... .+.. .....
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q~~v~~~~~ 135 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQVQVNEKAG 135 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eEEEeCCcCC
Confidence 3444555553 223579999999999999999988766432222333332211110 010 0000 01111
Q ss_pred CCH-HHHHHHHcCCcEEEEEcCCCCHHHHHHHHcc
Q 043250 261 RNI-ESQLNRLARKKVLIVFDDVSHRRQIESLIGC 294 (507)
Q Consensus 261 ~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 294 (507)
... +.+...|+..+=.++++++.+.+....++..
T Consensus 136 ~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 136 LTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 223 3377788889999999999998876655544
No 242
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.026 Score=51.57 Aligned_cols=145 Identities=19% Similarity=0.275 Sum_probs=78.2
Q ss_pred ccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 179 VECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 179 R~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
-+.++++|.+.+.- +-..++-+.++|++|.|||-||+.+++. ..+.|+. ++. .++.
T Consensus 152 Ld~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~fir-vsg-------selv 218 (404)
T KOG0728|consen 152 LDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-VSG-------SELV 218 (404)
T ss_pred HHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-ech-------HHHH
Confidence 46666666665432 1134667899999999999999999974 3344443 221 1222
Q ss_pred HHHHHHHhcCCCCCCHHHHHH-HHcCCcEEEEEcCCCCH-------------HH---HHHHHcccCCC--CCCcEEEEEe
Q 043250 248 KKLLSELLNDGNRRNIESQLN-RLARKKVLIVFDDVSHR-------------RQ---IESLIGCLDEL--ASGSRVIITT 308 (507)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~---~~~l~~~l~~~--~~~~~iliTt 308 (507)
+..... . ...+.++.- .-.+-+-++++|.+++. +. .-.++..+..+ ..+.+||+.|
T Consensus 219 qk~ige----g-srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimat 293 (404)
T KOG0728|consen 219 QKYIGE----G-SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT 293 (404)
T ss_pred HHHhhh----h-HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEec
Confidence 222111 0 011111111 12456889999988642 11 22333444322 3566777766
Q ss_pred CchhhHhh-----cCCceeEecCCCChHHHHHHHHHhh
Q 043250 309 RDKQVLKT-----CWASQIYQMKELVYADAHKLFCQCA 341 (507)
Q Consensus 309 R~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 341 (507)
..-+++.. -..+..++.++-+.+.-.+.+.-+.
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 54433221 1234567777777777677776554
No 243
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.0021 Score=67.09 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=44.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--cC
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL--AR 272 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l--~~ 272 (507)
+..+++.++|++|.||||||.-++++.. | .+.-.+ .+.......+-..+...+.. ...+ .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Y--sVvEIN---ASDeRt~~~v~~kI~~avq~----------~s~l~ads 386 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--Y--SVVEIN---ASDERTAPMVKEKIENAVQN----------HSVLDADS 386 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--c--eEEEec---ccccccHHHHHHHHHHHHhh----------ccccccCC
Confidence 4578999999999999999999998631 1 222222 22223333333333332221 1223 26
Q ss_pred CcEEEEEcCCCC
Q 043250 273 KKVLIVFDDVSH 284 (507)
Q Consensus 273 ~~~LlVlDdv~~ 284 (507)
++.-||+|.++.
T Consensus 387 rP~CLViDEIDG 398 (877)
T KOG1969|consen 387 RPVCLVIDEIDG 398 (877)
T ss_pred CcceEEEecccC
Confidence 888999999964
No 244
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.021 Score=59.69 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=81.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cCCcE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRL-ARKKV 275 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~ 275 (507)
..-|.++|+||.|||-||.+++....- -|+. + .+. +++....+. ..+++..+..+. .-++|
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~-----~fis-v------KGP-----ElL~KyIGa-SEq~vR~lF~rA~~a~PC 762 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNL-----RFIS-V------KGP-----ELLSKYIGA-SEQNVRDLFERAQSAKPC 762 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCe-----eEEE-e------cCH-----HHHHHHhcc-cHHHHHHHHHHhhccCCe
Confidence 345899999999999999999875322 2232 1 111 122222221 133444444444 45999
Q ss_pred EEEEcCCCCH-------------HHHHHHHcccCC--CCCCcEEEE-EeCchhhHhhc-C---CceeEecCCCChHHHHH
Q 043250 276 LIVFDDVSHR-------------RQIESLIGCLDE--LASGSRVII-TTRDKQVLKTC-W---ASQIYQMKELVYADAHK 335 (507)
Q Consensus 276 LlVlDdv~~~-------------~~~~~l~~~l~~--~~~~~~ili-TtR~~~~~~~~-~---~~~~~~l~~L~~~ea~~ 335 (507)
+|+||.+++. ..+.+++..+.. .-.|..|+- |||...+-+.+ . .+..+.-+.-+..|-.+
T Consensus 763 iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~ 842 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLE 842 (952)
T ss_pred EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHH
Confidence 9999999653 235667666652 224555554 56655433322 1 22333334445556666
Q ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHhCCChHH
Q 043250 336 LFCQCAFGGDHPDASHTELTDRAIKYAQGVPLA 368 (507)
Q Consensus 336 L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 368 (507)
.|....-... .......+.++.+++|..-|
T Consensus 843 il~~ls~s~~---~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 843 ILQVLSNSLL---KDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHhhccC---CccccchHHHhhhcCCCchh
Confidence 6655441111 11122356677777776543
No 245
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.79 E-value=0.01 Score=50.86 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=56.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
...+++|.|+.|.|||||++.++..... ....+++.......-...+..- ....-.+.+.+..++-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~lS~G-------------~~~rv~laral~~~p~ 90 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQLSGG-------------EKMRLALAKLLLENPN 90 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEccCCHH-------------HHHHHHHHHHHhcCCC
Confidence 3468999999999999999999875432 2344444311000000000000 0000114555667778
Q ss_pred EEEEcCCC---CHHHHHHHHcccCCCCCCcEEEEEeCchhhHhh
Q 043250 276 LIVFDDVS---HRRQIESLIGCLDELASGSRVIITTRDKQVLKT 316 (507)
Q Consensus 276 LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~ 316 (507)
++++|+.. +......+...+... +..||++|.+......
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 99999883 333333333333222 2468888877655543
No 246
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.021 Score=60.29 Aligned_cols=91 Identities=26% Similarity=0.372 Sum_probs=54.1
Q ss_pred cccccchHHHHHHhhhc----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH
Q 043250 176 LVGVECPIEEIESLLCI----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 245 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (507)
+=|-++-..+|.+-+.. +-....-|.++|+||.|||-||++++-+..-. |++ + .+.
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-V------KGP-- 739 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-V------KGP-- 739 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-e------cCH--
Confidence 33455555566654432 11224568999999999999999999764332 222 1 111
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHc-CCcEEEEEcCCCC
Q 043250 246 LQKKLLSELLNDGNRRNIESQLNRLA-RKKVLIVFDDVSH 284 (507)
Q Consensus 246 l~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~ 284 (507)
++++...++ ...++.++.++.+ .++|+|+||.+++
T Consensus 740 ---ELLNMYVGq-SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVGQ-SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhcc-hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222222222 2345555555544 4899999999975
No 247
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.78 E-value=0.0079 Score=69.69 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=23.5
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++-|.++|++|+|||.||+++|...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 346679999999999999999999864
No 248
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.75 E-value=0.0036 Score=57.99 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=31.4
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
+..++.+.+.+..++..+|+|+|+||.|||||..++...+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445555555445567899999999999999999999877654
No 249
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.74 E-value=0.04 Score=53.72 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=35.9
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCC-CChHHHHHHHHHHhCCChHHH
Q 043250 322 IYQMKELVYADAHKLFCQCAFGGDHPD-ASHTELTDRAIKYAQGVPLAL 369 (507)
Q Consensus 322 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal 369 (507)
++++++++.+|+..++....-.+-... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774443332 344556677777779999754
No 250
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.74 E-value=0.001 Score=55.59 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=20.5
Q ss_pred EEEeccccchhhHHHHHHHhhh
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
|+|.|.+|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 251
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.74 E-value=0.0018 Score=57.76 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=31.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...+|.++|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999998877766666663
No 252
>PRK14974 cell division protein FtsY; Provisional
Probab=96.73 E-value=0.011 Score=58.09 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
++.+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999998876554
No 253
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.71 E-value=0.0075 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987643
No 254
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.69 E-value=0.0017 Score=66.88 Aligned_cols=50 Identities=28% Similarity=0.268 Sum_probs=41.3
Q ss_pred CccccccchHHHHHHhhhc----CCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 174 KGLVGVECPIEEIESLLCI----GSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..++|.+..+++|.+.|.. -....++++++||+|+|||+||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3689999999999998832 2345689999999999999999999985543
No 255
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.022 Score=59.56 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=93.5
Q ss_pred cCCccccccchHHHHHHh---hhcCC-------CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC
Q 043250 172 ENKGLVGVECPIEEIESL---LCIGS-------EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG 241 (507)
Q Consensus 172 ~~~~~vGR~~el~~l~~~---L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (507)
.....-|.+...+++.+. |.... .-++-|.++|+||.|||.||++++-+..-.| .. .+- .
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~----iSG-S 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISG-S 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee----ccc-h
Confidence 345678888776666554 43221 2266799999999999999999997643222 11 000 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHH-HHHHHcCCcEEEEEcCCCCH----------------HHHHHHHcccCCCCC--Cc
Q 043250 242 GIKDLQKKLLSELLNDGNRRNIES-QLNRLARKKVLIVFDDVSHR----------------RQIESLIGCLDELAS--GS 302 (507)
Q Consensus 242 ~~~~l~~~l~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~--~~ 302 (507)
++. ... .......+.. ..+..++-++++++|.++.. +.+.+++.....++. |.
T Consensus 218 ~FV-------emf-VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 218 DFV-------EMF-VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred hhh-------hhh-cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 000 000 1111222222 33445667899999988531 246666666555443 33
Q ss_pred EEEEEeCchhhH-hhc----CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChH
Q 043250 303 RVIITTRDKQVL-KTC----WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPL 367 (507)
Q Consensus 303 ~iliTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 367 (507)
.|+..|-.++++ +.+ .....+.++..+...-.+.+.-++......+.. + ...|++.+-|.-.
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V--d-l~~iAr~tpGfsG 356 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV--D-LKKIARGTPGFSG 356 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC--C-HHHHhhhCCCccc
Confidence 333333333332 221 235567777777777777777666333222111 1 2337777776543
No 256
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.01 Score=54.67 Aligned_cols=90 Identities=24% Similarity=0.387 Sum_probs=52.3
Q ss_pred cccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHH
Q 043250 176 LVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIK 244 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (507)
.=|-.++++.|.+.... +-+.++-|.++|++|.|||-+|++++++. ..+|+..++.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigs-------- 245 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS-------- 245 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH--------
Confidence 33455556655553321 22456779999999999999999999974 3456653322
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHcC-CcEEEEEcCCC
Q 043250 245 DLQKKLLSELLNDGNRRNIESQLNRLAR-KKVLIVFDDVS 283 (507)
Q Consensus 245 ~l~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 283 (507)
++.+..... ....+.++.+..+. |-++++||.++
T Consensus 246 elvqkyvge-----garmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 246 ELVQKYVGE-----GARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHhhh-----hHHHHHHHHHHhcccceEEEEeeccc
Confidence 111111110 01223345555555 56888999884
No 257
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.66 E-value=0.0073 Score=54.00 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=60.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHH------HHHHHHHHHhcCC----CCCCHH-
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKD------LQKKLLSELLNDG----NRRNIE- 264 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~------l~~~l~~~~~~~~----~~~~~~- 264 (507)
...+++|.|+.|.|||||++.++..... ....+++.... ... ..... ...+++..+.-.. ....+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-LAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-CCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3468999999999999999999875433 34445543211 100 01111 1111222221111 011111
Q ss_pred ------HHHHHHcCCcEEEEEcCCC---CHHHHHHHHcccCCC-CC-CcEEEEEeCchhhHh
Q 043250 265 ------SQLNRLARKKVLIVFDDVS---HRRQIESLIGCLDEL-AS-GSRVIITTRDKQVLK 315 (507)
Q Consensus 265 ------~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~~-~~~iliTtR~~~~~~ 315 (507)
.+.+.+...+-++++|+.. +....+.+...+... .. +..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1566677788999999883 333333333322211 22 567888888776543
No 258
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.66 E-value=0.056 Score=58.64 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 173 NKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+.++|.+..+.++.+.+..-......|.|+|.+|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568999998888887776433333458899999999999999998753
No 259
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.65 E-value=0.012 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.2
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
...+++.|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 34678999999999999999976
No 260
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.64 E-value=0.059 Score=56.72 Aligned_cols=50 Identities=22% Similarity=0.072 Sum_probs=37.9
Q ss_pred ccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 171 SENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 171 ~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+.++|....++++.+.+..-......|.|+|.+|+||+.||+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34467999999988888776542223345889999999999999997653
No 261
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.036 Score=55.25 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=81.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKVL 276 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~L 276 (507)
.|-..++||||.|||+++.++++.+. .-++...+..... -.+ ++.++.. ...+-+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~---n~d-Lr~LL~~-----------------t~~kSI 289 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKL---DSD-LRHLLLA-----------------TPNKSI 289 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccC---cHH-HHHHHHh-----------------CCCCcE
Confidence 46689999999999999999998652 2344433322211 111 2333222 235567
Q ss_pred EEEcCCCCHH--------------------HHHHHHcccC--CCCC-CcEE-EEEeCchhhHhh--c---CCceeEecCC
Q 043250 277 IVFDDVSHRR--------------------QIESLIGCLD--ELAS-GSRV-IITTRDKQVLKT--C---WASQIYQMKE 327 (507)
Q Consensus 277 lVlDdv~~~~--------------------~~~~l~~~l~--~~~~-~~~i-liTtR~~~~~~~--~---~~~~~~~l~~ 327 (507)
|||.|++..- .+.-|+..+. |..+ +-|| ++||-..+-+.. + ..+-.+.+.-
T Consensus 290 ivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgy 369 (457)
T KOG0743|consen 290 LLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY 369 (457)
T ss_pred EEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCC
Confidence 7777774320 1222333332 2222 3355 557755433221 1 1234577888
Q ss_pred CChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 328 LVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 328 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
=+.+.-..|+........ ...++.+|.+...+.-+.=..++..|
T Consensus 370 Ctf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 370 CTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 888888888877762222 13446666665566555445555544
No 262
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.61 E-value=0.0079 Score=58.50 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 184 EEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..|..+|. .+-+..+++-|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555554 33345778999999999999999999887665556677776
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.027 Score=56.01 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=45.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccc--cceEEEEechhhhccCCHHHHHHHHHHHHhcCCC----CCCHHHHHHH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFALNVREAEETGGIKDLQKKLLSELLNDGN----RRNIESQLNR 269 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~~~l~~~ 269 (507)
...+++++|++|+||||++..++.+....+ ..+.++. .... ..+-.+-+..+...++.... ...+......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~--R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSY--RIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccc--cccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 357899999999999999999998764433 2333333 2111 11222333333333322111 2234444445
Q ss_pred HcCCcEEEEEcCC
Q 043250 270 LARKKVLIVFDDV 282 (507)
Q Consensus 270 l~~~~~LlVlDdv 282 (507)
+.++ -++++|..
T Consensus 213 l~~~-DlVLIDTa 224 (374)
T PRK14722 213 LRNK-HMVLIDTI 224 (374)
T ss_pred hcCC-CEEEEcCC
Confidence 5555 45669988
No 264
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.011 Score=52.26 Aligned_cols=121 Identities=18% Similarity=0.285 Sum_probs=61.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC--CCC-----H-----
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN--RRN-----I----- 263 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~-----~----- 263 (507)
...+++|.|+.|.|||||.+.++..... ....+++.... ... .........+ ..+..... ... +
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHH
Confidence 3468999999999999999999875432 23444443211 000 0000000000 00000000 000 0
Q ss_pred H--HHHHHHcCCcEEEEEcCCC---CHHH---HHHHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEec
Q 043250 264 E--SQLNRLARKKVLIVFDDVS---HRRQ---IESLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQM 325 (507)
Q Consensus 264 ~--~l~~~l~~~~~LlVlDdv~---~~~~---~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 325 (507)
. .+.+.+..++-+++||+-. +... +..++..+. .+..||++|.+...... ..+++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 0 1455667788899999883 2222 333333332 34678888888766543 3444444
No 265
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.59 E-value=0.0017 Score=58.93 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=23.3
Q ss_pred EEEEeccccchhhHHHHHHHhhhccc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 266
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.012 Score=51.57 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=23.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+.|.|+.|+|||||.+.++--++..
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 3468899999999999999998755444
No 267
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.57 E-value=0.0017 Score=53.45 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEeccccchhhHHHHHHHhhhcccccc
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRHFEG 227 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 227 (507)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988777754
No 268
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.56 E-value=0.013 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
++.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 269
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.56 E-value=0.0058 Score=57.80 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.5
Q ss_pred EEEEeccccchhhHHHHHHHhhhccc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
+|.++|++|+||||+|+.++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 270
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.013 Score=53.03 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=56.9
Q ss_pred EEEeccccchhhHHHHHHHhhhccc---c-cceEEEEech-hhhc-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-cC
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRH---F-EGSYFALNVR-EAEE-TGGIKDLQKKLLSELLNDGNRRNIESQLNRL-AR 272 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~---f-~~~~~~~~~~-~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l-~~ 272 (507)
..|.|+||+|||||.+.+++-+... | +..+-+.+-+ +... ..+.. +..+...+.-.++-...+-+.... ..
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvp--q~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVP--QHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCc--hhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 6789999999999999999865443 2 2333332221 1110 00000 011111111111101111122223 34
Q ss_pred CcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 273 KKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 273 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
.+=++|+|.+-..++..+++..+ ..|.+++.|..-.
T Consensus 218 ~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 218 SPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred CCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 68899999998877777766654 4788877776543
No 271
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.53 E-value=0.062 Score=50.09 Aligned_cols=208 Identities=13% Similarity=0.145 Sum_probs=112.5
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc------ccceEEEEechh------hh---
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFALNVRE------AE--- 238 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~------~~--- 238 (507)
..+.++++.-..+..... .++.+-..++|++|.||-|.+..+.+++.+- -+..-|...... .+
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346777766667776654 3456778999999999999999888865331 122233321111 00
Q ss_pred --------ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE-EEEEcCCCCH--HHHHHHHcccCCCCCCcEEEEE
Q 043250 239 --------ETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV-LIVFDDVSHR--RQIESLIGCLDELASGSRVIIT 307 (507)
Q Consensus 239 --------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iliT 307 (507)
....-.-+.+.++..+...... +....+++ ++|+-.++.. +.-.++..........+|+|+.
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi-------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~ 163 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI-------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILV 163 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch-------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEE
Confidence 0111122334444443322110 01122333 5666666532 2222233222223567787765
Q ss_pred eCch-hh-HhhcCCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCChHHHHHHHhhhC--C-----
Q 043250 308 TRDK-QV-LKTCWASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVPLALKVLGCHLC--G----- 378 (507)
Q Consensus 308 tR~~-~~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~--~----- 378 (507)
.-+. .+ .+.-...-.+++...+++|....++...-..... ...+++.+|+++++|+-.---++....+ +
T Consensus 164 cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~--lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a 241 (351)
T KOG2035|consen 164 CNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ--LPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTA 241 (351)
T ss_pred ecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc--CcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccc
Confidence 4332 12 2211245578999999999999998877433332 2378899999999998532222222221 1
Q ss_pred ----CCHHHHHHHHHHHh
Q 043250 379 ----RSKEEWESAMRKLE 392 (507)
Q Consensus 379 ----~~~~~~~~~l~~l~ 392 (507)
....+|+-.+.+..
T Consensus 242 ~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 242 NSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cCCCCCCccHHHHHHHHH
Confidence 23467887777653
No 272
>PRK07261 topology modulation protein; Provisional
Probab=96.52 E-value=0.0017 Score=57.51 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|+|+|++|+||||||+.++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 273
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.024 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.138 Sum_probs=22.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 274
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.51 E-value=0.0013 Score=53.21 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.6
Q ss_pred EEEeccccchhhHHHHHHHhhhccc
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
|.|+|++|+|||+||..++..+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999876544
No 275
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.50 E-value=0.002 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 276
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.11 Score=48.01 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=33.1
Q ss_pred ccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 175 GLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+=|-+.++++|.+.+-- +-..++-+..+|+||.|||-+|++.+.+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 444566666666554321 123456789999999999999999987643
No 277
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.48 E-value=0.0067 Score=57.72 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=23.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+.|.|+|.||+||||+|+++...+...-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 57899999999999999999987765433344443
No 278
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0048 Score=58.05 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=34.5
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE 226 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 226 (507)
.+|...+.+..++..+|+|+|.||+|||||...+..++..+-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 4556666656677889999999999999999999988766544
No 279
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.46 E-value=0.019 Score=51.08 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=58.5
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEec--hhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNV--REAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKK 274 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 274 (507)
..+++|.|+.|+|||||.+.++..... ....+.+... ........+..= ....-.+.+.+..++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~LSgG-------------q~qrv~laral~~~p 90 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYIDLSGG-------------ELQRVAIAAALLRNA 90 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCCCCHH-------------HHHHHHHHHHHhcCC
Confidence 457999999999999999998875432 2333333211 000000000000 000111555667778
Q ss_pred EEEEEcCCC---CHHHHH---HHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEecC
Q 043250 275 VLIVFDDVS---HRRQIE---SLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQMK 326 (507)
Q Consensus 275 ~LlVlDdv~---~~~~~~---~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~ 326 (507)
-++++|+-. +....+ .++..+.. ..+..||++|.+....... ...++.+.
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 899999883 333322 22222211 1225677777776554432 23444444
No 280
>PTZ00301 uridine kinase; Provisional
Probab=96.45 E-value=0.0024 Score=58.44 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=24.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..+|+|.|.+|+||||||+.+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999998876443
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.44 E-value=0.03 Score=49.30 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=61.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEe---chhhhccC--CHHHHHHHHHHHHhcCCCCCC--HH--HH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALN---VREAEETG--GIKDLQKKLLSELLNDGNRRN--IE--SQ 266 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~--~~--~l 266 (507)
....++|.|+.|.|||||++.++...... ...+++.. +.-..+.. ....+.+.+... .....+. .. .+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~l 102 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc--CCCCCCHHHHHHHHH
Confidence 34679999999999999999998754322 22222211 00001111 011222222110 1111111 11 15
Q ss_pred HHHHcCCcEEEEEcCCC---CHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEec
Q 043250 267 LNRLARKKVLIVFDDVS---HRRQIESLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQM 325 (507)
Q Consensus 267 ~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 325 (507)
.+.+..++-++++|+-. +....+.+...+... +..||++|.+..... ...+++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 66677788899999873 333333333333222 356778887765543 24444444
No 282
>PRK08233 hypothetical protein; Provisional
Probab=96.43 E-value=0.0024 Score=57.07 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 283
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.43 E-value=0.029 Score=50.05 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=61.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHH--------------HHHHHHhcCCCCC
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK--------------KLLSELLNDGNRR 261 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~--------------~l~~~~~~~~~~~ 261 (507)
...+++|.|+.|+|||||++.++..... ....+++... ..... ...... .+...+...-...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PVSDL--EKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EHHHH--HHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 3457999999999999999999875432 2334444311 00000 000000 0000000000000
Q ss_pred CHH--HHHHHHcCCcEEEEEcCCC---CHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEec
Q 043250 262 NIE--SQLNRLARKKVLIVFDDVS---HRRQIESLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQM 325 (507)
Q Consensus 262 ~~~--~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 325 (507)
... .+.+.+-.++-++++|+.. +....+.+...+.....+..||++|.+...... ....+.+
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 011 1556667788899999884 223223332222211235678888888766543 3444443
No 284
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.42 E-value=0.016 Score=50.76 Aligned_cols=111 Identities=19% Similarity=0.118 Sum_probs=59.0
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHh--cC------CC-C-------C
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELL--ND------GN-R-------R 261 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~------~~-~-------~ 261 (507)
..|-|++..|.||||.|..++.+...+-..++.+.-+... ...+-...+..+.-.+. .. .+ . .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 4677888899999999999998776654444333322211 11222223332200000 00 00 0 0
Q ss_pred CHHHHHHHHcCC-cEEEEEcCCC--------CHHHHHHHHcccCCCCCCcEEEEEeCchh
Q 043250 262 NIESQLNRLARK-KVLIVFDDVS--------HRRQIESLIGCLDELASGSRVIITTRDKQ 312 (507)
Q Consensus 262 ~~~~l~~~l~~~-~~LlVlDdv~--------~~~~~~~l~~~l~~~~~~~~iliTtR~~~ 312 (507)
.++..++.+... -=|||||.+. +.+.+-.++ ....++..||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL---~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEAL---QERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHH---HhCCCCCEEEEECCCCC
Confidence 111134444444 4599999983 233333443 33356778999999873
No 285
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.41 E-value=0.013 Score=58.31 Aligned_cols=102 Identities=21% Similarity=0.333 Sum_probs=60.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCCcE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARKKV 275 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 275 (507)
.++-+-|||..|.|||.|+-.+++.+...-...+.+. .-+.++...+-. +. ...+.+..+.+.+.++..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------~Fm~~vh~~l~~-~~--~~~~~l~~va~~l~~~~~ 129 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------EFMLDVHSRLHQ-LR--GQDDPLPQVADELAKESR 129 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------HHHHHHHHHHHH-Hh--CCCccHHHHHHHHHhcCC
Confidence 4677899999999999999999986543211111110 111222222221 11 235567777888888888
Q ss_pred EEEEcCC--CCHH---HHHHHHcccCCCCCCcEEEEEeCch
Q 043250 276 LIVFDDV--SHRR---QIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 276 LlVlDdv--~~~~---~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
||.||++ .+.. -+..++..+- ..|. +||+|.|.
T Consensus 130 lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 130 LLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred EEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 9999988 3333 2455555443 4566 45555443
No 286
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0095 Score=55.57 Aligned_cols=119 Identities=20% Similarity=0.202 Sum_probs=67.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEech--hhhccCCHHHHHHHHHHHHhcCCC-----C-----CCH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVR--EAEETGGIKDLQKKLLSELLNDGN-----R-----RNI 263 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~-----~-----~~~ 263 (507)
...+++|+|.+|+|||||++.+..-.... .+.+++..-. ..+ .....+...+++...+.... . ...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45679999999999999999999855433 3334443111 111 12233334445554442221 0 111
Q ss_pred HH--HHHHHcCCcEEEEEcCCCC------HHHHHHHHcccCCCCCCcEEEEEeCchhhHhhc
Q 043250 264 ES--QLNRLARKKVLIVFDDVSH------RRQIESLIGCLDELASGSRVIITTRDKQVLKTC 317 (507)
Q Consensus 264 ~~--l~~~l~~~~~LlVlDdv~~------~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~ 317 (507)
+. +.+.|.-++-++|.|..-+ ..++-.++..+.. ..|...+..|-+-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 11 6777888999999998732 2344444444332 2355567777666665543
No 287
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.38 E-value=0.0072 Score=57.75 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=28.2
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
...++++++|++|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468899999999999999999998776543333333
No 288
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.012 Score=55.43 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=26.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHF 225 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 225 (507)
.+..++|||++|.|||-||+.++..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999999876554
No 289
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.37 E-value=0.0031 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEeccccchhhHHHHHHHhhh
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 290
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=96.37 E-value=0.009 Score=49.37 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=50.5
Q ss_pred cEEEcCccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCcccHHHHHHhhhcceEEEEecC
Q 043250 3 DVFLSFRGEDTRDNFTSILHYVLSLKSIKTFIDD-QLIRGENISHSLLDTIEASSISIIIFSQ 64 (507)
Q Consensus 3 dvFis~~~~d~~~~~~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~s~ 64 (507)
-|||.|+ +| ..+++.+...|+..|+.+.+=. ....|..+.+.+.+.+.+++..|+++||
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~Tp 60 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTP 60 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcc
Confidence 3899997 66 5688999999998888776543 5588999999999999999999999998
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.36 E-value=0.017 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.3
Q ss_pred CceEEEEeccccchhhHHHHHHH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVF 218 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~ 218 (507)
...+++|.|+.|+|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999885
No 292
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.35 E-value=0.05 Score=60.63 Aligned_cols=193 Identities=22% Similarity=0.221 Sum_probs=95.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccc----cceEEEEechhhhccCCHH--HHHHHHHHHHhcCCC-CCCHHHHHHHH
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHF----EGSYFALNVREAEETGGIK--DLQKKLLSELLNDGN-RRNIESQLNRL 270 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~-~~~~~~l~~~l 270 (507)
.-+.|.|.+|+||||+...++-....+. +..+++..-.......... .+..-+...+..... ........+.+
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~l 302 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQELL 302 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHHH
Confidence 3688999999999999999887543322 2223332110000000011 122222222222221 12222235788
Q ss_pred cCCcEEEEEcCCCCHHH------HHHHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEecCCCChHHHHHHHHH-----
Q 043250 271 ARKKVLIVFDDVSHRRQ------IESLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQMKELVYADAHKLFCQ----- 339 (507)
Q Consensus 271 ~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~----- 339 (507)
...++++++|.++.... +..+-..+++ -+.+.+|+|+|....-.........++..+.+..-.+....
T Consensus 303 ~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~ 381 (824)
T COG5635 303 KTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDA 381 (824)
T ss_pred hccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHH
Confidence 89999999999875432 2222222222 46788999998775543333344556666666554433331
Q ss_pred hhcC--CCCCCCChHHHH-------HHHHHHhCCChHHHHHHHhhhC------CCCHHHHHHHHHHHh
Q 043250 340 CAFG--GDHPDASHTELT-------DRAIKYAQGVPLALKVLGCHLC------GRSKEEWESAMRKLE 392 (507)
Q Consensus 340 ~~~~--~~~~~~~~~~~~-------~~i~~~~~G~PLal~~~~~~l~------~~~~~~~~~~l~~l~ 392 (507)
.... +..+... .+.. ..-.+.....|+.|.+.+..-. ....+-++..++.+-
T Consensus 382 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 382 FIEDWFGDSRLLA-KKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHhhhcccchhh-HHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 1111 1111110 0111 1233444888999988884432 134455555555543
No 293
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.0049 Score=53.33 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=29.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
...+|.++|++|+||||+|.++.+.+....-....+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457899999999999999999999887765444443
No 294
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.35 E-value=0.0057 Score=58.14 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=30.3
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
....++.|+|++|+|||+||.+++......-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678999999999999999999876544455677776
No 295
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.089 Score=51.77 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=38.4
Q ss_pred CceeEecCCCChHHHHHHHHHhhcCCCCC-CCChHHHHHHHHHHhCCChHHHHHHHhhh
Q 043250 319 ASQIYQMKELVYADAHKLFCQCAFGGDHP-DASHTELTDRAIKYAQGVPLALKVLGCHL 376 (507)
Q Consensus 319 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~l 376 (507)
...+++++..+.+|+.++...+.-..-.. ....++.-+++.-..+|+|--++.++.++
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 34568999999999999876655221111 11114456778888899997777776654
No 296
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.34 E-value=0.0033 Score=57.74 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=24.3
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....+|+|.|++|+|||||+..++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 297
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.33 E-value=0.087 Score=54.90 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++|+...+..+.+.+..-......|.|+|.+|+|||++|+.+.+..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999999988887776434445568899999999999999988753
No 298
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.33 E-value=0.0049 Score=57.48 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 194 SEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 194 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
.+...+++|.|++|+|||||++.++..+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3467899999999999999999999876554
No 299
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.32 E-value=0.015 Score=51.08 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=59.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHH--HHHHHHcCC
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIE--SQLNRLARK 273 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~l~~~l~~~ 273 (507)
....++|.|+.|.|||||.+.++..... ....+++... .... ............ ...+-...... .+.+.+-..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~-~~~~-~~~~~~~~~~i~-~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGK-EVSF-ASPRDARRAGIA-MVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-ECCc-CCHHHHHhcCeE-EEEecCHHHHHHHHHHHHHhcC
Confidence 3457999999999999999999875432 3444554321 1110 011111100000 00000000011 155666778
Q ss_pred cEEEEEcCCC---CHHHHHHHHcccCCC-CCCcEEEEEeCchhhHh
Q 043250 274 KVLIVFDDVS---HRRQIESLIGCLDEL-ASGSRVIITTRDKQVLK 315 (507)
Q Consensus 274 ~~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~iliTtR~~~~~~ 315 (507)
+-++++|+.. +....+.+...+... ..+..||++|.+.....
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 8899999883 333333333222211 24667888888876444
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.011 Score=59.20 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988654
No 301
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.31 E-value=0.0033 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|.|+|++|+||||+|+.+++++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999986
No 302
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.30 E-value=0.038 Score=48.65 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHHcCCcEEEEEcCC----CCHHHHH--HHHcccCCCCCCcEEEEEeCchhhHhhc
Q 043250 266 QLNRLARKKVLIVFDDV----SHRRQIE--SLIGCLDELASGSRVIITTRDKQVLKTC 317 (507)
Q Consensus 266 l~~~l~~~~~LlVlDdv----~~~~~~~--~l~~~l~~~~~~~~iliTtR~~~~~~~~ 317 (507)
+.+.+-++|-+|+-|.- +....|+ .++..++ ..|..||++|-+..+...+
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence 66777889999999955 3333332 2333333 5789999999999887765
No 303
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.30 E-value=0.0085 Score=59.52 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=53.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhccccc---ceEEEEechhhhccCCHHHHHH--HHHHHHhcCCCCCCH-HHHHHHH
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFALNVREAEETGGIKDLQK--KLLSELLNDGNRRNI-ESQLNRL 270 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~~~~-~~l~~~l 270 (507)
...|+|+|+.|+||||++..+...+....+ ..+.+.+-.+. ....... ....+.......... ..++..|
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~----~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aL 209 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF----VYDEIETISASVCQSEIPRHLNNFAAGVRNAL 209 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE----eccccccccceeeeeeccccccCHHHHHHHHh
Confidence 468999999999999999999887644332 12222211111 1111000 000010000011223 3377888
Q ss_pred cCCcEEEEEcCCCCHHHHHHHHcc
Q 043250 271 ARKKVLIVFDDVSHRRQIESLIGC 294 (507)
Q Consensus 271 ~~~~~LlVlDdv~~~~~~~~l~~~ 294 (507)
+..+-.+++..+.+.+.....+..
T Consensus 210 R~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 210 RRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred ccCCCEEeeeeeCCHHHHHHHHHH
Confidence 999999999999988877655444
No 304
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.29 E-value=0.0051 Score=51.53 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=28.6
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+..++-+.|...-....++.+.|..|+|||||++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443322344589999999999999999999865
No 305
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.29 E-value=0.018 Score=51.16 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=61.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC--CCCH----------
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN--RRNI---------- 263 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~---------- 263 (507)
...+++|.|+.|+|||||.+.++..... ....+.+... .... .........+. ....... ...+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~-~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGA-DISQ-WDPNELGDHVG-YLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCE-Eccc-CCHHHHHhheE-EECCCCccccCcHHHHCcCHHHH
Confidence 3457999999999999999999875432 2333443211 0000 01111111000 0000000 0000
Q ss_pred H--HHHHHHcCCcEEEEEcCCC---CHHH---HHHHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEec
Q 043250 264 E--SQLNRLARKKVLIVFDDVS---HRRQ---IESLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQM 325 (507)
Q Consensus 264 ~--~l~~~l~~~~~LlVlDdv~---~~~~---~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l 325 (507)
. .+.+.+-.++=++++|+.. +... +..++..+. ..|..||++|.+..... . ..+++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 1 1555566777899999883 2322 333333322 23667888888776553 2 4444444
No 306
>PRK04040 adenylate kinase; Provisional
Probab=96.27 E-value=0.004 Score=55.98 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.9
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+|+|+|++|+||||+++.+++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 307
>PRK03839 putative kinase; Provisional
Probab=96.27 E-value=0.0033 Score=56.26 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999763
No 308
>PRK15115 response regulator GlrR; Provisional
Probab=96.26 E-value=0.16 Score=52.41 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=35.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++|....+..+.+....-......+.|+|.+|+|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888888777766554322334567899999999999999888743
No 309
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.23 E-value=0.2 Score=52.45 Aligned_cols=59 Identities=20% Similarity=0.380 Sum_probs=35.9
Q ss_pred HHHHHcCCcEEEEEcCCC---CHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhcCCceeEecCC
Q 043250 266 QLNRLARKKVLIVFDDVS---HRRQIESLIGCLDELASGSRVIITTRDKQVLKTCWASQIYQMKE 327 (507)
Q Consensus 266 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~~~~~~~~l~~ 327 (507)
+...+-.++=+||||.-- +.+.++.+-..+.. -+| .||+.|-+....... ...++.+++
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~Fl~~v-a~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRYFLDRV-ATRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHHHHHhh-cceEEEEcC
Confidence 445566788899999763 33334444333332 234 488888888877665 355666654
No 310
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.22 E-value=0.019 Score=54.63 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=63.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC-------CCC---HHH
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN-------RRN---IES 265 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~---~~~ 265 (507)
....++|.|++|+|||||.+.++..+... ...+++... .........++...+ ..+ .+.. .+. ...
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~-~~~-~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCV-NGV-PQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHh-ccc-ccccccccccccccchHHHH
Confidence 34679999999999999999999876543 333333211 011001111221111 000 0000 111 112
Q ss_pred HHHHHc-CCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCchhh
Q 043250 266 QLNRLA-RKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDKQV 313 (507)
Q Consensus 266 l~~~l~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~~~ 313 (507)
+...+. ..+-++++|.+...+.+..+...+. .|..+|+||-+..+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 333333 5788999999988777777766643 57789999987655
No 311
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.21 E-value=0.0023 Score=61.34 Aligned_cols=126 Identities=18% Similarity=0.151 Sum_probs=66.4
Q ss_pred ccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHH
Q 043250 175 GLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL 254 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (507)
.+.-.....+.+.++|...-.....+.|+|+.|+||||++..+...+...-...+-+.+..+..... . ....+
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~-~------~~~~~ 177 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG-P------NQIQI 177 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC-S------SEEEE
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc-c------ceEEE
Confidence 3433444445666666533234678999999999999999999987665512333333221111000 0 00000
Q ss_pred hc-CCCCCCHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEE-EEEeCch
Q 043250 255 LN-DGNRRNIESQLNRLARKKVLIVFDDVSHRRQIESLIGCLDELASGSRV-IITTRDK 311 (507)
Q Consensus 255 ~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~i-liTtR~~ 311 (507)
.. ....+-.+.+...|+..+=.++++++.+.+....+... ..|..+ +-|....
T Consensus 178 ~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 178 QTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred EeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 00 11122223367778888889999999887776663332 356666 5554433
No 312
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.17 E-value=0.031 Score=56.97 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+++.++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987665
No 313
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.17 E-value=0.0077 Score=58.66 Aligned_cols=57 Identities=28% Similarity=0.263 Sum_probs=39.3
Q ss_pred cCCccccccchHHH---HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccce
Q 043250 172 ENKGLVGVECPIEE---IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGS 228 (507)
Q Consensus 172 ~~~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 228 (507)
....+||.....+. +.+++..+.-..+.+.|.|++|.|||+||..+++.+....+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 45689998776654 4455554443568899999999999999999999988665533
No 314
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.5 Score=45.37 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCch-hhHhhc-CCceeEecCCCChHHHHHHHHH
Q 043250 272 RKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRDK-QVLKTC-WASQIYQMKELVYADAHKLFCQ 339 (507)
Q Consensus 272 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~ 339 (507)
+++-++|+|+++. ......++..+..-.+++.+|++|.+. .+++.. .....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3556899999964 455677777776555666666666554 444433 2456788876 66776776643
No 315
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.05 Score=59.41 Aligned_cols=99 Identities=15% Similarity=0.250 Sum_probs=65.7
Q ss_pred CccccccchHHHHHHhhhcCC----C--CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHH
Q 043250 174 KGLVGVECPIEEIESLLCIGS----E--GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 247 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~----~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 247 (507)
...+|-+..+..|.+.+.... + ....+.+.|+.|+|||.||++++..+.+..+.-+-+. .+ +..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-ms---------e~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MS---------EFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hh---------hhh
Confidence 356888888888888775411 1 3567889999999999999999998866555444443 21 122
Q ss_pred HHHHHHHhcCCC----CCCHHHHHHHHcCCcE-EEEEcCCCC
Q 043250 248 KKLLSELLNDGN----RRNIESQLNRLARKKV-LIVFDDVSH 284 (507)
Q Consensus 248 ~~l~~~~~~~~~----~~~~~~l~~~l~~~~~-LlVlDdv~~ 284 (507)
+ ...+.+.++ .+....+-+.++++++ +++||||+.
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 2 222222222 4455678888888876 667899963
No 316
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.16 E-value=0.0045 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.5
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
++|.++|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999998753
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.16 E-value=0.044 Score=51.63 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|.|+.|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 318
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.18 Score=48.31 Aligned_cols=126 Identities=8% Similarity=-0.009 Sum_probs=69.8
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-------------cccceEEEEechhhhccCCHHHHHHHH
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-------------HFEGSYFALNVREAEETGGIKDLQKKL 250 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-------------~f~~~~~~~~~~~~~~~~~~~~l~~~l 250 (507)
++|...+..+ .-.....++|+.|+||+++|..++..+-. .++...++...... ..-.
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~~I~-------- 76 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-RLHS-------- 76 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-CcCc--------
Confidence 4455555422 23567889999999999999999986421 12233333210000 0001
Q ss_pred HHHHhcCCCCCCHHHHHHHH-----cCCcEEEEEcCCCC--HHHHHHHHcccCCCCCCcEEEEEeCc-hhhHhh-cCCce
Q 043250 251 LSELLNDGNRRNIESQLNRL-----ARKKVLIVFDDVSH--RRQIESLIGCLDELASGSRVIITTRD-KQVLKT-CWASQ 321 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iliTtR~-~~~~~~-~~~~~ 321 (507)
.+.+.++.+.+ .++.-++|+|+++. .+....++..+..-.+++.+|++|.+ ..+++. .....
T Consensus 77 ---------idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq 147 (290)
T PRK05917 77 ---------IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred ---------HHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcce
Confidence 11122233333 23455888999964 45667777776654566666666655 444433 23466
Q ss_pred eEecCCC
Q 043250 322 IYQMKEL 328 (507)
Q Consensus 322 ~~~l~~L 328 (507)
.+.+.++
T Consensus 148 ~~~~~~~ 154 (290)
T PRK05917 148 SIHIPME 154 (290)
T ss_pred EEEccch
Confidence 7777765
No 319
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.14 E-value=0.0045 Score=55.67 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=48.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHh-cCC-----CCCCH-HHHHHH
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELL-NDG-----NRRNI-ESQLNR 269 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~-----~~~~~-~~l~~~ 269 (507)
...++|.|+.|+|||||++.++..+... ...+.+.+..+..... .... .+. ... ..... +.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 4579999999999999999998765432 2233332211111000 0000 000 000 01122 235566
Q ss_pred HcCCcEEEEEcCCCCHHHHHHH
Q 043250 270 LARKKVLIVFDDVSHRRQIESL 291 (507)
Q Consensus 270 l~~~~~LlVlDdv~~~~~~~~l 291 (507)
++..+-.++++.+.+.+.+..+
T Consensus 97 lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHH
Confidence 7788889999999887765433
No 320
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.13 E-value=0.0085 Score=57.10 Aligned_cols=44 Identities=25% Similarity=0.136 Sum_probs=36.1
Q ss_pred hhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 189 LLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 189 ~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|..+-+..+++.|+|.||+|||+++.++..+...+...++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34333356789999999999999999999998888878888876
No 321
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.13 E-value=0.005 Score=56.48 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.3
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+...+|+|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999998654
No 322
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.13 E-value=0.0095 Score=57.26 Aligned_cols=54 Identities=28% Similarity=0.297 Sum_probs=42.1
Q ss_pred ccCCccccccchHHH---HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 171 SENKGLVGVECPIEE---IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 171 ~~~~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+.|||.....+. +.++...+.-..+.|.|.|++|.|||+||..+++.+...
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456789997765543 456666554557889999999999999999999988654
No 323
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.0063 Score=55.12 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=26.5
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..+.+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346799999999999999999999988755
No 324
>PRK00625 shikimate kinase; Provisional
Probab=96.12 E-value=0.0042 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998763
No 325
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.11 E-value=0.0075 Score=53.65 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=24.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..+++|+|++|+||||+|+.++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999997754
No 326
>PRK06547 hypothetical protein; Provisional
Probab=96.11 E-value=0.0051 Score=54.42 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhh
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....+|+|.|++|+||||+|..+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999864
No 327
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.11 E-value=0.029 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=22.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|.|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 328
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.09 E-value=0.024 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=20.8
Q ss_pred ceEEEEeccccchhhHHHHHHHh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 329
>PF13245 AAA_19: Part of AAA domain
Probab=96.09 E-value=0.011 Score=44.30 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=18.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.+++.|.|+||.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999666555543
No 330
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.025 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998643
No 331
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.07 E-value=0.0048 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=22.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.++|+|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999764
No 332
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.06 E-value=0.049 Score=52.21 Aligned_cols=37 Identities=14% Similarity=-0.139 Sum_probs=28.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 232 (507)
...++.|.|.+|+|||+++.+++...... -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 45688999999999999999998876544 44566665
No 333
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.031 Score=49.59 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998754
No 334
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.02 E-value=0.0068 Score=53.38 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=33.7
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 176 LVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
++|.+..++++.+.+..-......|.|+|.+|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877653333356789999999999999999884
No 335
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.02 E-value=0.0074 Score=58.10 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35699999999999999999999876543
No 336
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.01 E-value=0.014 Score=58.22 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=58.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccccc-c-eEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHcCCc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFE-G-SYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIE-SQLNRLARKK 274 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~l~~~l~~~~ 274 (507)
..+.|+|+.|+||||++..+.+.+....+ . .+-+.+-.+... .....+....-.+++ ....... .++..|+..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~~~~~~~q~evg--~~~~~~~~~l~~aLR~~P 226 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPDDLLPPAQSQIG--RDVDSFANGIRLALRRAP 226 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCceeecccccccC--CCccCHHHHHHHhhccCC
Confidence 46889999999999999999886644322 2 233322111110 000000000000111 1122333 3778889999
Q ss_pred EEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeC
Q 043250 275 VLIVFDDVSHRRQIESLIGCLDELASGSRVIITTR 309 (507)
Q Consensus 275 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR 309 (507)
=.|+++++.+.+..+..+... ..|..++-|--
T Consensus 227 D~I~vGEiRd~et~~~al~aa---~TGH~v~tTlH 258 (372)
T TIGR02525 227 KIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLH 258 (372)
T ss_pred CEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeC
Confidence 999999999988877654442 24444444433
No 337
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.044 Score=54.17 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=28.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+.++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999986644433344443
No 338
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0052 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.7
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+|.|.|+||+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 589999999999999999998753
No 339
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.00 E-value=0.12 Score=50.14 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=30.3
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHH
Q 043250 176 LVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVF 218 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 218 (507)
+-+|..+-.--.++|. .+....|.+.|.+|.|||.||.+..
T Consensus 226 i~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHH
Confidence 4456666555555564 3567899999999999999887755
No 340
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.00 E-value=0.018 Score=62.31 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
+...|+|+|..|+|||||++-+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999998863
No 341
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.00 E-value=0.064 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.2
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+..|.|+||+|||+|+..++..+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998754
No 342
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.98 E-value=0.0072 Score=53.95 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEEeccccchhhHHHHHHHhhhcc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999987654
No 343
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.98 E-value=0.0085 Score=58.54 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=57.7
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccC-CHHHHHHHHHHHHhcCCCCCCH-HHHHHHHcCC
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETG-GIKDLQKKLLSELLNDGNRRNI-ESQLNRLARK 273 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~-~~l~~~l~~~ 273 (507)
....++|+|..|+|||||++.+...+.... ..+.+.+..+..... ....+. ..........-.. +.+...|+..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLF---YSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEE---ecCCCCCcCccCHHHHHHHHhcCC
Confidence 346799999999999999999987664332 233333222221110 000000 0000000001122 3366678888
Q ss_pred cEEEEEcCCCCHHHHHHHHcccCCCCCCcE-EEEEeCch
Q 043250 274 KVLIVFDDVSHRRQIESLIGCLDELASGSR-VIITTRDK 311 (507)
Q Consensus 274 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~-iliTtR~~ 311 (507)
+-.+++|.+.+.+.+. ++.... .|.. ++.|+...
T Consensus 219 pd~ii~gE~r~~e~~~-~l~a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 219 PDRIILGELRGDEAFD-FIRAVN---TGHPGSITTLHAG 253 (308)
T ss_pred CCeEEEeccCCHHHHH-HHHHHh---cCCCeEEEEEeCC
Confidence 9999999998876554 344333 2332 45665544
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.98 E-value=0.02 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred EEEEeccccchhhHHHHHHHhhhccc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
++.++|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999877655
No 345
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.98 E-value=0.022 Score=50.72 Aligned_cols=114 Identities=21% Similarity=0.159 Sum_probs=61.2
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHH-HH---Hhc------CCCCC-----
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL-SE---LLN------DGNRR----- 261 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-~~---~~~------~~~~~----- 261 (507)
...|.|+|..|-||||.|..++.+...+-..+.++.-+.... ..+-...+..+. -. .+. .....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 457899999999999999999887666544444444332221 122222332210 00 000 00000
Q ss_pred --CHHHHHHHHcC-CcEEEEEcCCCCH-----HHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 262 --NIESQLNRLAR-KKVLIVFDDVSHR-----RQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 262 --~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
.++..++.+.. +-=|||||.+... -..+.++..+....++..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11123444544 4459999999321 12333333333335677899999986
No 346
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.97 E-value=0.061 Score=49.74 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 347
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.96 E-value=0.0077 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEeccccchhhHHHHHHHhhhcc
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
+.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999987743
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.95 E-value=0.0046 Score=55.39 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999865
No 349
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.92 E-value=0.012 Score=57.33 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=36.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHH
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 249 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 249 (507)
.+++.++|.||+||||+|.+.+-...........++ ..+.+++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhcc
Confidence 478999999999999999998887777665555444 4445555555543
No 350
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.92 E-value=0.011 Score=53.83 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=28.7
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 231 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 231 (507)
....+++|+|++|+||||||+.+...+.......+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467899999999999999999998775443334555
No 351
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.92 E-value=0.04 Score=53.75 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc------ccccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS------RHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~------~~f~~~~~~~ 232 (507)
..|.++|..+-....++-|+|++|+|||+|+.+++-... ..-..++|++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 445566654444567889999999999999998875321 1124567776
No 352
>PRK13947 shikimate kinase; Provisional
Probab=95.91 E-value=0.0058 Score=54.08 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.1
Q ss_pred EEEEeccccchhhHHHHHHHhhhcc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998643
No 353
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.91 E-value=0.011 Score=55.03 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=24.6
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.+.+...+.. ..+..|+|+||.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 44556656542 1268999999999998888877766
No 354
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.91 E-value=0.014 Score=60.45 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=65.4
Q ss_pred ccccch-HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHh
Q 043250 177 VGVECP-IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELL 255 (507)
Q Consensus 177 vGR~~e-l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (507)
.|...+ ++.+..++. ....++.|+|+.|+||||+...+.+.+...-...+-+.+-.+.. ..++.+. ++.
T Consensus 224 Lg~~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~-~~~~~q~------~v~ 293 (486)
T TIGR02533 224 LGMSPELLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ-IEGIGQI------QVN 293 (486)
T ss_pred cCCCHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee-cCCCceE------EEc
Confidence 454443 444555543 23357999999999999999988876643322233332111100 0011000 000
Q ss_pred cCCCCCCHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCc
Q 043250 256 NDGNRRNIESQLNRLARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRD 310 (507)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~ 310 (507)
......-...++..|+..+=.+++.++.+.+.....+... ..|..|+-|-..
T Consensus 294 ~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa---~tGHlvlsTlHa 345 (486)
T TIGR02533 294 PKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS---LTGHLVLSTLHT 345 (486)
T ss_pred cccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHH---HhCCcEEEEECC
Confidence 0000122334788899999999999999988765554432 234444444443
No 355
>PHA02244 ATPase-like protein
Probab=95.89 E-value=0.018 Score=56.59 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=33.1
Q ss_pred cCCccccccchHHHH----HHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 172 ENKGLVGVECPIEEI----ESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 172 ~~~~~vGR~~el~~l----~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
....++|....+... ..++.. ...|.|+|++|+|||+||+.+++...
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678877666543 334432 23478899999999999999998754
No 356
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.89 E-value=0.02 Score=57.26 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=35.7
Q ss_pred CccccccchHHHHHHhhhcC------------CCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 174 KGLVGVECPIEEIESLLCIG------------SEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++|.+...+.+.-.+... ...++.|.++|++|+|||+||+.++..+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45677777766665444310 1124678999999999999999999876443
No 357
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.028 Score=53.37 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=37.7
Q ss_pred HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEech
Q 043250 186 IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVR 235 (507)
Q Consensus 186 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 235 (507)
|..+|..+-+..+++=|+|+.|+||||+|.+++-.....-..++|++..+
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 34444433445788899999999999999999887766666889987443
No 358
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.88 E-value=0.015 Score=54.15 Aligned_cols=49 Identities=22% Similarity=0.133 Sum_probs=34.7
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
..|.+.|..+-.....+.|.|.+|+|||+|+.+++......-..++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433345678999999999999999998765444445667775
No 359
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.87 E-value=0.0082 Score=53.91 Aligned_cols=33 Identities=24% Similarity=0.090 Sum_probs=26.9
Q ss_pred EEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999887655555666765
No 360
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.86 E-value=0.071 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....++|.|+.|+|||||++.++...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 361
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.86 E-value=0.081 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.9
Q ss_pred EEEeccccchhhHHHHHHHhhhc
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
++++|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998765
No 362
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.85 E-value=0.006 Score=59.12 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=50.6
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccc--cceEEEEechhhhcc-CCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHcCC
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFALNVREAEET-GGIKDLQKKLLSELLNDGNRRNIES-QLNRLARK 273 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~-l~~~l~~~ 273 (507)
+.+.|+|.+|+||||++..++..+.... ...+-+.+..+.... ... ..+........... +...|+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~--------v~~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNV--------VQLRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCE--------EEEEecCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998775432 223333322221110 000 00000111213333 67778889
Q ss_pred cEEEEEcCCCCHHHHHHH
Q 043250 274 KVLIVFDDVSHRRQIESL 291 (507)
Q Consensus 274 ~~LlVlDdv~~~~~~~~l 291 (507)
+=.+|+..+.+.+.+..+
T Consensus 205 pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 205 PDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCEEEEeccCCHHHHHHH
Confidence 999999999888765543
No 363
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.85 E-value=0.045 Score=51.82 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=32.9
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc--c----cccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS--R----HFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~----~f~~~~~~~ 232 (507)
..|.++|..+-....+.=|+|++|+|||+|+.+++-... . .-..++|++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 356666643333456888999999999999998875432 1 123467776
No 364
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.84 E-value=0.012 Score=62.77 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=46.5
Q ss_pred cccCCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc-cccceEEEEe
Q 043250 170 QSENKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFALN 233 (507)
Q Consensus 170 ~~~~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~ 233 (507)
+..-+.++|.+..++.|...+... +.+.++|++|+||||+|+.+++.+.. .++...|..+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 344567899999888888877532 46899999999999999999987643 3466777764
No 365
>PRK05973 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.014 Score=54.26 Aligned_cols=37 Identities=14% Similarity=-0.066 Sum_probs=29.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...++.|.|.||+|||+|+.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4568999999999999999999886655544555654
No 366
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.81 E-value=0.01 Score=57.65 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=27.3
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+++.+.|-||+||||+|..++-....+-..+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 67899999999999999998887766544455544
No 367
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.057 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|.|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 368
>PRK05439 pantothenate kinase; Provisional
Probab=95.81 E-value=0.01 Score=57.44 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=25.3
Q ss_pred CCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 194 SEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 194 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.+..-+|+|.|.+|+||||+|..+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345779999999999999999999886643
No 369
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.81 E-value=0.043 Score=49.19 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...+++|+|.+|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999987643
No 370
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.059 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999864
No 371
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.80 E-value=0.032 Score=61.19 Aligned_cols=24 Identities=25% Similarity=-0.002 Sum_probs=21.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.+.++|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999988754
No 372
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.79 E-value=0.006 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998863
No 373
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.78 E-value=0.011 Score=52.16 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=30.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc-ccccceEEEEechhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFALNVREAEE 239 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~ 239 (507)
...+.+.|+.|+|||.||+.+++.+. ......+-+ +....+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhcccc
Confidence 45788999999999999999999876 443333333 4444433
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.78 E-value=0.068 Score=45.57 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=31.5
Q ss_pred HHHHHHhhhcceEEEEecCCCcCchhhHHHHHHHHHHHHhCCCeEEeEEEEec
Q 043250 46 HSLLDTIEASSISIIIFSQRYASSRWCLDELLKILECKHNYGQIVIPVFYHVD 98 (507)
Q Consensus 46 ~~i~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~~~~~~~v~pv~~~v~ 98 (507)
.++.++|+.++.+|.|++...-.+.+. .++...+.... .+..++.|+-++|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 467889999999999998765444442 24555554321 2345555654433
No 375
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.77 E-value=0.071 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998643
No 376
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.77 E-value=0.19 Score=51.59 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=45.4
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc-ccccceEEEEechhhhccCCHHHHHHHHHHHH
Q 043250 176 LVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFALNVREAEETGGIKDLQKKLLSEL 254 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (507)
..|...-+..|.+++. +-....++.|.|.||+|||++|..++.... .+-..++|++ . .-...++..+++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l-----Em~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L-----EMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C-----CCCHHHHHHHHHHHH
Confidence 4455555566666554 333456899999999999999999997654 3223344543 1 234555666655543
No 377
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.02 Score=49.83 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=61.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcCCc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGN--RRNIESQLNRLARKK 274 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~l~~~l~~~~ 274 (507)
..+++|.|..|.|||||++.++..+.. ....+++.... ... .........+. .+ .+-. ....-.+...+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~-~~~~~~~~~i~-~~-~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAK-LPLEELRRRIG-YV-PQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-ccc-CCHHHHHhceE-EE-eeCCHHHHHHHHHHHHHhcCC
Confidence 368999999999999999999875532 34445543211 100 00111100000 00 0000 001111455566678
Q ss_pred EEEEEcCCC---CHHHHHHHHcccCCC-CCCcEEEEEeCchhhHhhcCCceeEec
Q 043250 275 VLIVFDDVS---HRRQIESLIGCLDEL-ASGSRVIITTRDKQVLKTCWASQIYQM 325 (507)
Q Consensus 275 ~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~iliTtR~~~~~~~~~~~~~~~l 325 (507)
-++++|+.. +......+...+... ..+..++++|.+....... ..+.+.+
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 899999883 333333332222111 2246688888877665543 2344443
No 378
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.76 E-value=0.0062 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 379
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.76 E-value=0.019 Score=56.23 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=30.8
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..+.+.+....+...+|+|+|.+|+|||||+..+...+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444444334567899999999999999999998877654
No 380
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.75 E-value=0.012 Score=52.76 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=30.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.+++.|+|++|+|||||+..+.......|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 468999999999999999999998888886554443
No 381
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.75 E-value=0.23 Score=51.39 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=36.3
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..++|....++.+...+..-......+.|+|.+|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899998888888777542223344679999999999999999874
No 382
>PRK06217 hypothetical protein; Validated
Probab=95.74 E-value=0.0071 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|+|.|.+|+||||||+.++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 383
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.0071 Score=52.26 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEeccccchhhHHHHHHH
Q 043250 199 KLGIWGIGGIGKTTIAGAVF 218 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~ 218 (507)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 384
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.73 E-value=0.058 Score=53.15 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc------ccccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS------RHFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~------~~f~~~~~~~ 232 (507)
..|.++|..+-....+.-|+|++|+|||+|+.+++-... ..-..++|++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 345556654334567888999999999999999874321 1124567776
No 385
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.72 E-value=0.024 Score=55.13 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=43.8
Q ss_pred CCccccccchHHHHHHhhhcC----CCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 173 NKGLVGVECPIEEIESLLCIG----SEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...|+|.++.++++.+.+... ....+++.+.||.|.|||||+..+.+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 458999999999999988753 2357899999999999999999998866544
No 386
>PRK15453 phosphoribulokinase; Provisional
Probab=95.70 E-value=0.014 Score=55.10 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
....+|+|+|.+|+||||+|+.+++.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999999987654
No 387
>PRK10436 hypothetical protein; Provisional
Probab=95.69 E-value=0.026 Score=57.91 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=59.4
Q ss_pred ccccc-hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHh
Q 043250 177 VGVEC-PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELL 255 (507)
Q Consensus 177 vGR~~-el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (507)
.|... .++.+.+++.. ....|.|+|+.|+||||+...+.+.+...-...+-+.+--+.. ...+.+. ++.
T Consensus 200 LG~~~~~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~-l~gi~Q~------~v~ 269 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP-LAGINQT------QIH 269 (462)
T ss_pred cCcCHHHHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc-CCCcceE------eeC
Confidence 45444 34455555542 3458999999999999988777766533222222222111100 0010000 000
Q ss_pred cCCCCCCHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHcc
Q 043250 256 NDGNRRNIESQLNRLARKKVLIVFDDVSHRRQIESLIGC 294 (507)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 294 (507)
.....+-...++..|+..+=.|++.++.+.+.....+..
T Consensus 270 ~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~A 308 (462)
T PRK10436 270 PKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKA 308 (462)
T ss_pred CccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHH
Confidence 011122233378889999999999999998876654443
No 388
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.69 E-value=0.057 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.3
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.++..|+|.||.||||++..+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~ 192 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALI 192 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999887653
No 389
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.69 E-value=0.0076 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.474 Sum_probs=21.1
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 390
>PRK08506 replicative DNA helicase; Provisional
Probab=95.68 E-value=0.09 Score=54.52 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=46.1
Q ss_pred cccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHH
Q 043250 176 LVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL 254 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (507)
..|-..-+..|.+++. +-....++.|.|.||+|||++|..++.....+-..++|++ -.-+..++..+++...
T Consensus 172 ~~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHh
Confidence 4455555666666542 3334568999999999999999999987644333444443 1345566666665543
No 391
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.68 E-value=0.093 Score=48.64 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|.|||||++.++...
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 392
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.67 E-value=0.0075 Score=51.23 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEeccccchhhHHHHHHHhhhccc
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
++|+|++|+|||||++.++..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 7899999999999999999865443
No 393
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.67 E-value=0.11 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.217 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....++|.|+.|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 394
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.045 Score=51.05 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=34.0
Q ss_pred HHHHHcCCcEEEEEcCCC------CHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhc
Q 043250 266 QLNRLARKKVLIVFDDVS------HRRQIESLIGCLDELASGSRVIITTRDKQVLKTC 317 (507)
Q Consensus 266 l~~~l~~~~~LlVlDdv~------~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~ 317 (507)
+.+.|.+++=|++||.-. ....+-.++..+.. .|..||++|-+-......
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh
Confidence 667788899999999762 22334455555543 388899999887665443
No 395
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.66 E-value=0.0097 Score=53.87 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=22.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++.|+|.+|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 396
>PHA02774 E1; Provisional
Probab=95.65 E-value=0.037 Score=57.39 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=30.4
Q ss_pred hHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc
Q 043250 182 PIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 182 el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
-+..|..+|. +.+....+.|+|++|+|||.+|..+.+-+.
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455666664 334456899999999999999999998764
No 397
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.65 E-value=0.015 Score=49.59 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=26.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccc-ccceEEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAL 232 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 232 (507)
++|.|+|..|+|||||++.+.+.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999988644 44443443
No 398
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.65 E-value=0.015 Score=57.37 Aligned_cols=49 Identities=33% Similarity=0.290 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccccc
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFE 226 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 226 (507)
..++|++..+..+...+..+ +.+.+.|++|+|||+||+.++..+...|.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34889888888877666533 34889999999999999999998765443
No 399
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.64 E-value=0.0089 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.0
Q ss_pred eEEEEeccccchhhHHHHHHHhhhc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988654
No 400
>PTZ00035 Rad51 protein; Provisional
Probab=95.64 E-value=0.093 Score=51.79 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...|.++|..+-....++.|+|++|+|||+|+..++-..
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345666665444457889999999999999999887543
No 401
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.63 E-value=0.078 Score=47.41 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....++|.|+.|.|||||.+.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998754
No 402
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.63 E-value=0.051 Score=51.29 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=56.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHcCCc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELL-NDGNRRNIESQLNRLARKK 274 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~l~~~l~~~~ 274 (507)
....|.|+|+.|+||||-.....+.+-.++...+.-. ..+-.-+..-.+.+..+=. +.+..+-...++..|+.-|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI----EDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDP 199 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI----EDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDP 199 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe----cCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC
Confidence 3468999999999999877666665555555444332 1111111111122222211 1111222344888999999
Q ss_pred EEEEEcCCCCHHHHHHHHcc
Q 043250 275 VLIVFDDVSHRRQIESLIGC 294 (507)
Q Consensus 275 ~LlVlDdv~~~~~~~~l~~~ 294 (507)
=+|++-.+.+.+.+..-+..
T Consensus 200 DVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 200 DVILVGEMRDLETIRLALTA 219 (353)
T ss_pred CEEEEeccccHHHHHHHHHH
Confidence 99999999988887665544
No 403
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.62 E-value=0.053 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998875
No 404
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.076 Score=55.31 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=90.8
Q ss_pred ccccccchHHHHHHhhhc-----------CCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCH
Q 043250 175 GLVGVECPIEEIESLLCI-----------GSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGI 243 (507)
Q Consensus 175 ~~vGR~~el~~l~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (507)
.+-|-...+..+.....- +...++-+.++|++|+|||-|+++++++.. ..+|..+..+
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pe------- 253 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPE------- 253 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHH-------
Confidence 445555566655554321 123467889999999999999999998754 3344432221
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHcCC-cEEEEEcCCCCHH------------HHHHHHcccCCCCCCcE--EEEEe
Q 043250 244 KDLQKKLLSELLNDGNRRNIESQLNRLARK-KVLIVFDDVSHRR------------QIESLIGCLDELASGSR--VIITT 308 (507)
Q Consensus 244 ~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~------------~~~~l~~~l~~~~~~~~--iliTt 308 (507)
+.....++........+.+....+ +.++.+|+++... ...+++..+.+.++.++ +|-||
T Consensus 254 ------li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~at 327 (693)
T KOG0730|consen 254 ------LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAAT 327 (693)
T ss_pred ------HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEec
Confidence 222222221111122244445566 8899999885321 12333333333343333 45566
Q ss_pred CchhhHh-hc---CCceeEecCCCChHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhCCCh
Q 043250 309 RDKQVLK-TC---WASQIYQMKELVYADAHKLFCQCAFGGDHPDASHTELTDRAIKYAQGVP 366 (507)
Q Consensus 309 R~~~~~~-~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 366 (507)
+.+..+. .. .....+.+.-.+..+-.+.++...-.-... .......++..+.|+-
T Consensus 328 nrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 328 NRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred CCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 6553321 11 234456666666666666666555222222 2344566777777764
No 405
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.06 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEeccccchhhHHHHHHHhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
+++|.|+.|+|||||++.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999863
No 406
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.60 E-value=0.0075 Score=54.83 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998866
No 407
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.59 E-value=0.015 Score=58.20 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=37.4
Q ss_pred CccccccchHHHHHHhhhc---------C---CCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 174 KGLVGVECPIEEIESLLCI---------G---SEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~---------~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++|.+...+.+..++.. + ......+.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 4578888887777766632 0 0114678999999999999999999876433
No 408
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.59 E-value=0.0076 Score=55.70 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.7
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998765
No 409
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.58 E-value=0.013 Score=54.52 Aligned_cols=47 Identities=26% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEE
Q 043250 186 IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAL 232 (507)
Q Consensus 186 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 232 (507)
|.+.|..+-+...++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 444554333456789999999999999999988766555 55667765
No 410
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.56 E-value=0.096 Score=47.37 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
....++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 411
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.53 E-value=0.1 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|.|||||.+.++..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 412
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.53 E-value=0.01 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEeccccchhhHHHHHHHhhh
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 413
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.53 E-value=0.073 Score=58.42 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=52.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHH-HHH-----c
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQL-NRL-----A 271 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~-~~l-----~ 271 (507)
+++.|.|.+|+||||++..+...+......++++. . .......+....+. ....+..+. ... -
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A-p---------Tg~Aa~~L~~~~g~-~a~Ti~~~~~~~~~~~~~~ 437 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA-L---------SGKAAEGLQAESGI-ESRTLASLEYAWANGRDLL 437 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe-C---------cHHHHHHHHhccCC-ceeeHHHHHhhhccCcccC
Confidence 57899999999999999998876554322233332 1 01111111111000 112222221 111 1
Q ss_pred CCcEEEEEcCCC--CHHHHHHHHcccCCCCCCcEEEEEeC
Q 043250 272 RKKVLIVFDDVS--HRRQIESLIGCLDELASGSRVIITTR 309 (507)
Q Consensus 272 ~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iliTtR 309 (507)
.+.-|||+|++. +...+..++.... ..|++||+.--
T Consensus 438 ~~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVGD 475 (744)
T TIGR02768 438 SDKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVGD 475 (744)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 245799999994 3444555554322 35788877663
No 414
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.11 Score=47.33 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
...+++|.|+.|+|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346899999999999999999887543
No 415
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.52 E-value=0.012 Score=53.91 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.6
Q ss_pred CCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 193 GSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 193 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
.....+.++|+|++|+|||||+..+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3446788999999999999999998754
No 416
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.52 E-value=0.011 Score=54.68 Aligned_cols=24 Identities=25% Similarity=-0.011 Sum_probs=21.1
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
..++++|.|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999998876
No 417
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.52 E-value=0.023 Score=49.96 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..++++|+|..|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45689999999999999999999877653
No 418
>PRK13949 shikimate kinase; Provisional
Probab=95.51 E-value=0.011 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.7
Q ss_pred EEEEeccccchhhHHHHHHHhhhc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.|.|.|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 419
>PRK13948 shikimate kinase; Provisional
Probab=95.50 E-value=0.012 Score=52.45 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+.|.++|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457799999999999999999998764
No 420
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.49 E-value=0.067 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.141 Sum_probs=22.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.++..|+|.||.||||++..+...+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999998877553
No 421
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.49 E-value=0.017 Score=50.99 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.1
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEe
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALN 233 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 233 (507)
...|.|-|++|+|||+|..+.++.++++|...+.-.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 4789999999999999999999999888887766543
No 422
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.49 E-value=0.046 Score=55.53 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=60.3
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCH
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNI 263 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 263 (507)
+.+.+++. ....++.++|+.|+||||..-.+...+......++-+.+--+. ...++.++. ........-.
T Consensus 248 ~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~-~~~gI~Q~q------VN~k~gltfa 317 (500)
T COG2804 248 ARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY-QLPGINQVQ------VNPKIGLTFA 317 (500)
T ss_pred HHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee-ecCCcceee------cccccCCCHH
Confidence 34444443 3467899999999999999988888765544443333211110 011111110 0001112233
Q ss_pred HHHHHHHcCCcEEEEEcCCCCHHHHHHHHcc
Q 043250 264 ESQLNRLARKKVLIVFDDVSHRRQIESLIGC 294 (507)
Q Consensus 264 ~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 294 (507)
..++..|++-|=+|++..+.|.+..+-....
T Consensus 318 ~~LRa~LRqDPDvImVGEIRD~ETAeiavqA 348 (500)
T COG2804 318 RALRAILRQDPDVIMVGEIRDLETAEIAVQA 348 (500)
T ss_pred HHHHHHhccCCCeEEEeccCCHHHHHHHHHH
Confidence 4488889999999999999988876655544
No 423
>PRK10867 signal recognition particle protein; Provisional
Probab=95.48 E-value=0.056 Score=54.93 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
.+.+|.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46799999999999999999998876554
No 424
>PRK14529 adenylate kinase; Provisional
Probab=95.47 E-value=0.052 Score=50.04 Aligned_cols=92 Identities=20% Similarity=0.131 Sum_probs=46.5
Q ss_pred EEEeccccchhhHHHHHHHhhhccc-ccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCC-cEEE
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIESQLNRLARK-KVLI 277 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~Ll 277 (507)
|.|.|++|+||||+++.++.++.-. .+.+-.+.. ............+.++..-..-++.-....+.+.+.+. .-=+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 7889999999999999999876322 222221110 01111222233333332211001011222355555432 3458
Q ss_pred EEcCC-CCHHHHHHHHc
Q 043250 278 VFDDV-SHRRQIESLIG 293 (507)
Q Consensus 278 VlDdv-~~~~~~~~l~~ 293 (507)
|||++ .+..|.+.|..
T Consensus 81 iLDGfPRt~~Qa~~l~~ 97 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWE 97 (223)
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 99999 56666665543
No 425
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.47 E-value=0.26 Score=51.24 Aligned_cols=48 Identities=23% Similarity=0.215 Sum_probs=36.9
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..++|....+.++.+.+.........+.|.|.+|+||+++|+.+...-
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 358888888888877665433344567899999999999999888753
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.45 E-value=0.019 Score=52.17 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=27.1
Q ss_pred EEEEeccccchhhHHHHHHHhhhcccccceEEEEec
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNV 234 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 234 (507)
.|+|+|-||+||||+|..++.++..+-...+.+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 489999999999999999777765554344555444
No 427
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.45 E-value=0.018 Score=60.87 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=38.4
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
+..+-|.+-.+.|.++.........+|.|+|++|+||||+|+.++.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34566766666666666554455668999999999999999999998754
No 428
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.45 E-value=0.043 Score=53.92 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=34.4
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc------ccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 232 (507)
..+.++|..+-....++-|+|++|+|||+|+.+++...... -..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 44555564333456788999999999999999998754321 13567776
No 429
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.44 E-value=0.024 Score=54.05 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF 230 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 230 (507)
.+..++.|.|.+|+|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 467899999999999999999999987766544433
No 430
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.44 E-value=0.096 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|+.|.|||||++.++...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998643
No 431
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.44 E-value=0.009 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.9
Q ss_pred EEEeccccchhhHHHHHHHhhh
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.|+|++|+||||+|+.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.42 E-value=0.024 Score=59.14 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=40.1
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.-+..|.+.|..+-....++.|.|++|+|||||+.+++.....+-..++++.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456677777654456788999999999999999999997766655666665
No 433
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.42 E-value=0.052 Score=55.28 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=51.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCHHH--
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLND--------GNRRNIES-- 265 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~-- 265 (507)
..+.++|.|.+|+|||+|+..++..........+.+..+++ ....+.++.+.+...-... .+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34678999999999999999988766544333333333322 2334555555555432111 11111111
Q ss_pred -------HHHHH---cCCcEEEEEcCCCC
Q 043250 266 -------QLNRL---ARKKVLIVFDDVSH 284 (507)
Q Consensus 266 -------l~~~l---~~~~~LlVlDdv~~ 284 (507)
+.+++ +++++||++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 44555 67899999999943
No 434
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.012 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999865
No 435
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.012 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEeccccchhhHHHHHHHhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
+-|.|+|-||+|||||+.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 45889999999999999999964
No 436
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.40 E-value=0.11 Score=48.79 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=29.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 232 (507)
....++.|.|.+|+|||+++.+++...... -..++|+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 345689999999999999999998866544 34555654
No 437
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.11 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=22.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|.|..|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998743
No 438
>PRK13946 shikimate kinase; Provisional
Probab=95.39 E-value=0.013 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.8
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.+.|.+.|++|+||||+++.+++++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999986
No 439
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.38 E-value=0.026 Score=60.22 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=42.7
Q ss_pred CCccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc-ccceEEEE
Q 043250 173 NKGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAL 232 (507)
Q Consensus 173 ~~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 232 (507)
.+.++|.+..++.+...+... +.+.++|++|+|||++|+.+++.+... |...+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 457899998888888877632 356799999999999999999987554 34444554
No 440
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.1 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|+|||||.+.++..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 441
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.38 E-value=0.087 Score=48.82 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 442
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.38 E-value=0.03 Score=54.49 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 186 IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 186 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
+.+.+....+...+|+|.|++|+|||||+..+...+...
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344343334567899999999999999999998865443
No 443
>PRK14530 adenylate kinase; Provisional
Probab=95.37 E-value=0.012 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.1
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|+|.|++|+||||+|+.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 444
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.37 E-value=0.16 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+++.++|+.|+||||-...++.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999976666665543
No 445
>PRK13764 ATPase; Provisional
Probab=95.36 E-value=0.042 Score=57.96 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=49.2
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHcCCcEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIES-QLNRLARKKVL 276 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-l~~~l~~~~~L 276 (507)
..|.|+|++|+||||+++.+++.+..+...+..+.+..+......+ .+.. ........ ....|+.++=.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i--------~q~~--~~~~~~~~~~~~lLR~rPD~ 327 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEI--------TQYS--KLEGSMEETADILLLVRPDY 327 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcc--------eEEe--eccccHHHHHHHHHhhCCCE
Confidence 4589999999999999999998775443222244322222111100 0000 00111122 22336778889
Q ss_pred EEEcCCCCHHHHHHH
Q 043250 277 IVFDDVSHRRQIESL 291 (507)
Q Consensus 277 lVlDdv~~~~~~~~l 291 (507)
+++|++.+.+.++.+
T Consensus 328 IivGEiRd~Et~~~~ 342 (602)
T PRK13764 328 TIYDEMRKTEDFKIF 342 (602)
T ss_pred EEECCCCCHHHHHHH
Confidence 999999988887764
No 446
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.35 E-value=0.028 Score=52.21 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=33.8
Q ss_pred HHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 185 EIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 185 ~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
.|.+.|..+-....++.|.|.+|+|||+++.+++.....+-..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555433334678999999999999999999876544444556654
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.34 E-value=0.016 Score=54.03 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=28.1
Q ss_pred CCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 195 EGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 195 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
+...++.|.|++|+||||||.+++.....+-..++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34568999999999999999888776543334555554
No 448
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.33 E-value=0.07 Score=43.94 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=32.5
Q ss_pred ccccccc----hHHHHHHhhhcC-CCCceEEEEeccccchhhHHHHHHHhhh
Q 043250 175 GLVGVEC----PIEEIESLLCIG-SEGVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 175 ~~vGR~~----el~~l~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.++|-.- -++.|.+.+... +..+-++..+|.+|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3455443 344555555432 3456788999999999999999998864
No 449
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.32 E-value=0.12 Score=51.10 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhc--c----cccceEEEE
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKIS--R----HFEGSYFAL 232 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~----~f~~~~~~~ 232 (507)
...|..+|..+-....++-|+|.+|+|||+|+..++.... . .-..++|+.
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 4456666654434577889999999999999998885322 1 112577776
No 450
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.32 E-value=0.016 Score=56.94 Aligned_cols=94 Identities=16% Similarity=0.048 Sum_probs=52.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhc--cCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHcCC
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEE--TGGIKDLQKKLLSELLNDG-NRRNIESQLNRLARK 273 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~-~~~~~~~l~~~l~~~ 273 (507)
...|.|+|..|+||||++..+...+... ...+-+.+..+... ......+. ...-.... .....+.+...|+.+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~~~---~~~~~~~~~~~~~~~ll~~~LR~~ 235 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVHLL---ASKGGQGRAKVTTQDLIEACLRLR 235 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEEEE---ecCCCCCcCcCcHHHHHHHHhccC
Confidence 4569999999999999999998866543 22222222221111 00000000 00000000 112223367788889
Q ss_pred cEEEEEcCCCCHHHHHHHHccc
Q 043250 274 KVLIVFDDVSHRRQIESLIGCL 295 (507)
Q Consensus 274 ~~LlVlDdv~~~~~~~~l~~~l 295 (507)
+=.+|++.+.+.+.+.. +...
T Consensus 236 PD~IivGEiR~~ea~~~-l~a~ 256 (332)
T PRK13900 236 PDRIIVGELRGAEAFSF-LRAI 256 (332)
T ss_pred CCeEEEEecCCHHHHHH-HHHH
Confidence 99999999998876654 4443
No 451
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.013 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|.|.|++|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999974
No 452
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.017 Score=59.54 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=24.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+++|+|++|+||||++..++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999998866543
No 453
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.31 E-value=0.015 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.1
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+.+++.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 454
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.31 E-value=0.064 Score=54.50 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKIS 222 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 222 (507)
.+.++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999988764
No 455
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.31 Score=48.91 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=23.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..+-+.+.|++|.|||.|++.++-+...
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcc
Confidence 3566789999999999999999987543
No 456
>PRK14527 adenylate kinase; Provisional
Probab=95.28 E-value=0.015 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|.|.|++|+||||+|+.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 457
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.26 Score=53.45 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.7
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.++++++|+.|+||||++..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 5799999999999999999999765
No 458
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.02 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.6
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|+|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999875
No 459
>PRK13975 thymidylate kinase; Provisional
Probab=95.26 E-value=0.016 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=23.5
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..|+|.|+.|+||||+++.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998754
No 460
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.26 E-value=0.06 Score=55.01 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=50.2
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccc-cceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCHHH-
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKKLLSELLND--------GNRRNIES- 265 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~- 265 (507)
..+.++|.|.+|+|||+|+..+++....+. +.+++. .+++ ....+.++...+...-... .+......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 346789999999999999999998765433 333443 2322 1234555555554332111 11111111
Q ss_pred --------HHHHH---cCCcEEEEEcCCC
Q 043250 266 --------QLNRL---ARKKVLIVFDDVS 283 (507)
Q Consensus 266 --------l~~~l---~~~~~LlVlDdv~ 283 (507)
+.+++ .++++||++|++-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 44554 3789999999994
No 461
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.24 E-value=0.059 Score=52.76 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=34.2
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcc------cccceEEEE
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFAL 232 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 232 (507)
..+..+|..+-....++-|+|++|+|||+|+.+++..... .-..++|+.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3455556533345678899999999999999999876432 112677776
No 462
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.018 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.4
Q ss_pred ceEEEEeccccchhhHHHHHHHhhh
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..+++|+|.||+||||+...+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999888765
No 463
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.24 E-value=0.085 Score=55.91 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.0
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
....++|+|+.|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999864
No 464
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.23 E-value=0.061 Score=53.00 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=33.9
Q ss_pred HHHHHcCCcEEEEEcCCCC---HHHHHHHHcccCCC--CCCcEEEEEeCchhhHhhcCCcee
Q 043250 266 QLNRLARKKVLIVFDDVSH---RRQIESLIGCLDEL--ASGSRVIITTRDKQVLKTCWASQI 322 (507)
Q Consensus 266 l~~~l~~~~~LlVlDdv~~---~~~~~~l~~~l~~~--~~~~~iliTtR~~~~~~~~~~~~~ 322 (507)
|.+.+.+++-+++.|.+.. ......++..+... ..|+.+++.|+.+++...+.++..
T Consensus 518 LAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 518 LAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 6667788888999998842 22222222222111 257777877777877776655443
No 465
>PLN02200 adenylate kinase family protein
Probab=95.23 E-value=0.016 Score=54.03 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+|.|.|+||+||||+|..+++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998764
No 466
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.23 E-value=0.23 Score=46.67 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=21.8
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
...+++|.|+.|.|||||.+.++-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 467
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.23 E-value=0.036 Score=49.76 Aligned_cols=21 Identities=29% Similarity=-0.023 Sum_probs=18.6
Q ss_pred EEEEeccccchhhHHHHHHHh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~ 219 (507)
++.|+|+.|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999883
No 468
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.22 E-value=0.02 Score=57.90 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.0
Q ss_pred ceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 197 VCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 197 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
...+.++|++|+|||+||+.++..+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 356899999999999999999987643
No 469
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.22 E-value=0.073 Score=54.08 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=51.3
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcccccceEEEEechhhhccCCHHHHHHHHHHHHhcC--------CCCCCHHH--
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELLND--------GNRRNIES-- 265 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~-- 265 (507)
..+.++|.|.+|+|||+|+..++.........++.+..+++- ...+.++.+.+...-... .+......
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER--~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC--chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999999999988665433333333333221 234555555554321111 11111111
Q ss_pred -------HHHHH---cCCcEEEEEcCCCC
Q 043250 266 -------QLNRL---ARKKVLIVFDDVSH 284 (507)
Q Consensus 266 -------l~~~l---~~~~~LlVlDdv~~ 284 (507)
+.+++ +++++||++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 44555 46899999999944
No 470
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.21 E-value=0.013 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.7
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.21 E-value=0.072 Score=58.66 Aligned_cols=24 Identities=25% Similarity=-0.000 Sum_probs=21.0
Q ss_pred CceEEEEeccccchhhHHHHHHHh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
+.+++.|+|+.+.||||+.+.++-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457899999999999999998864
No 472
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.20 E-value=0.15 Score=46.45 Aligned_cols=22 Identities=27% Similarity=-0.011 Sum_probs=20.4
Q ss_pred eEEEEeccccchhhHHHHHHHh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 473
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.19 E-value=0.031 Score=54.65 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.5
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877654
No 474
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.17 E-value=0.099 Score=54.65 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=32.8
Q ss_pred HHHHHcCCcEEEEEcCCC---CHHHHHHHHcccCCCCCCcEEEEEeCchhhHhhc
Q 043250 266 QLNRLARKKVLIVFDDVS---HRRQIESLIGCLDELASGSRVIITTRDKQVLKTC 317 (507)
Q Consensus 266 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iliTtR~~~~~~~~ 317 (507)
|.+.|-.++=+|+||.-- |.+.+..|-..+.. -+| .+||.|-+...+..+
T Consensus 164 LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH
Confidence 556677788899999773 33444444333332 345 689999998877665
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.16 E-value=0.016 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999864
No 476
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.15 E-value=0.015 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.329 Sum_probs=17.8
Q ss_pred EEEeccccchhhHHHHHHHhh
Q 043250 200 LGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~ 220 (507)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 477
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.15 E-value=0.044 Score=49.55 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=23.4
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..|+|.|..|+||||+++.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999987754
No 478
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.13 E-value=0.041 Score=49.77 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.0
Q ss_pred EEEEeccccchhhHHHHHHHhhhccc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
+|+|.|+.|+||||+++.+++.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999887543
No 479
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=95.13 E-value=0.05 Score=50.96 Aligned_cols=57 Identities=25% Similarity=0.207 Sum_probs=41.9
Q ss_pred ccCCccccccchHHH---HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccc
Q 043250 171 SENKGLVGVECPIEE---IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEG 227 (507)
Q Consensus 171 ~~~~~~vGR~~el~~---l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 227 (507)
..+..|||.+...+. +.+++....-..+.+.|.|++|.|||+||..+.+++...-+.
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPF 94 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPF 94 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCc
Confidence 455789997765543 455554433346789999999999999999999988765443
No 480
>PLN02796 D-glycerate 3-kinase
Probab=95.12 E-value=0.081 Score=51.75 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=24.4
Q ss_pred CceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
.+-+|+|.|..|+|||||+..+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4568999999999999999999987654
No 481
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.12 E-value=0.025 Score=53.96 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=28.7
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
++++|+|.+|+|||||+..+...+..+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988776 455554
No 482
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.34 Score=51.55 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=37.9
Q ss_pred cccccchHHHHHHhhhcCC-------CCceEEEEeccccchhhHHHHHHHhhhccc
Q 043250 176 LVGVECPIEEIESLLCIGS-------EGVCKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 176 ~vGR~~el~~l~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
..+++..+..+.+.+.... ....++.++|.+|+||||+++.++.++.-+
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 3567777777888776532 136789999999999999999999986554
No 483
>PRK06761 hypothetical protein; Provisional
Probab=95.11 E-value=0.024 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.1
Q ss_pred eEEEEeccccchhhHHHHHHHhhhccc
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987543
No 484
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.11 E-value=0.026 Score=51.72 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=26.1
Q ss_pred CCCceEEEEeccccchhhHHHHHHHhhhcc
Q 043250 194 SEGVCKLGIWGIGGIGKTTIAGAVFNKISR 223 (507)
Q Consensus 194 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 223 (507)
..+.++++++|..|+|||||..++.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457899999999999999999999987543
No 485
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.10 E-value=0.077 Score=57.56 Aligned_cols=50 Identities=20% Similarity=0.066 Sum_probs=36.7
Q ss_pred HHHHHHhhh-cCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEEEE
Q 043250 183 IEEIESLLC-IGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAL 232 (507)
Q Consensus 183 l~~l~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 232 (507)
...|..+|. .+-...+++-|+|++|+|||||+.+++......-..++|+.
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 345566664 33345788999999999999999998776555556677776
No 486
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.10 E-value=0.58 Score=48.55 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=35.7
Q ss_pred CccccccchHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 174 KGLVGVECPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 174 ~~~vGR~~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..++|....+..+.+.+..-......+.|.|..|+||+++|..+...
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 189 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYN 189 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHh
Confidence 35788887777777666543334456889999999999999998774
No 487
>PRK12289 GTPase RsgA; Reviewed
Probab=95.10 E-value=0.13 Score=51.04 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHh
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFN 219 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 219 (507)
+++|.+.|.. .+++|.|++|+|||||...+..
T Consensus 163 I~eL~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 163 LEALLEQLRN-----KITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred HHHHhhhhcc-----ceEEEEeCCCCCHHHHHHHHcC
Confidence 4556665531 3588999999999999999875
No 488
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.09 E-value=0.057 Score=55.89 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=51.8
Q ss_pred HHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc-cceEEEEechhhhccCCHHHHHHHHHHHHhcCCCCCCHH
Q 043250 186 IESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKKLLSELLNDGNRRNIE 264 (507)
Q Consensus 186 l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 264 (507)
+.++|.+ -+.....+|+|++|+|||+|+..+++.+...+ ...+++..+.+- ...+.++...+-..+..........
T Consensus 406 vIDll~P-IGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER--peEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 406 VIDLIMP-IGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER--PEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeecc-cccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc--hhhHHHHHHhccceEEEECCCCCHH
Confidence 3444442 23345688999999999999999999765433 333344433322 2233333333211111111111110
Q ss_pred ----------HHHHHH--cCCcEEEEEcCCCCH
Q 043250 265 ----------SQLNRL--ARKKVLIVFDDVSHR 285 (507)
Q Consensus 265 ----------~l~~~l--~~~~~LlVlDdv~~~ 285 (507)
.+.+++ .++.+||++|++-..
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 133444 568999999999543
No 489
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.08 E-value=0.08 Score=53.91 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.9
Q ss_pred CceEEEEeccccchhhHHHHHHHhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..+-.+|+|++|+||||+.+.++.+
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcC
Confidence 3467899999999999999999874
No 490
>PRK04182 cytidylate kinase; Provisional
Probab=95.06 E-value=0.018 Score=51.20 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.4
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 491
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.12 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.6
Q ss_pred CceEEEEeccccchhhHHHHHHHhhh
Q 043250 196 GVCKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 196 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
...+++++|+.|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999888753
No 492
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.05 E-value=0.045 Score=58.13 Aligned_cols=113 Identities=16% Similarity=0.089 Sum_probs=61.9
Q ss_pred HHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccccceEE-EEechhhhccCCHHHHHHHHHHHHhcC-CC-
Q 043250 183 IEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF-ALNVREAEETGGIKDLQKKLLSELLND-GN- 259 (507)
Q Consensus 183 l~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~- 259 (507)
++.+.+++. ....+|.|+|+.|+||||+...+.+.+... ...++ +.+-.+.. ..++ .+.... ..
T Consensus 305 ~~~l~~~~~---~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~tiEdpvE~~-~~~~--------~q~~v~~~~g 371 (564)
T TIGR02538 305 KALFLEAIH---KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTAEDPVEIN-LPGI--------NQVNVNPKIG 371 (564)
T ss_pred HHHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEecCCceec-CCCc--------eEEEeccccC
Confidence 445555553 234579999999999999987777765322 22222 11110100 0010 111101 11
Q ss_pred CCCHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHcccCCCCCCcEEEEEeCch
Q 043250 260 RRNIESQLNRLARKKVLIVFDDVSHRRQIESLIGCLDELASGSRVIITTRDK 311 (507)
Q Consensus 260 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iliTtR~~ 311 (507)
..-.+.++..|+..+=.|++.++.+.+.....+... ..|..|+-|-...
T Consensus 372 ~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~aa---~tGHlv~tTlHa~ 420 (564)
T TIGR02538 372 LTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAA---QTGHLVLSTLHTN 420 (564)
T ss_pred CCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHHH---HcCCcEEEEeccC
Confidence 222334788899999999999999988766554442 2344344444433
No 493
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.04 E-value=0.025 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.1
Q ss_pred EEEEeccccchhhHHHHHHHhhhccc
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKISRH 224 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 224 (507)
+++|+|+.|+|||||+..+...+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987655
No 494
>PRK14531 adenylate kinase; Provisional
Probab=95.03 E-value=0.019 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.0
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
.|.|.|++|+||||+++.++..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 495
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.02 E-value=0.02 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.8
Q ss_pred eEEEEeccccchhhHHHHHHHhhh
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
..|.|.|++|+|||||++.++..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 496
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.02 E-value=0.032 Score=48.37 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=29.4
Q ss_pred chHHHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhh
Q 043250 181 CPIEEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNK 220 (507)
Q Consensus 181 ~el~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 220 (507)
..+++|...|. + +++++.|..|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 56778888885 2 68999999999999999999864
No 497
>PRK14532 adenylate kinase; Provisional
Probab=95.01 E-value=0.017 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEeccccchhhHHHHHHHhhh
Q 043250 200 LGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 200 v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
|.|.|++|+||||+|+.+++++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999764
No 498
>PRK13768 GTPase; Provisional
Probab=95.00 E-value=0.03 Score=53.00 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=25.3
Q ss_pred eEEEEeccccchhhHHHHHHHhhhcccccceEE
Q 043250 198 CKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF 230 (507)
Q Consensus 198 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 230 (507)
.+++|.|++|+||||++..++..+...-..++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~ 35 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI 35 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 578999999999999999998876554333333
No 499
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.00 E-value=0.019 Score=50.64 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEeccccchhhHHHHHHHhhh
Q 043250 199 KLGIWGIGGIGKTTIAGAVFNKI 221 (507)
Q Consensus 199 ~v~I~G~~GiGKTtLa~~~~~~~ 221 (507)
+|+|+|++|+||||+|+.+++++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 500
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.99 E-value=0.11 Score=49.48 Aligned_cols=65 Identities=20% Similarity=0.106 Sum_probs=40.5
Q ss_pred HHHHHhhhcCCCCceEEEEeccccchhhHHHHHHHhhhcccc-cceEEEEechhhhccCCHHHHHHHHHHHHh
Q 043250 184 EEIESLLCIGSEGVCKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKKLLSELL 255 (507)
Q Consensus 184 ~~l~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (507)
..|.+.+. +-....++.|.|.+|+|||++|..++..+.... ..+.|++ -.-+..++..+++....
T Consensus 7 ~~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S------lEm~~~~l~~R~la~~s 72 (259)
T PF03796_consen 7 PALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS------LEMSEEELAARLLARLS 72 (259)
T ss_dssp HHHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE------SSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc------CCCCHHHHHHHHHHHhh
Confidence 34444443 222345899999999999999999999776543 4555554 12344556666655543
Done!